Query 019672
Match_columns 337
No_of_seqs 298 out of 2982
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2111 Uncharacterized conser 100.0 9.5E-50 2.1E-54 333.5 32.0 311 7-321 5-328 (346)
2 KOG2110 Uncharacterized conser 100.0 2.3E-47 5E-52 324.9 35.8 321 5-335 3-348 (391)
3 KOG0271 Notchless-like WD40 re 100.0 2.5E-35 5.4E-40 252.2 25.9 282 3-313 111-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-35 2.8E-40 256.7 20.0 274 4-313 172-458 (459)
5 KOG0279 G protein beta subunit 100.0 3.2E-30 6.9E-35 212.8 32.0 281 3-315 11-313 (315)
6 KOG0286 G-protein beta subunit 100.0 1.9E-30 4.1E-35 215.4 29.4 275 3-313 51-343 (343)
7 KOG0273 Beta-transducin family 100.0 1E-30 2.3E-35 229.2 28.8 271 5-315 233-523 (524)
8 KOG0315 G-protein beta subunit 100.0 2.4E-30 5.2E-35 210.4 25.7 239 4-258 37-294 (311)
9 KOG0263 Transcription initiati 100.0 3.4E-31 7.3E-36 245.2 23.2 235 5-256 376-653 (707)
10 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-32 1.8E-36 233.3 16.4 232 4-250 214-458 (459)
11 KOG0291 WD40-repeat-containing 100.0 1.6E-29 3.4E-34 232.7 29.9 295 5-317 305-614 (893)
12 KOG0315 G-protein beta subunit 100.0 1.2E-28 2.5E-33 200.6 27.0 262 20-318 11-291 (311)
13 KOG0316 Conserved WD40 repeat- 100.0 2.3E-28 4.9E-33 197.5 25.3 234 4-255 14-260 (307)
14 cd00200 WD40 WD40 domain, foun 100.0 2.4E-27 5.2E-32 207.1 33.4 272 4-313 6-289 (289)
15 KOG0291 WD40-repeat-containing 100.0 5E-28 1.1E-32 222.9 29.9 274 7-316 265-551 (893)
16 KOG0279 G protein beta subunit 100.0 4.9E-28 1.1E-32 199.9 26.2 233 3-252 59-313 (315)
17 KOG0318 WD40 repeat stress pro 100.0 3.2E-27 6.8E-32 209.9 32.7 277 4-315 187-560 (603)
18 KOG0266 WD40 repeat-containing 100.0 9.9E-28 2.2E-32 225.0 30.7 277 6-315 158-454 (456)
19 KOG0265 U5 snRNP-specific prot 100.0 5.2E-28 1.1E-32 201.6 24.6 274 1-311 41-334 (338)
20 KOG0284 Polyadenylation factor 100.0 2.8E-29 6.1E-34 216.7 15.9 273 6-314 95-379 (464)
21 PLN00181 protein SPA1-RELATED; 100.0 1.1E-26 2.3E-31 232.9 37.1 283 5-314 481-792 (793)
22 KOG0286 G-protein beta subunit 100.0 2.2E-27 4.8E-32 197.2 25.9 224 9-250 99-343 (343)
23 KOG0285 Pleiotropic regulator 100.0 1.1E-27 2.4E-32 203.8 23.8 285 4-320 148-444 (460)
24 KOG0271 Notchless-like WD40 re 100.0 7.2E-28 1.6E-32 206.5 21.5 232 3-250 196-479 (480)
25 KOG0295 WD40 repeat-containing 100.0 1.7E-27 3.8E-32 203.0 22.4 274 4-313 105-404 (406)
26 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-25 2.6E-30 189.0 32.2 238 6-258 13-268 (311)
27 KOG0643 Translation initiation 100.0 1.1E-26 2.4E-31 190.8 25.4 289 3-317 6-319 (327)
28 KOG0318 WD40 repeat stress pro 100.0 2E-25 4.4E-30 198.4 30.8 285 3-315 231-602 (603)
29 KOG0284 Polyadenylation factor 100.0 3.1E-27 6.8E-32 204.1 16.6 235 3-253 134-381 (464)
30 KOG0282 mRNA splicing factor [ 100.0 3.6E-27 7.9E-32 207.6 17.1 278 3-313 210-503 (503)
31 KOG0281 Beta-TrCP (transducin 100.0 1.8E-27 3.8E-32 202.0 14.4 273 6-317 196-479 (499)
32 KOG0295 WD40 repeat-containing 99.9 4.5E-26 9.8E-31 194.4 21.7 233 4-251 147-405 (406)
33 KOG0273 Beta-transducin family 99.9 1.6E-25 3.4E-30 196.7 25.7 232 4-252 273-523 (524)
34 KOG1407 WD40 repeat protein [F 99.9 2.2E-25 4.8E-30 182.7 23.7 235 4-256 17-265 (313)
35 KOG0276 Vesicle coat complex C 99.9 1.6E-25 3.4E-30 202.7 25.0 270 4-311 10-295 (794)
36 KOG0283 WD40 repeat-containing 99.9 4.8E-26 1E-30 212.7 22.4 235 5-254 265-578 (712)
37 KOG0263 Transcription initiati 99.9 8.8E-26 1.9E-30 209.5 23.8 236 47-320 379-654 (707)
38 KOG0276 Vesicle coat complex C 99.9 5E-25 1.1E-29 199.5 27.5 235 5-255 53-301 (794)
39 KOG0288 WD40 repeat protein Ti 99.9 1.8E-26 3.9E-31 199.7 17.0 233 4-250 216-459 (459)
40 KOG0319 WD40-repeat-containing 99.9 3.5E-25 7.5E-30 203.9 23.9 276 6-318 322-622 (775)
41 cd00200 WD40 WD40 domain, foun 99.9 5.3E-24 1.2E-28 185.9 29.9 229 5-250 49-289 (289)
42 KOG0265 U5 snRNP-specific prot 99.9 1.1E-24 2.4E-29 181.8 22.5 234 2-250 85-336 (338)
43 KOG0772 Uncharacterized conser 99.9 4.9E-25 1.1E-29 195.6 21.0 287 4-326 164-497 (641)
44 KOG0319 WD40-repeat-containing 99.9 1.9E-24 4.1E-29 199.0 25.5 281 10-327 284-596 (775)
45 KOG0645 WD40 repeat protein [G 99.9 4.3E-23 9.4E-28 170.1 30.7 276 3-315 10-311 (312)
46 KOG0292 Vesicle coat complex C 99.9 4.9E-24 1.1E-28 199.7 28.0 239 3-255 47-324 (1202)
47 KOG0296 Angio-associated migra 99.9 4.6E-24 1E-28 182.3 25.0 281 3-319 60-360 (399)
48 KOG0293 WD40 repeat-containing 99.9 4E-25 8.6E-30 191.4 18.3 235 4-254 266-515 (519)
49 KOG0268 Sof1-like rRNA process 99.9 1.9E-25 4.1E-30 190.6 15.5 275 3-316 62-346 (433)
50 KOG0266 WD40 repeat-containing 99.9 5.3E-24 1.1E-28 199.9 26.9 237 4-252 200-454 (456)
51 KOG0316 Conserved WD40 repeat- 99.9 6.7E-24 1.5E-28 171.7 23.1 233 46-318 17-260 (307)
52 KOG0293 WD40 repeat-containing 99.9 2.7E-24 5.9E-29 186.3 21.9 276 4-317 221-515 (519)
53 KOG0285 Pleiotropic regulator 99.9 1.6E-24 3.5E-29 184.7 20.1 232 46-317 151-391 (460)
54 KOG0278 Serine/threonine kinas 99.9 1.3E-24 2.8E-29 177.2 17.8 236 4-255 11-300 (334)
55 KOG0305 Anaphase promoting com 99.9 5.2E-24 1.1E-28 194.1 23.6 234 7-254 217-463 (484)
56 KOG0282 mRNA splicing factor [ 99.9 5.9E-25 1.3E-29 193.8 16.4 234 3-250 254-503 (503)
57 KOG0306 WD40-repeat-containing 99.9 8.9E-24 1.9E-28 194.9 23.7 274 4-316 370-665 (888)
58 PLN00181 protein SPA1-RELATED; 99.9 6.6E-23 1.4E-27 205.6 32.0 229 7-251 532-792 (793)
59 KOG0296 Angio-associated migra 99.9 5.2E-23 1.1E-27 175.9 24.6 234 3-252 102-398 (399)
60 KOG0292 Vesicle coat complex C 99.9 2.5E-23 5.4E-28 195.0 24.6 239 4-256 6-284 (1202)
61 KOG0288 WD40 repeat protein Ti 99.9 1.2E-24 2.6E-29 188.5 13.5 274 3-313 171-459 (459)
62 KOG0306 WD40-repeat-containing 99.9 1.5E-22 3.3E-27 186.9 27.7 290 3-325 103-590 (888)
63 KOG0305 Anaphase promoting com 99.9 1.2E-22 2.7E-27 185.2 26.2 268 11-317 181-463 (484)
64 KOG0289 mRNA splicing factor [ 99.9 2.8E-22 6.1E-27 174.8 26.0 278 6-314 218-505 (506)
65 KOG0310 Conserved WD40 repeat- 99.9 4.7E-23 1E-27 182.0 21.4 267 7-312 26-306 (487)
66 KOG0274 Cdc4 and related F-box 99.9 1.5E-22 3.2E-27 190.6 25.9 270 6-321 207-488 (537)
67 KOG0640 mRNA cleavage stimulat 99.9 1.6E-23 3.5E-28 175.7 17.1 218 3-256 108-339 (430)
68 PTZ00420 coronin; Provisional 99.9 7.3E-22 1.6E-26 186.6 30.2 218 73-317 52-295 (568)
69 KOG0275 Conserved WD40 repeat- 99.9 2.3E-23 5.1E-28 175.7 17.1 272 5-313 211-507 (508)
70 KOG0274 Cdc4 and related F-box 99.9 5.7E-22 1.2E-26 186.6 27.7 235 3-258 245-488 (537)
71 KOG0645 WD40 repeat protein [G 99.9 1.8E-21 3.9E-26 160.6 26.9 232 4-252 58-311 (312)
72 KOG0310 Conserved WD40 repeat- 99.9 5E-22 1.1E-26 175.6 25.0 228 7-253 68-310 (487)
73 PTZ00421 coronin; Provisional 99.9 2.1E-21 4.7E-26 182.3 30.9 232 9-255 22-293 (493)
74 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.9E-26 164.1 25.9 235 4-256 10-266 (323)
75 KOG0281 Beta-TrCP (transducin 99.9 4.4E-23 9.6E-28 175.4 16.0 230 3-255 233-480 (499)
76 KOG0278 Serine/threonine kinas 99.9 5.8E-23 1.3E-27 167.6 15.7 192 5-209 98-301 (334)
77 KOG0641 WD40 repeat protein [G 99.9 2.3E-20 4.9E-25 150.6 30.0 273 7-315 32-349 (350)
78 PTZ00420 coronin; Provisional 99.9 3.9E-21 8.4E-26 181.7 29.5 221 3-231 70-318 (568)
79 KOG0647 mRNA export protein (c 99.9 1.1E-21 2.3E-26 164.2 22.0 224 3-240 68-311 (347)
80 KOG0313 Microtubule binding pr 99.9 1.3E-21 2.9E-26 168.0 23.2 267 10-315 108-418 (423)
81 PTZ00421 coronin; Provisional 99.9 4.6E-21 1E-25 180.0 29.1 235 4-253 72-332 (493)
82 KOG0973 Histone transcription 99.9 1.6E-21 3.5E-26 186.9 23.8 239 5-253 67-356 (942)
83 KOG1407 WD40 repeat protein [F 99.9 1.6E-20 3.4E-25 154.3 24.5 230 5-252 62-311 (313)
84 KOG0647 mRNA export protein (c 99.9 2.2E-20 4.8E-25 156.3 25.4 231 4-252 24-281 (347)
85 KOG1036 Mitotic spindle checkp 99.9 6.8E-21 1.5E-25 159.8 22.1 223 5-243 52-295 (323)
86 KOG0277 Peroxisomal targeting 99.9 7.7E-21 1.7E-25 155.6 21.5 270 9-313 10-307 (311)
87 KOG0299 U3 snoRNP-associated p 99.9 1E-20 2.2E-25 166.3 23.1 236 5-256 140-414 (479)
88 KOG0275 Conserved WD40 repeat- 99.9 1.4E-21 3.1E-26 164.9 16.0 242 47-320 214-472 (508)
89 KOG0641 WD40 repeat protein [G 99.9 1.5E-19 3.4E-24 145.8 26.8 237 5-252 87-349 (350)
90 KOG1274 WD40 repeat protein [G 99.9 9.4E-20 2E-24 172.0 28.8 234 5-253 11-263 (933)
91 KOG0639 Transducin-like enhanc 99.9 9.1E-21 2E-25 168.2 20.3 270 5-314 417-703 (705)
92 KOG2055 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 165.0 20.7 233 7-253 257-513 (514)
93 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.5E-19 1.6E-23 156.1 31.2 231 9-256 32-283 (300)
94 KOG0289 mRNA splicing factor [ 99.9 3.3E-20 7.1E-25 162.0 21.5 194 48-258 221-425 (506)
95 KOG2096 WD40 repeat protein [G 99.9 3E-19 6.5E-24 150.6 25.6 238 3-256 82-364 (420)
96 KOG1273 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 153.1 22.8 270 10-315 26-322 (405)
97 KOG0283 WD40 repeat-containing 99.9 3.8E-20 8.1E-25 173.5 21.9 199 94-319 369-580 (712)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-18 4.9E-23 153.0 32.5 264 20-319 2-283 (300)
99 KOG1446 Histone H3 (Lys4) meth 99.9 8.3E-19 1.8E-23 147.9 27.6 235 47-315 15-262 (311)
100 KOG0268 Sof1-like rRNA process 99.9 1.2E-20 2.6E-25 161.4 15.8 231 3-253 105-346 (433)
101 KOG0772 Uncharacterized conser 99.9 2.8E-20 6E-25 165.6 18.7 201 47-258 166-400 (641)
102 KOG0308 Conserved WD40 repeat- 99.9 1.7E-20 3.6E-25 171.1 17.6 229 12-255 29-288 (735)
103 KOG0277 Peroxisomal targeting 99.9 4.4E-20 9.6E-25 151.2 18.0 230 7-250 60-307 (311)
104 KOG0643 Translation initiation 99.9 2E-19 4.3E-24 148.3 21.9 237 5-252 50-317 (327)
105 KOG2106 Uncharacterized conser 99.9 9.4E-19 2E-23 155.6 27.3 271 5-321 244-525 (626)
106 KOG0301 Phospholipase A2-activ 99.9 1.9E-19 4.1E-24 165.4 23.4 270 3-318 10-291 (745)
107 KOG0313 Microtubule binding pr 99.9 3E-19 6.6E-24 153.6 23.0 230 4-252 141-418 (423)
108 KOG0294 WD40 repeat-containing 99.9 3.9E-19 8.6E-24 149.7 23.2 236 2-257 38-286 (362)
109 KOG0973 Histone transcription 99.9 6.4E-19 1.4E-23 169.3 27.6 279 7-320 13-360 (942)
110 KOG0269 WD40 repeat-containing 99.8 1.3E-19 2.8E-24 168.2 20.4 237 7-257 39-301 (839)
111 KOG2055 WD40 repeat protein [G 99.8 1E-18 2.2E-23 153.9 22.6 278 2-315 208-512 (514)
112 KOG1539 WD repeat protein [Gen 99.8 1.7E-17 3.8E-22 155.3 31.4 234 10-255 162-609 (910)
113 KOG2048 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 153.4 27.8 244 47-330 26-287 (691)
114 KOG0264 Nucleosome remodeling 99.8 1.4E-18 3.1E-23 152.6 21.0 222 73-315 145-404 (422)
115 KOG0646 WD40 repeat protein [G 99.8 5E-19 1.1E-23 156.0 17.9 213 7-232 81-332 (476)
116 KOG0308 Conserved WD40 repeat- 99.8 2.2E-19 4.8E-24 163.8 15.3 214 73-317 45-287 (735)
117 KOG0299 U3 snoRNP-associated p 99.8 1.3E-18 2.7E-23 153.2 19.4 216 5-240 200-443 (479)
118 KOG0264 Nucleosome remodeling 99.8 3.1E-18 6.7E-23 150.5 21.4 236 5-253 122-405 (422)
119 KOG0650 WD40 repeat nucleolar 99.8 4.3E-18 9.3E-23 154.2 22.7 235 5-250 398-678 (733)
120 KOG2048 WD40 repeat protein [G 99.8 3.6E-17 7.7E-22 150.2 28.7 233 6-255 24-278 (691)
121 KOG4283 Transcription-coupled 99.8 1.5E-17 3.3E-22 139.1 22.0 196 4-209 40-280 (397)
122 KOG1274 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 157.1 24.7 233 46-316 13-263 (933)
123 KOG0294 WD40 repeat-containing 99.8 1.5E-17 3.2E-22 140.3 21.3 232 47-319 42-285 (362)
124 KOG0646 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 147.4 20.1 267 30-320 20-312 (476)
125 KOG1408 WD40 repeat protein [F 99.8 7.6E-18 1.6E-22 155.4 18.5 236 5-253 457-714 (1080)
126 KOG1332 Vesicle coat complex C 99.8 2.4E-17 5.2E-22 134.5 18.2 235 4-253 8-287 (299)
127 KOG0640 mRNA cleavage stimulat 99.8 1.2E-17 2.7E-22 140.5 17.0 234 5-251 170-425 (430)
128 KOG1539 WD repeat protein [Gen 99.8 1E-16 2.2E-21 150.2 24.9 224 8-250 396-646 (910)
129 KOG0300 WD40 repeat-containing 99.8 1.3E-16 2.9E-21 134.8 22.2 281 3-317 144-478 (481)
130 KOG1408 WD40 repeat protein [F 99.8 1E-16 2.3E-21 147.9 22.0 233 49-316 462-714 (1080)
131 KOG1332 Vesicle coat complex C 99.8 5.5E-17 1.2E-21 132.5 17.9 232 53-313 18-284 (299)
132 KOG0639 Transducin-like enhanc 99.8 1.4E-17 3E-22 148.2 15.2 227 6-251 464-703 (705)
133 KOG0269 WD40 repeat-containing 99.8 9.2E-18 2E-22 156.0 14.2 234 10-256 90-344 (839)
134 KOG2919 Guanine nucleotide-bin 99.8 4.2E-16 9.1E-21 132.0 22.8 234 10-256 52-331 (406)
135 KOG2445 Nuclear pore complex c 99.8 6.6E-16 1.4E-20 130.0 23.6 238 3-252 9-318 (361)
136 KOG0267 Microtubule severing p 99.8 2.7E-18 5.9E-23 158.5 10.2 222 5-243 26-259 (825)
137 KOG0267 Microtubule severing p 99.7 1.8E-18 3.8E-23 159.7 7.7 172 73-254 48-228 (825)
138 KOG0270 WD40 repeat-containing 99.7 1.4E-16 3E-21 139.9 17.0 229 18-258 191-455 (463)
139 KOG4283 Transcription-coupled 99.7 1.1E-15 2.4E-20 128.0 21.0 198 46-256 43-280 (397)
140 KOG0302 Ribosome Assembly prot 99.7 2.3E-16 4.9E-21 136.0 16.3 185 112-320 174-383 (440)
141 KOG0321 WD40 repeat-containing 99.7 2.5E-15 5.4E-20 137.4 23.6 275 11-316 53-392 (720)
142 KOG4328 WD40 protein [Function 99.7 9.7E-16 2.1E-20 135.1 20.2 237 5-255 184-453 (498)
143 KOG0300 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 129.2 19.4 237 4-255 187-479 (481)
144 PRK11028 6-phosphogluconolacto 99.7 5.1E-14 1.1E-18 127.5 31.6 264 25-320 9-309 (330)
145 KOG0301 Phospholipase A2-activ 99.7 1.8E-15 4E-20 139.4 21.0 218 13-254 64-290 (745)
146 KOG2096 WD40 repeat protein [G 99.7 4.2E-15 9E-20 125.8 21.4 227 9-250 134-400 (420)
147 KOG4378 Nuclear protein COP1 [ 99.7 8.2E-16 1.8E-20 136.8 17.9 234 7-258 34-286 (673)
148 KOG4378 Nuclear protein COP1 [ 99.7 1.3E-15 2.9E-20 135.5 18.8 264 21-319 5-284 (673)
149 KOG0307 Vesicle coat complex C 99.7 1.3E-16 2.8E-21 154.3 13.1 219 73-317 88-329 (1049)
150 KOG1188 WD40 repeat protein [G 99.7 7.6E-16 1.6E-20 131.3 16.2 197 112-336 49-261 (376)
151 KOG4328 WD40 protein [Function 99.7 4.5E-15 9.7E-20 131.0 21.3 194 47-252 187-399 (498)
152 KOG0322 G-protein beta subunit 99.7 5.1E-16 1.1E-20 128.1 14.5 232 5-251 12-322 (323)
153 KOG0321 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 138.2 19.5 243 4-258 97-397 (720)
154 KOG1034 Transcriptional repres 99.7 5.2E-15 1.1E-19 125.7 20.6 280 4-314 35-382 (385)
155 KOG1188 WD40 repeat protein [G 99.7 5.4E-15 1.2E-19 126.2 20.8 180 73-258 48-248 (376)
156 KOG0302 Ribosome Assembly prot 99.7 3.6E-15 7.7E-20 128.7 19.5 237 3-250 147-436 (440)
157 KOG0270 WD40 repeat-containing 99.7 1.7E-14 3.6E-19 127.0 23.1 278 12-324 130-458 (463)
158 KOG2106 Uncharacterized conser 99.7 2.6E-14 5.7E-19 127.6 24.2 284 5-315 285-581 (626)
159 KOG0307 Vesicle coat complex C 99.7 3.9E-16 8.4E-21 151.1 13.3 239 5-255 62-330 (1049)
160 KOG1538 Uncharacterized conser 99.7 6.9E-15 1.5E-19 135.2 20.2 264 9-314 14-292 (1081)
161 KOG1272 WD40-repeat-containing 99.7 4E-16 8.7E-21 137.8 11.8 219 10-250 132-360 (545)
162 PRK11028 6-phosphogluconolacto 99.7 1.1E-13 2.3E-18 125.4 28.0 231 8-254 35-306 (330)
163 KOG1445 Tumor-specific antigen 99.7 3E-15 6.5E-20 136.8 17.5 131 158-314 602-749 (1012)
164 KOG1963 WD40 repeat protein [G 99.7 1.2E-13 2.6E-18 130.7 26.4 281 13-320 22-380 (792)
165 KOG1517 Guanine nucleotide bin 99.6 4.1E-14 8.9E-19 136.0 22.1 278 9-315 1066-1381(1387)
166 KOG1063 RNA polymerase II elon 99.6 3.8E-13 8.3E-18 124.3 27.0 285 4-317 264-650 (764)
167 KOG1063 RNA polymerase II elon 99.6 1.6E-13 3.5E-18 126.7 23.5 289 4-318 358-702 (764)
168 KOG0771 Prolactin regulatory e 99.6 2.5E-14 5.5E-19 125.2 16.7 194 50-256 148-358 (398)
169 KOG2110 Uncharacterized conser 99.6 7.2E-13 1.6E-17 114.4 24.8 211 75-318 26-251 (391)
170 KOG1517 Guanine nucleotide bin 99.6 1.3E-13 2.8E-18 132.7 21.1 234 6-254 1108-1383(1387)
171 KOG1273 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 115.5 19.8 196 42-253 19-227 (405)
172 KOG4227 WD40 repeat protein [G 99.6 3.1E-13 6.7E-18 117.4 21.2 293 5-315 54-387 (609)
173 KOG2445 Nuclear pore complex c 99.6 1.1E-12 2.4E-17 110.8 23.4 243 50-317 17-320 (361)
174 COG2319 FOG: WD40 repeat [Gene 99.6 1E-11 2.2E-16 113.9 31.8 237 4-256 62-318 (466)
175 KOG1963 WD40 repeat protein [G 99.6 2.6E-12 5.7E-17 121.8 27.4 288 6-316 204-539 (792)
176 KOG0290 Conserved WD40 repeat- 99.6 3.7E-13 8E-18 112.8 19.2 226 4-243 93-357 (364)
177 KOG0644 Uncharacterized conser 99.6 1.6E-14 3.5E-19 135.7 12.3 240 5-258 188-474 (1113)
178 KOG0650 WD40 repeat nucleolar 99.5 1.2E-12 2.5E-17 119.4 21.2 238 42-313 396-678 (733)
179 KOG1007 WD repeat protein TSSC 99.5 2.8E-12 6E-17 107.6 21.1 233 5-253 61-362 (370)
180 KOG0642 Cell-cycle nuclear pro 99.5 1.3E-13 2.9E-18 124.7 14.4 237 5-254 292-563 (577)
181 KOG1034 Transcriptional repres 99.5 1E-12 2.3E-17 111.8 18.5 237 3-251 85-382 (385)
182 KOG0303 Actin-binding protein 99.5 1.7E-12 3.8E-17 112.9 20.1 196 93-318 80-297 (472)
183 KOG0290 Conserved WD40 repeat- 99.5 5E-12 1.1E-16 106.1 21.6 232 7-255 44-321 (364)
184 KOG1587 Cytoplasmic dynein int 99.5 7.1E-12 1.5E-16 118.0 25.0 257 30-317 224-518 (555)
185 COG2319 FOG: WD40 repeat [Gene 99.5 5.2E-11 1.1E-15 109.1 30.4 232 9-255 111-362 (466)
186 KOG1587 Cytoplasmic dynein int 99.5 2.5E-12 5.3E-17 121.1 21.1 233 6-254 241-518 (555)
187 KOG0649 WD40 repeat protein [G 99.5 6.9E-12 1.5E-16 102.9 20.7 221 10-254 13-276 (325)
188 KOG1009 Chromatin assembly com 99.5 2E-12 4.4E-17 112.8 18.6 140 7-155 13-185 (434)
189 KOG1445 Tumor-specific antigen 99.5 6.7E-13 1.4E-17 121.7 15.9 153 97-257 584-755 (1012)
190 KOG2919 Guanine nucleotide-bin 99.5 6.1E-12 1.3E-16 107.1 20.5 229 52-316 55-328 (406)
191 KOG4497 Uncharacterized conser 99.5 5.9E-12 1.3E-16 107.4 19.5 183 12-204 13-239 (447)
192 KOG0649 WD40 repeat protein [G 99.5 2.5E-11 5.5E-16 99.6 22.1 224 3-250 58-314 (325)
193 KOG1007 WD repeat protein TSSC 99.5 3.9E-12 8.5E-17 106.7 17.7 216 73-316 38-290 (370)
194 PRK01742 tolB translocation pr 99.5 3.8E-12 8.3E-17 119.2 19.1 208 5-230 201-426 (429)
195 KOG2321 WD40 repeat protein [G 99.5 2.8E-11 6E-16 110.1 22.0 269 7-314 51-342 (703)
196 KOG1272 WD40-repeat-containing 99.4 3.5E-13 7.6E-18 119.4 9.4 173 73-257 149-328 (545)
197 KOG2394 WD40 protein DMR-N9 [G 99.4 1.1E-11 2.4E-16 111.8 18.9 151 73-228 193-383 (636)
198 KOG1538 Uncharacterized conser 99.4 9.2E-12 2E-16 115.0 17.9 230 3-253 49-294 (1081)
199 KOG0303 Actin-binding protein 99.4 2.9E-11 6.3E-16 105.4 19.7 220 3-231 77-321 (472)
200 PRK01742 tolB translocation pr 99.4 3E-11 6.6E-16 113.2 21.3 206 29-252 185-401 (429)
201 PF08662 eIF2A: Eukaryotic tra 99.4 8.6E-12 1.9E-16 103.7 15.7 106 138-253 62-180 (194)
202 KOG0771 Prolactin regulatory e 99.4 6E-12 1.3E-16 110.5 14.9 185 11-206 148-355 (398)
203 KOG3881 Uncharacterized conser 99.4 5.4E-11 1.2E-15 103.6 19.6 234 8-255 56-323 (412)
204 KOG1240 Protein kinase contain 99.4 9.2E-11 2E-15 115.0 23.1 241 5-257 1046-1339(1431)
205 KOG1240 Protein kinase contain 99.4 6.3E-11 1.4E-15 116.1 21.3 231 73-315 1069-1334(1431)
206 KOG0322 G-protein beta subunit 99.4 1.1E-11 2.3E-16 102.9 13.2 233 50-314 16-322 (323)
207 KOG1334 WD40 repeat protein [G 99.4 1.5E-11 3.2E-16 109.8 15.0 280 3-314 138-465 (559)
208 KOG1524 WD40 repeat-containing 99.4 4.7E-11 1E-15 107.8 17.2 251 6-311 13-282 (737)
209 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.7E-09 1E-13 94.2 29.3 230 15-258 53-336 (352)
210 PRK03629 tolB translocation pr 99.3 8.2E-10 1.8E-14 103.4 25.2 209 30-253 181-407 (429)
211 KOG2111 Uncharacterized conser 99.3 1.3E-09 2.8E-14 92.8 23.4 164 29-207 76-258 (346)
212 PF02239 Cytochrom_D1: Cytochr 99.3 1.9E-09 4.2E-14 98.4 26.1 179 27-213 15-210 (369)
213 KOG4547 WD40 repeat-containing 99.3 7.4E-10 1.6E-14 101.3 23.0 180 59-254 6-222 (541)
214 PRK03629 tolB translocation pr 99.3 5.6E-10 1.2E-14 104.5 22.9 214 6-229 197-427 (429)
215 KOG1009 Chromatin assembly com 99.3 1.7E-11 3.7E-16 107.1 11.4 114 138-258 16-159 (434)
216 KOG3881 Uncharacterized conser 99.3 2.8E-10 6E-15 99.3 18.5 202 18-232 115-344 (412)
217 PF02239 Cytochrom_D1: Cytochr 99.3 3.8E-09 8.3E-14 96.5 26.2 234 11-257 40-352 (369)
218 KOG1310 WD40 repeat protein [G 99.3 9E-11 2E-15 106.3 14.9 203 3-213 46-311 (758)
219 KOG2139 WD40 repeat protein [G 99.3 3.4E-09 7.3E-14 91.9 23.4 222 7-244 98-367 (445)
220 KOG1524 WD40 repeat-containing 99.3 1.8E-10 3.8E-15 104.2 15.7 194 21-246 77-280 (737)
221 KOG2139 WD40 repeat protein [G 99.3 3.9E-10 8.4E-15 97.6 17.1 149 96-253 100-269 (445)
222 KOG0974 WD-repeat protein WDR6 99.3 4.6E-10 9.9E-15 108.6 19.4 272 4-317 4-290 (967)
223 KOG1354 Serine/threonine prote 99.3 6.7E-10 1.4E-14 95.6 18.3 282 8-330 26-372 (433)
224 KOG2315 Predicted translation 99.3 8.9E-09 1.9E-13 93.9 26.5 273 7-315 34-390 (566)
225 KOG2314 Translation initiation 99.3 7.5E-09 1.6E-13 94.3 25.2 235 10-253 213-526 (698)
226 PF08662 eIF2A: Eukaryotic tra 99.2 1.2E-09 2.5E-14 90.9 18.6 114 93-213 58-186 (194)
227 PRK04922 tolB translocation pr 99.2 5.8E-09 1.3E-13 98.0 25.2 209 30-253 186-412 (433)
228 PF10282 Lactonase: Lactonase, 99.2 2.2E-07 4.7E-12 84.7 34.7 269 28-320 13-327 (345)
229 PF10282 Lactonase: Lactonase, 99.2 7.7E-08 1.7E-12 87.6 31.0 231 10-253 39-323 (345)
230 KOG2394 WD40 protein DMR-N9 [G 99.2 1.1E-10 2.3E-15 105.6 11.6 88 175-268 291-378 (636)
231 KOG4497 Uncharacterized conser 99.2 2.6E-10 5.5E-15 97.6 13.1 183 51-250 13-238 (447)
232 PRK04922 tolB translocation pr 99.2 1.1E-08 2.3E-13 96.2 25.5 173 74-255 183-371 (433)
233 TIGR03300 assembly_YfgL outer 99.2 8.6E-09 1.9E-13 95.1 24.4 256 19-312 105-376 (377)
234 PRK05137 tolB translocation pr 99.2 1.2E-08 2.5E-13 96.0 25.4 211 30-254 184-414 (435)
235 KOG0642 Cell-cycle nuclear pro 99.2 2.4E-10 5.1E-15 103.9 13.1 202 3-213 340-569 (577)
236 KOG4227 WD40 repeat protein [G 99.2 1.8E-09 4E-14 94.3 17.4 236 53-318 61-325 (609)
237 PRK05137 tolB translocation pr 99.2 1.4E-08 3E-13 95.5 23.0 214 5-229 199-432 (435)
238 KOG1523 Actin-related protein 99.1 1.2E-08 2.6E-13 87.1 19.8 221 6-243 9-269 (361)
239 TIGR03300 assembly_YfgL outer 99.1 6.2E-08 1.3E-12 89.4 26.3 262 19-326 65-346 (377)
240 PRK02889 tolB translocation pr 99.1 5.9E-08 1.3E-12 90.9 25.6 207 30-251 178-402 (427)
241 KOG0644 Uncharacterized conser 99.1 3.3E-10 7.2E-15 107.2 10.0 228 53-318 195-471 (1113)
242 KOG0974 WD-repeat protein WDR6 99.1 6E-09 1.3E-13 101.1 17.3 182 54-254 95-290 (967)
243 PRK02889 tolB translocation pr 99.1 7.9E-08 1.7E-12 90.1 23.7 182 59-255 164-363 (427)
244 KOG1310 WD40 repeat protein [G 99.1 7.4E-09 1.6E-13 94.2 15.8 155 93-253 49-232 (758)
245 TIGR02800 propeller_TolB tol-p 99.0 1.3E-07 2.9E-12 88.3 24.3 172 74-254 169-356 (417)
246 KOG2321 WD40 repeat protein [G 99.0 2.9E-08 6.2E-13 90.9 18.7 174 75-256 155-347 (703)
247 TIGR02800 propeller_TolB tol-p 99.0 2.3E-07 4.9E-12 86.8 25.6 207 30-251 172-396 (417)
248 KOG1523 Actin-related protein 99.0 7.9E-09 1.7E-13 88.2 14.0 152 137-316 12-177 (361)
249 PLN02919 haloacid dehalogenase 99.0 6.4E-07 1.4E-11 92.3 30.4 231 11-255 571-891 (1057)
250 PRK04792 tolB translocation pr 99.0 7E-08 1.5E-12 90.9 21.6 213 6-229 216-446 (448)
251 PRK00178 tolB translocation pr 99.0 1.5E-07 3.3E-12 88.4 23.0 214 5-229 196-427 (430)
252 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.9E-06 4E-11 77.6 28.4 250 28-315 27-330 (352)
253 PRK00178 tolB translocation pr 99.0 1.1E-06 2.4E-11 82.6 27.4 171 76-255 180-366 (430)
254 PF13360 PQQ_2: PQQ-like domai 99.0 8.2E-07 1.8E-11 76.3 24.0 207 29-256 4-234 (238)
255 KOG1064 RAVE (regulator of V-A 98.9 2.4E-08 5.2E-13 101.8 14.0 162 73-255 2228-2401(2439)
256 KOG2315 Predicted translation 98.9 8.4E-07 1.8E-11 81.3 22.6 229 11-253 129-391 (566)
257 COG2706 3-carboxymuconate cycl 98.9 1.1E-05 2.4E-10 70.6 28.5 236 7-255 39-324 (346)
258 COG5354 Uncharacterized protei 98.9 2.6E-06 5.7E-11 77.3 25.3 241 6-254 31-308 (561)
259 COG2706 3-carboxymuconate cycl 98.9 1E-05 2.2E-10 70.8 27.9 269 27-320 15-326 (346)
260 PRK04792 tolB translocation pr 98.9 2.2E-06 4.8E-11 80.8 25.4 208 30-252 200-425 (448)
261 KOG1064 RAVE (regulator of V-A 98.8 3.6E-08 7.8E-13 100.6 13.0 190 9-215 2210-2408(2439)
262 PRK11138 outer membrane biogen 98.8 1.2E-06 2.7E-11 81.3 22.7 255 19-314 120-393 (394)
263 PRK11138 outer membrane biogen 98.8 4.4E-06 9.5E-11 77.6 25.3 216 19-255 69-315 (394)
264 KOG1334 WD40 repeat protein [G 98.8 1.2E-07 2.6E-12 85.3 13.0 244 54-317 148-426 (559)
265 COG4946 Uncharacterized protei 98.8 4.7E-06 1E-10 75.2 22.8 201 15-232 274-501 (668)
266 PRK01029 tolB translocation pr 98.8 5.7E-06 1.2E-10 77.5 24.8 218 6-230 183-425 (428)
267 COG5170 CDC55 Serine/threonine 98.8 2.7E-07 5.9E-12 78.8 13.7 285 6-317 25-369 (460)
268 PRK01029 tolB translocation pr 98.7 4.9E-06 1.1E-10 77.9 23.2 174 74-256 164-363 (428)
269 PF13360 PQQ_2: PQQ-like domai 98.7 5.9E-06 1.3E-10 70.9 22.1 206 74-316 2-231 (238)
270 KOG4532 WD40-like repeat conta 98.7 2.7E-06 6E-11 71.4 18.7 179 73-258 92-288 (344)
271 KOG4547 WD40 repeat-containing 98.7 4.9E-06 1.1E-10 76.8 21.6 178 16-206 2-221 (541)
272 KOG1354 Serine/threonine prote 98.7 1.3E-06 2.7E-11 75.8 15.8 154 95-255 165-362 (433)
273 COG4946 Uncharacterized protei 98.6 2.4E-05 5.2E-10 70.7 22.5 117 5-128 357-484 (668)
274 KOG3914 WD repeat protein WDR4 98.6 1.3E-06 2.8E-11 77.0 14.3 95 158-258 131-229 (390)
275 KOG4532 WD40-like repeat conta 98.6 1.1E-05 2.3E-10 68.0 18.9 204 20-232 85-315 (344)
276 KOG4190 Uncharacterized conser 98.6 2.4E-07 5.1E-12 84.8 9.5 171 72-251 754-947 (1034)
277 PLN02919 haloacid dehalogenase 98.6 6.3E-05 1.4E-09 77.9 28.3 176 73-255 588-836 (1057)
278 PF04762 IKI3: IKI3 family; I 98.6 9.4E-05 2E-09 75.3 28.5 270 6-314 74-378 (928)
279 PF04762 IKI3: IKI3 family; I 98.5 8.1E-05 1.7E-09 75.8 26.3 293 6-318 119-459 (928)
280 PF08450 SGL: SMP-30/Gluconola 98.5 0.00037 7.9E-09 60.3 26.9 209 12-241 4-244 (246)
281 PF00400 WD40: WD domain, G-be 98.5 3.9E-07 8.4E-12 54.5 5.6 38 208-250 2-39 (39)
282 KOG1912 WD40 repeat protein [G 98.5 3.9E-05 8.5E-10 73.2 20.9 92 5-103 53-164 (1062)
283 PF15492 Nbas_N: Neuroblastoma 98.5 0.00015 3.3E-09 61.8 22.5 193 13-214 3-268 (282)
284 PRK04043 tolB translocation pr 98.5 0.00041 8.9E-09 64.8 27.5 188 52-253 193-401 (419)
285 KOG1409 Uncharacterized conser 98.5 1.1E-05 2.3E-10 70.1 15.4 190 7-207 68-272 (404)
286 PRK04043 tolB translocation pr 98.5 0.00014 3E-09 67.9 24.3 189 9-206 189-401 (419)
287 KOG2695 WD40 repeat protein [G 98.5 8.4E-07 1.8E-11 76.9 8.4 148 18-174 224-383 (425)
288 COG5354 Uncharacterized protei 98.4 0.00012 2.6E-09 66.8 22.1 225 8-253 72-349 (561)
289 PF07433 DUF1513: Protein of u 98.4 0.00049 1.1E-08 60.2 24.8 231 10-253 7-284 (305)
290 PF06433 Me-amine-dh_H: Methyl 98.4 0.00017 3.8E-09 63.8 22.0 217 29-258 18-326 (342)
291 PF00400 WD40: WD domain, G-be 98.4 8.9E-07 1.9E-11 52.9 4.6 31 172-203 9-39 (39)
292 KOG0280 Uncharacterized conser 98.3 0.00011 2.5E-09 62.6 18.5 147 157-328 93-261 (339)
293 PF11768 DUF3312: Protein of u 98.3 1.8E-05 3.9E-10 73.6 15.0 71 175-253 260-330 (545)
294 KOG3914 WD repeat protein WDR4 98.3 1.3E-05 2.8E-10 70.9 13.2 154 12-174 67-230 (390)
295 KOG4714 Nucleoporin [Nuclear s 98.3 1.6E-05 3.5E-10 66.6 11.6 152 96-253 93-255 (319)
296 KOG1832 HIV-1 Vpr-binding prot 98.2 1.4E-06 3.1E-11 83.8 5.7 202 6-232 1100-1314(1516)
297 KOG1275 PAB-dependent poly(A) 98.2 3.4E-05 7.4E-10 74.9 14.4 173 19-203 147-340 (1118)
298 KOG1275 PAB-dependent poly(A) 98.2 6.4E-05 1.4E-09 73.1 15.4 167 74-250 156-340 (1118)
299 KOG4714 Nucleoporin [Nuclear s 98.2 7.4E-05 1.6E-09 62.7 13.8 90 112-205 158-254 (319)
300 KOG0882 Cyclophilin-related pe 98.2 3.1E-05 6.8E-10 69.6 11.9 189 57-257 19-236 (558)
301 KOG1912 WD40 repeat protein [G 98.2 0.00021 4.5E-09 68.5 17.9 293 6-316 14-365 (1062)
302 KOG2695 WD40 repeat protein [G 98.2 7.4E-06 1.6E-10 71.1 7.6 141 106-256 227-380 (425)
303 PF07433 DUF1513: Protein of u 98.1 0.0016 3.4E-08 57.1 21.8 181 12-197 55-278 (305)
304 KOG0280 Uncharacterized conser 98.1 0.00051 1.1E-08 58.8 17.7 140 112-257 94-246 (339)
305 PF03178 CPSF_A: CPSF A subuni 98.1 0.0018 4E-08 58.3 22.9 215 29-249 3-262 (321)
306 KOG1920 IkappaB kinase complex 98.1 0.004 8.6E-08 62.9 26.2 270 7-315 68-365 (1265)
307 KOG4190 Uncharacterized conser 98.1 2.4E-05 5.1E-10 72.0 10.3 198 5-215 733-958 (1034)
308 PF08450 SGL: SMP-30/Gluconola 98.1 0.005 1.1E-07 53.2 29.3 181 58-252 11-213 (246)
309 cd00216 PQQ_DH Dehydrogenases 98.1 0.0024 5.3E-08 61.0 24.1 187 21-214 63-328 (488)
310 cd00216 PQQ_DH Dehydrogenases 98.1 0.0066 1.4E-07 58.1 26.9 227 20-256 111-428 (488)
311 KOG2314 Translation initiation 98.0 0.0014 2.9E-08 60.8 20.1 229 12-252 310-573 (698)
312 PF05096 Glu_cyclase_2: Glutam 98.0 0.0074 1.6E-07 51.9 24.2 158 72-240 65-249 (264)
313 KOG2041 WD40 repeat protein [G 98.0 0.00088 1.9E-08 63.8 18.8 221 5-243 12-279 (1189)
314 KOG0309 Conserved WD40 repeat- 98.0 0.0001 2.2E-09 70.2 12.5 153 96-256 69-236 (1081)
315 PF15492 Nbas_N: Neuroblastoma 98.0 0.0056 1.2E-07 52.4 21.7 152 97-255 46-262 (282)
316 PF00780 CNH: CNH domain; Int 97.9 0.0084 1.8E-07 52.6 23.3 210 17-256 5-259 (275)
317 KOG2066 Vacuolar assembly/sort 97.9 0.00031 6.8E-09 67.6 14.5 140 96-256 41-191 (846)
318 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0096 2.1E-07 50.5 23.6 102 20-129 24-131 (354)
319 KOG0882 Cyclophilin-related pe 97.9 0.00017 3.7E-09 65.0 12.0 231 6-249 52-369 (558)
320 PRK02888 nitrous-oxide reducta 97.9 0.0029 6.3E-08 60.6 20.8 154 145-316 202-405 (635)
321 PF04053 Coatomer_WDAD: Coatom 97.9 0.0067 1.5E-07 56.8 23.1 213 8-253 33-263 (443)
322 KOG2041 WD40 repeat protein [G 97.9 9.5E-05 2.1E-09 70.1 10.7 115 133-253 12-146 (1189)
323 KOG1409 Uncharacterized conser 97.9 0.0011 2.5E-08 57.9 16.5 226 56-320 34-275 (404)
324 PRK02888 nitrous-oxide reducta 97.9 0.0045 9.8E-08 59.4 21.6 183 14-206 199-405 (635)
325 PF03178 CPSF_A: CPSF A subuni 97.8 0.0022 4.8E-08 57.8 18.3 168 75-253 2-203 (321)
326 PF00780 CNH: CNH domain; Int 97.8 0.022 4.8E-07 49.9 23.3 190 8-214 36-264 (275)
327 PF04841 Vps16_N: Vps16, N-ter 97.8 0.026 5.6E-07 52.7 24.3 201 13-231 34-271 (410)
328 KOG2114 Vacuolar assembly/sort 97.8 0.0064 1.4E-07 59.3 20.2 197 14-217 30-255 (933)
329 PF08553 VID27: VID27 cytoplas 97.7 0.0021 4.6E-08 63.6 17.1 128 112-252 503-647 (794)
330 PF08553 VID27: VID27 cytoplas 97.7 0.0093 2E-07 59.2 20.8 126 73-204 502-646 (794)
331 PF04053 Coatomer_WDAD: Coatom 97.6 0.0028 6E-08 59.4 15.7 208 52-319 38-266 (443)
332 KOG1645 RING-finger-containing 97.6 0.01 2.2E-07 53.1 17.7 234 5-252 191-461 (463)
333 KOG0309 Conserved WD40 repeat- 97.6 0.00036 7.8E-09 66.6 9.1 292 7-317 24-341 (1081)
334 PF11768 DUF3312: Protein of u 97.6 0.0024 5.2E-08 59.8 14.0 90 115-207 238-331 (545)
335 KOG1832 HIV-1 Vpr-binding prot 97.5 0.00013 2.9E-09 70.8 5.7 177 48-256 1103-1295(1516)
336 COG5170 CDC55 Serine/threonine 97.5 0.0013 2.9E-08 56.8 11.0 79 172-254 170-254 (460)
337 KOG2066 Vacuolar assembly/sort 97.5 0.015 3.3E-07 56.4 19.1 166 19-206 49-234 (846)
338 KOG2395 Protein involved in va 97.5 0.0027 5.8E-08 58.8 13.3 136 57-204 344-499 (644)
339 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.12 2.6E-06 49.9 27.3 182 21-210 71-338 (527)
340 PF05096 Glu_cyclase_2: Glutam 97.4 0.068 1.5E-06 46.1 21.0 115 12-132 49-168 (264)
341 KOG2079 Vacuolar assembly/sort 97.3 0.0012 2.6E-08 65.6 9.0 97 148-252 100-203 (1206)
342 KOG2114 Vacuolar assembly/sort 97.2 0.15 3.2E-06 50.2 22.1 169 73-252 43-243 (933)
343 PF04841 Vps16_N: Vps16, N-ter 97.1 0.24 5.1E-06 46.3 21.9 162 76-253 62-247 (410)
344 KOG1645 RING-finger-containing 97.1 0.0022 4.8E-08 57.2 7.8 91 161-257 175-271 (463)
345 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.6E-08 37.0 5.1 29 219-250 12-40 (40)
346 COG3391 Uncharacterized conser 97.1 0.23 5.1E-06 45.9 25.4 216 11-232 77-311 (381)
347 PF02897 Peptidase_S9_N: Proly 97.1 0.25 5.4E-06 46.2 27.4 241 10-255 126-407 (414)
348 KOG3621 WD40 repeat-containing 97.1 0.0048 1E-07 58.9 10.3 108 138-253 38-155 (726)
349 KOG1920 IkappaB kinase complex 97.1 0.11 2.3E-06 53.1 19.8 192 6-207 108-324 (1265)
350 KOG1008 Uncharacterized conser 97.0 0.00039 8.5E-09 65.4 2.6 194 47-253 57-276 (783)
351 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.069 1.5E-06 39.5 13.4 97 141-248 8-110 (111)
352 PF06433 Me-amine-dh_H: Methyl 96.9 0.27 5.9E-06 44.0 19.3 239 75-326 17-287 (342)
353 KOG4640 Anaphase-promoting com 96.9 0.0044 9.5E-08 58.5 8.3 88 138-229 23-115 (665)
354 KOG4640 Anaphase-promoting com 96.8 0.0062 1.3E-07 57.5 8.7 75 175-256 21-96 (665)
355 smart00320 WD40 WD40 repeats. 96.7 0.003 6.6E-08 35.8 4.0 29 174-203 12-40 (40)
356 KOG1897 Damage-specific DNA bi 96.7 0.82 1.8E-05 46.1 23.6 275 7-320 583-903 (1096)
357 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0059 1.3E-07 37.8 5.1 34 175-210 12-45 (47)
358 KOG2395 Protein involved in va 96.7 0.097 2.1E-06 48.9 14.9 130 113-252 356-500 (644)
359 KOG1897 Damage-specific DNA bi 96.6 0.95 2.1E-05 45.6 26.6 226 72-321 379-619 (1096)
360 COG3391 Uncharacterized conser 96.5 0.68 1.5E-05 42.8 27.9 173 73-255 94-286 (381)
361 PF12894 Apc4_WD40: Anaphase-p 96.5 0.012 2.5E-07 36.4 5.6 31 219-252 11-41 (47)
362 COG3386 Gluconolactonase [Carb 96.5 0.6 1.3E-05 41.7 22.7 174 74-252 46-243 (307)
363 COG0823 TolB Periplasmic compo 96.5 0.26 5.6E-06 46.2 16.8 159 75-243 218-390 (425)
364 KOG3617 WD40 and TPR repeat-co 96.4 0.0097 2.1E-07 58.2 7.3 104 143-253 23-132 (1416)
365 PF08596 Lgl_C: Lethal giant l 96.4 0.52 1.1E-05 43.7 18.2 179 7-194 86-326 (395)
366 KOG3617 WD40 and TPR repeat-co 96.3 0.016 3.5E-07 56.7 8.2 87 112-205 40-131 (1416)
367 PF10168 Nup88: Nuclear pore c 96.3 0.33 7.2E-06 48.4 17.5 82 175-258 85-185 (717)
368 PF06977 SdiA-regulated: SdiA- 96.3 0.61 1.3E-05 40.2 23.4 187 48-249 23-247 (248)
369 PF14583 Pectate_lyase22: Olig 96.1 1.1 2.5E-05 40.9 22.7 92 158-252 263-381 (386)
370 PRK13616 lipoprotein LpqB; Pro 96.0 0.94 2E-05 44.4 18.6 107 140-250 354-474 (591)
371 PF08596 Lgl_C: Lethal giant l 96.0 0.22 4.7E-06 46.2 13.5 76 175-252 87-173 (395)
372 COG3490 Uncharacterized protei 96.0 0.43 9.4E-06 41.3 14.0 81 14-94 120-220 (366)
373 COG0823 TolB Periplasmic compo 95.9 0.32 7E-06 45.5 14.6 133 113-255 218-361 (425)
374 PF06977 SdiA-regulated: SdiA- 95.7 1.3 2.7E-05 38.3 21.4 151 95-252 22-201 (248)
375 PF05694 SBP56: 56kDa selenium 95.7 1.8 4E-05 40.1 24.0 192 59-258 88-348 (461)
376 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.65 1.4E-05 34.4 14.4 94 57-162 13-109 (111)
377 KOG2444 WD40 repeat protein [G 95.5 0.074 1.6E-06 44.4 7.6 100 149-256 72-181 (238)
378 KOG3621 WD40 repeat-containing 95.4 0.11 2.4E-06 49.9 9.2 122 175-316 34-155 (726)
379 PF10313 DUF2415: Uncharacteri 95.3 0.066 1.4E-06 32.1 5.0 34 221-254 2-35 (43)
380 PRK13616 lipoprotein LpqB; Pro 95.3 1.9 4.1E-05 42.3 17.9 110 138-254 399-527 (591)
381 PF00930 DPPIV_N: Dipeptidyl p 95.3 2.2 4.9E-05 38.9 22.5 215 16-255 1-269 (353)
382 PF00930 DPPIV_N: Dipeptidyl p 95.3 0.085 1.8E-06 48.3 8.1 89 158-251 22-130 (353)
383 KOG4649 PQQ (pyrrolo-quinoline 95.2 1.7 3.8E-05 37.2 18.6 107 57-173 21-129 (354)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.2 3.2 6.9E-05 40.2 27.7 225 21-256 122-494 (527)
385 COG3823 Glutamine cyclotransfe 95.2 1.5 3.3E-05 36.3 15.0 157 73-240 66-247 (262)
386 TIGR03074 PQQ_membr_DH membran 95.1 4.4 9.4E-05 41.1 22.2 140 73-213 268-485 (764)
387 KOG1008 Uncharacterized conser 95.0 0.0042 9.1E-08 58.7 -1.1 154 6-168 101-276 (783)
388 PF08728 CRT10: CRT10; InterP 95.0 1.5 3.3E-05 43.4 15.9 145 104-251 49-245 (717)
389 KOG2079 Vacuolar assembly/sort 94.9 0.13 2.8E-06 51.9 8.6 66 185-256 98-164 (1206)
390 COG3386 Gluconolactonase [Carb 94.7 3 6.5E-05 37.3 22.8 97 140-243 167-276 (307)
391 COG3823 Glutamine cyclotransfe 94.7 0.69 1.5E-05 38.3 10.8 90 30-126 70-163 (262)
392 PF14870 PSII_BNR: Photosynthe 94.1 4 8.6E-05 36.4 26.4 221 5-246 14-255 (302)
393 PF02897 Peptidase_S9_N: Proly 94.1 0.89 1.9E-05 42.4 12.2 110 140-254 128-262 (414)
394 KOG2444 WD40 repeat protein [G 93.8 0.073 1.6E-06 44.4 3.5 97 73-172 38-137 (238)
395 PF03022 MRJP: Major royal jel 93.7 4.7 0.0001 35.7 19.4 155 74-232 33-248 (287)
396 PF08728 CRT10: CRT10; InterP 93.6 5.9 0.00013 39.4 16.7 119 175-315 101-246 (717)
397 COG3490 Uncharacterized protei 93.6 4.7 0.0001 35.2 18.4 67 175-250 280-346 (366)
398 PF15390 DUF4613: Domain of un 93.5 3.5 7.6E-05 39.5 14.3 139 95-252 20-186 (671)
399 smart00036 CNH Domain found in 93.4 5.4 0.00012 35.6 21.9 63 15-83 9-73 (302)
400 PF14727 PHTB1_N: PTHB1 N-term 93.4 6.9 0.00015 36.6 23.9 128 73-203 45-202 (418)
401 PF10313 DUF2415: Uncharacteri 93.0 0.42 9E-06 28.7 5.0 31 175-206 1-34 (43)
402 PF05694 SBP56: 56kDa selenium 92.9 8.1 0.00018 36.0 22.1 188 18-208 86-345 (461)
403 KOG4460 Nuclear pore complex, 92.7 1.5 3.3E-05 41.2 10.6 82 175-256 104-202 (741)
404 PF12234 Rav1p_C: RAVE protein 92.6 2.8 6.1E-05 41.1 12.9 95 105-204 41-155 (631)
405 PF12234 Rav1p_C: RAVE protein 92.2 5.4 0.00012 39.2 14.2 71 175-250 30-102 (631)
406 PHA02713 hypothetical protein; 91.9 13 0.00029 36.3 21.1 187 58-254 303-535 (557)
407 PF07569 Hira: TUP1-like enhan 91.9 1 2.2E-05 38.1 8.1 61 54-121 18-95 (219)
408 TIGR02276 beta_rpt_yvtn 40-res 91.9 1.1 2.5E-05 26.3 6.2 33 184-216 1-33 (42)
409 PRK10115 protease 2; Provision 91.8 16 0.00034 36.8 28.8 237 10-254 129-396 (686)
410 PF07569 Hira: TUP1-like enhan 91.7 1.4 3.1E-05 37.2 8.8 66 182-252 18-95 (219)
411 PF14781 BBS2_N: Ciliary BBSom 91.5 5.2 0.00011 30.8 13.2 55 74-128 19-88 (136)
412 COG3204 Uncharacterized protei 91.1 5.7 0.00012 34.8 11.7 78 175-257 86-163 (316)
413 PHA03098 kelch-like protein; P 91.1 16 0.00034 35.5 19.2 186 59-253 295-512 (534)
414 PF03022 MRJP: Major royal jel 91.0 11 0.00023 33.5 14.1 135 114-256 35-219 (287)
415 KOG1900 Nuclear pore complex, 89.6 18 0.00039 38.2 15.5 142 105-254 91-274 (1311)
416 KOG3630 Nuclear pore complex, 89.5 6.7 0.00014 40.7 12.2 81 157-242 176-263 (1405)
417 COG5276 Uncharacterized conser 89.1 15 0.00033 32.3 18.6 156 87-255 79-244 (370)
418 PHA02713 hypothetical protein; 88.8 25 0.00054 34.4 19.0 117 75-195 272-408 (557)
419 PF14761 HPS3_N: Hermansky-Pud 88.5 14 0.0003 31.0 16.4 144 98-252 21-214 (215)
420 PF10647 Gmad1: Lipoprotein Lp 88.4 16 0.00034 31.6 14.5 141 96-245 25-188 (253)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 88.0 23 0.0005 33.1 26.3 39 175-214 308-346 (415)
422 PF10168 Nup88: Nuclear pore c 87.8 17 0.00036 36.7 13.9 68 137-208 86-182 (717)
423 KOG2280 Vacuolar assembly/sort 87.6 32 0.00069 34.3 16.6 153 50-214 85-255 (829)
424 PF14157 YmzC: YmzC-like prote 86.6 2.5 5.4E-05 27.5 4.9 33 297-332 29-61 (63)
425 PF14761 HPS3_N: Hermansky-Pud 86.4 3.3 7.2E-05 34.6 6.9 38 158-195 37-80 (215)
426 PHA03098 kelch-like protein; P 86.4 33 0.00072 33.2 17.6 94 74-170 357-467 (534)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 86.1 12 0.00026 34.9 11.2 40 6-45 306-346 (415)
428 PF11715 Nup160: Nucleoporin N 86.0 4.5 9.7E-05 39.4 8.9 32 222-256 217-252 (547)
429 PF02333 Phytase: Phytase; In 86.0 28 0.00061 32.1 13.3 135 184-333 66-207 (381)
430 KOG1916 Nuclear protein, conta 85.8 4.6 0.0001 40.7 8.6 153 93-252 131-323 (1283)
431 KOG1898 Splicing factor 3b, su 85.7 48 0.001 34.5 20.3 165 76-255 854-1051(1205)
432 PF14870 PSII_BNR: Photosynthe 85.7 26 0.00056 31.3 19.6 138 97-250 64-213 (302)
433 COG5167 VID27 Protein involved 85.6 28 0.0006 33.2 13.0 125 73-205 488-632 (776)
434 KOG1900 Nuclear pore complex, 84.7 19 0.00042 38.0 12.6 128 73-206 97-273 (1311)
435 PF02333 Phytase: Phytase; In 84.3 34 0.00074 31.5 21.2 175 73-254 76-292 (381)
436 PF09826 Beta_propel: Beta pro 83.9 44 0.00095 32.4 26.1 57 199-259 306-362 (521)
437 PF10214 Rrn6: RNA polymerase 83.4 57 0.0012 33.4 22.3 114 134-255 146-279 (765)
438 PF08801 Nucleoporin_N: Nup133 82.7 42 0.00091 31.4 14.5 30 221-253 191-220 (422)
439 KOG1898 Splicing factor 3b, su 82.4 67 0.0015 33.5 15.4 124 30-155 855-994 (1205)
440 KOG4499 Ca2+-binding protein R 82.1 17 0.00037 30.9 9.3 88 11-105 161-264 (310)
441 KOG1916 Nuclear protein, conta 82.0 1.6 3.4E-05 43.9 3.7 89 158-252 152-265 (1283)
442 COG4247 Phy 3-phytase (myo-ino 81.9 33 0.00072 29.6 12.4 146 176-334 57-205 (364)
443 PF12657 TFIIIC_delta: Transcr 81.7 14 0.00031 29.8 8.9 29 297-327 103-131 (173)
444 PF12657 TFIIIC_delta: Transcr 81.6 11 0.00024 30.5 8.1 33 221-253 87-122 (173)
445 KOG4499 Ca2+-binding protein R 81.2 34 0.00073 29.3 18.7 85 140-228 162-262 (310)
446 COG5167 VID27 Protein involved 81.0 51 0.0011 31.5 12.8 127 114-253 491-633 (776)
447 PF01731 Arylesterase: Arylest 79.5 8.9 0.00019 27.1 5.9 31 175-205 54-84 (86)
448 PF11715 Nup160: Nucleoporin N 79.2 4.6 9.9E-05 39.3 6.1 37 176-213 216-256 (547)
449 PF09826 Beta_propel: Beta pro 79.2 64 0.0014 31.3 23.9 169 72-253 301-519 (521)
450 PF10647 Gmad1: Lipoprotein Lp 78.7 43 0.00093 29.0 15.0 112 139-254 27-146 (253)
451 PF14781 BBS2_N: Ciliary BBSom 78.3 29 0.00063 26.8 12.4 112 10-128 1-132 (136)
452 PRK13684 Ycf48-like protein; P 78.1 53 0.0012 29.7 18.0 143 96-250 174-329 (334)
453 PF07995 GSDH: Glucose / Sorbo 77.8 39 0.00084 30.5 11.3 98 139-244 5-135 (331)
454 PF12341 DUF3639: Protein of u 77.8 6.7 0.00015 21.0 3.7 25 221-250 3-27 (27)
455 TIGR02276 beta_rpt_yvtn 40-res 77.7 11 0.00025 21.8 5.8 34 105-138 4-39 (42)
456 KOG4441 Proteins containing BT 77.2 77 0.0017 31.2 18.6 184 59-253 285-500 (571)
457 PF10395 Utp8: Utp8 family; I 75.9 89 0.0019 31.1 17.7 156 7-170 129-308 (670)
458 PF10214 Rrn6: RNA polymerase 73.9 1.1E+02 0.0024 31.3 17.8 108 7-122 145-277 (765)
459 TIGR03074 PQQ_membr_DH membran 73.6 1.1E+02 0.0024 31.2 22.0 183 73-256 202-481 (764)
460 PLN00033 photosystem II stabil 72.2 85 0.0018 29.3 30.5 101 140-250 243-354 (398)
461 KOG3522 Predicted guanine nucl 71.7 39 0.00085 34.1 9.9 85 164-256 614-701 (925)
462 TIGR02604 Piru_Ver_Nterm putat 71.2 84 0.0018 28.8 13.8 60 175-241 124-202 (367)
463 PF14583 Pectate_lyase22: Olig 71.1 88 0.0019 28.9 17.6 195 34-232 16-250 (386)
464 PF07676 PD40: WD40-like Beta 71.0 12 0.00027 21.4 4.3 26 221-249 10-38 (39)
465 KOG3611 Semaphorins [Signal tr 70.8 35 0.00075 34.5 9.6 69 177-248 410-489 (737)
466 KOG2377 Uncharacterized conser 70.1 91 0.002 29.5 11.3 77 174-256 66-144 (657)
467 KOG4441 Proteins containing BT 69.0 1.2E+02 0.0027 29.8 21.0 223 18-252 284-546 (571)
468 smart00564 PQQ beta-propeller 68.1 14 0.00031 20.1 4.0 25 188-213 8-32 (33)
469 TIGR03118 PEPCTERM_chp_1 conse 67.9 90 0.002 27.9 22.8 70 158-229 221-307 (336)
470 PF03088 Str_synth: Strictosid 67.5 23 0.00049 25.2 5.6 46 157-202 35-85 (89)
471 PF01436 NHL: NHL repeat; Int 66.7 17 0.00036 19.3 3.8 24 223-249 5-28 (28)
472 COG4880 Secreted protein conta 65.3 1.2E+02 0.0026 28.4 15.0 147 75-231 406-577 (603)
473 PF11725 AvrE: Pathogenicity f 64.6 81 0.0017 34.7 11.0 219 78-329 303-530 (1774)
474 KOG1896 mRNA cleavage and poly 61.0 2.4E+02 0.0051 30.3 17.3 166 76-253 1005-1214(1366)
475 PF01011 PQQ: PQQ enzyme repea 61.0 28 0.00061 19.9 4.4 27 189-216 3-29 (38)
476 KOG2377 Uncharacterized conser 60.8 69 0.0015 30.2 8.7 31 219-252 66-96 (657)
477 COG5290 IkappaB kinase complex 60.3 37 0.00081 34.2 7.3 33 74-106 315-348 (1243)
478 TIGR02604 Piru_Ver_Nterm putat 59.6 1.4E+02 0.0031 27.3 15.7 106 96-201 73-210 (367)
479 TIGR03032 conserved hypothetic 59.0 1.4E+02 0.003 26.9 12.0 103 116-230 188-315 (335)
480 KOG3630 Nuclear pore complex, 58.3 84 0.0018 33.2 9.5 120 175-317 101-230 (1405)
481 KOG2247 WD40 repeat-containing 56.5 2.5 5.3E-05 39.6 -1.1 125 112-248 55-184 (615)
482 PF14727 PHTB1_N: PTHB1 N-term 55.4 1.8E+02 0.004 27.3 31.0 264 18-320 36-365 (418)
483 PF03088 Str_synth: Strictosid 54.3 76 0.0016 22.5 8.1 46 194-246 35-81 (89)
484 PHA02790 Kelch-like protein; P 54.2 2E+02 0.0044 27.5 19.9 178 59-253 272-471 (480)
485 PF01731 Arylesterase: Arylest 53.9 25 0.00055 24.8 3.9 30 222-253 56-85 (86)
486 KOG2109 WD40 repeat protein [G 53.2 7.1 0.00015 38.0 1.3 68 173-245 314-391 (788)
487 COG5308 NUP170 Nuclear pore co 52.9 2.5E+02 0.0053 29.2 11.5 142 105-255 94-278 (1263)
488 TIGR03606 non_repeat_PQQ dehyd 52.5 2.1E+02 0.0047 27.2 11.6 56 175-231 30-90 (454)
489 PF10433 MMS1_N: Mono-function 52.2 2.2E+02 0.0049 27.3 19.9 228 57-318 221-479 (504)
490 COG4257 Vgb Streptogramin lyas 51.9 1.7E+02 0.0037 25.8 11.8 109 139-254 65-188 (353)
491 KOG4460 Nuclear pore complex, 51.1 2.4E+02 0.0052 27.3 11.8 26 9-34 105-130 (741)
492 KOG2109 WD40 repeat protein [G 51.0 12 0.00026 36.5 2.5 76 174-252 492-576 (788)
493 PF14269 Arylsulfotran_2: Aryl 50.6 1.8E+02 0.004 25.8 16.2 72 175-251 144-219 (299)
494 PF05787 DUF839: Bacterial pro 50.1 43 0.00094 32.5 6.1 27 211-240 493-519 (524)
495 TIGR03606 non_repeat_PQQ dehyd 49.0 2.4E+02 0.0053 26.8 12.6 45 140-186 34-90 (454)
496 PF05935 Arylsulfotrans: Aryls 48.0 99 0.0021 29.6 8.2 31 221-254 272-303 (477)
497 COG3204 Uncharacterized protei 46.6 2.1E+02 0.0046 25.4 19.1 151 49-210 88-267 (316)
498 PRK13684 Ycf48-like protein; P 44.8 2.4E+02 0.0052 25.5 29.1 101 137-247 174-283 (334)
499 PF08801 Nucleoporin_N: Nup133 44.3 2.7E+02 0.0059 26.0 17.4 31 175-206 190-220 (422)
500 COG3211 PhoX Predicted phospha 43.3 62 0.0013 31.4 5.7 60 177-240 502-571 (616)
No 1
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=9.5e-50 Score=333.55 Aligned_cols=311 Identities=30% Similarity=0.504 Sum_probs=275.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
+.+..+++||+|.++|++|.+.|++||++++.++... ...++..+++|+|..|++++++||.+|+++.++|.|||-..
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 4557789999999999999999999999999876443 33456889999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECC-CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEE
Q 019672 85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV 163 (337)
Q Consensus 85 ~~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i 163 (337)
.+++.++++.++|.+|.+.+++++++..++|+||.+. +.+.++.+++..||.++|++++.....+||++|. .-|+|+|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~-k~GqvQi 163 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF-KTGQVQI 163 (346)
T ss_pred CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC-ccceEEE
Confidence 9999999999999999999999999999999999998 7799999999999999999999999999999998 4799999
Q ss_pred EEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccE
Q 019672 164 YNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 236 (337)
Q Consensus 164 ~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~ 236 (337)
-|+...+. .|.+.|.|++++.+|.++||+|..|++|||||..+|++++++++|..++.|++|+||||+. +
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s---~ 240 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS---W 240 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc---E
Confidence 99976654 3669999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceee---eeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 237 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL---RNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 237 las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
||++|+.||||||.++.....+....+..+...++|+++.+.|+.+.+.+. +..++++.+.+.+++.+.||+++.+.
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 999999999999999865443321112222334889999999999876553 34566788889999999999999999
Q ss_pred EecCCCCe
Q 019672 314 FSINNCCE 321 (337)
Q Consensus 314 ~~~~~~~~ 321 (337)
++++++++
T Consensus 321 f~~~~~g~ 328 (346)
T KOG2111|consen 321 FDPKNGGE 328 (346)
T ss_pred eccccccc
Confidence 99998875
No 2
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=2.3e-47 Score=324.86 Aligned_cols=321 Identities=41% Similarity=0.638 Sum_probs=278.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
.....+..+.||+|...|++|+.+|.++|+.++..+.+.....++.+++++|++.++++++.. ..+.+++.+++.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK 77 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence 345678889999999999999999999999999888777777899999999999999999984 348999999999
Q ss_pred CCEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCCccEEEEcCCCCccEEEE
Q 019672 85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLV 163 (337)
Q Consensus 85 ~~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i 163 (337)
+..++++.++++|.++.++.++++|+..+.|+|||++++++++++.+. +++.++++++++..++++|++++.+.|.|.+
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 999999999999999999999999999888999999999999999776 8999999999999999999999888999999
Q ss_pred EEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEE
Q 019672 164 YNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV 238 (337)
Q Consensus 164 ~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~la 238 (337)
||+.+.+.+ |++++.|++|+|+|.+|||||+.|++||||.+.+|+++++|+||.....|++|+||||++ +|+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~ 234 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLA 234 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEE
Confidence 999887653 669999999999999999999999999999999999999999998888899999999999 999
Q ss_pred EEeCCCcEEEEecCCCcccCCC--Ccc-------cccccccccccceeecccccceeee--------eccCCC--cccCE
Q 019672 239 ATSSSGSLHVFSPGFAINQRRG--GRT-------SSILGSILPESVNEVLDPADHHVLR--------NAFPAG--VKRAS 299 (337)
Q Consensus 239 s~s~dg~v~iw~l~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~w~~~~~~~~~--------~~~~~~--~~~~~ 299 (337)
+.|+.+|||||.|++....+.- ... +.....++|.++.++|+..+.+.-+ +.+..+ ++.++
T Consensus 235 ~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~ 314 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR 314 (391)
T ss_pred EecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence 9999999999999876543321 000 1222347788888888876643311 122222 45789
Q ss_pred EEEEEeCCcEEEEEEecCCCCeeceEEeeeeeeccc
Q 019672 300 VSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTK 335 (337)
Q Consensus 300 l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
+.+++.||.+++|+++++++++ |.+.+++.++..
T Consensus 315 v~vas~dG~~y~y~l~~~~gGe--c~lik~h~~~~~ 348 (391)
T KOG2110|consen 315 VLVASYDGHLYSYRLPPKEGGE--CALIKRHFLDGS 348 (391)
T ss_pred EEEEEcCCeEEEEEcCCCCCce--eEEEEeeccCCc
Confidence 9999999999999999998876 999898877653
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-35 Score=252.18 Aligned_cols=282 Identities=17% Similarity=0.165 Sum_probs=206.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCC-----------C
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAG-----------E 68 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g-----------~ 68 (337)
..+|.++|.|++|+|+|+.|++|+.|. +|+||+++...++....| -+.++++.+++..++..+-. .
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 458999999999999999999998775 699999998777765443 34455555544433221110 0
Q ss_pred -----------------------CC-------CCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE--CCeE
Q 019672 69 -----------------------QP-------SLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL--REKT 115 (337)
Q Consensus 69 -----------------------~~-------~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~--d~~i 115 (337)
.| .+.||+|+|||+..++++..+..+. +|+++.+-+++++..+ |++|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 00 1347777777777777777665444 7888888766665544 7889
Q ss_pred EEEECCCCeeeeeecCCCCCceEEEEe---------eCCCc-------------------------cEEEEcCCCCccEE
Q 019672 116 YIYDANTLAILDTIDTVPNLKGLCAFS---------PSLNA-------------------------CFLAVPASTTKGSV 161 (337)
Q Consensus 116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------------------~~la~~~~~~dg~v 161 (337)
++|+...++..+++..|.+-...++++ +++.+ ..+++++ .|.++
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl 348 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL 348 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence 999888888888887766543334443 11111 2467666 59999
Q ss_pred EEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672 162 LVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235 (337)
Q Consensus 162 ~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~ 235 (337)
.+|+....+. .|+.-|+.+.||||++++|+||-|.+ ||+||.++|+.+..|+ | |-+.|+.++||.|.+
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfR-G-Hv~~VYqvawsaDsR--- 422 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFR-G-HVAAVYQVAWSADSR--- 422 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhh-h-ccceeEEEEeccCcc---
Confidence 9999765542 25588999999999999999999987 6999999999999996 3 367899999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
+|++||.|.|+++|++++.+- ..-||..-.+ +.++.+.|++.++++|..|..+++|.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl-----------~~DLpGh~DE----------Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKL-----------KQDLPGHADE----------VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeeeeee-----------cccCCCCCce----------EEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999987653 2234432222 23445567779999999999999884
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=256.75 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=217.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
-+...||..+.|++|++.|++|+-.|. +||+..+..++....+|. +..+.+.+..+.+.++++ +.||++++|
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~-----s~Dgtvklw 246 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA-----SADGTVKLW 246 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee-----ccCCceeee
Confidence 367789999999999999999999986 999999887776665544 444444444234444444 269999999
Q ss_pred ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
++.+..++..++++. .|..++|+|++-++++ |.+-++||+++++.+...+.| ..++..++++++|.+++++|
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGG-- 322 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGG-- 322 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc--ccccceeEecCCCceeeccC--
Confidence 999999998887664 8999999998766665 899999999999877666654 45788889999999999998
Q ss_pred CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec-C
Q 019672 157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ-S 230 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~-d 230 (337)
.|..-+|||+++++.. |..+|.+|+|+|+|..|||||.|++ +||||++..+.++++. .|...|..|.|+| .
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ip--AH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIP--AHSNLVSQVKYSPQE 399 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecc--cccchhhheEecccC
Confidence 5899999999999865 4599999999999999999999998 6999999888888774 3567799999999 5
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEE
Q 019672 231 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 310 (337)
Q Consensus 231 g~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~ 310 (337)
|. +|+++|.|++++||.-.+....+. +......+. .+...+++..+++++.|.+++
T Consensus 400 g~---fL~TasyD~t~kiWs~~~~~~~ks-----------LaGHe~kV~----------s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 400 GY---FLVTASYDNTVKIWSTRTWSPLKS-----------LAGHEGKVI----------SLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred Ce---EEEEcccCcceeeecCCCcccchh-----------hcCCccceE----------EEEeccCCceEEEeccCceee
Confidence 66 999999999999998776544332 111111222 223355668899999999999
Q ss_pred EEE
Q 019672 311 EYI 313 (337)
Q Consensus 311 ~~~ 313 (337)
.|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 984
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-30 Score=212.81 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=199.9
Q ss_pred CCCCCCCeEEEEEcCCCC-EEEEEcCCc-eEEEeCCCC-----cEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672 3 NQSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTG-----RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~-~la~g~~~g-~~vw~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (337)
..+|++.|+.++..+.+. .+..++.|. +.+|++..- .......+ |-+.-+.+..++++...++ .
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s-------w 83 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS-------W 83 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc-------c
Confidence 357899999999998864 456666555 599986543 33333333 3444556666666654333 6
Q ss_pred CceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC--c
Q 019672 74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN--A 147 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 147 (337)
|+++++||+.+++....+..+. .|++++++++.-.+++ |++|.+||+... ...++....+..-+.++.++|+ +
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999999888876554 7999999886544433 899999998654 3344433332345556666555 7
Q ss_pred cEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 148 CFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
.+++.++ .|++|++||+.+.+.. |++.++.+++||||.++|+|+.||.+ .+||++.++.++.+. +...|
T Consensus 163 p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~-~LwdL~~~k~lysl~---a~~~v 236 (315)
T KOG0279|consen 163 PIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA-MLWDLNEGKNLYSLE---AFDIV 236 (315)
T ss_pred cEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE-EEEEccCCceeEecc---CCCeE
Confidence 8888888 7999999999987654 44889999999999999999999984 799999999998884 24679
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCc-ccccccc-cccccceeecccccceeeeeccCCCcccCEE
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR-TSSILGS-ILPESVNEVLDPADHHVLRNAFPAGVKRASV 300 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~-~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l 300 (337)
.+++|+|+.. +|+.+. +..|+|||++.......... ..+...+ -.|... .+++.+++.+|
T Consensus 237 ~sl~fspnry---wL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl--------------slaws~dG~tL 298 (315)
T KOG0279|consen 237 NSLCFSPNRY---WLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL--------------SLAWSADGQTL 298 (315)
T ss_pred eeEEecCCce---eEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEE--------------EEEEcCCCcEE
Confidence 9999999986 666555 44699999987654321100 0000000 011112 23345566899
Q ss_pred EEEEeCCcEEEEEEe
Q 019672 301 SVITYNGYFVEYIFS 315 (337)
Q Consensus 301 ~~~~~dg~~~~~~~~ 315 (337)
++|..||.+++|++.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999874
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=215.37 Aligned_cols=275 Identities=13% Similarity=0.140 Sum_probs=210.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEE--ccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEM--LYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
+.+|.+.|+++.|++|.+++++++.||. .|||.-+..+.+.......-+..+ .++++.++..+ -|+...|
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-------LdN~Csi 123 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-------LDNKCSI 123 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-------cCceeEE
Confidence 4578899999999999999999999985 999988887776666555555544 45555554433 5999999
Q ss_pred EECCCC--C----EEEEEE-cCCceeEEEEcCCeEE-EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC-CccE
Q 019672 80 FNTTTG--T----ALRELN-FLTSILAVRLNKKRLV-IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACF 149 (337)
Q Consensus 80 wd~~~~--~----~~~~~~-~~~~v~~i~~~~~~~~-v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (337)
|++.+. + ..+++. |...+.+..|-++..+ .++ |.+.-+||+++++.+..+..|. ..+.+++..| +...
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~--gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHT--GDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCc--ccEEEEecCCCCCCe
Confidence 999865 2 223343 3446777877555444 444 7899999999999998887654 4677777777 7778
Q ss_pred EEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672 150 LAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 224 (337)
Q Consensus 150 la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 224 (337)
+++++. |+..++||++.+... |+..|++|+|.|+|.-+||||+|++ .|+||++..+.+..+........|++
T Consensus 202 FvSg~c--D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 202 FVSGGC--DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred EEeccc--ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCcee
Confidence 888885 999999999998755 4589999999999999999999998 69999999999988875555567999
Q ss_pred EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672 225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 304 (337)
Q Consensus 225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (337)
++||..|+ +|.+|..|.++.+||.=+++..- .|. +|...+..+...|++--+.+|+
T Consensus 279 v~FS~SGR---lLfagy~d~~c~vWDtlk~e~vg-----------~L~----------GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 279 VAFSKSGR---LLFAGYDDFTCNVWDTLKGERVG-----------VLA----------GHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred EEEccccc---EEEeeecCCceeEeeccccceEE-----------Eee----------ccCCeeEEEEECCCCcEEEecc
Confidence 99999999 99999999999999975443311 111 1111222333356678899999
Q ss_pred eCCcEEEEE
Q 019672 305 YNGYFVEYI 313 (337)
Q Consensus 305 ~dg~~~~~~ 313 (337)
=|-.+++|.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999984
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-30 Score=229.15 Aligned_cols=271 Identities=15% Similarity=0.204 Sum_probs=211.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+....|++++||.+|+.||+|..+|+ ++|+.. |.++.. .+.+++..+.+.-.+++++..+ .|+++.+||
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~-------vD~ttilwd 304 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGG-------VDGTTILWD 304 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEecc-------CCccEEEEe
Confidence 45578999999999999999999997 999976 444433 3445555555544455554433 599999999
Q ss_pred CCCCCEEEEEEcCCce-eEEEEc-CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 82 TTTGTALRELNFLTSI-LAVRLN-KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~v-~~i~~~-~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
..+++....+++++.. .+|.|- .+.++.+. |+.|+|+.+....++.++..|.+ .+.++.++|.+.+|++++ .|
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~S--dD 380 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCS--DD 380 (524)
T ss_pred ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEEec--CC
Confidence 9999998888888755 788884 45555555 89999999988888888877554 588899999999999998 59
Q ss_pred cEEEEEEccCCccc-----ccCceEEEEeCCC---------CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672 159 GSVLVYNVMELHSH-----CEAPLAAIVLSSN---------GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 224 (337)
Q Consensus 159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~d---------g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 224 (337)
++++||.+...... |...|..+.|+|+ +..|++++.|++ +++||+..|.++..|.+ |..+|++
T Consensus 381 ~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVys 457 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYS 457 (524)
T ss_pred CeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEE
Confidence 99999998766544 3367888888875 447999999997 69999999999999964 4678999
Q ss_pred EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672 225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 304 (337)
Q Consensus 225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (337)
|+|||+|+ +||+|+.||.|+||++++.+-.+. +.+. ...+.-.|+.++ +.|.+.-
T Consensus 458 vafS~~g~---ylAsGs~dg~V~iws~~~~~l~~s------~~~~--~~Ifel~Wn~~G--------------~kl~~~~ 512 (524)
T KOG0273|consen 458 VAFSPNGR---YLASGSLDGCVHIWSTKTGKLVKS------YQGT--GGIFELCWNAAG--------------DKLGACA 512 (524)
T ss_pred EEecCCCc---EEEecCCCCeeEeccccchheeEe------ecCC--CeEEEEEEcCCC--------------CEEEEEe
Confidence 99999999 999999999999999987765331 0000 012344566654 7899999
Q ss_pred eCCcEEEEEEe
Q 019672 305 YNGYFVEYIFS 315 (337)
Q Consensus 305 ~dg~~~~~~~~ 315 (337)
+||.+.+.+|.
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 99998887764
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=210.41 Aligned_cols=239 Identities=13% Similarity=0.189 Sum_probs=190.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcE--EEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL--CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
+-+++.|+.+..+||++.||+++...+|+||+.+++. +..+ +...+..+.+..++..+.. |+ .|++++|
T Consensus 37 qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyT--gs-----eDgt~kI 109 (311)
T KOG0315|consen 37 QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYT--GS-----EDGTVKI 109 (311)
T ss_pred ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEe--cC-----CCceEEE
Confidence 3467889999999999999999999999999988753 4444 3356777776666666543 32 6999999
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
||++...+.+.+.+.++|.++.++|+. ++++. ++.|++||+......+++- ++....+..++..+++.+++.+.
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~n-- 186 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAAN-- 186 (311)
T ss_pred EeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEec--
Confidence 999998888899999999999999875 44444 7899999998876555543 33345677888889999999887
Q ss_pred CccEEEEEEccCCcc-----------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-ceeEeeccCCcceeEEE
Q 019672 157 TKGSVLVYNVMELHS-----------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFS 224 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~-----------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~ 224 (337)
..|...+|++..... .|...|..+.+|||+++|||+|.|.+ ++||++.+. +....+. + +..-+..
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~-g-h~rWvWd 263 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLT-G-HQRWVWD 263 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEee-c-CCceEEe
Confidence 489999999876432 13378999999999999999999998 599999987 3333332 2 3456999
Q ss_pred EEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
++||.||+ ||++|+.|+++|+|+++.+++.+
T Consensus 264 c~FS~dg~---YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 264 CAFSADGE---YLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eeeccCcc---EEEecCCCCceeecccccCceee
Confidence 99999999 99999999999999999887654
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-31 Score=245.22 Aligned_cols=235 Identities=16% Similarity=0.230 Sum_probs=193.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEE---------------------------------EEEeeCCEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC---------------------------------YERAVGAFS 50 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~---------------------------------~~~~~~~~~ 50 (337)
.....++|+.|++|++.||.|..+. +++|.+.+.++. +..+.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 3467899999999999999999887 699998753210 111224555
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeee
Q 019672 51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAIL 126 (337)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~ 126 (337)
-+.+.++.++++.++ .|.++|+|.+.+..++..+..+ .||.++.|+|.+...++ |++.++|.....+++
T Consensus 456 g~sFsPd~rfLlScS-------ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCS-------EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred eeeecccccceeecc-------CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 566666666665544 5999999999999998888755 49999999998877766 889999999888888
Q ss_pred eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRV 201 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~v 201 (337)
+.+..|.+ .+-|+.++|+..++|+++ .|.+|++||+.++..+ |+++|.+++|||+|++||+|++||. |++
T Consensus 529 Rifaghls--DV~cv~FHPNs~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~i 603 (707)
T KOG0263|consen 529 RIFAGHLS--DVDCVSFHPNSNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKI 603 (707)
T ss_pred hhhccccc--ccceEEECCcccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEE
Confidence 88876655 455667778888999987 5999999999998754 6699999999999999999999997 689
Q ss_pred EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
||+.+++.+..+.. | .+.|++|.||.||. .||+|+.|++|++||+.+...
T Consensus 604 WDl~~~~~v~~l~~-H-t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 604 WDLANGSLVKQLKG-H-TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEcCCCcchhhhhc-c-cCceeEEEEecCCC---EEEecCCCCeEEEEEchhhcc
Confidence 99999999988864 3 77899999999999 999999999999999976544
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=8.1e-32 Score=233.26 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=196.8
Q ss_pred CCCCCCeEEEEEcCC--CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 4 QSSSYPVFFVSFNQD--NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 4 ~~~~~~v~~~~fs~d--g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
-+|...|.++.|+|. +..+|+|+.|| +++|++++...+..+.+|...+..+.|++++-.+.++ +-|.+-++|
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta-----sfD~tWRlW 288 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA-----SFDSTWRLW 288 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec-----ccccchhhc
Confidence 378899999999998 55799999887 5999999888877776666666566666655555555 369999999
Q ss_pred ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
|+++++.+...+.++ .|.+++|++++-++++ |..-+|||+++++.+-.+..| ...+.+++++|+|.++|+++
T Consensus 289 D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH--~k~I~~V~fsPNGy~lATgs-- 364 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH--IKEILSVAFSPNGYHLATGS-- 364 (459)
T ss_pred ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccc--ccceeeEeECCCceEEeecC--
Confidence 999998877665554 8999999999988877 778999999999998888764 55788999999999999998
Q ss_pred CccEEEEEEccCCccc-----ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672 157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 230 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d 230 (337)
.|++++|||++..+.+ |.+-|+.|.|+| .|.+|+|+|.|++ ++||..+++++++.+. | |..+|.++..+||
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLa-G-He~kV~s~Dis~d 441 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLA-G-HEGKVISLDISPD 441 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhc-C-CccceEEEEeccC
Confidence 5999999999987765 448899999999 7899999999998 6999999999999884 3 4678999999999
Q ss_pred CCcccEEEEEeCCCcEEEEe
Q 019672 231 MQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 231 g~~~~~las~s~dg~v~iw~ 250 (337)
++ ++++++.|.++++|.
T Consensus 442 ~~---~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQ---AIATSSFDRTIKLWR 458 (459)
T ss_pred Cc---eEEEeccCceeeecc
Confidence 99 999999999999995
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.6e-29 Score=232.70 Aligned_cols=295 Identities=13% Similarity=0.169 Sum_probs=220.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC--ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~--g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
-++.+|..++||..|.++|.|+.+ .+-||+..+..-++..+.|-..+.++.++++...+++|+ .|++|+|||.
T Consensus 305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~-----eDgKVKvWn~ 379 (893)
T KOG0291|consen 305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA-----EDGKVKVWNT 379 (893)
T ss_pred cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc-----CCCcEEEEec
Confidence 356789999999999999999887 358999988887777776666666777777655555553 6999999999
Q ss_pred CCCCEEEEEEcC-CceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 83 TTGTALRELNFL-TSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
..|-|+.+++-+ +.|+++.|+..+.++ +. ||+|+.||+...+..+++.. +.+....+++.+|-+.+++.++. ..
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~-d~ 457 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQ-DS 457 (893)
T ss_pred cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeecc-ce
Confidence 999999998654 589999997654333 22 99999999999888888865 56677788888887877776664 45
Q ss_pred cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCC
Q 019672 159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
-.|+||++++++.+ |++||.+++|+|+|..||+||-|.+ ||+||+-... ...++. ....+..++|+|||+
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRPDGK 533 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcCCCC
Confidence 67999999999875 6799999999999999999999998 6999986542 233343 244689999999999
Q ss_pred cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccc---cceeeeeccCCCcccCEEEEEEeCCcE
Q 019672 233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPA---DHHVLRNAFPAGVKRASVSVITYNGYF 309 (337)
Q Consensus 233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~~ 309 (337)
-||++..||.|.+||++...+.-..+......++... .+..... ... .-..+...+|++.|++|+....+
T Consensus 534 ---elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~---~D~~ta~~sa~~K-~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 534 ---ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE---TDRITAENSAKGK-TFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred ---eEEEEEecceEEEEEhhhceeeccccchhhccccccc---cceeehhhcccCC-ceEEEEEcCCCCEEEecCCcccE
Confidence 9999999999999999876654322111111111000 0111110 000 01233446788999999999999
Q ss_pred EEEEEecC
Q 019672 310 VEYIFSIN 317 (337)
Q Consensus 310 ~~~~~~~~ 317 (337)
-+|.++++
T Consensus 607 CiY~v~~~ 614 (893)
T KOG0291|consen 607 CIYDVPEG 614 (893)
T ss_pred EEEECchh
Confidence 99988654
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=200.58 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=200.2
Q ss_pred CEEEEEcCC-ceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC--EEEEEEcC
Q 019672 20 SGFALSTKD-GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALRELNFL 94 (337)
Q Consensus 20 ~~la~g~~~-g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~--~~~~~~~~ 94 (337)
-+|++++-| .+|+|...+|+...+.+. ..+.-+++.++...++..+ .-.||+||+.++. ++.+++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~--------~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG--------NQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc--------CCeeEEEEccCCCCCceeEEecc
Confidence 356776665 479999999999887754 4566678888777776554 4689999998876 57888776
Q ss_pred -CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672 95 -TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170 (337)
Q Consensus 95 -~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~ 170 (337)
.+|.++.|..++-...+ |++++|||++.....+.++.. . .+.++.++|+...|+++. .+|.|++||+....
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-s--pVn~vvlhpnQteLis~d--qsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-S--PVNTVVLHPNQTELISGD--QSGNIRVWDLGENS 157 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-C--CcceEEecCCcceEEeec--CCCcEEEEEccCCc
Confidence 58999999877655544 899999999997777666543 3 355666677777888877 58999999998765
Q ss_pred cccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec----cCCcceeEEEEEeecCCCcccEEEEE
Q 019672 171 SHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR----RGTYPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 171 ~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~----~~~~~~~i~~l~fs~dg~~~~~las~ 240 (337)
..++ .+|.++++.|||++|+.+...|+. .+|++.+++....+. ...|...|..+.||||++ +||++
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c-yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k---~lat~ 233 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC-YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK---YLATC 233 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccE-EEEEccCCCccccceEhhheecccceEEEEEECCCCc---EEEee
Confidence 4433 789999999999999999999995 799998765332221 123455689999999999 99999
Q ss_pred eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 241 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 241 s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
|.|.+++||+++..-. +...+......+|+.++ ..++.+|++++.|+..++|.+...+
T Consensus 234 ssdktv~iwn~~~~~k----------le~~l~gh~rWvWdc~F----------S~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFK----------LELVLTGHQRWVWDCAF----------SADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cCCceEEEEecCCcee----------eEEEeecCCceEEeeee----------ccCccEEEecCCCCceeecccccCc
Confidence 9999999999876511 11122233356888866 6778999999999999999886554
No 13
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-28 Score=197.49 Aligned_cols=234 Identities=15% Similarity=0.228 Sum_probs=183.8
Q ss_pred CCCCCCeEEEEEcCCCCEEE-EEcCCceEEEeCCCCcEEEEEeeCCEEEE--EEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFA-LSTKDGFKIFDSSTGRLCYERAVGAFSIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la-~g~~~g~~vw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
..++++|+.+.||-||++.+ +|++..+++||...+.++.+...++..+. ...++...++.+++ |+.+.+|
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg-------Dk~v~vw 86 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG-------DKAVQVW 86 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------CceEEEE
Confidence 46788999999999999955 45555679999999999888766665554 45556666555444 9999999
Q ss_pred ECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCC--CeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 81 NTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANT--LAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 81 d~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
|+.+|+.++.+..+ ..|..++|+...-++++ |.++++||-+. .++++.+.... .++.++..+. ..++. |
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--D~V~Si~v~~--heIva-G 161 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--DGVSSIDVAE--HEIVA-G 161 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--CceeEEEecc--cEEEe-e
Confidence 99999999998755 58999999988776665 88999999865 46676665433 3555555542 24444 4
Q ss_pred CCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-EEEEEeecC
Q 019672 155 STTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-IFSLSFGQS 230 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~fs~d 230 (337)
+ .||+++.||++.++.... .||+|++|++||+....++-|++ +|+.|-.+|+.++.++ |+...+ =..++++..
T Consensus 162 S-~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYk-Ghkn~eykldc~l~qs 238 (307)
T KOG0316|consen 162 S-VDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQS 238 (307)
T ss_pred c-cCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhc-ccccceeeeeeeeccc
Confidence 4 699999999999987654 89999999999999999999997 6999999999998885 443322 345678877
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCc
Q 019672 231 MQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 231 g~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
.. .+++||.||.|.+|||....
T Consensus 239 dt---hV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 239 DT---HVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ce---eEEeccCCceEEEEEeccce
Confidence 77 89999999999999997654
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.4e-27 Score=207.05 Aligned_cols=272 Identities=18% Similarity=0.210 Sum_probs=202.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
.+|..+|++++|+|++++|++++.++ +++|++.+++.......+ .+..+.+..+.+.+++++ .++.|++|
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i~ 78 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-------SDKTIRLW 78 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-------CCCeEEEE
Confidence 46889999999999999999998666 699999888765554433 333444544444555444 48999999
Q ss_pred ECCCCCEEEEEEcCC-ceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNFLT-SILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
|+.+++.+..+..+. .+.++.++++ .++++. ++.+++||+++++....+..+. ..+.++.+++++.++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-- 154 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSS-- 154 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEc--
Confidence 999887777776544 8999999875 333444 8899999999888877776443 3566777777777887765
Q ss_pred CccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672 157 TKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg 231 (337)
.+|.|.+||+.+.+... ..+|.+++|+|+++.+++++.||. |++||+.+++.+..+.. +...|.+++|+|++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~ 231 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDG 231 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCC
Confidence 48999999998765432 368999999999999999999997 69999999888877642 34579999999998
Q ss_pred CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672 232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 311 (337)
Q Consensus 232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~ 311 (337)
. ++++++.||.|++|++.+...... +...... ...+.+.++++.+++++.||.+++
T Consensus 232 ~---~~~~~~~~~~i~i~~~~~~~~~~~-------~~~~~~~--------------i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 232 Y---LLASGSEDGTIRVWDLRTGECVQT-------LSGHTNS--------------VTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred c---EEEEEcCCCcEEEEEcCCceeEEE-------ccccCCc--------------EEEEEECCCCCEEEEecCCCeEEe
Confidence 7 888888899999999976443221 0000000 111222444588999999999999
Q ss_pred EE
Q 019672 312 YI 313 (337)
Q Consensus 312 ~~ 313 (337)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 84
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5e-28 Score=222.90 Aligned_cols=274 Identities=12% Similarity=0.135 Sum_probs=220.0
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccC--CCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
...|++.+|++.-..|++|...|+ .+|.+....+++........+..+.++ ++.+++.++ .-+.+-||+++
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~------klgQLlVweWq 338 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS------KLGQLLVWEWQ 338 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC------ccceEEEEEee
Confidence 378999999999999999999996 899999999999887666666666666 788888765 36799999999
Q ss_pred CCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 84 TGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 84 ~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
+..-+.+...+ ..+.+++++|++..+++ |++|+|||...+-++.++..|.. ++.++.+...+..+.+++ -||
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssS--LDG 414 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSS--LDG 414 (893)
T ss_pred ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEee--cCC
Confidence 98887776644 47999999999766665 89999999999999999876544 677788877788888877 599
Q ss_pred EEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 160 SVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 160 ~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
+|+.||+...+...+ ....|++.+|.|..+..|+.|.=-|.||++++|+.+-.+. | |.++|.+++|+|+|.
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-G-HEgPVs~l~f~~~~~- 491 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-G-HEGPVSGLSFSPDGS- 491 (893)
T ss_pred eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-C-CCCcceeeEEccccC-
Confidence 999999987665433 4568999999999999999997668999999999998874 4 478999999999999
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
.||++|.|.||++||+=...... ..++ ...+ +..+.+.|+++.|++.+.||.+.+|+
T Consensus 492 --~LaS~SWDkTVRiW~if~s~~~v----------Etl~-i~sd----------vl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 492 --LLASGSWDKTVRIWDIFSSSGTV----------ETLE-IRSD----------VLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred --eEEeccccceEEEEEeeccCcee----------eeEe-eccc----------eeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99999999999999984321100 0000 0011 12344577889999999999999998
Q ss_pred Eec
Q 019672 314 FSI 316 (337)
Q Consensus 314 ~~~ 316 (337)
...
T Consensus 549 ~~~ 551 (893)
T KOG0291|consen 549 IKE 551 (893)
T ss_pred hhh
Confidence 753
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.9e-28 Score=199.88 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=179.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
..+|...|..+..++||+++.+++.|+ +++||+.+++....+.+| .+..+++..+... +++| +.|++|++
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q--ivSG-----SrDkTikl 131 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ--IVSG-----SRDKTIKL 131 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce--eecC-----CCcceeee
Confidence 346788899999999999988888877 599999999765555444 4444555444444 4555 37999999
Q ss_pred EECCCCCEEEEEE-c--CCceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 80 FNTTTGTALRELN-F--LTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 80 wd~~~~~~~~~~~-~--~~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
||...+ +..++. . ..=|.++.|+|+ ..+++. |+++++||+++.+..+.+..+. ..+..+..+||+.+++
T Consensus 132 wnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~--~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 132 WNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS--GYVNTVTVSPDGSLCA 208 (315)
T ss_pred eeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc--ccEEEEEECCCCCEEe
Confidence 998754 444443 2 234899999987 344433 9999999999988877776544 4566777788999999
Q ss_pred EcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc-------ce
Q 019672 152 VPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-------PS 220 (337)
Q Consensus 152 ~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~-------~~ 220 (337)
++| .||.+.+||+..++.... .+|++++|+|+...|+.+...+ |+|||+.++..+.+++.... ..
T Consensus 209 sGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~v~~l~~d~~g~s~~~~~~ 284 (315)
T KOG0279|consen 209 SGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAVVEELKLDGIGPSSKAGDP 284 (315)
T ss_pred cCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccchhhhhhccccccccccccCCc
Confidence 988 599999999998886543 8899999999988888777654 79999999998877653211 12
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
...+++||+||+ .|.+|-.|+.|++|.+.
T Consensus 285 ~clslaws~dG~---tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 285 ICLSLAWSADGQ---TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEEcCCCc---EEEeeecCCcEEEEEee
Confidence 367899999999 99999999999999875
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.2e-27 Score=209.88 Aligned_cols=277 Identities=16% Similarity=0.177 Sum_probs=219.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe-----eCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-----VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v 77 (337)
..|..-|.|+.|+|||++||+.+.|+ +.+||=.+++++..+. .+++.-+.+.+++..++.+++ |.++
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-------Dkt~ 259 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-------DKTI 259 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC-------CceE
Confidence 35667899999999999999776665 7999999999887654 356777788888888888876 9999
Q ss_pred EEEECCCCCEEEEEEcCCce----eEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 78 CLFNTTTGTALRELNFLTSI----LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v----~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
+|||..+++++.++.....| ..+.|.++.++.+. +|.|.+++...+..++.+..| ...+.+++.++++.++.+
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYS 337 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEe
Confidence 99999999999999876643 44556677777666 999999999999888888755 457888999999999999
Q ss_pred cCCCCccEEEEEEccCCccc------cc----------------------------------------------------
Q 019672 153 PASTTKGSVLVYNVMELHSH------CE---------------------------------------------------- 174 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~~------~~---------------------------------------------------- 174 (337)
+++ ||.|.-||..++..- |.
T Consensus 338 gsy--DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 338 GSY--DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred ecc--CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 885 999999998543210 00
Q ss_pred ----------------------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672 175 ----------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS 226 (337)
Q Consensus 175 ----------------------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~ 226 (337)
....+++++|+++.+|.|++||. ++||.+..+++..+.....|+++|++++
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEE
Confidence 12368999999999999999998 6999998776544433334678899999
Q ss_pred eecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC
Q 019672 227 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN 306 (337)
Q Consensus 227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d 306 (337)
||||+. |||++...+.|-+||+....... ..|.+ |....+.+++.|++.++++|+.|
T Consensus 495 ySpd~~---yla~~Da~rkvv~yd~~s~~~~~------------------~~w~F--HtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 495 YSPDGA---YLAAGDASRKVVLYDVASREVKT------------------NRWAF--HTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred ECCCCc---EEEEeccCCcEEEEEcccCceec------------------ceeee--eeeeEEEEEeCCCceEEEecccc
Confidence 999999 99999999999999987654311 12322 33445666777777999999999
Q ss_pred CcEEEEEEe
Q 019672 307 GYFVEYIFS 315 (337)
Q Consensus 307 g~~~~~~~~ 315 (337)
-.+.+|+++
T Consensus 552 t~Viiysv~ 560 (603)
T KOG0318|consen 552 TNVIIYSVK 560 (603)
T ss_pred ceEEEEEcc
Confidence 999999984
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.9e-28 Score=225.05 Aligned_cols=277 Identities=16% Similarity=0.237 Sum_probs=205.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+...|.++.|+++|+.+++++.++ +++|+.++++ ++.....+...+..+.|.++...++++ +.|++|+|||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~-----s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG-----SDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe-----cCCceEEEeec
Confidence 367899999999999999887777 5999997777 555544444444444444444344444 26999999999
Q ss_pred -CCCCEEEEEEc-CCceeEEEEcCCeE-EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 83 -TTGTALRELNF-LTSILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 83 -~~~~~~~~~~~-~~~v~~i~~~~~~~-~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
..+..++++.. ...|.++.|+++.. ++.. |++|+|||+++++.+..+..+.+ .+.++++++++.++++++ .
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~--~is~~~f~~d~~~l~s~s--~ 308 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD--GISGLAFSPDGNLLVSAS--Y 308 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC--ceEEEEECCCCCEEEEcC--C
Confidence 55577787754 45899999998773 3333 88999999999999999987655 677788888999999987 4
Q ss_pred ccEEEEEEccCCcc--cc-----c-C-ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-eeEEEEEe
Q 019672 158 KGSVLVYNVMELHS--HC-----E-A-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSLSF 227 (337)
Q Consensus 158 dg~v~i~d~~~~~~--~~-----~-~-~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~l~f 227 (337)
||.|+|||+.++.. .. . . +++++.|+|+|.+|++++.|++ +++||+..+..+..+...... ..+.+..+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecccc
Confidence 99999999999882 21 1 3 6999999999999999999997 699999999988877543322 25666777
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE--e
Q 019672 228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT--Y 305 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~--~ 305 (337)
+++++ ++.+|+.|+.|++|++.+.......+... .+......|++ ..+.+++.+ .
T Consensus 388 ~~~~~---~i~sg~~d~~v~~~~~~s~~~~~~l~~h~------~~~~~~~~~~~--------------~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 388 STGGK---LIYSGSEDGSVYVWDSSSGGILQRLEGHS------KAAVSDLSSHP--------------TENLIASSSFEG 444 (456)
T ss_pred cCCCC---eEEEEeCCceEEEEeCCccchhhhhcCCC------CCceeccccCC--------------CcCeeeecCcCC
Confidence 89999 99999999999999998754433211110 11112223333 336666666 6
Q ss_pred CCcEEEEEEe
Q 019672 306 NGYFVEYIFS 315 (337)
Q Consensus 306 dg~~~~~~~~ 315 (337)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8999999654
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.2e-28 Score=201.60 Aligned_cols=274 Identities=14% Similarity=0.126 Sum_probs=203.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC-cEEEEEeeCCEEEEEEcc--CCCEEEEEeCCCCCCCCCce
Q 019672 1 MSNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCYERAVGAFSIVEMLY--SSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 1 ~~~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~d~~ 76 (337)
|-.+.|+++|+.+.|+|+|++||+|+.|. +.+|++..- +......+|.-++.++.+ +++.+..++ .|++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g-------tDk~ 113 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG-------TDKT 113 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec-------CCce
Confidence 34678999999999999999999998876 589996443 333344455555555544 455555444 5999
Q ss_pred EEEEECCCCCEEEEEEcCCce-eEEEEcCCe-EEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 77 LCLFNTTTGTALRELNFLTSI-LAVRLNKKR-LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 77 v~iwd~~~~~~~~~~~~~~~v-~~i~~~~~~-~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
|+.||.++|+.+.....+..+ ..+.....+ .++++ |+++++||++....++++. +...+.++.+...+..+.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---NKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---cceeEEEEEeccccccee
Confidence 999999999999998877654 444433322 33333 7899999999887776663 445688899988888888
Q ss_pred EcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC----ceeEeeccCCccee-
Q 019672 152 VPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTYPST- 221 (337)
Q Consensus 152 ~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~----~~~~~~~~~~~~~~- 221 (337)
++| -|+.|++||++.....+ ..+|+.+..+|+|.++.+-+.|.+ +|+||++.. .++..+..+.|.-+
T Consensus 191 sgg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 191 SGG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred ecc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence 888 59999999998877553 489999999999999999999987 699999743 23555543333322
Q ss_pred -EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672 222 -IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 300 (337)
Q Consensus 222 -i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l 300 (337)
...++|||++. ++.+|+.|..+++||..... +.-.+|. +...++.+.|.|...-|
T Consensus 268 nlL~cswsp~~~---~i~ags~dr~vyvwd~~~r~-----------~lyklpG----------h~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 268 NLLKCSWSPNGT---KITAGSADRFVYVWDTTSRR-----------ILYKLPG----------HYGSVNEVDFHPTEPII 323 (338)
T ss_pred hcceeeccCCCC---ccccccccceEEEeeccccc-----------EEEEcCC----------cceeEEEeeecCCCcEE
Confidence 56679999999 99999999999999975321 1112332 33345666677887889
Q ss_pred EEEEeCCcEEE
Q 019672 301 SVITYNGYFVE 311 (337)
Q Consensus 301 ~~~~~dg~~~~ 311 (337)
.++++|.+++.
T Consensus 324 ls~~sdk~i~l 334 (338)
T KOG0265|consen 324 LSCSSDKTIYL 334 (338)
T ss_pred EEeccCceeEe
Confidence 99999998875
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.8e-29 Score=216.71 Aligned_cols=273 Identities=11% Similarity=0.144 Sum_probs=208.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
-+-+|..+.|.|+|+.|++|++.| |.+||..+.. .+...+...+..+.++++... ++++. .++.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~w--miSgD-----~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTW--MISGD-----KGGMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCE--EEEcC-----CCceEEeccc
Confidence 345799999999999999999987 7999976553 233333344555555555544 45542 5899999998
Q ss_pred CCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 83 TTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 83 ~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
..+-......++ ..|++++|+++. ++.++ |++|+|||....+....+..| .-.+-++.++|...++|++|. |
T Consensus 168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH--gwdVksvdWHP~kgLiasgsk--D 243 (464)
T KOG0284|consen 168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH--GWDVKSVDWHPTKGLIASGSK--D 243 (464)
T ss_pred chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC--CCCcceeccCCccceeEEccC--C
Confidence 765433333444 689999998754 44455 889999999887776677554 345667788888889999884 7
Q ss_pred cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
..|++||.+++.++ |+..|..+.|+|++++|+|+|.|.. ++++|+++.+.+.+++ + |+..|.+++|+|-..
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r-~-Hkkdv~~~~WhP~~~- 319 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYR-G-HKKDVTSLTWHPLNE- 319 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhh-c-chhhheeeccccccc-
Confidence 89999999999876 4589999999999999999999986 6999999888888875 3 356799999999877
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
++|.+|+.||.|..|.+...++ ++...+....++|+.+- +|-+.-|++|+.|.+++.|.
T Consensus 320 -~lftsgg~Dgsvvh~~v~~~~p----------~~~i~~AHd~~iwsl~~----------hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 320 -SLFTSGGSDGSVVHWVVGLEEP----------LGEIPPAHDGEIWSLAY----------HPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred -cceeeccCCCceEEEecccccc----------ccCCCcccccceeeeec----------cccceeEeecCCCcceeeec
Confidence 5999999999999999874443 22233344566787754 33446788899999999996
Q ss_pred E
Q 019672 314 F 314 (337)
Q Consensus 314 ~ 314 (337)
-
T Consensus 379 r 379 (464)
T KOG0284|consen 379 R 379 (464)
T ss_pred c
Confidence 5
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.1e-26 Score=232.88 Aligned_cols=283 Identities=15% Similarity=0.146 Sum_probs=195.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC----cE----EEEEe-eCCEEEEEEcc-CCCEEEEEeCCCCCCCC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG----RL----CYERA-VGAFSIVEMLY-SSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~----~~----~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 73 (337)
.+.+.|++++|+|+|++||+|+.++ ++||++... .. ..... ...+..+.+.. ..+.++.++ .
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~ 553 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------F 553 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------C
Confidence 4678899999999999999998877 699997542 11 11111 12233334332 234444333 4
Q ss_pred CceEEEEECCCCCEEEEEEc-CCceeEEEEcC-C--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee-CCCc
Q 019672 74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP-SLNA 147 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~-~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (337)
|++|++||+.+++.+..+.. ...|.++.|++ + .++.++ |+.|++||+++++.+..+..+ ..++++.+ .+++
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g 630 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESG 630 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCC
Confidence 99999999999988887754 45899999985 3 344444 889999999998888777643 24556665 3467
Q ss_pred cEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC------ceeEeecc
Q 019672 148 CFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA------TKSYSFRR 215 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~------~~~~~~~~ 215 (337)
.++++++ .||.|++||+++.+. .|...|.++.|. ++.+|++++.|++ |+|||+..+ +.+..+.
T Consensus 631 ~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~- 705 (793)
T PLN00181 631 RSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFM- 705 (793)
T ss_pred CEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEc-
Confidence 7888887 599999999987542 244789999997 7789999999998 699999753 4556664
Q ss_pred CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672 216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295 (337)
Q Consensus 216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 295 (337)
+ |...+.+++|+|+++ +||+|+.|++|+||+........ .+..... ...... ....+...+..+.+.+
T Consensus 706 g-h~~~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~~~~~~------s~~~~~~-~~~~~~-~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 706 G-HTNVKNFVGLSVSDG---YIATGSETNEVFVYHKAFPMPVL------SYKFKTI-DPVSGL-EVDDASQFISSVCWRG 773 (793)
T ss_pred C-CCCCeeEEEEcCCCC---EEEEEeCCCEEEEEECCCCCceE------EEecccC-Cccccc-ccCCCCcEEEEEEEcC
Confidence 2 355688999999999 99999999999999976543211 0000000 000000 0011112334444566
Q ss_pred ccCEEEEEEeCCcEEEEEE
Q 019672 296 KRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 296 ~~~~l~~~~~dg~~~~~~~ 314 (337)
++..|++++.||.+++|++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 6789999999999999986
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=197.21 Aligned_cols=224 Identities=12% Similarity=0.125 Sum_probs=178.8
Q ss_pred CeEEEEEcCCCCEEEEEcCCce-EEEeCCCC--c----EEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 9 PVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--R----LCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~--~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
=|..++|+|.|+++|+|+-|.. .||++.+. + ...+...|. +.++.+.. .+.++..+| |.+..+
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SG-------D~TCal 170 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSG-------DMTCAL 170 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCC-------CceEEE
Confidence 3788999999999999887665 99998755 2 222333333 33444443 333444443 999999
Q ss_pred EECCCCCEEEEEEcC-CceeEEEEcC-Ce--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 80 FNTTTGTALRELNFL-TSILAVRLNK-KR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 80 wd~~~~~~~~~~~~~-~~v~~i~~~~-~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
||+++++.+..+..+ ..|.++.+.| +. ++.+. |...++||++.+...++|..+.. .+.++.+.|++.-+++++
T Consensus 171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes--DINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES--DINSVRFFPSGDAFATGS 248 (343)
T ss_pred EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc--ccceEEEccCCCeeeecC
Confidence 999999999988755 4899999987 33 33333 89999999999999999976654 677788888888999887
Q ss_pred CCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 155 STTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
+|++.++||++..+.+.. .+|++++||..|++|.+|..|.+ +.+||.-.++.+..+. + |...|.||..
T Consensus 249 --DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~-G-HeNRvScl~~ 323 (343)
T KOG0286|consen 249 --DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLA-G-HENRVSCLGV 323 (343)
T ss_pred --CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEee-c-cCCeeEEEEE
Confidence 699999999998765422 78999999999999999999998 5899999999988875 3 4678999999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEe
Q 019672 228 GQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~ 250 (337)
+|||. -+++||.|.+++||.
T Consensus 324 s~DG~---av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGM---AVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCc---EEEecchhHheeecC
Confidence 99999 999999999999994
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=203.82 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=215.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
++|.+=|.|+++.|-.++|++|+.|+. +|||+.++++..+..++ .+.-+.+.....++..++ .|+.|+.|
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-------edk~VKCw 220 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-------EDKQVKCW 220 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-------CCCeeEEE
Confidence 467778999999999999999999885 99999999998887643 344455555556665544 49999999
Q ss_pred ECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
|++.++.|+.+-. -+.|.+++++|.. ++.++ |..++|||+++...++.+..|.++.. .+...|.+..+++++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~--~V~~~~~dpqvit~S-- 296 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA--SVMCQPTDPQVITGS-- 296 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcce--eEEeecCCCceEEec--
Confidence 9999999988754 4689999998754 44444 88999999999999999988877544 334444455778877
Q ss_pred CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672 157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg 231 (337)
.|++|++||+..++.. |+..|.+++.+|....+|++|.|. |+-|++..|..+..+. .+.+.|++|+...||
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nls--gh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLS--GHNAIINTLSVNSDG 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhccc--cccceeeeeeeccCc
Confidence 5999999999988764 348899999999999999999994 6999999999988864 246789999999998
Q ss_pred CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672 232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 311 (337)
Q Consensus 232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~ 311 (337)
++++|++.|.+.+||.+.+.+-.+. -..+.|.... +.++ ..+..+..-+.+|+++-.|.+|++
T Consensus 373 ----v~~~G~dng~~~fwdwksg~nyQ~~------~t~vqpGSl~---sEag----I~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 373 ----VLVSGGDNGSIMFWDWKSGHNYQRG------QTIVQPGSLE---SEAG----IFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred ----eEEEcCCceEEEEEecCcCcccccc------cccccCCccc---cccc----eeEEeecccCceEEeccCCcceEE
Confidence 7999999999999999877653321 0011121110 1010 011112334578999999999999
Q ss_pred EEEecCCCC
Q 019672 312 YIFSINNCC 320 (337)
Q Consensus 312 ~~~~~~~~~ 320 (337)
|.-|.+...
T Consensus 436 ~keDe~aT~ 444 (460)
T KOG0285|consen 436 YKEDEHATE 444 (460)
T ss_pred EecccccCc
Confidence 988766443
No 24
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.2e-28 Score=206.54 Aligned_cols=232 Identities=15% Similarity=0.180 Sum_probs=190.6
Q ss_pred CCCCCCCeEEEEEcC-----CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672 3 NQSSSYPVFFVSFNQ-----DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~-----dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (337)
+.+|+..|++++|.| ..++||+++.|+ ++|||+..+..++....|...+.++.+.+..+++.+. .|++
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS------~Drt 269 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS------QDRT 269 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC------CCce
Confidence 568899999999965 667899999887 6999999999998888887777788888887777665 6999
Q ss_pred EEEEECCCCCEEEEEEcCC-ceeEEEEc-------------CC-------------------------eEEEEE-CCeEE
Q 019672 77 LCLFNTTTGTALRELNFLT-SILAVRLN-------------KK-------------------------RLVIVL-REKTY 116 (337)
Q Consensus 77 v~iwd~~~~~~~~~~~~~~-~v~~i~~~-------------~~-------------------------~~~v~~-d~~i~ 116 (337)
|++|+...|++..++..+. -|..++++ .+ +++.+. |.+++
T Consensus 270 Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf 349 (480)
T KOG0271|consen 270 IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF 349 (480)
T ss_pred EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence 9999999999888876554 57777766 22 244455 66999
Q ss_pred EEECCC-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEE
Q 019672 117 IYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIA 190 (337)
Q Consensus 117 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~la 190 (337)
+|+-.. .+++..+..|.. -+..++++||+.++|+++. |..|++||.++++.+ |-.+|..++|+.|.++|+
T Consensus 350 lW~p~~~kkpi~rmtgHq~--lVn~V~fSPd~r~IASaSF--DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 350 LWNPFKSKKPITRMTGHQA--LVNHVSFSPDGRYIASASF--DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred Eecccccccchhhhhchhh--heeeEEECCCccEEEEeec--ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE
Confidence 998743 345556555443 4667777889999999984 999999999999875 448999999999999999
Q ss_pred EEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 191 TASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 191 t~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
+||.|.+ +++||+++.+....+. | |..+|+++.|+|||+ .+++|+.|..+++|.
T Consensus 426 S~SkDsT-LKvw~V~tkKl~~DLp-G-h~DEVf~vDwspDG~---rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 426 SGSKDST-LKVWDVRTKKLKQDLP-G-HADEVFAVDWSPDGQ---RVASGGKDKVLRLWR 479 (480)
T ss_pred EcCCCce-EEEEEeeeeeecccCC-C-CCceEEEEEecCCCc---eeecCCCceEEEeec
Confidence 9999988 6999999998887774 3 466899999999999 999999999999994
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=203.02 Aligned_cols=274 Identities=14% Similarity=0.140 Sum_probs=209.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
.++..+|+.+-|+|+--..++++++. +++||..++++.....++.-.+..+.++.....+++. +.|-.+++||.
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tc-----SsDl~~~LWd~ 179 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATC-----SSDLSAKLWDF 179 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEec-----CCccchhheeH
Confidence 35678899999999999888888876 6999999999876665555455566666555545554 25777999999
Q ss_pred CC-CCEEEEE-EcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 83 TT-GTALREL-NFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 83 ~~-~~~~~~~-~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
.+ .+++... .+...|.++.+-| ++++.++ |++|+.|++.++..+.++..+.+ -+-.+.++.|+.++|+++ .
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s--~ 255 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCS--N 255 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecC--C
Confidence 76 3444433 3445677787754 5555555 89999999999999999976644 566778888999999988 5
Q ss_pred ccEEEEEEccCCcc-----cccCceEEEEeCCC---------------CCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672 158 KGSVLVYNVMELHS-----HCEAPLAAIVLSSN---------------GMYIATASEQGTIIRVFLVSEATKSYSFRRGT 217 (337)
Q Consensus 158 dg~v~i~d~~~~~~-----~~~~~i~~~~~s~d---------------g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~ 217 (337)
|.+|++|-+.+... .|+.+|.|++|-|. |.+++++|.|++ ||+||+.+|.++.++. +
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~-g- 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLV-G- 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEe-c-
Confidence 99999999988743 25699999999653 358999999997 7999999999999884 3
Q ss_pred cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCccc
Q 019672 218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR 297 (337)
Q Consensus 218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 297 (337)
|..-|..++|+|.|+ ||+++.+|++++|||++.....+..+.. + .+++.+.+....
T Consensus 333 hdnwVr~~af~p~Gk---yi~ScaDDktlrvwdl~~~~cmk~~~ah---------~------------hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGK---YILSCADDKTLRVWDLKNLQCMKTLEAH---------E------------HFVTSLDFHKTA 388 (406)
T ss_pred ccceeeeeEEcCCCe---EEEEEecCCcEEEEEeccceeeeccCCC---------c------------ceeEEEecCCCC
Confidence 456799999999999 9999999999999999876654421111 1 122333334444
Q ss_pred CEEEEEEeCCcEEEEE
Q 019672 298 ASVSVITYNGYFVEYI 313 (337)
Q Consensus 298 ~~l~~~~~dg~~~~~~ 313 (337)
.++++|+-|-++++|.
T Consensus 389 p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceEEeccccceeeeee
Confidence 6899999999999985
No 26
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-25 Score=189.03 Aligned_cols=238 Identities=12% Similarity=0.161 Sum_probs=186.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
-..+|+++.|+++|.++++++++ .+++||..+++++..... .++..+++.+.++.++..+.. .|.+||..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC-----CCCceEEEEe
Confidence 35789999999999999987765 679999999988766543 577788898888888777663 5899999999
Q ss_pred CCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 83 TTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 83 ~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
.+++.++-+..+. .|..+..+|.. ++.++ |++|++||++..+.+..+..... .++| ++|.|.++|.+.. .
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~A--fDp~GLifA~~~~--~ 161 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAA--FDPEGLIFALANG--S 161 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--ccee--ECCCCcEEEEecC--C
Confidence 9999999987665 79999998743 33333 99999999998777666654332 3444 4567778887763 4
Q ss_pred cEEEEEEccCCccc-------c---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-EEEEEe
Q 019672 159 GSVLVYNVMELHSH-------C---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-IFSLSF 227 (337)
Q Consensus 159 g~v~i~d~~~~~~~-------~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~f 227 (337)
+.|++||+++.... . ....+.+.|||||++|..+...+. +++.|.-+|..+.++........ -.+.+|
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 48999999876322 1 267899999999999999888875 78999999999888854332221 246789
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 228 GQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
+||++ ++.+|+.||+|++|+++++....
T Consensus 241 tPds~---Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 241 TPDSK---FVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred CCCCc---EEEEecCCCcEEEEEcCCCcEee
Confidence 99999 99999999999999998876643
No 27
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-26 Score=190.84 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=215.0
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.++|.-||+.+.+|.+|.+|.++++|.. .||-..+|+.+-+..+ +.+-++++.+++..++..+ +|++++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-------AD~t~kL 78 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-------ADQTAKL 78 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-------ccceeEE
Confidence 5789999999999999999999998876 9999888988765544 5566777777777765543 5999999
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEEC------CeEEEEECCC-------CeeeeeecCCCCCceEEEEeeC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR------EKTYIYDANT-------LAILDTIDTVPNLKGLCAFSPS 144 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d------~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~ 144 (337)
||+++|+++.+++.+.+|..+.|+.++ .++++| +.|.++|++. .++...+.++.. .+...-+.
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s--kit~a~Wg 156 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS--KITSALWG 156 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--ceeeeeec
Confidence 999999999999999999999887644 444443 4799999983 344666666553 34444455
Q ss_pred CCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc
Q 019672 145 LNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY 218 (337)
Q Consensus 145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~ 218 (337)
|-+..|+++. ++|.|.+||++++... |...|+.+.++||..+++|+|.|.+. ++||+.+-+.++++..
T Consensus 157 ~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta-kl~D~~tl~v~Kty~t--- 230 (327)
T KOG0643|consen 157 PLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA-KLVDVRTLEVLKTYTT--- 230 (327)
T ss_pred ccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc-eeeeccceeeEEEeee---
Confidence 6677888877 6999999999997543 45899999999999999999999884 9999999999998853
Q ss_pred ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccc-eeecccccceeeeeccCCCccc
Q 019672 219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV-NEVLDPADHHVLRNAFPAGVKR 297 (337)
Q Consensus 219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~ 297 (337)
..+|++.+++|... +++.|+....- |+.+-... ..+|-..+.-..+ .++-...+|+-..|.++++|++
T Consensus 231 e~PvN~aaisP~~d---~VilgGGqeA~---dVTTT~~r-----~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 231 ERPVNTAAISPLLD---HVILGGGQEAM---DVTTTSTR-----AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cccccceecccccc---eEEecCCceee---eeeeeccc-----ccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 45799999999877 56655543222 22221111 1111111211111 1223334455567888999999
Q ss_pred CEEEEEEeCCcEEEEEEecC
Q 019672 298 ASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 298 ~~l~~~~~dg~~~~~~~~~~ 317 (337)
+...+|++||.|++.-++.+
T Consensus 300 ksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccccCCCCceEEEEEeccc
Confidence 99999999999999988754
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=2e-25 Score=198.41 Aligned_cols=285 Identities=15% Similarity=0.191 Sum_probs=182.1
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCC---EEEEEEccCCCEEEEEeCC-----------
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGA---FSIVEMLYSSSLLAIVGAG----------- 67 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g----------- 67 (337)
+.+|++.|+.++|+||++.|++.+.| ..+|||+.+.+++.++..+. -..+.+.+..+.++.++.+
T Consensus 231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 34899999999999999998887765 57999999998776653321 1123334444444444431
Q ss_pred --------------------CC----CCCCCceEEEEECCCCCEEEE--EEcCCceeEEEEcC-CeEEEEE-CCeEEEEE
Q 019672 68 --------------------EQ----PSLSPRRLCLFNTTTGTALRE--LNFLTSILAVRLNK-KRLVIVL-REKTYIYD 119 (337)
Q Consensus 68 --------------------~~----~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~-d~~i~i~d 119 (337)
.. .++.|+.|.-||..++..-.. -.|...|.+++.+. +.++.++ |+++++.+
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVIS 390 (603)
T ss_pred ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence 00 023445555555544433222 12233455554443 3333333 55555554
Q ss_pred CCCCeeeee--ecCCCCCce-----------------------------------EEEEeeCCCccEEEEcCCCCccEEE
Q 019672 120 ANTLAILDT--IDTVPNLKG-----------------------------------LCAFSPSLNACFLAVPASTTKGSVL 162 (337)
Q Consensus 120 ~~~~~~~~~--~~~~~~~~~-----------------------------------~~~~~~~~~~~~la~~~~~~dg~v~ 162 (337)
+.....-.. ++...+|.+ ..+++.+|++..+|.+| +||.|+
T Consensus 391 ~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG--~Dgkvh 468 (603)
T KOG0318|consen 391 LKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG--QDGKVH 468 (603)
T ss_pred cccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec--ccceEE
Confidence 421100000 000001100 23456678888999988 699999
Q ss_pred EEEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672 163 VYNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235 (337)
Q Consensus 163 i~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~ 235 (337)
||.+..... .|.++|++++|||||.+||++...+.+ -+||+.+.+. +.-+-..|.+.|.||+|||+.+
T Consensus 469 vysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv-v~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~--- 543 (603)
T KOG0318|consen 469 VYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV-VLYDVASREV-KTNRWAFHTAKINCVAWSPNNK--- 543 (603)
T ss_pred EEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE-EEEEcccCce-ecceeeeeeeeEEEEEeCCCce---
Confidence 999876442 245999999999999999999999886 5999999876 4334456788999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
++|+||-|-.|.||+++++.+... ..+..+.....-.| .+..+|++.+.|-.+++|++.
T Consensus 544 ~vATGSlDt~Viiysv~kP~~~i~------iknAH~~gVn~v~w---------------lde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKPAKHII------IKNAHLGGVNSVAW---------------LDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeccccceEEEEEccChhhheE------eccccccCceeEEE---------------ecCceEEeccCcceeEEeccc
Confidence 999999999999999988765321 11111111111122 234789999999999999874
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=204.10 Aligned_cols=235 Identities=13% Similarity=0.166 Sum_probs=188.0
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCc--EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.++|+++|+++.|+++|.++++|..+|. ++|+..-.. .....+...+..+++.+..+..+.++ .|++|+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S-------dDg~iki 206 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS-------DDGTIKI 206 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec-------CCCeEEE
Confidence 4689999999999999999999999885 999864332 22222224455555554444444444 5999999
Q ss_pred EECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
||....++...+..++ .|.++.|+|..-.+++ |+.|++||.+++..+.++..+.+ .++++.+++++.+|++++
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt~s- 283 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLTGS- 283 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEEcc-
Confidence 9999888877776665 8999999997655554 77999999999999988876655 688888999999999998
Q ss_pred CCccEEEEEEccCCccc-----ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672 156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~ 229 (337)
.|..++++|+++.+.+ |+..|++++|+| ...+|++|+.||.+ ..|.+...+.+..+..+ |...|++|+|+|
T Consensus 284 -kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP 360 (464)
T KOG0284|consen 284 -KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV-VHWVVGLEEPLGEIPPA-HDGEIWSLAYHP 360 (464)
T ss_pred -CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce-EEEeccccccccCCCcc-cccceeeeeccc
Confidence 5999999999977654 558899999999 55689999999985 68999866666666544 466799999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCC
Q 019672 230 SMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 230 dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
-|. +||+|+.|.++++|.-..
T Consensus 361 lGh---il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 361 LGH---ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cce---eEeecCCCcceeeeccCC
Confidence 999 999999999999997543
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=3.6e-27 Score=207.63 Aligned_cols=278 Identities=13% Similarity=0.121 Sum_probs=208.5
Q ss_pred CCCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCC-CcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST-GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.++|...|+++.|.| .+.+|++|+.|+ ++|||+-. ++++.+..+|.-.+-++.|+....-+.+++ -|+.|++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s-----fD~~lKl 284 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS-----FDRFLKL 284 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee-----cceeeee
Confidence 568899999999999 788888888887 59999766 677777766655555555665554445543 6999999
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
||+++|+++..+.....+.+++++|+. +++++ |++|+.||+++++.++++..+- ..+..+.+-+++..+++++
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL--g~i~~i~F~~~g~rFissS- 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL--GAILDITFVDEGRRFISSS- 361 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh--hheeeeEEccCCceEeeec-
Confidence 999999999999988899999998754 44443 8999999999999998886543 4577888888888988887
Q ss_pred CCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee---EeeccCCcceeEEEEE
Q 019672 156 TTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS---YSFRRGTYPSTIFSLS 226 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~l~ 226 (337)
+|+.++||+....-... .....||..+|++++++.=|.|.. |.++.+...-++ +.|+.+.-.+--..|.
T Consensus 362 -Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 -DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred -cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCceeeEE
Confidence 69999999987654332 277889999999999999999976 678887543222 2333221112245689
Q ss_pred eecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC
Q 019672 227 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN 306 (337)
Q Consensus 227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d 306 (337)
|||||. +|++|+.||.+.+||.++-+...+.. ..-...+.-.|.+.. ...+++++-|
T Consensus 440 fSpDG~---~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~v~wHP~e-------------~Skvat~~w~ 496 (503)
T KOG0282|consen 440 FSPDGR---TLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIGVDWHPVE-------------PSKVATCGWD 496 (503)
T ss_pred EcCCCC---eEEeecCCccEEEeechhhhhhhccc-------cCCcceEEEEecCCC-------------cceeEecccC
Confidence 999999 99999999999999988765543211 110111233566643 2678888999
Q ss_pred CcEEEEE
Q 019672 307 GYFVEYI 313 (337)
Q Consensus 307 g~~~~~~ 313 (337)
|.|++|.
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999994
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=202.03 Aligned_cols=273 Identities=14% Similarity=0.183 Sum_probs=198.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
....|+|+++.. ..+++|..| .++|||..+...++...+|.-.++++.|+... +++| ++|.+|++||+++
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rv--iisG-----SSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERV--IVSG-----SSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceE--EEec-----CCCceEEEEeccC
Confidence 456799999754 457788765 57999998887766666655566677777663 3444 3799999999999
Q ss_pred CCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeee---eeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 85 GTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 85 ~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
|+++.++-++ ..|..+.|+.+.++.++ |.++.+||+.....+ +.+..|- ..+..+.++ ..++++++ .|.
T Consensus 267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr--AaVNvVdfd--~kyIVsAS--gDR 340 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--AAVNVVDFD--DKYIVSAS--GDR 340 (499)
T ss_pred CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhh--hheeeeccc--cceEEEec--CCc
Confidence 9999887655 58999999999988888 889999999765322 2233332 234444443 34888887 499
Q ss_pred EEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672 160 SVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 234 (337)
Q Consensus 160 ~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~ 234 (337)
+|++|++.+...+ |+..|.|+.+ .|+++++||+|.+ ||+||+..|.++..+. | |..-|.|+.|. .+
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLe-G-HEeLvRciRFd--~k-- 411 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLE-G-HEELVRCIRFD--NK-- 411 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHh-c-hHHhhhheeec--Cc--
Confidence 9999999998765 3467888776 6789999999987 7999999999988774 4 35569999996 44
Q ss_pred cEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672 235 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 235 ~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~ 314 (337)
.+++|+.||+|+|||+..+..++.+.. .-++. .+......++...+ +.-+|++.+.|.++.+|++
T Consensus 412 -rIVSGaYDGkikvWdl~aaldpra~~~-~~Cl~-~lv~hsgRVFrLQF------------D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 412 -RIVSGAYDGKIKVWDLQAALDPRAPAS-TLCLR-TLVEHSGRVFRLQF------------DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred -eeeeccccceEEEEecccccCCccccc-chHHH-hhhhccceeEEEee------------cceEEEeccCCCeEEEEEc
Confidence 799999999999999998877653110 01110 11111112222211 3368999999999999999
Q ss_pred ecC
Q 019672 315 SIN 317 (337)
Q Consensus 315 ~~~ 317 (337)
...
T Consensus 477 l~~ 479 (499)
T KOG0281|consen 477 LNG 479 (499)
T ss_pred CCC
Confidence 654
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=194.42 Aligned_cols=233 Identities=16% Similarity=0.180 Sum_probs=192.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC-cEEE--EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.+|.+.|..++|+..|++|++++.|- +++||.++. +.+. ..+.+.+..+.+.+.++.++.++ .|++|+.
T Consensus 147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s-------rD~tik~ 219 (406)
T KOG0295|consen 147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS-------RDNTIKA 219 (406)
T ss_pred hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-------cccceeE
Confidence 46788899999999999999999887 799998874 3222 23446777788888887776554 5999999
Q ss_pred EECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-----------
Q 019672 80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS----------- 144 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----------- 144 (337)
|++.+|-++.++..+. =|.-+..+.++.++++ |.++++|-+.+++....++.+.++....++++.
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 9999999999987766 4788899999988887 779999999999777777777777666666541
Q ss_pred -C-CccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672 145 -L-NACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT 217 (337)
Q Consensus 145 -~-~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~ 217 (337)
. .++++++++ .|++|++||+.++..+. .+.|..++|+|.|+||+++.+|++ +|+||++++++++++. .
T Consensus 300 ~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~--a 374 (406)
T KOG0295|consen 300 STNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLE--A 374 (406)
T ss_pred CCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccC--C
Confidence 1 124666655 69999999999998764 488999999999999999999998 6999999999999886 3
Q ss_pred cceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672 218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 251 (337)
Q Consensus 218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l 251 (337)
++.-++++.|..+.. ++++|+-|.++++|.-
T Consensus 375 h~hfvt~lDfh~~~p---~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAP---YVVTGSVDQTVKVWEC 405 (406)
T ss_pred CcceeEEEecCCCCc---eEEeccccceeeeeec
Confidence 466799999999988 9999999999999963
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.6e-25 Score=196.72 Aligned_cols=232 Identities=15% Similarity=0.211 Sum_probs=185.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
.-|++||.+++|+.+|++|++++.++. .+||..++........+...-+++.+.++.-...++ .|+.|+++.+
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~------td~~i~V~kv 346 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSS------TDGCIHVCKV 346 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecC------CCceEEEEEe
Confidence 468999999999999999999998875 999998887665555444443334444433333333 5899999999
Q ss_pred CCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC---------ccE
Q 019672 83 TTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN---------ACF 149 (337)
Q Consensus 83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 149 (337)
...+++.++.++ .+|.++.|++...++++ |++++||........+.++.|.. .++.+.++|. +..
T Consensus 347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~ 424 (524)
T KOG0273|consen 347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--EIYTIKWSPTGPVTSNPNMNLM 424 (524)
T ss_pred cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc--ceeeEeecCCCCccCCCcCCce
Confidence 988999887654 58999999987766655 78999999988877777766543 4555555443 346
Q ss_pred EEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672 150 LAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 224 (337)
Q Consensus 150 la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 224 (337)
+++++ .|++|++||+..+.+.| +.||.+++|+|+|+++|+|+.||. +.||++++++..+.+.. ...|..
T Consensus 425 l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~~---~~~Ife 498 (524)
T KOG0273|consen 425 LASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKTGKLVKSYQG---TGGIFE 498 (524)
T ss_pred EEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEeccccchheeEeecC---CCeEEE
Confidence 77777 49999999999988764 499999999999999999999997 68999999999888753 345999
Q ss_pred EEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 225 LSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 225 l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
|+|+.+|. +|.++-.||.+.+-|+.
T Consensus 499 l~Wn~~G~---kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 499 LCWNAAGD---KLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEcCCCC---EEEEEecCCCceEEEec
Confidence 99999998 99999999999999875
No 34
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.2e-25 Score=182.68 Aligned_cols=235 Identities=15% Similarity=0.172 Sum_probs=177.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eC--CEEEEEEcc-CCCEEEEEeCCCCCCCCCceE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VG--AFSIVEMLY-SSSLLAIVGAGEQPSLSPRRL 77 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~--~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v 77 (337)
+++..+|-+++|+.+|+.|+.|+.++ +.||+++..+++.... .+ .+..+++.+ +++.++.+++ |++|
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~-------dk~i 89 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG-------DKTI 89 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC-------CceE
Confidence 46778999999999999999998877 5999999886554432 12 233334433 4466666665 8999
Q ss_pred EEEECCCCCEEEEEEcCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 78 CLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
++||.++++++..+.....-..+.++|++-.++ . |+.|.+.|.++.+.....+..... .-+++. +++..++++.|
T Consensus 90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~-ne~~w~-~~nd~Fflt~G 167 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV-NEISWN-NSNDLFFLTNG 167 (313)
T ss_pred EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee-eeeeec-CCCCEEEEecC
Confidence 999999999999988776555677877654433 3 789999999988777665433221 223444 34444555655
Q ss_pred CCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672 155 STTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~ 229 (337)
.|.|.|......+.+ |.....||.|+|+|++||+||.|.. +-+||+...-++..+.+. .-+|..|+||.
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRl--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRL--DWPVRTLSFSH 241 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccc--cCceEEEEecc
Confidence 699999988777655 3367788999999999999999985 689999988777777653 45799999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 230 SMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 230 dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
||+ +||+||.|-.|-|=+++++..
T Consensus 242 dg~---~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 242 DGR---MLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred Ccc---eeeccCccceEEeEecccCCe
Confidence 999 999999999998888877654
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-25 Score=202.72 Aligned_cols=270 Identities=14% Similarity=0.161 Sum_probs=206.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCE--EEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
..+...|-++.|+|....++++--+| +.|||.++..++...+..++ ....+....+.++..+ .|..||++
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVf 82 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGS-------DDMQIRVF 82 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEec-------CCceEEEE
Confidence 34778899999999999988888776 79999999888776665444 3444555666665443 59999999
Q ss_pred ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE--C-CeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCC-ccEEEEcC
Q 019672 81 NTTTGTALRELNFLT-SILAVRLNKKRLVIVL--R-EKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLN-ACFLAVPA 154 (337)
Q Consensus 81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~--d-~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~ 154 (337)
+..+++.+..++.+. -|++|+.+|....+.+ | -.|++||-..+ .+.++++.|.+ .++.++++|. ...+|+++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCCccceeeee
Confidence 999999999987655 7999999998766554 4 48999999876 44566776655 6666666663 45667666
Q ss_pred CCCccEEEEEEccCCccc-----ccCceEEEEeCCCC--CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 155 STTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg--~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
-|++|+||.+.+.... |+..|+|+.|-+-| .+|+||++|.+ |+|||.++.++++++.. |...|..+.|
T Consensus 161 --LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~f 235 (794)
T KOG0276|consen 161 --LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFF 235 (794)
T ss_pred --ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEe
Confidence 5999999999876543 55899999997744 69999999986 79999999999999853 3456999999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672 228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG 307 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg 307 (337)
+|.=. ++++||.|||++||.-.+-+... .+.-....+|..+. +..++.+++|..+|
T Consensus 236 hp~lp---iiisgsEDGTvriWhs~Ty~lE~-----------tLn~gleRvW~I~~----------~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 236 HPELP---IIISGSEDGTVRIWNSKTYKLEK-----------TLNYGLERVWCIAA----------HKGDGKIAVGFDEG 291 (794)
T ss_pred cCCCc---EEEEecCCccEEEecCcceehhh-----------hhhcCCceEEEEee----------cCCCCeEEEeccCC
Confidence 99998 99999999999999976654322 22223345777653 34456778888888
Q ss_pred cEEE
Q 019672 308 YFVE 311 (337)
Q Consensus 308 ~~~~ 311 (337)
.+.+
T Consensus 292 ~i~v 295 (794)
T KOG0276|consen 292 SVTV 295 (794)
T ss_pred cEEE
Confidence 7654
No 36
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=212.70 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=180.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCc------------------------------EE------------
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR------------------------------LC------------ 41 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~------------------------------~~------------ 41 (337)
+|++.|+++.|++||+|||+|++|++ +||.+..-+ .+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 78999999999999999999999996 999764400 00
Q ss_pred ------------------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEc
Q 019672 42 ------------------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN 103 (337)
Q Consensus 42 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~ 103 (337)
....+|...++++.|+.+.++|.+. .|++||||++...++++.+.|+.-|++|+|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSS------MDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSS------MDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEecc------ccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 0001122346677788777777665 7999999999999999999999999999998
Q ss_pred C--CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----
Q 019672 104 K--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----- 174 (337)
Q Consensus 104 ~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----- 174 (337)
| +..++.+ |++++||++...+.+.-.+.+ .-+.+++..|+|++.+.+.. +|.+++|+....+....
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt~--~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGTF--NGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEEe--ccEEEEEEccCCeEEEeeeEee
Confidence 7 3344433 999999999988777665543 34677788888888887774 89999999876654311
Q ss_pred --------CceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672 175 --------APLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 245 (337)
Q Consensus 175 --------~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~ 245 (337)
..|+.+.|.|... .+...++|.. |||+|.++.+++..|+.......-....|+.||+ +|+++++|..
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk---~IVs~seDs~ 569 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK---HIVSASEDSW 569 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCC---EEEEeecCce
Confidence 4699999987433 4666678877 7999999888888886333223345679999999 9999999999
Q ss_pred EEEEecCCC
Q 019672 246 LHVFSPGFA 254 (337)
Q Consensus 246 v~iw~l~~~ 254 (337)
|+||+++..
T Consensus 570 VYiW~~~~~ 578 (712)
T KOG0283|consen 570 VYIWKNDSF 578 (712)
T ss_pred EEEEeCCCC
Confidence 999998543
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=8.8e-26 Score=209.46 Aligned_cols=236 Identities=11% Similarity=0.109 Sum_probs=180.6
Q ss_pred CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC--------------------------------EEEEEEcC
Q 019672 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--------------------------------ALRELNFL 94 (337)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~--------------------------------~~~~~~~~ 94 (337)
.++.++++..++..+|. | +.|..|++|.+...+ ...-+.|.
T Consensus 379 ~~v~ca~fSddssmlA~--G-----f~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLAC--G-----FVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred CcceeEeecCCcchhhc--c-----ccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 45666677666664433 3 568999999877311 01123456
Q ss_pred CceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672 95 TSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS 171 (337)
Q Consensus 95 ~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~ 171 (337)
++|....|+|+.-++. + |.++++|.+.+...+..+.+|..| +..+.++|.+.++|+++ .|++.++|.......
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P~GyYFatas--~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAPRGYYFATAS--HDQTARLWSTDHNKP 527 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecCCceEEEecC--CCceeeeeecccCCc
Confidence 7999999998754443 3 789999999999888888876665 44555668899999997 599999998876554
Q ss_pred c-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672 172 H-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL 246 (337)
Q Consensus 172 ~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v 246 (337)
. |.+.|.|+.|+|+..++||||.|.+ +|+||+.+|..+..|. | |.++|.+|+|||+|+ +||+|+.||.|
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~-G-H~~~V~al~~Sp~Gr---~LaSg~ed~~I 601 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFT-G-HKGPVTALAFSPCGR---YLASGDEDGLI 601 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEec-C-CCCceEEEEEcCCCc---eEeecccCCcE
Confidence 3 4489999999999999999999988 6999999999998885 4 578899999999999 99999999999
Q ss_pred EEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 247 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 247 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
+|||+..+..... +..+ ...+..+.++.+++-|++++.|.+|+.|++....+.
T Consensus 602 ~iWDl~~~~~v~~----------l~~H-----------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 602 KIWDLANGSLVKQ----------LKGH-----------TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEEEcCCCcchhh----------hhcc-----------cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999988765332 1111 111233445677899999999999999998655443
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5e-25 Score=199.47 Aligned_cols=235 Identities=12% Similarity=0.102 Sum_probs=185.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEE--EccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVE--MLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
-.+.||+++.|=+..+++++|++|. ++|||..+++.+...+.|+-.+-+ ..+...+++..+ .|-+|++||
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~ 125 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWD 125 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC-------CccEEEEee
Confidence 4567999999999999999999998 599999999998887766655444 433334444333 599999999
Q ss_pred CCCCC-EEEEEEcCC-ceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 82 TTTGT-ALRELNFLT-SILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 82 ~~~~~-~~~~~~~~~-~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
.+.+- +..+++.++ -|.+++|+|+ .++.+. |++|+||.+....+..+++.|......+.+-+-+|.++|++++
T Consensus 126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga- 204 (794)
T KOG0276|consen 126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA- 204 (794)
T ss_pred ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-
Confidence 98763 444555444 7999999874 344444 9999999999988888888766544445556677888999987
Q ss_pred CCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672 156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 230 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d 230 (337)
.|.+|+|||.++..++ |+..|+++.|+|.-..++|||+||+ +|||+..+-++..++..+. ..|+|++-.+.
T Consensus 205 -DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~ 280 (794)
T KOG0276|consen 205 -DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNYGL--ERVWCIAAHKG 280 (794)
T ss_pred -CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhcCC--ceEEEEeecCC
Confidence 6999999999998876 4488999999999999999999999 5999999988877776543 46999999988
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCc
Q 019672 231 MQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 231 g~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+. .++.|.+.|.|.| .+..+.
T Consensus 281 ~~---~i~vG~Deg~i~v-~lgree 301 (794)
T KOG0276|consen 281 DG---KIAVGFDEGSVTV-KLGREE 301 (794)
T ss_pred CC---eEEEeccCCcEEE-EccCCC
Confidence 88 8999999887744 454433
No 39
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=199.70 Aligned_cols=233 Identities=13% Similarity=0.163 Sum_probs=190.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
.++.++|+++.|.+++.++++++.++ +++||++..+++.+..+|.-.+++..+.-.....+++ +.|++|++||+
T Consensus 216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg-----s~DRtiK~WDl 290 (459)
T KOG0288|consen 216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG-----SADRTIKLWDL 290 (459)
T ss_pred hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeec-----cccchhhhhhh
Confidence 45678899999999999977777766 6999999999888877766666665555444445666 37999999999
Q ss_pred CCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672 83 TTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
....+..++-..+.+.+|..+...++... |++|++||++.......+..+. .+.++..+.++..+.+++ .|.++
T Consensus 291 ~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsss--RDdtl 365 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSS--RDDTL 365 (459)
T ss_pred hhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeec--CCCce
Confidence 99999998888888888887733222222 8899999999998888876543 577778778888888877 48899
Q ss_pred EEEEccCCccccc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 162 LVYNVMELHSHCE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 162 ~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
.++|+++....+. ...+.+.|||++.|+|+||.||. ++||++.++++.+.+......+.|++++|+|.|.
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 9999998776543 66899999999999999999998 5899999999988887655455799999999999
Q ss_pred cccEEEEEeCCCcEEEEe
Q 019672 233 FQDILVATSSSGSLHVFS 250 (337)
Q Consensus 233 ~~~~las~s~dg~v~iw~ 250 (337)
.|++++.++.+.+|.
T Consensus 445 ---~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 445 ---GLLSADKQKAVTLWT 459 (459)
T ss_pred ---hhhcccCCcceEecC
Confidence 999999999999993
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.5e-25 Score=203.88 Aligned_cols=276 Identities=13% Similarity=0.133 Sum_probs=202.7
Q ss_pred CCCCeEEEEE-cCCCCEEEEEcCCc-eEEEeCCCCcE-EEEEeeCCEEEEEEc-cCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 6 SSYPVFFVSF-NQDNSGFALSTKDG-FKIFDSSTGRL-CYERAVGAFSIVEML-YSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 6 ~~~~v~~~~f-s~dg~~la~g~~~g-~~vw~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
-.++|+.+.| .|+.++||++++.+ +|+|++.+... ++.. |.-.+..+. ++++. .++++ +.|+++++|-
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G--H~e~vlSL~~~~~g~-llat~-----sKD~svilWr 393 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG--HTEAVLSLDVWSSGD-LLATG-----SKDKSVILWR 393 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC--chhheeeeeecccCc-EEEEe-----cCCceEEEEE
Confidence 4567888887 58889999999876 79998876533 3333 333344433 44442 23333 2699999997
Q ss_pred CCCCC----EEEEE-EcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeee---eee----cCCCCCceEEEEeeCC
Q 019672 82 TTTGT----ALREL-NFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAIL---DTI----DTVPNLKGLCAFSPSL 145 (337)
Q Consensus 82 ~~~~~----~~~~~-~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~ 145 (337)
+..+. ++... .|...|.+++++.. .++.++ |.++++|+++..+.. ..+ ....+...+.+++.+|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 74433 22233 34557888888643 334343 889999999762111 111 1223445667777778
Q ss_pred CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672 146 NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
+..++|+++ .|.+.+||++...... |+..|.|+.|+|..+.+||+|.|++ ||||.+.+..++++|. | |.+
T Consensus 474 ndkLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~e-G-H~~ 548 (775)
T KOG0319|consen 474 NDKLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFE-G-HTS 548 (775)
T ss_pred CCceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeec-C-ccc
Confidence 888999998 6999999999976654 5588999999999999999999998 6999999999999995 4 467
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 300 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l 300 (337)
.|..+.|-.+|+ .|++++.||-|+||++++..-.. .+..+...+|.... ++..+.+
T Consensus 549 aVlra~F~~~~~---qliS~~adGliKlWnikt~eC~~-----------tlD~H~DrvWaL~~----------~~~~~~~ 604 (775)
T KOG0319|consen 549 AVLRASFIRNGK---QLISAGADGLIKLWNIKTNECEM-----------TLDAHNDRVWALSV----------SPLLDMF 604 (775)
T ss_pred eeEeeeeeeCCc---EEEeccCCCcEEEEeccchhhhh-----------hhhhccceeEEEee----------cCcccee
Confidence 899999999999 99999999999999998876533 34455567888765 5566789
Q ss_pred EEEEeCCcEEEEEEecCC
Q 019672 301 SVITYNGYFVEYIFSINN 318 (337)
Q Consensus 301 ~~~~~dg~~~~~~~~~~~ 318 (337)
++|+.||.+..|.=.++.
T Consensus 605 ~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 605 VTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred EecCCCeEEEEeecCcHH
Confidence 999999999999765553
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=5.3e-24 Score=185.86 Aligned_cols=229 Identities=17% Similarity=0.250 Sum_probs=178.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.+..++..+.|+|+++++++++.++ +++|++.+++.+.....+. +..+.+..+...++ +++ .++.|++||
T Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~------~~~~i~~~~ 121 (289)
T cd00200 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS-SSS------RDKTIKVWD 121 (289)
T ss_pred cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEE-Eec------CCCeEEEEE
Confidence 5667889999999999999888766 6999999876655554333 44444444433333 332 489999999
Q ss_pred CCCCCEEEEEE-cCCceeEEEEcCC-eEE-EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 82 TTTGTALRELN-FLTSILAVRLNKK-RLV-IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 82 ~~~~~~~~~~~-~~~~v~~i~~~~~-~~~-v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
+.+++.+..+. +...+.++.++++ .++ ++. ++.+++||+++++.+..+..+. ..+.++.+++++..+++++ .
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--~ 197 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGEKLLSSS--S 197 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc--cccceEEECCCcCEEEEec--C
Confidence 99888887776 4457999999884 333 334 8899999999888777776443 3466777778887888877 4
Q ss_pred ccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 158 KGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
+|.|.+||+.+.+... ..++.+++|+|++.++++++.||. |++||+.+++.+..+. .+...|.+++|+|+++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGK 274 (289)
T ss_pred CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEcc--ccCCcEEEEEECCCCC
Confidence 8999999998765432 368999999999999999888998 6999999988888775 3356799999999998
Q ss_pred cccEEEEEeCCCcEEEEe
Q 019672 233 FQDILVATSSSGSLHVFS 250 (337)
Q Consensus 233 ~~~~las~s~dg~v~iw~ 250 (337)
+|++++.||.|++|+
T Consensus 275 ---~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 ---RLASGSADGTIRIWD 289 (289)
T ss_pred ---EEEEecCCCeEEecC
Confidence 999999999999996
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=181.78 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=184.6
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEEc-CCceEEEeCCCCcEEEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEEE
Q 019672 2 SNQSSSYPVFFVSFNQDNSGFALST-KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 2 ~~~~~~~~v~~~~fs~dg~~la~g~-~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~i 79 (337)
....|++.|..+.|++|++.+++++ ++.++.||.++|+.++....+.-.+-.+.+.. +...+.++ +.|++++|
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg-----sdD~t~kl 159 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG-----SDDGTLKL 159 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec-----CCCceEEE
Confidence 3567899999999999999977555 55689999999999888765443333333332 33334444 47999999
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
||.++...+.+++-..+++++.|.. +....++ |+.|++||++....++.+..+.+ .+..++.++++.++.+.+
T Consensus 160 ~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsns-- 235 (338)
T KOG0265|consen 160 WDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNS-- 235 (338)
T ss_pred EeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCcccccc--
Confidence 9999999999887777899999954 4555555 99999999999988988887665 466777778888988877
Q ss_pred CccEEEEEEccCCccccc-------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672 157 TKGSVLVYNVMELHSHCE-------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 223 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~-------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 223 (337)
-|.++++||++-....+. .....++|+|+++.+..|+.|.. +.+||......++.+. | |...|.
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklp-G-h~gsvn 312 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLP-G-HYGSVN 312 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcC-C-cceeEE
Confidence 599999999875432211 45678899999999999999986 5799999888888874 3 456799
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
++.|+|... +|.+++.|.+|.+=.
T Consensus 313 ~~~Fhp~e~---iils~~sdk~i~lge 336 (338)
T KOG0265|consen 313 EVDFHPTEP---IILSCSSDKTIYLGE 336 (338)
T ss_pred EeeecCCCc---EEEEeccCceeEeec
Confidence 999999999 999999999998744
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4.9e-25 Score=195.61 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=193.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc-------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
+.+..-|+.+++.|.|-.|++|+-|. +++||+.... .+.-.+.|.+..+.+...++.++.++| .-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg-------~a 236 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG-------SA 236 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-------Cc
Confidence 34566799999999999999998765 7999987652 223334567777788777888888877 45
Q ss_pred eEEEEECCCCCEEEEEE-------------cCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCee-eeeecCCCC---
Q 019672 76 RLCLFNTTTGTALRELN-------------FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAI-LDTIDTVPN--- 134 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~-------------~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~--- 134 (337)
..+|+|-...+...... |-..+++..|+|. .++.++ |++++|||+.+.+. +..|.+...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 78888865433332222 1225566677763 344454 99999999976543 333432211
Q ss_pred CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------ccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672 135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------HCE--APLAAIVLSSNGMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~ 204 (337)
...+..-++++++.++|.+- .||.|++||..+... .|. ..|+||+||+||++|++-+.|++ +|+||+
T Consensus 317 Rv~~tsC~~nrdg~~iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDL 393 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDL 393 (641)
T ss_pred ccCceeeecCCCcchhhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeec
Confidence 11223334567777877654 599999999865432 233 48999999999999999999998 599999
Q ss_pred CCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCC------CcEEEEecCCCcccCCCCccccccccccc-ccce
Q 019672 205 SEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS------GSLHVFSPGFAINQRRGGRTSSILGSILP-ESVN 276 (337)
Q Consensus 205 ~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d------g~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 276 (337)
+..+. +.....-...-+-+.++||||.+ +|++|..- |++.+||-.+.....+. .+.. +.+.
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki--------~i~~aSvv~ 462 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDTVYKI--------DISTASVVR 462 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceeeEEEe--------cCCCceEEE
Confidence 87653 33322111222456789999999 88888653 67888886554332210 0111 1223
Q ss_pred eecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEE
Q 019672 277 EVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTL 326 (337)
Q Consensus 277 ~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~ 326 (337)
+.| +++.|+|++++.||.+++| +++++++++.+..
T Consensus 463 ~~W--------------hpkLNQi~~gsgdG~~~vy-Ydp~~S~RGak~c 497 (641)
T KOG0772|consen 463 CLW--------------HPKLNQIFAGSGDGTAHVY-YDPNESIRGAKLC 497 (641)
T ss_pred Eee--------------cchhhheeeecCCCceEEE-ECccccccchhhe
Confidence 445 4556999999999999999 8999888876554
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.9e-24 Score=199.04 Aligned_cols=281 Identities=13% Similarity=0.164 Sum_probs=197.9
Q ss_pred eEEEEE-cCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCC---CEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672 10 VFFVSF-NQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSS---SLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (337)
Q Consensus 10 v~~~~f-s~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~d~~v~iwd~~~~ 85 (337)
+..+.- ...++.|++..+..+.+||.++.++....-+.+-.+.+|.|-+ +.+++++. ...+|+++..+.
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~~ 356 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPTS 356 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC-------CCceEEEecCCC
Confidence 444443 4455667777777889999988877655544444455555544 77887775 578999999887
Q ss_pred CEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCe----eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 86 TALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA----ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 86 ~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
.+..-..|...|.++....++ ++.++ |+++++|.+++.. .+.....|.+..+.++++.. ...++++++ .|
T Consensus 357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS--~D 433 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVS--QD 433 (775)
T ss_pred ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEec--CC
Confidence 776444455578888843443 33444 8999999884432 23334555555555555432 234667766 59
Q ss_pred cEEEEEEccCCc--------------ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672 159 GSVLVYNVMELH--------------SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 224 (337)
Q Consensus 159 g~v~i~d~~~~~--------------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 224 (337)
+++++|++...+ ..|...|+|++++|+.++|||||.|.+ .+||+++.++.+.++. || ...|.|
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~le~~~l~~vLs-GH-~RGvw~ 510 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDLEQLRLLGVLS-GH-TRGVWC 510 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecccCceEEEEee-CC-ccceEE
Confidence 999999997622 124588999999999999999999998 5999999999988885 43 456999
Q ss_pred EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672 225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 304 (337)
Q Consensus 225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (337)
|.|+|..+ .||++|.|.||+||.+++..-.++ +. ++...+.-+.|--.+++|++++
T Consensus 511 V~Fs~~dq---~laT~SgD~TvKIW~is~fSClkT----------~e-----------GH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 511 VSFSKNDQ---LLATCSGDKTVKIWSISTFSCLKT----------FE-----------GHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred EEeccccc---eeEeccCCceEEEEEeccceeeee----------ec-----------CccceeEeeeeeeCCcEEEecc
Confidence 99999999 999999999999999987654321 11 1111111111122348999999
Q ss_pred eCCcEEEEEEecCCCC-------eeceEEe
Q 019672 305 YNGYFVEYIFSINNCC-------ESTWTLD 327 (337)
Q Consensus 305 ~dg~~~~~~~~~~~~~-------~~~~~~~ 327 (337)
+||.+++|++++.+|. ++.|.+.
T Consensus 567 adGliKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred CCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence 9999999999999886 4566653
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-23 Score=170.10 Aligned_cols=276 Identities=11% Similarity=0.127 Sum_probs=190.6
Q ss_pred CCCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCCC---cEEEE---EeeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672 3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTG---RLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (337)
.+++++.|..++|+|- |..||+|+.+. +++|++..+ ..... .+...+..+++.+.+++++..+ -|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------FD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------FD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------cc
Confidence 4678889999999999 89899887765 799998743 22222 2345667777777777766554 59
Q ss_pred ceEEEEECCCC--CEEEEEEcCC-ceeEEEEcCCeEEEE--E-CCeEEEEECCCC---eeeeeecCCCCCceEEEEeeCC
Q 019672 75 RRLCLFNTTTG--TALRELNFLT-SILAVRLNKKRLVIV--L-REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 75 ~~v~iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
.++.||.-..+ +++..++.+. +|.+++|++++.+++ + |.+|-||.+..+ +....++.|.+....+ .++|
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V--~WHP 160 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV--IWHP 160 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE--EEcC
Confidence 99999986644 4566676554 899999987655554 4 889999998744 3444555555444444 4556
Q ss_pred CccEEEEcCCCCccEEEEEEccC-Cc--c-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672 146 NACFLAVPASTTKGSVLVYNVME-LH--S-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT 217 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v~i~d~~~-~~--~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~ 217 (337)
...+|+++++ |.+|++|+-.. .. . .|...|.+++|+|.|.+|+++++|++ ++||-..+. + .+.
T Consensus 161 t~dlL~S~SY--DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~-----~-~~~ 231 (312)
T KOG0645|consen 161 TEDLLFSCSY--DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTD-----L-SGM 231 (312)
T ss_pred CcceeEEecc--CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccC-----c-chh
Confidence 5669999996 89999997652 21 1 13479999999999999999999998 699986632 2 223
Q ss_pred cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc-c
Q 019672 218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV-K 296 (337)
Q Consensus 218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~ 296 (337)
+..+++.++|. +| .||+++.|+.|+||.-......+ ....+...... |-.-+|.+...| .
T Consensus 232 ~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d~p----~~~l~~~~~~a----------He~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 232 HSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPDEP----SWNLLAKKEGA----------HEVDVNSVQWNPKV 292 (312)
T ss_pred cccceEeeeec-cc----ceEeccCCCEEEEEEecCCCCCc----hHHHHHhhhcc----------cccccceEEEcCCC
Confidence 45679999998 66 69999999999999866322111 11111100000 001122233333 2
Q ss_pred cCEEEEEEeCCcEEEEEEe
Q 019672 297 RASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 297 ~~~l~~~~~dg~~~~~~~~ 315 (337)
.++|++++.||.+++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 4899999999999999874
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.9e-24 Score=199.67 Aligned_cols=239 Identities=14% Similarity=0.173 Sum_probs=183.9
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+..|++||+.+.|+|++.+|++|++|. ++||+..+.+++++.-+|--.+-.+.|+..+=.+++. +.|.+|+|||
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA-----SDDQTIrIWN 121 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA-----SDDQTIRIWN 121 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc-----cCCCeEEEEe
Confidence 347899999999999999999999986 6999999999998876655444445555544333444 2599999999
Q ss_pred CCCCCEEEEEEcC-CceeEEEEcC-CeEEEE-E-CCeEEEEECCCCeeee---------------------------eec
Q 019672 82 TTTGTALRELNFL-TSILAVRLNK-KRLVIV-L-REKTYIYDANTLAILD---------------------------TID 130 (337)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~-~~~~v~-~-d~~i~i~d~~~~~~~~---------------------------~~~ 130 (337)
+.+++++..++.+ +.|.+..|+| ..+++. + |.+|+|||+...+.-+ ..-
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999998765 4799999998 344443 3 9999999996321110 001
Q ss_pred CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
...+..++...+++|...++++++ .|..|++|.+...+. .|.++|.++-|+|...+|++.|+|++ |||||
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~--DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRVWD 278 (1202)
T ss_pred ecccccccceEEecCCcceEEecC--CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEEEe
Confidence 113445677778888888888877 699999999875542 35699999999999999999999998 79999
Q ss_pred cCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 204 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+...+.+++|++.+ ..-+.++-+|..+ ++|+ +.|+-+-||.++.+.
T Consensus 279 m~kRt~v~tfrren--dRFW~laahP~lN---LfAA-gHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 279 MTKRTSVQTFRREN--DRFWILAAHPELN---LFAA-GHDSGMIVFKLERER 324 (1202)
T ss_pred cccccceeeeeccC--CeEEEEEecCCcc---eeee-ecCCceEEEEEcccC
Confidence 99999999998754 4588899999998 5555 555557789887543
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=4.6e-24 Score=182.27 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=209.5
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+..|+.+|.+++.+|+.+++++|+.|.. .||++.+++..+....|.-.++++.|+.+...+++|+ .++.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd-----msG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD-----MSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC-----CCccEEEEE
Confidence 5678999999999999999999998877 9999999998888766655555555555444445554 589999999
Q ss_pred CCCCCEEEEEEcC-CceeEEEEcCCeEEE-EE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 82 TTTGTALRELNFL-TSILAVRLNKKRLVI-VL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~v-~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
..++.....+... ..+.=+.|+|...++ ++ |+.+-+|.+.+....+.+..+.. ...+=.+.|++..++++. .
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~--~ct~G~f~pdGKr~~tgy--~ 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS--PCTCGEFIPDGKRILTGY--D 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC--CcccccccCCCceEEEEe--c
Confidence 9999988887633 356678888865444 33 89999999998777777766443 334445567788888876 5
Q ss_pred ccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-C-----Cccee---E
Q 019672 158 KGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-G-----TYPST---I 222 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-~-----~~~~~---i 222 (337)
||+|++||+.+++..|+ .+..++.++.++..+.+|+.++. +++-+..+|+.+..+.. . .+... |
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~-~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV-ACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc-EEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 99999999999988776 46899999999999999999997 57888889988776641 0 11222 4
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV 302 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~ 302 (337)
-++.||..=+ +.|+|+-||+|-|||+.+.+.+...+... ......|-. . .+|++
T Consensus 290 e~~~~ss~lp---L~A~G~vdG~i~iyD~a~~~~R~~c~he~--------~V~~l~w~~-t--------------~~l~t 343 (399)
T KOG0296|consen 290 ESIPSSSKLP---LAACGSVDGTIAIYDLAASTLRHICEHED--------GVTKLKWLN-T--------------DYLLT 343 (399)
T ss_pred hhcccccccc---hhhcccccceEEEEecccchhheeccCCC--------ceEEEEEcC-c--------------chhee
Confidence 4455555555 89999999999999998765433211111 122345544 2 68999
Q ss_pred EEeCCcEEEEEEecCCC
Q 019672 303 ITYNGYFVEYIFSINNC 319 (337)
Q Consensus 303 ~~~dg~~~~~~~~~~~~ 319 (337)
+|.||.++.|+..+-..
T Consensus 344 ~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQL 360 (399)
T ss_pred eccCceEEeeeccccce
Confidence 99999999998765443
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4e-25 Score=191.42 Aligned_cols=235 Identities=14% Similarity=0.226 Sum_probs=173.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.+|..+|..+.||||.++|++++.+. +++||+.+|.+.+.... .+.....+.+.++...++.|+ .|+++..||
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs-----~dr~i~~wd 340 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS-----PDRTIIMWD 340 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC-----CCCcEEEec
Confidence 47889999999999999987776655 69999999987665432 234444444555555566663 799999999
Q ss_pred CCCCCEEEEEEcC--CceeEEEEcCCeEE--EE-ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 82 TTTGTALRELNFL--TSILAVRLNKKRLV--IV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 82 ~~~~~~~~~~~~~--~~v~~i~~~~~~~~--v~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
+..+ .+...+.- ..|.++++++++-. +. .|..|++|+..+......+..+ ..+..++.+.++.+..+.-
T Consensus 341 lDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL-- 414 (519)
T KOG0293|consen 341 LDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNL-- 414 (519)
T ss_pred CCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEc--
Confidence 8754 34433322 36888888766533 33 3899999998765444444332 3577778888888877765
Q ss_pred CccEEEEEEccCCccccc-------CceEEEEeC-CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 157 TKGSVLVYNVMELHSHCE-------APLAAIVLS-SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~-------~~i~~~~~s-~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
.+.++++||++..+.+.+ ..|-.-+|. .+..++|+||+|+. |+||+..+|+++.++. | |...|+||+|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~Ls-G-Hs~~vNcVswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLS-G-HSKTVNCVSWN 491 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeec-C-CcceeeEEecC
Confidence 589999999997665432 334444554 46689999999998 6999999999999985 3 34579999999
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 229 QSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
|... .++|++|+||||+||.....
T Consensus 492 P~~p--~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 492 PADP--EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCH--HHhhccCCCCeEEEecCCcc
Confidence 9987 59999999999999987654
No 49
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=190.62 Aligned_cols=275 Identities=12% Similarity=0.121 Sum_probs=204.5
Q ss_pred CCCCCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 3 NQSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
+.+|.++|.|++-+|.. ..+|+|+-|| +++||+...+++.....+ -+.-+++.+ +..+.+| .|++|+
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg-------dDKtvK 132 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG-------DDKTVK 132 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec-------CCccee
Confidence 46899999999999988 7789999888 599999988776655443 344444433 5555555 489999
Q ss_pred EEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc-cEEEEcCCC
Q 019672 79 LFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA-CFLAVPAST 156 (337)
Q Consensus 79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~ 156 (337)
.|-..- .++.++-..+.+.+|..+...-..++ ...|.|||..-..++.++..... .+.++.++|-. ..|++++
T Consensus 133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D--ti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD--SISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC--ceeEEecCCCcchheeeec--
Confidence 998765 57888888888888887766666666 55899999988778888765443 46677777754 4566666
Q ss_pred CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 157 TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
.|+.|.+||++....+++ ..-+.|+|+|.+--+++|++|.. ++.+|++..+.......+ |.+.|.++.|||.|+
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d-hvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD-HVSAVMDVDFSPTGQ 285 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc-cceeEEEeccCCCcc
Confidence 499999999999887765 66789999998888999999987 589999876544333333 356799999999999
Q ss_pred cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672 233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY 312 (337)
Q Consensus 233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~ 312 (337)
-+++||-|.+|+||.......+- .|...-....+.-.|+ .|.++|++|+.||.++.|
T Consensus 286 ---EfvsgsyDksIRIf~~~~~~SRd------iYhtkRMq~V~~Vk~S--------------~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 286 ---EFVSGSYDKSIRIFPVNHGHSRD------IYHTKRMQHVFCVKYS--------------MDSKYIISGSDDGNVRLW 342 (433)
T ss_pred ---hhccccccceEEEeecCCCcchh------hhhHhhhheeeEEEEe--------------ccccEEEecCCCcceeee
Confidence 99999999999999987654311 1111111111222343 455899999999999999
Q ss_pred EEec
Q 019672 313 IFSI 316 (337)
Q Consensus 313 ~~~~ 316 (337)
.-..
T Consensus 343 ka~A 346 (433)
T KOG0268|consen 343 KAKA 346 (433)
T ss_pred ecch
Confidence 7643
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=199.91 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=183.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeC-CCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDS-STGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.++...|+.++|+|||+++++|++|. ++|||+ +.+..+.....|...+.++.|++..-.+++++ .|++|+|||
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-----~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-----DDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec-----CCCcEEEEe
Confidence 46788999999999999999999887 599999 55577777666554444444444332233332 599999999
Q ss_pred CCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCe--eeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 82 TTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 82 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
+++++++..+..+. .|.+++|+++...++. |+.|+|||+.++. .+..+....++..+..+.++|++.+++++.
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~- 353 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS- 353 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-
Confidence 99999999987665 8999999877644443 8999999999998 456665544433456677788888999887
Q ss_pred CCccEEEEEEccCCccccc-----C---ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 156 TTKGSVLVYNVMELHSHCE-----A---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~~~-----~---~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
.|+.+++||+........ . .+.+...++.|+++.+|+.|+. |++||+.++..+..+..+ ....+..+++
T Consensus 354 -~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~h-~~~~~~~~~~ 430 (456)
T KOG0266|consen 354 -LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEGH-SKAAVSDLSS 430 (456)
T ss_pred -CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcCC-CCCceecccc
Confidence 589999999998765422 2 4455566889999999999997 699999998888777532 2567899999
Q ss_pred ecCCCcccEEEEEe--CCCcEEEEecC
Q 019672 228 GQSMQFQDILVATS--SSGSLHVFSPG 252 (337)
Q Consensus 228 s~dg~~~~~las~s--~dg~v~iw~l~ 252 (337)
+|..+ ++++++ .|+.|++|..+
T Consensus 431 ~~~~~---~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTEN---LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcC---eeeecCcCCCceEEEecCC
Confidence 99998 999998 78999999754
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.7e-24 Score=171.68 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=174.0
Q ss_pred eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECC
Q 019672 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDAN 121 (337)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~ 121 (337)
.+.+..+.+.-++|+...++ .|++|++||+..|.+++++..++ +|.+++.+.+. +..++ |..+.+||+.
T Consensus 17 qgaV~avryN~dGnY~ltcG-------sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCG-------SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccceEEEEEccCCCEEEEcC-------CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 35566666666777766555 49999999999999999998765 89988876544 33333 8899999999
Q ss_pred CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--cc-----cCceEEEEeCCCCCEEEEEeC
Q 019672 122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HC-----EAPLAAIVLSSNGMYIATASE 194 (337)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~~-----~~~i~~~~~s~dg~~lat~s~ 194 (337)
+++.++.+.+|.. .+.++.++.+...+++++ -|.++++||.++... ++ +..|.++.++ +..|++||.
T Consensus 90 TGkv~Rr~rgH~a--qVNtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 90 TGKVDRRFRGHLA--QVNTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred cCeeeeecccccc--eeeEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence 9999999987654 677888888888888887 599999999987643 22 1678888875 568999999
Q ss_pred CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc
Q 019672 195 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES 274 (337)
Q Consensus 195 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (337)
||+ +|.||++.|+.....- ..+|+|++||+|++ ..++++.|+++|+.|-++++-.. .+....
T Consensus 164 DGt-vRtydiR~G~l~sDy~----g~pit~vs~s~d~n---c~La~~l~stlrLlDk~tGklL~----------sYkGhk 225 (307)
T KOG0316|consen 164 DGT-VRTYDIRKGTLSSDYF----GHPITSVSFSKDGN---CSLASSLDSTLRLLDKETGKLLK----------SYKGHK 225 (307)
T ss_pred CCc-EEEEEeecceeehhhc----CCcceeEEecCCCC---EEEEeeccceeeecccchhHHHH----------Hhcccc
Confidence 999 5999999998765442 34799999999999 99999999999999977664321 111111
Q ss_pred ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
-.+ + +.-+........++.|++||.++.|+|-.++
T Consensus 226 n~e-y--------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 226 NME-Y--------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred cce-e--------eeeeeecccceeEEeccCCceEEEEEeccce
Confidence 000 0 0000112233679999999999999996543
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=186.29 Aligned_cols=276 Identities=14% Similarity=0.135 Sum_probs=197.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC---cEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG---RLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v 77 (337)
+.|.++|+.++||++|++||+++.+.. .+|.+..- ++.++. +..++..+.+.++.+++..++. |..+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~-------~e~~ 293 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF-------DEVL 293 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc-------hHhe
Confidence 478899999999999999999998875 78875432 334443 3356777788888888776654 7789
Q ss_pred EEEECCCCCEEEEEEcC--CceeEEEEcCCeEE--EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 78 CLFNTTTGTALRELNFL--TSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 78 ~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~--v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
++||..+|.....++.. -.+.+.+|.|+++- +++ |+++..||+.. ..+...+.- ....+..++..+|+.++..
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gv-r~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGV-RDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccccc-ccceeEEEEEcCCCcEEEE
Confidence 99999999988887765 46788888887643 333 88999999954 334444321 2235667777778888877
Q ss_pred cCCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce--eEEEEE
Q 019672 153 PASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS--TIFSLS 226 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~--~i~~l~ 226 (337)
.. .|..|++|+..+.... .+.+|+++++|.||+++.+.=.+.. |++||++..+.+.++. |+..+ .|.+ +
T Consensus 372 v~--~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~-Ghkq~~fiIrS-C 446 (519)
T KOG0293|consen 372 VT--VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYF-GHKQGHFIIRS-C 446 (519)
T ss_pred Ee--cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhh-cccccceEEEe-c
Confidence 77 5899999998765332 2389999999999999888777766 6999999887777664 43333 2555 5
Q ss_pred ee-cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcc-cCEEEEEE
Q 019672 227 FG-QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK-RASVSVIT 304 (337)
Q Consensus 227 fs-~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~l~~~~ 304 (337)
|- -+.. ++|+||.|+.|+||+...++... .++.. ..-++.+++.|. ..++++++
T Consensus 447 Fgg~~~~---fiaSGSED~kvyIWhr~sgkll~-----------~LsGH----------s~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 447 FGGGNDK---FIASGSEDSKVYIWHRISGKLLA-----------VLSGH----------SKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred cCCCCcc---eEEecCCCceEEEEEccCCceeE-----------eecCC----------cceeeEEecCCCCHHHhhccC
Confidence 65 3445 99999999999999987665422 22211 111222333332 24577889
Q ss_pred eCCcEEEEEEecC
Q 019672 305 YNGYFVEYIFSIN 317 (337)
Q Consensus 305 ~dg~~~~~~~~~~ 317 (337)
.||+++||.....
T Consensus 503 DDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 503 DDGTIRIWGPSDN 515 (519)
T ss_pred CCCeEEEecCCcc
Confidence 9999999988755
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=184.70 Aligned_cols=232 Identities=13% Similarity=0.184 Sum_probs=179.1
Q ss_pred eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECC
Q 019672 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDAN 121 (337)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~ 121 (337)
.+.+.++++.+....++..+ .|++++|||+.+|++..++. +-+.|..+++++.+ ++.++ |+.|+.||+.
T Consensus 151 lgWVr~vavdP~n~wf~tgs-------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred cceEEEEeeCCCceeEEecC-------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 35566777766655554433 59999999999999999988 44678999998654 44454 8899999999
Q ss_pred CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCC
Q 019672 122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQG 196 (337)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg 196 (337)
..+.++.+..| -.++.+++.+|.-..|+++|+ |.+++|||+++...+ |+.+|..+.+.|-...++|||.|+
T Consensus 224 ~nkvIR~YhGH--lS~V~~L~lhPTldvl~t~gr--Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 224 YNKVIRHYHGH--LSGVYCLDLHPTLDVLVTGGR--DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hhhhHHHhccc--cceeEEEeccccceeEEecCC--cceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 99888888654 457889998888889999994 999999999988765 459999999999888899999999
Q ss_pred cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccce
Q 019672 197 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVN 276 (337)
Q Consensus 197 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (337)
+ ||+||+..|+...++. +|.-.|.+++.+|... .+|++|.| .|+-|++..+.-.. . +.
T Consensus 300 t-vrlWDl~agkt~~tlt--~hkksvral~lhP~e~---~fASas~d-nik~w~~p~g~f~~----------n-ls---- 357 (460)
T KOG0285|consen 300 T-VRLWDLRAGKTMITLT--HHKKSVRALCLHPKEN---LFASASPD-NIKQWKLPEGEFLQ----------N-LS---- 357 (460)
T ss_pred e-EEEeeeccCceeEeee--cccceeeEEecCCchh---hhhccCCc-cceeccCCccchhh----------c-cc----
Confidence 8 6999999999988875 3456799999999987 88888887 58999987654321 1 11
Q ss_pred eecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 277 EVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 277 ~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
.+....+.+... .+..+++|+.+|.+..|+++.-
T Consensus 358 ------gh~~iintl~~n-sD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 358 ------GHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred ------cccceeeeeeec-cCceEEEcCCceEEEEEecCcC
Confidence 111122222222 3378999999999999988654
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.3e-24 Score=177.19 Aligned_cols=236 Identities=12% Similarity=0.170 Sum_probs=179.0
Q ss_pred CCCCCCeEEEEEc---CCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 4 QSSSYPVFFVSFN---QDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 4 ~~~~~~v~~~~fs---~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
++|..||-.++|+ |+|-+|++++.|+- .+-+-++|.-+-+..++.-.+....-+.|.....++ .+|-+-++
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasa-----aadftakv 85 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASA-----AADFTAKV 85 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhh-----cccchhhh
Confidence 3678899999997 58888999999986 777778887665554443333333334444333333 36889999
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCC--------------------------------------------eEEEE-E-CC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKK--------------------------------------------RLVIV-L-RE 113 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~--------------------------------------------~~~v~-~-d~ 113 (337)
||.-+|..+..+.+..-|.+++|+.+ .-++. . |+
T Consensus 86 w~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 99999888877776666666666543 22222 2 78
Q ss_pred eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEE
Q 019672 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYI 189 (337)
Q Consensus 114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~l 189 (337)
+|++||.+++..++++....+ +.++-.++++.++.++. .+.|.+||..+...+.. -.|.+..++|+-..+
T Consensus 166 tVRLWD~rTgt~v~sL~~~s~---VtSlEvs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFNSP---VTSLEVSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFF 239 (334)
T ss_pred ceEEEEeccCcEEEEEecCCC---CcceeeccCCCEEEEec---CceeEEeccccccceeeccCccccccccccCCCceE
Confidence 999999999999999877544 34445566677776654 46799999998876643 668999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 190 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
++|++|+. ++.||..+|+.+..+..+ |..+|.||.|||||. ..|+||.||+|+||.+...+
T Consensus 240 VaGged~~-~~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE---~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 240 VAGGEDFK-VYKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGE---LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EecCcceE-EEEEeccCCceeeecccC-CCCceEEEEECCCCc---eeeccCCCceEEEEEecCCC
Confidence 99999997 589999999998876455 457899999999999 99999999999999976443
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.2e-24 Score=194.11 Aligned_cols=234 Identities=13% Similarity=0.145 Sum_probs=188.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
.+.|+++.|+++|++||+|..+|. .|||....+.+..... +...+-++.+....+.. +. .|+.|..+|++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lss-Gs------r~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSS-GS------RDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEE-ec------CCCcEEEEEEec
Confidence 678999999999999999999995 9999988887766655 44455556666554433 33 489999999998
Q ss_pred CCEEEE-EE-cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 85 GTALRE-LN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 85 ~~~~~~-~~-~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
.+.... +. |.+.|+.++|++++...++ |+.+.|||....++...+..|......++++|.. ..+||++|...|+
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-SGLLATGGGSADR 368 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-cCceEEcCCCccc
Confidence 876655 44 4568999999998877766 8899999998888888887776655556666643 4488998887899
Q ss_pred EEEEEEccCCccccc----CceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 160 SVLVYNVMELHSHCE----APLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 160 ~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
.|++||..++..++. +.|.+|.|++..+.|+++. .+.. |.||+..+.+++..+. + |...|..+++||||.
T Consensus 369 ~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~-g-H~~RVl~la~SPdg~- 444 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELL-G-HTSRVLYLALSPDGE- 444 (484)
T ss_pred EEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeec-C-CcceeEEEEECCCCC-
Confidence 999999999887654 8899999999988777654 3444 6899999988887774 3 466799999999999
Q ss_pred ccEEEEEeCCCcEEEEecCCC
Q 019672 234 QDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~ 254 (337)
.+++|+.|.|+++|++-..
T Consensus 445 --~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 445 --TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --EEEEecccCcEEeccccCC
Confidence 9999999999999998654
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=5.9e-25 Score=193.75 Aligned_cols=234 Identities=12% Similarity=0.236 Sum_probs=184.5
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
..+|..+|..++||++|+.|.+++-|+ +++||+++|+.+...+. ....++.+.++...+.++|+ .|++|+.|
T Consensus 254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~------sd~ki~~w 327 (503)
T KOG0282|consen 254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG------SDKKIRQW 327 (503)
T ss_pred hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec------CCCcEEEE
Confidence 457889999999999999988888777 59999999999887765 34566777777766777777 69999999
Q ss_pred ECCCCCEEEEEEcC-CceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNFL-TSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~~-~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
|+++++.+.++..+ +.|..|.|-+ .+++.++ |++++||+.+.+..+..+.. .+....-++..+|++.+++.-+
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs-- 404 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQS-- 404 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhc--
Confidence 99999988888654 5888888844 3444444 77999999988866655432 2222334666677888988777
Q ss_pred CccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672 157 TKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS 226 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~ 226 (337)
.|+.|.++.+......+. +.-..|.|||||.+|++|+.||.+ .+||.++-+.+..+.. +..++..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v-~~wdwkt~kl~~~lka--h~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV-NFWDWKTTKLVSKLKA--HDQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE-EEeechhhhhhhcccc--CCcceEEEE
Confidence 589999998754332211 556789999999999999999984 8999999998888853 356788999
Q ss_pred eecCCCcccEEEEEeCCCcEEEEe
Q 019672 227 FGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 227 fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
|+|... +.+|+++.||.|++|+
T Consensus 482 wHP~e~--Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEP--SKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCc--ceeEecccCceeEecC
Confidence 999887 5899999999999996
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=8.9e-24 Score=194.95 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=216.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
.+|...|++++|+.|...+++|+.+.+++||.++.+.+.+....-+-...+.+..+++++ |. ..|.+.++|+.
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~-G~------k~Gel~vfdla 442 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVL-GT------KNGELQVFDLA 442 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEE-ec------cCCceEEEEee
Confidence 478889999999999999999999999999999999999987664444555555555443 33 47899999999
Q ss_pred CCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCe-----e--------eeeecCCCCCceEEEEeeCCC
Q 019672 84 TGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA-----I--------LDTIDTVPNLKGLCAFSPSLN 146 (337)
Q Consensus 84 ~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~ 146 (337)
....+.++. |.+.|..++..|++ ++.++ |.+|++||+.-.. . .++++. +..+.|++.+||
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel---~ddvL~v~~Spd 519 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL---EDDVLCVSVSPD 519 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec---cccEEEEEEcCC
Confidence 888777665 55689999987754 55555 9999999984211 1 112222 345789999999
Q ss_pred ccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee
Q 019672 147 ACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 221 (337)
+.+||++- -|.+|+||=+.+.+- .|.-||.|+.+|||+++++|||.|.+ |+||-+.-|.+-+.+- .|...
T Consensus 520 gk~LaVsL--LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~f--AHdDS 594 (888)
T KOG0306|consen 520 GKLLAVSL--LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFF--AHDDS 594 (888)
T ss_pred CcEEEEEe--ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhh--cccCc
Confidence 99999887 599999998888763 36799999999999999999999998 6999999998866663 24567
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS 301 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~ 301 (337)
|.++.|-|... ++.+++.|+.|+-||-++.... ..++.+..++|..+- .+.+.+++
T Consensus 595 vm~V~F~P~~~---~FFt~gKD~kvKqWDg~kFe~i-----------q~L~~H~~ev~cLav----------~~~G~~vv 650 (888)
T KOG0306|consen 595 VMSVQFLPKTH---LFFTCGKDGKVKQWDGEKFEEI-----------QKLDGHHSEVWCLAV----------SPNGSFVV 650 (888)
T ss_pred eeEEEEcccce---eEEEecCcceEEeechhhhhhh-----------eeeccchheeeeeEE----------cCCCCeEE
Confidence 99999999998 9999999999999997665542 345566667887754 45568999
Q ss_pred EEEeCCcEEEEEEec
Q 019672 302 VITYNGYFVEYIFSI 316 (337)
Q Consensus 302 ~~~~dg~~~~~~~~~ 316 (337)
+++.|-++++|....
T Consensus 651 s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 651 SSSHDKSIRLWERTD 665 (888)
T ss_pred eccCCceeEeeeccC
Confidence 999999999998754
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=6.6e-23 Score=205.56 Aligned_cols=229 Identities=18% Similarity=0.202 Sum_probs=169.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEcc-CCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 7 SYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 7 ~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
..+|.+++|++ ++++|++++.++ +++||+.+++.+.....+. +..+.+.+ +++.++..+ .|++|++||
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd 604 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWS 604 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEE
Confidence 45789999987 478899888877 5999999888776654443 44444443 234444333 499999999
Q ss_pred CCCCCEEEEEEcCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 82 TTTGTALRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
+++++.+..+..+..+.++.|++ ..++++. |+.|++||+++.+ .+..+..+. ..+.++.+. ++.++++++
T Consensus 605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~-~~~~lvs~s-- 679 (793)
T PLN00181 605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFV-DSSTLVSSS-- 679 (793)
T ss_pred CCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC--CCEEEEEEe-CCCEEEEEE--
Confidence 99999998888778899998843 3455555 8999999998765 344554443 345566664 456778777
Q ss_pred CccEEEEEEccCC------ccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc----------
Q 019672 157 TKGSVLVYNVMEL------HSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR---------- 215 (337)
Q Consensus 157 ~dg~v~i~d~~~~------~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~---------- 215 (337)
.|++|++||+... ..+ |...+++++|+|++.+||+|+.||+ |++|+...+..+..+..
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence 5999999999743 111 3477899999999999999999998 68999876654432211
Q ss_pred -CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672 216 -GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 251 (337)
Q Consensus 216 -~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l 251 (337)
..+...|.+++|+|++. +|++|+.||+|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSS---TLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEec
Confidence 11234599999999999 9999999999999986
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=5.2e-23 Score=175.90 Aligned_cols=234 Identities=13% Similarity=0.188 Sum_probs=172.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
..+|+..|+++.||.||.+||+|.-+| ++||...++....... ..++..+.+.+ ...++..| ..|+.|.+
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp--~a~illAG-----~~DGsvWm 174 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAG-----STDGSVWM 174 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc--cccEEEee-----cCCCcEEE
Confidence 357999999999999999999999887 5999999997766653 34455555443 33333333 26999999
Q ss_pred EECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCC-------------------Cc
Q 019672 80 FNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPN-------------------LK 136 (337)
Q Consensus 80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~-------------------~~ 136 (337)
|.+..+.....+.. ..++.+=.|.|++ ++.+. |++|++||+.++++++.+....+ ..
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 99988655555544 4477776776554 44444 89999999999998887751110 00
Q ss_pred eE----------EEEeeC-----------------------CCccEEEEcCCCCccEEEEEEccCCccc----ccCceEE
Q 019672 137 GL----------CAFSPS-----------------------LNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLAA 179 (337)
Q Consensus 137 ~~----------~~~~~~-----------------------~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~~ 179 (337)
+. +-.+.+ ..-++.|+++ -||+|.|||+.+.+.. |+.+|..
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~--vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS--VDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc--ccceEEEEecccchhheeccCCCceEE
Confidence 00 001111 1112334443 6999999999877654 4488999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+.|-+ ..+|++++.+|. ||.||.++|+++.++. | |...|.+++++|+.+ +++++|.|++.+||+++
T Consensus 333 l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~-G-H~~~Il~f~ls~~~~---~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYT-G-HQMGILDFALSPQKR---LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCce-EEeeeccccceEEEEe-c-CchheeEEEEcCCCc---EEEEecCCCeEEEEecC
Confidence 99999 679999999997 6999999999999885 4 467899999999999 99999999999999874
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.5e-23 Score=194.95 Aligned_cols=239 Identities=13% Similarity=0.140 Sum_probs=186.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
++....|-.++|+|..-++.++--.|+ ++||..=+.++.....|+-.+-.+.|++..=++++|| .|.+|++|+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG-----DDykIkVWnY 80 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG-----DDYKIKVWNY 80 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC-----CccEEEEEec
Confidence 455678999999999999999988885 9999877777655544333333444555555567776 6999999999
Q ss_pred CCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 83 TTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
++.+++.++..+ ..|+.+.|++.+-.+.+ |.+|+||+..+.+.+..+..|.+ .++|-.++|...++++++ -|
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIVSaS--LD 156 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIVSAS--LD 156 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEEEec--cc
Confidence 999999887655 47999999998866544 67999999999999999876644 788888888888888887 59
Q ss_pred cEEEEEEccCCccc----------------------------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672 159 GSVLVYNVMELHSH----------------------------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 159 g~v~i~d~~~~~~~----------------------------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~ 204 (337)
.+|+|||+...+.. |...|+-++|+|.-.+|++|++|.. |++|.+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm 235 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM 235 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence 99999998643211 1256899999999999999999976 799998
Q ss_pred CCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 205 SEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 205 ~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
..-+. .....+|| ...|.|+-|+|... ++++.|.|++|+|||+.+.+.
T Consensus 236 netKaWEvDtcrgH-~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGH-YNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred ccccceeehhhhcc-cCCcceEEecCccc---eeEecCCCccEEEEecccccc
Confidence 65432 11223453 45799999999887 999999999999999976543
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=188.46 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=198.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~ 78 (337)
...|.+++..+.|-++...|++|+.+. +++|++...+ ++-...+..-.+..+.|++ +...+.++ .|+.++
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas------~d~~~r 244 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS------NDKNLR 244 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec------CCCcee
Confidence 457889999999999988899988877 5999988776 2223322222233444444 23333343 599999
Q ss_pred EEECCCCCEEEEEEcCC-ceeEEEEcCCeE-EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 79 LFNTTTGTALRELNFLT-SILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 79 iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~-~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
+||....+...++..|. .|+++.|..... +|.+ |.+|++||+......+++........+++ + ...+++|
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~---~---~~~~~Sg 318 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC---S---ISDVISG 318 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe---c---ceeeeec
Confidence 99999999888887665 899998865554 4433 78999999998877777654333333332 1 2444555
Q ss_pred CCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc--ceeEEEEEee
Q 019672 155 STTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSFG 228 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~l~fs 228 (337)
. .|+.|++||.++...... +.|+++..+++|..|.+.+.|.+ +.+.|+++.+....+..... .+..+.+.||
T Consensus 319 H-~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 319 H-FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred c-cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEEC
Confidence 5 699999999998876543 88999999999999999999987 69999999887777642211 1248889999
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccc-ccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672 229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP-ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG 307 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg 307 (337)
|++. |+|+||.||.|+||++.+++-..... ....+ ......|++.+ ..+++.+.++
T Consensus 397 pd~~---YvaAGS~dgsv~iW~v~tgKlE~~l~------~s~s~~aI~s~~W~~sG--------------~~Llsadk~~ 453 (459)
T KOG0288|consen 397 PDGS---YVAAGSADGSVYIWSVFTGKLEKVLS------LSTSNAAITSLSWNPSG--------------SGLLSADKQK 453 (459)
T ss_pred CCCc---eeeeccCCCcEEEEEccCceEEEEec------cCCCCcceEEEEEcCCC--------------chhhcccCCc
Confidence 9999 99999999999999998876543211 11111 34456777755 6788888888
Q ss_pred cEEEEE
Q 019672 308 YFVEYI 313 (337)
Q Consensus 308 ~~~~~~ 313 (337)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 888883
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.5e-22 Score=186.90 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=197.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+++|+..|+++.|+..|.+||+|+.|+ +.|||+-...-++..++|.-.++.+.|...--.+++.+ .|+.|++||
T Consensus 103 fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~s-----KDs~iK~Wd 177 (888)
T KOG0306|consen 103 FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVS-----KDSMIKFWD 177 (888)
T ss_pred ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEec-----cCceEEEEe
Confidence 457999999999999999999999998 59999988888888887777777766655222233332 599999999
Q ss_pred CCCCCEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCC------------------------CeeeeeecC----
Q 019672 82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANT------------------------LAILDTIDT---- 131 (337)
Q Consensus 82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~------------------------~~~~~~~~~---- 131 (337)
+++..+..+.- +...+.++.+.++.++.+. |..+++|++.. ++.+.....
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 99988877653 4457888888776665555 77777887710 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 019672 132 -------------------------------------------------------------------------------- 131 (337)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (337)
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence
Q ss_pred --------------------------------CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------
Q 019672 132 --------------------------------VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-------- 171 (337)
Q Consensus 132 --------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-------- 171 (337)
..+...+-+++.+.++..+++++ .+.++||+..+.++
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga---~~SikiWn~~t~kciRTi~~~y 414 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA---GESIKIWNRDTLKCIRTITCGY 414 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC---CCcEEEEEccCcceeEEecccc
Confidence 00000123445555555666554 45666666553321
Q ss_pred -------------------------------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-----Cce
Q 019672 172 -------------------------------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-----ATK 209 (337)
Q Consensus 172 -------------------------------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-----~~~ 209 (337)
.|++.|..++.+||++.++|||.|.+ |++||..- |..
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSVPGTQ 493 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEeccCccc
Confidence 13488999999999999999999987 69999741 222
Q ss_pred eEeeccCCc-----ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccc
Q 019672 210 SYSFRRGTY-----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH 284 (337)
Q Consensus 210 ~~~~~~~~~-----~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 284 (337)
-+.+...+. ...|.|+++||||+ +||++--|+||+||-+++-+=.. ...|.-||
T Consensus 494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk---~LaVsLLdnTVkVyflDtlKFfl------sLYGHkLP------------ 552 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLCVSVSPDGK---LLAVSLLDNTVKVYFLDTLKFFL------SLYGHKLP------------ 552 (888)
T ss_pred ceeeeeccceEEeccccEEEEEEcCCCc---EEEEEeccCeEEEEEecceeeee------eecccccc------------
Confidence 111211111 23599999999999 99999999999999998654211 22233344
Q ss_pred eeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceE
Q 019672 285 HVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWT 325 (337)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~ 325 (337)
+..+...++.+.|++++.|..+++|.++--.|-...+.
T Consensus 553 ---V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 553 ---VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred ---eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 23334467779999999999999999988777654444
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-22 Score=185.18 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=205.2
Q ss_pred EEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672 11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL 88 (337)
Q Consensus 11 ~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~ 88 (337)
+-++|+ ....||+|....+.+|+..+++...-.+ ...+..+.+.+++..+++... ++.|.|||.++.+.+
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~-------~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS-------DGTVQIWDVKEQKKT 252 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec-------CCeEEEEehhhcccc
Confidence 345777 4456899999999999999887543333 356777777778888877654 899999999998888
Q ss_pred EEEEc--CCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672 89 RELNF--LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (337)
Q Consensus 89 ~~~~~--~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d 165 (337)
.++.. ...|-+++|+...+..+. ++.|..+|++..+.... ....+...+|.+.+++++.++|++| .|+.+.|||
T Consensus 253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGg--nDN~~~Iwd 329 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGG--NDNVVFIWD 329 (484)
T ss_pred ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCC--CccceEecc
Confidence 88776 458999999976666665 89999999998766555 2334566899999999999999998 599999999
Q ss_pred ccCCccc-----ccCceEEEEeCC-CCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672 166 VMELHSH-----CEAPLAAIVLSS-NGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 237 (337)
Q Consensus 166 ~~~~~~~-----~~~~i~~~~~s~-dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l 237 (337)
....... |++.|.+++|+| ...+||+|+ .|+. |++||+.+|+.+..... .+.|.+|.|++..+ -|
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~k---Ei 402 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYK---EL 402 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCC---EE
Confidence 9655543 459999999999 667899875 6776 79999999999887753 45799999999987 45
Q ss_pred EEEe--CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 238 VATS--SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 238 as~s--~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
+++. .++.|.||+..+.+.... ...|...+.+++..|++.+|++|+.|.+++.|++.
T Consensus 403 ~sthG~s~n~i~lw~~ps~~~~~~---------------------l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPSMKLVAE---------------------LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEecCCCCCcEEEEeccccceeee---------------------ecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 5443 346799999877443221 11222233444446677999999999999999997
Q ss_pred cC
Q 019672 316 IN 317 (337)
Q Consensus 316 ~~ 317 (337)
+.
T Consensus 462 ~~ 463 (484)
T KOG0305|consen 462 DE 463 (484)
T ss_pred CC
Confidence 75
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.8e-22 Score=174.80 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=208.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
....|+++...|....+++|+.+ ...+||..+++.+....++...++...+++.......+ ++|..|+||....
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~a-----Sad~~i~vws~~~ 292 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITA-----SADEIIRVWSVPL 292 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeec-----CCcceEEeecccc
Confidence 34578899988887788999988 57999999999888888888888888887766555555 3799999999765
Q ss_pred CCEEE-EEEcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672 85 GTALR-ELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS 160 (337)
Q Consensus 85 ~~~~~-~~~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~ 160 (337)
..... ...+.++|+.+..++ ++++.+. |+...+.|++++..+.......+...+.+..++||+..++++. .||.
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt--~d~~ 370 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT--PDGV 370 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC--CCce
Confidence 54333 345667999998865 4555555 7899999999998876665434456678889999998888876 5999
Q ss_pred EEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672 161 VLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235 (337)
Q Consensus 161 v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~ 235 (337)
|+|||+.++... |+++|..++|+.+|.+||++++|+. |++||++.-+..+++.... ..++.++.|.+.|+
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt--- 445 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGT--- 445 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeeccc-cccceeEEEcCCCC---
Confidence 999999987643 6699999999999999999999998 6999999888777775432 23699999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~ 314 (337)
+|+.++.|=+|++++-.+. .+..+. .++ .+..+...+.|+....++++++.|..+++|.+
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k--------~W~~~~-~~~----------~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTK--------SWTEIK-ELA----------DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeecceeEEEEEecccc--------cceeee-hhh----------hcccccceeeecccceEEeeccchhheEEeec
Confidence 9999988766666652211 111111 111 11112223445666678889999999888865
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.7e-23 Score=182.03 Aligned_cols=267 Identities=14% Similarity=0.154 Sum_probs=186.8
Q ss_pred CCCeEEEEEcCCCCE-EEEEcCCceEEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 7 SYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~-la~g~~~g~~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
.++|++++|+|..-+ +|+.+..++.+|+..+...+.. .-...+..+++..++.+++.. + ..|.|+|+|.+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG-D------~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG-D------ESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc-C------CcCcEEEeccc
Confidence 457999999997766 8999999999999877644322 112445556665556555433 2 47999999976
Q ss_pred CCCEEEEE-EcCCceeEEEEcCCeEE---EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc-EEEEcCCCC
Q 019672 84 TGTALREL-NFLTSILAVRLNKKRLV---IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTT 157 (337)
Q Consensus 84 ~~~~~~~~-~~~~~v~~i~~~~~~~~---v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~~~~~ 157 (337)
+...+..+ .+..+|..+.|+++... .+. |..+++||+.+...+..+..+.+ .+-+.+.+|.+. .++++| .
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtGs--Y 174 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTGS--Y 174 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEecC--C
Confidence 64444444 34568888998775432 233 55889999998876556665544 555556655554 555666 4
Q ss_pred ccEEEEEEccCCc-c----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 158 KGSVLVYNVMELH-S----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 158 dg~v~i~d~~~~~-~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
||.|++||+++.. . -|..||..+.+-|.|.+||+++.. .+||||+.+|..+-..... |.-.|+||++..+++
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn--~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN--SVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDST 251 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC--eEEEEEecCCceehhhhhc-ccceEEEEEeecCCc
Confidence 9999999998763 2 245999999999999999998854 5799999966554333222 455799999999999
Q ss_pred cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672 233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY 312 (337)
Q Consensus 233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~ 312 (337)
.|++||-|+.|+|||+..-+-.. +++|.+.++ .++-.+++..+++|-+||.+.+=
T Consensus 252 ---rLlS~sLD~~VKVfd~t~~Kvv~----s~~~~~pvL------------------siavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 252 ---RLLSGSLDRHVKVFDTTNYKVVH----SWKYPGPVL------------------SIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ---eEeecccccceEEEEccceEEEE----eeeccccee------------------eEEecCCCceEEEecccceeeee
Confidence 99999999999999976544321 112221111 11224566889999999988776
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=190.61 Aligned_cols=270 Identities=14% Similarity=0.147 Sum_probs=200.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE-Eee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE-RAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+...+++..|. ..++.+++++.. ++|+..++..+.. ..+ +++..+++..-.+.++..+ .|.++++||
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS-------~D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS-------TDKTERVWD 277 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-------cCCcEEeEe
Confidence 35668888888 446777777764 8999999988776 544 4555555554366665554 499999999
Q ss_pred CCCCCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 82 TTTGTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
..+|+++..+..+ +.|.++...+..++.++ |.+|++|++.+++.++.+..+.. .+.++..+ +.++++++ .||
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--~V~~v~~~--~~~lvsgs--~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--PVNCVQLD--EPLLVSGS--YDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc--cEEEEEec--CCEEEEEe--cCc
Confidence 9999999998854 46788877776666644 99999999999999998876444 46666665 44777777 489
Q ss_pred EEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-ceeEeeccCCcceeEEEEEeecCCCc
Q 019672 160 SVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 160 ~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
+|++||+.+++.+ |...|.++.+.+. ..+.+|+.|++ |++||+.++ +++.++. .+.+.+.++.+. ++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~--~h~~~v~~l~~~--~~- 424 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQ--GHTSLVSSLLLR--DN- 424 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhc--CCcccccccccc--cc-
Confidence 9999999988766 4489999998776 79999999987 799999999 8888875 245556665554 56
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
+|++++.|++|++||...+...+..+.+ ....++... .+ ...+++.+.||++++|+
T Consensus 425 --~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~----------~~~~v~~l~----------~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 425 --FLVSSSADGTIKLWDAEEGECLRTLEGR----------HVGGVSALA----------LG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred --eeEeccccccEEEeecccCceeeeeccC----------CcccEEEee----------cC--cceEEEEecCCeeEEEe
Confidence 8999999999999999877654431111 001111111 11 26799999999999999
Q ss_pred EecCCCCe
Q 019672 314 FSINNCCE 321 (337)
Q Consensus 314 ~~~~~~~~ 321 (337)
+++.+..+
T Consensus 481 l~~~~~~~ 488 (537)
T KOG0274|consen 481 LRSGTLIR 488 (537)
T ss_pred cccCchhh
Confidence 98776653
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=175.65 Aligned_cols=218 Identities=15% Similarity=0.211 Sum_probs=167.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.++|+.++++.+|+|||+++|+|+.|. ++|+|++-. +..... .++ ..++
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildverm--laks~~-----~em---------~~~~-------------- 157 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERM--LAKSKP-----KEM---------ISGD-------------- 157 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhh--hhhcch-----hhh---------ccCC--------------
Confidence 357889999999999999999999876 699997521 110000 011 1111
Q ss_pred CCCCC-EEEE-EEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 82 TTTGT-ALRE-LNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 82 ~~~~~-~~~~-~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
...+. .+++ +.|..+|.++.|+|..-++++ |++|++||+......+.++.-.+...+.+++++|.+.+++.+.
T Consensus 158 ~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-- 235 (430)
T KOG0640|consen 158 TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-- 235 (430)
T ss_pred cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--
Confidence 11111 2333 456679999999987655544 8899999997654333343333445677888889888988876
Q ss_pred CccEEEEEEccCCcc--------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 157 TKGSVLVYNVMELHS--------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
+-..+++||+.+-+. .|++.|+++.+|+.|++-+|||.||. |||||--+++++.++...|..++|.+..|+
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 457899999987654 35589999999999999999999997 799999999999999888888899999999
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 229 QSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.+|+ |+++.+.|.+|++|.+.++..
T Consensus 315 kn~k---yiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 315 KNGK---YILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cCCe---EEeecCCcceeeeeeecCCce
Confidence 9999 999999999999999988654
No 68
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=7.3e-22 Score=186.60 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=152.0
Q ss_pred CCceEEEEECCCCCEEEEEEcC-CceeEEEEcCC---eEEEEE-CCeEEEEECCCCe--------eeeeecCCCCCceEE
Q 019672 73 SPRRLCLFNTTTGTALRELNFL-TSILAVRLNKK---RLVIVL-REKTYIYDANTLA--------ILDTIDTVPNLKGLC 139 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~ 139 (337)
.++.|++|+..+...+..+..+ .+|.+++|+++ .++.++ |++|+|||+.++. .+..+..| ...+.
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--~~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH--KKKIS 129 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC--CCcEE
Confidence 5889999998877777777644 58999999874 344444 8999999997642 12233333 34567
Q ss_pred EEeeCCCccEE-EEcCCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672 140 AFSPSLNACFL-AVPASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 140 ~~~~~~~~~~l-a~~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
+++++|++..+ ++++ .|+.|+|||+.+++.. +...|.+++|+|+|++|++++.|++ |+|||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEe
Confidence 77778877654 5666 5999999999987643 2377999999999999999999997 6999999999988875
Q ss_pred cCCcce----eEEEEEeecCCCcccEEEEEeCCC----cEEEEecCCCcccCCCCcccccccccccccceeeccccccee
Q 019672 215 RGTYPS----TIFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV 286 (337)
Q Consensus 215 ~~~~~~----~i~~l~fs~dg~~~~~las~s~dg----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 286 (337)
. |... .+....|++++. +|++++.|+ +|+|||++....+... ......+......|..
T Consensus 207 g-H~g~~~s~~v~~~~fs~d~~---~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----~~ld~~~~~L~p~~D~----- 272 (568)
T PTZ00420 207 I-HDGGKNTKNIWIDGLGGDDN---YILSTGFSKNNMREMKLWDLKNTTSALVT-----MSIDNASAPLIPHYDE----- 272 (568)
T ss_pred c-ccCCceeEEEEeeeEcCCCC---EEEEEEcCCCCccEEEEEECCCCCCceEE-----EEecCCccceEEeeeC-----
Confidence 3 2221 234456789988 888888774 7999999864332210 0000000001112222
Q ss_pred eeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 287 LRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
..+..+++|+.|+.+++|++..+
T Consensus 273 --------~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 273 --------STGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred --------CCCCEEEEEECCCeEEEEEccCC
Confidence 12367889999999999999654
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.3e-23 Score=175.68 Aligned_cols=272 Identities=14% Similarity=0.196 Sum_probs=199.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE----Ee------eCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE----RA------VGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (337)
+.++.+.|..|+|||++|++|+.||+ .|||..+|++... .+ ...+.++.+.-++..++ +| +.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA--sG-----sq 283 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA--SG-----SQ 283 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh--cc-----Cc
Confidence 34667889999999999999999998 8999999976422 11 23344444444444443 44 36
Q ss_pred CceEEEEECCCCCEEEEEE--cCCceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 74 PRRLCLFNTTTGTALRELN--FLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~--~~~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
|++|++|.+++|.+++.+. |...|+++.|+.+.--+ ++ |.++++.-++.++.+++++.|.. .+.-..+.+++.
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS--yvn~a~ft~dG~ 361 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS--YVNEATFTDDGH 361 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc--cccceEEcCCCC
Confidence 9999999999999998876 45589999998765433 33 88999999999999999987755 344445567888
Q ss_pred EEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-
Q 019672 149 FLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP- 219 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~- 219 (337)
++++++ .||+|++|+.++..+..+ .+|+++-.-|. ...++.+....+ +.|-+++ |+.+..|..|...
T Consensus 362 ~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~q-GQvVrsfsSGkREg 437 (508)
T KOG0275|consen 362 HIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNMQ-GQVVRSFSSGKREG 437 (508)
T ss_pred eEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEecc-ceEEeeeccCCccC
Confidence 999988 499999999998877643 77888888774 446777776666 5688875 7888888655432
Q ss_pred eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCE
Q 019672 220 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS 299 (337)
Q Consensus 220 ~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 299 (337)
+..-+.+.||.|. ++.+.+.|+.++.|.+..++-.+. +|-....+... +-+|..+.
T Consensus 438 GdFi~~~lSpkGe---wiYcigED~vlYCF~~~sG~LE~t-----------l~VhEkdvIGl----------~HHPHqNl 493 (508)
T KOG0275|consen 438 GDFINAILSPKGE---WIYCIGEDGVLYCFSVLSGKLERT-----------LPVHEKDVIGL----------THHPHQNL 493 (508)
T ss_pred CceEEEEecCCCc---EEEEEccCcEEEEEEeecCceeee-----------eeccccccccc----------ccCcccch
Confidence 2355668999999 999999999999999887765432 22111111111 11344577
Q ss_pred EEEEEeCCcEEEEE
Q 019672 300 VSVITYNGYFVEYI 313 (337)
Q Consensus 300 l~~~~~dg~~~~~~ 313 (337)
|++-++||.++.|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 88889999998883
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=5.7e-22 Score=186.65 Aligned_cols=235 Identities=15% Similarity=0.182 Sum_probs=187.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+.+|.+.|++++|..-+.+|.+|+.| .++|||+.+++......++.-.+.++......+ ++| +.|++|++||
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~--~sg-----s~D~tVkVW~ 317 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLL--VSG-----SRDNTVKVWD 317 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceE--eec-----cCCceEEEEe
Confidence 45889999999999877788888855 579999999999988876665555554434333 333 3699999999
Q ss_pred CCCCCEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
+.++..+..+. +..+|.++.++.+.++.++ |++|++||+.+++.++.+..|. ..+.++..++. ..++.++ .|+
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~--~~V~sl~~~~~-~~~~Sgs--~D~ 392 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT--GRVYSLIVDSE-NRLLSGS--LDT 392 (537)
T ss_pred ccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc--ceEEEEEecCc-ceEEeee--ecc
Confidence 99999999988 7779999999987777776 8999999999999999998754 46777766553 5677666 589
Q ss_pred EEEEEEccCC-ccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 160 SVLVYNVMEL-HSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 160 ~v~i~d~~~~-~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
+|++||+.+. +..+. +-+..+. ..+++|++++.||+ |++||..+++++..+... +...|.++++. ..
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~- 465 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--KE- 465 (537)
T ss_pred ceEeecCCchhhhhhhhcCCcccccccc--cccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--cc-
Confidence 9999999999 66543 4454444 46789999999997 799999999999988543 34568888876 23
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccC
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
.+++++.||++++||++.....+
T Consensus 466 --~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 466 --EILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred --eEEEEecCCeeEEEecccCchhh
Confidence 79999999999999999877644
No 71
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.8e-21 Score=160.56 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=176.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC--cEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--RLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
.+|+..|++++|+|.|++||+|+-|.. .||.-..+ +.+..++ ...+.++++..+++++|+++. |+.|-
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-------DKSVW 130 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-------DKSVW 130 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-------CCeEE
Confidence 368889999999999999999998875 89976655 4444444 356788888889999999875 89999
Q ss_pred EEECCCCCEE---EEE-EcCCceeEEEEcC--CeEEEEE-CCeEEEEECC-CC--eeeeeecCCCCCceEEEEeeCCCcc
Q 019672 79 LFNTTTGTAL---REL-NFLTSILAVRLNK--KRLVIVL-REKTYIYDAN-TL--AILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 79 iwd~~~~~~~---~~~-~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
||....+... .-+ .|.+.|..+.|+| +.++.++ |++|++|.-. .. +.++++..+.+ .+.++.+++.+.
T Consensus 131 iWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 131 IWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGS 208 (312)
T ss_pred EEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCc
Confidence 9998755433 333 3556899999999 4555555 9999999765 22 56777776654 677888888888
Q ss_pred EEEEcCCCCccEEEEEEccCC-cccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc------eeEeeccCCccee
Q 019672 149 FLAVPASTTKGSVLVYNVMEL-HSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT------KSYSFRRGTYPST 221 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~-~~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~------~~~~~~~~~~~~~ 221 (337)
.|++++ .|++|+||...+. ...|..++..++|. + ..||+++.|+. |+||.-..+- ++... .+.|...
T Consensus 209 rl~s~s--dD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~-~~aHe~d 282 (312)
T KOG0645|consen 209 RLVSCS--DDGTVSIWRLYTDLSGMHSRALYDVPWD-N-GVIASGGGDDA-IRLFKESDSPDEPSWNLLAKK-EGAHEVD 282 (312)
T ss_pred eEEEec--CCcceEeeeeccCcchhcccceEeeeec-c-cceEeccCCCE-EEEEEecCCCCCchHHHHHhh-hcccccc
Confidence 999888 6999999996543 33455899999998 4 47999999997 7999765431 11111 2334557
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
|+++.|+|... +.|++|++||.|++|.+.
T Consensus 283 VNsV~w~p~~~--~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 283 VNSVQWNPKVS--NRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEEEcCCCC--CceeecCCCceEEEEEec
Confidence 99999999544 489999999999999875
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5e-22 Score=175.59 Aligned_cols=228 Identities=15% Similarity=0.214 Sum_probs=174.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE--EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
+..|+++.|-.||++||+|.+.| ++|||..+...+. ..+..++-.+.+.+..+.++..++ .|+.+++||+.
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s 141 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLS 141 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC------CCceEEEEEcC
Confidence 45789999999999999999888 5999965533322 223356666777766676655554 68999999999
Q ss_pred CCCEEEEEEcCC-ceeEEEEcCC--eEEEEE--CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 84 TGTALRELNFLT-SILAVRLNKK--RLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 84 ~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
+...+.++..+. .|.+.++++. ++++.+ |++|++||++.. ..+.++. ++.|.. .+.+-|.+..+|++|
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe--~vl~lpsgs~iasAg--- 215 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE--SVLALPSGSLIASAG--- 215 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee--eEEEcCCCCEEEEcC---
Confidence 887655665444 7999998763 455544 999999999877 5555664 333333 233335567999988
Q ss_pred ccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672 158 KGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 158 dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg 231 (337)
...|+|||+.++... |...|+|+++..+++.|.+||-||. +++||+.+-+.+..++ .+++|.+++.|||+
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAVSPDD 291 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEecCCC
Confidence 478999999966542 5589999999999999999999998 5999999989888875 36789999999999
Q ss_pred CcccEEEEEeCCCcEEEEecCC
Q 019672 232 QFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 232 ~~~~~las~s~dg~v~iw~l~~ 253 (337)
+ .++.|-.+|.+-+=+...
T Consensus 292 ~---t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 292 Q---TVVIGMSNGLVSIRRREV 310 (487)
T ss_pred c---eEEEecccceeeeehhhc
Confidence 9 999999999987765433
No 73
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=2.1e-21 Score=182.27 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=161.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEE---------------EEeeCCEEEEEEcc-CCCEEEEEeCCCCCC
Q 019672 9 PVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCY---------------ERAVGAFSIVEMLY-SSSLLAIVGAGEQPS 71 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 71 (337)
.|+....++|++.++++..+.+ ..|+...+..+. ..+.+.+..+.+.+ +.+.++.++
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS------ 95 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS------ 95 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe------
Confidence 4666677788777777766665 778765543322 11223455555554 445554443
Q ss_pred CCCceEEEEECCCCC-------EEEEEE-cCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672 72 LSPRRLCLFNTTTGT-------ALRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~-------~~~~~~-~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (337)
.|++|++||+.++. ++..+. |...|.++.|++. .++.++ |+.|+|||+.+++.+..+..+.. .+.
T Consensus 96 -~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~--~V~ 172 (493)
T PTZ00421 96 -EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD--QIT 172 (493)
T ss_pred -CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC--ceE
Confidence 59999999997652 344554 4458999999874 344444 89999999999988878765543 577
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----C-ceEEEEeCCCCCEEEEEe----CCCcEEEEEEcCCCce
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A-PLAAIVLSSNGMYIATAS----EQGTIIRVFLVSEATK 209 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~-~i~~~~~s~dg~~lat~s----~dg~~i~vwd~~~~~~ 209 (337)
++++++++.++++++ .|+.|++||+++++.... + .+..+.|.+++..|++++ .|+. |++||+++...
T Consensus 173 sla~spdG~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~ 249 (493)
T PTZ00421 173 SLEWNLDGSLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMAS 249 (493)
T ss_pred EEEEECCCCEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCC
Confidence 778888888999888 599999999998775432 2 345778999888887764 4676 69999987653
Q ss_pred eEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCc
Q 019672 210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI 255 (337)
Q Consensus 210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~ 255 (337)
............+....|++|++ +|++++ .|++|++||+..+.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~---~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTN---LLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCC---EEEEEEeCCCeEEEEEeeCCc
Confidence 32221222233466678999999 888877 59999999998654
No 74
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.3e-21 Score=164.08 Aligned_cols=235 Identities=15% Similarity=0.216 Sum_probs=172.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+++...|.++.|+|.++.|++++.|| +++|+.....+..... ++..++++.|....-+++++ .|+.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~------~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGG------LDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEec------cCceEEEEEe
Confidence 46788999999999988877777766 6999998876555443 33445555565555566665 5999999999
Q ss_pred CCCCEEEEEEcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 83 TTGTALRELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
.++....--.|..+|.+|...+ +.++.++ |++|++||.+.......+.. +..+.+++..++ .|+++. .+.
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---~kkVy~~~v~g~--~LvVg~--~~r 155 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---GKKVYCMDVSGN--RLVVGT--SDR 155 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc---CceEEEEeccCC--EEEEee--cCc
Confidence 9998777777888999999873 4444444 99999999997555555543 346888887665 444444 378
Q ss_pred EEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC----ceeEeeccCC----c---cee
Q 019672 160 SVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGT----Y---PST 221 (337)
Q Consensus 160 ~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~----~~~~~~~~~~----~---~~~ 221 (337)
.|.+||+++.....+ -.+.||++-|++.=.|.+|-||++ .+=.+... .+-+.|+-+- . --+
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 899999998876542 679999999998889999999984 45333333 2223332110 0 125
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
|++|+|+|--+ .||||+.||.|.+||+...+.
T Consensus 235 VNai~Fhp~~~---tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 235 VNAIAFHPIHG---TFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred eceeEeccccc---eEEecCCCceEEEccCcchhh
Confidence 99999999977 999999999999999876554
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=4.4e-23 Score=175.39 Aligned_cols=230 Identities=11% Similarity=0.202 Sum_probs=174.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+.+|.+.|.|+.|... .+++|+.|. ++|||.++++.+...-+|-..++.+.++.++++.++ .|+++++||
T Consensus 233 L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcS-------kDrsiaVWd 303 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCS-------KDRSIAVWD 303 (499)
T ss_pred hhcCCCcEEeeeccce--EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEec-------CCceeEEEe
Confidence 4578999999998655 788888876 699999999987665445555666677788877765 499999999
Q ss_pred CCCCCEEEE----EEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 82 TTTGTALRE----LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 82 ~~~~~~~~~----~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
+.....+.- ..|-..|..+.|+.++++.++ |.+|++|++.+.+.++++..| ..++.|+... +.++++++
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH--kRGIAClQYr--~rlvVSGS-- 377 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQYR--DRLVVSGS-- 377 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc--cccceehhcc--CeEEEecC--
Confidence 986553211 234457888999988877776 889999999999999888654 4577776654 34666555
Q ss_pred CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe-------eccCCcceeEEE
Q 019672 157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS-------FRRGTYPSTIFS 224 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~-------~~~~~~~~~i~~ 224 (337)
.|.+|++||+..+..+ |+.-|.|+.|+ .+.|++|+.||+ |||||+..+..... ...-.+.+.|..
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 5999999999998764 45779999995 578999999998 79999987754311 111123457999
Q ss_pred EEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+.|. .. .+++++.|.+|-|||...+.
T Consensus 455 LQFD--~f---qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 455 LQFD--EF---QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred Eeec--ce---EEEeccCCCeEEEEEcCCCC
Confidence 9995 33 69999999999999986543
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=5.8e-23 Score=167.64 Aligned_cols=192 Identities=18% Similarity=0.257 Sum_probs=151.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcE---EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRL---CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
.|+--|..++|++|..+|++|+...+ ||||++.-+- .+..+.+++.-+.++...+.++.. . .|++||+|
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS-a------dd~tVRLW 170 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS-A------DDKTVRLW 170 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee-c------cCCceEEE
Confidence 35667999999999999999998875 9999865432 123334566666666555554433 3 59999999
Q ss_pred ECCCCCEEEEEEcCCceeEEEEcCCeEE--EEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 81 NTTTGTALRELNFLTSILAVRLNKKRLV--IVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~--v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
|.++++.+.++.++++|.++.+++++-+ ++..+.|.+||..+..+++.++.+.+ +.+-+.+|+...++++| +|
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n---V~SASL~P~k~~fVaGg--ed 245 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN---VESASLHPKKEFFVAGG--ED 245 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc---cccccccCCCceEEecC--cc
Confidence 9999999999999999999998766533 34467999999999999988876544 55666677776777666 69
Q ss_pred cEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672 159 GSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 209 (337)
Q Consensus 159 g~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~ 209 (337)
..++.||..++... |.+||.|+.|+|||..-|+||+||+ ||||.+..++.
T Consensus 246 ~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~ 301 (334)
T KOG0278|consen 246 FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKT 301 (334)
T ss_pred eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCc
Confidence 99999999987643 3499999999999999999999998 69999876654
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-20 Score=150.56 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=191.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEe------CCCCc--------EEEE---EeeCCEEEEEEccCCCEEEEEeCCC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFD------SSTGR--------LCYE---RAVGAFSIVEMLYSSSLLAIVGAGE 68 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~------~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~ 68 (337)
...|++++|+|.|.+.|+|++.. ++|-- +..+. .+.. .+.+.+.++++.+.+.+++..+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs--- 108 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS--- 108 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC---
Confidence 35699999999999999999854 56652 21111 1111 1235677777777777766544
Q ss_pred CCCCCCceEEEEECCCCCE--E---EEEE-cCCceeEEEEcC-----CeEEEEE---CCeEEEEECCCCeeeeeecCCCC
Q 019672 69 QPSLSPRRLCLFNTTTGTA--L---RELN-FLTSILAVRLNK-----KRLVIVL---REKTYIYDANTLAILDTIDTVPN 134 (337)
Q Consensus 69 ~~~~~d~~v~iwd~~~~~~--~---~~~~-~~~~v~~i~~~~-----~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~ 134 (337)
.|++|++.-+....+ . .++. +.+.|.+++|-. ..+++.. |-+|++-|-..++.++.+..+..
T Consensus 109 ----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 109 ----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred ----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 499999976543222 1 2333 456899998832 2233322 66888889999988888876543
Q ss_pred CceEEEE-eeCCCccEEEEcCCCCccEEEEEEccCCccccc------------CceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672 135 LKGLCAF-SPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------------APLAAIVLSSNGMYIATASEQGTIIRV 201 (337)
Q Consensus 135 ~~~~~~~-~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------------~~i~~~~~s~dg~~lat~s~dg~~i~v 201 (337)
-++++ +++ +.++++++ .|.+|++||++-...+.. +.|.++++.|.|++||+|-.|... -+
T Consensus 185 --hilalyswn--~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc-~l 257 (350)
T KOG0641|consen 185 --HILALYSWN--GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC-ML 257 (350)
T ss_pred --cEEEEEEec--CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce-EE
Confidence 24433 443 44566554 699999999986554321 789999999999999999999986 59
Q ss_pred EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccc
Q 019672 202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP 281 (337)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 281 (337)
||++.++.++.|. .|.+.|.|+.|||... ||+++|.|..|++-|++..-... -+.-.++..-.+...+.|.+
T Consensus 258 ydirg~r~iq~f~--phsadir~vrfsp~a~---yllt~syd~~ikltdlqgdla~e---l~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 258 YDIRGGRMIQRFH--PHSADIRCVRFSPGAH---YLLTCSYDMKIKLTDLQGDLAHE---LPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred EEeeCCceeeeeC--CCccceeEEEeCCCce---EEEEecccceEEEeecccchhhc---CceEEEEeccCceEEEEecC
Confidence 9999999999885 3567899999999998 99999999999999997643221 12222333334556677877
Q ss_pred ccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 282 ADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
.. -..++.+.|.+...|.+.
T Consensus 330 ~d--------------~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QD--------------FSFISSSADKTATLWALN 349 (350)
T ss_pred cc--------------ceeeeccCcceEEEeccC
Confidence 65 357788889999888764
No 78
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=3.9e-21 Score=181.72 Aligned_cols=221 Identities=11% Similarity=0.095 Sum_probs=156.0
Q ss_pred CCCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCCCcE--------E--EEEeeCCEEEEEEccCCCEEEEEeCCCCC
Q 019672 3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRL--------C--YERAVGAFSIVEMLYSSSLLAIVGAGEQP 70 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 70 (337)
..+|..+|++++|+|+ +.+||+|+.|+ ++|||+.++.. + +..+...+..+.+.+....++++++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS---- 145 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG---- 145 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe----
Confidence 3468899999999997 78999999887 59999875421 1 1222344566666655554443443
Q ss_pred CCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEE---eeC
Q 019672 71 SLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAF---SPS 144 (337)
Q Consensus 71 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 144 (337)
.|++|+|||+++++.+..+.++..|.+++|++++-.++ . |+.|+|||+++++.+.++..|.+.....++ .++
T Consensus 146 --~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 146 --FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred --CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 59999999999999888888778899999987654433 3 889999999999988888766554332222 234
Q ss_pred CCccEEEEcCCC--CccEEEEEEccCCc-cccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672 145 LNACFLAVPAST--TKGSVLVYNVMELH-SHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 145 ~~~~~la~~~~~--~dg~v~i~d~~~~~-~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
+++.+++++|.+ .+++|+|||+++.. .++. +.+......++|.++++|+.|++ ||+|++..+. +..+.
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKVN 301 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEeec
Confidence 677788887741 12489999998633 2221 33333444567999999999997 7999998764 44454
Q ss_pred cCCcceeEEEEEeecCC
Q 019672 215 RGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 215 ~~~~~~~i~~l~fs~dg 231 (337)
...+..++.+++|.|+.
T Consensus 302 ~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccccCCCccceEEcccc
Confidence 44445678899999975
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-21 Score=164.21 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=170.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
+..+.+||+++.|+.||+.+++|+.|+ +++||+.+++... ..+..++..+.+....++-.+++| +.|++|+.|
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-----SWDKTlKfW 142 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG-----SWDKTLKFW 142 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec-----ccccceeec
Confidence 457899999999999999987776655 6999999997643 344577888888777776677777 589999999
Q ss_pred ECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
|++...++.++..++.+.++.+-...++|++ ++.|.+|+|+++.. .+.+..+-+ ..+-+++...++...|.++ .+
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-~Q~R~va~f~d~~~~alGs--iE 219 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK-WQTRCVACFQDKDGFALGS--IE 219 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc-ceeeEEEEEecCCceEeee--ec
Confidence 9999999999999999999998877788877 88999999976632 223332221 1222333333444446655 58
Q ss_pred cEEEEEEccCCccc-------cc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 159 GSVLVYNVMELHSH-------CE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 159 g~v~i~d~~~~~~~-------~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
|.+.|..+..+... |+ .+|++|+|+|.-..|||++.||+ +..||-+...++++.. .+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~--~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSE--THPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccC--cCCCcc
Confidence 99999877654211 11 46899999999899999999998 5899998888877654 346789
Q ss_pred EEEEeecCCCcccEEEEE
Q 019672 223 FSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~ 240 (337)
++.+|+.+|. ++|-+
T Consensus 297 tcc~fn~~G~---ifaYA 311 (347)
T KOG0647|consen 297 TCCSFNRNGS---IFAYA 311 (347)
T ss_pred ceeEecCCCC---EEEEE
Confidence 9999999999 66654
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=1.3e-21 Score=168.02 Aligned_cols=267 Identities=16% Similarity=0.099 Sum_probs=176.9
Q ss_pred eEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEE-EccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672 10 VFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVE-MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~ 85 (337)
|.++... ++.+.+|+.||. ++|+.. |+......+ +.+..+. +..+..-..+++++ .|.++++|.++.+
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-----~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-----MDQTLRLWKWNVG 179 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEec-----CCceEEEEEecCc
Confidence 4455544 678999999996 999976 555444433 3444232 22222222344442 6999999998877
Q ss_pred CEEEE-----EEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCC-------------------------eeeeeecCC
Q 019672 86 TALRE-----LNFLTSILAVRLNKKRLVIVL---REKTYIYDANTL-------------------------AILDTIDTV 132 (337)
Q Consensus 86 ~~~~~-----~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~-------------------------~~~~~~~~~ 132 (337)
+...+ -.|...|-+|...++...+++ |.++.||+.... .++.++..|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 64422 145568999998776655544 999999993211 112222322
Q ss_pred CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~ 208 (337)
...+.++-+++ ...+.+++ .|.+|+.||+.++....+ .+++|+.++|..++||+||.|.. ||+||-+++.
T Consensus 260 --t~~Vs~V~w~d-~~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~~ 333 (423)
T KOG0313|consen 260 --TEPVSSVVWSD-ATVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH-IRLWDPRTGD 333 (423)
T ss_pred --ccceeeEEEcC-CCceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc-eeecCCCCCC
Confidence 23455555554 34555555 799999999999876543 88999999999999999999986 7999998764
Q ss_pred --e-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccce
Q 019672 209 --K-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH 285 (337)
Q Consensus 209 --~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 285 (337)
. .+.| .+ |..-|.++.|+|...+ +|+++|.|+++++||++..+.+- ....++.
T Consensus 334 gs~v~~s~-~g-H~nwVssvkwsp~~~~--~~~S~S~D~t~klWDvRS~k~pl--------------------ydI~~h~ 389 (423)
T KOG0313|consen 334 GSVVSQSL-IG-HKNWVSSVKWSPTNEF--QLVSGSYDNTVKLWDVRSTKAPL--------------------YDIAGHN 389 (423)
T ss_pred CceeEEee-ec-chhhhhheecCCCCce--EEEEEecCCeEEEEEeccCCCcc--------------------eeeccCC
Confidence 2 2333 23 4557999999999985 89999999999999998765321 1111111
Q ss_pred eeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 286 VLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
..+..+.+ .++..|++|+.|.+++||.-.
T Consensus 390 DKvl~vdW-~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 390 DKVLSVDW-NEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEec-cCCceEEeccCcceEEEeccc
Confidence 11111111 233689999999999999654
No 81
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=4.6e-21 Score=180.01 Aligned_cols=235 Identities=13% Similarity=0.173 Sum_probs=161.4
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCc-------EEEEEee--CCEEEEEEccCC-CEEEEEeCCCCCC
Q 019672 4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGR-------LCYERAV--GAFSIVEMLYSS-SLLAIVGAGEQPS 71 (337)
Q Consensus 4 ~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~-------~~~~~~~--~~~~~~~~~~~~-~~~~~~~~g~~~~ 71 (337)
.+|.++|++++|+| ++.+|++|+.|+ +++||+.++. .+..... ..+..+.+.+.. +.++..+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs------ 145 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG------ 145 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe------
Confidence 36788999999999 889999999887 5999987652 2333333 345556665544 3444333
Q ss_pred CCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672 72 LSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
.|++|+|||+++++.+..+. +...|.++.|++++-.+ +. |++|++||+++++.+..+..+.+.... ...+.+++
T Consensus 146 -~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~ 223 (493)
T PTZ00421 146 -ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRK 223 (493)
T ss_pred -CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce-EEEEcCCC
Confidence 59999999999999888876 44589999998775433 33 889999999999888887665443221 22334454
Q ss_pred cEEEEcCC--CCccEEEEEEccCCccc-c-----c-CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeeccCC
Q 019672 148 CFLAVPAS--TTKGSVLVYNVMELHSH-C-----E-APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGT 217 (337)
Q Consensus 148 ~~la~~~~--~~dg~v~i~d~~~~~~~-~-----~-~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~~~~ 217 (337)
..+++.|. ..|++|++||+++.... . . ..+....|++++++|++|+ .||+ ||+||+.+++.+......
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~- 301 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS- 301 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc-
Confidence 56665442 14799999999875422 1 1 4566778999999999887 4887 799999999877655322
Q ss_pred cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
...++..++|.|.-. +-...--..++|.+..
T Consensus 302 s~~~~~g~~~~pk~~-----~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 302 SVEPHKGLCMMPKWS-----LDTRKCEIARFYALTY 332 (493)
T ss_pred CCCCCcceEeccccc-----ccccceeeeEEEEecC
Confidence 234577888888532 1111112347777753
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.6e-21 Score=186.90 Aligned_cols=239 Identities=15% Similarity=0.161 Sum_probs=177.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCC----------C--------cEEEEEeeCCEEEEEEccCCCEEEEEe
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSST----------G--------RLCYERAVGAFSIVEMLYSSSLLAIVG 65 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (337)
.|.+.|+|+.|+|||++||+|++|.+ .||.... | +.......|...+..+.|+++...+++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 57889999999999999999999996 8998662 0 122223334444445555544444444
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCC----Cce
Q 019672 66 AGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPN----LKG 137 (337)
Q Consensus 66 ~g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~----~~~ 137 (337)
.+ .|++|.|||.++.+.+..+.. .+.|..+.|+|-+-++++ |++|+||++.+-...+.+..+.+ ...
T Consensus 147 ~s-----~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 147 VS-----LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred ec-----ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 43 599999999999988887764 458999999987766665 78999999887777777654432 233
Q ss_pred EEEEeeCCCccEEEEcCCCC--ccEEEEEEccCCc-----ccccCceEEEEeCCC-----CC------------EEEEEe
Q 019672 138 LCAFSPSLNACFLAVPASTT--KGSVLVYNVMELH-----SHCEAPLAAIVLSSN-----GM------------YIATAS 193 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~~~~~--dg~v~i~d~~~~~-----~~~~~~i~~~~~s~d-----g~------------~lat~s 193 (337)
..-++++||+++|+++.+.. -..+.|.+-.+.+ ..|.+++.+++|+|- .+ .+|+||
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 45778899999999875321 3457776554433 346799999999981 12 688999
Q ss_pred CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 194 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 194 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.|++ |-||.....+.+.... ......|..|+|||||- .|.++|.||+|.++..+.
T Consensus 302 qDrS-lSVW~T~~~RPl~vi~-~lf~~SI~DmsWspdG~---~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 302 QDRS-LSVWNTALPRPLFVIH-NLFNKSIVDMSWSPDGF---SLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCcc-EEEEecCCCCchhhhh-hhhcCceeeeeEcCCCC---eEEEEecCCeEEEEEcch
Confidence 9998 5899998877765542 22345699999999999 999999999999999865
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.6e-20 Score=154.30 Aligned_cols=230 Identities=16% Similarity=0.252 Sum_probs=183.0
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEc-CCceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDN-SGFALST-KDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg-~~la~g~-~~g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
++.+.|-.+.|+|.. .+|++++ ++.+++||...++.+..... ++-..+.+.++.+.++.+. .|..|.+.|
T Consensus 62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-------kdD~it~id 134 (313)
T KOG1407|consen 62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-------KDDRITFID 134 (313)
T ss_pred CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-------CcccEEEEE
Confidence 566678888888755 4566554 55689999999988776543 3444556777777776654 488999999
Q ss_pred CCCCCEEEEEEcCCceeEEEEc-CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 82 TTTGTALRELNFLTSILAVRLN-KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
.++.+...+.++.-.+..+.|+ ++.+++.+ -|.|.|......+++..+..|+ .+..|+.++|++.++|+++ .|
T Consensus 135 ~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~Gs--AD 210 (313)
T KOG1407|consen 135 ARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGS--AD 210 (313)
T ss_pred ecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeecc--cc
Confidence 9999999888888888888875 44555555 4799999999999999987654 5778999999999999998 48
Q ss_pred cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
-.+.+||+...-.. +.-||..+.||.||++||+||+|. .|-|-++++|..+.++. ..++.+.|+|+|...
T Consensus 211 AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh-~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~- 285 (313)
T KOG1407|consen 211 ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH-FIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRP- 285 (313)
T ss_pred ceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc-eEEeEecccCCeEEEee---ccCCceeEEecCCCc-
Confidence 99999999876543 238999999999999999999997 47999999999998884 356789999999998
Q ss_pred ccEEEEEeCC---------CcEEEEecC
Q 019672 234 QDILVATSSS---------GSLHVFSPG 252 (337)
Q Consensus 234 ~~~las~s~d---------g~v~iw~l~ 252 (337)
+||-+.+| |+|+||-+.
T Consensus 286 --LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 --LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred --eeeEEecCCCCccccccceeEEecCC
Confidence 88887766 567776553
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.2e-20 Score=156.35 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=166.1
Q ss_pred CCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCC-CcEEEE---EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672 4 QSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSST-GRLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (337)
Q Consensus 4 ~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v 77 (337)
+++...|.+++|||. ..++++|+-|+ +|+|+++. +...-. ...+++..+++.-+++.++..+ .|+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------~Dk~~ 96 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------CDKQA 96 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------cCCce
Confidence 467788999999994 45566777665 79999876 333221 1235677777777776655443 59999
Q ss_pred EEEECCCCCEEEEEEcCCceeEEEEcCCeE--EEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 78 CLFNTTTGTALRELNFLTSILAVRLNKKRL--VIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
++||+.+++...--.|..+|..+.|-+... +++ + |.+|+.||.+...++.++..+ ..+++...-.+ ++++
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---eRvYa~Dv~~p--m~vV 171 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---ERVYAADVLYP--MAVV 171 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---ceeeehhccCc--eeEE
Confidence 999999998766667778999999855443 333 3 999999999999888888764 34555554322 4444
Q ss_pred cCCCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC--ceeEeeccCC------
Q 019672 153 PASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA--TKSYSFRRGT------ 217 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~--~~~~~~~~~~------ 217 (337)
+- .+..|.+|+++++.... +..++||+.-+|....|.||-+|++ -|..+..+ +.-..|+-+.
T Consensus 172 at--a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv-~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 172 AT--AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV-AIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred Ee--cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE-EEEecCCCCccCceeEEEeccCCCCC
Confidence 43 36789999997654322 1668999999998888999999985 78888876 3223332111
Q ss_pred c-ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 218 Y-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 218 ~-~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
. --.|++|+|+|.-. .|++.+.||+..+||-+
T Consensus 249 ~~VYaVNsi~FhP~hg---tlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHG---TLVTAGSDGTFSFWDKD 281 (347)
T ss_pred CceEEecceEeecccc---eEEEecCCceEEEecch
Confidence 0 12488999999877 99999999999999954
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=6.8e-21 Score=159.82 Aligned_cols=223 Identities=16% Similarity=0.174 Sum_probs=163.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
-++.||++++|.++.+ +++|+-+| ++++|+.++....- .+..++.+++..+-.+.++ +|+ +|++|++||.
T Consensus 52 ~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI--sgs-----WD~~ik~wD~ 123 (323)
T KOG1036|consen 52 KHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI--SGS-----WDKTIKFWDP 123 (323)
T ss_pred ecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE--Ecc-----cCccEEEEec
Confidence 3678999999999765 55555555 69999998865433 3345667776665555543 342 7999999999
Q ss_pred CCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672 83 TTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
+.......+.....|.++....+.++|++ +..+.+||+++.....+.+...-...+-+++..|++.-.++++ .||.|
T Consensus 124 R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS--ieGRV 201 (323)
T KOG1036|consen 124 RNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS--IEGRV 201 (323)
T ss_pred cccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe--ecceE
Confidence 98777777877789999999999999976 8899999999886655443322222233444444444445554 58998
Q ss_pred EEEEccCCccc---------cc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672 162 LVYNVMELHSH---------CE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 223 (337)
Q Consensus 162 ~i~d~~~~~~~---------~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 223 (337)
.+=.+...... |. .||++++|+|--..||||+.||. |.+||+.+.+.+.+|.+- +..|-
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~~--~~SI~ 278 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAKY--ETSIS 278 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccCC--CCceE
Confidence 88555443111 11 78999999999889999999996 579999999998888532 45699
Q ss_pred EEEeecCCCcccEEEEEeCC
Q 019672 224 SLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~d 243 (337)
+++|+.||. .||.++.-
T Consensus 279 slsfs~dG~---~LAia~sy 295 (323)
T KOG1036|consen 279 SLSFSMDGS---LLAIASSY 295 (323)
T ss_pred EEEeccCCC---eEEEEech
Confidence 999999999 99998763
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.7e-21 Score=155.60 Aligned_cols=270 Identities=12% Similarity=0.147 Sum_probs=175.0
Q ss_pred CeEEEEEcC--CCCE-EEEEcCCc------eEEEeCCCCcEEE---EEe-eCCEEEEEEccCC-CEEEEEeCCCCCCCCC
Q 019672 9 PVFFVSFNQ--DNSG-FALSTKDG------FKIFDSSTGRLCY---ERA-VGAFSIVEMLYSS-SLLAIVGAGEQPSLSP 74 (337)
Q Consensus 9 ~v~~~~fs~--dg~~-la~g~~~g------~~vw~~~~~~~~~---~~~-~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d 74 (337)
.=++++||| ++++ +|++..-| +.|-++...+-+. ... ..+..-+++..+. +.++.++| |
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G-------D 82 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG-------D 82 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec-------C
Confidence 346889998 4443 33333322 3455664222221 221 1334445555544 34444444 9
Q ss_pred ceEEEEECCC-CCEEEEEE-cCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 75 RRLCLFNTTT-GTALRELN-FLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 75 ~~v~iwd~~~-~~~~~~~~-~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
|+++|||+.. ..++..++ |..+|.++.++. +.+++.+ |++|++|+..-++.+.++..+.+...-..++|+.. .
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-n 161 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP-N 161 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC-C
Confidence 9999999643 34555553 556899999864 2334444 99999999988888999887655444445555433 3
Q ss_pred EEEEcCCCCccEEEEEEccCCc-----ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCc-eeEeeccCCccee
Q 019672 149 FLAVPASTTKGSVLVYNVMELH-----SHCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPST 221 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~-----~~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~ 221 (337)
++++++ .||++++||++..- ..|...|.|+.|+. +.+.||||+.|+. ||+||+++-+ .+.++. .|.-.
T Consensus 162 lfas~S--gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~--gh~~A 236 (311)
T KOG0277|consen 162 LFASAS--GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELN--GHGLA 236 (311)
T ss_pred eEEEcc--CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeec--CCceE
Confidence 667776 49999999987542 23557899999997 6678999999986 7999998754 455552 34567
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC-CCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR-GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 300 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l 300 (337)
|..|.|||... +.||++|-|-|++|||...+..... ..+.+.|. +.--|++- +..++
T Consensus 237 VRkvk~Sph~~--~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv-------~g~Dws~~-------------~~~~v 294 (311)
T KOG0277|consen 237 VRKVKFSPHHA--SLLASASYDMTVRIWDPERQDSAIETVDHHTEFV-------CGLDWSLF-------------DPGQV 294 (311)
T ss_pred EEEEecCcchh--hHhhhccccceEEecccccchhhhhhhhccceEE-------eccccccc-------------cCcee
Confidence 99999999877 5999999999999999875432111 00111111 11123321 23567
Q ss_pred EEEEeCCcEEEEE
Q 019672 301 SVITYNGYFVEYI 313 (337)
Q Consensus 301 ~~~~~dg~~~~~~ 313 (337)
+..+=|+.+++|+
T Consensus 295 As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 295 ASTGWDELLYVWN 307 (311)
T ss_pred eecccccceeeec
Confidence 7777799999996
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1e-20 Score=166.30 Aligned_cols=236 Identities=16% Similarity=0.214 Sum_probs=177.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEE-E--EE-----------------eeCCEEEEEEccCCCEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-Y--ER-----------------AVGAFSIVEMLYSSSLLAI 63 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~-~--~~-----------------~~~~~~~~~~~~~~~~~~~ 63 (337)
.|.-+|+|+.++||+++...++.++ +.-|++.+++.. + .. +...+..+++..++.++++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4567899999999999988888877 488998888633 1 11 1122334555556666655
Q ss_pred EeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEc--CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672 64 VGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLN--KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (337)
Q Consensus 64 ~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~--~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (337)
.+ .|+.|.|||.++.+.+..+..+ ..|.++.|- .+.++.+. |.++++|++.....+.++..| +.++.
T Consensus 220 gg-------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH--qd~v~ 290 (479)
T KOG0299|consen 220 GG-------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH--QDGVL 290 (479)
T ss_pred cC-------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC--cccee
Confidence 44 4899999999999999887655 489888883 44555555 999999999988777777655 44677
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 215 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~ 215 (337)
++..-.....+.+++ .|.++++|++.....+ +.+.+-|++|-.+ ..+++||.+|. |.+|++.+.+.+...+.
T Consensus 291 ~IdaL~reR~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 291 GIDALSRERCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSRL 366 (479)
T ss_pred eechhcccceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEeec
Confidence 777655555555555 4999999999654332 3378999999766 57899999998 68999999998887654
Q ss_pred CCcc--e--------eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 216 GTYP--S--------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 216 ~~~~--~--------~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.|.. . -|++|+..|... ++|+||.+|.|++|.+..+..
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEecCCcc
Confidence 4321 1 388999999887 999999999999999987643
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=164.91 Aligned_cols=242 Identities=12% Similarity=0.116 Sum_probs=187.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE---------cCCceeEEEEcCCeEEEEE---CCe
Q 019672 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN---------FLTSILAVRLNKKRLVIVL---REK 114 (337)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~i~~~~~~~~v~~---d~~ 114 (337)
..+.+..+.+++++++..+ -|+-|.+||..+|+....+. +..+|.++.|+.+.-++++ ||+
T Consensus 214 Sh~EcA~FSPDgqyLvsgS-------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGS-------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred cchhheeeCCCCceEeecc-------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 3455666777777765443 59999999999998655432 3568999999988766655 999
Q ss_pred EEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEE
Q 019672 115 TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYI 189 (337)
Q Consensus 115 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~l 189 (337)
|++|.+.+++.++.++. .+..++++++++.|+..+.+++ .|.+++|.-+++++.+. .+.|+...|.+||..+
T Consensus 287 IKvWri~tG~ClRrFdr-AHtkGvt~l~FSrD~SqiLS~s--fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDR-AHTKGVTCLSFSRDNSQILSAS--FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEEEEEecchHHHHhhh-hhccCeeEEEEccCcchhhccc--ccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence 99999999999999863 4567899999999999999888 49999999999998764 4889999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc
Q 019672 190 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS 269 (337)
Q Consensus 190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~ 269 (337)
+++|.||+ |+||+.++++++.+|+......+|+++-.-|.+. +.++++...++|.|-++..+.-+. +.+
T Consensus 364 isaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp--eh~iVCNrsntv~imn~qGQvVrs-------fsS- 432 (508)
T KOG0275|consen 364 ISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP--EHFIVCNRSNTVYIMNMQGQVVRS-------FSS- 432 (508)
T ss_pred EEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCC--ceEEEEcCCCeEEEEeccceEEee-------ecc-
Confidence 99999998 6999999999999998776667899998888876 689999999999999987543211 000
Q ss_pred cccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 270 ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 270 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
.+. .++..+.. ...|+++-++++++|+.++.|+.-.-+-+
T Consensus 433 --GkR-------EgGdFi~~--~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 433 --GKR-------EGGDFINA--ILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred --CCc-------cCCceEEE--EecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 000 00000001 12556789999999999999987554433
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.5e-19 Score=145.75 Aligned_cols=237 Identities=12% Similarity=0.147 Sum_probs=171.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEE--eCCCCc-----EEEEEeeCCEEEEEEccCC--CEEEEEeCCCCCCCCC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIF--DSSTGR-----LCYERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSP 74 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw--~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d 74 (337)
-+++.|+|.+|+|+|+++|+|+++. +++. |.++.. +.+..+.+.+.-+++.-++ ...++.++| ..|
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g----agd 162 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG----AGD 162 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC----CCc
Confidence 3678899999999999999999986 4554 544432 3344444555555554333 333344443 248
Q ss_pred ceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCC-----CceEEEEeeCCC
Q 019672 75 RRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSLN 146 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 146 (337)
.+|.+-|..+|+....+..+ +.|.++.--.+-+++.+ |.+|++||++-...++++....+ ...+.+++.+|.
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 89999999999998888755 47887754333344433 88999999998877777754332 244678888899
Q ss_pred ccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee---ccCCc
Q 019672 147 ACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF---RRGTY 218 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~---~~~~~ 218 (337)
+.+|+++- .|....+||++.++.++ ...|.|+.|||...++.|+|.|-. ||+=|++. .+.+++ -.+.|
T Consensus 243 grll~sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqg-dla~el~~~vv~eh 318 (350)
T KOG0641|consen 243 GRLLASGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQG-DLAHELPIMVVAEH 318 (350)
T ss_pred cceeeecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeeccc-chhhcCceEEEEec
Confidence 98998876 68999999999888764 388999999999999999999986 79999873 222222 12233
Q ss_pred ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
...+-.+.|+|..- -+++.|.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~---sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDF---SFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccc---eeeeccCcceEEEeccC
Confidence 44555679999887 78899999999999764
No 90
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.4e-20 Score=172.00 Aligned_cols=234 Identities=11% Similarity=0.136 Sum_probs=179.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC-cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
.|..+.+.+.|.|+|+.+.+++.++ +++|+...- +.--.....+..+..+...++.++..+ .+++|.+|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s-------~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGS-------EQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEee-------ccceEEEeeC
Confidence 4677899999999999998888877 599986544 211111113445556666677655544 4899999998
Q ss_pred CCCCEEEEE-EcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 83 TTGTALREL-NFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 83 ~~~~~~~~~-~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
..++.-.-+ .+.-++..++++.+ .++.++ |-.|++-++.+......++.+.. .+.+++.+|++.+||+... |
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvss~--d 159 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVSSC--D 159 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEEec--C
Confidence 777643221 23346666667665 444445 55899999988877777776544 5788999999999999884 9
Q ss_pred cEEEEEEccCCccccc-------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672 159 GSVLVYNVMELHSHCE-------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 225 (337)
Q Consensus 159 g~v~i~d~~~~~~~~~-------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l 225 (337)
|.|++||++++...++ ..+..++|+|+|..+|..+.|+. |++++..+.+..+.++..++.+.+.++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEEE
Confidence 9999999998776532 56788999999777888888887 689999999999999776666669999
Q ss_pred EeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 226 SFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 226 ~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.|||+|+ |||+++.||.|-|||+++
T Consensus 239 ~wsPnG~---YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGK---YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCCc---EEeeeccCCcEEEEeccc
Confidence 9999999 999999999999999987
No 91
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=9.1e-21 Score=168.20 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=194.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc---EEEE---Eee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYE---RAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~---~~~~---~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v 77 (337)
+|.+-|..+.++...+++.+|+..+++|||+..-. .+.. .+. .-+..+.+..+++.++ ++| .-.+|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLi-vGG------eastl 489 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLI-VGG------EASTL 489 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEE-ecc------cccee
Confidence 46667888999999999999999999999975321 1111 111 2234445555565554 444 36799
Q ss_pred EEEECCCCCEEEE--EEcCC-ceeEEEEcCCeEE---EEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 78 CLFNTTTGTALRE--LNFLT-SILAVRLNKKRLV---IVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 78 ~iwd~~~~~~~~~--~~~~~-~v~~i~~~~~~~~---v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
.|||+....+... +.... ...+++.+++..+ +++||.|.|||+.+..+++++..+.+ +..|+..++++..|-
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD--GascIdis~dGtklW 567 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISKDGTKLW 567 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC--CceeEEecCCCceee
Confidence 9999987654433 33222 4566777777533 34599999999999999999987654 677788888888999
Q ss_pred EcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 152 VPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 152 ~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
++| -|++|+-||++.++.+.+ +.|.++...|++.+||.|-+.+. +.|-.....++ +.+ +.|..-|.+|.|
T Consensus 568 TGG--lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~k-yql--hlheScVLSlKF 641 (705)
T KOG0639|consen 568 TGG--LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEK-YQL--HLHESCVLSLKF 641 (705)
T ss_pred cCC--CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCccc-eee--cccccEEEEEEe
Confidence 998 599999999999887654 88999999999999999999987 46766654443 333 445677999999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672 228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG 307 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg 307 (337)
++-|+ ++++.+.|+.+..|....+...-..++.+ . +- .+....++++|++|+.|.
T Consensus 642 a~cGk---wfvStGkDnlLnawrtPyGasiFqskE~S--------s----Vl----------sCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 642 AYCGK---WFVSTGKDNLLNAWRTPYGASIFQSKESS--------S----VL----------SCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cccCc---eeeecCchhhhhhccCccccceeeccccC--------c----ce----------eeeeccCceEEEecCCCc
Confidence 99999 99999999999999876554311100000 0 11 111244568999999999
Q ss_pred cEEEEEE
Q 019672 308 YFVEYIF 314 (337)
Q Consensus 308 ~~~~~~~ 314 (337)
+-.+|.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 9888876
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=164.97 Aligned_cols=233 Identities=15% Similarity=0.234 Sum_probs=182.0
Q ss_pred CCCeEEEEEcCCCC-EEEEEcCCce-EEEeCCCCcEEE-----EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 7 SYPVFFVSFNQDNS-GFALSTKDGF-KIFDSSTGRLCY-----ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 7 ~~~v~~~~fs~dg~-~la~g~~~g~-~vw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
+.||.++.|.|+|+ .+++++...+ ..||+++.++.. ......+...+++++++++++.|. .+.|.|
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-------~G~I~l 329 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-------NGHIHL 329 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-------CceEEe
Confidence 56899999999998 6777777765 999999886532 222345566788899999988875 689999
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
....+++.+.+++.++.|.++.|+.+. ++++. +|.|.+||++....++.+..... ..-..++.+.++.++|+++
T Consensus 330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS-- 406 (514)
T KOG2055|consen 330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGS-- 406 (514)
T ss_pred ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEecc--
Confidence 999999999999999999999996543 33333 88999999999988888864333 2334666667778999987
Q ss_pred CccEEEEEEccCCc------ccc-----cCceEEEEeCCCCCEEEEEeC--CCcEEEEEEcCCCceeEeeccCC-cceeE
Q 019672 157 TKGSVLVYNVMELH------SHC-----EAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGT-YPSTI 222 (337)
Q Consensus 157 ~dg~v~i~d~~~~~------~~~-----~~~i~~~~~s~dg~~lat~s~--dg~~i~vwd~~~~~~~~~~~~~~-~~~~i 222 (337)
..|.|.|||..+-. .+. +..|+++.|+||++.||.+|. +.. +|+-.+.+......|.... .-..|
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence 58999999976432 111 178999999999999998875 334 6999998887766664321 12359
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
+||+|||.|. +||.|-.+|.|++|.|..
T Consensus 486 tc~aFSP~sG---~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 486 TCMAFSPNSG---YLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred EEEEecCCCc---eEEeecCCCceeeEeecc
Confidence 9999999998 999999999999999853
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=7.5e-19 Score=156.07 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=162.0
Q ss_pred CeEEEEEcCCCCEE-EEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672 9 PVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (337)
Q Consensus 9 ~v~~~~fs~dg~~l-a~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~ 85 (337)
.+.+++|+|||+.+ +++..++ +++||..+++.+..... .....+.+.++.+.+++.+. .++.|++||++++
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~l~~~d~~~~ 105 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE------DDNLVTVIDIETR 105 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC------CCCeEEEEECCCC
Confidence 46789999999976 5555554 79999998877654432 23444556566665544443 4789999999998
Q ss_pred CEEEEEEcCCceeEEEEcCCeEE--EEE-C-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672 86 TALRELNFLTSILAVRLNKKRLV--IVL-R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 86 ~~~~~~~~~~~v~~i~~~~~~~~--v~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
+.+..+.....+.++.+++++.. ++. + ..+.+||..+++....+..... ...+++++++.++++++. .++.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~v 181 (300)
T TIGR03866 106 KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSE-IGGTV 181 (300)
T ss_pred eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcC-CCCEE
Confidence 88888776666788889876533 333 3 3577889988776655433222 234556677777765553 48999
Q ss_pred EEEEccCCccccc------------CceEEEEeCCCCCEEEEE-eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 162 LVYNVMELHSHCE------------APLAAIVLSSNGMYIATA-SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 162 ~i~d~~~~~~~~~------------~~i~~~~~s~dg~~lat~-s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
.+||+.+++.... .....++|+|+|++++.+ +.+++ +.+||+++++.+..+..+ ..+.+++|+
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~---~~~~~~~~~ 257 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLVG---QRVWQLAFT 257 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEeC---CCcceEEEC
Confidence 9999988764321 123468899999986554 34455 689999998877655322 358899999
Q ss_pred cCCCcccEEEEE-eCCCcEEEEecCCCcc
Q 019672 229 QSMQFQDILVAT-SSSGSLHVFSPGFAIN 256 (337)
Q Consensus 229 ~dg~~~~~las~-s~dg~v~iw~l~~~~~ 256 (337)
|+|+ +|+++ +.+|+|+|||+++.+.
T Consensus 258 ~~g~---~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 258 PDEK---YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCC---EEEEEcCCCCeEEEEECCCCcE
Confidence 9999 88876 5689999999987654
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=3.3e-20 Score=162.02 Aligned_cols=194 Identities=14% Similarity=0.232 Sum_probs=155.4
Q ss_pred CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCC
Q 019672 48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTL 123 (337)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~ 123 (337)
++..+...+..+. ++.+| .|.++.++|..+++.+..++.+. .|+.+.++++...+.. |..|+||.....
T Consensus 221 gi~ald~~~s~~~-ilTGG------~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 221 GITALDIIPSSSK-ILTGG------EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CeeEEeecCCCCc-ceecC------CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 3444444444333 34444 58999999999999998888776 7999999988766554 779999998766
Q ss_pred eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCC
Q 019672 124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQG 196 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg 196 (337)
.....+..+.. .+..++.+|.+.|+..++ .||+..+.|++++..... -.+++.+|+|||..|++|+.||
T Consensus 294 s~~~~~~~h~~--~V~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 294 SEPTSSRPHEE--PVTGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred cCccccccccc--cceeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 54444444443 566777788888999888 599999999999886532 3489999999999999999999
Q ss_pred cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 197 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 197 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
. ++|||+.++..+..|. + |.++|.+++|+.+|. |||++.+|+.|++|||++.++.+
T Consensus 370 ~-vkiwdlks~~~~a~Fp-g-ht~~vk~i~FsENGY---~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 370 V-VKIWDLKSQTNVAKFP-G-HTGPVKAISFSENGY---WLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred e-EEEEEcCCccccccCC-C-CCCceeEEEeccCce---EEEEEecCCeEEEEEehhhcccc
Confidence 6 7999999999888885 3 678999999999999 99999999999999999877644
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3e-19 Score=150.64 Aligned_cols=238 Identities=17% Similarity=0.198 Sum_probs=158.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEE------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
+.+|++.|++++|+.||++||+++.|+. +||++..+.+. .......-..+.+.++..-+++... .-+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~------~g~ 155 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK------RGN 155 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc------cCC
Confidence 4588999999999999999999998875 99998876432 1122233344566666554433322 247
Q ss_pred eEEEEECCCCC---EEE------EEEc----CCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672 76 RLCLFNTTTGT---ALR------ELNF----LTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (337)
Q Consensus 76 ~v~iwd~~~~~---~~~------~~~~----~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (337)
++++|-+...+ ... ...+ ..++.++-...+ .++.+. |.+|.+|+++ |+.+..+.+.......+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 88888764321 111 1111 224555555444 344444 8899999998 88898887654433445
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCcc-------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHS-------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS- 205 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~- 205 (337)
+++ |++.++|++|. .-.|++|.+--++. .|++.|..++|||+.++++|.|.||+ +||||+.
T Consensus 235 avS--P~GRFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdV 309 (420)
T KOG2096|consen 235 AVS--PDGRFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDV 309 (420)
T ss_pred eeC--CCCcEEEEecC--CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccc
Confidence 554 66789999996 56699998743221 24589999999999999999999998 6999984
Q ss_pred ---CCceeEeeccCC-----cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 206 ---EATKSYSFRRGT-----YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 206 ---~~~~~~~~~~~~-----~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.++..+.++.+. ..+.-..|+.||.|+ .||.+ ...++++|..++++.
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---~lA~s-~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---SLAVS-FGSDLKVFASEDGKD 364 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---EEEee-cCCceEEEEcccCcc
Confidence 222222232221 112234799999998 66654 455899999877554
No 96
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=153.06 Aligned_cols=270 Identities=13% Similarity=0.168 Sum_probs=184.4
Q ss_pred eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672 10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~ 86 (337)
-+|+.||+.|.+||+|+.+| +-|||..+... ++..+.+++..+++..++..+...+ .|+.+++||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-------~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-------RDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-------CCceeEEEeccCCC
Confidence 67999999999999999988 69999999865 3445556777777777777766655 49999999999999
Q ss_pred EEEEEEcCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeeeeecCCCCCce--EE--EEeeCCCccEEEEcCCCCc
Q 019672 87 ALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNLKG--LC--AFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~la~~~~~~d 158 (337)
++.++.++++|....|+|. ..+++. +..-.+-++.+++ +.+-....... .. ...+++.+.++.++.+ .
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts--K 174 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS--K 174 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecC--c
Confidence 9999999999999999763 233433 5656666666532 22211111111 11 1135667789988874 8
Q ss_pred cEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-------ce--eEeeccCCcceeEE
Q 019672 159 GSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-------TK--SYSFRRGTYPSTIF 223 (337)
Q Consensus 159 g~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-------~~--~~~~~~~~~~~~i~ 223 (337)
|.+.++|..+.+.++. ..|..+.|+..|++|+.-+.|. +||.++++.- +. .+++..-..+.+-.
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 9999999999877643 6788999999999999999997 5899998621 11 12221111123356
Q ss_pred EEEeecCCCcccEEEEEeCC-CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672 224 SLSFGQSMQFQDILVATSSS-GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV 302 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~d-g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~ 302 (337)
+++||.||. |+++|+.. -.++||.-..+.-.+-.. |........--|.+.+ . +++
T Consensus 254 ~ccfs~dge---Yv~a~s~~aHaLYIWE~~~GsLVKILh------G~kgE~l~DV~whp~r--------------p-~i~ 309 (405)
T KOG1273|consen 254 KCCFSGDGE---YVCAGSARAHALYIWEKSIGSLVKILH------GTKGEELLDVNWHPVR--------------P-IIA 309 (405)
T ss_pred heeecCCcc---EEEeccccceeEEEEecCCcceeeeec------CCchhheeecccccce--------------e-eee
Confidence 889999999 88888755 459999866554432110 0000011112366654 2 333
Q ss_pred EEeCCcEEEEEEe
Q 019672 303 ITYNGYFVEYIFS 315 (337)
Q Consensus 303 ~~~dg~~~~~~~~ 315 (337)
.-..|.+++|...
T Consensus 310 si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 310 SIASGVVYIWAVV 322 (405)
T ss_pred eccCCceEEEEee
Confidence 4489999999874
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.8e-20 Score=173.49 Aligned_cols=199 Identities=10% Similarity=0.083 Sum_probs=145.8
Q ss_pred CCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCc
Q 019672 94 LTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELH 170 (337)
Q Consensus 94 ~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~ 170 (337)
...|++|.|+.+++++.. |.+|++|.+...+.+..|. +...++|+.++|. ..++++++ -||.|+||++...+
T Consensus 369 t~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~---HndfVTcVaFnPvDDryFiSGS--LD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 369 TADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS---HNDFVTCVAFNPVDDRYFISGS--LDGKVRLWSISDKK 443 (712)
T ss_pred chhheecccccCCeeEeccccccEEeecCCCcceeeEEe---cCCeeEEEEecccCCCcEeecc--cccceEEeecCcCe
Confidence 348999999988877765 9999999999989998885 3446788888774 44555555 69999999998777
Q ss_pred ccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc------ceeEEEEEeecCCCcccEEEEE
Q 019672 171 SHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY------PSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 171 ~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~------~~~i~~l~fs~dg~~~~~las~ 240 (337)
.+. +.-|++++|.|||+..+.|+-+|. +++|++...+....+.-..+ ...|+.+.|.|... +.++++
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~--~~vLVT 520 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP--DEVLVT 520 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC--CeEEEe
Confidence 653 278999999999999999999998 58999988776544321111 12699999998765 479999
Q ss_pred eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672 241 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 319 (337)
Q Consensus 241 s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~ 319 (337)
++|..|+|||+.......+ |- ++... -+ +....+..++++|++++.|-.|++|+++....
T Consensus 521 SnDSrIRI~d~~~~~lv~K------fK-G~~n~-----~S-------Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHK------FK-GFRNT-----SS-------QISASFSSDGKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred cCCCceEEEeccchhhhhh------hc-ccccC-----Cc-------ceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence 9999999999854332211 00 01000 00 01112345779999999999999999866543
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.3e-18 Score=152.99 Aligned_cols=264 Identities=11% Similarity=0.046 Sum_probs=175.4
Q ss_pred CEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672 20 SGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (337)
Q Consensus 20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 97 (337)
..+++++.++ +++||+.+++.+..... .....+.+.++...+++++. .++.|++||..+++.+..+.....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCCc
Confidence 4677777666 69999998887665543 22334556666665544444 4889999999999888777655556
Q ss_pred eEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc
Q 019672 98 LAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173 (337)
Q Consensus 98 ~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~ 173 (337)
..+.++++. ++++. ++.+++||+++.+.+..+..... ..++.++|++.+++++.. ....+.+||..+.+...
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEE
Confidence 677787653 44443 67999999998877776653322 234566778888887763 23457788988765432
Q ss_pred c----CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeeccCC---c--ceeEEEEEeecCCCcccEEE-EEeC
Q 019672 174 E----APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGT---Y--PSTIFSLSFGQSMQFQDILV-ATSS 242 (337)
Q Consensus 174 ~----~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~~~~---~--~~~i~~l~fs~dg~~~~~la-s~s~ 242 (337)
. ..+.+++|+|+|++|+.++ .+|. |++||+++++.+.++.... . ......++|+|+++ +++ +.+.
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~---~~~~~~~~ 227 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK---TAFVALGP 227 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCC---EEEEEcCC
Confidence 2 4567899999999886554 5776 6999999998776653211 0 11235689999999 654 4456
Q ss_pred CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE-eCCcEEEEEEecCCC
Q 019672 243 SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINNC 319 (337)
Q Consensus 243 dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~~~~~~~~~~~~ 319 (337)
++.|++||+++.+.... . .... ..+ .+.+.+++++|+++. .+|.+.+|+++..+.
T Consensus 228 ~~~i~v~d~~~~~~~~~-------~--~~~~---~~~----------~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLDY-------L--LVGQ---RVW----------QLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCeEEEEECCCCcEEEE-------E--EeCC---Ccc----------eEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 77899999875432110 0 0000 011 122355668888764 599999999876554
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.3e-19 Score=147.91 Aligned_cols=235 Identities=10% Similarity=0.085 Sum_probs=164.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEE--cCCeEEEEE---CCeEEEEEC
Q 019672 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL--NKKRLVIVL---REKTYIYDA 120 (337)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~--~~~~~~v~~---d~~i~i~d~ 120 (337)
+.+..+++..++..++.++ .|.+++|||..++++++++.... -+-.+.| +.+.++.++ |.+|+..++
T Consensus 15 ~~i~sl~fs~~G~~litss-------~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS-------EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CceeEEEecCCCCEEEEec-------CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3444455544555554433 58899999999999999887654 3333444 333333333 779999999
Q ss_pred CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc---cCceEEEEeCCCCCEEEEEeCCCc
Q 019672 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC---EAPLAAIVLSSNGMYIATASEQGT 197 (337)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~---~~~i~~~~~s~dg~~lat~s~dg~ 197 (337)
.+.+.++.+..|.. .+..++.+|-+..+.+++ .|++|++||++..+... -..-..+||+|+|-.+|+|....
T Consensus 88 ~dNkylRYF~GH~~--~V~sL~~sP~~d~FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~- 162 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKK--RVNSLSVSPKDDTFLSSS--LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE- 162 (311)
T ss_pred ecCceEEEcCCCCc--eEEEEEecCCCCeEEecc--cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC-
Confidence 99999999987655 566777777667777777 59999999999665432 25556789999999999998876
Q ss_pred EEEEEEcCCCc--eeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc-ccccc
Q 019672 198 IIRVFLVSEAT--KSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG-SILPE 273 (337)
Q Consensus 198 ~i~vwd~~~~~--~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~-~~~~~ 273 (337)
.|++||++.-. ...+|... ....+.+.|.|||||+ +|+.+...+.+++.|--.+..... -+.+.. ..+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK---~iLlsT~~s~~~~lDAf~G~~~~t---fs~~~~~~~~~- 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK---SILLSTNASFIYLLDAFDGTVKST---FSGYPNAGNLP- 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC---EEEEEeCCCcEEEEEccCCcEeee---EeeccCCCCcc-
Confidence 48999998642 33344332 2345789999999999 899999999999999655442110 000000 0011
Q ss_pred cceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 274 SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 274 ~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
....+.|+++.+++++.||++++|+++
T Consensus 236 ---------------~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 236 ---------------LSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ---------------eeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 011236777999999999999999993
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.2e-20 Score=161.42 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=166.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+.+|.+.|+.+.++. +..|.+|.++.++.|-.+. ..+....+ ......+.+....-.++++| ..|.|||.
T Consensus 105 f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG-------e~i~IWD~ 174 (433)
T KOG0268|consen 105 FKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCG-------EQIDIWDE 174 (433)
T ss_pred eecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccC-------ceeeeccc
Confidence 357888999999999 6778888888899998764 34444432 12222222222222223332 48999999
Q ss_pred CCCCEEEEEEcCC-ceeEEEEcCCe---EEEE-ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 83 TTGTALRELNFLT-SILAVRLNKKR---LVIV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 83 ~~~~~~~~~~~~~-~v~~i~~~~~~---~~v~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
+...++..++... .|.+++++|.. +..+ .|+.|.+||++...+++.+..... ...++++| +.+.++++. +
T Consensus 175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnP-eafnF~~a~-E 249 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNP-EAFNFVAAN-E 249 (433)
T ss_pred ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc---ccceecCc-cccceeecc-c
Confidence 9999999888765 68999998754 3333 389999999999988877643222 23557777 445555554 7
Q ss_pred ccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672 158 KGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 158 dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg 231 (337)
|..+..||++..... |.++|..++|||.|+.+++||.|.+ ||||.+..+..-..+ ....-..|.|+.||.|.
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDS 327 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhh-hHhhhheeeEEEEeccc
Confidence 999999999876542 3389999999999999999999987 799999877542111 11112359999999999
Q ss_pred CcccEEEEEeCCCcEEEEecCC
Q 019672 232 QFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 232 ~~~~~las~s~dg~v~iw~l~~ 253 (337)
+ |+++||+|+.|++|.-..
T Consensus 328 k---yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 328 K---YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred c---EEEecCCCcceeeeecch
Confidence 9 999999999999998654
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=165.61 Aligned_cols=201 Identities=14% Similarity=0.194 Sum_probs=140.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC----EEEEEE--cCCceeEEEEcC--CeEEEEE-CCeEEE
Q 019672 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALRELN--FLTSILAVRLNK--KRLVIVL-REKTYI 117 (337)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~----~~~~~~--~~~~v~~i~~~~--~~~~v~~-d~~i~i 117 (337)
+.-.+.++..++++..+++|+ -|.+|++||+..=. ..+.+. -.+.|..+.+++ +.+++++ .-.++|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs-----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGS-----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred CceEEEEeeecCCCceeeecc-----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 444556677788888888885 79999999986321 111111 124677777764 5555555 668999
Q ss_pred EECCCCeeeeeec----------CCCCCceEEEEeeCCCccE-EEEcCCCCccEEEEEEccCCcccc-----------cC
Q 019672 118 YDANTLAILDTID----------TVPNLKGLCAFSPSLNACF-LAVPASTTKGSVLVYNVMELHSHC-----------EA 175 (337)
Q Consensus 118 ~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-la~~~~~~dg~v~i~d~~~~~~~~-----------~~ 175 (337)
+|-...+...... +..+...+.+-+++|++.- +.+++ .||+++|||+...+... .-
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--YDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--CCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9965544433332 2234455666777776543 44555 59999999998765321 16
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeeccCCcc-eeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRRGTYP-STIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 176 ~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~~~~~~-~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+++.++|+|||++||+|+.||+ |.+|+..+.. ....++..|.. ..|+||+||+||+ +|++-+.|+++++|||+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---YLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeeeccCCCCceeEEEeccccc---hhhhccCCCceeeeecc
Confidence 7999999999999999999998 7999975432 22333333333 3699999999999 99999999999999999
Q ss_pred CCcccC
Q 019672 253 FAINQR 258 (337)
Q Consensus 253 ~~~~~~ 258 (337)
..+++-
T Consensus 395 q~kkpL 400 (641)
T KOG0772|consen 395 QFKKPL 400 (641)
T ss_pred ccccch
Confidence 877643
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.7e-20 Score=171.11 Aligned_cols=229 Identities=9% Similarity=0.149 Sum_probs=165.8
Q ss_pred EEEEc-CCCCEEEEEcCCce-EEEeCCCCcE------EEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 12 FVSFN-QDNSGFALSTKDGF-KIFDSSTGRL------CYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 12 ~~~fs-~dg~~la~g~~~g~-~vw~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.+..+ |.+++|.+|+.||. ++|+...-.. +...+.| .+.-+.....++.++.++ .|-+|++|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~ 101 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------SDTTVKVWN 101 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------CCceEEEee
Confidence 34444 56678999999985 9998643321 1111111 122222334455555554 599999999
Q ss_pred CCCC--CEEEEEE-cCCceeEEEE-cCCeEEEEE---CCeEEEEECCCC--eeeeeec------CC-CCCceEEEEeeCC
Q 019672 82 TTTG--TALRELN-FLTSILAVRL-NKKRLVIVL---REKTYIYDANTL--AILDTID------TV-PNLKGLCAFSPSL 145 (337)
Q Consensus 82 ~~~~--~~~~~~~-~~~~v~~i~~-~~~~~~v~~---d~~i~i~d~~~~--~~~~~~~------~~-~~~~~~~~~~~~~ 145 (337)
...+ -++.++. |...|.+++. .++...+++ |+.|++||++++ +.+..+. .. .....+++++-++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 8876 3444453 4457999988 555555554 889999999977 2333321 11 2335678888888
Q ss_pred CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672 146 NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
.+..++.+| ..+.+++||.++.+.. |+..|.++..++||+.+++||+||+ ||+||+...+++.++.. |..
T Consensus 182 t~t~ivsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e 256 (735)
T KOG0308|consen 182 TGTIIVSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKE 256 (735)
T ss_pred cceEEEecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccC
Confidence 887777776 5899999999987653 6689999999999999999999998 79999998889988753 344
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
.|+++.-+|+=+ .+.+|+.||.|..=|+..+.
T Consensus 257 ~VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 257 GVWALQSSPSFT---HVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ceEEEeeCCCcc---eEEecCCCCcEEecccCCch
Confidence 499999999988 99999999999999998753
No 103
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.4e-20 Score=151.16 Aligned_cols=230 Identities=11% Similarity=0.128 Sum_probs=159.7
Q ss_pred CCCeEEEEEcCCCCE-EEEE-cCCceEEEeCCCC-cEEEEEeeCCEEEEEEccC--CCEEEEEeCCCCCCCCCceEEEEE
Q 019672 7 SYPVFFVSFNQDNSG-FALS-TKDGFKIFDSSTG-RLCYERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~-la~g-~~~g~~vw~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
...+..++|++...- ++++ +++.+++||+..- +.+...+.|.-.+..+.++ .+...+.+. .|++|++|+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS------WD~TiKLW~ 133 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS------WDGTIKLWD 133 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec------cCCceEeec
Confidence 456889999987643 4444 4555799995332 3444443343344444443 344445553 899999999
Q ss_pred CCCCCEEEEEEcCC-ceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-CCccEEEEcCC
Q 019672 82 TTTGTALRELNFLT-SILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-LNACFLAVPAS 155 (337)
Q Consensus 82 ~~~~~~~~~~~~~~-~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~ 155 (337)
...++.+.++..+. -|....|+|. -+..++ |+.+++||++.......|..|.. .+++..++ -+..++++++
T Consensus 134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg~- 210 (311)
T KOG0277|consen 134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATGG- 210 (311)
T ss_pred CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEecC-
Confidence 99988898887655 6888888763 343333 89999999986544444665542 33333332 2455778877
Q ss_pred CCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 156 TTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
.|+.|+.||+++.+.. |.-.|..+.|||. ...||++|.|-+ +||||...+....+.. .+|..-+..+.||
T Consensus 211 -vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~-~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 211 -VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETV-DHHTEFVCGLDWS 287 (311)
T ss_pred -CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhh-hccceEEeccccc
Confidence 5999999999987642 4478999999995 458999999987 5999998665443322 2345568889999
Q ss_pred cCCCcccEEEEEeCCCcEEEEe
Q 019672 229 QSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~ 250 (337)
+-.. .++|+++.|+.++||+
T Consensus 288 ~~~~--~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 288 LFDP--GQVASTGWDELLYVWN 307 (311)
T ss_pred cccC--ceeeecccccceeeec
Confidence 7544 3999999999999998
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=2e-19 Score=148.34 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=174.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+|.+.|+|+..+.+.+++++|+.|. .++||+++|+++..... ..+..+++.+..++.+.+....-. ..+.|.++|+
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg--~~~~v~~fdi 127 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG--YTCFVSVFDI 127 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC--cceEEEEEEc
Confidence 6889999999999999999998775 69999999999988754 567788888888887776542111 2568999998
Q ss_pred C-------CCCEEEEEEcC-CceeEEEEcCC-eEEEEE--CCeEEEEECCCCeee-eeecCCCCCceEEEEeeCCCccEE
Q 019672 83 T-------TGTALRELNFL-TSILAVRLNKK-RLVIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 83 ~-------~~~~~~~~~~~-~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 150 (337)
+ ..++...+..+ +.++..-|.+- ..+++. ++.|.+||+++++.+ ...+.+ ...+..+.++++..++
T Consensus 128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYF 205 (327)
T ss_pred cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccCCcceE
Confidence 7 44556665544 47777778653 334444 889999999998554 333433 3367788888999999
Q ss_pred EEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeC-CCcEEEEEEcCCCc------------eeEee
Q 019672 151 AVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASE-QGTIIRVFLVSEAT------------KSYSF 213 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~-dg~~i~vwd~~~~~------------~~~~~ 213 (337)
++++ .|.+-++||..+...+.+ .||++.+++|.-..++.|+. +..-+--=+.+.|+ .+.++
T Consensus 206 iT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 206 ITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred Eecc--cCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 9988 599999999999887654 99999999997777666653 32212111222332 22333
Q ss_pred ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+ + |-.+|++|+|+|+|+ -.++|+.||.|+|.-.+
T Consensus 284 k-G-HFGPINsvAfhPdGk---sYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 284 K-G-HFGPINSVAFHPDGK---SYSSGGEDGYVRLHHFD 317 (327)
T ss_pred c-c-cccCcceeEECCCCc---ccccCCCCceEEEEEec
Confidence 2 2 346899999999999 99999999999987554
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=9.4e-19 Score=155.58 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=189.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
..+.-|+|++|.++|+ .++|..+|+ .||+..+.+.... .+.+++..++++-++.++ . || .|++|..||
T Consensus 244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll--S-Gg-----KDRki~~Wd 314 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL--S-GG-----KDRKIILWD 314 (626)
T ss_pred ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe--e-cC-----ccceEEecc
Confidence 3446799999999998 566777775 9999877765433 344667777776555443 3 43 699999999
Q ss_pred CCCCCEEEEEEcC---CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 82 TTTGTALRELNFL---TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 82 ~~~~~~~~~~~~~---~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
..-+.+...+.+ ++|+.|+-.+..+++.+ .+.|.-=.+.++-.+.. ..+ ...+..++.+|...++++++ .
T Consensus 315 -~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v-~gh--~delwgla~hps~~q~~T~g--q 388 (626)
T KOG2106|consen 315 -DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV-QGH--GDELWGLATHPSKNQLLTCG--Q 388 (626)
T ss_pred -ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE-Eec--ccceeeEEcCCChhheeecc--C
Confidence 333444444444 47888887666677777 55666556665533322 222 33677778788888999998 6
Q ss_pred ccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 158 KGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 158 dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
|+.+++|+ ..+.. ...++.|+.|+|.| .+|.|+..|..+ |.|.++...+. ++. ..+++.+|+|+|+|.
T Consensus 389 dk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~-V~d~e~~~lv~-~~~--d~~~ls~v~ysp~G~- 460 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWF-VLDTETQDLVT-IHT--DNEQLSVVRYSPDGA- 460 (626)
T ss_pred cceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEE-EEecccceeEE-EEe--cCCceEEEEEcCCCC-
Confidence 99999999 22222 23899999999999 999999999864 99999855543 332 256899999999999
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
+||.||.|+.|+||.++.....-.. -..+.+ ....++.+..+++++++-+.|-.+..|
T Consensus 461 --~lAvgs~d~~iyiy~Vs~~g~~y~r--~~k~~g-----------------s~ithLDwS~Ds~~~~~~S~d~eiLyW- 518 (626)
T KOG2106|consen 461 --FLAVGSHDNHIYIYRVSANGRKYSR--VGKCSG-----------------SPITHLDWSSDSQFLVSNSGDYEILYW- 518 (626)
T ss_pred --EEEEecCCCeEEEEEECCCCcEEEE--eeeecC-----------------ceeEEeeecCCCceEEeccCceEEEEE-
Confidence 9999999999999999866542110 001111 112344455566899999999999989
Q ss_pred EecCCCCe
Q 019672 314 FSINNCCE 321 (337)
Q Consensus 314 ~~~~~~~~ 321 (337)
.+..|.+
T Consensus 519 -~~~~~~~ 525 (626)
T KOG2106|consen 519 -KPSECKQ 525 (626)
T ss_pred -ccccCcc
Confidence 5666653
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=1.9e-19 Score=165.35 Aligned_cols=270 Identities=10% Similarity=0.142 Sum_probs=188.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE--EEee-CC-EEE-EEEccCCCEEEEEeCCCCCCCCCce
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAV-GA-FSI-VEMLYSSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~--~~~~-~~-~~~-~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (337)
..+|+..|..+.+.+.. +++.++.++ +++|.-..++.+- .... .+ +.. +++....+...++++ .|..
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~------~D~~ 82 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG------MDTT 82 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec------ccce
Confidence 35788889888887775 667777555 7999965443322 1221 12 222 233332344445554 6999
Q ss_pred EEEEECCCCCEEEEEEc-CCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672 77 LCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (337)
Q Consensus 77 v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 153 (337)
+.+|...+..++..+.. .+.|++++...+..++.+ |.++++|-+... ...+.. ++..+.++..-|++ .++++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~g--H~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQG--HTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccCC--cchheeeeeecCCC-cEEec
Confidence 99999999999988764 458999997766665554 999999987543 334444 44456677766666 55666
Q ss_pred CCCCccEEEEEEccCCc---ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672 154 ASTTKGSVLVYNVMELH---SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 230 (337)
Q Consensus 154 ~~~~dg~v~i~d~~~~~---~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d 230 (337)
+ .|.+|++|.-.+.- ..|+.-|+.+++-|++. +++++.||. ||+|++ +|+.+.++. .|..-|++++..++
T Consensus 158 s--aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~--ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 158 S--ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMH--GHTNFVYSISMALS 230 (745)
T ss_pred c--CcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeee--ccceEEEEEEecCC
Confidence 6 59999999864322 23668899999998864 679999996 799999 788887763 35677999997777
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEE
Q 019672 231 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 310 (337)
Q Consensus 231 g~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~ 310 (337)
++ .+++++.|++++||+... ..+.+.....++|+... -.+..|++||+||.++
T Consensus 231 ~~---~Ivs~gEDrtlriW~~~e-------------~~q~I~lPttsiWsa~~-----------L~NgDIvvg~SDG~Vr 283 (745)
T KOG0301|consen 231 DG---LIVSTGEDRTLRIWKKDE-------------CVQVITLPTTSIWSAKV-----------LLNGDIVVGGSDGRVR 283 (745)
T ss_pred CC---eEEEecCCceEEEeecCc-------------eEEEEecCccceEEEEE-----------eeCCCEEEeccCceEE
Confidence 77 899999999999999751 11122222345777643 1235699999999999
Q ss_pred EEEEecCC
Q 019672 311 EYIFSINN 318 (337)
Q Consensus 311 ~~~~~~~~ 318 (337)
+|..+..+
T Consensus 284 VfT~~k~R 291 (745)
T KOG0301|consen 284 VFTVDKDR 291 (745)
T ss_pred EEEecccc
Confidence 99987553
No 107
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=3e-19 Score=153.65 Aligned_cols=230 Identities=14% Similarity=0.194 Sum_probs=168.0
Q ss_pred CCCCCCeEEEEEc-CCC--CEEEEEcCCc-eEEEeCCCCcEEEE------EeeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672 4 QSSSYPVFFVSFN-QDN--SGFALSTKDG-FKIFDSSTGRLCYE------RAVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 4 ~~~~~~v~~~~fs-~dg--~~la~g~~~g-~~vw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (337)
.+|.++|.+++|- ++. ..|++++.|. +++|-.+.++.... .+...+..+....+++.+ +++ +.
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~--~Sg-----S~ 213 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRF--CSG-----SW 213 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeE--Eee-----cc
Confidence 4788899988774 333 2477777665 69998877754321 233455556655555544 444 37
Q ss_pred CceEEEEECCCC-------------------------CEEEEEE-cCCceeEEEEcCCeEE-EEE-CCeEEEEECCCCee
Q 019672 74 PRRLCLFNTTTG-------------------------TALRELN-FLTSILAVRLNKKRLV-IVL-REKTYIYDANTLAI 125 (337)
Q Consensus 74 d~~v~iwd~~~~-------------------------~~~~~~~-~~~~v~~i~~~~~~~~-v~~-d~~i~i~d~~~~~~ 125 (337)
|++|+||+.++. .++.++. |..+|.++.|.+...+ .++ |.+|+.||+.+++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc
Confidence 999999993211 1233333 3458999999764433 333 99999999999988
Q ss_pred eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------cccCceEEEEeCCCC-CEEEEEeCCC
Q 019672 126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------HCEAPLAAIVLSSNG-MYIATASEQG 196 (337)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg-~~lat~s~dg 196 (337)
..++.+. ..+.+++..|...+||+++ .|..+++||.+++.- .|++-|.++.|+|.. ..|++||.|+
T Consensus 294 ~~~~~~~---ksl~~i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 294 KSTLTTN---KSLNCISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred eeeeecC---cceeEeecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 8777653 3577888888888888887 599999999987642 255889999999954 4789999999
Q ss_pred cEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 197 TIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 197 ~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+ +++||+++.+ .++.+.+ |...|.++.|+..+ .+++|+.|++|+|+.-.
T Consensus 369 t-~klWDvRS~k~plydI~~--h~DKvl~vdW~~~~----~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 T-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWNEGG----LIVSGGADNKLRIFKGS 418 (423)
T ss_pred e-EEEEEeccCCCcceeecc--CCceEEEEeccCCc----eEEeccCcceEEEeccc
Confidence 8 6999999887 8888754 36679999998544 79999999999999743
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.9e-19 Score=149.69 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=168.5
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCE--EEEEeCCCCCCCCCceEE
Q 019672 2 SNQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL--LAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 2 ~~~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~d~~v~ 78 (337)
+.++|.++|++++. +|.++|+|+.| .++|||..+.+.+-..-.+.-.+.++.|.++. --+.++ +.|+.|.
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~-----sdDG~i~ 110 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG-----SDDGHII 110 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee-----cCCCcEE
Confidence 46789999999996 57789988876 57999998876654433333334444444432 133344 2699999
Q ss_pred EEECCCCCEEEEEEcC-CceeEEEEcCCe-EEE--EECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 79 LFNTTTGTALRELNFL-TSILAVRLNKKR-LVI--VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 79 iwd~~~~~~~~~~~~~-~~v~~i~~~~~~-~~v--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
+|+...=+++..+..+ ..|+.++++|.. +++ ..|+.+++||+-.++.-........+ .. +.++|.+.+++..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~--v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TL--VSWSPQGDHFVVSG 187 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-ee--eEEcCCCCEEEEEe
Confidence 9999887778777644 479999999865 333 33889999999887655444332222 22 45557777777776
Q ss_pred CCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe--e
Q 019672 155 STTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF--G 228 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f--s 228 (337)
...|-||.+.+.+...+ ..+.|+.|-. +..|++|.+|+. |++||..++..+..+. .|...|.++.+ .
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~-i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEW-ISLKDTDSDTPLTEFL--AHENRVKDIASYTN 260 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCce-EEEeccCCCccceeee--cchhheeeeEEEec
Confidence 35699999887665433 4477777764 567889999986 7999999988877774 35677888874 3
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672 229 QSMQFQDILVATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~ 257 (337)
|++. +|+++|.||.|+|||++.....
T Consensus 261 ~~~~---~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 261 PEHE---YLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred CCce---EEEEeccCceEEEEEccccccC
Confidence 6676 9999999999999999877543
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=6.4e-19 Score=169.28 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=197.1
Q ss_pred CCCeEEEEEcCCCCEEEEEc--CC-ceEEEeCCCCc------------EE--EEEeeCCEEEEEEccCCCEEEEEeCCCC
Q 019672 7 SYPVFFVSFNQDNSGFALST--KD-GFKIFDSSTGR------------LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQ 69 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~--~~-g~~vw~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 69 (337)
...|.+++.+|||..+|+|+ .| +.+||+.+.-- .+ ...+.+.+.++.+.+++.++|..+
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS---- 88 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS---- 88 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc----
Confidence 44699999999999999998 44 46899865431 01 112335677777887777776654
Q ss_pred CCCCCceEEEEECCC----------C--------CEEEEE-EcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeee
Q 019672 70 PSLSPRRLCLFNTTT----------G--------TALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILD 127 (337)
Q Consensus 70 ~~~~d~~v~iwd~~~----------~--------~~~~~~-~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~ 127 (337)
.|+-|.||.... | +....+ .|...|.++.|+|+..++++ |++|.|||.++.+.+.
T Consensus 89 ---DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 89 ---DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ---CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 489999999773 1 122333 35568999999988766655 9999999999998888
Q ss_pred eecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----------CceEEEEeCCCCCEEEEEeC--
Q 019672 128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----------APLAAIVLSSNGMYIATASE-- 194 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----------~~i~~~~~s~dg~~lat~s~-- 194 (337)
.+..|.. -+-.++++|-++++|+-+ .|++|+||++.+....+. .....+.|||||++||++..
T Consensus 166 vl~~H~s--~VKGvs~DP~Gky~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 VLRGHQS--LVKGVSWDPIGKYFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeecccc--cccceEECCccCeeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 8876654 345678889999999988 599999999766443321 55789999999999998743
Q ss_pred -CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC--------CCc--c----cEEEEEeCCCcEEEEecCCCcccCC
Q 019672 195 -QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS--------MQF--Q----DILVATSSSGSLHVFSPGFAINQRR 259 (337)
Q Consensus 195 -dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d--------g~~--~----~~las~s~dg~v~iw~l~~~~~~~~ 259 (337)
-+..+.|.+-.+.+.-+.|- | |.+++.+++|+|- |.. + ..+|+||.|++|-||....+++.-
T Consensus 242 ~~~~~~~IieR~tWk~~~~Lv-G-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~- 318 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLV-G-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF- 318 (942)
T ss_pred CCcceeEEEecCCceeeeeee-c-CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh-
Confidence 22346777766665555553 3 3568999999973 110 1 168999999999999975443311
Q ss_pred CCccccccc-ccccccc-eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 260 GGRTSSILG-SILPESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 260 ~~~~~~~~~-~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
+. .+..+.+ .-.|++.+ -.|++.+.||+|..+.|+.++=+
T Consensus 319 -------vi~~lf~~SI~DmsWspdG--------------~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 319 -------VIHNLFNKSIVDMSWSPDG--------------FSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred -------hhhhhhcCceeeeeEcCCC--------------CeEEEEecCCeEEEEEcchHHhC
Confidence 11 1122222 23566544 67999999999999999766544
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=168.20 Aligned_cols=237 Identities=11% Similarity=0.149 Sum_probs=166.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc----EEEE-EeeC--CEEEEEE---ccCCCEEEEEeCCCCCCCCCce
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR----LCYE-RAVG--AFSIVEM---LYSSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~----~~~~-~~~~--~~~~~~~---~~~~~~~~~~~~g~~~~~~d~~ 76 (337)
+.+...++.+++-..+++++..-++||-..+.. +... .... ...+..+ .+..|+++.++. .+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~-------nG~ 111 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST-------NGV 111 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC-------CCc
Confidence 456778889999999999888878898765542 1111 1111 1112222 334577777765 689
Q ss_pred EEEEECCC---CCEEEEE-EcCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 77 LCLFNTTT---GTALREL-NFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 77 v~iwd~~~---~~~~~~~-~~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
|.+||+.. ++.+..+ +|...+..+.|+. +.++.++ |+.|++||++..+...++....+...-+.+++.++.
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~- 190 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN- 190 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-
Confidence 99999976 3433333 3445788888863 4444444 999999999988777777654444555677776643
Q ss_pred EEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 149 FLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
.++++. +.|.+++||++.... .|.++|.|+.|+|++.+||||+.|++ |+|||+.+++....... ...++|
T Consensus 191 ~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tI-nTiapv 266 (839)
T KOG0269|consen 191 KFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTI-NTIAPV 266 (839)
T ss_pred eEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEE-eeccee
Confidence 445444 589999999997653 36699999999999999999999997 79999987654222211 234679
Q ss_pred EEEEeecCCCcccEEEEEeC--CCcEEEEecCCCccc
Q 019672 223 FSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQ 257 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~--dg~v~iw~l~~~~~~ 257 (337)
.+|.|-|+.++ .||+++. |-.|||||+..+.-|
T Consensus 267 ~rVkWRP~~~~--hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 267 GRVKWRPARSY--HLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred eeeeeccCccc--hhhhhhccccceEEEEeecccccc
Confidence 99999999884 7877764 557999999876543
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1e-18 Score=153.88 Aligned_cols=278 Identities=14% Similarity=0.162 Sum_probs=190.1
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--cEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672 2 SNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 2 ~~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (337)
++.++.++|++++|+|....|.+++-++ ++||-++.. .++...+. -++...++.+.+.-.+++++ ....
T Consensus 208 a~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky 281 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKY 281 (514)
T ss_pred cCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceE
Confidence 4568889999999999999988777766 699987754 33444433 45556666666664555555 4678
Q ss_pred EEEEECCCCCEEEEE---EcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672 77 LCLFNTTTGTALREL---NFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF 149 (337)
Q Consensus 77 v~iwd~~~~~~~~~~---~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (337)
+..||+.+.+...-- .... .+..+.++++. +++++ .|.|.+.-..+++.+.++.... .+..+.++.++..
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE 358 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence 999999887654321 1111 34445555544 44444 6789999888998888887543 3556666667777
Q ss_pred EEEcCCCCccEEEEEEccCCccccc----Cc--eEEEEeCCCCCEEEEEeCCCcEEEEEEcCC------CceeEeeccCC
Q 019672 150 LAVPASTTKGSVLVYNVMELHSHCE----AP--LAAIVLSSNGMYIATASEQGTIIRVFLVSE------ATKSYSFRRGT 217 (337)
Q Consensus 150 la~~~~~~dg~v~i~d~~~~~~~~~----~~--i~~~~~s~dg~~lat~s~dg~~i~vwd~~~------~~~~~~~~~~~ 217 (337)
|..++ .+|.|.+||++....++. +. -++++.|++|.+||+||+.|. +.|||.++ .+++.++..
T Consensus 359 l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN-- 433 (514)
T KOG2055|consen 359 LLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN-- 433 (514)
T ss_pred EEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--
Confidence 76666 389999999999887765 33 467888999999999999995 79999653 334444421
Q ss_pred cceeEEEEEeecCCCcccEEEEEeCC--CcEEEEecCCCcccCCCCcccccccccccccceeecccccce-eeeeccCCC
Q 019672 218 YPSTIFSLSFGQSMQFQDILVATSSS--GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH-VLRNAFPAG 294 (337)
Q Consensus 218 ~~~~i~~l~fs~dg~~~~~las~s~d--g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~ 294 (337)
-...|++|.|+||++ +||.+|.- +.+++--+....- +..+.+. ... -.+..++|+
T Consensus 434 Ltt~Itsl~Fn~d~q---iLAiaS~~~knalrLVHvPS~TV----------FsNfP~~---------n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQ---ILAIASRVKKNALRLVHVPSCTV----------FSNFPTS---------NTKVGHVTCMAFS 491 (514)
T ss_pred hheeeeeeeeCcchh---hhhhhhhccccceEEEeccceee----------eccCCCC---------CCcccceEEEEec
Confidence 234699999999999 88888764 5566665543221 1111110 000 012344567
Q ss_pred cccCEEEEEEeCCcEEEEEEe
Q 019672 295 VKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 295 ~~~~~l~~~~~dg~~~~~~~~ 315 (337)
|.+.++++|...|.+..|.|.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 777899999999999999874
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-17 Score=155.33 Aligned_cols=234 Identities=12% Similarity=0.181 Sum_probs=164.5
Q ss_pred eEEEEEcCCC--CEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672 10 VFFVSFNQDN--SGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (337)
Q Consensus 10 v~~~~fs~dg--~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~ 86 (337)
|+++. +|.- +.++.|+.+| +++||+.+++++++.+.....+.++...+-+-+++-| ..+|+|.+.|++.++
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG-----~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIG-----LENGTVIIFNLKFDK 235 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEe-----ccCceEEEEEcccCc
Confidence 66553 6665 3478888877 6999999999999988766666666655533222222 258999999999999
Q ss_pred EEEEEEcC-CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeec-CCCC--------------------------
Q 019672 87 ALRELNFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTID-TVPN-------------------------- 134 (337)
Q Consensus 87 ~~~~~~~~-~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~-~~~~-------------------------- 134 (337)
.+.++.+. ++|++++|. +..+++++ .|.+.+||+...+.+..+. .|..
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99999997 899999996 33444444 4678888886544333221 0000
Q ss_pred --------------------C---------ce------------------------------------------------
Q 019672 135 --------------------L---------KG------------------------------------------------ 137 (337)
Q Consensus 135 --------------------~---------~~------------------------------------------------ 137 (337)
| .+
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 0 00
Q ss_pred -------------------------------------------------------EEEEeeCCCccEEEEcCCCCccEEE
Q 019672 138 -------------------------------------------------------LCAFSPSLNACFLAVPASTTKGSVL 162 (337)
Q Consensus 138 -------------------------------------------------------~~~~~~~~~~~~la~~~~~~dg~v~ 162 (337)
+.|++.++.|.+.+.+. ..|.|-
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~--S~G~Id 473 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY--SKGTID 473 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec--cCCeEE
Confidence 12222233333433333 478899
Q ss_pred EEEccCCcc--------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-------------------
Q 019672 163 VYNVMELHS--------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR------------------- 215 (337)
Q Consensus 163 i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~------------------- 215 (337)
+|+++++.. .|..+|+.++.+.-++.+++++.+|. ++.||..+...+..++.
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 999887643 34589999999999999999999996 69999987764333321
Q ss_pred --------------------CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 216 --------------------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 216 --------------------~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
-.|...|++++|||||+ +|++++.|++|++||+.+..
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr---WlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR---WLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc---EEEEeecCCcEEEEeccCcc
Confidence 12456799999999999 99999999999999998754
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=153.35 Aligned_cols=244 Identities=15% Similarity=0.184 Sum_probs=174.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE-EEEc--CCceeEEEEcC-CeEEEEE-CCeEEEEECC
Q 019672 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNF--LTSILAVRLNK-KRLVIVL-REKTYIYDAN 121 (337)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~-~~~~--~~~v~~i~~~~-~~~~v~~-d~~i~i~d~~ 121 (337)
.++..+++...++.+|+.- .++.|.||+++.+-... .+.. ...|.+++|.+ .+++.+. +++|.-||+.
T Consensus 26 s~I~slA~s~kS~~lAvsR-------t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSR-------TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred cceEEEEEeccCCceeeec-------cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence 4555566666777777654 48999999998864433 2333 34799999984 4555554 8999999999
Q ss_pred CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-------ccCceEEEEeCCCCCEEEEEeC
Q 019672 122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-------CEAPLAAIVLSSNGMYIATASE 194 (337)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~lat~s~ 194 (337)
++++...++...+ .+.+++.+|.+..++.+. +||.+..++....... +++.|.+++|+|+|..||+||.
T Consensus 99 ~lk~~~~~d~~gg--~IWsiai~p~~~~l~Igc--ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGG--AIWSIAINPENTILAIGC--DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cCceeEEecCCCc--ceeEEEeCCccceEEeec--CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 9998888865443 566777777777777764 5897777777665543 2389999999999999999999
Q ss_pred CCcEEEEEEcCCCceeEeec-----cCC-cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672 195 QGTIIRVFLVSEATKSYSFR-----RGT-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG 268 (337)
Q Consensus 195 dg~~i~vwd~~~~~~~~~~~-----~~~-~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~ 268 (337)
||. ||+||..+++.++..+ ... .+.-|++|.|-.|+. |++|...|+|++||-..+.... +....
T Consensus 175 Dg~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t----I~sgDS~G~V~FWd~~~gTLiq----S~~~h- 244 (691)
T KOG2048|consen 175 DGV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST----IASGDSAGTVTFWDSIFGTLIQ----SHSCH- 244 (691)
T ss_pred Cce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc----EEEecCCceEEEEcccCcchhh----hhhhh-
Confidence 995 7999999998776221 111 234589999998885 9999999999999987654321 10000
Q ss_pred ccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeee
Q 019672 269 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREF 330 (337)
Q Consensus 269 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 330 (337)
.. + +.+++...+++++++++.|+.+..|...+.+.+ |......
T Consensus 245 ---~a---d----------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r 287 (691)
T KOG2048|consen 245 ---DA---D----------VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRR 287 (691)
T ss_pred ---hc---c----------eeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccc
Confidence 00 0 112222445689999999999999999887664 6665443
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=1.4e-18 Score=152.61 Aligned_cols=222 Identities=11% Similarity=0.186 Sum_probs=145.3
Q ss_pred CCceEEEEECCCCCE----------EEEEEcCC-ceeEEEEcCCe---EEEEE-CCeEEEEECCCCee-------eeeec
Q 019672 73 SPRRLCLFNTTTGTA----------LRELNFLT-SILAVRLNKKR---LVIVL-REKTYIYDANTLAI-------LDTID 130 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~----------~~~~~~~~-~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~-------~~~~~ 130 (337)
..+.|.|||..+..- -..+..+. .=.+++|++.. ++.+. |++|.+||+..... ...+.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~ 224 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS 224 (422)
T ss_pred CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence 478999999764321 11333333 36677887542 33333 78999999965322 22334
Q ss_pred CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC--Ccc-----cccCceEEEEeCC-CCCEEEEEeCCCcEEEEE
Q 019672 131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--LHS-----HCEAPLAAIVLSS-NGMYIATASEQGTIIRVF 202 (337)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~--~~~-----~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vw 202 (337)
.+.....-+++.+.. ..++++++ .|+.+.|||+++ .+. .|.++|+|++|+| ++..|||||.|++ +++|
T Consensus 225 ~h~~~VeDV~~h~~h-~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~Lw 300 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLH-EDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALW 300 (422)
T ss_pred cCCcceehhhccccc-hhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEe
Confidence 444444445555532 34667777 599999999995 222 2448999999999 6778999999998 5999
Q ss_pred EcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcc-----cc-cc-ccccccc
Q 019672 203 LVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT-----SS-IL-GSILPES 274 (337)
Q Consensus 203 d~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~-----~~-~~-~~~~~~~ 274 (337)
|+++.. ++..+. .|...|.+|.|||+.. +.||+++.|+.++|||+..-.+....+.. .- |+ ++.-.+.
T Consensus 301 DlRnL~~~lh~~e--~H~dev~~V~WSPh~e--tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV 376 (422)
T KOG0264|consen 301 DLRNLNKPLHTFE--GHEDEVFQVEWSPHNE--TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV 376 (422)
T ss_pred echhcccCceecc--CCCcceEEEEeCCCCC--ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence 999864 456664 3467899999999987 69999999999999999875443321100 00 00 1111111
Q ss_pred ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
..--|.+.. .-.|++++.|+.++||++.
T Consensus 377 ~DfsWnp~e-------------PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 377 SDFSWNPNE-------------PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccCCCCC-------------CeEEEEecCCceEEEeecc
Confidence 122344433 2457789999999999985
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5e-19 Score=155.97 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=158.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-- 83 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-- 83 (337)
+++|.+++-+|+|.+|++|+..+ +.+|.+.+|+++..++.|--.+.++.|..+...+++++ .|+.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-----kDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-----KDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-----CCccEEEEEEEee
Confidence 46799999999999999997776 69999999998766544433344444555444455553 69999999853
Q ss_pred -------CCCEEEEEEcCC-ceeEEEEcCC----eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672 84 -------TGTALRELNFLT-SILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 84 -------~~~~~~~~~~~~-~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (337)
+-++++.+..+. +|+++..... +++.++ |.++++||+..+.++.++..+. .+.++..+|-+..+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~---si~av~lDpae~~~ 232 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS---SIKAVALDPAERVV 232 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC---cceeEEEcccccEE
Confidence 234556665555 8999887543 445555 9999999999999998886643 35666777777777
Q ss_pred EEcCCCCccEEEEEEccCCc---c------------------ccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672 151 AVPASTTKGSVLVYNVMELH---S------------------HCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 207 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~---~------------------~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~ 207 (337)
..++ .+|.|.+.++.... . .|+ .+|+|++++-||++|++|+.||. ++|||+.+.
T Consensus 233 yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~S~ 309 (476)
T KOG0646|consen 233 YIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIYSK 309 (476)
T ss_pred EecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecchH
Confidence 7766 59999998875432 0 012 48999999999999999999998 589999999
Q ss_pred ceeEeeccCCcceeEEEEEeecCCC
Q 019672 208 TKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 208 ~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
++++++.. ..++|+.+.+.|=.+
T Consensus 310 Q~iRtl~~--~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 310 QCIRTLQT--SKGPVTNLQINPLER 332 (476)
T ss_pred HHHHHHhh--hccccceeEeecccc
Confidence 99888752 356788888865433
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.2e-19 Score=163.82 Aligned_cols=214 Identities=13% Similarity=0.159 Sum_probs=158.6
Q ss_pred CCceEEEEECCCCCE------EEEEEcCCc-eeEEEE--cCCeEEEEE-CCeEEEEECCCC--eeeeeecCCCCCceEEE
Q 019672 73 SPRRLCLFNTTTGTA------LRELNFLTS-ILAVRL--NKKRLVIVL-REKTYIYDANTL--AILDTIDTVPNLKGLCA 140 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~------~~~~~~~~~-v~~i~~--~~~~~~v~~-d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~ 140 (337)
.|+.|++|+...... +.+++++.. |.++.+ +.+.++.++ |-+|++|+...+ -...++.+|.+ .+-|
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D--YVkc 122 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD--YVKC 122 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc--hhee
Confidence 699999999865432 445555543 555544 344455555 889999998765 34556666655 4556
Q ss_pred Eee-CCCccEEEEcCCCCccEEEEEEccCCcc--c--------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 141 FSP-SLNACFLAVPASTTKGSVLVYNVMELHS--H--------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 141 ~~~-~~~~~~la~~~~~~dg~v~i~d~~~~~~--~--------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
+++ .+++.++|++| -|+.|++||+.++.. + +..+|.+++.++.|..|++|+..+- +|+||
T Consensus 123 la~~ak~~~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~-lr~wD 199 (735)
T KOG0308|consen 123 LAYIAKNNELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD-LRLWD 199 (735)
T ss_pred eeecccCceeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc-eEEec
Confidence 665 56777888888 599999999997632 1 2267999999999999999999985 79999
Q ss_pred cCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccccc
Q 019672 204 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD 283 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 283 (337)
-++++++-.++ | |...|.+|..++||. .++++|.||+|++|||..+.... .+.- ....+|+...
T Consensus 200 prt~~kimkLr-G-HTdNVr~ll~~dDGt---~~ls~sSDgtIrlWdLgqQrCl~----------T~~v-H~e~VWaL~~ 263 (735)
T KOG0308|consen 200 PRTCKKIMKLR-G-HTDNVRVLLVNDDGT---RLLSASSDGTIRLWDLGQQRCLA----------TYIV-HKEGVWALQS 263 (735)
T ss_pred cccccceeeee-c-cccceEEEEEcCCCC---eEeecCCCceEEeeeccccceee----------eEEe-ccCceEEEee
Confidence 99999998886 4 466799999999999 99999999999999998765432 1111 1123676644
Q ss_pred ceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 284 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
.+.-..+++|+.||.++.-++...
T Consensus 264 ----------~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 264 ----------SPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ----------CCCcceEEecCCCCcEEecccCCc
Confidence 223378999999999998888653
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.3e-18 Score=153.17 Aligned_cols=216 Identities=15% Similarity=0.184 Sum_probs=155.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.|-..|.+++.++||++||+|.-+. +.||+.++.+.+..... +.+..+++-..++-+...+ .|++|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee-------cCCceEEEe
Confidence 4667899999999999999998876 58999999987766544 3444455544455554444 599999999
Q ss_pred CCCCCEEEE-EEcCCceeEEEE-cCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 82 TTTGTALRE-LNFLTSILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 82 ~~~~~~~~~-~~~~~~v~~i~~-~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
+.....+.+ +.|+..|.+|.. +..+.+.++ |.++++|++.....+ .+..+......+++-. ..++++++ .
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~In---~~HfvsGS--d 346 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAFIN---DEHFVSGS--D 346 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeCCCCCeeeEEEec---ccceeecc--C
Confidence 987666655 456667888865 445555554 899999999654332 2333332223333332 22677776 5
Q ss_pred ccEEEEEEccCCccccc-----------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc----eeEeeccC
Q 019672 158 KGSVLVYNVMELHSHCE-----------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----KSYSFRRG 216 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~~-----------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~----~~~~~~~~ 216 (337)
+|.|.+|++.+.+.++. ..|++++..|...++|+||.+|. +|+|-+.+|- .++.+.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls-- 423 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS-- 423 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence 99999999988776532 26899999999999999999997 6999998883 333332
Q ss_pred CcceeEEEEEeecCCCcccEEEEE
Q 019672 217 TYPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 217 ~~~~~i~~l~fs~dg~~~~~las~ 240 (337)
-..-|++|+|+++|+ ++++|
T Consensus 424 -~~GfVNsl~f~~sgk---~ivag 443 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGK---RIVAG 443 (479)
T ss_pred -cccEEEEEEEccCCC---EEEEe
Confidence 244599999999999 77777
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=3.1e-18 Score=150.54 Aligned_cols=236 Identities=12% Similarity=0.133 Sum_probs=158.0
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEcCCc-eEEEeCCCCcE------------EEEEeeCCEEEEEEccCCCEEEEEeCCCCC
Q 019672 5 SSSYPVFFVSFNQDNSG-FALSTKDG-FKIFDSSTGRL------------CYERAVGAFSIVEMLYSSSLLAIVGAGEQP 70 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~-la~g~~~g-~~vw~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 70 (337)
.|.++|+.++.-|+... +|+++..+ +.|||..+..- ....+...-.-+.+.....+..+.++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~---- 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS---- 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc----
Confidence 46778888999988866 45566655 69999654311 11112121111233333344444443
Q ss_pred CCCCceEEEEECCCCCE-------EEEEE-cCCceeEEEEcCC---eEEEEE-CCeEEEEECCC--CeeeeeecCCCCCc
Q 019672 71 SLSPRRLCLFNTTTGTA-------LRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANT--LAILDTIDTVPNLK 136 (337)
Q Consensus 71 ~~~d~~v~iwd~~~~~~-------~~~~~-~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~--~~~~~~~~~~~~~~ 136 (337)
.|.+|++||+..... ...+. +...|.+++|++. .+..++ |+.+.|||+++ .+..+....+..
T Consensus 198 --~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~-- 273 (422)
T KOG0264|consen 198 --DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA-- 273 (422)
T ss_pred --CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC--
Confidence 699999999865432 22233 3347888888653 344444 78999999995 444445554444
Q ss_pred eEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 019672 137 GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 137 ~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~ 208 (337)
.+.+++++|- +..||+++ .|++|.+||+++.+.. |...|.+|.|||. .+.||+++.|+++ .|||+..-.
T Consensus 274 ~vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig 350 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIG 350 (422)
T ss_pred ceeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE-EEEeccccc
Confidence 4556666553 45667766 5999999999987642 4488999999995 4589999999985 799996422
Q ss_pred eeE------------eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 209 KSY------------SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 209 ~~~------------~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
..+ -|..+.|.+.|..+.|+|+..- .+++.++|+.++||+...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW--~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW--TIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCe--EEEEecCCceEEEeeccc
Confidence 221 2555667888999999999883 688889999999999763
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.3e-18 Score=154.20 Aligned_cols=235 Identities=17% Similarity=0.174 Sum_probs=171.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEE-EEEeCCCC------------
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLL-AIVGAGEQ------------ 69 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~g~~------------ 69 (337)
+|.+.|+|++..|.|.+||+|+++| ++||.+.+|+++...+. ..+.++++.+.++.- +.++.+.+
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~ 477 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRL 477 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchh
Confidence 6889999999999999999999998 59999999999887654 445666666555322 12222111
Q ss_pred --------------CCCCCceEEEEECCCCC-----EEEEEEcCCceeEEEEcCCe--EEEEE----CCeEEEEECCCCe
Q 019672 70 --------------PSLSPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDANTLA 124 (337)
Q Consensus 70 --------------~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~ 124 (337)
....+..+..|.-...+ .-..+.+..+|..+.|+.++ ++++. ...|.|+++...+
T Consensus 478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~ 557 (733)
T KOG0650|consen 478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK 557 (733)
T ss_pred hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence 12346678888654211 12356778899999998654 44444 2489999997765
Q ss_pred eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEE
Q 019672 125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTII 199 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i 199 (337)
.+.-|... ...+.+..++|...+++++. ...|+|||+..+..+.+ ..|..++.+|.|.-|+.|+.|+.+
T Consensus 558 sQ~PF~ks--kG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~- 631 (733)
T KOG0650|consen 558 SQSPFRKS--KGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM- 631 (733)
T ss_pred ccCchhhc--CCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee-
Confidence 54444322 22355667777777877775 57899999988665543 679999999999999999999985
Q ss_pred EEEEcCCCcee-EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 200 RVFLVSEATKS-YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 200 ~vwd~~~~~~~-~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
..+|+.-.... ++++ +|...+++|+|++.-. ++|+|+.||++.||-
T Consensus 632 ~WfDldlsskPyk~lr--~H~~avr~Va~H~ryP---Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYP---LFASGSDDGTVIVFH 678 (733)
T ss_pred EEEEcccCcchhHHhh--hhhhhhhhhhhccccc---eeeeecCCCcEEEEe
Confidence 58898766443 4443 3466799999999988 999999999999995
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.6e-17 Score=150.19 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=178.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE----EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL----CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
-+.+|++++|+.+.++||++-.+| +.+||+.+.=. ++....+.+..++++ .+..+.. .+ .++.|.-|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS-~g------~sg~i~Ew 95 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFS-SG------LSGSITEW 95 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEe-ec------CCceEEEE
Confidence 467899999999999999998887 59999987621 222223445555555 2333333 33 38999999
Q ss_pred ECCCCCEEEEEEcCC-ceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNFLT-SILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
|+.+++++..+...+ .|.+++.++. .+.+.. ||.++.+++..++.............+++++++|++..++.++
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs-- 173 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS-- 173 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc--
Confidence 999999998887654 8999998764 444443 7778888888777665544444456789999999999888876
Q ss_pred CccEEEEEEccCCcccc-----c--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672 157 TKGSVLVYNVMELHSHC-----E--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 223 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~-----~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 223 (337)
.||.|++||+.++..++ . .-|.++.|-.++ .||+|.+-|+ |++||...|.+++.+.- +.+.|.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhccee
Confidence 59999999999887765 1 337888887775 6899999998 69999999999887753 466799
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+|+-++++. ++.+++-|+.|--|...+.+
T Consensus 250 ~Lav~~~~d---~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 250 ALAVADNED---RVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred EEEEcCCCC---eEEEccCCCceEEEEecCCc
Confidence 999999988 99999999998888776654
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.5e-17 Score=139.09 Aligned_cols=196 Identities=11% Similarity=0.129 Sum_probs=144.1
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEcCCce-EEEeCCCCcE------EE------EEe---eCC--EEEEEEccCCCEEEEE
Q 019672 4 QSSSYPVFFVSFNQ-DNSGFALSTKDGF-KIFDSSTGRL------CY------ERA---VGA--FSIVEMLYSSSLLAIV 64 (337)
Q Consensus 4 ~~~~~~v~~~~fs~-dg~~la~g~~~g~-~vw~~~~~~~------~~------~~~---~~~--~~~~~~~~~~~~~~~~ 64 (337)
.+|.+.|+++++.+ .|+++++|+.||. .|||++.-.. +. ..+ .|. +..+.+-+..+.+.+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36788999999987 6788999998885 9999875421 10 011 122 2223333334455444
Q ss_pred eCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC---e--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672 65 GAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---R--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGL 138 (337)
Q Consensus 65 ~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~---~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 138 (337)
+. -|.++++||..+-+....+++++.|..-+++|- + +++++ +-.|++-|+..|..-+++..|. .++
T Consensus 120 sS------FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr--~~v 191 (397)
T KOG4283|consen 120 SS------FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR--DGV 191 (397)
T ss_pred cc------ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc--Cce
Confidence 43 699999999999999889999988887776652 2 23333 5599999999999989987654 478
Q ss_pred EEEeeCCCccEEEEcCCCCccEEEEEEccCCc------------c--------cccCceEEEEeCCCCCEEEEEeCCCcE
Q 019672 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELH------------S--------HCEAPLAAIVLSSNGMYIATASEQGTI 198 (337)
Q Consensus 139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~------------~--------~~~~~i~~~~~s~dg~~lat~s~dg~~ 198 (337)
+++.++|...++.+.|+ .||.|++||++... . .|.+.|+.++|+.||.++++.+.|..
T Consensus 192 laV~Wsp~~e~vLatgs-aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r- 269 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGS-ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR- 269 (397)
T ss_pred EEEEeccCceeEEEecC-CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-
Confidence 88888887777665555 69999999997531 0 12278999999999999999999987
Q ss_pred EEEEEcCCCce
Q 019672 199 IRVFLVSEATK 209 (337)
Q Consensus 199 i~vwd~~~~~~ 209 (337)
+|+|+..+|+-
T Consensus 270 ~r~wn~~~G~n 280 (397)
T KOG4283|consen 270 IRVWNMESGRN 280 (397)
T ss_pred eEEeecccCcc
Confidence 69999998863
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=157.10 Aligned_cols=233 Identities=11% Similarity=0.120 Sum_probs=169.3
Q ss_pred eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-CEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCC
Q 019672 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANT 122 (337)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~ 122 (337)
..+...+++.++++.+..++ +|+.|++|+.... +....+. ....|.+++...+++++++ +++|.+|.+..
T Consensus 13 t~G~t~i~~d~~gefi~tcg-------sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCG-------SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCceEEEEEcCCCCEEEEec-------CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 34566667777778665554 4999999987554 3334444 5668999999988888888 88999999987
Q ss_pred Cee---eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeC
Q 019672 123 LAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASE 194 (337)
Q Consensus 123 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~ 194 (337)
++. +..+.. +...++ +++++.++|.++ .|-.|++.++.+... .|+++|.++.|+|+|++||+.+-
T Consensus 86 ~~~~~iL~Rftl---p~r~~~--v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 86 GEEDTILARFTL---PIRDLA--VSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred CCccceeeeeec---cceEEE--EecCCcEEEeec--CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 754 333332 333444 456677999887 488899998876543 25599999999999999999999
Q ss_pred CCcEEEEEEcCCCceeEeeccCC-----c-ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672 195 QGTIIRVFLVSEATKSYSFRRGT-----Y-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG 268 (337)
Q Consensus 195 dg~~i~vwd~~~~~~~~~~~~~~-----~-~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~ 268 (337)
||+ +++||++++...+.+..-. . ...+..++|+|+|. .||+...|++|++|+.......- .+..
T Consensus 159 dG~-v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---~la~~~~d~~Vkvy~r~~we~~f------~Lr~ 228 (933)
T KOG1274|consen 159 DGK-VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG---TLAVPPVDNTVKVYSRKGWELQF------KLRD 228 (933)
T ss_pred Cce-EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC---eEEeeccCCeEEEEccCCceehe------eecc
Confidence 998 5999999998876663211 1 22367899999987 79999999999999987654422 1111
Q ss_pred ccccc-cceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 269 SILPE-SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 269 ~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
..... .....|+|. +.||++++.||.|.+|++++
T Consensus 229 ~~~ss~~~~~~wsPn--------------G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPN--------------GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCC--------------CcEEeeeccCCcEEEEeccc
Confidence 11111 123355554 39999999999999999984
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.5e-17 Score=140.27 Aligned_cols=232 Identities=11% Similarity=0.136 Sum_probs=163.6
Q ss_pred CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCe----EEEEE-CCeEEEEEC
Q 019672 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR----LVIVL-REKTYIYDA 120 (337)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~----~~v~~-d~~i~i~d~ 120 (337)
|...+.+++-+..++ ++|+ .|.+|+|||+++...+..+- +.+.|+++.|.+.. ++.+. ||.|.+|+.
T Consensus 42 H~~sitavAVs~~~~--aSGs-----sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 42 HAGSITALAVSGPYV--ASGS-----SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccceeEEEecceeE--eccC-----CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 333444444444444 4443 69999999999988887654 55689999997654 55555 899999999
Q ss_pred CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCC
Q 019672 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQG 196 (337)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg 196 (337)
..-+.+.++..+.+. +..++.+|.+.+-.+.| .|+.+++||+-+++.... ..-+.+.|+|.|.+++.++.++
T Consensus 115 ~~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQ--VTDLSIHPSGKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred CCeEEeeeecccccc--cceeEecCCCceEEEEc--CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence 999999999877654 66666677676655666 499999999998875422 3445599999999999999886
Q ss_pred cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccc--c
Q 019672 197 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE--S 274 (337)
Q Consensus 197 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~--~ 274 (337)
|-||.+.+-....++. .+..+.|+.|-..+ .|++|.+|+.|.+||.+...... .++.+ +
T Consensus 191 --i~i~q~d~A~v~~~i~---~~~r~l~~~~l~~~----~L~vG~d~~~i~~~D~ds~~~~~----------~~~AH~~R 251 (362)
T KOG0294|consen 191 --IDIYQLDNASVFREIE---NPKRILCATFLDGS----ELLVGGDNEWISLKDTDSDTPLT----------EFLAHENR 251 (362)
T ss_pred --EEEEecccHhHhhhhh---ccccceeeeecCCc----eEEEecCCceEEEeccCCCccce----------eeecchhh
Confidence 5799998877655443 23457888886444 79999999999999987533211 11111 1
Q ss_pred ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672 275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 319 (337)
Q Consensus 275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~ 319 (337)
+-.+... ..++..+|+++++||.|.+|.++.++-
T Consensus 252 VK~i~~~-----------~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 252 VKDIASY-----------TNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred eeeeEEE-----------ecCCceEEEEeccCceEEEEEcccccc
Confidence 1111111 123447999999999999999988843
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=147.44 Aligned_cols=267 Identities=11% Similarity=0.134 Sum_probs=183.6
Q ss_pred eEEEeCCCCcEEEEEeeCCEEEE-EE-ccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE-EEEcCCceeEEEEcCCe
Q 019672 30 FKIFDSSTGRLCYERAVGAFSIV-EM-LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNFLTSILAVRLNKKR 106 (337)
Q Consensus 30 ~~vw~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~ 106 (337)
+.+||+.+|..+..........- .. .-...+++...- ....|.+|.+....... .+-.+++|.++.-++.+
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~------~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQL------KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhhchhheeeecc------cCccccccccCchhhhhhhcccccceeeeecCCCc
Confidence 68999999987766543311110 00 111233333322 35689999987665544 45567899999988876
Q ss_pred EEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc---------c---
Q 019672 107 LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---------S--- 171 (337)
Q Consensus 107 ~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~---------~--- 171 (337)
.++.. .+.+++|.+.+|.++..+..|. ..+.++.++.|+.+++++| .||.|.+|++.+.- .
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceee
Confidence 55544 6899999999999998886554 4688999999999999998 59999999875321 1
Q ss_pred --cccCceEEEEeCCC--CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672 172 --HCEAPLAAIVLSSN--GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH 247 (337)
Q Consensus 172 --~~~~~i~~~~~s~d--g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~ 247 (337)
.|+-+|+.+...+. ..+|+|+|.|.+ +|+||+..|.++.++. .+..|.+++.+|-+. .+..|+.+|.|.
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~---~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAER---VVYIGTEEGKIF 242 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEccccc---EEEecCCcceEE
Confidence 13478888888765 358999999987 7999999999988774 355799999999999 999999999999
Q ss_pred EEecCCCcccCC-C-Ccccccccccccccceeeccccccee--eeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 248 VFSPGFAINQRR-G-GRTSSILGSILPESVNEVLDPADHHV--LRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 248 iw~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
+.++.+....+. . ++....-+.. +-...++.. .+..++-..++..|++|+.||+|.+|++....|-
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~-------~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQ-------INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred eeehhcCCcccccccccccccccce-------eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 998865442111 0 0000000000 000001110 1122233456789999999999999999776665
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=7.6e-18 Score=155.37 Aligned_cols=236 Identities=13% Similarity=0.208 Sum_probs=171.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCC---EEEEEeCCCCCCCCCceEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~v~iw 80 (337)
.+...+++++.+|+|++||+|...| ++||++...+.+...+.|+..+.++.|+.. .-.+.+++ .|+-|.|+
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-----rdRlIHV~ 531 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-----RDRLIHVY 531 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-----CCceEEEE
Confidence 4567899999999999999998877 699999887765544445555555544432 12334442 69999999
Q ss_pred ECCCCC-EEEEEE-cCCceeEEEEcCCe----EEEEECCeEEEEECCCC-eeeeeecCC---CCCceEEEEeeCCCccEE
Q 019672 81 NTTTGT-ALRELN-FLTSILAVRLNKKR----LVIVLREKTYIYDANTL-AILDTIDTV---PNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 81 d~~~~~-~~~~~~-~~~~v~~i~~~~~~----~~v~~d~~i~i~d~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~l 150 (337)
|...+- ++.++. |.+.|++|+|..++ ++.++.++...|+.... .....+..+ .....++.+..+|...++
T Consensus 532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 987653 445554 45689999985432 33444333334444321 011111111 122456778888888899
Q ss_pred EEcCCCCccEEEEEEccCCcccc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 151 AVPASTTKGSVLVYNVMELHSHC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
+++. .|..|+|||+.+++... ++..-.+..+|.|.||||.+.|.+ +.++|..+|+++.++. | |...|
T Consensus 612 ~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~-G-HsE~V 686 (1080)
T KOG1408|consen 612 VTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMT-G-HSEAV 686 (1080)
T ss_pred EEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhc-C-cchhe
Confidence 9888 69999999999987653 277888999999999999999998 5899999999998875 3 35569
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
+.|.|++|-+ .|++.+.||.|.||.+..
T Consensus 687 TG~kF~nDCk---HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDCK---HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeecccch---hheeecCCceEEEEECch
Confidence 9999999999 999999999999999875
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.4e-17 Score=134.53 Aligned_cols=235 Identities=14% Similarity=0.175 Sum_probs=163.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc---EEEEEe--eCCEEEEEEccC--CCEEEEEeCCCCCCCCCc
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---LCYERA--VGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~---~~~~~~--~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~ 75 (337)
+.|++.|-.+..+--|++||+++.|+ ++||...+.. ++.++. .+++-.+.+++. +++++.++ -|+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------YDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------YDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------cCc
Confidence 35667777788888899999998887 6999987653 344443 356777777774 45555554 599
Q ss_pred eEEEEECCCCCEEEEEE---cCCceeEEEEcCC--eEE--EEE-CCeEEEEECCCC-e-eeeeecCCCCCceEEEEeeCC
Q 019672 76 RLCLFNTTTGTALRELN---FLTSILAVRLNKK--RLV--IVL-REKTYIYDANTL-A-ILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~--~~~--v~~-d~~i~i~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 145 (337)
+|.||.-++++-...+. |...|.+|++.|. +++ ++. ||+|.|.+.+.. . ....+. ..++.++.+++..|
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswap 159 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAP 159 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-hccccccceeeecC
Confidence 99999999886544433 3458999998654 333 333 999999988654 1 111121 12345565555544
Q ss_pred C---c-----------cEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCCC----CEEEEEeCCCcEEE
Q 019672 146 N---A-----------CFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSNG----MYIATASEQGTIIR 200 (337)
Q Consensus 146 ~---~-----------~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~dg----~~lat~s~dg~~i~ 200 (337)
. + ..|+++|. |..|+||+..+..- .|..-|+.++|.|.- .+||++|+||++|
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGc--Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi- 236 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGC--DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI- 236 (299)
T ss_pred cCCCccccccCcccccceeeccCC--ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE-
Confidence 3 2 45888885 89999999887431 255889999999963 4799999999975
Q ss_pred EEEcCCC--ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 201 VFLVSEA--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 201 vwd~~~~--~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
||-.... +-..++.. ..+..++.++||+.|. +|++++.|+.|.+|.-..
T Consensus 237 Iwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCcccccccc-cCCcceEEEEEecccc---EEEEecCCcEEEEEEeCC
Confidence 9976522 11122211 1355699999999999 999999999999997543
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=140.50 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=178.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.|-++|+++.|+|..+.|++|+.|+ +++||...-. ..+. .+.+.+..+.+.+.+.+++... ...++++
T Consensus 170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-------dHp~~rl 242 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-------DHPTLRL 242 (430)
T ss_pred hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-------CCCceeE
Confidence 3668999999999999999999876 6999976532 1111 1235667777766667665443 3689999
Q ss_pred EECCCCCEEEEE----EcCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 80 FNTTTGTALREL----NFLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 80 wd~~~~~~~~~~----~~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
||+.+-++...- .+...|+++.+++..-+-+ + ||.|++||--..+.+.++....+...+|+.-+..++.++.+
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 999998776543 3455899999987654333 3 99999999888888888866556667888888889999999
Q ss_pred cCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 153 PASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
+| .|..|++|.+.+++.+.. .--+...|+....++..-.+....+.-||.+++..+..+..+| ...+
T Consensus 323 SG--~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~ 399 (430)
T KOG0640|consen 323 SG--KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAV 399 (430)
T ss_pred cC--CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCc
Confidence 98 499999999999887643 1234456777777777665544445789999998877776664 6678
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVFSP 251 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l 251 (337)
..+.-||.+. -+.++|.|..+++|--
T Consensus 400 R~i~HSP~~p---~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 400 RWIVHSPVEP---AFMTCSDDFRARFWYR 425 (430)
T ss_pred eEEEeCCCCC---ceeeecccceeeeeee
Confidence 9999999999 9999999999999963
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1e-16 Score=150.22 Aligned_cols=224 Identities=14% Similarity=0.148 Sum_probs=165.4
Q ss_pred CCeEEEEEcCCC-----CEEEEEcCCc-eEEEeCCCCcE-EEEE-------eeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672 8 YPVFFVSFNQDN-----SGFALSTKDG-FKIFDSSTGRL-CYER-------AVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 8 ~~v~~~~fs~dg-----~~la~g~~~g-~~vw~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (337)
.+|..++|..+- ..+++.-++. .+.|+..+... .+.. ....+..+++.+.+|+..+.. +
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-------S 468 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-------S 468 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec-------c
Confidence 467777775422 3344444444 48999876543 2222 124456677778888765543 4
Q ss_pred CceEEEEECCCCCEEEEE----EcCCceeEEEEcC-CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672 74 PRRLCLFNTTTGTALREL----NFLTSILAVRLNK-KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~----~~~~~v~~i~~~~-~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (337)
.|+|.++|++.|-...++ .+..+|++++++. ++++++. +|-+.+||++...++..++....... +..+..
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~---iv~hr~ 545 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITG---IVYHRV 545 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcce---eeeeeh
Confidence 789999999999877777 5667999999975 3344433 89999999998888877765433222 222333
Q ss_pred ccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee
Q 019672 147 ACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 221 (337)
...+|.+- .|-.|.++|+.+.+.+ |.+.|+.++|||||++|++++.|++ ||+||+.++.++-.+.. ..+
T Consensus 546 s~l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~v---d~~ 619 (910)
T KOG1539|consen 546 SDLLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLLV---DSP 619 (910)
T ss_pred hhhhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEec---CCc
Confidence 33555554 4788999999988765 4589999999999999999999998 79999999999887743 456
Q ss_pred EEEEEeecCCCcccEEEEEeCC-CcEEEEe
Q 019672 222 IFSLSFGQSMQFQDILVATSSS-GSLHVFS 250 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~d-g~v~iw~ 250 (337)
..+|.|||+|. +||+...| .-|++|-
T Consensus 620 ~~sls~SPngD---~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSPNGD---FLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECCCCC---EEEEEEecCceEEEEE
Confidence 88999999999 99999999 5599996
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.3e-16 Score=134.75 Aligned_cols=281 Identities=10% Similarity=0.123 Sum_probs=188.9
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
..+|+..|+.++-......+.+++.|.. +||.+++++.+..+.+ +.+..+.+..+..+++..+| |.+..|
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG-------D~taHI 216 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG-------DETAHI 216 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC-------CcchHH
Confidence 3578899999988777677777777765 9999999998877654 45555555444444444443 888888
Q ss_pred EEC----CCCC------------------------------------EEEEEEcCC-ceeEEEE--cCCeEEEEE-CCeE
Q 019672 80 FNT----TTGT------------------------------------ALRELNFLT-SILAVRL--NKKRLVIVL-REKT 115 (337)
Q Consensus 80 wd~----~~~~------------------------------------~~~~~~~~~-~v~~i~~--~~~~~~v~~-d~~i 115 (337)
|.. +..+ +++.+..+. .|.+..| ..+.++.++ |.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 861 1100 122222222 3333333 345556666 9999
Q ss_pred EEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc------ccccCceEEEEeCCCCCEE
Q 019672 116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH------SHCEAPLAAIVLSSNGMYI 189 (337)
Q Consensus 116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~------~~~~~~i~~~~~s~dg~~l 189 (337)
.+||++++++++.+..+.+. +.-.+.+|...++++++ .|-+.++||.+..- ..|+..|+++.|..|. .+
T Consensus 297 nlwDVEtge~v~~LtGHd~E--LtHcstHptQrLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSE--LTHCSTHPTQRLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred eeeeeccCceeccccCcchh--ccccccCCcceEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence 99999999999999877664 33334566666777776 48999999987432 2355899999999885 58
Q ss_pred EEEeCCCcEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672 190 ATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG 268 (337)
Q Consensus 190 at~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~ 268 (337)
++||+|.+ |+|||+++.. .+.+++. ..+++.++.|..++ .+|.--++..|++||+....-++- ++++. .
T Consensus 372 VSgSDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~---iIAiPhDNRqvRlfDlnG~RlaRl-PrtsR-q- 441 (481)
T KOG0300|consen 372 VSGSDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHP---IIAIPHDNRQVRLFDLNGNRLARL-PRTSR-Q- 441 (481)
T ss_pred eecCCCce-EEEeeeccccCcceeeec---CCccceeEeecCCc---eEEeccCCceEEEEecCCCccccC-Ccccc-c-
Confidence 99999987 6999999875 4556643 35688999998888 888888888899999986544331 11100 0
Q ss_pred ccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 269 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 269 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
..---.+.+.|... +....|++.+.|..+.-|++..-
T Consensus 442 gHrRMV~c~AW~ee------------hp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEE------------HPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeeecccc------------CcccccccccccceeeeeEeccc
Confidence 00001123445432 22266889999999999988654
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=1e-16 Score=147.94 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=166.0
Q ss_pred EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCC----eE-EEEE-CCeEEEEECC
Q 019672 49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKK----RL-VIVL-REKTYIYDAN 121 (337)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~----~~-~v~~-d~~i~i~d~~ 121 (337)
+..+++.++...++ +|. .-|+++|+|+..-+....++. .++|.++.++.- .+ +.++ |.-|+|||+.
T Consensus 462 ~R~~~vSp~gqhLA--sGD-----r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLA--SGD-----RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred eEEEEECCCcceec--ccC-----ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 44555555555544 332 347999999998887777764 458999998642 23 3333 7789999995
Q ss_pred C-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC----Ccc-------cccCceEEEEeCCCCCEE
Q 019672 122 T-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME----LHS-------HCEAPLAAIVLSSNGMYI 189 (337)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~----~~~-------~~~~~i~~~~~s~dg~~l 189 (337)
. ..+++++..|......+-|+.++-+..++++|. |..|. |+... +.. ..+..+..+++.|..+++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGA--Dksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA--DKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccC--chhhh-eehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 4 456677776555444444555555577888884 66544 33322 211 112779999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCceeEeeccCCcc-eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672 190 ATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG 268 (337)
Q Consensus 190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~ 268 (337)
++++.|.. |||||+++|+..+.|+..+.. +..--+...|.|- |||+...|.++.++|.-.++-..
T Consensus 612 ~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi---Y~atScsdktl~~~Df~sgEcvA---------- 677 (1080)
T KOG1408|consen 612 VTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI---YLATSCSDKTLCFVDFVSGECVA---------- 677 (1080)
T ss_pred EEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCcc---EEEEeecCCceEEEEeccchhhh----------
Confidence 99999987 799999999999999643322 3455578899999 99999999999999987665432
Q ss_pred ccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 269 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 269 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
...+|.+++.-+.|.+|-+.|++.+.||.|.+|.+..
T Consensus 678 -----------~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 678 -----------QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -----------hhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 2233445555666677789999999999999999965
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.5e-17 Score=132.45 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=157.8
Q ss_pred EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC---EEEEEEc-CCceeEEEEc-CC-eEEE--EE-CCeEEEEECCCC
Q 019672 53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELNF-LTSILAVRLN-KK-RLVI--VL-REKTYIYDANTL 123 (337)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~---~~~~~~~-~~~v~~i~~~-~~-~~~v--~~-d~~i~i~d~~~~ 123 (337)
.+.|.+..++.++. |++|+|+..+.+. ++.++.. .+||..+.|. |. +-++ +. |++|.||.-.++
T Consensus 18 ~lDyygkrlATcsS-------D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g 90 (299)
T KOG1332|consen 18 QLDYYGKRLATCSS-------DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG 90 (299)
T ss_pred hhhhhcceeeeecC-------CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence 45566777777764 9999999987654 4556654 4599999984 33 3333 33 999999998777
Q ss_pred ee--eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC-c-------ccccCceEEEEeCCC---C----
Q 019672 124 AI--LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-H-------SHCEAPLAAIVLSSN---G---- 186 (337)
Q Consensus 124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~-~-------~~~~~~i~~~~~s~d---g---- 186 (337)
+- ......+......++++|+.-+..||++++ ||.|.|.+.+.. . ..|+-.|++++|.|- |
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasS--DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS--DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeC--CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 32 222333444445567788888888998884 999999887654 1 124577999999986 6
Q ss_pred -------CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC-cccEEEEEeCCCcEEEEecCCCcccC
Q 019672 187 -------MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ-FQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 187 -------~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~-~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
+.||+|+.|.. ++||+..+++-+.+-....|..-|..++|.|.-. -..+||++|.||+|-||-.+...++-
T Consensus 169 ~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred cCcccccceeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 67999999986 6999998874322111223455689999998741 11279999999999999877443322
Q ss_pred CCCcccccccccccccc-eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 259 RGGRTSSILGSILPESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 259 ~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
+ ...+ ...|..+ .-.|++. ++.|.+++.|+.+.+|.
T Consensus 248 k----~tll-~~f~~~~w~vSWS~s--------------Gn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 248 K----KTLL-EEFPDVVWRVSWSLS--------------GNILAVSGGDNKVTLWK 284 (299)
T ss_pred c----cccc-ccCCcceEEEEEecc--------------ccEEEEecCCcEEEEEE
Confidence 1 1111 1123222 2345444 38899999999999994
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=1.4e-17 Score=148.17 Aligned_cols=227 Identities=11% Similarity=0.109 Sum_probs=173.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--e--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--V--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
.++-|+++...|||+.|++|++-. +.|||+..-......+ . .....+++.++.+.... . +.|+.|.||
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs-c------csdGnI~vw 536 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS-C------CSDGNIAVW 536 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee-e------ccCCcEEEE
Confidence 456689999999999999998854 6999987654433222 2 22233445555554333 3 259999999
Q ss_pred ECCCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 81 NTTTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 81 d~~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
|+.....++.+..+. .+.+|.+++++ +...+ |++++.||++.++.+.+.+.. ..+.++...|.+.++|++=
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---SQIfSLg~cP~~dWlavGM-- 611 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---SQIFSLGYCPTGDWLAVGM-- 611 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---hhheecccCCCccceeeec--
Confidence 999999999887655 68888888654 55554 999999999998766554432 3477788888888999875
Q ss_pred CccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 157 TKGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
+.+.|.|........ +|++-|.++.|.+-|+++++.+.|.- +..|.+.-|..+...+. ...|.|+..|.|.+
T Consensus 612 ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqskE---~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKE---SSSVLSCDISFDDK 687 (705)
T ss_pred ccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeeccc---cCcceeeeeccCce
Confidence 578888887765432 24488999999999999999999974 68999999998877643 45799999999999
Q ss_pred cccEEEEEeCCCcEEEEec
Q 019672 233 FQDILVATSSSGSLHVFSP 251 (337)
Q Consensus 233 ~~~~las~s~dg~v~iw~l 251 (337)
++++||.|....||.+
T Consensus 688 ---yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 688 ---YIVTGSGDKKATVYEV 703 (705)
T ss_pred ---EEEecCCCcceEEEEE
Confidence 9999999999988875
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=9.2e-18 Score=156.04 Aligned_cols=234 Identities=12% Similarity=0.107 Sum_probs=158.6
Q ss_pred eEEEEEcC-CCCEEEEEcCCce-EEEeCCC---CcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 10 VFFVSFNQ-DNSGFALSTKDGF-KIFDSST---GRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 10 v~~~~fs~-dg~~la~g~~~g~-~vw~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+..++|++ +.++||+++.+|+ .+||+.. .++++....| .+-.+++......++ ++|+ .|++|++||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~il-iSGS-----QDg~vK~~Dl 163 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNIL-ISGS-----QDGTVKCWDL 163 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEE-EecC-----CCceEEEEee
Confidence 34456764 4567999998885 9999976 3444333333 333444322223333 3442 6999999999
Q ss_pred CCCCEEEEEEcCC-ceeEEEEcC---CeEEEEE-CCeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 83 TTGTALRELNFLT-SILAVRLNK---KRLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 83 ~~~~~~~~~~~~~-~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
+..+...++...+ .|++++|++ +.++.+. .|.+.+||++.... ...+..| ...+.++.++|++.+||++|
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhPnr~~lATGG-- 239 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHPNREWLATGG-- 239 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecCCCceeeecC--
Confidence 9888777665554 799999975 3444444 57999999987643 3344433 34577888899999999999
Q ss_pred CccEEEEEEccCCccc--c---c-CceEEEEeCCCCC-EEEEEeC-CCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 157 TKGSVLVYNVMELHSH--C---E-APLAAIVLSSNGM-YIATASE-QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~--~---~-~~i~~~~~s~dg~-~lat~s~-dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
.|+.|+|||+.+.+.. + + .||.+|.|-|+-. .||+++. +.+-|+|||++..-..+..-. .|...++.++|-
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWD 318 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-ccCccccceecc
Confidence 4999999999866542 2 2 8999999999765 5776653 223479999987655443322 245568889997
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 229 QSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.... ..|.+++.||+|..-.++....
T Consensus 319 ~~d~--~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 319 SGDR--INLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred CCCc--eeeEeecCccHHHHhhhhcccC
Confidence 5333 3899999999985555444433
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=4.2e-16 Score=132.03 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=151.9
Q ss_pred eEEEEEcCCCCEEEEEcCC-ceEEEeCCCC--------c------EEEEEeeCC-EEEEEE-------ccCCCEEEEEeC
Q 019672 10 VFFVSFNQDNSGFALSTKD-GFKIFDSSTG--------R------LCYERAVGA-FSIVEM-------LYSSSLLAIVGA 66 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~-g~~vw~~~~~--------~------~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~ 66 (337)
.-.+.|+|||++|++-+.+ ++++|++..- . ..+....+. +...++ .++.++.+. +.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~-ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV-SS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee-cc
Confidence 5567999999998877764 5799986321 1 111111122 211111 123344443 33
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEEEc---CC---ceeEEEEcCCeE-EEEE-CCeEEEEEC-CCCeeeeeecC--C--C
Q 019672 67 GEQPSLSPRRLCLFNTTTGTALRELNF---LT---SILAVRLNKKRL-VIVL-REKTYIYDA-NTLAILDTIDT--V--P 133 (337)
Q Consensus 67 g~~~~~~d~~v~iwd~~~~~~~~~~~~---~~---~v~~i~~~~~~~-~v~~-d~~i~i~d~-~~~~~~~~~~~--~--~ 133 (337)
.+.-|++||.-+|+..+.+.. -. ...++.|++++- +.++ ...|++||+ +.+.-.....+ + .
T Consensus 131 ------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 131 ------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred ------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 589999999999998876532 22 345688888753 3344 779999999 55532222211 1 1
Q ss_pred C-CceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 134 N-LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 134 ~-~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
. ..-+.+++++|-.. .+|++++ ...+-||.-..+... |.+.|+.+.|.+||+.|.+|+....-|-.||++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY--~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSY--GQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCcceeeecc--cceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 1 22345777777655 7787775 566777765555443 4589999999999999999997554577999975
Q ss_pred -CceeEeeccCCc--ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 207 -ATKSYSFRRGTY--PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 207 -~~~~~~~~~~~~--~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
++.+..+.++.. ...|. ....|+|+ +||+|+.||.|++||+++..+
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~-FDld~~~~---~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRIL-FDLDPKGE---ILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ccchhhhhhhhccCccceEE-EecCCCCc---eeeccCCCccEEEEecCCCCC
Confidence 455666655433 12333 34458998 999999999999999988655
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=6.6e-16 Score=130.03 Aligned_cols=238 Identities=18% Similarity=0.211 Sum_probs=154.5
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC----cEEEEEeeCCEEEEE--EccCC--CEEEEEeCCCCCCCC
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG----RLCYERAVGAFSIVE--MLYSS--SLLAIVGAGEQPSLS 73 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~----~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~g~~~~~~ 73 (337)
++.|+.-|.++.|++-|+.+|+|+.|+ ++|||.... ...-....++-.+.. +++.. ..++.++ .
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-------~ 81 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-------Y 81 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-------c
Confidence 456778899999999999999998876 799996433 333333344444444 44332 4555555 4
Q ss_pred CceEEEEECCCC-------CEEE--EE-EcCCceeEEEEcCCeE--E--EEE-CCeEEEEECCCCe------eeeeec--
Q 019672 74 PRRLCLFNTTTG-------TALR--EL-NFLTSILAVRLNKKRL--V--IVL-REKTYIYDANTLA------ILDTID-- 130 (337)
Q Consensus 74 d~~v~iwd~~~~-------~~~~--~~-~~~~~v~~i~~~~~~~--~--v~~-d~~i~i~d~~~~~------~~~~~~-- 130 (337)
|++++||.-... +-+. ++ .-.+.|++|.|.|.++ . .+. ||.++||+..+.- +.+++.
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 999999975211 1111 22 2345899999987642 2 233 9999999875432 223332
Q ss_pred --CCCC-CceEEEEeeCCC---ccEEEEcCCC---CccEEEEEEccCCc-c--------cccCceEEEEeCCC----CCE
Q 019672 131 --TVPN-LKGLCAFSPSLN---ACFLAVPAST---TKGSVLVYNVMELH-S--------HCEAPLAAIVLSSN----GMY 188 (337)
Q Consensus 131 --~~~~-~~~~~~~~~~~~---~~~la~~~~~---~dg~v~i~d~~~~~-~--------~~~~~i~~~~~s~d----g~~ 188 (337)
++.. .....|+++++. .+++|.+... .-+.++||...... . .++.+|+.++|.|+ -.+
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 1111 122345555542 3467766520 12478999765433 1 13489999999995 347
Q ss_pred EEEEeCCCcEEEEEEcCCCc-----------------eeEeec-cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 189 IATASEQGTIIRVFLVSEAT-----------------KSYSFR-RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 189 lat~s~dg~~i~vwd~~~~~-----------------~~~~~~-~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
||+|+.|| |+||.++.-. .+..+. ...|.++|..+.|+-.|. .|+++++||.|++|.
T Consensus 242 lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt---iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 242 LAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT---ILSSTGDDGCVRLWK 316 (361)
T ss_pred EEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee---EEeecCCCceeeehh
Confidence 99999999 5999997311 011111 234577899999999999 999999999999998
Q ss_pred cC
Q 019672 251 PG 252 (337)
Q Consensus 251 l~ 252 (337)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 54
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.7e-18 Score=158.45 Aligned_cols=222 Identities=11% Similarity=0.109 Sum_probs=169.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.|...|.|+..-..++.+++|+.+.. .+|.+..-.-+..+.+ .++..+. ++..-..+..| ..+++|++||
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~--f~~~E~Llaag-----sasgtiK~wD 98 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT--FDTSERLLAAG-----SASGTIKVWD 98 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee--cCcchhhhccc-----ccCCceeeee
Confidence 45566788888677788888888764 6898654433333333 4444444 44433333333 3699999999
Q ss_pred CCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 82 TTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 82 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
++..+.++++..+- ++..+.|+|..-+.+. |..+.+||++...+.+.+..+ ...+-.+.+.|++.+++.++ +
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~--~~vv~~l~lsP~Gr~v~~g~--e 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH--TRVVDVLRLSPDGRWVASGG--E 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC--cceeEEEeecCCCceeeccC--C
Confidence 99999888876654 8999999998777644 889999999988888888764 44555667778899999988 5
Q ss_pred ccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 158 KGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 158 dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
|.+++|||+..++.. |+..+.++.|+|..-++++||.|++ +++||+++.+.+..... ....|.+++|+|++.
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPDGK 251 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCCce
Confidence 899999999888766 4488999999999999999999998 69999999888766532 245699999999998
Q ss_pred cccEEEEEeCC
Q 019672 233 FQDILVATSSS 243 (337)
Q Consensus 233 ~~~~las~s~d 243 (337)
.+++|-..
T Consensus 252 ---~~~~G~q~ 259 (825)
T KOG0267|consen 252 ---IVLSGEQI 259 (825)
T ss_pred ---eeecCchh
Confidence 77776555
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-18 Score=159.67 Aligned_cols=172 Identities=14% Similarity=0.227 Sum_probs=141.0
Q ss_pred CCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 73 SPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
.|..+-+|.......+..+. +..+|.++.|+....+++. +++|++||+...+.++++..+.. .++.+.++|-+.
T Consensus 48 ~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~--~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 48 EDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL--NITSVDFHPYGE 125 (825)
T ss_pred CceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--CcceeeeccceE
Confidence 68899999987766676654 4569999999876655543 88999999999988888865533 456667888888
Q ss_pred EEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672 149 FLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 223 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 223 (337)
+.|.++ .|..+.+||.+..-+.+. ..|.++.|+|+|++++.|++|.+ ++|||+..|+.+.+|.. |...+.
T Consensus 126 ~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~ 200 (825)
T KOG0267|consen 126 FFASGS--TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQ 200 (825)
T ss_pred Eecccc--ccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--cccccc
Confidence 886655 699999999986554443 66999999999999999999986 79999999999999853 456799
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
++.|+|..- +|++||.|++|++||+++.
T Consensus 201 sle~hp~e~---Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 201 SLEFHPLEV---LLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ccccCchhh---hhccCCCCceeeeecccee
Confidence 999999998 9999999999999999853
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.4e-16 Score=139.92 Aligned_cols=229 Identities=10% Similarity=0.120 Sum_probs=150.2
Q ss_pred CCCEEEEEcCCc-eEEEeCCCCcEE---EEE------------------eeCCEEEEEEccCCCE-EEEEeCCCCCCCCC
Q 019672 18 DNSGFALSTKDG-FKIFDSSTGRLC---YER------------------AVGAFSIVEMLYSSSL-LAIVGAGEQPSLSP 74 (337)
Q Consensus 18 dg~~la~g~~~g-~~vw~~~~~~~~---~~~------------------~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~d 74 (337)
.|+++|+|+-+. +.|||++-...+ ..+ ++|.-.+..+++..+. -++++|+ .|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-----aD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-----AD 265 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-----CC
Confidence 467999999887 599997643111 000 0111122344444322 2345553 79
Q ss_pred ceEEEEECCCCCEEEEEEcC-CceeEEEEcCCe---EEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCcc
Q 019672 75 RRLCLFNTTTGTALRELNFL-TSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
++|++||+.++++...+.++ .+|.++.|++.. ++.++ |+++.++|.+... .-..++.... ....++.++...
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~-VEkv~w~~~se~- 343 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE-VEKVAWDPHSEN- 343 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc-eEEEEecCCCce-
Confidence 99999999999999999855 489999998754 33333 8999999998431 1122222222 233455554443
Q ss_pred EEEEcCCCCccEEEEEEccCCc-c-----cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee
Q 019672 149 FLAVPASTTKGSVLVYNVMELH-S-----HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~-~-----~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 221 (337)
.+.++. .||.|+-+|+++.. . .|..+|.+|++++. -.+++|+|.|+. +++|++..-..-....+...-..
T Consensus 344 -~f~~~t-ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 344 -SFFVST-DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred -eEEEec-CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccc
Confidence 333343 59999999999873 2 35699999999985 458999999997 69999865433211111112234
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
..|.++.|+-.+ +||.|+..+.++|||+.+....+
T Consensus 421 l~c~~~~~~~a~--~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 421 LHCFALDPDVAF--TLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eeecccCCCcce--EEEecCccceEEEeecccChhHH
Confidence 778888898774 89999999999999998765544
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=1.1e-15 Score=127.99 Aligned_cols=198 Identities=14% Similarity=0.157 Sum_probs=134.4
Q ss_pred eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC------EE----E--EEEcC----CceeEEEEcC--CeE
Q 019672 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT------AL----R--ELNFL----TSILAVRLNK--KRL 107 (337)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~------~~----~--~~~~~----~~v~~i~~~~--~~~ 107 (337)
.+++..+.+..--..+.+ +|| +|+.+.+||++.-. .+ + ...++ -.|..+.|-| .++
T Consensus 43 gGsvNsL~id~tegryml-SGg-----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYML-SGG-----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred CCccceeeeccccceEEe-ecC-----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 344544454433333334 443 79999999997543 11 1 11111 1456665543 455
Q ss_pred EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcccc-----cCceEE
Q 019672 108 VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAA 179 (337)
Q Consensus 108 ~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~ 179 (337)
++.+ |.+++|||.++.+....+..+.. ....++++-.- .+++|++. .+-+|++.|+.++...| +..|.+
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gt--r~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGT--RDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEec--CCCcEEEEeccCCcceeeeccccCceEE
Confidence 5544 99999999999988777765322 22234444333 34566554 58899999999998654 488999
Q ss_pred EEeCCCCC-EEEEEeCCCcEEEEEEcCCC-ceeEeec------------cCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672 180 IVLSSNGM-YIATASEQGTIIRVFLVSEA-TKSYSFR------------RGTYPSTIFSLSFGQSMQFQDILVATSSSGS 245 (337)
Q Consensus 180 ~~~s~dg~-~lat~s~dg~~i~vwd~~~~-~~~~~~~------------~~~~~~~i~~l~fs~dg~~~~~las~s~dg~ 245 (337)
+.|+|... .|||||.||+ ||+||++.- -++..+. ...+.+.|+.++|+.||. +|++.+.|..
T Consensus 194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---~l~~~gtd~r 269 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---YLASCGTDDR 269 (397)
T ss_pred EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---hhhhccCccc
Confidence 99999766 5889999998 699999754 2222221 223456799999999999 9999999999
Q ss_pred EEEEecCCCcc
Q 019672 246 LHVFSPGFAIN 256 (337)
Q Consensus 246 v~iw~l~~~~~ 256 (337)
+++|+...+.+
T Consensus 270 ~r~wn~~~G~n 280 (397)
T KOG4283|consen 270 IRVWNMESGRN 280 (397)
T ss_pred eEEeecccCcc
Confidence 99999987654
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.72 E-value=2.3e-16 Score=136.02 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=125.4
Q ss_pred CCeEEEEECCC----------------CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc----
Q 019672 112 REKTYIYDANT----------------LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---- 171 (337)
Q Consensus 112 d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---- 171 (337)
.|.|+|||+.. .+++.++..+......+++++...+ .|+++.. .+.|++|...++.-
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc--~~~I~lw~~~~g~W~vd~ 250 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDC--VKGIHLWEPSTGSWKVDQ 250 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-ccccCcc--ccceEeeeeccCceeecC
Confidence 68999999853 2334455444433333344442232 3555554 57799998877542
Q ss_pred ----cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672 172 ----HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL 246 (337)
Q Consensus 172 ----~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v 246 (337)
.|+..|..++|||. ...||++|.||+ |||||++.+.+...+....|.+.|+.|.|+.+-. +||+|++||++
T Consensus 251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~---lLasG~DdGt~ 326 (440)
T KOG0302|consen 251 RPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP---LLASGGDDGTL 326 (440)
T ss_pred ccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCceeeEEccCCcc---eeeecCCCceE
Confidence 25688999999995 458999999998 7999999985443333345567899999998888 99999999999
Q ss_pred EEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 247 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 247 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
+||||+..+...+ -..+...-....+-.|++.. ...+++++.|.++.+|+|..+...
T Consensus 327 ~iwDLR~~~~~~p----VA~fk~Hk~pItsieW~p~e-------------~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 327 SIWDLRQFKSGQP----VATFKYHKAPITSIEWHPHE-------------DSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred EEEEhhhccCCCc----ceeEEeccCCeeEEEecccc-------------CceEEeccCCCcEEEEEeeccCCh
Confidence 9999987543211 00011111112233566643 256889999999999999877663
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=2.5e-15 Score=137.39 Aligned_cols=275 Identities=14% Similarity=0.143 Sum_probs=170.3
Q ss_pred EEEEEcC--CC-CEEEEEcCCc-eEEEeCCCCcEE------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 11 FFVSFNQ--DN-SGFALSTKDG-FKIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 11 ~~~~fs~--dg-~~la~g~~~g-~~vw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
...+|++ .. ..||++-++| +.+||....... .....|.-.+.++.+-+.-..+++. +.|.++++|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa-----sGDsT~r~W 127 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA-----SGDSTIRPW 127 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc-----cCCceeeee
Confidence 4567764 22 3488888877 599997665332 2223344455555444433333333 138999999
Q ss_pred ECCCCCEEEE---EEcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCe--eeee----e----cC---CCC------
Q 019672 81 NTTTGTALRE---LNFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLA--ILDT----I----DT---VPN------ 134 (337)
Q Consensus 81 d~~~~~~~~~---~~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~--~~~~----~----~~---~~~------ 134 (337)
|+++++++.. +.|...|.+++|.+. -++.++ |+.|.|||++-.. .... + .+ +..
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999988865 455567888888653 333333 8999999996321 0000 0 00 000
Q ss_pred ------CceE---EEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----------c-----CceEEEEeCCCCCEE
Q 019672 135 ------LKGL---CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----------E-----APLAAIVLSSNGMYI 189 (337)
Q Consensus 135 ------~~~~---~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----------~-----~~i~~~~~s~dg~~l 189 (337)
...+ +..-...|+..||++|. .|+.|+|||+++..... . ..+.++..+..|.+|
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 0011 11223356778999986 69999999998765321 1 457889999999998
Q ss_pred EEEeCCCcEEEEEEcCCCce--eEeeccCCcce--eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccc
Q 019672 190 ATASEQGTIIRVFLVSEATK--SYSFRRGTYPS--TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS 265 (337)
Q Consensus 190 at~s~dg~~i~vwd~~~~~~--~~~~~~~~~~~--~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~ 265 (337)
.+.+.|++ |..||+.+-.. +..+. +.... .|.+ ..|||+. +|++|+.|..+.||.+.+...+.. .
T Consensus 287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~s-g~~~~sf~vks-~lSpd~~---~l~SgSsd~~ayiw~vs~~e~~~~-----~ 355 (720)
T KOG0321|consen 287 FASCTDNS-IYFYNMRSLSISPVAEFS-GKLNSSFYVKS-ELSPDDC---SLLSGSSDEQAYIWVVSSPEAPPA-----L 355 (720)
T ss_pred EEEecCCc-EEEEeccccCcCchhhcc-Ccccceeeeee-ecCCCCc---eEeccCCCcceeeeeecCccCChh-----h
Confidence 88888998 67999976432 22221 11111 1333 5689999 999999999999999988765431 1
Q ss_pred cccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 266 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 266 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
+.+..-+.+.-.|.+.. -.-+++.+.|-.+++|++..
T Consensus 356 -l~Ght~eVt~V~w~pS~-------------~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 356 -LLGHTREVTTVRWLPSA-------------TTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -hhCcceEEEEEeecccc-------------CCCceeeccCcceEEEeccC
Confidence 11111112222344422 13477779999999999943
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=9.7e-16 Score=135.10 Aligned_cols=237 Identities=12% Similarity=0.151 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEcCCCC--EEEEEcCCc-eEEEeCCCCc------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672 5 SSSYPVFFVSFNQDNS--GFALSTKDG-FKIFDSSTGR------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~--~la~g~~~g-~~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
....+|++++|+|... ++|+|...| +-+||+.+.+ .++..+..++..+.+.+...-.++.+. .||
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS------yDG 257 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS------YDG 257 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec------cCc
Confidence 3567899999999876 567777766 6999995332 233344445666666554443444443 599
Q ss_pred eEEEEECCCCCEEEEEEc--CC-ceeEEEEcC-CeEEEEEC--CeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCcc
Q 019672 76 RLCLFNTTTGTALRELNF--LT-SILAVRLNK-KRLVIVLR--EKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~--~~-~v~~i~~~~-~~~~v~~d--~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
+|++=|++++....-+.. .. -...+.++. +..++..+ |...+||+++++. ...+..+.. .++.++.+|...
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p 335 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNPVCP 335 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCCCCc
Confidence 999999987642222221 11 233444533 33333332 4789999987754 444454443 677777777655
Q ss_pred -EEEEcCCCCccEEEEEEccCCcc---------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc----CCCceeEeec
Q 019672 149 -FLAVPASTTKGSVLVYNVMELHS---------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLV----SEATKSYSFR 214 (337)
Q Consensus 149 -~la~~~~~~dg~v~i~d~~~~~~---------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~----~~~~~~~~~~ 214 (337)
++|+++ .|++++|||++.... .|+.+|++..|||+|-.|+|.+.|.. |||||. ..-+.+.++.
T Consensus 336 ~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 336 WFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred hheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceee
Confidence 466666 699999999986532 14488999999999888999999987 799998 3333334443
Q ss_pred cCCcce---eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 215 RGTYPS---TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 215 ~~~~~~---~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
...... ...-.+|.||.. ++++|-.-..|-|||-..+.
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~---li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYN---LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ccCcccccccchhheeCCCcc---EEEEeccCcceeEEcCCCCE
Confidence 221111 234468999988 99999999999999966544
No 143
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=129.23 Aligned_cols=237 Identities=10% Similarity=0.108 Sum_probs=156.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEe------CCC--------Cc-EE--EEEe-----------eCCE--EEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFD------SST--------GR-LC--YERA-----------VGAF--SIV 52 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~------~~~--------~~-~~--~~~~-----------~~~~--~~~ 52 (337)
++|.+.|+|++|++.+.++++++.|+- .||. +.. ++ .. ...+ .+.+ ..+
T Consensus 187 ~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~ 266 (481)
T KOG0300|consen 187 TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM 266 (481)
T ss_pred cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence 478899999999999999999988875 7885 111 01 00 0000 0011 111
Q ss_pred ------------EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEE
Q 019672 53 ------------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTY 116 (337)
Q Consensus 53 ------------~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~ 116 (337)
+++-.+.. ++. .+.|++..+||+++|+.+..+..+. +.+-+.-+|...++.+ |.+.+
T Consensus 267 ~ltgH~~vV~a~dWL~gg~Q--~vT-----aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLAGGQQ--MVT-----ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeccccceEehhhhcCcce--eee-----eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 11111112 222 2589999999999999998876554 5555566665544443 78999
Q ss_pred EEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEE
Q 019672 117 IYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIA 190 (337)
Q Consensus 117 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~la 190 (337)
+||++.. ..+..|+.+.+ .+.+..++-+. .+++++ .|.+|+|||+++++... .++++.++++..+..||
T Consensus 340 LWDFReaI~sV~VFQGHtd--tVTS~vF~~dd-~vVSgS--DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTD--TVTSVVFNTDD-RVVSGS--DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA 414 (481)
T ss_pred eccchhhcceeeeeccccc--ceeEEEEecCC-ceeecC--CCceEEEeeeccccCcceeeecCCccceeEeecCCceEE
Confidence 9999843 33455665544 45555554433 344444 59999999999887532 28999999998888887
Q ss_pred EEeCCCcEEEEEEcCCCceeEeecc---CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 191 TASEQGTIIRVFLVSEATKSYSFRR---GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 191 t~s~dg~~i~vwd~~~~~~~~~~~~---~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
.--+.. .||+||+. |..+.++.+ ..|...|.|++|..+-.. .-|++++.|..+.=|++..+.
T Consensus 415 iPhDNR-qvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 415 IPHDNR-QVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eccCCc-eEEEEecC-CCccccCCcccccccceeeeeeeccccCcc-cccccccccceeeeeEecccC
Confidence 766555 58999995 555555542 224557999999854321 248899999999999987653
No 144
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=5.1e-14 Score=127.51 Aligned_cols=264 Identities=11% Similarity=0.069 Sum_probs=161.4
Q ss_pred EcCCceEEEeCCC-CcE--EEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC-CCCE--EEEEEcCCce
Q 019672 25 STKDGFKIFDSST-GRL--CYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTA--LRELNFLTSI 97 (337)
Q Consensus 25 g~~~g~~vw~~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-~~~~--~~~~~~~~~v 97 (337)
+.++++.+|++.+ +++ +.... .+....+.+.++.+.+..++. .++.|.+|++. +++. +.........
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 4456689999864 442 22222 233445566777776655443 47899999986 3433 2333444456
Q ss_pred eEEEEcCCe--EEEEE--CCeEEEEECCC-Ce---eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC
Q 019672 98 LAVRLNKKR--LVIVL--REKTYIYDANT-LA---ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL 169 (337)
Q Consensus 98 ~~i~~~~~~--~~v~~--d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~ 169 (337)
..+.+++++ ++++. ++.|.+|++.+ +. .+..+....+ ...+..+|++.++++++. .++.|.+||+.+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---~~~~~~~p~g~~l~v~~~-~~~~v~v~d~~~~ 158 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG---CHSANIDPDNRTLWVPCL-KEDRIRLFTLSDD 158 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc---ccEeEeCCCCCEEEEeeC-CCCEEEEEEECCC
Confidence 778888654 55555 78999999963 22 2222222222 233455677778776665 5899999999763
Q ss_pred cccc-----------cCceEEEEeCCCCCEEEEEeC-CCcEEEEEEcCC--Cc--eeEeeccCC----cceeEEEEEeec
Q 019672 170 HSHC-----------EAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSE--AT--KSYSFRRGT----YPSTIFSLSFGQ 229 (337)
Q Consensus 170 ~~~~-----------~~~i~~~~~s~dg~~lat~s~-dg~~i~vwd~~~--~~--~~~~~~~~~----~~~~i~~l~fs~ 229 (337)
..+. ......++|+|||++++++++ +++ |.+|++.. ++ .+.++.... .......+.|+|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 2211 134578999999999988887 555 78999973 32 233332110 111133588999
Q ss_pred CCCcccEEEEEe-CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe-CC
Q 019672 230 SMQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NG 307 (337)
Q Consensus 230 dg~~~~~las~s-~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~-dg 307 (337)
||+ +|.++. .+++|.+|+++...... .+.+ ..+. -+.+. .+.+.+++++|++++. +|
T Consensus 238 dg~---~lyv~~~~~~~I~v~~i~~~~~~~------~~~~-~~~~----~~~p~-------~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 238 DGR---HLYACDRTASLISVFSVSEDGSVL------SFEG-HQPT----ETQPR-------GFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred CCC---EEEEecCCCCeEEEEEEeCCCCeE------EEeE-EEec----cccCC-------ceEECCCCCEEEEEEccCC
Confidence 999 888874 47899999996543211 1111 1110 00110 1233567789998876 99
Q ss_pred cEEEEEEecCCCC
Q 019672 308 YFVEYIFSINNCC 320 (337)
Q Consensus 308 ~~~~~~~~~~~~~ 320 (337)
++.+|.++.+.+.
T Consensus 297 ~v~v~~~~~~~g~ 309 (330)
T PRK11028 297 HISVYEIDGETGL 309 (330)
T ss_pred cEEEEEEcCCCCc
Confidence 9999999877664
No 145
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.71 E-value=1.8e-15 Score=139.40 Aligned_cols=218 Identities=12% Similarity=0.130 Sum_probs=154.7
Q ss_pred EEEc-CCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672 13 VSFN-QDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (337)
Q Consensus 13 ~~fs-~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~ 90 (337)
+.+- .|+-.+.+|+.|+. .+|.+.+...++...+|...++++.-..... +++| +.|.++++|-. +++...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg-----SWD~TakvW~~--~~l~~~ 135 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG-----SWDSTAKVWRI--GELVYS 135 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec-----ccccceEEecc--hhhhcc
Confidence 4554 34455788888875 8999999988887766655555544223333 5565 48999999964 344444
Q ss_pred EE-cCCceeEEEEcCCeEEE-EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc
Q 019672 91 LN-FLTSILAVRLNKKRLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM 167 (337)
Q Consensus 91 ~~-~~~~v~~i~~~~~~~~v-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~ 167 (337)
+. |...|.++..-+...++ ++ |.+|++|.- ++.++++..|.+... +++.-+++ .+++++ .||.|+.|++.
T Consensus 136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR--gL~vl~~~-~flScs--NDg~Ir~w~~~ 208 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR--GLAVLDDS-HFLSCS--NDGSIRLWDLD 208 (745)
T ss_pred cCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhhee--eeEEecCC-CeEeec--CCceEEEEecc
Confidence 44 44589888765544444 33 899999974 677888887655433 33333333 456666 59999999994
Q ss_pred CCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672 168 ELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 168 ~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d 243 (337)
.... .|++-|.+++..+++..++++++|++ +|||+.. ++.+.+... ...|+++.+-++|. +++|+.|
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD----Ivvg~SD 279 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD----IVVGGSD 279 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEecC--ccceEEEEEeeCCC----EEEeccC
Confidence 3322 25588999998888889999999998 6999976 666666432 22589999999997 9999999
Q ss_pred CcEEEEecCCC
Q 019672 244 GSLHVFSPGFA 254 (337)
Q Consensus 244 g~v~iw~l~~~ 254 (337)
|.|+||..++.
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999987654
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.2e-15 Score=125.84 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=154.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCc--eEEEeCCCC---cEEEE--------E-eeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672 9 PVFFVSFNQDNSGFALSTKDG--FKIFDSSTG---RLCYE--------R-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~~g--~~vw~~~~~---~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (337)
.-+.+.|.||-+-+++....| +++|-+... ..-+. . ..+.+.++.+--..+...+.+. +.|
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa-----s~d 208 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA-----SLD 208 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe-----cCC
Confidence 457889999999877666544 688865432 21111 0 1133344433222332223333 258
Q ss_pred ceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEEC---CCC---eeeeeecCCCCCceEEEEeeC
Q 019672 75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDA---NTL---AILDTIDTVPNLKGLCAFSPS 144 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~---~~~---~~~~~~~~~~~~~~~~~~~~~ 144 (337)
.+|.||+++ |+.+..+..+. .-...+++|++.+++. --.+++|.+ ++| +..+.++...+..++.+++++
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence 999999999 88888887654 4455667887766655 347999987 233 122333444556678888999
Q ss_pred CCccEEEEcCCCCccEEEEEEccCC-------ccc-------cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672 145 LNACFLAVPASTTKGSVLVYNVMEL-------HSH-------CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 145 ~~~~~la~~~~~~dg~v~i~d~~~~-------~~~-------~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~ 208 (337)
++...+++.+ .||.++|||+.-. +.+ +. +.-..++++|+|+.||.+... .++++..++|+
T Consensus 288 n~S~r~vtvS--kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs--~l~~~~se~g~ 363 (420)
T KOG2096|consen 288 NSSTRAVTVS--KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS--DLKVFASEDGK 363 (420)
T ss_pred CCcceeEEEe--cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC--ceEEEEcccCc
Confidence 9999999998 4999999997521 111 11 333489999999999887644 37999999999
Q ss_pred eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
...++.+. |...|.+++|+++|+ ++|++++ ..++++.
T Consensus 364 ~~~~~e~~-h~~~Is~is~~~~g~---~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 364 DYPELEDI-HSTTISSISYSSDGK---YIATCGD-RYVRVIR 400 (420)
T ss_pred cchhHHHh-hcCceeeEEecCCCc---EEeeecc-eeeeeec
Confidence 98888654 466799999999999 8888875 5788875
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=8.2e-16 Score=136.81 Aligned_cols=234 Identities=16% Similarity=0.211 Sum_probs=158.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcC--Cc-eEEEeCCCC--cE-EEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 7 SYPVFFVSFNQDNSGFALSTK--DG-FKIFDSSTG--RL-CYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~--~g-~~vw~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
...+.++.|+...- |++++. +. +++|.-... +. +..+..+ ...++.+..- . +.++++| ..+.|+|
T Consensus 34 ~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S-~y~~sgG-----~~~~Vki 105 (673)
T KOG4378|consen 34 EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-S-LYEISGG-----QSGCVKI 105 (673)
T ss_pred CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-c-eeeeccC-----cCceeee
Confidence 34489999988765 444433 33 478864332 12 2222211 1222322211 2 3344554 5789999
Q ss_pred EECCCCCEEEEEE-cCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCC-CceEEEEeeCCCccEEEEcC
Q 019672 80 FNTTTGTALRELN-FLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPN-LKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~ 154 (337)
||++...+.+.+. |.+.|+++.++.+.-.++ . .|.|.|..+.++....++..+.+ ...++-++++. ..+|.+++
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~as 184 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIAS 184 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc-ceeeEeec
Confidence 9999666555554 445899999875443333 3 67999999998877666654322 22344555543 34555555
Q ss_pred CCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 155 STTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
.+|.|.+||++..... |.+|...|+|+|. ..+||+.+.|.. |.+||+...+...++. ..++..+|+|
T Consensus 185 --d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf 258 (673)
T KOG4378|consen 185 --DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAF 258 (673)
T ss_pred --cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeee
Confidence 5999999999877654 4599999999995 458899999987 5799998777666653 2456889999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 228 GQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
+++|. +|++|+..|.|..||++..+.|.
T Consensus 259 ~~~G~---~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 259 SECGT---YLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred cCCce---EEEeecCCceEEEEecccCCCCc
Confidence 99999 99999999999999998765543
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.3e-15 Score=135.47 Aligned_cols=264 Identities=11% Similarity=0.092 Sum_probs=173.2
Q ss_pred EEEEEcCCceEEEeCCCCcE--EEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEEEEECCC--CCE-EEEEEcC
Q 019672 21 GFALSTKDGFKIFDSSTGRL--CYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLFNTTT--GTA-LRELNFL 94 (337)
Q Consensus 21 ~la~g~~~g~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~iwd~~~--~~~-~~~~~~~ 94 (337)
+.++++.|.+++||....+. .+..+....++..+.+.. +.+.+.+.+ .|..+++|.-.. ++. +......
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~-----gdk~~~~~~K~g~~~~Vp~~~k~~g 79 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMA-----GDKVMRIKEKDGKTPEVPRVRKLTG 79 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecC-----CceeEEEecccCCCCccceeecccc
Confidence 56667778899999765433 233222222334444444 334444442 489999996322 211 1111112
Q ss_pred CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672 95 TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS 171 (337)
Q Consensus 95 ~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~ 171 (337)
..-.|+.....-+..+. .+.|+|||++.....+.+..|. ..+.++..+-...+||+.+ ..|.|.|..+.+...
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs--~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVS--DGGDIIIHGTKTKQK 155 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEec--cCCcEEEEecccCcc
Confidence 23333433333233332 7799999998544444455443 4677777777778999887 479999999887765
Q ss_pred ccc------CceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 172 HCE------APLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 172 ~~~------~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
..+ ..|.-+.|+|..+ +|.+++.+|. +.+||++...++..+.. .|.++...|+|||... .+|++-+.|.
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne--~l~vsVG~Dk 231 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNE--ALLVSVGYDK 231 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCcc--ceEEEecccc
Confidence 432 4467899999766 5678888997 68999998887776654 4577888999999887 4889999999
Q ss_pred cEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672 245 SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 319 (337)
Q Consensus 245 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~ 319 (337)
.|.+||+....... .+..--| ..++++++.+.+|++|+..|.++.|++...+.
T Consensus 232 ki~~yD~~s~~s~~-------~l~y~~P---------------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 232 KINIYDIRSQASTD-------RLTYSHP---------------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eEEEeecccccccc-------eeeecCC---------------cceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 99999987443211 1110001 12456678889999999999999999976654
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.3e-16 Score=154.31 Aligned_cols=219 Identities=12% Similarity=0.163 Sum_probs=147.7
Q ss_pred CCceEEEEECCC---CCE---EEE-EEcCCceeEEEEcCCeE-EEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672 73 SPRRLCLFNTTT---GTA---LRE-LNFLTSILAVRLNKKRL-VIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF 141 (337)
Q Consensus 73 ~d~~v~iwd~~~---~~~---~~~-~~~~~~v~~i~~~~~~~-~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 141 (337)
.||.|.+||... +.. +.+ -.|+++|+.+.|++..- +++. ++.|.|||+.+.+.-........+..+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 799999999764 221 122 24678999999987543 4443 789999999876554444333345567888
Q ss_pred eeCCCccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCCC-EEEEEeCCCc--EEEEEEcCCCc-ee
Q 019672 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGM-YIATASEQGT--IIRVFLVSEAT-KS 210 (337)
Q Consensus 142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~-~lat~s~dg~--~i~vwd~~~~~-~~ 210 (337)
+++....++..+++ .+|.+.|||++..+.+-. ..+..++|+|++. .|+++++|.. +|.+||++.-. .+
T Consensus 168 sWNrkvqhILAS~s-~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 168 SWNRKVSHILASGS-PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred ccchhhhHHhhccC-CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 98866555444443 589999999998765432 3488999999764 6777777643 57899987543 34
Q ss_pred EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeec
Q 019672 211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA 290 (337)
Q Consensus 211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 290 (337)
+++ ++ |..-|.+|.|++.+. .+|++++.|+.|-+|+.++++-. ..+|.. .-|-+... +
T Consensus 247 k~~-~~-H~~GilslsWc~~D~--~lllSsgkD~~ii~wN~~tgEvl-----------~~~p~~--~nW~fdv~-----w 304 (1049)
T KOG0307|consen 247 KIL-EG-HQRGILSLSWCPQDP--RLLLSSGKDNRIICWNPNTGEVL-----------GELPAQ--GNWCFDVQ-----W 304 (1049)
T ss_pred hhh-cc-cccceeeeccCCCCc--hhhhcccCCCCeeEecCCCceEe-----------eecCCC--Ccceeeee-----e
Confidence 444 33 344589999998874 29999999999999998875431 122221 12222211 1
Q ss_pred cCCCccc-CEEEEEEeCCcEEEEEEecC
Q 019672 291 FPAGVKR-ASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 291 ~~~~~~~-~~l~~~~~dg~~~~~~~~~~ 317 (337)
-+++ ..+.+.+.||.|.||++...
T Consensus 305 ---~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 ---CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ---cCCCcchhhhheeccceeeeeeecC
Confidence 1222 35778889999999999544
No 150
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.6e-16 Score=131.33 Aligned_cols=197 Identities=15% Similarity=0.190 Sum_probs=138.7
Q ss_pred CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc--------CceEEEEeC
Q 019672 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--------APLAAIVLS 183 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~s 183 (337)
.+.|++||..+++.+..+..++.....+.+........+.+++ .||+|++||+++...... .+..|++.+
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s--sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS--SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec--cCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 7899999999999999998776655556665532223455555 599999999998764321 578889988
Q ss_pred CCCCEEEEEeC----CCcEEEEEEcCCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 184 SNGMYIATASE----QGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 184 ~dg~~lat~s~----dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
..++.+++|.+ +. .+.+||++..+. +..+. ..|...|++|.|+|... ++|++||.||.|.|||++.+.+.-
T Consensus 127 ck~~ii~~GtE~~~s~A-~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeD 202 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDA-SVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEED 202 (376)
T ss_pred CcCCeEEeccccccCce-EEEEEEeccccchhhhhh-hhccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchh
Confidence 88899999875 33 357999998877 55554 34566799999999987 899999999999999998774422
Q ss_pred CCCccccccccccc--ccc-eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeeeccc
Q 019672 259 RGGRTSSILGSILP--ESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTK 335 (337)
Q Consensus 259 ~~~~~~~~~~~~~~--~~~-~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
. +-.+.. ..+ ..-|.. ++=++|++.+..+.+.+|+++...+ .+|--...+...|.
T Consensus 203 a-------L~~viN~~sSI~~igw~~-------------~~ykrI~clTH~Etf~~~ele~~~~--~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 203 A-------LLHVINHGSSIHLIGWLS-------------KKYKRIMCLTHMETFAIYELEDGSE--ETWLENPDVSADDL 260 (376)
T ss_pred h-------HHHhhcccceeeeeeeec-------------CCcceEEEEEccCceeEEEccCCCh--hhcccCccchhhhH
Confidence 1 111111 001 112222 1225799999999999999965553 35555555666666
Q ss_pred C
Q 019672 336 R 336 (337)
Q Consensus 336 ~ 336 (337)
|
T Consensus 261 r 261 (376)
T KOG1188|consen 261 R 261 (376)
T ss_pred H
Confidence 5
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.70 E-value=4.5e-15 Score=130.97 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=132.9
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCCCCCCCceEEEEECCCCCEE----EE-EEcCCceeEEEEcCC---eEEEEE-CCeEE
Q 019672 47 GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL----RE-LNFLTSILAVRLNKK---RLVIVL-REKTY 116 (337)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iwd~~~~~~~----~~-~~~~~~v~~i~~~~~---~~~v~~-d~~i~ 116 (337)
+.+..+++.+..+ .++.+|. .-|+|-+||+.+.++. .. ..+..+|.++.|+|. +++.++ ||+|+
T Consensus 187 ~Rit~l~fHPt~~~~lva~Gd------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGD------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred cceEEEEecccCcceEEEEcc------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 4455566655556 4444444 4789999999643321 12 234568999999763 444444 99999
Q ss_pred EEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCC-CCEE
Q 019672 117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSN-GMYI 189 (337)
Q Consensus 117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~d-g~~l 189 (337)
+-|++....-..+.........+.+.++.+...+.+++ .=|...+||+++... .|+..|++|+++|. -.+|
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD--NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEee--cccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99998763322222212233445555555555566655 356899999987654 35579999999995 4589
Q ss_pred EEEeCCCcEEEEEEcCCCceeEe--eccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 190 ATASEQGTIIRVFLVSEATKSYS--FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 190 at~s~dg~~i~vwd~~~~~~~~~--~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
||+|.|++ .+|||++.-..... +..-.|...|.+..|||++. .|++.+.|++|+|||..
T Consensus 339 aT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 339 ATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---ceEeeccCCceEEeecc
Confidence 99999998 59999986443221 22223456799999999998 79999999999999974
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=5.1e-16 Score=128.15 Aligned_cols=232 Identities=13% Similarity=0.154 Sum_probs=145.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
++.+.|+|+-|..+++ |.+|...|+ ++|++.+.+-+..++ .+...+..+..-++ -.+.+-| .|.++.+|++
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqg-----Rd~~L~lw~i 84 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQG-----RDPLLILWTI 84 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcC-----CCceEEEEEc
Confidence 5677899999988877 777888885 999999876544333 22223333322222 1222322 4677777776
Q ss_pred CCCCEEEE--E-----------------------Ec-----------------------------CCceeEEEE----cC
Q 019672 83 TTGTALRE--L-----------------------NF-----------------------------LTSILAVRL----NK 104 (337)
Q Consensus 83 ~~~~~~~~--~-----------------------~~-----------------------------~~~v~~i~~----~~ 104 (337)
.-+..+.. + .. .+.+.+..+ ..
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 54221100 0 00 012333322 11
Q ss_pred CeEEEEE--CCeEEEEECCCCeeeeeecC--------CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC--ccc
Q 019672 105 KRLVIVL--REKTYIYDANTLAILDTIDT--------VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--HSH 172 (337)
Q Consensus 105 ~~~~v~~--d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--~~~ 172 (337)
..+++++ ++.+.+||+.++..+-.+.. ..+...++.+..++....=+.++ .+..+..|.+... ...
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg--a~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG--ADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC--ccccceeeeeccccCccc
Confidence 2344455 88999999988743333211 01122344444433222223333 2556777876543 222
Q ss_pred c-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672 173 C-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 245 (337)
Q Consensus 173 ~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~ 245 (337)
+ .-.|..+.+-||++.+||++-||+ ||||+.++++.+..++. |.+.|++++|+||.. .+|++|.|++
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~---lmAaaskD~r 316 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCE---LMAAASKDAR 316 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCc---hhhhccCCce
Confidence 1 155889999999999999999998 79999999999988864 457899999999987 9999999999
Q ss_pred EEEEec
Q 019672 246 LHVFSP 251 (337)
Q Consensus 246 v~iw~l 251 (337)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=1.9e-15 Score=138.16 Aligned_cols=243 Identities=12% Similarity=0.144 Sum_probs=157.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEE----EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYE----RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
..|.+.|..+.|-|...+|++++.| .+++||+.+.++.-. .+.+.+..+++... +-..+++|| .|+.|.
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGg-----RDg~il 170 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGG-----RDGEIL 170 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-CCcceeecc-----CCCcEE
Confidence 3688899999999955667766555 479999998876533 22233443443322 334455554 799999
Q ss_pred EEECCCCCEE---------------------------EEE-----EcCCceeEEEE-cCCeEEEEE--CCeEEEEECCCC
Q 019672 79 LFNTTTGTAL---------------------------REL-----NFLTSILAVRL-NKKRLVIVL--REKTYIYDANTL 123 (337)
Q Consensus 79 iwd~~~~~~~---------------------------~~~-----~~~~~v~~i~~-~~~~~~v~~--d~~i~i~d~~~~ 123 (337)
|||++....- ... .+.+.|+.+.| +.+.++.++ |+.|+||||+..
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 9998743200 000 01123555555 344455554 889999999865
Q ss_pred eeeeee------cCCCC---CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCC
Q 019672 124 AILDTI------DTVPN---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSN 185 (337)
Q Consensus 124 ~~~~~~------~~~~~---~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~d 185 (337)
...... ..+.+ ..+...+..+.-|.+|...- .|+.|..|++.+...... .--..-..+||
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe--cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 332221 11112 34567777776666665443 499999999987543211 11223356999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 186 GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 186 g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
+.+|++|+.|+.. .+|.+.+.+.-..+..|+ .-+|++++|.|..- .-++++++|.+++||++..+.+.+
T Consensus 329 ~~~l~SgSsd~~a-yiw~vs~~e~~~~~l~Gh-t~eVt~V~w~pS~~--t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 329 DCSLLSGSSDEQA-YIWVVSSPEAPPALLLGH-TREVTTVRWLPSAT--TPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CceEeccCCCcce-eeeeecCccCChhhhhCc-ceEEEEEeeccccC--CCceeeccCcceEEEeccCchhhc
Confidence 9999999999985 799999887655554553 56799999986543 248888999999999997655443
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=5.2e-15 Score=125.70 Aligned_cols=280 Identities=14% Similarity=0.150 Sum_probs=181.1
Q ss_pred CCCCCCeEEEEEcC-----CCCEEEEEcCCceEEEeCCCC---cEEEEEe----eCCEEEEEEccCC---CEEEEEeCCC
Q 019672 4 QSSSYPVFFVSFNQ-----DNSGFALSTKDGFKIFDSSTG---RLCYERA----VGAFSIVEMLYSS---SLLAIVGAGE 68 (337)
Q Consensus 4 ~~~~~~v~~~~fs~-----dg~~la~g~~~g~~vw~~~~~---~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~g~ 68 (337)
..+..+|..++||+ +-+.+|+.+.+.+.+|+...- +++.... .....-+.+.++. +-+..++|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G-- 112 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG-- 112 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--
Confidence 46778999999994 334578888888889975432 2222221 1223444555554 33333343
Q ss_pred CCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCe--EEE-EE-CCeEEEEECCCCeeeeeecCC-CCCceEEEEe
Q 019672 69 QPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTV-PNLKGLCAFS 142 (337)
Q Consensus 69 ~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v-~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~ 142 (337)
.-|.|+|.|+.++++...+-.+ ..|..|++.|.. +++ ++ |.+|++|+++++..+..+-.. .+...++++.
T Consensus 113 ----~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 113 ----YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ----ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 4789999999999998887554 589999998765 444 34 889999999999988887433 2344578888
Q ss_pred eCCCccEEEEcCCCCccEEEEEEccCCccc---------------------------------ccCceEEEEeCCCCCEE
Q 019672 143 PSLNACFLAVPASTTKGSVLVYNVMELHSH---------------------------------CEAPLAAIVLSSNGMYI 189 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------------------------------~~~~i~~~~~s~dg~~l 189 (337)
+++++.+++++| .|.++++|++...+.. |..+|-|+.|= |.++
T Consensus 189 ~~~~gd~i~ScG--mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 189 FSLDGDRIASCG--MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EcCCCCeeeccC--CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 899999999999 5999999999732211 11344445442 5788
Q ss_pred EEEeCCCcEEEEEEc-CCCceeEeeccC-----------CcceeEEEEEe--ecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 190 ATASEQGTIIRVFLV-SEATKSYSFRRG-----------TYPSTIFSLSF--GQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 190 at~s~dg~~i~vwd~-~~~~~~~~~~~~-----------~~~~~i~~l~f--s~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
++=|-++. |..|-- +-++.+....+. ...+.|+-|.| .|-++ +||.|...|.|.+|||+...
T Consensus 265 lSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~---~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 265 LSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK---MLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred eecccCce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH---HHhhccCCCcEEEEECCCCC
Confidence 88888886 668976 222222222111 11234555555 46677 99999999999999998765
Q ss_pred ccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672 256 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~ 314 (337)
++... ...-...... . .-.++..++..|+..|.||.|..|+.
T Consensus 341 p~~~t----tl~~s~~~~t-----------V--RQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCT----TLTHSKSGST-----------V--RQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CccCc----eEEeccccce-----------e--eeeeecccCcEEEEEeCCCcEEEEEe
Confidence 53210 0000000000 0 01122445678999999999988875
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.4e-15 Score=126.15 Aligned_cols=180 Identities=11% Similarity=0.152 Sum_probs=131.9
Q ss_pred CCceEEEEECCCCCEEEEEEcCC-ceeEEEE----cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCC-ceEEEEeeCC
Q 019672 73 SPRRLCLFNTTTGTALRELNFLT-SILAVRL----NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSL 145 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~----~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 145 (337)
+.+.|++||..+++.+.+++.+. .+..+.| ++..+..++ ||+|++||++.......+....++ ....++..+-
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 46899999999999888887655 4556666 345566665 999999999987666555443333 3445666655
Q ss_pred CccEEEEcCC--CCccEEEEEEccCCcc-c------ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCce----eE
Q 019672 146 NACFLAVPAS--TTKGSVLVYNVMELHS-H------CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK----SY 211 (337)
Q Consensus 146 ~~~~la~~~~--~~dg~v~i~d~~~~~~-~------~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~----~~ 211 (337)
....++++.- ..+-.|.+||++..+. + |...|+++.|+| +.++|+|||.||- +.|||++.... +.
T Consensus 128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALLH 206 (376)
T ss_pred cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHHH
Confidence 5667766531 1367899999998765 2 458899999999 5679999999995 79999975432 22
Q ss_pred eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
.+. +.+.|.++.|..++. +.+.+-+..++..+|+++.+.+..
T Consensus 207 viN---~~sSI~~igw~~~~y--krI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 207 VIN---HGSSIHLIGWLSKKY--KRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhc---ccceeeeeeeecCCc--ceEEEEEccCceeEEEccCCChhh
Confidence 332 234599999998884 368888999999999998876543
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.69 E-value=3.6e-15 Score=128.71 Aligned_cols=237 Identities=13% Similarity=0.163 Sum_probs=151.5
Q ss_pred CCCCCCCeEEEEEcCCCCE-EE-EEcCCc-eEEEeCCCC----------------cEEEEEeeCCEEEEEEccCCC-EEE
Q 019672 3 NQSSSYPVFFVSFNQDNSG-FA-LSTKDG-FKIFDSSTG----------------RLCYERAVGAFSIVEMLYSSS-LLA 62 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~-la-~g~~~g-~~vw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~ 62 (337)
.-++.+.++.+.-++-|+- ++ +=++.| ++||++... +.+++...+...-..+.+++- .-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 4456667777777776532 33 334555 799987532 123444333333333444441 112
Q ss_pred EEeCCCCCCCCCceEEEEECCCCCEEEE----EEcCCceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672 63 IVGAGEQPSLSPRRLCLFNTTTGTALRE----LNFLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPN 134 (337)
Q Consensus 63 ~~~~g~~~~~~d~~v~iwd~~~~~~~~~----~~~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~~~ 134 (337)
+.+|. +-+.|++|...+|..... ..|...|-++.|+|.. ++.++ |++|+|||++.+.....+.+..+
T Consensus 227 LlsGD-----c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 227 LLSGD-----CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH 301 (440)
T ss_pred cccCc-----cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence 33331 467899999988865432 2345588999997642 33344 99999999998844333333344
Q ss_pred CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcC
Q 019672 135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~ 205 (337)
...+..++++.+..+||+++ .||+++|||++..+.. |+.||++|.|+|. ...|+++++|.. |.|||+.
T Consensus 302 ~sDVNVISWnr~~~lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWDls 378 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWDLS 378 (440)
T ss_pred CCceeeEEccCCcceeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEEee
Confidence 55788888888888888887 6999999999876532 5599999999994 457777888877 6899985
Q ss_pred CCce-----------eEee-----ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 206 EATK-----------SYSF-----RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 206 ~~~~-----------~~~~-----~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
-... +..+ --+.....|..|.|++.-. .+|++.+.|| +.||.
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP--G~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP--GLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC--CeEEEecccc-eeEEE
Confidence 3221 0000 0011123477889997765 4899999998 44553
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.7e-14 Score=126.96 Aligned_cols=278 Identities=12% Similarity=0.130 Sum_probs=171.9
Q ss_pred EEEEcCCCCEEEEEcC-Cc-----eEEEeCCCCcEEEEEee---CCE-EEEEEcc-------CCCEEEEEeCCCCCCCCC
Q 019672 12 FVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYERAV---GAF-SIVEMLY-------SSSLLAIVGAGEQPSLSP 74 (337)
Q Consensus 12 ~~~fs~dg~~la~g~~-~g-----~~vw~~~~~~~~~~~~~---~~~-~~~~~~~-------~~~~~~~~~~g~~~~~~d 74 (337)
.+..-|...+++++-. +. +.|||-+. .-+|.++. ... .++++.- .+|++|+.+ .|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGt-------md 201 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGT-------MD 201 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEec-------cC
Confidence 4456677777776643 33 35666432 33444321 111 1223221 235666544 47
Q ss_pred ceEEEEECCCCCE---EEEEE-------------------cCCceeEEEEcCCe-EEEEE---CCeEEEEECCCCeeeee
Q 019672 75 RRLCLFNTTTGTA---LRELN-------------------FLTSILAVRLNKKR-LVIVL---REKTYIYDANTLAILDT 128 (337)
Q Consensus 75 ~~v~iwd~~~~~~---~~~~~-------------------~~~~v~~i~~~~~~-~~v~~---d~~i~i~d~~~~~~~~~ 128 (337)
..|.|||+.--.. ...+. |...|.+++++.+. -++++ |.+|.+||+.++++..+
T Consensus 202 p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s 281 (463)
T KOG0270|consen 202 PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS 281 (463)
T ss_pred ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee
Confidence 8999999753211 11111 22245667776542 22222 88999999999999888
Q ss_pred ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCC-EEEEEeCCCcEEEEE
Q 019672 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGM-YIATASEQGTIIRVF 202 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~-~lat~s~dg~~i~vw 202 (337)
+..+. ..+.++.+++....+...|+ .|++|.+.|.+...... .+.|..++|+|... .++++..||+ +|=+
T Consensus 282 ~~~~~--k~Vq~l~wh~~~p~~LLsGs-~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~~~ 357 (463)
T KOG0270|consen 282 ITHHG--KKVQTLEWHPYEPSVLLSGS-YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VYYF 357 (463)
T ss_pred hhhcC--CceeEEEecCCCceEEEecc-ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EEee
Confidence 86444 35666776665544444444 59999999999543332 28899999999654 6677788997 5899
Q ss_pred EcCCC-ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccc
Q 019672 203 LVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP 281 (337)
Q Consensus 203 d~~~~-~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 281 (337)
|++.. +++.++. .|..+|.+|++++.-+ ++|+++|.|++|++|++..........+.-. ++. ..+ .
T Consensus 358 D~R~~~~~vwt~~--AHd~~ISgl~~n~~~p--~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-~~r-----l~c-~-- 424 (463)
T KOG0270|consen 358 DIRNPGKPVWTLK--AHDDEISGLSVNIQTP--GLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-LGR-----LHC-F-- 424 (463)
T ss_pred ecCCCCCceeEEE--eccCCcceEEecCCCC--cceeeccccceEEEEeecCCCCccccccccc-ccc-----eee-c--
Confidence 99875 7777774 4567899999997766 5999999999999999875433211111100 110 000 0
Q ss_pred ccceeeeeccCCCcc-cCEEEEEEeCCcEEEEEEecCCCCeece
Q 019672 282 ADHHVLRNAFPAGVK-RASVSVITYNGYFVEYIFSINNCCESTW 324 (337)
Q Consensus 282 ~~~~~~~~~~~~~~~-~~~l~~~~~dg~~~~~~~~~~~~~~~~~ 324 (337)
+..++ .-.++.|+..+.+++|++-+...-++.+
T Consensus 425 ----------~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 425 ----------ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ----------ccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 11111 2357788888889999997776655433
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=2.6e-14 Score=127.59 Aligned_cols=284 Identities=15% Similarity=0.116 Sum_probs=181.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe----eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA----VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.|++.|.++..-.+|++|. |+.|. +..|| +..+.+...+ .+.+..+. ..... ++++. ..|.|-.
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~d-i~vGT------trN~iL~ 353 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGD-ILVGT------TRNFILQ 353 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEe--cCCCc-EEEee------ccceEEE
Confidence 6889999999999999888 66665 79999 4444443332 24444332 22222 45554 2455555
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
=.++++-.+....+......++.++. .++.++ |+.+++|+ ..+++.+...... ..+..++|.+ .+|.+.
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~---~~~~~fhpsg-~va~Gt-- 425 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP---AECADFHPSG-VVAVGT-- 425 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCc---eeEeeccCcc-eEEEee--
Confidence 56666666666666667888887654 444444 89999999 4555555443222 3455666767 777766
Q ss_pred CccEEEEEEccCCccc--c--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-CceeEeeccCCcceeEEEEEeecCC
Q 019672 157 TKGSVLVYNVMELHSH--C--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~--~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg 231 (337)
..|...+.|..+...+ | ..++++++|+|+|.+||.||.|+. |.||-+.. |.+..+..+.+ .++|+.|.||+|+
T Consensus 426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDS 503 (626)
T ss_pred ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCCCcEEEEeeeec-CceeEEeeecCCC
Confidence 5899999999886544 2 289999999999999999999997 68998854 55555555443 3789999999999
Q ss_pred CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672 232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 311 (337)
Q Consensus 232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~ 311 (337)
+ +|.+-|-|-.|-.|. ...-...+.-+.-.|......-.| .+...+... -.++++-....+.+++|-..|++++
T Consensus 504 ~---~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t~~c~lGF-~v~g~s~~t-~i~a~~rs~~~~~lA~gdd~g~v~l 577 (626)
T KOG2106|consen 504 Q---FLVSNSGDYEILYWK-PSECKQITSVKDVKWATYTCTLGF-EVFGGSDGT-DINAVARSHCEKLLASGDDFGKVHL 577 (626)
T ss_pred c---eEEeccCceEEEEEc-cccCcccceecceeeeeeEEEEEE-EEecccCCc-hHHHhhhhhhhhhhhccccCceEEE
Confidence 9 999999999999993 332222211111111110000000 011111111 1122222334577889999999999
Q ss_pred EEEe
Q 019672 312 YIFS 315 (337)
Q Consensus 312 ~~~~ 315 (337)
|...
T Consensus 578 f~yP 581 (626)
T KOG2106|consen 578 FSYP 581 (626)
T ss_pred Eccc
Confidence 9763
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.9e-16 Score=151.09 Aligned_cols=239 Identities=10% Similarity=0.108 Sum_probs=169.7
Q ss_pred CCCCCeEEEEEcCCCCE----EEEEcCCc-eEEEeCCCC------cEEEE--EeeCCEEEEEEccCC-CEEEEEeCCCCC
Q 019672 5 SSSYPVFFVSFNQDNSG----FALSTKDG-FKIFDSSTG------RLCYE--RAVGAFSIVEMLYSS-SLLAIVGAGEQP 70 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~----la~g~~~g-~~vw~~~~~------~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 70 (337)
.....-+.++|.+.|+. +|.|.+|| +.+||.... ..+.. .+.+.|.-+++.... |.++ +|+
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA--SGa--- 136 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA--SGA--- 136 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee--ccC---
Confidence 45567788999988876 78888888 699997652 12222 333555555554333 3444 332
Q ss_pred CCCCceEEEEECCCCCEEEEE---EcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672 71 SLSPRRLCLFNTTTGTALREL---NFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSP 143 (337)
Q Consensus 71 ~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 143 (337)
.|+.|.|||+..-+.-.++ ...+.|.+++|+.+- ++... ++++.|||++..+.+-.+..+........+.+
T Consensus 137 --~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 137 --DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred --CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 5999999999875443333 234689999998653 33332 67999999998877767655544333445666
Q ss_pred CCCc--cEEEEcCCCCccEEEEEEccCCc------ccccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672 144 SLNA--CFLAVPASTTKGSVLVYNVMELH------SHCEAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 144 ~~~~--~~la~~~~~~dg~v~i~d~~~~~------~~~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
+|++ ++++..+.+..-.|.+||++... ..|+..|.++.|.+.+ ++|++++.|+++ -+|+.++|+.+.++.
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i-i~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI-ICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe-eEecCCCceEeeecC
Confidence 6654 34444444456779999987543 2466889999999966 899999999996 599999999999886
Q ss_pred cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 215 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
.. ..-+..+.|+|... ..+++++-||.|.|+.+....
T Consensus 294 ~~--~nW~fdv~w~pr~P--~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQ--GNWCFDVQWCPRNP--SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CC--CcceeeeeecCCCc--chhhhheeccceeeeeeecCC
Confidence 42 34588999999877 589999999999999987654
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=6.9e-15 Score=135.20 Aligned_cols=264 Identities=12% Similarity=0.125 Sum_probs=181.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672 9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL 88 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~ 88 (337)
-|..++|-|||+.|+.+..+.+.+||...|.++.....|.-.+-++.++.++-.+.+|+ +|+.|.+|+.+- +-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-----aDK~VI~W~~kl-EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-----ADKSVIIWTSKL-EGI 87 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-----CceeEEEecccc-cce
Confidence 68899999999999999999999999999988877665544444444555555556664 799999998653 345
Q ss_pred EEEEcCCceeEEEEcCC--eEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEc
Q 019672 89 RELNFLTSILAVRLNKK--RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV 166 (337)
Q Consensus 89 ~~~~~~~~v~~i~~~~~--~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~ 166 (337)
..++|...|.++.|+|- .++.+.-+..-+|........ .+.....+++-++..|+++++.+- .+|+|.|-+-
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylalG~--~nGTIsiRNk 161 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLALGM--FNGTISIRNK 161 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEEec--cCceEEeecC
Confidence 67788889999999984 344444556778876543222 122234567778888999999876 5899999864
Q ss_pred cCCccc-------ccCceEEEEeCCCCC-----EEEEEeCCCcEEEEEEcCCCceeEeec-cCCcceeEEEEEeecCCCc
Q 019672 167 MELHSH-------CEAPLAAIVLSSNGM-----YIATASEQGTIIRVFLVSEATKSYSFR-RGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 167 ~~~~~~-------~~~~i~~~~~s~dg~-----~lat~s~dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~fs~dg~~ 233 (337)
...... ..++|.+++|+|... .++...-..+ +..+.+ +|+.+..-+ .+. .-.|+.+-|+|.
T Consensus 162 ~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~L~F---dP~CisYf~NGE- 235 (1081)
T KOG1538|consen 162 NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRALNF---DPCCISYFTNGE- 235 (1081)
T ss_pred CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeecccccCCC---CchhheeccCCc-
Confidence 322211 128999999999643 3444433333 233333 455443211 111 246889999999
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
|++.|+.|+-+++|--+ +. .-+.+.+.-..+|+.+- .|.+.+++.||.||++..|+
T Consensus 236 --y~LiGGsdk~L~~fTR~-Gv-----------rLGTvg~~D~WIWtV~~----------~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 236 --YILLGGSDKQLSLFTRD-GV-----------RLGTVGEQDSWIWTVQA----------KPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred --EEEEccCCCceEEEeec-Ce-----------EEeeccccceeEEEEEE----------ccCCceEEEEEccCeeehhh
Confidence 99999999999999532 11 22334444567888754 44558999999999999999
Q ss_pred E
Q 019672 314 F 314 (337)
Q Consensus 314 ~ 314 (337)
+
T Consensus 292 l 292 (1081)
T KOG1538|consen 292 L 292 (1081)
T ss_pred h
Confidence 8
No 161
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=4e-16 Score=137.77 Aligned_cols=219 Identities=16% Similarity=0.282 Sum_probs=174.1
Q ss_pred eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672 10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~ 87 (337)
=+.+.++.+|++++.|+.+| +..+|..++++..+.+. ..+..+.++++..++|.+ ..+.+.|||- .|..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA--------QK~y~yvYD~-~GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA--------QKKYVYVYDN-NGTE 202 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh--------hhceEEEecC-CCcE
Confidence 35789999999999988887 69999999999888764 345556677777776654 3688999985 4777
Q ss_pred EEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE
Q 019672 88 LRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY 164 (337)
Q Consensus 88 ~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~ 164 (337)
++.+.-...|..+.|-|.++++++ .|.++.-|+.+|+++..+.+... .+-.++.+|-+..+-++. ..|+|.+|
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G--~~~vm~qNP~NaVih~Gh--snGtVSlW 278 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG--RTDVMKQNPYNAVIHLGH--SNGTVSLW 278 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC--ccchhhcCCccceEEEcC--CCceEEec
Confidence 888877888999999888777665 56889999999999999887654 345567778888888777 48999999
Q ss_pred EccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672 165 NVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA 239 (337)
Q Consensus 165 d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las 239 (337)
...+...+ |.++|.+|+++|+|+++||++.|.. ++|||++.-..+.++.. +.+...++||..| +||.
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg----lLA~ 350 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG----LLAL 350 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc----ceee
Confidence 98877654 4599999999999999999999987 69999998887776653 3346778999877 4665
Q ss_pred EeCCCcEEEEe
Q 019672 240 TSSSGSLHVFS 250 (337)
Q Consensus 240 ~s~dg~v~iw~ 250 (337)
+-. ..|+||.
T Consensus 351 ~~G-~~v~iw~ 360 (545)
T KOG1272|consen 351 SYG-DHVQIWK 360 (545)
T ss_pred ecC-Ceeeeeh
Confidence 544 4699996
No 162
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=1.1e-13 Score=125.39 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=145.1
Q ss_pred CCeEEEEEcCCCCEEEEEcC--CceEEEeCC-CCcEEE--EEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 8 YPVFFVSFNQDNSGFALSTK--DGFKIFDSS-TGRLCY--ERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 8 ~~v~~~~fs~dg~~la~g~~--~g~~vw~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+....++++||+++|+++.. +++.+|+++ ++++.. ... ......+.+.++.+.++.+.. .++.|.+||
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~ 108 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSP 108 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEE
Confidence 45667899999999877643 457889886 444322 221 123445666666776666553 489999999
Q ss_pred CCCC----CEEEEEEcCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeee-------eecCCCCCceEEEEeeCCC
Q 019672 82 TTTG----TALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILD-------TIDTVPNLKGLCAFSPSLN 146 (337)
Q Consensus 82 ~~~~----~~~~~~~~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 146 (337)
+.+. +.+..+........+.++++ .++++. ++.|.+||+.+...+. .+..... ...+.++|+
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~---p~~~~~~pd 185 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG---PRHMVFHPN 185 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC---CceEEECCC
Confidence 8643 22333333334566777765 454554 6899999997643221 1112222 233455677
Q ss_pred ccEEEEcCCCCccEEEEEEccC--Cc--cccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-e-
Q 019672 147 ACFLAVPASTTKGSVLVYNVME--LH--SHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-K- 209 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~--~~--~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-~- 209 (337)
+.++++... .+++|.+||+.. +. ..+. .....+.|+|||++|+++......|.+|++.... .
T Consensus 186 g~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 186 QQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred CCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 778776653 489999999973 22 1111 1123588999999999987643457899986433 2
Q ss_pred --eEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEEecCCC
Q 019672 210 --SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGFA 254 (337)
Q Consensus 210 --~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw~l~~~ 254 (337)
+.....+ .....++|+|||+ +|+++.. +++|.||+++..
T Consensus 265 ~~~~~~~~~---~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 265 SFEGHQPTE---TQPRGFNIDHSGK---YLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred EEeEEEecc---ccCCceEECCCCC---EEEEEEccCCcEEEEEEcCC
Confidence 2222111 1235689999999 7777665 899999998643
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3e-15 Score=136.84 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=97.0
Q ss_pred ccEEEEEEccCCcccc---------cCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCce-------eEeeccCCcce
Q 019672 158 KGSVLVYNVMELHSHC---------EAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK-------SYSFRRGTYPS 220 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~---------~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~-------~~~~~~~~~~~ 220 (337)
.|.|.||+++..-.+. ...|+.+.|+| |..+||.+++||. |++|.+..+-. ...+. .|..
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt--~h~e 678 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILT--IHGE 678 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeee--cccc
Confidence 5777777776543322 16689999999 7889999999997 79999875532 12232 2356
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 300 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l 300 (337)
.|+++.|+|-.. +.||+++.|-||+|||+.+.+...+ +.+.....+.-.|++++ .++
T Consensus 679 KI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~-------l~gHtdqIf~~AWSpdG--------------r~~ 735 (1012)
T KOG1445|consen 679 KITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSR-------LVGHTDQIFGIAWSPDG--------------RRI 735 (1012)
T ss_pred eEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhhe-------eccCcCceeEEEECCCC--------------cce
Confidence 799999999776 5999999999999999988765332 22233344555676654 899
Q ss_pred EEEEeCCcEEEEEE
Q 019672 301 SVITYNGYFVEYIF 314 (337)
Q Consensus 301 ~~~~~dg~~~~~~~ 314 (337)
++.|.||++++|+=
T Consensus 736 AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEP 749 (1012)
T ss_pred eeeecCceEEEeCC
Confidence 99999999999975
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.2e-13 Score=130.74 Aligned_cols=281 Identities=17% Similarity=0.207 Sum_probs=174.8
Q ss_pred EEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee--CCEEEEEEccCCC---EEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672 13 VSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (337)
Q Consensus 13 ~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~v~iwd~~~~~~ 87 (337)
..|++|++++.....+.++||.+.+++.+..... ..+.-+.+..... .++..+ .||+|++||...+.+
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGEL 94 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcEE
Confidence 3689999999999999999999999988765433 2333334444433 233333 599999999999888
Q ss_pred EEEEEcCCceeEEEEc--------------C-----------------------------------------------Ce
Q 019672 88 LRELNFLTSILAVRLN--------------K-----------------------------------------------KR 106 (337)
Q Consensus 88 ~~~~~~~~~v~~i~~~--------------~-----------------------------------------------~~ 106 (337)
+.++..+-++.++.+. . ..
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 7776543322221110 0 01
Q ss_pred EEEEECCeEEEEECCCCeeeeee--c-CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC--Cc-cc------cc
Q 019672 107 LVIVLREKTYIYDANTLAILDTI--D-TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--LH-SH------CE 174 (337)
Q Consensus 107 ~~v~~d~~i~i~d~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~--~~-~~------~~ 174 (337)
..++.+..+++|+...+.. +.. . ...+.....+.+.+|.+.++|++. .||.|.+|.--. .. .. |.
T Consensus 175 ~~i~~~~~~~~~~v~~~~~-~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d--~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTK-HTSSRDITVHHTFNITCVALSPNERYLAAGD--SDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred EEEEEeeeEEEEEecccce-eeccchhhhhhcccceeEEeccccceEEEec--cCCcEEEEeccccccccccceEEEecc
Confidence 2222355677777765431 111 0 011222246677778888999887 489999995332 11 11 22
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
.+|++++|++||.+|.+|+..|-+ -+|.+.++++. -+.| -.++|..+.+|||+. +.+..-.|+.|++-....-
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VL-v~Wq~~T~~kq-fLPR--Lgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVL-VLWQLETGKKQ-FLPR--LGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cccceeEEecCCceEeecccceEE-EEEeecCCCcc-cccc--cCCeeEEEEEcCCCC---eEEEEecCceEEEEeccch
Confidence 799999999999999999999965 59999998832 2322 246799999999999 8889999999999987543
Q ss_pred cccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 255 INQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
..... ..+..|..- +. ...-..+...+...+..+.++-.+..|.++.|++-.++..
T Consensus 325 ~~k~t-------Isgi~~~~~-~~--k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 325 EIKST-------ISGIKPPTP-ST--KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred hhhhh-------ccCccCCCc-cc--cccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 32111 111111000 00 0000001111222344467777788899999988766554
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.1e-14 Score=136.05 Aligned_cols=278 Identities=15% Similarity=0.173 Sum_probs=174.5
Q ss_pred CeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEEEEEee-----CCEEEEEEccCCCE-EEEEeCCCCCCCCCceEEEEE
Q 019672 9 PVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSL-LAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~g~~~~~~d~~v~iwd 81 (337)
+=..+.|+|=..+++++.+ ..++|||.+.++.+...+. ..+..+++....+. +.+++. .||.||||+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas------~dGvIRIwk 1139 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS------SDGVIRIWK 1139 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec------cCceEEEec
Confidence 3456788888888888875 4579999998887655443 23444555444332 233333 699999997
Q ss_pred CC-C----CCEEEEEEc-------CCce-eEEEEc--CCeEEEEEC-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672 82 TT-T----GTALRELNF-------LTSI-LAVRLN--KKRLVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 82 ~~-~----~~~~~~~~~-------~~~v-~~i~~~--~~~~~v~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
-. . .+.+..... .... .-+.|. ..++++.+| ..|+|||....+.++.+.... ...+.+++.+-
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADL 1218 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-Cccceeecccc
Confidence 42 2 122222210 0000 112332 345555553 489999999888887775432 34566777654
Q ss_pred Cc-cEEEEcCCCCccEEEEEEccCCcc--------ccc--CceEEEEeCCCCCE-EEEEeCCCcEEEEEEcCCCceeEee
Q 019672 146 NA-CFLAVPASTTKGSVLVYNVMELHS--------HCE--APLAAIVLSSNGMY-IATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 146 ~~-~~la~~~~~~dg~v~i~d~~~~~~--------~~~--~~i~~~~~s~dg~~-lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
.+ ..++. |. .||.|++||.+.... .|. .+|..+.+.++|-. |++||.+|. |++||++.......+
T Consensus 1219 ~~gn~i~A-Gf-aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1219 VHGNIIAA-GF-ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFL 1295 (1387)
T ss_pred cCCceEEE-ee-cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccc
Confidence 44 45554 44 699999999875432 133 44999999997765 999999997 799999875332222
Q ss_pred ccCCc---ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeec
Q 019672 214 RRGTY---PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA 290 (337)
Q Consensus 214 ~~~~~---~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 290 (337)
....+ .+.+++|..+++.. .+|+|+. +.|+||++....-... ....+|++...+.. - .
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~~l~~~-k~n~~F~~q~~gs~----s----------c 1356 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGEQLNII-KYNPGFMGQRIGSV----S----------C 1356 (1387)
T ss_pred eeeeccccCccceeeeeccCCC---eeeecCc-ceEEEEecChhhhccc-ccCcccccCcCCCc----c----------e
Confidence 21111 12488999999999 9999998 9999999876433221 11123333332222 1 1
Q ss_pred cCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 291 FPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 291 ~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
++++|-.-.+++|+.|.+|.+|.-.
T Consensus 1357 L~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eeecchhHhhhhccCCceEEEeecC
Confidence 2234444568899999999999754
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.63 E-value=3.8e-13 Score=124.30 Aligned_cols=285 Identities=14% Similarity=0.112 Sum_probs=178.7
Q ss_pred CCCCCCeEEEEEcCCCCE-EEEEcCCceEEEeCCCCcEEEE-----EeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672 4 QSSSYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLCYE-----RAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~-la~g~~~g~~vw~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
.+|++=|+++.|+|.+.. |+++.++...+|..+...-+.. ...+ ..+.....++++...+++.| .-|
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g-----~~G 338 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG-----RTG 338 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec-----ccC
Confidence 378888999999999954 5555566679998765532221 1111 12244455555544344432 468
Q ss_pred eEEEEECCCC-CEEEE--EE-cCCceeEEEEcC--CeEEEEE-CCeEEEEECC-CCeeeeeecC-CCCCceEEEEeeCCC
Q 019672 76 RLCLFNTTTG-TALRE--LN-FLTSILAVRLNK--KRLVIVL-REKTYIYDAN-TLAILDTIDT-VPNLKGLCAFSPSLN 146 (337)
Q Consensus 76 ~v~iwd~~~~-~~~~~--~~-~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 146 (337)
..++|-.+.. ....+ +. |-..|.+|.|+| .+++.++ |.+-++|--- ..+.-+++.- .-+...+.|++.-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 8999983332 22222 22 334799999985 4444444 8888888654 1122344421 123334556665442
Q ss_pred ccEEEEcCCCCccEEEEEEccC-------------------------------------------Ccc----c-------
Q 019672 147 ACFLAVPASTTKGSVLVYNVME-------------------------------------------LHS----H------- 172 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~-------------------------------------------~~~----~------- 172 (337)
...+++++ +...+++|+... +.. .
T Consensus 419 ~~~FVSgA--dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 419 DLQFVSGA--DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred Cceeeecc--cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 33344433 456667776521 000 0
Q ss_pred ---------------------------ccCceEEEEeCCCCCEEEEEeCC----CcEEEEEEcCCCceeEeeccCCccee
Q 019672 173 ---------------------------CEAPLAAIVLSSNGMYIATASEQ----GTIIRVFLVSEATKSYSFRRGTYPST 221 (337)
Q Consensus 173 ---------------------------~~~~i~~~~~s~dg~~lat~s~d----g~~i~vwd~~~~~~~~~~~~~~~~~~ 221 (337)
|...|.+++.||+|+++||++.. ..+|++|+..+-..++++. .|.-.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~--~HsLT 574 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE--GHSLT 574 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec--ccceE
Confidence 00568999999999999999854 2468999999988887774 34567
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS 301 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~ 301 (337)
|+.|+|||||+ +|++.|.|.++.+|.......... . +. .+..+..-+|+.. +.|+..+.+
T Consensus 575 VT~l~FSpdg~---~LLsvsRDRt~sl~~~~~~~~~e~-----~-fa-~~k~HtRIIWdcs----------W~pde~~Fa 634 (764)
T KOG1063|consen 575 VTRLAFSPDGR---YLLSVSRDRTVSLYEVQEDIKDEF-----R-FA-CLKAHTRIIWDCS----------WSPDEKYFA 634 (764)
T ss_pred EEEEEECCCCc---EEEEeecCceEEeeeeecccchhh-----h-hc-cccccceEEEEcc----------cCcccceeE
Confidence 99999999999 999999999999999754432211 0 11 1222333455553 356668899
Q ss_pred EEEeCCcEEEEEEecC
Q 019672 302 VITYNGYFVEYIFSIN 317 (337)
Q Consensus 302 ~~~~dg~~~~~~~~~~ 317 (337)
+++-|.+|.+|.....
T Consensus 635 TaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 635 TASRDKKVKVWEEPDL 650 (764)
T ss_pred EecCCceEEEEeccCc
Confidence 9999999999998666
No 167
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.63 E-value=1.6e-13 Score=126.72 Aligned_cols=289 Identities=13% Similarity=0.111 Sum_probs=165.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEE-cCCceEEEeCCCCc----EEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672 4 QSSSYPVFFVSFNQDNSGFALS-TKDGFKIFDSSTGR----LCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g-~~~g~~vw~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (337)
++|-..|..++|+|.|++|.+. .+..-|+|-.-..+ .+...+ ++++.++++... -+.+++++ ..+.
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~--~~~FVSgA-----dEKV 430 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE--DLQFVSGA-----DEKV 430 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC--Cceeeecc-----ccee
Confidence 4788899999999999996655 45556887543222 122222 344555555543 34455653 5678
Q ss_pred EEEEECCCCC----------E---EEEEEcCCceeEEEEcCCeEEE-EE-CCeE--EEEEC------------CCCeeee
Q 019672 77 LCLFNTTTGT----------A---LRELNFLTSILAVRLNKKRLVI-VL-REKT--YIYDA------------NTLAILD 127 (337)
Q Consensus 77 v~iwd~~~~~----------~---~~~~~~~~~v~~i~~~~~~~~v-~~-d~~i--~i~d~------------~~~~~~~ 127 (337)
+|+++...+- + .........|-.+-++.+-+.- .. ++.. .-+.. .....+.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 8998864320 0 0111112233333333322221 00 1100 00111 0000010
Q ss_pred e--e-----cCCCCCceEEEEeeCCCccEEEEcCCC---CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEE
Q 019672 128 T--I-----DTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATA 192 (337)
Q Consensus 128 ~--~-----~~~~~~~~~~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~ 192 (337)
. + +...+...+.+++.+|++.++|++-.. +--.|++|+..+-... |.-.|+.++|||||++|+++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence 0 0 111234567888889999999987521 2356899998876543 44789999999999999999
Q ss_pred eCCCcEEEEEEcCCCceeEeec---cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc
Q 019672 193 SEQGTIIRVFLVSEATKSYSFR---RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS 269 (337)
Q Consensus 193 s~dg~~i~vwd~~~~~~~~~~~---~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~ 269 (337)
|.|.+ ..+|........ .++ ...|..-|.++.|+||++ ++||+|.|.+|+||........ ++..
T Consensus 591 sRDRt-~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~---~FaTaSRDK~VkVW~~~~~~d~--------~i~~ 657 (764)
T KOG1063|consen 591 SRDRT-VSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEK---YFATASRDKKVKVWEEPDLRDK--------YISR 657 (764)
T ss_pred ecCce-EEeeeeecccch-hhhhccccccceEEEEcccCcccc---eeEEecCCceEEEEeccCchhh--------hhhh
Confidence 99987 589998654321 121 223455699999999999 9999999999999998765321 1111
Q ss_pred cccccceeecccccceeeeeccC-CCc-ccCEEEEEEeCCcEEEEEEecCC
Q 019672 270 ILPESVNEVLDPADHHVLRNAFP-AGV-KRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 270 ~~~~~~~~~w~~~~~~~~~~~~~-~~~-~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
+....+... .-.+...+ ... +...+.+|-..|.+.+|+.+.++
T Consensus 658 ~a~~~~~~a------VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 658 FACLKFSLA------VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred hchhccCCc------eeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 100000000 00011111 122 23467889999999999987443
No 168
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.5e-14 Score=125.21 Aligned_cols=194 Identities=15% Similarity=0.196 Sum_probs=137.3
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-CEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeee
Q 019672 50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAIL 126 (337)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~ 126 (337)
.++++.+++..++..+ .|+++|+|++..- ....+..++.+|.++.|+++...+++ .+..+||+++++..+
T Consensus 148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeecc-------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence 3455555555555544 5999999995444 44455677889999999999855554 449999999998655
Q ss_pred eeecCCCCC--ceEEEEeeCC--CccEEEEcCCCCccEEEEEEccCCcc---------ccc-CceEEEEeCCCCCEEEEE
Q 019672 127 DTIDTVPNL--KGLCAFSPSL--NACFLAVPASTTKGSVLVYNVMELHS---------HCE-APLAAIVLSSNGMYIATA 192 (337)
Q Consensus 127 ~~~~~~~~~--~~~~~~~~~~--~~~~la~~~~~~dg~v~i~d~~~~~~---------~~~-~~i~~~~~s~dg~~lat~ 192 (337)
......... ...|-+..++ +..++|+.-. .-+.|..||+...+. ... ..|+++++|+||+++|.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecC-CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 554321111 1123343333 2334444432 345677777643322 112 689999999999999999
Q ss_pred eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 193 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 193 s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
+.||.+ -|++..+.+.++-.++. |...|+.|.|+||.+ ++++-|.+.+++|..+...+.
T Consensus 300 T~dGsV-ai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr---~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 300 TMDGSV-AIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSR---YLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred ccCCcE-EEEEeceeeeeEeehhh-heeeeeeEEEcCCcC---cccccccCCceeEEEEeeccc
Confidence 999984 79999999998877654 466899999999999 999999999999999876443
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=7.2e-13 Score=114.42 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=146.5
Q ss_pred ceEEEEECCCCCEEEEE-EcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672 75 RRLCLFNTTTGTALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (337)
...+++........... .....|..+.|+...++++. ...+++++++....+..+..+ ..++++..+.+ .|
T Consensus 26 ~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr~--RL 100 (391)
T KOG2110|consen 26 DGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNRK--RL 100 (391)
T ss_pred CceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEccc--eE
Confidence 44666665543321111 12235677778877777776 246999999888777776543 35778887755 33
Q ss_pred EEcCCCCccEEEEEEccCCccccc--------CceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcce
Q 019672 151 AVPASTTKGSVLVYNVMELHSHCE--------APLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
++.- ...|.|||+++++.+|+ ..+.++++++.+.+||.-+ ..|. |.|||+.+-+....+. .|..
T Consensus 101 vV~L---ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd-V~l~d~~nl~~v~~I~--aH~~ 174 (391)
T KOG2110|consen 101 VVCL---EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD-VVLFDTINLQPVNTIN--AHKG 174 (391)
T ss_pred EEEE---cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce-EEEEEcccceeeeEEE--ecCC
Confidence 3332 34599999999998876 3355566666667988643 2466 5799999988888775 4678
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCc-EEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCE
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS 299 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~-v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 299 (337)
++-+|+|||+|. +||++|+.|| ||||.+..+.... .|..++.|.. ...+.|+++...
T Consensus 175 ~lAalafs~~G~---llATASeKGTVIRVf~v~~G~kl~------eFRRG~~~~~-------------IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 175 PLAALAFSPDGT---LLATASEKGTVIRVFSVPEGQKLY------EFRRGTYPVS-------------IYSLSFSPDSQF 232 (391)
T ss_pred ceeEEEECCCCC---EEEEeccCceEEEEEEcCCccEee------eeeCCceeeE-------------EEEEEECCCCCe
Confidence 899999999999 9999999999 7999997664321 1111222211 233455778899
Q ss_pred EEEEEeCCcEEEEEEecCC
Q 019672 300 VSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 300 l~~~~~dg~~~~~~~~~~~ 318 (337)
|.+.+..++|++|.|+...
T Consensus 233 L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEecCCCeEEEEEecccc
Confidence 9999999999999997654
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.3e-13 Score=132.71 Aligned_cols=234 Identities=14% Similarity=0.203 Sum_probs=154.2
Q ss_pred CCCCeEEEEEc--CCCCEEEEEcCCce-EEEe-CCC----CcEEEEEe---e------CCEEEEEEccCCCEEEEEeCCC
Q 019672 6 SSYPVFFVSFN--QDNSGFALSTKDGF-KIFD-SST----GRLCYERA---V------GAFSIVEMLYSSSLLAIVGAGE 68 (337)
Q Consensus 6 ~~~~v~~~~fs--~dg~~la~g~~~g~-~vw~-~~~----~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~g~ 68 (337)
....|+.+.+= .|..++.+|+.||+ |||+ ..+ -+++.... . +.-.++++...+..+ +++|
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~L-l~tG-- 1184 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHL-LVTG-- 1184 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeE-EecC--
Confidence 45568888774 35567889999986 9995 222 23332221 0 111344554444444 4455
Q ss_pred CCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEc--CCeEEEEE--CCeEEEEECCCCe---eeeeecCCCCCceEE
Q 019672 69 QPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLN--KKRLVIVL--REKTYIYDANTLA---ILDTIDTVPNLKGLC 139 (337)
Q Consensus 69 ~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~---~~~~~~~~~~~~~~~ 139 (337)
.-+.|+|||..+.+....+...+ -|+++.-+ ...+++++ ||.+++||.+... .+...+.+.....++
T Consensus 1185 ----d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1185 ----DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred ----CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 26899999999888888776655 45555432 22344444 9999999997542 344445554444466
Q ss_pred EEeeCCCccE-EEEcCCCCccEEEEEEccCCccc-------cc--C-ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672 140 AFSPSLNACF-LAVPASTTKGSVLVYNVMELHSH-------CE--A-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 140 ~~~~~~~~~~-la~~~~~~dg~v~i~d~~~~~~~-------~~--~-~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~ 208 (337)
-++..+.+.. |++++ .+|.|++||++..... +- + .++++..+++...+|+|+. + .|+||++. |+
T Consensus 1261 ~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~-G~ 1335 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS-GE 1335 (1387)
T ss_pred eEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC-hh
Confidence 6665543333 55555 6999999999974221 11 3 5999999999999999998 5 47999985 55
Q ss_pred eeEeeccC-----CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 209 KSYSFRRG-----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 209 ~~~~~~~~-----~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
.+..++.. .....+.|++|+|--- +||+|+.|.+|.||..++.
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~---llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRL---LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhH---hhhhccCCceEEEeecCCc
Confidence 54444321 1123478999999987 9999999999999987654
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.1e-13 Score=115.51 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=138.2
Q ss_pred EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEE--EEE-CCeEEE
Q 019672 42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLV--IVL-REKTYI 117 (337)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~--v~~-d~~i~i 117 (337)
.+.+.....++.+...+.++++.. .+|.|.|||+.|...-..+..+ .+|.+++|++++-. .++ |..|.+
T Consensus 19 ~tld~~~a~~~~Fs~~G~~lAvGc-------~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 19 HTLDNPLAECCQFSRWGDYLAVGC-------ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred eeccCCccceEEeccCcceeeeec-------cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 334333334444544455555433 5999999999987765555544 49999999987533 333 889999
Q ss_pred EECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC--ccccc-------CceEEEEeCCCCCE
Q 019672 118 YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--HSHCE-------APLAAIVLSSNGMY 188 (337)
Q Consensus 118 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--~~~~~-------~~i~~~~~s~dg~~ 188 (337)
||+..+.+++.+... .+.--+.+.+...+..+|+.-. .. -.+.++... ..+.. ..-.+..|++.|++
T Consensus 92 wDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~~-~s--p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIME-ES--PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred EeccCCCceeEEEcc-CccceeeeccccCCeEEEEEec-CC--cEEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence 999999999888753 3445556666666667776542 22 333333322 22211 22334578999999
Q ss_pred EEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 189 IATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 189 lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
|.+|...|. +.++|..+-+++..++... ...|..+.|+..|. +|+..+.|..|+.|+++.
T Consensus 168 IitGtsKGk-llv~~a~t~e~vas~rits-~~~IK~I~~s~~g~---~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 168 IITGTSKGK-LLVYDAETLECVASFRITS-VQAIKQIIVSRKGR---FLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEecCcce-EEEEecchheeeeeeeech-heeeeEEEEeccCc---EEEEecCCceEEEEehhh
Confidence 999999998 5799999999988886432 35689999999999 999999999999999874
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.1e-13 Score=117.45 Aligned_cols=293 Identities=10% Similarity=0.059 Sum_probs=182.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC------cEEEE-EeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCc
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG------RLCYE-RAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~------~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~ 75 (337)
.|.+-|+.+.|+.++++|++|+++. ++||+++.- +.+.- .+.|...+.++.|+. |..++.++ .++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~ 127 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWG 127 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------Ccc
Confidence 4567799999999999999999986 699997532 11211 112223445555655 44444444 599
Q ss_pred eEEEEECCCCCEEEEEEcCC---ceeEEEEcC--CeEEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCcc
Q 019672 76 RLCLFNTTTGTALRELNFLT---SILAVRLNK--KRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~~---~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
+|.+-|+++.+.+..+.+.. .|..+..+| +.+++++ ++.|.+||++..+ ...-+.....+......-++|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999999998887776654 788877766 4455555 7899999998654 222222112223344445566554
Q ss_pred E-EEEcCCCCccEEEEEEccCCccc----------cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672 149 F-LAVPASTTKGSVLVYNVMELHSH----------CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 215 (337)
Q Consensus 149 ~-la~~~~~~dg~v~i~d~~~~~~~----------~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~ 215 (337)
. |++.+ ..+-+.+||.+..... +. ..-..+.|+|+|+.|.+--..-.- -+||+-+..+ ..|+.
T Consensus 208 ~Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P-~~~D~~S~R~-~V~k~ 283 (609)
T KOG4227|consen 208 ALILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP-LYFDFISQRC-FVLKS 283 (609)
T ss_pred eeEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC-EEeeeecccc-eeEec
Confidence 4 45554 4677999999865431 11 234678899999988765332222 3688876433 22322
Q ss_pred CCcc------eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC---CCccccccccccccc--cee-eccccc
Q 019672 216 GTYP------STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR---GGRTSSILGSILPES--VNE-VLDPAD 283 (337)
Q Consensus 216 ~~~~------~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~---~~~~~~~~~~~~~~~--~~~-~w~~~~ 283 (337)
.+.+ ..|.+++|--|- .+++||++-.|++|.+....+.-. ..+.. ...|.. +.. ..-..+
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~----~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~----~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY----TVATGSDHWGIHIWKLPRANDSYGFTQIGHDE----EEMPSEIFIEKELTVLRG 355 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce----eeeccCcccceEEEecCCCccccCccccCcch----hhCchhheecceeEEEec
Confidence 2222 358899998665 599999999999999976544211 00000 011110 111 122233
Q ss_pred ceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 284 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
++-+.+.+.+.+.++.|++.+.+..+++|.=.
T Consensus 356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccccccceeecCCcceEeccchhhheeccccc
Confidence 45556777788888888888899999999543
No 173
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.1e-12 Score=110.81 Aligned_cols=243 Identities=14% Similarity=0.167 Sum_probs=145.6
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE----EEEEE-cCCceeEEEEc-CC-e--EEEEE-CCeEEEEE
Q 019672 50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA----LRELN-FLTSILAVRLN-KK-R--LVIVL-REKTYIYD 119 (337)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~----~~~~~-~~~~v~~i~~~-~~-~--~~v~~-d~~i~i~d 119 (337)
-.+.+.|.+..++.++ .|.+|+|||.+...- ..... +.+.|..|.|. |. + ++++. |+++.||.
T Consensus 17 hdVs~D~~GRRmAtCS-------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCS-------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred eeeeecccCceeeecc-------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3445666677777665 499999999754432 22333 45688888884 32 2 33333 99999997
Q ss_pred CCCC---------eeeeeecCCCCCceEE--EEeeCCCccEEEEcCCCCccEEEEEEccCCccc----------------
Q 019672 120 ANTL---------AILDTIDTVPNLKGLC--AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH---------------- 172 (337)
Q Consensus 120 ~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------------- 172 (337)
=... ....++. .....++ .|+|..-+..+|+++ .||.++||++.....+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~--DsrssV~DV~FaP~hlGLklA~~~--aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV--DSRSSVTDVKFAPKHLGLKLAAAS--ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred ecccccccccceeEEEEEee--cCCcceeEEEecchhcceEEEEec--cCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 5211 1112222 1222343 555555678899988 5999999987543211
Q ss_pred --ccCceEEEEeCCC---CCEEEEEeCC-----CcEEEEEEcCCCc----eeEeeccCCcceeEEEEEeecCC-CcccEE
Q 019672 173 --CEAPLAAIVLSSN---GMYIATASEQ-----GTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQSM-QFQDIL 237 (337)
Q Consensus 173 --~~~~i~~~~~s~d---g~~lat~s~d-----g~~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~fs~dg-~~~~~l 237 (337)
+..+..|+.|+|. ..+||.|+.+ +. ++||....+. .+.++. .+..+|++|+|.|+- ....+|
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCceeeE
Confidence 1266889999974 4589998877 24 3688765432 233443 356789999999972 211279
Q ss_pred EEEeCCCcEEEEecCCCcccCC------CCccccc---ccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672 238 VATSSSGSLHVFSPGFAINQRR------GGRTSSI---LGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY 308 (337)
Q Consensus 238 as~s~dg~v~iw~l~~~~~~~~------~~~~~~~---~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 308 (337)
|+++.|| |+||.++....+.. ......+ ....+..+-.++|...- ..-+..|.+.+.||.
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w----------NmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW----------NMTGTILSSTGDDGC 311 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE----------eeeeeEEeecCCCce
Confidence 9999999 99999985332110 0000010 01112233345555422 122356778888999
Q ss_pred EEEEEEecC
Q 019672 309 FVEYIFSIN 317 (337)
Q Consensus 309 ~~~~~~~~~ 317 (337)
++.|.-.-.
T Consensus 312 VRLWkany~ 320 (361)
T KOG2445|consen 312 VRLWKANYN 320 (361)
T ss_pred eeehhhhhh
Confidence 999976433
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.59 E-value=1e-11 Score=113.87 Aligned_cols=237 Identities=16% Similarity=0.235 Sum_probs=165.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCc-EEEEEee-C--CEEEEEE-ccCCCEEEEEeCCCCCCCCCceE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGR-LCYERAV-G--AFSIVEM-LYSSSLLAIVGAGEQPSLSPRRL 77 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~-~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~g~~~~~~d~~v 77 (337)
..+...|.++.|++.+..++.++.+ .+.+|+..... ....... . .+..... ..+.+..+.... ..|+.+
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~ 136 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-----SLDGTV 136 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-----CCCccE
Confidence 3567889999999999998888754 57999988775 4444332 1 2333343 333442333322 148999
Q ss_pred EEEECCC-CCEEEEEEc-CCceeEEEEcCCeE--EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc-EE
Q 019672 78 CLFNTTT-GTALRELNF-LTSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FL 150 (337)
Q Consensus 78 ~iwd~~~-~~~~~~~~~-~~~v~~i~~~~~~~--~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 150 (337)
.+||... ......+.. ...|..+.++++.. +... ++.+++|++..+..+..+..+.. .+.++.+.|++. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcCCcceEE
Confidence 9999987 555555544 45788899988763 3332 78999999998777777765333 455566657766 44
Q ss_pred EEcCCCCccEEEEEEccCCcccc-c-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce-eEeeccCCcceeEE
Q 019672 151 AVPASTTKGSVLVYNVMELHSHC-E-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIF 223 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~-~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~ 223 (337)
+.++ .|+.|.+||...+.... . ... ...|+|++.++++++.|+. +++|++..... +..+ .+ +...|.
T Consensus 215 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~-~~-~~~~v~ 288 (466)
T COG2319 215 ASGS--SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTL-SG-HSSSVL 288 (466)
T ss_pred EEec--CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEE-ec-CCccEE
Confidence 4434 59999999988555443 1 222 2289999999999999997 69999987765 4444 22 356799
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
++.|+|++. .+++++.|+.+++|++.....
T Consensus 289 ~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 289 SVAFSPDGK---LLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred EEEECCCCC---EEEEeeCCCcEEEEEcCCCce
Confidence 999999888 788899999999998876543
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.6e-12 Score=121.81 Aligned_cols=288 Identities=13% Similarity=0.165 Sum_probs=181.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEe-CC-CC-cE---EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFD-SS-TG-RL---CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~-~~-~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
|..+++|.+++|.++++|+|-.+| +.+|. .. .. +. ++.++...+..+.+..++.. +.+|| ..+.+.
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~--LlSGG-----~E~VLv 276 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY--LLSGG-----REGVLV 276 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce--Eeecc-----cceEEE
Confidence 344589999999999999998877 68995 33 11 11 23333345555555444444 44554 578999
Q ss_pred EEECCCCCEEEEEEcCCceeEEEEcCCeEEE---EECCeEEEEECCCCeeeeeecCCCCC--------ceE-EEEeeCCC
Q 019672 79 LFNTTTGTALRELNFLTSILAVRLNKKRLVI---VLREKTYIYDANTLAILDTIDTVPNL--------KGL-CAFSPSLN 146 (337)
Q Consensus 79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v---~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~ 146 (337)
+|.+++++...-....++|..+.++++.-.. ..|+.|.+-...++....++.+...+ .++ ..++.+|.
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 9999999966666678899999998875433 33999999988777666565432221 222 34555664
Q ss_pred ccEEEEcCCCCccEEEEEEccCCcccc----------------cCceEEEEeCCCCCEEEEEeC--------CCc-EEEE
Q 019672 147 ACFLAVPASTTKGSVLVYNVMELHSHC----------------EAPLAAIVLSSNGMYIATASE--------QGT-IIRV 201 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~~~~~~----------------~~~i~~~~~s~dg~~lat~s~--------dg~-~i~v 201 (337)
-..++..+ ..|.|++||+.+.+... .-.+++++.+..|.+++|.-. ||. .+|+
T Consensus 357 ~~~~vln~--~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 357 TNSLVLNG--HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCceeecC--CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 45666777 48999999998655321 146889999999999999742 332 3588
Q ss_pred EEcCCCcee----EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccccee
Q 019672 202 FLVSEATKS----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE 277 (337)
Q Consensus 202 wd~~~~~~~----~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (337)
|-......- .++...|..+.+..+.++|... +..++++.||.++||-+...++..+. ++.|.......+
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~KiW~~~~~~n~~k~--~s~W~c~~i~sy--- 507 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDFKIWVFTDDSNIYKK--SSNWTCKAIGSY--- 507 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeEEEEEEecccccCcC--ccceEEeeeecc---
Confidence 976544432 2233333333333333333332 37999999999999999776664421 112111111100
Q ss_pred ecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 278 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 278 ~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
++.-..+..+..+ ..+++.+.|+.+.+|+.+.
T Consensus 508 ------~k~~i~a~~fs~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 508 ------HKTPITALCFSQD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ------ccCcccchhhcCC-CcEEEEecCCEEEEecCCC
Confidence 0011122233434 3899999999999999876
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.58 E-value=3.7e-13 Score=112.82 Aligned_cols=226 Identities=12% Similarity=0.172 Sum_probs=151.6
Q ss_pred CCCCCCeEEEEEcCCCC----EEEEEcCCceEEEeCCCC--cEEE----EEee---CCEEEEEEcc---CCCEEEEEeCC
Q 019672 4 QSSSYPVFFVSFNQDNS----GFALSTKDGFKIFDSSTG--RLCY----ERAV---GAFSIVEMLY---SSSLLAIVGAG 67 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~----~la~g~~~g~~vw~~~~~--~~~~----~~~~---~~~~~~~~~~---~~~~~~~~~~g 67 (337)
..+..|++-+.|.||.. -|.+.+.+.+|+|.+... +... .... .......+.+ +++++...+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-- 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-- 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence 36788999999999873 255566788999987642 2211 1110 1112233333 345555544
Q ss_pred CCCCCCCceEEEEECCCCCE----EEEEEcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCC-CceE
Q 019672 68 EQPSLSPRRLCLFNTTTGTA----LRELNFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPN-LKGL 138 (337)
Q Consensus 68 ~~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~ 138 (337)
-|.+..|||++++.. ...+.|..+|.+|+|..+ .++.++ ||++++||++..+.-..+...++ ...+
T Consensus 171 -----iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 171 -----IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred -----ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 499999999999732 334678889999999763 333333 99999999998765544443444 3456
Q ss_pred EEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCce-
Q 019672 139 CAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATK- 209 (337)
Q Consensus 139 ~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~- 209 (337)
.-+++++. -.++|+-.. ....|.|.|++.... .|++.|+.++|.|. ...|+|+++|... -+||+...-.
T Consensus 246 lRLswnkqDpnymATf~~-dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~ 323 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAM-DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRE 323 (364)
T ss_pred eeeccCcCCchHHhhhhc-CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE-EEEeccccccc
Confidence 67776553 346676654 467899999987543 26699999999994 5689999999874 6999975432
Q ss_pred -----eEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672 210 -----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 210 -----~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d 243 (337)
+-.+. ..++|+.+.|+|... ++++.+...
T Consensus 324 ~~~dPilay~---a~~EVNqi~Ws~~~~--Dwiai~~~k 357 (364)
T KOG0290|consen 324 NGEDPILAYT---AGGEVNQIQWSSSQP--DWIAICFGK 357 (364)
T ss_pred CCCCchhhhh---ccceeeeeeecccCC--CEEEEEecC
Confidence 11111 235799999997655 488888765
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=1.6e-14 Score=135.70 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=166.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
+|-+.|+|+.|.+.|.++++|+++.+ +||..++..++....++.-.+..+.-+.+-+...++ +.|..|++|-+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa-----S~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA-----SNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc-----ccCceEEEEecC
Confidence 46678999999999999999999985 999999998888776666566666555554444444 368999999999
Q ss_pred CCCEEEEEE-cCCceeEEEEcCCeEEEEECCeEEEEECCCC--------------eeeeeecCCC-----------CC--
Q 019672 84 TGTALRELN-FLTSILAVRLNKKRLVIVLREKTYIYDANTL--------------AILDTIDTVP-----------NL-- 135 (337)
Q Consensus 84 ~~~~~~~~~-~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~--------------~~~~~~~~~~-----------~~-- 135 (337)
.+.++.-+. |.+.|++|+|+|.. ....||++++||.+-. .+...+.... ..
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 999887654 55699999999876 2222899999998711 0000000000 00
Q ss_pred -----------ceEEEEeeCCCc-cEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEE-EEEeCCCc
Q 019672 136 -----------KGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYI-ATASEQGT 197 (337)
Q Consensus 136 -----------~~~~~~~~~~~~-~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~l-at~s~dg~ 197 (337)
..+.-...+.+. .+.+++- .+..+.+|++.++...|- .++..+.++|-...+ .+++.||.
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 000000011111 1112221 356778899999877654 789999999965554 47889998
Q ss_pred EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
.| |||+-.|..++....+ ...+..-+||+||+ .++....-|.+.|+.....+..+
T Consensus 420 t~-iwdi~eg~pik~y~~g--h~kl~d~kFSqdgt---s~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 420 TI-IWDIWEGIPIKHYFIG--HGKLVDGKFSQDGT---SIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred eE-eeecccCCcceeeecc--cceeeccccCCCCc---eEecCCCCCceEEeccCCCcccc
Confidence 64 9999999888777655 34566779999999 88888888999999876554433
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-12 Score=119.42 Aligned_cols=238 Identities=15% Similarity=0.179 Sum_probs=157.7
Q ss_pred EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe----EEEEECCeEEE
Q 019672 42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR----LVIVLREKTYI 117 (337)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~----~~v~~d~~i~i 117 (337)
+..+.+-+..+...+++.++ ++|+ .||+|+||.+.+|+++.++.+.+.|.+|+|+|.. ++++.++.+.|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wl--asGs-----dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWL--ASGS-----DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred EeccCCeEEEEEecCCccee--eecC-----CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 33344445555555555554 4553 6999999999999999999999999999998753 34444555555
Q ss_pred EECCCCe---------eeeeecCC--------------------------CCCceEEEEeeCCCccEEEEcCC-CCccEE
Q 019672 118 YDANTLA---------ILDTIDTV--------------------------PNLKGLCAFSPSLNACFLAVPAS-TTKGSV 161 (337)
Q Consensus 118 ~d~~~~~---------~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~-~~dg~v 161 (337)
-+-.-|. .+...... .++..+..+.++..|.||++... .....|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 5432221 11111000 01112334566777889886542 124678
Q ss_pred EEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccE
Q 019672 162 LVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 236 (337)
Q Consensus 162 ~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~ 236 (337)
.|.++...+.. ..+.|.++.|+|.-.+|+.++... |||||+...++++++..+. -.|.+++.+|.|. -
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg~--kwiS~msihp~GD---n 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTGS--KWISSMSIHPNGD---N 621 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcCC--eeeeeeeecCCCC---e
Confidence 89998765543 238899999999999999998863 6999999888777775442 3589999999998 8
Q ss_pred EEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672 237 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 313 (337)
Q Consensus 237 las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~ 313 (337)
|+.|+.|+.+-.||++-...+-+.. . .-.+ .+ ..++++..-+.+++++.||++.+|-
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~l---r----~H~~---av----------r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTL---R----LHEK---AV----------RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHh---h----hhhh---hh----------hhhhhccccceeeeecCCCcEEEEe
Confidence 9999999999999998665432100 0 0000 11 1223344446677888889999874
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.54 E-value=2.8e-12 Score=107.58 Aligned_cols=233 Identities=13% Similarity=0.144 Sum_probs=155.9
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEcCC--------ceEEEeCCCC---------cEEEEE---eeCCEEEEEEccCCCEEEE
Q 019672 5 SSSYPVFFVSFNQDNS-GFALSTKD--------GFKIFDSSTG---------RLCYER---AVGAFSIVEMLYSSSLLAI 63 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~-~la~g~~~--------g~~vw~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~ 63 (337)
.+.++|+.++=+|-.+ .|++..++ +..||.+... +.+... ..+.+.++.+.+++..++.
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 4567888888888654 46665441 2369976432 111112 2356778888887777765
Q ss_pred EeCCCCCCCCCceEEEEECCCCCE-EEEEEc------CCceeEEEEcC--C--eEEEEECCeEEEEECCCCeeeeeecCC
Q 019672 64 VGAGEQPSLSPRRLCLFNTTTGTA-LRELNF------LTSILAVRLNK--K--RLVIVLREKTYIYDANTLAILDTIDTV 132 (337)
Q Consensus 64 ~~~g~~~~~~d~~v~iwd~~~~~~-~~~~~~------~~~v~~i~~~~--~--~~~v~~d~~i~i~d~~~~~~~~~~~~~ 132 (337)
+ .|+.|.+|++..+.. +.++.. .....+-+|+| + .+.+..|+++..||+++++....|..
T Consensus 141 m--------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d- 211 (370)
T KOG1007|consen 141 M--------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED- 211 (370)
T ss_pred e--------ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh-
Confidence 5 378999999987765 333322 22345555655 3 34444599999999999988777753
Q ss_pred CCCceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEc
Q 019672 133 PNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~ 204 (337)
.+...+..+.++|+.+ +|+++| .||.|+|||.++.+.. |...|.++.|+|. .++|.+|+.|..+ .+|..
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V-~Lsca 288 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV-NLSCA 288 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee-EEEec
Confidence 2334566777777765 466666 6999999999876542 3478999999994 4688899999875 58865
Q ss_pred CCCc---e--------------------------eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 205 SEAT---K--------------------------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 205 ~~~~---~--------------------------~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
..-. . +.++. .|...|++++||.-..- .+|+-|.||.+-|=.+..
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPW--iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPW--IFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCe--eEEEeccCceEEeecCCh
Confidence 3211 0 11221 23456999999988773 677889999998876653
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.3e-13 Score=124.66 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=152.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC--------cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
++...|+.+.|.|-...|++++.+++ ++|+++.. +.++++..|.-.++++....+.--+.++| -|+
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg-----~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG-----IDG 366 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec-----cCc
Confidence 56677899999999999999999996 99999321 34566554444444444444433333333 599
Q ss_pred eEEEEECCCCC----------EEEEE-EcCCceeEEEEc--CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672 76 RLCLFNTTTGT----------ALREL-NFLTSILAVRLN--KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAF 141 (337)
Q Consensus 76 ~v~iwd~~~~~----------~~~~~-~~~~~v~~i~~~--~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 141 (337)
+|+.|++-.+. ....+ .|...|+.++++ +++++.+. |+++++|+...... .++........-..+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 99999654221 11222 344578888886 45666665 99999999876554 333322222222223
Q ss_pred eeCCCccEEEEcCCCCccEEEEEEccCCccc------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSH------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 209 (337)
Q Consensus 142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~ 209 (337)
.+-.-.....+++. .-+.-.++|+...... ....++-+..+|.+.+..++-+|+. ||++|..+++.
T Consensus 446 d~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 446 DRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTGKI 523 (577)
T ss_pred eeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccccccc
Confidence 32111111111111 1222223333222111 1155888999999999999999997 79999999999
Q ss_pred eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
+.... .+...++++++.|+|. +|++++.||.|++|.+...
T Consensus 524 l~s~~--a~~~svtslai~~ng~---~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMV--AHKDSVTSLAIDPNGP---YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chhee--eccceecceeecCCCc---eEEeecCCceeehhhccch
Confidence 87764 2455699999999999 9999999999999998643
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.54 E-value=1e-12 Score=111.84 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=153.3
Q ss_pred CCCCCCCeEEEEEcCCC----CEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCC--CEEEEEeCCCCCCCCCc
Q 019672 3 NQSSSYPVFFVSFNQDN----SGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg----~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~ 75 (337)
.+.+++..+-++|+-|- -++|+|+..|+ +|.|+.+++..-....++-.+-++.+.+ ..+++.+. .|.
T Consensus 85 D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------kD~ 158 (385)
T KOG1034|consen 85 DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------KDH 158 (385)
T ss_pred CCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------CCc
Confidence 44567778888997554 36888888886 9999999887655555555555554433 23444443 699
Q ss_pred eEEEEECCCCCEEEEEE----cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCC----CCCce-------
Q 019672 76 RLCLFNTTTGTALRELN----FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV----PNLKG------- 137 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~----~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~----~~~~~------- 137 (337)
+||+||+++..++.-+. |...|+++.|+.++..+++ |.++++|++...+....++.. ++...
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 99999999999998764 3458999999876544443 889999999843222111100 00000
Q ss_pred ----E---EEEeeCC------CccEEEEcCCCCccEEEEEEccCC-cccc-------------c-----CceEE--EEeC
Q 019672 138 ----L---CAFSPSL------NACFLAVPASTTKGSVLVYNVMEL-HSHC-------------E-----APLAA--IVLS 183 (337)
Q Consensus 138 ----~---~~~~~~~------~~~~la~~~~~~dg~v~i~d~~~~-~~~~-------------~-----~~i~~--~~~s 183 (337)
. ..+..++ -+.++.+-+. ++.|..|..-.. ...| + ..|.- .+|+
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~gd~ilSksc--enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWFGDFILSKSC--ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred cccccccccccccchHHHHHHHhhheeeccc--CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence 0 0011110 0234555453 678999987211 1111 0 23333 4567
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672 184 SNGMYIATASEQGTIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 251 (337)
Q Consensus 184 ~dg~~lat~s~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l 251 (337)
|-++.||.|.+.|.+ .+||++..+.. .++......+.|...+||.||. +|+...+|++|-=||-
T Consensus 317 ~~~~~la~gnq~g~v-~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs---~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 317 PWQKMLALGNQSGKV-YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS---ILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCccCceEEeccccceeeeeeecccCc---EEEEEeCCCcEEEEEe
Confidence 778999999999984 79999876652 2232222335699999999999 9999999999988874
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.53 E-value=1.7e-12 Score=112.94 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=131.9
Q ss_pred cCCceeEEEEcCC-eEEEEE---CCeEEEEECCCCee-------eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672 93 FLTSILAVRLNKK-RLVIVL---REKTYIYDANTLAI-------LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 93 ~~~~v~~i~~~~~-~~~v~~---d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
|..+|++++|+|- ..++++ |.+|.||++....+ +..+..|....+++++.+... ..|+++|+ |.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~--Dn~v 156 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS--DNTV 156 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC--CceE
Confidence 4568999999762 333343 67999999976533 344555555556666666443 35666774 8999
Q ss_pred EEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672 162 LVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 237 (337)
Q Consensus 162 ~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l 237 (337)
.+|++.++..+ |...|.++.|+.||.+|+|++.|.. |||||.++++.+.+- .+|..+.-..+.|-.+|. ++
T Consensus 157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~---i~ 231 (472)
T KOG0303|consen 157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGK---IF 231 (472)
T ss_pred EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeec-ccccCCCcceeEEeccCc---ee
Confidence 99999998754 4588999999999999999999987 799999999998876 344444445567778887 44
Q ss_pred EEEe---CCCcEEEEecCCCcccCCC---CcccccccccccccceeecccccceeeeeccCCCcccCEE-EEEEeCCcEE
Q 019672 238 VATS---SSGSLHVFSPGFAINQRRG---GRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV-SVITYNGYFV 310 (337)
Q Consensus 238 as~s---~dg~v~iw~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~~~ 310 (337)
-+|- ++..+-+||-..-.++... ..+++. .+| .|++.. +.| ++|-.||.|+
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv---l~P-----FyD~dt--------------~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV---LLP-----FYDPDT--------------SIVYLCGKGDSSIR 289 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCce---EEe-----eecCCC--------------CEEEEEecCCcceE
Confidence 4442 3467899987655443210 001110 111 233322 333 4778899999
Q ss_pred EEEEecCC
Q 019672 311 EYIFSINN 318 (337)
Q Consensus 311 ~~~~~~~~ 318 (337)
-|.+..+.
T Consensus 290 YyEit~d~ 297 (472)
T KOG0303|consen 290 YFEITNEP 297 (472)
T ss_pred EEEecCCC
Confidence 99996654
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=5e-12 Score=106.12 Aligned_cols=232 Identities=13% Similarity=0.185 Sum_probs=152.7
Q ss_pred CCCeEEEEEc--CCCC-EEEEEcC-----CceEEE--eCCCCcEEEEEee---CCEEEEEEccCC-----CEEEEEeCCC
Q 019672 7 SYPVFFVSFN--QDNS-GFALSTK-----DGFKIF--DSSTGRLCYERAV---GAFSIVEMLYSS-----SLLAIVGAGE 68 (337)
Q Consensus 7 ~~~v~~~~fs--~dg~-~la~g~~-----~g~~vw--~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~g~ 68 (337)
.-+++.+.|+ |+.+ +||.|+- +.+.|- |.++++.+...+. .++..+.+.+++ .+++.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT----- 118 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT----- 118 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-----
Confidence 4468888898 4443 4888863 234333 4455555544321 223333444443 23333
Q ss_pred CCCCCCceEEEEECCC--CCEEE--------EEEcCCceeEEEEc---CCeEEEEE-CCeEEEEECCCCee---eeeecC
Q 019672 69 QPSLSPRRLCLFNTTT--GTALR--------ELNFLTSILAVRLN---KKRLVIVL-REKTYIYDANTLAI---LDTIDT 131 (337)
Q Consensus 69 ~~~~~d~~v~iwd~~~--~~~~~--------~~~~~~~v~~i~~~---~~~~~v~~-d~~i~i~d~~~~~~---~~~~~~ 131 (337)
.+..+|+|.+.. ++... +-.+..+++++.|+ ++.+.+++ |.+..|||+.++.. ..++-.
T Consensus 119 ----s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 119 ----SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred ----ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 246899998763 22111 12345688888885 56666666 89999999988632 222333
Q ss_pred CCCCceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCccc-------c-cCceEEEEeCC-CCCEEEEEeCCCcEEEE
Q 019672 132 VPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELHSH-------C-EAPLAAIVLSS-NGMYIATASEQGTIIRV 201 (337)
Q Consensus 132 ~~~~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~~~-------~-~~~i~~~~~s~-dg~~lat~s~dg~~i~v 201 (337)
|. ..+..+++.. ...++|+.| .||.|++||++...-. . ..+...++|++ |-+++||-..|+.-|.|
T Consensus 195 HD--KEV~DIaf~~~s~~~FASvg--aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 195 HD--KEVYDIAFLKGSRDVFASVG--ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred cC--cceeEEEeccCccceEEEec--CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 33 3455555543 245788888 5999999999876421 1 26788999997 56689998888776779
Q ss_pred EEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 202 FLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 202 wd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
.|++... .+.+++. |.+.|+.++|.|... ..|+++++|..+-|||+.+..
T Consensus 271 LDiR~P~tpva~L~~--H~a~VNgIaWaPhS~--~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRN--HQASVNGIAWAPHSS--SHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred EEecCCCcceehhhc--CcccccceEecCCCC--ceeeecCCcceEEEEeccccc
Confidence 9998754 4556643 577899999999887 599999999999999997643
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.52 E-value=7.1e-12 Score=118.03 Aligned_cols=257 Identities=11% Similarity=0.074 Sum_probs=154.9
Q ss_pred eEEEeCCCC-cEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE--E-----EEEEcCCceeEE
Q 019672 30 FKIFDSSTG-RLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--L-----RELNFLTSILAV 100 (337)
Q Consensus 30 ~~vw~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~--~-----~~~~~~~~v~~i 100 (337)
+.||++... ...+... ...+.++.+.+....++++|. .+|+|.+||++.+.. . ..-.|..++.++
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGC------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeec------cCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 468887654 2222222 244555565544444433333 589999999987654 2 223455688888
Q ss_pred EEcCC-----eEEEEECCeEEEEECCCCee-eee--ecCC-------CCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672 101 RLNKK-----RLVIVLREKTYIYDANTLAI-LDT--IDTV-------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (337)
Q Consensus 101 ~~~~~-----~~~v~~d~~i~i~d~~~~~~-~~~--~~~~-------~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d 165 (337)
.|..+ .+.+++||.|..|+++.... ... .... ....+..++.+.+........|. ++|.|.--.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-e~G~v~~~~ 376 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-EEGKVYKGC 376 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-CCcEEEEEe
Confidence 87421 33344499999999865422 111 1111 12234555565443333333343 688887733
Q ss_pred ---ccCCc----------ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCcceeEEEEEeecCC
Q 019672 166 ---VMELH----------SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 166 ---~~~~~----------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg 231 (337)
.+... ..|.++|.++.++|=+..+...+.|.+ +|||... ....+..+.. +...|++++|||-.
T Consensus 377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTR 453 (555)
T ss_pred ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEcCcC
Confidence 22222 112399999999998776666666877 6999987 5555555543 24459999999988
Q ss_pred CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672 232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 311 (337)
Q Consensus 232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~ 311 (337)
. ..++++..||.|.||||......+...+.-. ...++ ...|+. .+..|++|...|.+++
T Consensus 454 p--avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~---~~~~s~--------------~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 454 P--AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALT---RVRWSP--------------NGKLLAVGDANGTTHI 512 (555)
T ss_pred c--eEEEEEcCCCceehhhhhccccCCccccccc--ccccc---eeecCC--------------CCcEEEEecCCCcEEE
Confidence 7 4899999999999999976544332111000 11111 123333 2378999999999999
Q ss_pred EEEecC
Q 019672 312 YIFSIN 317 (337)
Q Consensus 312 ~~~~~~ 317 (337)
|.+...
T Consensus 513 ~~l~~~ 518 (555)
T KOG1587|consen 513 LKLSES 518 (555)
T ss_pred EEcCch
Confidence 999543
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=5.2e-11 Score=109.11 Aligned_cols=232 Identities=20% Similarity=0.273 Sum_probs=159.9
Q ss_pred CeEEEEE-cCCCC-EEEEEcC-Cc-eEEEeCCC-CcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 9 PVFFVSF-NQDNS-GFALSTK-DG-FKIFDSST-GRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 9 ~v~~~~f-s~dg~-~la~g~~-~g-~~vw~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.+..+.+ ++++. .++..+. ++ +.+|+... ......... ..+..+.+.++...++..+. .|+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~ 184 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------LDGTIKLWD 184 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------CCCceEEEE
Confidence 5667777 88888 4444333 54 69999987 555444433 33444555555553333221 389999999
Q ss_pred CCCCCEEEEEEc-CCceeEEEEcCCe--EEEE-E-CCeEEEEECCCCeeee-eecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 82 TTTGTALRELNF-LTSILAVRLNKKR--LVIV-L-REKTYIYDANTLAILD-TIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 82 ~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~-~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
..+++.+..+.. ...|.++.++++. +++. . |+.|++||...+..+. .+..+.... +. .+.+++..+++++
T Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~- 260 (466)
T COG2319 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSPDGSLLASGS- 260 (466)
T ss_pred cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE--eECCCCCEEEEec-
Confidence 998888877765 5589999998765 3333 2 7899999998777766 455544433 33 3445556667666
Q ss_pred CCccEEEEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672 156 TTKGSVLVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~ 229 (337)
.++.+++||+..... .|...|.++.|+|++..+++++.|+. +++||..+...........+...+..+.|++
T Consensus 261 -~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
T COG2319 261 -SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338 (466)
T ss_pred -CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence 599999999986653 34588999999999999999999976 7999998887666554112233688888844
Q ss_pred CCCcccEEEEE-eCCCcEEEEecCCCc
Q 019672 230 SMQFQDILVAT-SSSGSLHVFSPGFAI 255 (337)
Q Consensus 230 dg~~~~~las~-s~dg~v~iw~l~~~~ 255 (337)
++. .++.+ ..|+.+++|++....
T Consensus 339 ~~~---~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 339 DGS---LLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCC---EEEEeecCCCcEEeeecCCCc
Confidence 424 55555 788999999987765
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.51 E-value=2.5e-12 Score=121.12 Aligned_cols=233 Identities=11% Similarity=0.096 Sum_probs=146.0
Q ss_pred CCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCcE--EEE----EeeCCEEEEEEccC---CCEEEEEeCCCCCCCCC
Q 019672 6 SSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRL--CYE----RAVGAFSIVEMLYS---SSLLAIVGAGEQPSLSP 74 (337)
Q Consensus 6 ~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~~--~~~----~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~d 74 (337)
...+|+|+.|+|.. .++++|+.+| +-+||+..+.. ... ...|...++.+.+. .+.- +.++ +.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~-f~s~-----ssD 314 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE-FFSL-----SSD 314 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc-eEEE-----ecC
Confidence 56789999999866 5677888888 69999887654 211 11233333333322 2211 2222 259
Q ss_pred ceEEEEECCCCCEEE-----E-E-------EcCCceeEEEE---cCCeEEEEE-CCeEEEEECCCCee--------eeee
Q 019672 75 RRLCLFNTTTGTALR-----E-L-------NFLTSILAVRL---NKKRLVIVL-REKTYIYDANTLAI--------LDTI 129 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~-----~-~-------~~~~~v~~i~~---~~~~~~v~~-d~~i~i~d~~~~~~--------~~~~ 129 (337)
|+|..|+++.-.... . . .-...++.++| +++.+++++ .|.|.-=+-...+. +..+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 999999876432210 0 1 11225677777 467888888 66766523222211 1122
Q ss_pred cCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc-CCccc-----ccCceEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 019672 130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELHSH-----CEAPLAAIVLSSNG-MYIATASEQGTIIRVF 202 (337)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~-~~~~~-----~~~~i~~~~~s~dg-~~lat~s~dg~~i~vw 202 (337)
..+ ...+.++..+|-...++.++. |-+|+||... ....+ +...|++++|||-- ..+|++..||. |.||
T Consensus 395 ~~h--~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iW 469 (555)
T KOG1587|consen 395 ITH--IGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIW 469 (555)
T ss_pred ccc--CcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehh
Confidence 333 345667777665555444442 8899999876 33322 12669999999964 47888888998 6999
Q ss_pred EcCCCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 203 LVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 203 d~~~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
|+..... +.+... .....+.+.|+++|+ +|++|...|++++|++...
T Consensus 470 DLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~---~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKV--CSPALTRVRWSPNGK---LLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhccccCCcccccc--cccccceeecCCCCc---EEEEecCCCcEEEEEcCch
Confidence 9965433 222222 234467888999999 9999999999999999754
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=6.9e-12 Score=102.86 Aligned_cols=221 Identities=10% Similarity=0.143 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCEEEEEcCCc-eEEEeCCC---------Cc-EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 10 VFFVSFNQDNSGFALSTKDG-FKIFDSST---------GR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
|..-+++|-+++|++|...| +.++.+.+ ++ .+...+.++..+-.+.|....+ ++++ |+.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~g-------dG~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGG-------DGLVY 84 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhe-eecc-------CceEE
Confidence 55568899999999999887 46665432 22 2333333443444444444443 3333 78999
Q ss_pred EEECCCCCE------EEEEE--c-----C-CceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672 79 LFNTTTGTA------LRELN--F-----L-TSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAF 141 (337)
Q Consensus 79 iwd~~~~~~------~~~~~--~-----~-~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 141 (337)
=|....-.. +.+.. . + .+|.++.+.| +.++.+. |+.++-||+++++..++++.|.+ .+-++
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD--YvH~v 162 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD--YVHSV 162 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc--eeeee
Confidence 998653221 11111 1 1 1577777764 4455554 88999999999999999987755 34343
Q ss_pred eeCCCccEEEEcCCCCccEEEEEEccCCccccc---------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
..-..+..+.+++ +||++++||+++++.+.. ..|.+++.+.| +|++|+.-. +-+|+++.
T Consensus 163 v~R~~~~qilsG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGgGp~--lslwhLrs 236 (325)
T KOG0649|consen 163 VGRNANGQILSGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGGGPK--LSLWHLRS 236 (325)
T ss_pred eecccCcceeecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEecCCCc--eeEEeccC
Confidence 3312233566666 799999999999876432 44777777654 899887653 57999999
Q ss_pred CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 207 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
.+....|.. ++++..+.|-.| .+++++.-+.|.-|.+...
T Consensus 237 se~t~vfpi---pa~v~~v~F~~d-----~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 237 SESTCVFPI---PARVHLVDFVDD-----CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred CCceEEEec---ccceeEeeeecc-----eEEEeccccceeeeeeccE
Confidence 998888753 567888899765 5777787788999987643
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.51 E-value=2e-12 Score=112.82 Aligned_cols=140 Identities=17% Similarity=0.229 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEcCC-ceEEEeCCCC-------cEEEE--E--eeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672 7 SYPVFFVSFNQDNS-GFALSTKD-GFKIFDSSTG-------RLCYE--R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 7 ~~~v~~~~fs~dg~-~la~g~~~-g~~vw~~~~~-------~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (337)
..||+++.|.+... .||+|+.| .+++|-++.. +..+. + +.+.+.++.+.++++.++..+ .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D 85 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------D 85 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------C
Confidence 57899999998776 78877655 5899965432 22222 2 224455556555555655443 4
Q ss_pred CceEEEEECC--------C-----C-CEE--EEE-EcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCC
Q 019672 74 PRRLCLFNTT--------T-----G-TAL--REL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVP 133 (337)
Q Consensus 74 d~~v~iwd~~--------~-----~-~~~--~~~-~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~ 133 (337)
++.|.+|-.. + . ..+ +.. .+...|..++|+++..++.. |+.+++||+..++.+..+..+.
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence 7999999765 2 1 011 111 24468999999887766544 9999999999999888887665
Q ss_pred CCceEEEEeeCCCccEEEEcCC
Q 019672 134 NLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~la~~~~ 155 (337)
+ .+..++++|-++++++-+.
T Consensus 166 ~--yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 166 H--YVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred c--ccceeecchhhhhhhhhcc
Confidence 5 3445556666777776653
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.50 E-value=6.7e-13 Score=121.71 Aligned_cols=153 Identities=17% Similarity=0.197 Sum_probs=114.2
Q ss_pred eeEEEEcCCeEEEEE---CCeEEEEECCCCeee--eeecCCCCCceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCc
Q 019672 97 ILAVRLNKKRLVIVL---REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELH 170 (337)
Q Consensus 97 v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~ 170 (337)
...+..+..+.+|-. .|.|-||+++....+ ..+.+..|...+..+.++| |...||+++ +||.|++|.+..+.
T Consensus 584 snGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 584 SNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANG 661 (1012)
T ss_pred cCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc--cCceEEEEEeccCC
Confidence 344444555555543 679999999754322 1233444566777888776 456788887 69999999987543
Q ss_pred c------------cccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672 171 S------------HCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 237 (337)
Q Consensus 171 ~------------~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l 237 (337)
. .|...|.++.|+| -...||+++.|-+ |++||+++++....|. + |...|..++|||||+ .+
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~-g-HtdqIf~~AWSpdGr---~~ 735 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLV-G-HTDQIFGIAWSPDGR---RI 735 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheec-c-CcCceeEEEECCCCc---ce
Confidence 2 1337899999999 3558999999987 7999999998877774 3 466799999999999 99
Q ss_pred EEEeCCCcEEEEecCCCccc
Q 019672 238 VATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 238 as~s~dg~v~iw~l~~~~~~ 257 (337)
|+-+.||+|+||+-.....+
T Consensus 736 AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred eeeecCceEEEeCCCCCCCc
Confidence 99999999999997765443
No 190
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.50 E-value=6.1e-12 Score=107.07 Aligned_cols=229 Identities=10% Similarity=0.015 Sum_probs=151.0
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC--------------CEEEEEEcCCceeEEEEc-------CCe-EEE
Q 019672 52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--------------TALRELNFLTSILAVRLN-------KKR-LVI 109 (337)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~--------------~~~~~~~~~~~v~~i~~~-------~~~-~~v 109 (337)
+.+++++..+...+ .|+.+.+|++-.. .+...+.....|..-.|- |.. ++.
T Consensus 55 ckWSPDGSciL~~s-------edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 55 CKWSPDGSCILSLS-------EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred ceeCCCCceEEeec-------ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 45566666654443 5999999996421 111223333455554442 222 222
Q ss_pred EE--CCeEEEEECCCCeeeeeecCCCC---CceEEEEeeCCCccEEEEcCCCCccEEEEEEc-cCCcc------------
Q 019672 110 VL--REKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNV-MELHS------------ 171 (337)
Q Consensus 110 ~~--d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~-~~~~~------------ 171 (337)
++ +.-|++||.-+++....+....+ ..+..++.++||+.+|+++- ...|++||+ +.++.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy---krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY---KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc---cceEEEeeccCCCCCCcchhhhhcccc
Confidence 33 77899999999988777654433 23446778889999987654 689999999 33331
Q ss_pred cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEE
Q 019672 172 HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVF 249 (337)
Q Consensus 172 ~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw 249 (337)
.+.+-|.|++|+|- .+.+|.|+.-.+ +-|+.-..+..++.+. .+..-|+.|.|.+||+ .|.+|+. |-.|-.|
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl~llg--gh~gGvThL~~~edGn---~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGN---KLFSGARKDDKILCW 278 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccce-eeeEecCCCCceeeec--ccCCCeeeEEeccCcC---eecccccCCCeEEEE
Confidence 11277999999994 458888887655 5788877778877663 3456799999999999 8888876 4579999
Q ss_pred ecCCCcccCCCCcccccccccccccceeecccccce---eeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 250 SPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH---VLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
|++.-..+. |...++. .-+..+...++++.|++|+.||.|++|+++.
T Consensus 279 DiR~~~~pv--------------------~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 279 DIRYSRDPV--------------------YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eehhccchh--------------------hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 998655432 1111100 0011122245668899999999999999864
No 191
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.49 E-value=5.9e-12 Score=107.39 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=121.8
Q ss_pred EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672 12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (337)
Q Consensus 12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~ 90 (337)
-++|+|+|+++|+..+..+-|-|.++.++..-.. ...+..+++.-++..++.+. +.|..|.+|++.+.+--+.
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~------yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVA------YKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeee------eccceEEEEEeecceeEEE
Confidence 5689999999999998888888988876432111 12344556655555554443 3688999999999888888
Q ss_pred EEcCC-ceeEEEEcCCeEEE--EE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC---------
Q 019672 91 LNFLT-SILAVRLNKKRLVI--VL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST--------- 156 (337)
Q Consensus 91 ~~~~~-~v~~i~~~~~~~~v--~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------- 156 (337)
+.... .+.++.|+|++.-+ .+ +-+|.+|.+.+.+.... .-+. .++-.+++++++++.|...+.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc--cCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 87554 78899999987322 22 67999999987654322 2111 233455667777777665421
Q ss_pred -------------------------CccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672 157 -------------------------TKGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 157 -------------------------~dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~ 204 (337)
.+..+.+||.--.-. ...-.+..++|+|.+++||.|+.|+. +||.+-
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh 239 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNH 239 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhce
Confidence 234455665321111 01156889999999999999999986 577543
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.5e-11 Score=99.60 Aligned_cols=224 Identities=13% Similarity=0.177 Sum_probs=148.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCC------cEEEEE----e-----eCCEEEEEEccCCCEEEEEeCC
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG------RLCYER----A-----VGAFSIVEMLYSSSLLAIVGAG 67 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~------~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~g 67 (337)
.++|++||++++|.. .+|.+|++.-++=|..... +.+.+. + ..++....+.+..+-+++.+|
T Consensus 58 eqahdgpiy~~~f~d--~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG- 134 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFHD--DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG- 134 (325)
T ss_pred ccccCCCeeeeeeeh--hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-
Confidence 478999999999993 4577777755665532211 111111 1 123333445566677777775
Q ss_pred CCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEE-cCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCC--------
Q 019672 68 EQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNL-------- 135 (337)
Q Consensus 68 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~-~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~-------- 135 (337)
|+.+..||+++|+..+++..++ .|.++.. +.+..++.+ ||++++||.++.+.+..+....++
T Consensus 135 ------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 135 ------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred ------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 9999999999999999998776 5777665 444444433 999999999999988888654433
Q ss_pred ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY 211 (337)
Q Consensus 136 ~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~ 211 (337)
.-+.|++.+. .++++++ ...+.+|.+++....+. +++..+.|..| .++.+++- +.+.-|.+. |..-.
T Consensus 209 ~wigala~~e--dWlvCGg---Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g-~~v~~~~l~-Gvl~a 279 (325)
T KOG0649|consen 209 KWIGALAVNE--DWLVCGG---GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEG-NHVQSYTLN-GVLQA 279 (325)
T ss_pred ceeEEEeccC--ceEEecC---CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccc-cceeeeeec-cEEEE
Confidence 2345666554 4888877 46799999998877654 77888888765 56666654 446778763 44433
Q ss_pred eeccCCcceeEEEEEee--cCCCcccEEEEEeCCCcEEEEe
Q 019672 212 SFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 212 ~~~~~~~~~~i~~l~fs--~dg~~~~~las~s~dg~v~iw~ 250 (337)
....+++ ..++..++ | -+ +|-.++..+.++|+.
T Consensus 280 ~ip~~s~--~c~s~s~~~~p-~k---~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 280 NIPVEST--ACYSASWQTSP-IK---FISIAGFSNKLHILK 314 (325)
T ss_pred eccCCcc--ceeeecccCCc-eE---EEEecccceeeeeee
Confidence 3332222 24455544 4 23 788888888899874
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.48 E-value=3.9e-12 Score=106.66 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=150.3
Q ss_pred CCceEEEEECCCC--CEEEE-E-EcCCceeEEEEcCC---eEEEEE----C----CeEEEEECCCCe---------eeee
Q 019672 73 SPRRLCLFNTTTG--TALRE-L-NFLTSILAVRLNKK---RLVIVL----R----EKTYIYDANTLA---------ILDT 128 (337)
Q Consensus 73 ~d~~v~iwd~~~~--~~~~~-~-~~~~~v~~i~~~~~---~~~v~~----d----~~i~i~d~~~~~---------~~~~ 128 (337)
.|+.|.+.++..+ ....+ + .+.++|..++-+|. -+..+. + ..+.||.+.... .+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4788888776543 32222 2 23457888877653 222232 1 257899986431 1222
Q ss_pred ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----------ccCceEEEEeCC--CCCEEEEEeCC
Q 019672 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----------CEAPLAAIVLSS--NGMYIATASEQ 195 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----------~~~~i~~~~~s~--dg~~lat~s~d 195 (337)
+.+. ....+.++-+.|++..+|+-. |..|.+|++...... ++...++-+||| ||+.+++.+ |
T Consensus 118 Ldte-avg~i~cvew~Pns~klasm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d 192 (370)
T KOG1007|consen 118 LDTE-AVGKINCVEWEPNSDKLASMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D 192 (370)
T ss_pred CCHH-HhCceeeEEEcCCCCeeEEec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-C
Confidence 2221 123466777778777887654 789999999876542 125577888998 899998876 4
Q ss_pred CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccc
Q 019672 196 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV 275 (337)
Q Consensus 196 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (337)
++ ++.||+++..+...++.. |...|..|.|+|+-++ +|+++++||.|||||.+..+.+. ..++...
T Consensus 193 ~t-l~~~D~RT~~~~~sI~dA-Hgq~vrdlDfNpnkq~--~lvt~gDdgyvriWD~R~tk~pv----------~el~~Hs 258 (370)
T KOG1007|consen 193 ST-LQFWDLRTMKKNNSIEDA-HGQRVRDLDFNPNKQH--ILVTCGDDGYVRIWDTRKTKFPV----------QELPGHS 258 (370)
T ss_pred Cc-EEEEEccchhhhcchhhh-hcceeeeccCCCCceE--EEEEcCCCccEEEEeccCCCccc----------cccCCCc
Confidence 56 699999999988888654 4567999999999985 89999999999999998776544 3567777
Q ss_pred eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 276 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 276 ~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
..+|.+.+.+. -...|++|++|-.|..+....
T Consensus 259 HWvW~VRfn~~---------hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 259 HWVWAVRFNPE---------HDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred eEEEEEEecCc---------cceEEEecCCCceeEEEeccc
Confidence 78898866321 135677999999998887643
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.8e-12 Score=119.22 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=133.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC----ceEEEeCCCCcE--EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCce--
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKD----GFKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR-- 76 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~----g~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~-- 76 (337)
.+...+.+.+|+|||+.|+..+.+ .+.+||+.+++. +.... +......+.++++.+++++. .++.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~------~~g~~~ 273 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASS------KDGVLN 273 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEe------cCCcEE
Confidence 456679999999999998876532 268999988753 22222 22334567777888877654 2454
Q ss_pred EEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 77 LCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 77 v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
|.+||+.+++..........+....|++++ ++++. ++...||++... .....+ .+. + ....++|++..++
T Consensus 274 Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~---~-~~~~~SpDG~~ia 348 (429)
T PRK01742 274 IYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR---G-YSAQISADGKTLV 348 (429)
T ss_pred EEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC---C-CCccCCCCCCEEE
Confidence 455577776654333334456778888875 44444 466777765322 112222 221 1 2345678888988
Q ss_pred EcCCCCccEEEEEEccCCcccc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEc--CCCceeEeeccCCcceeEEEEE
Q 019672 152 VPASTTKGSVLVYNVMELHSHC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLV--SEATKSYSFRRGTYPSTIFSLS 226 (337)
Q Consensus 152 ~~~~~~dg~v~i~d~~~~~~~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~--~~~~~~~~~~~~~~~~~i~~l~ 226 (337)
+.+. ++ +.+||+.++.... ......++|+|||++|+.++.+|. +++|++ .+|+.+.++.. +.+.+...+
T Consensus 349 ~~~~--~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~~~~p~ 422 (429)
T PRK01742 349 MING--DN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQVKFPA 422 (429)
T ss_pred EEcC--CC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCCCCCcc
Confidence 8763 44 6669998775321 123466789999999999999987 477775 36777777742 345577889
Q ss_pred eecC
Q 019672 227 FGQS 230 (337)
Q Consensus 227 fs~d 230 (337)
|||-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 9974
No 195
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.8e-11 Score=110.14 Aligned_cols=269 Identities=14% Similarity=0.137 Sum_probs=169.5
Q ss_pred CCCeEEEEEcCCCCE-EEEEcCC-ceEEEeCCCCcEEEEEeeC-CEEEEEEc-cCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 7 SYPVFFVSFNQDNSG-FALSTKD-GFKIFDSSTGRLCYERAVG-AFSIVEML-YSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~-la~g~~~-g~~vw~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+..-+.+..+|||+| +|+|.-+ .+++||+.+..+.++.+.. .+.-+.++ -+-+..++.- .|++|-+-.-
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-------~DR~IefHak 123 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-------NDRTIEFHAK 123 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-------cCceeeehhh
Confidence 344577899999999 5666655 4799999888777765432 22212222 1222223332 3666655321
Q ss_pred CCCCEEEEEEcCCceeEEEEc---CCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 83 TTGTALRELNFLTSILAVRLN---KKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~---~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
-|. -..+..+..-.++.++ -+.+++++...|+-+++..|+-+..+.+... ++.++..++...+||+++ .+|
T Consensus 124 -~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt--~~g 197 (703)
T KOG2321|consen 124 -YGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGT--EDG 197 (703)
T ss_pred -cCe-eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEecc--cCc
Confidence 111 1222333333445543 3455555677999999999988888876544 455556667777888877 699
Q ss_pred EEEEEEccCCccccc----------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672 160 SVLVYNVMELHSHCE----------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 223 (337)
Q Consensus 160 ~v~i~d~~~~~~~~~----------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 223 (337)
.|..||.+....... ..|+++.|+.||-.++.|..+|.+ .|||+++.+.+..-. +....+|.
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v-~iyDLRa~~pl~~kd-h~~e~pi~ 275 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV-LIYDLRASKPLLVKD-HGYELPIK 275 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE-EEEEcccCCceeecc-cCCcccee
Confidence 999999886543211 449999999999999999999985 799999988765432 33355799
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEE
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI 303 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~ 303 (337)
.+.|-+.++ .+.+++ .+...++|||-.+++.... .-|.. .+=.. +. -++...++++
T Consensus 276 ~l~~~~~~~-q~~v~S-~Dk~~~kiWd~~~Gk~~as----------iEpt~--~lND~-------C~---~p~sGm~f~A 331 (703)
T KOG2321|consen 276 KLDWQDTDQ-QNKVVS-MDKRILKIWDECTGKPMAS----------IEPTS--DLNDF-------CF---VPGSGMFFTA 331 (703)
T ss_pred eecccccCC-CceEEe-cchHHhhhcccccCCceee----------ccccC--CcCce-------ee---ecCCceEEEe
Confidence 999976633 124443 4456799999877765332 11110 01001 01 1233678888
Q ss_pred EeCCcEEEEEE
Q 019672 304 TYNGYFVEYIF 314 (337)
Q Consensus 304 ~~dg~~~~~~~ 314 (337)
-.++.+..|-+
T Consensus 332 ne~~~m~~yyi 342 (703)
T KOG2321|consen 332 NESSKMHTYYI 342 (703)
T ss_pred cCCCcceeEEc
Confidence 88888888755
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=3.5e-13 Score=119.42 Aligned_cols=173 Identities=11% Similarity=0.124 Sum_probs=142.0
Q ss_pred CCceEEEEECCCCCEEEEEEcCCceeEEEE--cCCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSILAVRL--NKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~--~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (337)
..|.|..+|+.++++.+++...+.|.++.| +++.++|+..+.++|||- .|..++.+..+.. +..+.+-|-..+|
T Consensus 149 rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~---v~rLeFLPyHfLL 224 (545)
T KOG1272|consen 149 RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIR---VARLEFLPYHFLL 224 (545)
T ss_pred CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCc---hhhhcccchhhee
Confidence 478999999999999999999999999988 456677777899999994 5667788765433 4444555555567
Q ss_pred EEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672 151 AVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 225 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l 225 (337)
++++ ..|.++--|+.+++.+.. +++..++-+|-...+-+|...|+ +-+|.-...+.+..+- -|.++|.+|
T Consensus 225 ~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~skePLvKiL--cH~g~V~si 299 (545)
T KOG1272|consen 225 VAAS--EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSKEPLVKIL--CHRGPVSSI 299 (545)
T ss_pred eecc--cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCcchHHHHH--hcCCCcceE
Confidence 7666 589999999999987643 88999999998889999999998 5899998888776553 246789999
Q ss_pred EeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672 226 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 226 ~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~ 257 (337)
++.++|+ |+||++.|..++|||++....+
T Consensus 300 Av~~~G~---YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 300 AVDRGGR---YMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred EECCCCc---EEeecccccceeEeeecccccc
Confidence 9999999 9999999999999999876643
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=111.82 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCceEEEEECCCCCEEEEEE-----cCCceeEEEEcC--Ce-EEEEE-CCeEEEEECCC--------------Ceeeeee
Q 019672 73 SPRRLCLFNTTTGTALRELN-----FLTSILAVRLNK--KR-LVIVL-REKTYIYDANT--------------LAILDTI 129 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~-----~~~~v~~i~~~~--~~-~~v~~-d~~i~i~d~~~--------------~~~~~~~ 129 (337)
.-+.|.+.|....+..+.+. -.+.|++|+|-+ +. ++++. ++.+++||... +......
T Consensus 193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 35678888766532211121 135789998843 33 44443 88999997631 1110000
Q ss_pred ----cCCCCC--------ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEE
Q 019672 130 ----DTVPNL--------KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATA 192 (337)
Q Consensus 130 ----~~~~~~--------~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~ 192 (337)
....+| ..+..++++||+.+||+.+ .||.++|||..+.+.+.. +...||+|||||++||+|
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCceEEEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence 000011 2345667788999999999 699999999988776532 889999999999999999
Q ss_pred eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 193 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 193 s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
++|. ++.||.+..++.+.+= ..|+.-|..|+|.
T Consensus 351 GEDD-LVtVwSf~erRVVARG--qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 351 GEDD-LVTVWSFEERRVVARG--QGHKSWVSVVAFD 383 (636)
T ss_pred CCcc-eEEEEEeccceEEEec--cccccceeeEeec
Confidence 9997 5799999998877642 2346678888887
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.43 E-value=9.2e-12 Score=114.97 Aligned_cols=230 Identities=15% Similarity=0.159 Sum_probs=152.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCC--CEEEEEeCCCCCCCCCceEEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~v~i 79 (337)
..+|+..|+|++|+.||+.||+|+.|. +.+|+..- +-+.... |+-.+-+|.|++ ..++.++- +..-+
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~~h~LasCsL--------sdFgl 118 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYS-HNDAIQCMSFNPITHQLASCSL--------SDFGL 118 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeec-cCCeeeEeecCchHHHhhhcch--------hhccc
Confidence 457899999999999999999998876 59998542 2222222 223344555555 44555443 46778
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCCc-----cEE
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNA-----CFL 150 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~l 150 (337)
|...... +........+.+.+|+.++.+.+. +|+|.+-+-. ++....++.+ .....+.+++++|.. ..+
T Consensus 119 WS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 119 WSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred cChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 8876533 333444567888899877655543 8999998653 3333344332 222345555554432 244
Q ss_pred EEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672 151 AVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS 226 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~ 226 (337)
++.. ...++..|.+........ -...|+.+-|+|.++..|+.|+. +++|- +.|-.+.++.. ...-|++++
T Consensus 197 aV~D--W~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WIWtV~ 270 (1081)
T KOG1538|consen 197 AVAD--WGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIWTVQ 270 (1081)
T ss_pred EEEe--ccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeEEEEE
Confidence 5544 456666666543222211 45678999999999999999996 57774 56777777632 345699999
Q ss_pred eecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 227 FGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 227 fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
..|+++ +++.|..||||-.|++-.
T Consensus 271 ~~PNsQ---~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 271 AKPNSQ---YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EccCCc---eEEEEEccCeeehhhhHH
Confidence 999999 999999999999999753
No 199
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=2.9e-11 Score=105.42 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=145.0
Q ss_pred CCCCCCCeEEEEEcCCCCE-EEEEcCCc-eEEEeCCCCcE-------EEEE--eeCCEEEEEEccCCCEEEEEeCCCCCC
Q 019672 3 NQSSSYPVFFVSFNQDNSG-FALSTKDG-FKIFDSSTGRL-------CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPS 71 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~-la~g~~~g-~~vw~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~ 71 (337)
..+|.++|..++|+|-... +|+|++|. ++||.+-.+-+ +..+ +...++++.+.+...-+.+.++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag----- 151 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG----- 151 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc-----
Confidence 3579999999999997765 78888887 59998644322 2222 2234566666544433333343
Q ss_pred CCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
.|++|.+||+.+|+.+.++.|+..|.++.|+.++-.+++ |.+|+|||.++++.+.+-..|.+....-++= -.++.
T Consensus 152 -~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif-l~~g~ 229 (472)
T KOG0303|consen 152 -SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF-LASGK 229 (472)
T ss_pred -CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE-eccCc
Confidence 499999999999999999998889999999988766555 8999999999998887764444332222221 12333
Q ss_pred EEEEcCC--CCccEEEEEEccCCccc---cc----CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCce-eEeeccCC
Q 019672 149 FLAVPAS--TTKGSVLVYNVMELHSH---CE----APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATK-SYSFRRGT 217 (337)
Q Consensus 149 ~la~~~~--~~dg~v~i~d~~~~~~~---~~----~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~-~~~~~~~~ 217 (337)
+++.|. ..+.++.+||..+.... ++ +.|.-=-|+||.+.+..++ .|+. ||-|.+.+... ++-+..-.
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecccc
Confidence 555542 14788999998766532 11 5555556788877665444 6776 79999877653 22221111
Q ss_pred cceeEEEEEeecCC
Q 019672 218 YPSTIFSLSFGQSM 231 (337)
Q Consensus 218 ~~~~i~~l~fs~dg 231 (337)
...+...+.|-|..
T Consensus 308 S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 308 SKEPQRGMGFMPKR 321 (472)
T ss_pred cCCccccccccccc
Confidence 22345667777754
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3e-11 Score=113.17 Aligned_cols=206 Identities=13% Similarity=0.038 Sum_probs=131.8
Q ss_pred ceEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-
Q 019672 29 GFKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR- 106 (337)
Q Consensus 29 g~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~- 106 (337)
.+.+||.+...... ......+....+.++++.+++++.+ ..+..|.+||+.+++.............+.|+|++
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~----~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFE----NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEec----CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 36888987654322 2222345556778888888887752 12458999999988654333344445567888865
Q ss_pred -EEEEE--CCe--EEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc--c--cccCce
Q 019672 107 -LVIVL--REK--TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--S--HCEAPL 177 (337)
Q Consensus 107 -~~v~~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~--~--~~~~~i 177 (337)
++++. ++. |++||+.+++. ..+..+. .......++|++..+++.+. .+|..+||++.... . .....
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~--~~~~~~~wSpDG~~i~f~s~-~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGA--GNNTEPSWSPDGQSILFTSD-RSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCC--CCcCCEEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEEecCCC-
Confidence 44443 554 55667766543 3333222 23445667788887776653 46778888764321 1 11111
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 178 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 178 ~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.+.+|+|||++|+.++.++ + .+||+.+++... +.... ...+++|+|||+ +|+.++.++.+++|.+-
T Consensus 336 ~~~~~SpDG~~ia~~~~~~-i-~~~Dl~~g~~~~-lt~~~---~~~~~~~sPdG~---~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN-V-VKQDLTSGSTEV-LSSTF---LDESPSISPNGI---MIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCccCCCCCCEEEEEcCCC-E-EEEECCCCCeEE-ecCCC---CCCCceECCCCC---EEEEEEcCCCceEEEEE
Confidence 4678999999999988876 3 469999887543 22221 234678999999 99999999999888863
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=8.6e-12 Score=103.72 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=82.4
Q ss_pred EEEEeeCCCccEEEEc-CCCCccEEEEEEccCCccc---ccCceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCcee
Q 019672 138 LCAFSPSLNACFLAVP-ASTTKGSVLVYNVMELHSH---CEAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKS 210 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~-~~~~dg~v~i~d~~~~~~~---~~~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~ 210 (337)
+.+++++|++..+|+. |. .++.|.+||++ .+.. ...+++.+.|||+|++||+|+.+ |. +.+||+++.+.+
T Consensus 62 I~~~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i 138 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKI 138 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEe
Confidence 7777888887776544 33 46799999997 3332 23789999999999999998743 54 699999999988
Q ss_pred EeeccCCcceeEEEEEeecCCCcccEEEEEeC------CCcEEEEecCC
Q 019672 211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGF 253 (337)
Q Consensus 211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~------dg~v~iw~l~~ 253 (337)
.++.. ..+..++|||||+ +|++++. |+.++||+...
T Consensus 139 ~~~~~----~~~t~~~WsPdGr---~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 139 STFEH----SDATDVEWSPDGR---YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ecccc----CcEEEEEEcCCCC---EEEEEEeccceeccccEEEEEecC
Confidence 77642 2367899999999 8888875 68899999853
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6e-12 Score=110.47 Aligned_cols=185 Identities=20% Similarity=0.278 Sum_probs=129.4
Q ss_pred EEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672 11 FFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (337)
Q Consensus 11 ~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~ 87 (337)
.+++|++||+.+++|..||. |||+......+.. .+..++..+.+.+++..++.+++ | ..+||+..+|..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-------d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-------D-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-------C-ceEEEEeccCch
Confidence 68999999999999998885 9999666554433 23466777788888888888876 5 999999999976
Q ss_pred EEEEE-cCC--ceeEEEEcCCe----EEEE-E---CCeEEEEECCCC---eeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672 88 LRELN-FLT--SILAVRLNKKR----LVIV-L---REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (337)
Q Consensus 88 ~~~~~-~~~--~v~~i~~~~~~----~~v~-~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 153 (337)
+.+.+ ... ....+.|..+. +.++ . .+.|+.||+..- ..++..+.-.....+.++..++++.++|.+
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 66554 222 33444554332 2332 2 346666665321 111111111122357888889999999998
Q ss_pred CCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 154 ASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 154 ~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
+ .||.|.|++..+.+.. |...|+.+.|+||.+++++.|.|.+ ++|..+.-
T Consensus 300 T--~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 300 T--MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred c--cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 8 4999999999887754 3488999999999999999888876 57776643
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=5.4e-11 Score=103.65 Aligned_cols=234 Identities=15% Similarity=0.136 Sum_probs=153.2
Q ss_pred CCeEEEEEcCCCCE-EEEEc--CCceEEEeCCCCcEEEEE------eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 8 YPVFFVSFNQDNSG-FALST--KDGFKIFDSSTGRLCYER------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 8 ~~v~~~~fs~dg~~-la~g~--~~g~~vw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
..|+++.|.-|++. +..+. ++.+..+..+........ ....-.+..+......++++.. +|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~-------sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVS-------SGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEec-------CCcEE
Confidence 45778888877754 33333 334566655544332221 1122233444444455555433 78999
Q ss_pred EEECCCCC----EEEEEEcCCceeEEEEcCC-eEEEEE---C--CeEEEEECCCCeeeeeecCCCC-------CceEEEE
Q 019672 79 LFNTTTGT----ALRELNFLTSILAVRLNKK-RLVIVL---R--EKTYIYDANTLAILDTIDTVPN-------LKGLCAF 141 (337)
Q Consensus 79 iwd~~~~~----~~~~~~~~~~v~~i~~~~~-~~~v~~---d--~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~ 141 (337)
+|..+.+. ++..+.....+..+.-++. .-+++. . +.+.|||+...+++.+-...++ |.-..++
T Consensus 129 ~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred EEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 99988443 3344444455555554332 223332 3 5799999988766655433222 2223344
Q ss_pred eeCCC--ccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 142 SPSLN--ACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 142 ~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
.+-+. ...+|++.. -++|++||.+.++.. .+.+|+++...|+|++|.+|..-|. +..||++.++.+...
T Consensus 209 ~Fl~g~~~~~fat~T~--~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITR--YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGCG 285 (412)
T ss_pred eecCCCCCceEEEEec--ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeeccc
Confidence 44333 567777763 799999999987653 2389999999999999999999998 589999999987764
Q ss_pred ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
..+. .+.|.+|--+|..+ +||+++-|..|+|+|+++.+
T Consensus 286 ~kg~-tGsirsih~hp~~~---~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 286 LKGI-TGSIRSIHCHPTHP---VLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred cCCc-cCCcceEEEcCCCc---eEEeeccceeEEEeecccch
Confidence 3332 45689999999999 99999999999999998743
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.40 E-value=9.2e-11 Score=115.03 Aligned_cols=241 Identities=11% Similarity=0.105 Sum_probs=160.0
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEcCCce-EEEeCCCC---------cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672 5 SSSYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTG---------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg-~~la~g~~~g~-~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (337)
.|...|..++.+++. ++|++|++||+ ++||+..- ++.+......+..+.+.+.++.+++.+ .
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t-------~ 1118 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST-------K 1118 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc-------C
Confidence 355566677777655 99999999995 99997532 123333456677888888999888874 4
Q ss_pred CceEEEEECCCC--CE-E----EE--EEcCCceeEEE-E---cCC-eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672 74 PRRLCLFNTTTG--TA-L----RE--LNFLTSILAVR-L---NKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL 138 (337)
Q Consensus 74 d~~v~iwd~~~~--~~-~----~~--~~~~~~v~~i~-~---~~~-~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 138 (337)
||.|++.++... +. . .. ....+.+..+. + ... .++.++ -+.|..||++.......++.......+
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999988652 11 1 11 12223343332 1 122 333444 568999999987777677666666677
Q ss_pred EEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCC---CCCEEEEEeC-CCcEEEEEEcCCCc
Q 019672 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSS---NGMYIATASE-QGTIIRVFLVSEAT 208 (337)
Q Consensus 139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~---dg~~lat~s~-dg~~i~vwd~~~~~ 208 (337)
.+++.+|.+++++.+. ..|.+.+||++-..... ..+|+.+..+| .....++++. -.+-+-+|++.+|.
T Consensus 1199 TSi~idp~~~WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eEEEecCCceEEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 8888899999999887 48999999998665432 27777777766 3356666655 33346899999997
Q ss_pred eeEeeccC-----------------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672 209 KSYSFRRG-----------------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 209 ~~~~~~~~-----------------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~ 257 (337)
+-..+... .+.-.....++...+. ++.+|+.|..|+.||...+...
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~---~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG---FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc---eeeecCCccceeeccCCCcccc
Confidence 66555322 0011122234444444 8999999999999998776543
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=6.3e-11 Score=116.14 Aligned_cols=231 Identities=9% Similarity=0.089 Sum_probs=135.3
Q ss_pred CCceEEEEECCCC-------CEEEEEE-cCCceeEEEE--cCCeEEEEE-CCeEEEEECCCC--e-----eeeeecCCCC
Q 019672 73 SPRRLCLFNTTTG-------TALRELN-FLTSILAVRL--NKKRLVIVL-REKTYIYDANTL--A-----ILDTIDTVPN 134 (337)
Q Consensus 73 ~d~~v~iwd~~~~-------~~~~~~~-~~~~v~~i~~--~~~~~~v~~-d~~i~i~d~~~~--~-----~~~~~~~~~~ 134 (337)
.||+|++||.+.- +...++. ..+.+..+.. +.+.+++++ ||.|++.++.-- + ..+.... ..
T Consensus 1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-~~ 1147 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-KK 1147 (1431)
T ss_pred CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccc-cC
Confidence 6999999997531 2233444 3446655554 667788877 999999988641 1 1111111 11
Q ss_pred CceEE---EEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672 135 LKGLC---AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 135 ~~~~~---~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~ 204 (337)
...++ ++........++++. .-+.|..||+++..... .+.|++++.+|-+.+++.|+..|.+ -+||+
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T--~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l-~lWDL 1224 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYAT--DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQL-VLWDL 1224 (1431)
T ss_pred CCceEEeecccccccceeEEEEE--eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceE-EEEEe
Confidence 11222 222222223555554 36789999998765432 2889999999999999999999985 69999
Q ss_pred CCCceeEeeccCCcceeEEEEEeecC---CCcccEEEEEe--CCCcEEEEecCCCcccCCCCcc--ccccccccccccee
Q 019672 205 SEATKSYSFRRGTYPSTIFSLSFGQS---MQFQDILVATS--SSGSLHVFSPGFAINQRRGGRT--SSILGSILPESVNE 277 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~~i~~l~fs~d---g~~~~~las~s--~dg~v~iw~l~~~~~~~~~~~~--~~~~~~~~~~~~~~ 277 (337)
+-+..+..+..++ .++|..|..+|- .. ..++++ ..+-|.+|++.++......-.+ ...+...+|.. .
T Consensus 1225 RF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S---~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--~ 1298 (1431)
T KOG1240|consen 1225 RFRVPILSWEHPA-RAPIRHVWLCPTYPQES---VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--D 1298 (1431)
T ss_pred ecCceeecccCcc-cCCcceEEeeccCCCCc---eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc--c
Confidence 9998888775443 466666665543 33 455444 4677999999887432210000 00011112211 0
Q ss_pred ecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672 278 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 315 (337)
Q Consensus 278 ~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~ 315 (337)
.-.+ +.+.......-.++.-+++|+.|+.++.|+..
T Consensus 1299 ~~kp--~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1299 ARKP--DSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CCCC--CcccceeeecccCCceeeecCCccceeeccCC
Confidence 0001 00101111112235678999999999999773
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=102.88 Aligned_cols=233 Identities=11% Similarity=0.089 Sum_probs=145.4
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cC-CceeEEEEcCCeEEEEE--CCeEEEEECCCCee
Q 019672 50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FL-TSILAVRLNKKRLVIVL--REKTYIYDANTLAI 125 (337)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~-~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~ 125 (337)
.+....|..+...+.+. ..|-|++|++.+.+....+. +. ..|+.+..-++..++.. |..+.+|++.....
T Consensus 16 ~v~s~~fqa~~rL~sg~------~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGL------SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred hheehhhccchhhhccc------ccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 34455555555544443 57899999999988777766 33 36777777665433333 66888888754211
Q ss_pred --eeee------------cC-----------C------------CC--------------CceEEEEee--CCCccEEEE
Q 019672 126 --LDTI------------DT-----------V------------PN--------------LKGLCAFSP--SLNACFLAV 152 (337)
Q Consensus 126 --~~~~------------~~-----------~------------~~--------------~~~~~~~~~--~~~~~~la~ 152 (337)
++.+ .. + +. ...++++.. ......++.
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 0110 00 0 00 001223331 112345666
Q ss_pred cCCCCccEEEEEEccCCccc---------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC--CceeEeecc
Q 019672 153 PASTTKGSVLVYNVMELHSH---------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATKSYSFRR 215 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~~---------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~--~~~~~~~~~ 215 (337)
+|+ ++|.|.+||+.++... |..+|.++.|.+.-..=++|+.+... -.|+++. |.+......
T Consensus 170 aGy-Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl-~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 170 AGY-ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL-VMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred Eec-cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc-eeeeeccccCcccccceE
Confidence 777 7999999999886321 33889999998865555677776664 4888753 332111111
Q ss_pred CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672 216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295 (337)
Q Consensus 216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 295 (337)
...+.-|..+..-||++ .||+++.|+.|+||.-++..... ++. .|+.-++.+++.+
T Consensus 248 ~lknpGv~gvrIRpD~K---IlATAGWD~RiRVyswrtl~pLA-----------VLk----------yHsagvn~vAfsp 303 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGK---ILATAGWDHRIRVYSWRTLNPLA-----------VLK----------YHSAGVNAVAFSP 303 (323)
T ss_pred EecCCCccceEEccCCc---EEeecccCCcEEEEEeccCCchh-----------hhh----------hhhcceeEEEeCC
Confidence 11122377788899999 99999999999999987765422 111 1222345667788
Q ss_pred ccCEEEEEEeCCcEEEEEE
Q 019672 296 KRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 296 ~~~~l~~~~~dg~~~~~~~ 314 (337)
+.+-+++++.|+.|-.|.+
T Consensus 304 d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhhccCCceEEeeec
Confidence 8889999999999999986
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=109.84 Aligned_cols=280 Identities=13% Similarity=0.082 Sum_probs=180.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
+.+|.+-|..+.|+..|..|++|+++. +.+||...++....... ..+....+.+.+...-+++.+ .|+.|+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-----~dgqvr 212 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-----RDGQVR 212 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-----ccCcee
Confidence 567889999999999999999999987 59999988877665432 233334455544443344432 689988
Q ss_pred EEECC-CCCEE---EEEEcCCceeEEEE---cCCeEEEEE-CCeEEEEECCCCeeeeeecC--CCC--CceEEEEeeCCC
Q 019672 79 LFNTT-TGTAL---RELNFLTSILAVRL---NKKRLVIVL-REKTYIYDANTLAILDTIDT--VPN--LKGLCAFSPSLN 146 (337)
Q Consensus 79 iwd~~-~~~~~---~~~~~~~~v~~i~~---~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~--~~~--~~~~~~~~~~~~ 146 (337)
+=.+- ++... ....+.++|..+++ ++..+..++ |+.+.-+|++.......+.. ... ..++.+++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 86643 33332 23456667777776 455566666 78888899987654333321 112 246778888887
Q ss_pred cc-EEEEcCCCCccEEEEEEccCCccc------cc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC--C
Q 019672 147 AC-FLAVPASTTKGSVLVYNVMELHSH------CE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVS--E 206 (337)
Q Consensus 147 ~~-~la~~~~~~dg~v~i~d~~~~~~~------~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~--~ 206 (337)
+. .+|++| .|..+++||.+..... ++ -.|++++|+.+|.-|.++-.|-- |++|.-. .
T Consensus 293 nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~ 369 (559)
T KOG1334|consen 293 NTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGD 369 (559)
T ss_pred CccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecccccc
Confidence 76 677777 5899999998754322 11 56999999977665555555543 6788532 2
Q ss_pred C----------ceeEeeccCCcc-eeEEEEEee-cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc
Q 019672 207 A----------TKSYSFRRGTYP-STIFSLSFG-QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES 274 (337)
Q Consensus 207 ~----------~~~~~~~~~~~~-~~i~~l~fs-~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (337)
| +.++....||.. ..|..+.|- |... |+++||+=|.|.||+-++.+-.+- ...
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---yVvSGSDCGhIFiW~K~t~eii~~----------Meg-- 434 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---YVVSGSDCGHIFIWDKKTGEIIRF----------MEG-- 434 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccc---eEEecCccceEEEEecchhHHHHH----------hhc--
Confidence 3 223332234433 348888764 7777 999999999999999655432111 000
Q ss_pred ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672 275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~ 314 (337)
.+-.++.+-.+|-..-|++.+-|-.|+||.=
T Consensus 435 ---------Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 435 ---------DRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ---------ccceEeccCCCCCCchhhccCCccceeeecC
Confidence 1113444444555567888888999999954
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.36 E-value=4.7e-11 Score=107.85 Aligned_cols=251 Identities=12% Similarity=0.098 Sum_probs=154.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEE-eCCCCcE-EEEEeeCCEE---EEE-----EccCCCEEEEEeCCCCCCCCCc
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDGFKIF-DSSTGRL-CYERAVGAFS---IVE-----MLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw-~~~~~~~-~~~~~~~~~~---~~~-----~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
+...|-|+.|......+.++.++.+.+| |+.+... +......-+. +.. ---.++.+++++ .||
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s-------~DG 85 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS-------NDG 85 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEc-------CCc
Confidence 3455778899988888888887777555 4433221 1111000000 000 000112333333 488
Q ss_pred eEEEEECCCCCEEEEEE-cCCceeEEEEcCCeE--EEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 76 RLCLFNTTTGTALRELN-FLTSILAVRLNKKRL--VIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~--~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
++.|.+- .++....+. |...+.+-.|++++. +.++ ||.|++|.-..+ ++... ..+...+.|..+.|+..-+.
T Consensus 86 kf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl-~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 86 RFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTV-VQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred eEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHH-hhcCceeEEEEECCCCCceE
Confidence 8888763 344333443 445788888988764 4444 999999985433 22221 12344577777777766666
Q ss_pred EcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672 152 VPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS 226 (337)
Q Consensus 152 ~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~ 226 (337)
++. .+.+.|=-+..... .|.+-|.++.|+|....+++|++|-. .+|||.. |+.+++ ...+..+|++++
T Consensus 162 ~c~---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~-G~~Lf~--S~~~ey~ITSva 234 (737)
T KOG1524|consen 162 FCQ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ-GANLFT--SAAEEYAITSVA 234 (737)
T ss_pred Eec---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc-Cccccc--CChhccceeeee
Confidence 554 35677766654432 35588999999999999999999988 5999976 555543 344567899999
Q ss_pred eecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC
Q 019672 227 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN 306 (337)
Q Consensus 227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d 306 (337)
|.|| + .++.+|.. +++ ++++. ..+.+.-.|+++ +.++.+|++.
T Consensus 235 ~npd-~---~~~v~S~n-t~R---~~~p~---------------~GSifnlsWS~D--------------GTQ~a~gt~~ 277 (737)
T KOG1524|consen 235 FNPE-K---DYLLWSYN-TAR---FSSPR---------------VGSIFNLSWSAD--------------GTQATCGTST 277 (737)
T ss_pred eccc-c---ceeeeeee-eee---ecCCC---------------ccceEEEEEcCC--------------CceeeccccC
Confidence 9999 6 67777654 555 22111 112334456554 4889999999
Q ss_pred CcEEE
Q 019672 307 GYFVE 311 (337)
Q Consensus 307 g~~~~ 311 (337)
|.+..
T Consensus 278 G~v~~ 282 (737)
T KOG1524|consen 278 GQLIV 282 (737)
T ss_pred ceEEE
Confidence 98765
No 209
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=4.7e-09 Score=94.17 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=143.3
Q ss_pred EcCCCCEEEEEcC-----------CceEEEeCCCCcEEEEEeeCCE---------EEEEEccCCCEEEEEeCCCCCCCCC
Q 019672 15 FNQDNSGFALSTK-----------DGFKIFDSSTGRLCYERAVGAF---------SIVEMLYSSSLLAIVGAGEQPSLSP 74 (337)
Q Consensus 15 fs~dg~~la~g~~-----------~g~~vw~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~d 74 (337)
++|||+.|.++.. +.+.|||+.+++.+.+...++- ....+..+...+.+.-- ..+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-----CCC
Confidence 8999998876655 4579999999998877653221 14455566665544332 138
Q ss_pred ceEEEEECCCCCEEEEEEcCCceeEEEEcCC-eEEEEECCeEEEEECCC-Cee-eeeecC--C-CCCceEE-EEeeCCCc
Q 019672 75 RRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVLREKTYIYDANT-LAI-LDTIDT--V-PNLKGLC-AFSPSLNA 147 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~v~~d~~i~i~d~~~-~~~-~~~~~~--~-~~~~~~~-~~~~~~~~ 147 (337)
+.|.+.|+.+++.+.++..+....-...+++ .++.+.|++.....+.+ ++. ...... . ..+...- .+.+ .++
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg 206 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSG 206 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCC
Confidence 9999999999999999987663333333333 34445577655544432 221 111111 0 0000000 1222 255
Q ss_pred cEEEEcCCCCccEEEEEEccCCccccc-----------------CceEEEEeCCCCCEEEEEeC---------CCcEEEE
Q 019672 148 CFLAVPASTTKGSVLVYNVMELHSHCE-----------------APLAAIVLSSNGMYIATASE---------QGTIIRV 201 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d~~~~~~~~~-----------------~~i~~~~~s~dg~~lat~s~---------dg~~i~v 201 (337)
.++..+. .|.|.+.|+........ +.+.-++++|+|+++..+.. .++.|.+
T Consensus 207 ~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 207 RLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred cEEEEec---CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 5665544 49999999643321110 23344999999998887542 1134689
Q ss_pred EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCcccC
Q 019672 202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR 258 (337)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~~~~ 258 (337)
+|.++++.+.++..+. .+..|+||||++ .+|.+.. .+++|.|+|+.+.+..+
T Consensus 284 iD~~t~kvi~~i~vG~---~~~~iavS~Dgk--p~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 284 VDAKTGKRLRKIELGH---EIDSINVSQDAK--PLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EECCCCeEEEEEeCCC---ceeeEEECCCCC--eEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9999999999886543 578999999998 2444444 67899999998776543
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=8.2e-10 Score=103.43 Aligned_cols=209 Identities=16% Similarity=0.074 Sum_probs=132.5
Q ss_pred eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (337)
Q Consensus 30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (337)
+.++|.+..... .......+....+.+++..+++++.. ..+..|.+||+.+++......+...+.+..|+|++
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~----~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE----SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEec----CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence 577787765332 22222345566778888888887632 12568999999988755444445555667888875
Q ss_pred EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEE--EEccCCcccc----cCc
Q 019672 107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV--YNVMELHSHC----EAP 176 (337)
Q Consensus 107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i--~d~~~~~~~~----~~~ 176 (337)
++++. ++ .|++||+.+++....... . .......++|++..|++.+. .+|..+| +|+.++.... ...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~--~~~~~~~wSPDG~~I~f~s~-~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDG-R--SNNTEPTWFPDSQNLAYTSD-QAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCC-C--CCcCceEECCCCCEEEEEeC-CCCCceEEEEECCCCCeEEeecCCCC
Confidence 44333 33 699999988765433222 1 23345567788888877653 2444444 4666543221 134
Q ss_pred eEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc---EEEEec
Q 019672 177 LAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFSP 251 (337)
Q Consensus 177 i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~---v~iw~l 251 (337)
....+|+|||++|+..+.++ ..|.+||+.+++. ..+.... ...+..|||||+ +|+.++.++. +.++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~---~~~~p~~SpDG~---~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF---LDETPSIAPNGT---MVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC---CCCCceECCCCC---EEEEEEcCCCceEEEEEEC
Confidence 56789999999998876543 2357899988864 3343221 234578999999 8999888865 667776
Q ss_pred CC
Q 019672 252 GF 253 (337)
Q Consensus 252 ~~ 253 (337)
+.
T Consensus 406 ~G 407 (429)
T PRK03629 406 DG 407 (429)
T ss_pred CC
Confidence 43
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=1.3e-09 Score=92.85 Aligned_cols=164 Identities=15% Similarity=0.274 Sum_probs=114.9
Q ss_pred ceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC-CCCEEEEEEcCC---ceeEEEEc
Q 019672 29 GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTALRELNFLT---SILAVRLN 103 (337)
Q Consensus 29 g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-~~~~~~~~~~~~---~v~~i~~~ 103 (337)
.+.|||=...+.+.+... .++..+. .+.+.++++- +++|.||.+. .-+.++.+.... ..+++..+
T Consensus 76 kviIWDD~k~~~i~el~f~~~I~~V~--l~r~riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSFNSEIKAVK--LRRDRIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred eEEEEecccCcEEEEEEeccceeeEE--EcCCeEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 378999555566655543 3444333 4566666664 5799999987 445566554332 34444444
Q ss_pred CCeEEEEE----CCeEEEEECCCCee--eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE-EEEEEccCCccccc--
Q 019672 104 KKRLVIVL----REKTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS-VLVYNVMELHSHCE-- 174 (337)
Q Consensus 104 ~~~~~v~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~-v~i~d~~~~~~~~~-- 174 (337)
.+..+++. -|.|.|-|+...+. ...+..|. ..+.+++.+-+|.++|+++ +.|+ |+|||..++..+.+
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeee
Confidence 44444443 57899999976544 24454444 4577778888899999998 5677 79999999987654
Q ss_pred -----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672 175 -----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 207 (337)
Q Consensus 175 -----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~ 207 (337)
+.|.|++||||+.+||.+|+.|+ +.||.++..
T Consensus 222 RG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~ 258 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDT 258 (346)
T ss_pred cCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecC
Confidence 78999999999999999999998 599988753
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=1.9e-09 Score=98.41 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=117.2
Q ss_pred CCceEEEeCCCCcEEEEEeeC-CE-EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcC
Q 019672 27 KDGFKIFDSSTGRLCYERAVG-AF-SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK 104 (337)
Q Consensus 27 ~~g~~vw~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~ 104 (337)
++.+.|.|.++.+.+.....+ .. ..+.+..++.++.+.+ .|+.|.++|+.+++.+.++.......++++++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-------CCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 345799999999988877643 33 2234455566655544 38999999999999999999888888899876
Q ss_pred C--eEEEEE--CCeEEEEECCCCeeeeeecCCCC-----CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-
Q 019672 105 K--RLVIVL--REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE- 174 (337)
Q Consensus 105 ~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~- 174 (337)
+ +++++. .+.+.++|.++.++++.+.+... ...+.++..++.+..+++.-. +.++|.+.|....+....
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-d~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-DTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-TTTEEEEEETTTSSCEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-cCCeEEEEEecccccccee
Confidence 5 455554 88999999999999998865422 224556665666664444433 468899999876543321
Q ss_pred -----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 175 -----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 175 -----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
.......|+|+|++++.+......|-++|.++++.+..+
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 556789999999988776544444678998888765543
No 213
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=7.4e-10 Score=101.34 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=134.3
Q ss_pred CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc----CCceeEEEEc--------------------CCeEEE--EE-
Q 019672 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF----LTSILAVRLN--------------------KKRLVI--VL- 111 (337)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~i~~~--------------------~~~~~v--~~- 111 (337)
.++|+..+ |+.+|+||..+++...++.- .+...+..|. .+..++ ++
T Consensus 6 ~~~A~~~~-------~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 6 DYFALSTG-------DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred heEeecCC-------CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 45666655 89999999999987766532 1223333331 122222 22
Q ss_pred CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCC
Q 019672 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNG 186 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg 186 (337)
.|.|.+|++..++....+.+..++..+.++..+.+-..+.+++ .|+.+..|+.+.....+. ..+.+++++|||
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~--ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG--ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC--CceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 7899999999999988888777777887777665555666666 599999999988765543 678999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC-----CCcccEEEEEeCCCcEEEEecCCC
Q 019672 187 MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS-----MQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 187 ~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d-----g~~~~~las~s~dg~v~iw~l~~~ 254 (337)
+.|++||. . |++||+++++.+..|. +|..+|.+++|.-+ |.+ +|.+...+.-+.+|-+...
T Consensus 157 ~~l~~as~--~-ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~--vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 KILLTASR--Q-IKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKY--VLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CEEEeccc--e-EEEEEccCceEEEEec--CCCcceEEEEEEEeccccccce--eeeccccccceeEEEEEcc
Confidence 99999974 3 7999999999999996 35778999999987 662 5555566667899988764
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5.6e-10 Score=104.55 Aligned_cols=214 Identities=12% Similarity=0.055 Sum_probs=134.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC----CceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTK----DGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~----~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
+...+.+.+|+|||+.|+..+. ..+.+|++.+++...-.. .+......+.+++..++++... .....|.+|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~----~g~~~I~~~ 272 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK----TGSLNLYVM 272 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC----CCCcEEEEE
Confidence 4567899999999999885432 236888998885432111 1223345778888888876542 113469999
Q ss_pred ECCCCCEEEEEEcCCceeEEEEcCCe--EEEEEC--C--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVLR--E--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
|+++++..........+....|+|++ ++.+.+ + .|+++|+.+++.. .+..... ......++|++.++++.+
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS--QNQDADVSSDGKFMVMVS 349 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC--CccCEEECCCCCEEEEEE
Confidence 99988765444444466778888765 444443 2 5666677766432 3322221 223445667788887765
Q ss_pred CC-CccEEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCCc--EEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 155 ST-TKGSVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 155 ~~-~dg~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg~--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
.. ....|.+||+.++.... . .......|+|||++|+.++.++. .+.++++ +|+....+.. +...+...+||
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~~p~Ws 426 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVKFPAWS 426 (429)
T ss_pred ccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcCCcccC
Confidence 31 13468889987765321 1 23456789999999999998864 3567777 4555555542 24457778888
Q ss_pred c
Q 019672 229 Q 229 (337)
Q Consensus 229 ~ 229 (337)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 7
No 215
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.31 E-value=1.7e-11 Score=107.12 Aligned_cols=114 Identities=14% Similarity=0.217 Sum_probs=84.7
Q ss_pred EEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCcc--------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672 138 LCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHS--------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVF 202 (337)
Q Consensus 138 ~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~--------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vw 202 (337)
+..+.+.++.. .+|++|. |..|+||-+..... .|+..|+++.|+|+|..||+|+++|.+ -+|
T Consensus 16 v~s~dfq~n~~~~laT~G~--D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v-~lW 92 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGG--DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV-FLW 92 (434)
T ss_pred eEEEEeccCcccceecccC--ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE-EEE
Confidence 34444433333 8899984 89999998765332 144889999999999999999999974 699
Q ss_pred EcC--------C-----Cc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 203 LVS--------E-----AT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 203 d~~--------~-----~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
-.. + .+ .+...-++ |...|+.++|+||+. ++++++-|+++++||+..+....
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEe
Confidence 765 2 10 11222233 466799999999999 99999999999999998876543
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.8e-10 Score=99.31 Aligned_cols=202 Identities=10% Similarity=0.146 Sum_probs=135.3
Q ss_pred CCCEEEEEcCCc-eEEEeCCCC-----cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672 18 DNSGFALSTKDG-FKIFDSSTG-----RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL 91 (337)
Q Consensus 18 dg~~la~g~~~g-~~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~ 91 (337)
||. |.+|.++| +.+|..+.+ +++.-..+.++..++-......++..||-+ .-+.++|||+++.+++.+-
T Consensus 115 dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke----~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 115 DGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKE----NINELKIWDLEQSKQIWSA 189 (412)
T ss_pred CCE-EEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchh----cccceeeeecccceeeeec
Confidence 444 45555555 699987733 333333345566665544444444444421 1278999999998777653
Q ss_pred Ec--------CCce--eEEEEcC----CeEEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 92 NF--------LTSI--LAVRLNK----KRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 92 ~~--------~~~v--~~i~~~~----~~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
.. .-|| +++.|-+ ..++.++ -+.+++||.+.+ +++.++....+ .+.++...|.+..+.++.
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~--~is~~~l~p~gn~Iy~gn- 266 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN--PISSTGLTPSGNFIYTGN- 266 (412)
T ss_pred cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC--cceeeeecCCCcEEEEec-
Confidence 21 1243 4566633 3455555 679999999865 55667765555 455666667777888877
Q ss_pred CCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672 156 TTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~ 229 (337)
.-|.+..||++.++.. ..+.|+++..+|.+++||+++-|.. +||+|+++.+++..... .+.+++|-+.+
T Consensus 267 -~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv---Ks~lt~il~~~ 341 (412)
T KOG3881|consen 267 -TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV---KSRLTFILLRD 341 (412)
T ss_pred -ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh---hccccEEEecC
Confidence 4799999999988754 2389999999999999999999975 79999999877765432 23467777765
Q ss_pred CCC
Q 019672 230 SMQ 232 (337)
Q Consensus 230 dg~ 232 (337)
+-+
T Consensus 342 ~~n 344 (412)
T KOG3881|consen 342 DVN 344 (412)
T ss_pred Ccc
Confidence 543
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.29 E-value=3.8e-09 Score=96.47 Aligned_cols=234 Identities=12% Similarity=0.144 Sum_probs=138.0
Q ss_pred EEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672 11 FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL 88 (337)
Q Consensus 11 ~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~ 88 (337)
..+.|+|||+++.+.+.++ +.++|+.+++.+.+...+ ....++++.++.+++.... .++++.++|.++.+++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--EE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec------CCCceeEeccccccce
Confidence 4568999999988777665 699999999988776543 3445677778887765543 5899999999999999
Q ss_pred EEEEcC--------CceeEEEEcCC--eEEEEE--CCeEEEEECCCCeee--eeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 89 RELNFL--------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 89 ~~~~~~--------~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
.++... +.+.+|..++. .++++. .+.|-+-|..+.+.+ ..+..... .....++|++.++..+.
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~---~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRF---PHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TT---EEEEEE-TTSSEEEEEE
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccc---ccccccCcccceeeecc
Confidence 887643 25666765443 345555 367877787765433 23333222 23345566666655443
Q ss_pred CCCccEEEEEEccCCccc---------cc--------------------------------------------------C
Q 019672 155 STTKGSVLVYNVMELHSH---------CE--------------------------------------------------A 175 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~---------~~--------------------------------------------------~ 175 (337)
. .++.|-++|..+.+.. +. +
T Consensus 191 ~-~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 191 N-GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp G-GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred c-ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 2 3556767766543211 00 1
Q ss_pred ceEEEEeCCCCCEEEEE---eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC-cEEEEec
Q 019672 176 PLAAIVLSSNGMYIATA---SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSP 251 (337)
Q Consensus 176 ~i~~~~~s~dg~~lat~---s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~v~iw~l 251 (337)
.-.-+.-+|+++++... +.+...|.|+|.++.+.+.++..+. ...+..+.|++||+ ...++.-..+ .|.|||.
T Consensus 270 ~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~--~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 270 GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGK--EVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSS--EEEEEEE--TTEEEEEET
T ss_pred CcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCC--EEEEEEecCCCEEEEEEC
Confidence 11456779999999988 4443347899999998887775332 12378899999999 2444444444 7999998
Q ss_pred CCCccc
Q 019672 252 GFAINQ 257 (337)
Q Consensus 252 ~~~~~~ 257 (337)
++.+..
T Consensus 347 ~Tl~~~ 352 (369)
T PF02239_consen 347 KTLKEK 352 (369)
T ss_dssp TTTEEE
T ss_pred CCcEEE
Confidence 877653
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=9e-11 Score=106.34 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=128.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
+++|.+=|+|+.|+.||.+|++|++|. +.|||.-..|+++..+. ..+..+.+.+..+--+++++ ..|..|+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg-----AgDk~i~ 120 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG-----AGDKLIK 120 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec-----cCcceEE
Confidence 568899999999999999999999987 79999887787776543 45566677666544444444 2599999
Q ss_pred EEECCCCC----------EEEEEEcC-CceeEEEEc---CCeEEEEE-CCeEEEEECCCCeeeee-------e-cCCCCC
Q 019672 79 LFNTTTGT----------ALRELNFL-TSILAVRLN---KKRLVIVL-REKTYIYDANTLAILDT-------I-DTVPNL 135 (337)
Q Consensus 79 iwd~~~~~----------~~~~~~~~-~~v~~i~~~---~~~~~v~~-d~~i~i~d~~~~~~~~~-------~-~~~~~~ 135 (337)
++|+...+ .+..+..+ ..|..|+.. |+.+..++ ||+|+-||++....-.. + .-.+.-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99987422 12222222 356666654 44566666 99999999986311100 0 001111
Q ss_pred ceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcc------------------c------cc-----------CceEE
Q 019672 136 KGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHS------------------H------CE-----------APLAA 179 (337)
Q Consensus 136 ~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~------------------~------~~-----------~~i~~ 179 (337)
..+-++..+|. ..+||++| .+-..++||.+.... + |- .-++-
T Consensus 201 ielk~ltisp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred heeeeeeecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 22233344443 34677777 488999999432110 0 00 12567
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
++|+|+|..|...-. |..++++|+..++.+..+
T Consensus 279 vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWG-GEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEECCCCcEEEEeeC-CeEEEEEeecCCCCceee
Confidence 899999986554433 223689999888765443
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=3.4e-09 Score=91.86 Aligned_cols=222 Identities=14% Similarity=0.163 Sum_probs=143.0
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
...+..++|+|.--.||++..|. +++||-..... +.......+.++++-+.+...+.++. ..-|.+|...
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-------r~gIciW~~s 170 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-------RAGICIWSDS 170 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-------cceeEEEEcC
Confidence 34588999999777788888765 59998655321 22222356777777665544444443 4679999754
Q ss_pred CC----CE----------EEEEEcCCceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672 84 TG----TA----------LRELNFLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 84 ~~----~~----------~~~~~~~~~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
.. +. +.....+.+|+.+.+++++...++ +..|.|||..++..+.-. .....++.-+.++|
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP 248 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC
Confidence 21 11 112233458999999998766554 679999999988655443 22344666778888
Q ss_pred CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce-----------
Q 019672 146 NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK----------- 209 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~----------- 209 (337)
|+.++..+.. |+..++|........ -.+.|...+|+|+|++|.-++.... +|+.+.-.+.
T Consensus 249 dgd~lfaAt~--davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 249 DGDVLFAATC--DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred CCCEEEEecc--cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccce
Confidence 8889888774 899999965433211 1278999999999998776665443 3555431111
Q ss_pred ----eEeec-----cCC--cceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 210 ----SYSFR-----RGT--YPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 210 ----~~~~~-----~~~--~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
+..+. .+. --.++.+|+|.|.|. +||+.-..+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe---yLav~fKg~ 367 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE---YLAVIFKGQ 367 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCC---EEEEEEcCC
Confidence 11110 010 023578999999999 999875544
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.27 E-value=1.8e-10 Score=104.21 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=128.2
Q ss_pred EEEEEcCCc-eEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE-EEcCCc
Q 019672 21 GFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE-LNFLTS 96 (337)
Q Consensus 21 ~la~g~~~g-~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~ 96 (337)
.|+.+++|| +.+.+- .++..... +.+.+..-.+.+++..+ ++.| .||.|++|.- +|-...+ .....+
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgL--lt~G-----EDG~iKiWSr-sGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGL--LTAG-----EDGVIKIWSR-SGMLRSTVVQNEES 147 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCcee--eeec-----CCceEEEEec-cchHHHHHhhcCce
Confidence 466666665 555553 23332222 22333333444455544 4443 5999999974 3432222 234668
Q ss_pred eeEEEEcCCe--EEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc----
Q 019672 97 ILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---- 170 (337)
Q Consensus 97 v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~---- 170 (337)
|.+++|.|+. ++.+..+.+.|=.+.....+-..+.|+ .-++++++++.+.+++++| +|-..+|||.....
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHD--GiiL~~~W~~~s~lI~sgG--ED~kfKvWD~~G~~Lf~S 223 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHD--GLVLSLSWSTQSNIIASGG--EDFRFKIWDAQGANLFTS 223 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccC--cEEEEeecCccccceeecC--CceeEEeecccCcccccC
Confidence 9999997754 444557788887776544444455443 3567889999999999998 79999999986433
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672 171 SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL 246 (337)
Q Consensus 171 ~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v 246 (337)
..|+.||++++|+|| +.++.+|.. + .| |.. ...+.|..++||+||. .++.|...|.+
T Consensus 224 ~~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~-p~~GSifnlsWS~DGT---Q~a~gt~~G~v 280 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSS-PRVGSIFNLSWSADGT---QATCGTSTGQL 280 (737)
T ss_pred Chhccceeeeeeccc-cceeeeeee-e-ee------------ecC-CCccceEEEEEcCCCc---eeeccccCceE
Confidence 346699999999999 777777764 3 45 111 1234599999999999 99999998875
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=3.9e-10 Score=97.59 Aligned_cols=149 Identities=11% Similarity=0.180 Sum_probs=102.1
Q ss_pred ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC---
Q 019672 96 SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--- 169 (337)
Q Consensus 96 ~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--- 169 (337)
.+..++|++.. +++++ |+.|++||-+. .....++ +.....+.++++-|.+.-..+.+. .+-|.||.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-s~sQrnvtclawRPlsaselavgC--r~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-SVSQRNVTCLAWRPLSASELAVGC--RAGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec-chhhcceeEEEeccCCcceeeeee--cceeEEEEcCccccc
Confidence 56677787643 33444 88999999766 3333333 233455666666554333222333 355999975421
Q ss_pred -cc------cc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672 170 -HS------HC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 234 (337)
Q Consensus 170 -~~------~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~ 234 (337)
+. .+ ..+|+++.|++||..++++|-+...|.|||..+++.+.-..++ ...+.-+.|||||.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd-- 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGD-- 251 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCCC--
Confidence 10 01 1789999999999999999988777899999998875433232 23477799999999
Q ss_pred cEEEEEeCCCcEEEEecCC
Q 019672 235 DILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 235 ~~las~s~dg~v~iw~l~~ 253 (337)
+|.+++-|+..++|+...
T Consensus 252 -~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 252 -VLFAATCDAVFRLWQENQ 269 (445)
T ss_pred -EEEEecccceeeeehhcc
Confidence 999999999999997543
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=4.6e-10 Score=108.63 Aligned_cols=272 Identities=14% Similarity=0.136 Sum_probs=161.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee-CCEEEEE----EccCCCEEEEEeCCCCCCCCCceEE
Q 019672 4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-GAFSIVE----MLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
-++-.++++.++=. .+|.+|.--.+.+||+..+.++..... +.+..-. ..-.+..++.+.. -+.+.
T Consensus 4 ~s~~~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~-------~~~v~ 74 (967)
T KOG0974|consen 4 VSSLGPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAK-------SDEVY 74 (967)
T ss_pred ccccccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEe-------eccee
Confidence 35567777877766 678888777789999998866543211 0000000 0000111111111 00111
Q ss_pred EEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE--EEEeeCCCccEEEEc
Q 019672 79 LFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL--CAFSPSLNACFLAVP 153 (337)
Q Consensus 79 iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~ 153 (337)
.=+... +.... ...-| ..+.+....+++.. ++.+.+||...+..+..+....-..-. +-+-.+++..+++++
T Consensus 75 ~~~~~~-~~~~~--~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 75 VKEASN-QIIER--FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred ecchhh-hhhhh--ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence 000000 00000 01111 12223344455554 889999999888777666433221111 112235666788877
Q ss_pred CCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672 154 ASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 154 ~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
. .-+.|.+|+..-... .|++.|.++.++-||+++|+.|+|.+ +|+|++.+.+.......+ |.+.|..+.|.
T Consensus 152 s--v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg-HsaRvw~~~~~ 227 (967)
T KOG0974|consen 152 S--VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFG-HSARVWACCFL 227 (967)
T ss_pred c--ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccccc-ccceeEEEEec
Confidence 6 479999999863222 35699999999999999999999987 799999998876522223 57789999999
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672 229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY 308 (337)
Q Consensus 229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 308 (337)
|+ .+++++.|.+.++|+.....- ..+....-...|..+. .+....++++..||.
T Consensus 228 ~n-----~i~t~gedctcrvW~~~~~~l-----------~~y~~h~g~~iw~~~~----------~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 228 PN-----RIITVGEDCTCRVWGVNGTQL-----------EVYDEHSGKGIWKIAV----------PIGVIIKVTGGNDST 281 (967)
T ss_pred cc-----eeEEeccceEEEEEeccccee-----------hhhhhhhhcceeEEEE----------cCCceEEEeeccCcc
Confidence 87 499999999999996543221 1121222223555533 223356889999999
Q ss_pred EEEEEEecC
Q 019672 309 FVEYIFSIN 317 (337)
Q Consensus 309 ~~~~~~~~~ 317 (337)
++.|.+...
T Consensus 282 lk~~~l~~r 290 (967)
T KOG0974|consen 282 LKLWDLNGR 290 (967)
T ss_pred hhhhhhhcc
Confidence 999988543
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=6.7e-10 Score=95.56 Aligned_cols=282 Identities=12% Similarity=0.124 Sum_probs=155.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-eEEEeCC-CCc--EE-E-EEeeC--------------CEEEEEEccCCCE-EEEEeC
Q 019672 8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSS-TGR--LC-Y-ERAVG--------------AFSIVEMLYSSSL-LAIVGA 66 (337)
Q Consensus 8 ~~v~~~~fs~dg~~la~g~~~g-~~vw~~~-~~~--~~-~-~~~~~--------------~~~~~~~~~~~~~-~~~~~~ 66 (337)
.-|.++.|+..|.+||+|..+| +.+|.-+ ..+ .. + ..+.| .+.-+.+....+. ..++++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 4589999999999999999888 5677422 221 11 1 11111 1122344444433 234444
Q ss_pred CCCCCCCCceEEEEECCCCCEEE-EEEcC-----CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672 67 GEQPSLSPRRLCLFNTTTGTALR-ELNFL-----TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (337)
Q Consensus 67 g~~~~~~d~~v~iwd~~~~~~~~-~~~~~-----~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (337)
.|++|++|-+....... .+..+ +.+..+.+ -+.. ...+... .+ +.+....++--+.
T Consensus 106 ------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----p~~~~~~~~vea-----~p-rRv~aNaHtyhiN 168 (433)
T KOG1354|consen 106 ------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----PVEGRHDLEVEA-----SP-RRVYANAHTYHIN 168 (433)
T ss_pred ------CCcceeeeeeeccccccccccccccCCCCccceeec-----eeeccccceeee-----ee-eeeccccceeEee
Confidence 49999999876433221 11111 11221111 0000 0000000 01 1122233444467
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------c-----cCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcC
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------C-----EAPLAAIVLSSN-GMYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~-----~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~ 205 (337)
+++.+.|...+.++. |-.|.+|.+.-...- + +.-|++..|+|. .+.++..|+.|+ ||+-|++
T Consensus 169 SIS~NsD~Et~lSAD---dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR 244 (433)
T KOG1354|consen 169 SISVNSDKETFLSAD---DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMR 244 (433)
T ss_pred eeeecCccceEeecc---ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeech
Confidence 888888888887764 788999987633211 0 156899999994 568999999998 7999998
Q ss_pred CCce------eEeeccCCc--------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc--
Q 019672 206 EATK------SYSFRRGTY--------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS-- 269 (337)
Q Consensus 206 ~~~~------~~~~~~~~~--------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~-- 269 (337)
...+ +.+...... -+.|..+.||++|+ |+++-+- -+|+|||+.....+..--+-..++..
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr---yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR---YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc---EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 4322 211111110 12378899999999 7876543 58999999765543310000011110
Q ss_pred ---c----ccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeee
Q 019672 270 ---I----LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREF 330 (337)
Q Consensus 270 ---~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 330 (337)
+ .-+.+.+.|+- ++.++++|+-++.+++|+++.. ..+...++.+.
T Consensus 321 c~lYEnD~IfdKFec~~sg--------------~~~~v~TGsy~n~frvf~~~~g--sk~d~tl~asr 372 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSG--------------NDSYVMTGSYNNVFRVFNLARG--SKEDFTLEASR 372 (433)
T ss_pred HHHhhccchhheeEEEEcC--------------CcceEecccccceEEEecCCCC--cceeecccccc
Confidence 1 11223444443 3368999999999999985433 22234444433
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=8.9e-09 Score=93.88 Aligned_cols=273 Identities=14% Similarity=0.161 Sum_probs=161.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCC-----CceEEEEE
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS-----PRRLCLFN 81 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----d~~v~iwd 81 (337)
..+.+...++++|++||.+.++-++|++..+.+.+.+........+.+.+..+++. .-....... .-.+.+|+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~--T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLL--TWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccc--cccccccccCCCCCCCceeeee
Confidence 44577889999999999999888999999888665554444444444444444442 211111111 23578999
Q ss_pred CCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE--CCeEEEEECCCCeee-eeecCCCCCceEEEEeeCCCccEEEE--cCC
Q 019672 82 TTTGTALRELNFLT-SILAVRLNKKRLVIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFLAV--PAS 155 (337)
Q Consensus 82 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~--~~~ 155 (337)
++++.....+.-.. .-....|+.+..+++- .+.+++|++.+.+.+ +.+. ........+++.|....+|+ ++.
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~--~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS--VSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeee--ccceeeEEecCCCCCceEEEEccCC
Confidence 99865544443222 2256777777666654 778999988764322 2222 11223334444433333332 110
Q ss_pred C-CccEEEEEE---------------------------------------------------------ccCCcc----cc
Q 019672 156 T-TKGSVLVYN---------------------------------------------------------VMELHS----HC 173 (337)
Q Consensus 156 ~-~dg~v~i~d---------------------------------------------------------~~~~~~----~~ 173 (337)
. .-..|+||. ++.... ..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 0 112333333 221110 01
Q ss_pred cCceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEE
Q 019672 174 EAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHV 248 (337)
Q Consensus 174 ~~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~i 248 (337)
++||.++.|+|+|+.++..- .-.. +-|||++ +..+..|..| +=+++-|+|.|+ +|+.++-+ |.+.|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnlr-~~~v~df~eg----pRN~~~fnp~g~---ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNLR-GKPVFDFPEG----PRNTAFFNPHGN---IILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccce-EEEEcCC-CCEeEeCCCC----CccceEECCCCC---EEEEeecCCCCCceEE
Confidence 28999999999998777653 3334 5789985 6777777554 346789999999 88888776 78999
Q ss_pred EecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe------CCcEEEEEEe
Q 019672 249 FSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY------NGYFVEYIFS 315 (337)
Q Consensus 249 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~~~~~~~~ 315 (337)
||+...+...+ ...+......|++.+ .++++.+. |+.++||...
T Consensus 341 wDv~n~K~i~~---------~~a~~tt~~eW~PdG--------------e~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPNRKLIAK---------FKAANTTVFEWSPDG--------------EYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred Eeccchhhccc---------cccCCceEEEEcCCC--------------cEEEEEeccccEEecCCeEEEEec
Confidence 99987443221 111223345676655 45554432 6778888775
No 225
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.5e-09 Score=94.27 Aligned_cols=235 Identities=13% Similarity=0.182 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCC----CCCCceEEEEECCCC
Q 019672 10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP----SLSPRRLCLFNTTTG 85 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~d~~v~iwd~~~~ 85 (337)
=+.+.|||-|++|++=-..|+.+|--++...+....+.++..+++++.-++++.-+..... ......++|||+.+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 3689999999999999999999999888877777766788888888877887666543221 123468999999999
Q ss_pred CEEEEEEc--CC-ceeE-EEEcCC--eEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC--
Q 019672 86 TALRELNF--LT-SILA-VRLNKK--RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT-- 157 (337)
Q Consensus 86 ~~~~~~~~--~~-~v~~-i~~~~~--~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 157 (337)
...+.+.. .. .+.- +.|+.+ +++....++|.||+.....++..-. -...++-.++++|.+.+||+=.-..
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ks--lki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKS--LKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccc--cCCccccCcccCCCcceEEEEcccccC
Confidence 98887765 22 2222 345544 4444447899999887654332110 1223444445555555554321000
Q ss_pred ------------ccE-----------------------------------------EEEEEccCCccc-----ccCceEE
Q 019672 158 ------------KGS-----------------------------------------VLVYNVMELHSH-----CEAPLAA 179 (337)
Q Consensus 158 ------------dg~-----------------------------------------v~i~d~~~~~~~-----~~~~i~~ 179 (337)
... +.|+.++..... .+.+|..
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~ 450 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIA 450 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheee
Confidence 000 111111111100 0167888
Q ss_pred EEeCCCCCEEEEEeCC--CcEEEEEEcCC-C---ceeEeeccCCcceeEEEEEeecCCCcccEEEEEe---CCCcEEEEe
Q 019672 180 IVLSSNGMYIATASEQ--GTIIRVFLVSE-A---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFS 250 (337)
Q Consensus 180 ~~~s~dg~~lat~s~d--g~~i~vwd~~~-~---~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s---~dg~v~iw~ 250 (337)
.+|.|.|..+++-+.. .+.+++|-+++ + .++.++.. ...+.|.|||.|+ +++++. ..|.+.++|
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~---fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGR---FVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCc---EEEEEEecccccceEEEe
Confidence 9999999988876533 23367888773 2 23444432 2367899999999 777664 458899999
Q ss_pred cCC
Q 019672 251 PGF 253 (337)
Q Consensus 251 l~~ 253 (337)
++.
T Consensus 524 ~~~ 526 (698)
T KOG2314|consen 524 TDY 526 (698)
T ss_pred cch
Confidence 874
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=1.2e-09 Score=90.94 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=84.4
Q ss_pred cCCceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEc
Q 019672 93 FLTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNV 166 (337)
Q Consensus 93 ~~~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~ 166 (337)
..++|.+++|+|+ .++++. +..|.+||++ ++.+..+.. . ....+.++|++.+++++|.. ..|.|.+||+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~--~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--Q--PRNTISWSPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--C--CceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 3457999999876 454543 5689999997 666666643 2 23456778888899988731 3588999999
Q ss_pred cCCccccc---CceEEEEeCCCCCEEEEEeC------CCcEEEEEEcCCCceeEee
Q 019672 167 MELHSHCE---APLAAIVLSSNGMYIATASE------QGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 167 ~~~~~~~~---~~i~~~~~s~dg~~lat~s~------dg~~i~vwd~~~~~~~~~~ 213 (337)
++.+.+.+ ..++.++|||||++|++++. |.. ++||+.. |+++.+.
T Consensus 133 ~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 133 RKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceecccc-EEEEEec-CeEeEec
Confidence 98776644 56899999999999999875 444 6899984 7776654
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.8e-09 Score=97.95 Aligned_cols=209 Identities=15% Similarity=0.063 Sum_probs=128.9
Q ss_pred eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (337)
Q Consensus 30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (337)
+.+||.+..... .......+....+.++++.+++++.. .....|.+||+.+++......+.....+..|++++
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~----~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFE----RGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecC----CCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 578887655332 22222334445667778888887642 12467999999988765443444455567888765
Q ss_pred EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE--EEEEEccCCcccc----cCc
Q 019672 107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS--VLVYNVMELHSHC----EAP 176 (337)
Q Consensus 107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~--v~i~d~~~~~~~~----~~~ 176 (337)
+++.. ++ .|++||+.+++.. .+..... .....+++|++..+++.+. .+|. |.++|+.++.... ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEEeecCCCC
Confidence 43333 33 6999999887643 3322211 2234566778888877653 3444 6666766554321 134
Q ss_pred eEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEec
Q 019672 177 LAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSP 251 (337)
Q Consensus 177 i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l 251 (337)
....+|||||++|+..+.++ ..|.+||+.+++.. .+..+. ......|+|||+ +|+..+.+ +.|.++++
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~---~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGS---MVLYATREGGRGVLAAVST 410 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEEC
Confidence 55789999999999876543 13689999887754 443321 234578999999 77776664 34777776
Q ss_pred CC
Q 019672 252 GF 253 (337)
Q Consensus 252 ~~ 253 (337)
+.
T Consensus 411 ~g 412 (433)
T PRK04922 411 DG 412 (433)
T ss_pred CC
Confidence 53
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=2.2e-07 Score=84.70 Aligned_cols=269 Identities=14% Similarity=0.121 Sum_probs=155.9
Q ss_pred CceEEEeC--CCCcEEEEE---eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC--C--EEEEEE-cCCce
Q 019672 28 DGFKIFDS--STGRLCYER---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--T--ALRELN-FLTSI 97 (337)
Q Consensus 28 ~g~~vw~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~--~--~~~~~~-~~~~v 97 (337)
+++.+|++ +++++.... .......+.+.++.+.+..+.... ..++.|..|.+... + .+.+.. .....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 36766655 666553322 224445566666777666655421 13678988887653 3 233333 33455
Q ss_pred eEEEEcC--CeEEEEE--CCeEEEEECCC-Ceeeee---ecC--------CCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672 98 LAVRLNK--KRLVIVL--REKTYIYDANT-LAILDT---IDT--------VPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 98 ~~i~~~~--~~~~v~~--d~~i~i~d~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
+.+.+++ +.++++. ++.+.++++.. +.+... +.. .......-++.++|++.+++++.. ....|
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~D~v 168 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GADRV 168 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TTTEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CCCEE
Confidence 6688855 4566665 88999999976 333222 110 011122335566788888877764 35679
Q ss_pred EEEEccCCc--ccc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC--CCce--eEeec---cCCcc-eeEE
Q 019672 162 LVYNVMELH--SHC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVS--EATK--SYSFR---RGTYP-STIF 223 (337)
Q Consensus 162 ~i~d~~~~~--~~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~--~~~~--~~~~~---~~~~~-~~i~ 223 (337)
.+|++.... ... ...-+.++|+|||+++....+....|.++++. +++. +..+. .+... ....
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999987654 211 15678999999999998888766667899887 4432 22221 11111 1367
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCCc-ccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAI-NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV 302 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~ 302 (337)
.|++||||++ ++++....++|.+|+++... .... +. .+......+ ..+...+++++|++
T Consensus 249 ~i~ispdg~~--lyvsnr~~~sI~vf~~d~~~g~l~~-------~~--------~~~~~G~~P---r~~~~s~~g~~l~V 308 (345)
T PF10282_consen 249 EIAISPDGRF--LYVSNRGSNSISVFDLDPATGTLTL-------VQ--------TVPTGGKFP---RHFAFSPDGRYLYV 308 (345)
T ss_dssp EEEE-TTSSE--EEEEECTTTEEEEEEECTTTTTEEE-------EE--------EEEESSSSE---EEEEE-TTSSEEEE
T ss_pred eEEEecCCCE--EEEEeccCCEEEEEEEecCCCceEE-------EE--------EEeCCCCCc---cEEEEeCCCCEEEE
Confidence 8899999992 34445567889999995331 1110 00 011100000 11223567789998
Q ss_pred EE-eCCcEEEEEEecCCCC
Q 019672 303 IT-YNGYFVEYIFSINNCC 320 (337)
Q Consensus 303 ~~-~dg~~~~~~~~~~~~~ 320 (337)
++ .++.+.+|.++.+.+.
T Consensus 309 a~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EETTTTEEEEEEEETTTTE
T ss_pred EecCCCeEEEEEEeCCCCc
Confidence 88 5789999999988876
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=7.7e-08 Score=87.60 Aligned_cols=231 Identities=14% Similarity=0.168 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCEEEEEcCC-----ceEEEeCCC--CcEEE--EEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 10 VFFVSFNQDNSGFALSTKD-----GFKIFDSST--GRLCY--ERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~-----g~~vw~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
-..++++|++++|.+..+. ++..|.++. +++.. ... ......+.+..+...++.+.- .+++|.
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~v~ 112 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGSVS 112 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCeEE
Confidence 3567889999998877552 366666554 44422 222 244466777777777766653 489999
Q ss_pred EEECCCC-CEEEE---EEc-----------CCceeEEEEcCC--eEEEEE--CCeEEEEECCCCe--e--eeeecCCCCC
Q 019672 79 LFNTTTG-TALRE---LNF-----------LTSILAVRLNKK--RLVIVL--REKTYIYDANTLA--I--LDTIDTVPNL 135 (337)
Q Consensus 79 iwd~~~~-~~~~~---~~~-----------~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~--~--~~~~~~~~~~ 135 (337)
++++... +.... +.+ .....++.++|+ .++++. .+.|.+|++.... + ...+..+. .
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-G 191 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-G 191 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-T
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-C
Confidence 9999874 33222 211 124567888876 455544 5699999996643 2 22333222 1
Q ss_pred ceEEEEeeCCCccEEEEcCCCCccEEEEEEcc--CCcc--ccc-----------CceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHS--HCE-----------APLAAIVLSSNGMYIATASEQGTIIR 200 (337)
Q Consensus 136 ~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~--~~~~--~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~ 200 (337)
.+--.+.++|++.++.+... .+++|.++++. ++.. .+. .....|+++|||++|.++......|-
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 22333445566666655543 58899999887 3321 111 25788999999999888876655578
Q ss_pred EEEcC--CCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCC
Q 019672 201 VFLVS--EATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF 253 (337)
Q Consensus 201 vwd~~--~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~ 253 (337)
+|++. +|++ +..+..+ ......++|+|+|+ +|+++. .+++|.+|+++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~---~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGR---YLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSS---EEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCC---EEEEEecCCCeEEEEEEeC
Confidence 99993 3433 2233221 12257899999999 777776 557899999853
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=105.62 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=70.1
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
+.|+..+|+|||++||+.|.||. +||||..+.+++..++. .-+...||+|||||+ |+++|+.|..|.||.+...
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGK---yIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGK---YIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred ccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEEcCCcc---EEEecCCcceEEEEEeccc
Confidence 67899999999999999999997 69999998877655532 123489999999999 9999999999999999766
Q ss_pred cccCCCCccccccc
Q 019672 255 INQRRGGRTSSILG 268 (337)
Q Consensus 255 ~~~~~~~~~~~~~~ 268 (337)
+-..+.+....|+.
T Consensus 365 RVVARGqGHkSWVs 378 (636)
T KOG2394|consen 365 RVVARGQGHKSWVS 378 (636)
T ss_pred eEEEecccccccee
Confidence 55444333334443
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.22 E-value=2.6e-10 Score=97.56 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=131.2
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeee
Q 019672 51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAIL 126 (337)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~ 126 (337)
.+.+.+.+++++..+ +-++.|=|..+-+...-+..-..|.-|.|..+ +++++. ++.|.+|++...+-.
T Consensus 13 ~c~fSp~g~yiAs~~--------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS--------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred ceeECCCCCeeeeee--------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 456778888888765 34788888776654433333345656666544 333333 789999999888777
Q ss_pred eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeC--------
Q 019672 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASE-------- 194 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~-------- 194 (337)
..++. ++.++.+.+.+|++..+...+. -+-.|.+|.+.+.+..+ +..+..++|+|||++.|-.+.
T Consensus 85 ckIde--g~agls~~~WSPdgrhiL~tse-F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 85 CKIDE--GQAGLSSISWSPDGRHILLTSE-FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred EEecc--CCCcceeeeECCCcceEeeeec-ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 77764 4567888899999966665554 58889999998876542 266789999999999887765
Q ss_pred ---------------------------CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672 195 ---------------------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH 247 (337)
Q Consensus 195 ---------------------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~ 247 (337)
||..+-|||.--.-++..+.++. .+..++|||.++ +|++|+.|+.++
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~q---flavGsyD~~lr 235 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQ---FLAVGSYDQMLR 235 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc---ceeEEEeccccc---eEEeeccchhhh
Confidence 56667788865444444443322 378899999999 999999999998
Q ss_pred EEe
Q 019672 248 VFS 250 (337)
Q Consensus 248 iw~ 250 (337)
|.+
T Consensus 236 vln 238 (447)
T KOG4497|consen 236 VLN 238 (447)
T ss_pred hhc
Confidence 865
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.1e-08 Score=96.22 Aligned_cols=173 Identities=16% Similarity=0.032 Sum_probs=107.9
Q ss_pred CceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
..+|.+||........-..+...+....|++++ ++.+. ...|++||+.+++... +..... ...+..++|++
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG 259 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDG 259 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCC
Confidence 457999998654433333445578888888765 44333 2369999998775432 221111 12345667778
Q ss_pred cEEEEcCC-CCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCC-Cc-EEEEEEcCCCceeEeeccCCcce
Q 019672 148 CFLAVPAS-TTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 148 ~~la~~~~-~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~d-g~-~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
..+++... .....|.+||+.++..... ......+|+|||++|+.++.. |. .|.++|+.+++.. .+... ..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~--g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ--GN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC--CC
Confidence 77765422 1234699999987654321 345678999999999988753 33 2456677766542 23211 12
Q ss_pred eEEEEEeecCCCcccEEEEEeCCC---cEEEEecCCCc
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI 255 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~~~ 255 (337)
.....+|||||+ +|+..+.++ .|.+||+.++.
T Consensus 337 ~~~~~~~SpDG~---~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 337 YNARASVSPDGK---KIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CccCEEECCCCC---EEEEEECCCCceeEEEEECCCCC
Confidence 234689999999 888765443 58999986654
No 233
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=8.6e-09 Score=95.11 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=142.1
Q ss_pred CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (337)
Q Consensus 19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 97 (337)
+..+.+++.++ +..+|.++|+++......+..........+.+ ++.. .++.|..||.++|+.+-+.....+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v-~v~~------~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLV-VVRT------NDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEE-EEEC------CCCeEEEEEcCCCceeeEEccCCCc
Confidence 44555665554 57778777877765543221111111122333 3333 3789999999999988776554332
Q ss_pred eE------EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC--Cc---eEEEEeeCC--CccEEEEcCCCCccEEEE
Q 019672 98 LA------VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPN--LK---GLCAFSPSL--NACFLAVPASTTKGSVLV 163 (337)
Q Consensus 98 ~~------i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~--~~---~~~~~~~~~--~~~~la~~~~~~dg~v~i 163 (337)
.. .....+.+++.. ++.+..+|+.+++.+.+...... .. .+..+...| .+..+.+.+ .+|.+..
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~--~~g~l~a 255 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS--YQGRVAA 255 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE--cCCEEEE
Confidence 11 112334444444 68999999999987655432110 00 000010001 122444444 4789999
Q ss_pred EEccCCcccccCceEE-EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeC
Q 019672 164 YNVMELHSHCEAPLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS 242 (337)
Q Consensus 164 ~d~~~~~~~~~~~i~~-~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~ 242 (337)
||..+++.....+... .....++..+..++.||. +..+|..+|+.+.+..... .....+... .+. .|.+++.
T Consensus 256 ~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~---~l~~~~~ 328 (377)
T TIGR03300 256 LDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGV-VVALDRRSGSELWKNDELK-YRQLTAPAV--VGG---YLVVGDF 328 (377)
T ss_pred EECCCCcEEEeeccCCccCceEeCCEEEEECCCCe-EEEEECCCCcEEEcccccc-CCccccCEE--ECC---EEEEEeC
Confidence 9999887654311111 111124667888888997 5799999999876653211 111122222 345 7899999
Q ss_pred CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672 243 SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY 312 (337)
Q Consensus 243 dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~ 312 (337)
+|.|+++|.++++..-+ +. ++. ..++.. |.- -++.|++++.||+++.|
T Consensus 329 ~G~l~~~d~~tG~~~~~------~~---~~~--~~~~~s----------p~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 329 EGYLHWLSREDGSFVAR------LK---TDG--SGIASP----------PVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEECCCCCEEEE------EE---cCC--CccccC----------CEE-ECCEEEEEeCCceEEEe
Confidence 99999999876654211 00 000 001111 111 12679999999999887
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.2e-08 Score=96.01 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=132.0
Q ss_pred eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (337)
Q Consensus 30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (337)
+.++|.+..... .......+....+.++++.+++++.. ..+..|.+||+.+++......+...+....|++++
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~----~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYA----NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEec----CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 567787655432 22233456667788888888888742 12578999999988765433455567778888765
Q ss_pred EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEccCCcccc----cCce
Q 019672 107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSHC----EAPL 177 (337)
Q Consensus 107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~~----~~~i 177 (337)
+++.. ++ .|++||+.+++.. .+..... ......++|++..+++.+.. ....|.++|+..+.... ...+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 33333 33 5888899877543 3332222 22334566778787766531 12368888876654321 2456
Q ss_pred EEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC------cEEEE
Q 019672 178 AAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG------SLHVF 249 (337)
Q Consensus 178 ~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg------~v~iw 249 (337)
....|+|||++||..+.++ ..|.+||+.++.. ..+..+ ..+.++.|+|||+ +|+..+.++ .+.++
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~~~~~p~~spDG~---~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---FLVEGPTWAPNGR---VIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---CCCCCCeECCCCC---EEEEEEccCCCCCcceEEEE
Confidence 7789999999999877543 2357888765543 334322 2356789999999 777655432 46777
Q ss_pred ecCCC
Q 019672 250 SPGFA 254 (337)
Q Consensus 250 ~l~~~ 254 (337)
|+...
T Consensus 410 dl~g~ 414 (435)
T PRK05137 410 DLTGR 414 (435)
T ss_pred ECCCC
Confidence 77543
No 235
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2.4e-10 Score=103.92 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=124.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc----------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCC
Q 019672 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71 (337)
Q Consensus 3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 71 (337)
+-+|.+||.|+...+.+..+.+|+-|| ++.|++.... +.-.+.++.-.+..+.+++..-.+++.
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc----- 414 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC----- 414 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee-----
Confidence 347899999999999999999998887 6999654221 111122222233233344322223332
Q ss_pred CCCceEEEEECCCCCEEEEEEc---CCceeEEEEcCCeEEE-EECCeEEEEECCCCee---eeeecCC--CCC---ceEE
Q 019672 72 LSPRRLCLFNTTTGTALRELNF---LTSILAVRLNKKRLVI-VLREKTYIYDANTLAI---LDTIDTV--PNL---KGLC 139 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~~~v-~~d~~i~i~d~~~~~~---~~~~~~~--~~~---~~~~ 139 (337)
++|++|++|+.....+ +++.. +.-.+.+.+....... ..+.....+++.+.+. +..+... +.+ ..+.
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 2599999999877665 33322 1233445554333222 2244444444433322 2222111 111 1122
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
-+-.+|...+.+++. +|+.|+++|..++...|. ..++++++.|+|-+|++++.||. +++|.+....++.+.
T Consensus 494 ~vVs~~~~~~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es 569 (577)
T KOG0642|consen 494 KVVSHPTADITFTAH--EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES 569 (577)
T ss_pred eEEecCCCCeeEecc--cCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence 333455666777665 799999999999887654 78999999999999999999998 699999877665544
No 236
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.8e-09 Score=94.32 Aligned_cols=236 Identities=11% Similarity=0.041 Sum_probs=153.1
Q ss_pred EEccCCCEEEEEeCCCCCCCCCceEEEEECC------CCCEEEEEEcC--CceeEEEEcC-CeEEEEE--CCeEEEEECC
Q 019672 53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT------TGTALRELNFL--TSILAVRLNK-KRLVIVL--REKTYIYDAN 121 (337)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~------~~~~~~~~~~~--~~v~~i~~~~-~~~~v~~--d~~i~i~d~~ 121 (337)
++.|+.|...+++|| .|..+++|++. +.+++....++ +.|.++.|+. +..+..+ +++|...|+.
T Consensus 61 AlqFS~N~~~L~SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred eeeeccCCeEEeecC-----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 456666677777776 69999999974 44666655544 5899999964 4454444 7899999999
Q ss_pred CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc----c----cCceEEEEeCCC-CCEEEEE
Q 019672 122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----C----EAPLAAIVLSSN-GMYIATA 192 (337)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~----~~~i~~~~~s~d-g~~lat~ 192 (337)
+.+.+..+....+...++.++.+|....+++.. .+|.|.+||.+..... . ......+-|+|. -.+|+++
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t--~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT--RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEe--cCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 988877775555556778888888777888776 5899999999865421 1 155778889995 4578888
Q ss_pred eCCCcEEEEEEcCCCceeEeeccCCc------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccc
Q 019672 193 SEQGTIIRVFLVSEATKSYSFRRGTY------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI 266 (337)
Q Consensus 193 s~dg~~i~vwd~~~~~~~~~~~~~~~------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~ 266 (337)
++.|. +.|||.+..+.. .++++.. ..+-.++.|+|.|. .|.+--....--+||+-.+..+.-+
T Consensus 214 ~~~~G-~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~G~---Q~msiRR~~~P~~~D~~S~R~~V~k------ 282 (609)
T KOG4227|consen 214 SETGG-PNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPSGN---QFMSIRRGKCPLYFDFISQRCFVLK------ 282 (609)
T ss_pred cccCC-CCceeeccccch-HHhhhccccCcccchhhhheeeCCCCC---eehhhhccCCCEEeeeecccceeEe------
Confidence 88887 489999765431 1111111 11245788999998 6665544444456676544332210
Q ss_pred cccccc-ccce--eecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 267 LGSILP-ESVN--EVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 267 ~~~~~~-~~~~--~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
...-| .++. .+-+.++ .+...+++|+.+=-+++|.+....
T Consensus 283 -~D~N~~GY~N~~T~KS~~F-----------~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 283 -SDHNPNGYCNIKTIKSMTF-----------IDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred -ccCCCCcceeeeeeeeeee-----------ecceeeeccCcccceEEEecCCCc
Confidence 00001 1111 1111111 223568999999999999995543
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.4e-08 Score=95.47 Aligned_cols=214 Identities=10% Similarity=0.007 Sum_probs=129.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC----CceEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTK----DGFKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~----~g~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.+..++.+.+|+|||+.|+..+. ..+.+||+.+++... ....+......+.+++..+++.... .....|.+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~ 274 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ----GGNTDIYT 274 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec----CCCceEEE
Confidence 45678999999999999886643 236899998886432 2122333445677777777766531 01346888
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEEC----CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 153 (337)
||+.+++...............|++++ +++..+ ..|+++|+.+++.. .+.... .......++|++..+++.
T Consensus 275 ~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~--~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 275 MDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG--GRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC--CcccCeEECCCCCEEEEE
Confidence 899887654332233345567787764 554443 26889998766443 332211 123334566788888876
Q ss_pred CCC-CccEEEEEEccCCccc---ccCceEEEEeCCCCCEEEEEeCCC-----cEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672 154 AST-TKGSVLVYNVMELHSH---CEAPLAAIVLSSNGMYIATASEQG-----TIIRVFLVSEATKSYSFRRGTYPSTIFS 224 (337)
Q Consensus 154 ~~~-~dg~v~i~d~~~~~~~---~~~~i~~~~~s~dg~~lat~s~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 224 (337)
... ....|.+||+...... ....+....|+|||+.|+..+.++ ..+.++|+..+.. ..+.. ...+..
T Consensus 352 ~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~ 427 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASD 427 (435)
T ss_pred EcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccC
Confidence 531 1246888897544321 113467889999999988766542 2356778765543 34421 223555
Q ss_pred EEeec
Q 019672 225 LSFGQ 229 (337)
Q Consensus 225 l~fs~ 229 (337)
.+|||
T Consensus 428 p~Wsp 432 (435)
T PRK05137 428 PAWSP 432 (435)
T ss_pred cccCC
Confidence 67775
No 238
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.15 E-value=1.2e-08 Score=87.13 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=147.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCC---cEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTG---RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
..++|+|-+|++|++.+|++.++ .+.||..... +..++... ..+..+++.+.+|.+..++. |+.-.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-------drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-------DRNAYV 81 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-------CCCccc
Confidence 35799999999999999999887 5789876554 34454433 44566777777777766654 899999
Q ss_pred EEC-CCCCE---EEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeee---eeecCCCCCceEEEEeeCCCccE
Q 019672 80 FNT-TTGTA---LRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACF 149 (337)
Q Consensus 80 wd~-~~~~~---~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 149 (337)
|.. ..++- +..+.++..+++|.|+|+ .+++.+ ...|.||-++...-- +.+.. +....+.+++++|++.+
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk-PirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK-PIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC-ccccceeeeeccCCcce
Confidence 988 44432 233467788999999875 455544 457777766543211 11211 22235778899999988
Q ss_pred EEEcCCCCccEEEEEEcc-----CC-------------ccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 150 LAVPASTTKGSVLVYNVM-----EL-------------HSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 150 la~~~~~~dg~v~i~d~~-----~~-------------~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
+|.++ .|+..+|+..- .. ... ..+.|..+.|+|+|..||-.+-|++ +.+-|...
T Consensus 161 laaGs--~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~ 237 (361)
T KOG1523|consen 161 LAAGS--TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAG 237 (361)
T ss_pred ecccc--cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCC
Confidence 88877 59999998642 10 000 1177999999999999999999998 57878765
Q ss_pred Cc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672 207 AT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 207 ~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d 243 (337)
.. .+...... .-+..++.|-.+.. ++.++.|
T Consensus 238 p~~~v~~~~~~--~lP~ls~~~ise~~----vv~ag~~ 269 (361)
T KOG1523|consen 238 PSERVQSVATA--QLPLLSVSWISENS----VVAAGYD 269 (361)
T ss_pred Cchhccchhhc--cCCceeeEeecCCc----eeecCCC
Confidence 54 34443322 13466677765543 4444455
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=6.2e-08 Score=89.42 Aligned_cols=262 Identities=14% Similarity=0.110 Sum_probs=153.0
Q ss_pred CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (337)
Q Consensus 19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 97 (337)
+..+.+++.++ +..+|..+|+++...+.............+.+ +++. .++.|..+|.++|+.+.+......+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v-~v~~------~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLV-FVGT------EKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEE-EEEc------CCCEEEEEECCCCcEeeeeccCcee
Confidence 45666666655 68899999998877654332111122233333 3443 3789999999999998877665544
Q ss_pred eE-EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE---EEEeeCCCccEEEEcCCCCccEEEEEEccCCccc
Q 019672 98 LA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH 172 (337)
Q Consensus 98 ~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~ 172 (337)
.+ .....+.+++.. ++.++.+|.++++.+.++......... ...... ++ .++++. .+|.+..+|+.+++..
T Consensus 138 ~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~--~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF--AGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC--CCCEEEEEEccCCCEe
Confidence 32 123445555554 789999999999887776543221110 000111 12 344444 3788999999888754
Q ss_pred ccCce------------EEEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEE
Q 019672 173 CEAPL------------AAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV 238 (337)
Q Consensus 173 ~~~~i------------~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~la 238 (337)
.+..+ ..+.-+| .+..+..++.+|. ++.||.++|+.+.+..... ..... .++. .+.
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~---~vy 283 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDASS----YQGPA--VDDN---RLY 283 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccCC----ccCce--EeCC---EEE
Confidence 32110 0111112 3457777888887 5899999999887664221 11222 2344 688
Q ss_pred EEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 239 ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 239 s~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
+++.+|.|+.+|..+++..-+ + ..++.. .++. | -..++.|++++.||.++.++ .++
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~------~--~~~~~~---~~ss----------p-~i~g~~l~~~~~~G~l~~~d--~~t 339 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWK------N--DELKYR---QLTA----------P-AVVGGYLVVGDFEGYLHWLS--RED 339 (377)
T ss_pred EECCCCeEEEEECCCCcEEEc------c--ccccCC---cccc----------C-EEECCEEEEEeCCCEEEEEE--CCC
Confidence 888999999999876643210 0 000000 0000 0 01236899999999888775 455
Q ss_pred CCeeceEE
Q 019672 319 CCESTWTL 326 (337)
Q Consensus 319 ~~~~~~~~ 326 (337)
++. .|.+
T Consensus 340 G~~-~~~~ 346 (377)
T TIGR03300 340 GSF-VARL 346 (377)
T ss_pred CCE-EEEE
Confidence 553 4444
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5.9e-08 Score=90.95 Aligned_cols=207 Identities=15% Similarity=0.081 Sum_probs=122.6
Q ss_pred eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (337)
Q Consensus 30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (337)
+.++|.+..... .......+....+.++++.+++++.. .....|.+||+.+++......+...+....|+|++
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~----~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE----SKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc----CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 456666543221 11222344455677888888887742 12357999999998765444455566678888875
Q ss_pred EEEEE--CCe--EEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEc--cCCccc--c--cCc
Q 019672 107 LVIVL--REK--TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV--MELHSH--C--EAP 176 (337)
Q Consensus 107 ~~v~~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~--~~~~~~--~--~~~ 176 (337)
+++.. ++. |+++|+..+. ...+..+.. ......++||+..+++.+. .+|...||.+ .++... . ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~-~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSD-RGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEec-CCCCcEEEEEECCCCceEEEecCCCC
Confidence 44333 454 5555665544 333432221 1223456778888876653 3456666654 333221 1 123
Q ss_pred eEEEEeCCCCCEEEEEeCCCc--EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC-c--EEEEec
Q 019672 177 LAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-S--LHVFSP 251 (337)
Q Consensus 177 i~~~~~s~dg~~lat~s~dg~--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~--v~iw~l 251 (337)
....+|||||++||..+.++. .|.+||+.+++.. .+..+ .......|+|||+ +|+.++.++ . +++.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~---~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT---TRDESPSFAPNGR---YILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC---CCccCceECCCCC---EEEEEEecCCCEEEEEEEC
Confidence 446789999999998876642 3689999888653 33322 1235679999999 777776554 3 444444
No 241
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.11 E-value=3.3e-10 Score=107.24 Aligned_cols=228 Identities=11% Similarity=0.077 Sum_probs=148.5
Q ss_pred EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeee
Q 019672 53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDT 128 (337)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~ 128 (337)
+..++..+..++.| +.|.-|+||..+++.++.....+ +.|++++.+.+.+.++. |.-|++|.++++.++..
T Consensus 195 ca~fDrtg~~Iitg-----sdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv 269 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITG-----SDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV 269 (1113)
T ss_pred eeeeccccceEeec-----CccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH
Confidence 33444444334444 46999999999999999887655 48999999877766654 66799999999999988
Q ss_pred ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc-CCc-cc-------cc-------------------------
Q 019672 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELH-SH-------CE------------------------- 174 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~-~~~-~~-------~~------------------------- 174 (337)
+..+.+ .+.+++++|.. +.+ .||++++||.+ ... .. ..
T Consensus 270 Lrghtg--avtaiafsP~~----sss--~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 270 LRGHTG--AVTAIAFSPRA----SSS--DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred Hhcccc--ceeeeccCccc----cCC--CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 876654 57777777643 333 59999999987 110 00 00
Q ss_pred -CceEEEEeCCCCCEEEEEeCCCc----------EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672 175 -APLAAIVLSSNGMYIATASEQGT----------IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 175 -~~i~~~~~s~dg~~lat~s~dg~----------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d 243 (337)
..+.++++..++-.+++.+.|-. .+.+|++.+|++++.+.. +...++.|.|+|-+. -...+++.|
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~--ri~msag~d 417 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNP--RIAMSAGYD 417 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCc--HhhhhccCC
Confidence 22334444444444444443321 246888888887776642 345688899998776 266788999
Q ss_pred CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 244 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 244 g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
|...|||+-.+...+. |. .++ ..+ ....|.+++..++..-.-|.++|+..-..+
T Consensus 418 gst~iwdi~eg~pik~------y~---~gh--~kl----------~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKH------YF---IGH--GKL----------VDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CceEeeecccCCccee------ee---ccc--cee----------eccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999999977665431 11 111 001 111235556777777778888888764333
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=6e-09 Score=101.10 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=134.4
Q ss_pred EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce-----eEEEEcCCeEEEEE---CCeEEEEECCCCee
Q 019672 54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI-----LAVRLNKKRLVIVL---REKTYIYDANTLAI 125 (337)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-----~~i~~~~~~~~v~~---d~~i~i~d~~~~~~ 125 (337)
+.+....+++... ++.+-+||...+....++...+.. .-+-.+++.+.++. -+.|.+|+....+.
T Consensus 95 l~~e~k~i~l~~~-------~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 95 LFEENKKIALVTS-------RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred hhhhcceEEEEEc-------CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344455566654 899999999988877777665532 12234566666654 68999999863322
Q ss_pred eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEE
Q 019672 126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTII 199 (337)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i 199 (337)
-..+..| ...+..+..+-++.++++.+ +|.++++|++.+.+.. |.+.|..++|.|+ +|+|+++|-+ .
T Consensus 168 p~~l~GH--eG~iF~i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-c 240 (967)
T KOG0974|consen 168 PIRLKGH--EGSIFSIVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-C 240 (967)
T ss_pred cceeccc--CCceEEEEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-E
Confidence 2223333 34567778878899999998 6999999999988764 4588999999999 9999999987 5
Q ss_pred EEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 200 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 200 ~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
|+|+.. ++.+.+++ +|....|..++..++.. .+.+++.|+++++|++...
T Consensus 241 rvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEecc-cceehhhh-hhhhcceeEEEEcCCce---EEEeeccCcchhhhhhhcc
Confidence 999764 45555554 33344599999999888 9999999999999998654
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=7.9e-08 Score=90.10 Aligned_cols=182 Identities=18% Similarity=0.082 Sum_probs=108.8
Q ss_pred CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCC
Q 019672 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTV 132 (337)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~ 132 (337)
..+++++.. .....|.+||...............+....|+|++ ++... + ..|++||+.+++... +...
T Consensus 164 ~~iayv~~~----~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~ 238 (427)
T PRK02889 164 TRIAYVIKT----GNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF 238 (427)
T ss_pred cEEEEEEcc----CCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC
Confidence 446666532 12457888887543333333455678888998875 33333 2 369999998886543 2211
Q ss_pred CCCceEEEEeeCCCccEEEEcCCCCccEEEEE--EccCCccc--c--cCceEEEEeCCCCCEEEEEeCC-CcEEEEEEc-
Q 019672 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVY--NVMELHSH--C--EAPLAAIVLSSNGMYIATASEQ-GTIIRVFLV- 204 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~--d~~~~~~~--~--~~~i~~~~~s~dg~~lat~s~d-g~~i~vwd~- 204 (337)
. ....+..++|++..+++... .+|...|| |+..+... . ........|+|||++|+..+.. |. ..||.+
T Consensus 239 ~--g~~~~~~~SPDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~ 314 (427)
T PRK02889 239 K--GSNSAPAWSPDGRTLAVALS-RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMP 314 (427)
T ss_pred C--CCccceEECCCCCEEEEEEc-cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEE
Confidence 1 12335567788878876433 36665555 55443321 1 1345678999999998877754 44 356654
Q ss_pred -CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC---cEEEEecCCCc
Q 019672 205 -SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI 255 (337)
Q Consensus 205 -~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~~~ 255 (337)
.+++. ..+... .......+|||||+ +|+..+.++ .|.+||+..+.
T Consensus 315 ~~~g~~-~~lt~~--g~~~~~~~~SpDG~---~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 315 ASGGAA-QRVTFT--GSYNTSPRISPDGK---LLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCCce-EEEecC--CCCcCceEECCCCC---EEEEEEccCCcEEEEEEECCCCC
Confidence 44443 222111 11234578999999 888877664 59999987654
No 244
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=7.4e-09 Score=94.18 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=112.8
Q ss_pred cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEee--CCCccEEEEcCCCCccEEEEEEcc
Q 019672 93 FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSP--SLNACFLAVPASTTKGSVLVYNVM 167 (337)
Q Consensus 93 ~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~dg~v~i~d~~ 167 (337)
|.+-|.++.|+.++.++++ |-.+.|||.-..++++.+.+ .+...+.+..+ ...+..++++. .|..|+++|+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgA--gDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGA--GDKLIKLFDLD 125 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEecc--CcceEEEEecc
Confidence 3457899999988766655 45899999988889999976 34556665554 33455666665 59999999998
Q ss_pred CCccc---------------ccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEcCCCce-------eEeec-cCCcceeEE
Q 019672 168 ELHSH---------------CEAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATK-------SYSFR-RGTYPSTIF 223 (337)
Q Consensus 168 ~~~~~---------------~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~~~~~~-------~~~~~-~~~~~~~i~ 223 (337)
..+.. |+..|..++--|++ +.+-++++||+ ||-+|++.... ...+. .....-...
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhchhhheee
Confidence 64321 23678889999998 78999999998 69999986431 11110 000112478
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
|+..||... .+||+|+.|-.+++||.+.
T Consensus 205 ~ltisp~rp--~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 205 CLTISPSRP--YYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeecCCCC--ceEEecCCCchhhhhhhhh
Confidence 999999988 4999999999999999643
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.04 E-value=1.3e-07 Score=88.32 Aligned_cols=172 Identities=15% Similarity=0.049 Sum_probs=107.9
Q ss_pred CceEEEEECCCCCEEEEEEcCCceeEEEEcCCeE--EEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
...|.++|...+....-......+....|++++- +.+. + ..|++||+.+++...... ... ...+..++|++
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~--~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG--MNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC--CccceEECCCC
Confidence 4578888886544333333444677788887653 3333 2 479999998875433222 221 22345566777
Q ss_pred cEEEEcCC-CCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCCC-c-EEEEEEcCCCceeEeeccCCcce
Q 019672 148 CFLAVPAS-TTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 148 ~~la~~~~-~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~dg-~-~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
..+++... .....|.+||+.++.... .......+|+|||++|+..+..+ . .|.++|+.+++.. .+... ..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~~ 322 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--GG 322 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CC
Confidence 77765432 123468889987664321 13345778999999988776543 2 2567888776643 33221 23
Q ss_pred eEEEEEeecCCCcccEEEEEeCCC---cEEEEecCCC
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFA 254 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~~ 254 (337)
.+..++|+|||+ +|+.++.++ .|.+||+...
T Consensus 323 ~~~~~~~spdg~---~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 323 YNASPSWSPDGD---LIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CccCeEECCCCC---EEEEEEccCCceEEEEEeCCCC
Confidence 356789999999 888888776 7888888653
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=2.9e-08 Score=90.88 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=131.2
Q ss_pred ceEEEEECCCCCEEEEEEcC-CceeEEEEcCC-eEEEEE--CCeEEEEECCCCeeeeeecCCC---------CCceEEEE
Q 019672 75 RRLCLFNTTTGTALRELNFL-TSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVP---------NLKGLCAF 141 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~ 141 (337)
..|.=.|++.|+-+.-+... ..+..+.+++- ++++++ ++.+..||.+....+..+.... +...+.++
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 57777899999988877766 47888888764 344444 8899999998876655553221 12337889
Q ss_pred eeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 215 (337)
Q Consensus 142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~ 215 (337)
+++.++..++++. .+|.|.|||+++.+... ..||..+.|.+.+..=...|.|..++||||-.+|+....+..
T Consensus 235 ~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 235 KFRDDGLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred EecCCceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence 9988899999887 48999999999887642 288999999886443333445666789999999998776642
Q ss_pred CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
...++.+++-|++. +++++-.++.++.|=+..-.+
T Consensus 313 ---t~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 313 ---TSDLNDFCFVPGSG---MFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ---cCCcCceeeecCCc---eEEEecCCCcceeEEccccCC
Confidence 34588999999998 999999999999988765443
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=2.3e-07 Score=86.82 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=125.6
Q ss_pred eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (337)
Q Consensus 30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (337)
+.++|.+..... .......+....+.++++.++++.... ....|.+||+.+++......+...+.+..|++++
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 456676544322 111112344456777778888776421 2368999999998765544555566678888764
Q ss_pred EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEccCCccc----ccCce
Q 019672 107 LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSH----CEAPL 177 (337)
Q Consensus 107 ~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~----~~~~i 177 (337)
+++.. + ..|++||+.+++... +...... .....+++++..+++.+.. ....|.++|+.+++.. ....+
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~--~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGI--DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE-CCCCCCC--CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 44443 2 369999998775432 3222211 1223455677777765421 1236777888765432 12556
Q ss_pred EEEEeCCCCCEEEEEeCCC---cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc---EEEEec
Q 019672 178 AAIVLSSNGMYIATASEQG---TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFSP 251 (337)
Q Consensus 178 ~~~~~s~dg~~lat~s~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~---v~iw~l 251 (337)
...+|+|||++|+.++.++ . |.+||+.++... .+... ......+|+|||+ +|+..+.++. +.+.+.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~---~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGR---MILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCC---EEEEEEeCCCcEEEEEEEC
Confidence 7889999999999988775 4 578998876542 23221 1234568999999 7877777653 445443
No 248
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.03 E-value=7.9e-09 Score=88.24 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=110.2
Q ss_pred eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc---cc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-C
Q 019672 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---SH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-A 207 (337)
Q Consensus 137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~---~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~ 207 (337)
.+.+.++++|+..+|.+- ...+|.||...... .. |...|+.|+|+|..+.|++++.|... +||...+ +
T Consensus 12 pitchAwn~drt~iAv~~--~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna-yVw~~~~~~ 88 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSP--NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA-YVWTQPSGG 88 (361)
T ss_pred ceeeeeecCCCceEEecc--CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc-cccccCCCC
Confidence 467788889999999876 47899999887655 22 34889999999999999999999885 7999844 4
Q ss_pred ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc-----ceeecccc
Q 019672 208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES-----VNEVLDPA 282 (337)
Q Consensus 208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~w~~~ 282 (337)
+-..++..-......++|.|+|.++ .+|+||.-..|.||-++.+.+ .++.+.+.+. ....|.+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENd--------WWVsKhikkPirStv~sldWhp- 156 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQEND--------WWVSKHIKKPIRSTVTSLDWHP- 156 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccc--------eehhhhhCCccccceeeeeccC-
Confidence 3222211111234578999999998 999999999999999876653 2233322221 2234444
Q ss_pred cceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 283 DHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
.+-.|.+|+.||+.++|....
T Consensus 157 -------------nnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 157 -------------NNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred -------------CcceecccccCcceeEEEEee
Confidence 446788999999999998743
No 249
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=6.4e-07 Score=92.29 Aligned_cols=231 Identities=13% Similarity=0.073 Sum_probs=138.0
Q ss_pred EEEEEcCC-CCEEEEEcCC-ceEEEeCCCCcEEEEEee-C---------------CEEEEEEccCCCEEEEEeCCCCCCC
Q 019672 11 FFVSFNQD-NSGFALSTKD-GFKIFDSSTGRLCYERAV-G---------------AFSIVEMLYSSSLLAIVGAGEQPSL 72 (337)
Q Consensus 11 ~~~~fs~d-g~~la~g~~~-g~~vw~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~g~~~~~ 72 (337)
..++++++ |..+++-+.+ .+++||.+.. .+..... + .-..+.+..+.+.+.++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------ 643 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------ 643 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------
Confidence 35788875 4455554444 4789997644 3322211 0 0112233333444444333
Q ss_pred CCceEEEEECCCCCEEEEEEcC------------------CceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeec
Q 019672 73 SPRRLCLFNTTTGTALRELNFL------------------TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTID 130 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~------------------~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~ 130 (337)
..+.|+.+|+.++. +.++... ....++++++ ..++++. ++.|++||..++... .+.
T Consensus 644 ~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 644 ENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 35789999987764 3333110 1235678876 3455554 578999998776432 111
Q ss_pred CCC-------------CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------------------------
Q 019672 131 TVP-------------NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------------------------ 173 (337)
Q Consensus 131 ~~~-------------~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------------------------ 173 (337)
... .......++.++++..|.++.. .++.|++||+.++....
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 100 0011223555666665555554 57899999987643110
Q ss_pred --cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-----------cceeEEEEEeecCCCcccEEEEE
Q 019672 174 --EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 174 --~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~l~fs~dg~~~~~las~ 240 (337)
-.....++++++|+.+++-+.+++ |++||..++........+. .-.....|+++++|+ ++++-
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---LFVAD 876 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC---EEEEE
Confidence 012468999999998888877776 7999998876543221110 011367899999999 89999
Q ss_pred eCCCcEEEEecCCCc
Q 019672 241 SSSGSLHVFSPGFAI 255 (337)
Q Consensus 241 s~dg~v~iw~l~~~~ 255 (337)
+.+++|++||+.+..
T Consensus 877 t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 877 TNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCEEEEEECCCCc
Confidence 999999999997754
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=7e-08 Score=90.91 Aligned_cols=213 Identities=10% Similarity=0.046 Sum_probs=124.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-Cc---eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~-~g---~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
...++.+..|+|||+.|+..+. ++ +.+||+.+++...-.. .+......+.++++.++++.... ....|.+|
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~ 291 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----GQPEIYVV 291 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----CCeEEEEE
Confidence 3456788999999999886543 32 5788988876432211 12223356777888887765420 12358888
Q ss_pred ECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
|+.+++...............|++++ +++.. + ..|+++|+.+++... +..... .....+++|++.++++.+
T Consensus 292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~--~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE--QNLGGSITPDGRSMIMVN 368 (448)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC--CCcCeeECCCCCEEEEEE
Confidence 99887654333333345567787764 44444 2 268888887775433 211111 112234566777887765
Q ss_pred CCCcc--EEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCC-c-EEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 155 STTKG--SVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 155 ~~~dg--~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg-~-~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
. .++ .|.++|+.++.... . .......|+|||+.|+..+.++ . .+.+++. +|.....+..+ ...+...+|
T Consensus 369 ~-~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~~~p~W 444 (448)
T PRK04792 369 R-TNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEVKSPAW 444 (448)
T ss_pred e-cCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCcCCCcc
Confidence 3 244 45567877664321 1 1223457999999988776543 2 2566776 56555555322 234666788
Q ss_pred ec
Q 019672 228 GQ 229 (337)
Q Consensus 228 s~ 229 (337)
||
T Consensus 445 sp 446 (448)
T PRK04792 445 SP 446 (448)
T ss_pred CC
Confidence 76
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.5e-07 Score=88.37 Aligned_cols=214 Identities=14% Similarity=0.062 Sum_probs=125.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC-c---eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKD-G---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~-g---~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.+..++.+.+|+|||+.|+..+.. + +.+||+++++...-.. .+......+.++++.+++.... ..+..|.+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~----~g~~~Iy~ 271 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSK----DGNPEIYV 271 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEcc----CCCceEEE
Confidence 345678899999999998765432 2 5788998885432211 1222335677777777765532 01347899
Q ss_pred EECCCCCEEEEEEcCCceeEEEEcCC--eEEEEEC----CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672 80 FNTTTGTALRELNFLTSILAVRLNKK--RLVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 153 (337)
||+.+++...-...........|+++ .++...+ ..|+++|+.+++... +..... ......++|++..+++.
T Consensus 272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~--~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGN--YNARPRLSADGKTLVMV 348 (430)
T ss_pred EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC--CccceEECCCCCEEEEE
Confidence 99998875432223334455677765 4555442 268888987775432 221111 11223455677788776
Q ss_pred CCCCcc--EEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672 154 ASTTKG--SVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLS 226 (337)
Q Consensus 154 ~~~~dg--~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~ 226 (337)
.. .++ .|.++|+.++.... . .......|+|||+.|+.++.++ ..+.++++. |.....+.. ....+...+
T Consensus 349 ~~-~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~~~~p~ 424 (430)
T PRK00178 349 HR-QDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGEVREPS 424 (430)
T ss_pred Ec-cCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCCcCCCc
Confidence 53 233 57888988764321 1 2233568999999998877653 224566774 443334432 223456667
Q ss_pred eec
Q 019672 227 FGQ 229 (337)
Q Consensus 227 fs~ 229 (337)
|||
T Consensus 425 ws~ 427 (430)
T PRK00178 425 WSP 427 (430)
T ss_pred cCC
Confidence 776
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=1.9e-06 Score=77.59 Aligned_cols=250 Identities=11% Similarity=0.067 Sum_probs=142.8
Q ss_pred CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCC-CC--CCCCCceEEEEECCCCCEEEEEEcCCce-------
Q 019672 28 DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAG-EQ--PSLSPRRLCLFNTTTGTALRELNFLTSI------- 97 (337)
Q Consensus 28 ~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~d~~v~iwd~~~~~~~~~~~~~~~v------- 97 (337)
+.+.|.|.++++.+-....+......+.++...+.++... .+ .+-.+..|.+||..+.+.+.++..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 4578999999988776654332222367777766655540 00 0114789999999999999998865432
Q ss_pred -eEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC-C-
Q 019672 98 -LAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME-L- 169 (337)
Q Consensus 98 -~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~-~- 169 (337)
..+.++++ .++++. ++.+.+.|+.+++.+.++..+. +..++. .+++..+ +.+. ||......+.+ +
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~--t~e~~~~-~~~~---Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP--TANDTFF-MHCR---DGSLAKVGYGTKGN 179 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE--ecCCccE-EEee---cCceEEEEecCCCc
Confidence 25566655 456555 6799999999999999998743 222322 2122222 2221 23332221111 0
Q ss_pred ------c-------ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCC-----CceeEeeccC-----CcceeEEEE
Q 019672 170 ------H-------SHCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE-----ATKSYSFRRG-----TYPSTIFSL 225 (337)
Q Consensus 170 ------~-------~~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~-----~~~~~~~~~~-----~~~~~i~~l 225 (337)
. .+...| .|.+ ||+++....+ |+ |.+.|+.. .+.+..+..+ -.+..+.-+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 0 011123 4455 8888877776 87 58999533 3333222111 112224449
Q ss_pred EeecCCCcccEEEEEeC----------CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672 226 SFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295 (337)
Q Consensus 226 ~fs~dg~~~~~las~s~----------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 295 (337)
+++||++ .|.+... .+.|.++|+++.+...+ ++- -...|.. ...+
T Consensus 254 a~~~dg~---~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-----------i~v-G~~~~~i----------avS~ 308 (352)
T TIGR02658 254 AYHRARD---RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-----------IEL-GHEIDSI----------NVSQ 308 (352)
T ss_pred EEcCCCC---EEEEEecCCccccccCCCCEEEEEECCCCeEEEE-----------EeC-CCceeeE----------EECC
Confidence 9999998 7776432 14688888876654221 000 0113333 2356
Q ss_pred ccC-EEEEEE-eCCcEEEEEEe
Q 019672 296 KRA-SVSVIT-YNGYFVEYIFS 315 (337)
Q Consensus 296 ~~~-~l~~~~-~dg~~~~~~~~ 315 (337)
+++ .|++.+ .+|.+.+++..
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECc
Confidence 667 777777 57888877653
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.1e-06 Score=82.58 Aligned_cols=171 Identities=14% Similarity=0.027 Sum_probs=105.6
Q ss_pred eEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672 76 RLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF 149 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (337)
.|.++|...+....-......+....|+|++ ++... + ..|.+||+.+++... +..... ...+..++|++..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g--~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEG--LNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCC--CcCCeEECCCCCE
Confidence 6888888765544334555678888898765 43333 2 369999998875433 221111 1224566777777
Q ss_pred EEEcCC-CCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCC-Cc-EEEEEEcCCCceeEeeccCCcceeE
Q 019672 150 LAVPAS-TTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 150 la~~~~-~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~d-g~-~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
+++... .....|.+||+.++.... ........|+|||+.|+..+.. |. .|.++|+.+++.. .+.... ...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~--~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVG--NYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC--CCc
Confidence 775432 123368888998765321 1345678899999988877653 32 2567788777643 222111 112
Q ss_pred EEEEeecCCCcccEEEEEeCC-C--cEEEEecCCCc
Q 019672 223 FSLSFGQSMQFQDILVATSSS-G--SLHVFSPGFAI 255 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~d-g--~v~iw~l~~~~ 255 (337)
...+|||||+ +|+..+.+ + .|.++|+.++.
T Consensus 334 ~~~~~Spdg~---~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 334 ARPRLSADGK---TLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred cceEECCCCC---EEEEEEccCCceEEEEEECCCCC
Confidence 3568999999 78777654 3 47788887654
No 254
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.95 E-value=8.2e-07 Score=76.25 Aligned_cols=207 Identities=17% Similarity=0.177 Sum_probs=129.7
Q ss_pred ceEEEeCCCCcEEEEEeeC---CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeE-EEEcC
Q 019672 29 GFKIFDSSTGRLCYERAVG---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-VRLNK 104 (337)
Q Consensus 29 g~~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~-i~~~~ 104 (337)
.+..||..+|+.+...... ...........+.+.+.+. ++.|..||..+|+.+.+...+.++.. .....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 3588898888888776531 1112112223444444433 79999999999999998887665332 35567
Q ss_pred CeEEEEE-CCeEEEEECCCCeeeeee-cCCCCCc---eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----
Q 019672 105 KRLVIVL-REKTYIYDANTLAILDTI-DTVPNLK---GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----- 174 (337)
Q Consensus 105 ~~~~v~~-d~~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----- 174 (337)
+.++++. ++.++.+|..+++.+..+ ....... ........ +..++++. .++.|..+|+.+++.+-+
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT--SSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE--TCSEEEEEETTTTEEEEEEESST
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEe--ccCcEEEEecCCCcEEEEeecCC
Confidence 7777777 789999999999998874 3321111 11222222 22444443 268899999998876422
Q ss_pred ----Cc------eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 175 ----AP------LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 175 ----~~------i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
.+ +..-.+..++ .+..++.+|.++.+ |+.+++.+.+.. . . .+.. ...+++. .|..++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~-~-~~~~-~~~~~~~---~l~~~~~~~ 222 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I-S-GIYS-LPSVDGG---TLYVTSSDG 222 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S-S--ECE-CEECCCT---EEEEEETTT
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C-C-CccC-CceeeCC---EEEEEeCCC
Confidence 11 1222333345 67777778866666 999999765332 1 1 1222 1346666 788888999
Q ss_pred cEEEEecCCCcc
Q 019672 245 SLHVFSPGFAIN 256 (337)
Q Consensus 245 ~v~iw~l~~~~~ 256 (337)
.|..||+++++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999988753
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=2.4e-08 Score=101.80 Aligned_cols=162 Identities=12% Similarity=0.173 Sum_probs=115.8
Q ss_pred CCceEEEEECCCCCEEEEEEcC--CceeEEEEcCCe--EEEE-ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672 73 SPRRLCLFNTTTGTALRELNFL--TSILAVRLNKKR--LVIV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~--~~v~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
.|+.|++|....++.+..+... ..|..+.|+.++ +.++ +||.+.+|... .++....+-+ ..+...+.+-+
T Consensus 2228 ~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qch--nk~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCH--NKALSDFRFIG-- 2302 (2439)
T ss_pred CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccC--Cccccceeeee--
Confidence 5999999999999988876543 467777776543 3333 39999999987 3444333332 23344444432
Q ss_pred cEEEEcCCC-CccEEEEEEccCCc---cc---ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672 148 CFLAVPAST-TKGSVLVYNVMELH---SH---CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 148 ~~la~~~~~-~dg~v~i~d~~~~~---~~---~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
..++++|.. .++.+.+||..-.. .+ |.+.++++++-|.-++|++|+.+|. ++|||++..++++++..
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqrql~h~~~~----- 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQRQLRHTFQA----- 2376 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHHHHHHHhhh-----
Confidence 356666532 46789999965322 23 3488999999999999999999998 69999998887666531
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+. ... ++++|+..|.|+||++....
T Consensus 2377 ------~~-~~~---~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ------LD-TRE---YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ------hh-hhh---eeeccCcccceEEEEccccc
Confidence 33 233 89999999999999998764
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=8.4e-07 Score=81.28 Aligned_cols=229 Identities=12% Similarity=0.163 Sum_probs=141.2
Q ss_pred EEEEEcCCCCEEEEEcCCceEEEeCCCCcEE-EEEeeCCEEEEEEccC--CCEEEEEeCCCCCCCCCceEEEEECCCC--
Q 019672 11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLC-YERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLCLFNTTTG-- 85 (337)
Q Consensus 11 ~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~v~iwd~~~~-- 85 (337)
++.+|++|.++.|=-..+.+.+|++.+.+.. ..++..++....+.+. ...+++-.-+. +.....|+||.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~--kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK--KGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC--CCCCcEEEEeccccccc
Confidence 6889999988765445567899998876543 3334455555555544 23444432211 125789999987522
Q ss_pred -CEEEEEE-cCCceeEEEEcCC--eEEE-EE---C---------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 86 -TALRELN-FLTSILAVRLNKK--RLVI-VL---R---------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 86 -~~~~~~~-~~~~v~~i~~~~~--~~~v-~~---d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
+.+..-. +...-..+.|++. .+++ +. | .+++++++........+.. .+| +.++.+++.+.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GP--Vhdv~W~~s~~ 283 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGP--VHDVTWSPSGR 283 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCC--ceEEEECCCCC
Confidence 1221111 2223344666643 2332 22 3 3688888874444434331 223 44555555553
Q ss_pred EEE-EcCCCCccEEEEEEccCCcc--cccCceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 149 FLA-VPASTTKGSVLVYNVMELHS--HCEAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 149 ~la-~~~~~~dg~v~i~d~~~~~~--~~~~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
-++ +-|. .--.+.|||++-.-. ..+++=+++-|+|.|++|+-++-+ |. |.|||+.+.+++..+.-. . -
T Consensus 284 EF~VvyGf-MPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~--~--t 357 (566)
T KOG2315|consen 284 EFAVVYGF-MPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA--N--T 357 (566)
T ss_pred EEEEEEec-ccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC--C--c
Confidence 333 3343 467799999863321 123889999999999999988754 66 589999998888777421 2 2
Q ss_pred EEEEeecCCCcccEEEEEeCC------CcEEEEecCC
Q 019672 223 FSLSFGQSMQFQDILVATSSS------GSLHVFSPGF 253 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~d------g~v~iw~l~~ 253 (337)
+-+.|+|||+ +++++... +.++||+...
T Consensus 358 t~~eW~PdGe---~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 358 TVFEWSPDGE---YFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEEEEcCCCc---EEEEEeccccEEecCCeEEEEecC
Confidence 3469999999 88877654 7899999764
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.1e-05 Score=70.59 Aligned_cols=236 Identities=13% Similarity=0.157 Sum_probs=143.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCC----ceEEEeCCC--CcEEEEE----eeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672 7 SYPVFFVSFNQDNSGFALSTKD----GFKIFDSST--GRLCYER----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~----g~~vw~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (337)
.+..+.++|+|++++|.++-.. ++..|.++. |++.+-. .+.+-..+++..+..++..+.- .-+.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY------~~g~ 112 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY------HSGS 112 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc------cCce
Confidence 4567899999999998876543 466665554 6664322 2344467788777777766553 4688
Q ss_pred EEEEECCC-CCE---EEEEEcCCc----------eeEEEEcCCeEEE--EE--CCeEEEEECCCCeeeee----ecCCCC
Q 019672 77 LCLFNTTT-GTA---LRELNFLTS----------ILAVRLNKKRLVI--VL--REKTYIYDANTLAILDT----IDTVPN 134 (337)
Q Consensus 77 v~iwd~~~-~~~---~~~~~~~~~----------v~~i~~~~~~~~v--~~--d~~i~i~d~~~~~~~~~----~~~~~~ 134 (337)
|.++-++. |.+ +....+... +-...++|++..+ +. -++|.+|++..+++... +.. ..
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~-G~ 191 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP-GA 191 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC-CC
Confidence 99988755 332 223333222 5666777766333 22 56999999987754322 221 11
Q ss_pred CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC--c--cccc-----------CceEEEEeCCCCCEEEEEeCCCcEE
Q 019672 135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--H--SHCE-----------APLAAIVLSSNGMYIATASEQGTII 199 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--~--~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i 199 (337)
...-+.|.++ +++..+..- -+++|.+|..... + .++. ....+|.++|||++|.++..--..|
T Consensus 192 GPRHi~FHpn--~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 192 GPRHIVFHPN--GKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CcceEEEcCC--CcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 2233455544 444333332 4899999987763 2 1111 5678899999999988765433345
Q ss_pred EEEEcCC-CceeEeeccCCcce-eEEEEEeecCCCcccEEEEEeCC-CcEEEEecCCCc
Q 019672 200 RVFLVSE-ATKSYSFRRGTYPS-TIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGFAI 255 (337)
Q Consensus 200 ~vwd~~~-~~~~~~~~~~~~~~-~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l~~~~ 255 (337)
-+|.+.. +.++..+......+ .-....|+|+|+ +|+++..+ ..|.+|.++...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EEEEEccCCCcEEEEEEcCCC
Confidence 6776643 22232221111111 246789999999 88877776 469999987543
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=2.6e-06 Score=77.30 Aligned_cols=241 Identities=11% Similarity=0.102 Sum_probs=150.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC--------CCCCCceE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ--------PSLSPRRL 77 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~d~~v 77 (337)
..-++.+++|||.|++|+.....++.+|.-..+..+.......+..+.+.+...++..-+.... |...++.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~ 110 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV 110 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence 4557899999999999999999999999988876666655567777777666666654443211 23456789
Q ss_pred EEEECCCCCEEEEEEcCC-c--ee-EEEEcCCeEEEE--ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC--ccE
Q 019672 78 CLFNTTTGTALRELNFLT-S--IL-AVRLNKKRLVIV--LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN--ACF 149 (337)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~-~--v~-~i~~~~~~~~v~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 149 (337)
.+||..+|..+..+.... + .. -+.|+-+..+++ ..+.++|+++...-....+... .+.++..++.+|. +..
T Consensus 111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l-r~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL-RPVGILDFSISPEGNHDE 189 (561)
T ss_pred eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc-cccceeeEEecCCCCCce
Confidence 999999999998876543 2 22 244544433333 4789999997221111111111 1345555555443 333
Q ss_pred EEEcC---CCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEe------C-----CCcEEEEEEcCCCcee
Q 019672 150 LAVPA---STTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATAS------E-----QGTIIRVFLVSEATKS 210 (337)
Q Consensus 150 la~~~---~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s------~-----dg~~i~vwd~~~~~~~ 210 (337)
||+=. ....+++++|.+...+.+.+ ..=..+.|++.|++|..-- . ..+ +.|++++.....
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e~~i~ 268 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITERSIP 268 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeecccccc
Confidence 44321 11478899999886554432 2334577888888765321 1 122 467777632221
Q ss_pred EeeccCCcceeEEEEEeecCCCcccEEEEEe--CCCcEEEEecCCC
Q 019672 211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATS--SSGSLHVFSPGFA 254 (337)
Q Consensus 211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s--~dg~v~iw~l~~~ 254 (337)
... ....+|...+|+|+++ .+++.+ ...++.++|++..
T Consensus 269 V~~---~~~~pVhdf~W~p~S~---~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 269 VEK---DLKDPVHDFTWEPLSS---RFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eec---cccccceeeeecccCC---ceeEEecccccceeecccccc
Confidence 111 1245799999999988 655554 6778999998764
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1e-05 Score=70.82 Aligned_cols=269 Identities=13% Similarity=0.137 Sum_probs=150.6
Q ss_pred CCceEEEeCCCC--cEEE---EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC--CCEEE--EEEcC-Cc
Q 019672 27 KDGFKIFDSSTG--RLCY---ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--GTALR--ELNFL-TS 96 (337)
Q Consensus 27 ~~g~~vw~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~--~~~~~--~~~~~-~~ 96 (337)
.+++.+|++++. ++.. .........+.+..+.+.+..+-.. -.++.|.-+.+.. |+... ..... .+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~----~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP----GEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEec----CCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 567899987743 2211 1123455566776666555444321 0256677666543 54332 22222 23
Q ss_pred eeEEEEcCCe--EEEEE--CCeEEEEECCC-CeeeeeecC--C----CCCc---e-EEEEeeCCCccEEEEcCCCCccEE
Q 019672 97 ILAVRLNKKR--LVIVL--REKTYIYDANT-LAILDTIDT--V----PNLK---G-LCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 97 v~~i~~~~~~--~~v~~--d~~i~i~d~~~-~~~~~~~~~--~----~~~~---~-~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
-+-+++++++ ++++. .+.|.++-++. |.+...+.. + +++. . .-.....|++.+|+++.-. .-.|
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri 169 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRI 169 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceE
Confidence 3678887765 44444 78999999965 322211111 0 1111 0 2233457889899988753 3469
Q ss_pred EEEEccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-ceeEeec------cCCc-ceeEEEE
Q 019672 162 LVYNVMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFR------RGTY-PSTIFSL 225 (337)
Q Consensus 162 ~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~------~~~~-~~~i~~l 225 (337)
.+|++..++.... ..-+.|+|+|+|+++-..++=...|-+|..... ..+.++. .... ....-.|
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 9999987664321 567899999999988877764334679998763 2222221 1111 1225678
Q ss_pred EeecCCCcccEEEEE-eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672 226 SFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 304 (337)
Q Consensus 226 ~fs~dg~~~~~las~-s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (337)
..+|||+ +|-++ -....|-+|.+......- .+....... ..| .+ .+.+.+.++.|++..
T Consensus 250 his~dGr---FLYasNRg~dsI~~f~V~~~~g~L------~~~~~~~te---g~~--PR------~F~i~~~g~~Liaa~ 309 (346)
T COG2706 250 HISPDGR---FLYASNRGHDSIAVFSVDPDGGKL------ELVGITPTE---GQF--PR------DFNINPSGRFLIAAN 309 (346)
T ss_pred EECCCCC---EEEEecCCCCeEEEEEEcCCCCEE------EEEEEeccC---CcC--Cc------cceeCCCCCEEEEEc
Confidence 8999999 55543 223478899886543210 111100000 000 01 112244557788777
Q ss_pred e-CCcEEEEEEecCCCC
Q 019672 305 Y-NGYFVEYIFSINNCC 320 (337)
Q Consensus 305 ~-dg~~~~~~~~~~~~~ 320 (337)
. ...+.+|..+.+++.
T Consensus 310 q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 310 QKSDNITVFERDKETGR 326 (346)
T ss_pred cCCCcEEEEEEcCCCce
Confidence 6 567899999988876
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=2.2e-06 Score=80.77 Aligned_cols=208 Identities=14% Similarity=0.022 Sum_probs=119.1
Q ss_pred eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (337)
Q Consensus 30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (337)
+.++|.+..... .......+....+.++++.+++++... ....|.+||+.+++...............|++++
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 345576554322 222223344557778888888876420 1347999999988754433334444567787764
Q ss_pred EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc--cEEEEEEccCCcccc---c-Cc
Q 019672 107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK--GSVLVYNVMELHSHC---E-AP 176 (337)
Q Consensus 107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d--g~v~i~d~~~~~~~~---~-~~ 176 (337)
++++. ++ .|+++|+.+++.. .+..... .....+++|++..+++.+. .+ ..|.++|+.+++... . ..
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSpDG~~I~f~s~-~~g~~~Iy~~dl~~g~~~~Lt~~g~~ 351 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHPDGKSLIFTSE-RGGKPQIYRVNLASGKVSRLTFEGEQ 351 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEEEecCCCC
Confidence 44433 44 5888899877543 3322211 2233455677777776553 23 346666776654321 1 22
Q ss_pred eEEEEeCCCCCEEEEEeCCCcE--EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC-Cc--EEEEec
Q 019672 177 LAAIVLSSNGMYIATASEQGTI--IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSP 251 (337)
Q Consensus 177 i~~~~~s~dg~~lat~s~dg~~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-g~--v~iw~l 251 (337)
....+|+|||++|+..+.++.. |.++|+.+++.. .+.... ......|+|||+ +|+..+.+ +. +.++++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~---~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGT---MVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEEC
Confidence 3457899999999887664322 345788777642 332221 112347999999 66665544 43 666665
Q ss_pred C
Q 019672 252 G 252 (337)
Q Consensus 252 ~ 252 (337)
+
T Consensus 425 ~ 425 (448)
T PRK04792 425 D 425 (448)
T ss_pred C
Confidence 4
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.84 E-value=3.6e-08 Score=100.57 Aligned_cols=190 Identities=14% Similarity=0.192 Sum_probs=132.1
Q ss_pred CeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee-CCEEE--EEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 9 PVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV-GAFSI--VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
.|.++.=+|-..+.++|+.+|. ++|....++.+..... +...+ +.+.+.++...++.+ ||.+.+|...
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~-------dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG-------DGDLSLWQAS- 2281 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc-------CCceeecccC-
Confidence 4666666788888888888885 9999888887776543 33222 334556676666655 8999999987
Q ss_pred CCEEEEEEcCC-ceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672 85 GTALRELNFLT-SILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (337)
Q Consensus 85 ~~~~~~~~~~~-~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg 159 (337)
.++......+. ...++.|-...++.++ ++.+.+||.--.-...-+. ..+..+..++...|..++++++|. +|
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr--~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR--KG 2358 (2439)
T ss_pred CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC--cC
Confidence 45555554443 4455555444444444 4589999974322111122 134456777777788889999884 89
Q ss_pred EEEEEEccCCcccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672 160 SVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 215 (337)
Q Consensus 160 ~v~i~d~~~~~~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~ 215 (337)
.|.+||++..+..|+-+. ++ ...++++|+..|. |+||++....+++.+..
T Consensus 2359 ~v~l~D~rqrql~h~~~~----~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA----LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cEEEeehHHHHHHHHhhh----hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 999999998888777444 44 5569999999998 79999998888887753
No 262
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1.2e-06 Score=81.27 Aligned_cols=255 Identities=11% Similarity=0.074 Sum_probs=143.8
Q ss_pred CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (337)
Q Consensus 19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 97 (337)
+..+.+++.++ +..+|.++|+++......+..........+. +++.. .++.|..+|.++|+.+-+.....+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~-v~v~~------~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGL-VLVHT------SNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCE-EEEEC------CCCEEEEEEccCCCEeeeecCCCCc
Confidence 34566666655 6889999999887665433211111111233 34443 3789999999999988777643221
Q ss_pred e------EEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCC--ce---EEEEeeCC---CccEEEEcCCCCccEEE
Q 019672 98 L------AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL--KG---LCAFSPSL---NACFLAVPASTTKGSVL 162 (337)
Q Consensus 98 ~------~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~--~~---~~~~~~~~---~~~~la~~~~~~dg~v~ 162 (337)
. .-....+.+++.. ++.+..+|..+++.+.+....... .. ...+...| ++ .+...+ .+|.+.
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~--~~g~l~ 269 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALA--YNGNLV 269 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEE--cCCeEE
Confidence 1 1112334555555 788999999998876654321110 00 00000111 22 333344 378899
Q ss_pred EEEccCCcccccCc---eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672 163 VYNVMELHSHCEAP---LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA 239 (337)
Q Consensus 163 i~d~~~~~~~~~~~---i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las 239 (337)
.+|+.+++..-+.+ ...+. .++..|..++.+|. +..+|..+|+.+.+...... ....+.... ++ +|..
T Consensus 270 ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v~-~g----~l~v 340 (394)
T PRK11138 270 ALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVLY-NG----YLVV 340 (394)
T ss_pred EEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEEE-CC----EEEE
Confidence 99999887653311 11122 24567777888887 57899999988765432111 111222222 34 6888
Q ss_pred EeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672 240 TSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 240 ~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~ 314 (337)
++.+|.|++.|.++++..-+ + ...+. .+++. | -..+++|++++.||.++.+.+
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~------~--~~~~~---~~~s~----------P-~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQ------Q--KVDSS---GFLSE----------P-VVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EeCCCEEEEEECCCCCEEEE------E--EcCCC---cceeC----------C-EEECCEEEEEeCCceEEEEeC
Confidence 99999999999877643110 0 00000 01110 0 012368999999999988764
No 263
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=4.4e-06 Score=77.62 Aligned_cols=216 Identities=9% Similarity=0.068 Sum_probs=127.3
Q ss_pred CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCE-EE----------EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAF-SI----------VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (337)
Q Consensus 19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~ 86 (337)
+..+.+++.++ +.-+|.++|+++...+.... .. .......+.+ +++. .++.+..+|.++|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v-~v~~------~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKV-YIGS------EKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEE-EEEc------CCCEEEEEECCCCC
Confidence 34555555554 58889999998876543220 00 0011112233 3443 47899999999999
Q ss_pred EEEEEEcCCceeE-EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCc---eEEEEeeCCCccEEEEcCCCCccEE
Q 019672 87 ALRELNFLTSILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 87 ~~~~~~~~~~v~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
.+-+......+.+ -.+..+.+++.. ++.+..+|..+++.+.......... +..+-... ++ .++.+. .+|.+
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~--~~g~v 217 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGG--DNGRV 217 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEc--CCCEE
Confidence 8887766554332 223455566555 7899999999999887775431100 00000011 12 333333 37888
Q ss_pred EEEEccCCcccccCc------------eEEEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 162 LVYNVMELHSHCEAP------------LAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 162 ~i~d~~~~~~~~~~~------------i~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
..+|..+++...+.+ ...+.-+| .+..+..++.+|. +.-+|..+|+.+.+...+. ...+..
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~----~~~~~~ 292 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYGS----VNDFAV 292 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCCC----ccCcEE
Confidence 888988877543211 11122233 2456666778887 4789999999877654321 112222
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 228 GQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 228 s~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
++. .+..++.+|.++.+|.++++
T Consensus 293 --~~~---~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 293 --DGG---RIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred --ECC---EEEEEcCCCeEEEEECCCCc
Confidence 344 67788889999999987664
No 264
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=85.28 Aligned_cols=244 Identities=10% Similarity=0.076 Sum_probs=141.3
Q ss_pred EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc--CCceeEEEEcC---CeEEE-EE-CCeEEEEECC-CCee
Q 019672 54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF--LTSILAVRLNK---KRLVI-VL-REKTYIYDAN-TLAI 125 (337)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~i~~~~---~~~~v-~~-d~~i~i~d~~-~~~~ 125 (337)
+.|....-.+++++ .|.+|.+||+..++....+.. ..+|...+|-| +.-++ +. |+.+++=.+. ++..
T Consensus 148 V~FN~~Gd~l~SgS-----DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 148 VHFNQRGDVLASGS-----DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred eeecccCceeeccC-----ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 34444444445552 699999999999888776643 23565555533 33333 23 8888887663 3322
Q ss_pred e--eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc--------cC---ceEEEEeCCCCC-EEEE
Q 019672 126 L--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EA---PLAAIVLSSNGM-YIAT 191 (337)
Q Consensus 126 ~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~--------~~---~i~~~~~s~dg~-~lat 191 (337)
. ..+..+.++.-.+++-+..... +.++| +|+.++-+|++...... .. ....++.+|-.. ++|+
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~-f~S~g--eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKP-FLSCG--EDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred ecceecccccCccceeeecCCCCCc-ccccc--cccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 2 2233344444556666544433 34455 59999999988654321 12 578899999655 8999
Q ss_pred EeCCCcEEEEEEcCCCce------eEeeccCC----cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc--ccCC
Q 019672 192 ASEQGTIIRVFLVSEATK------SYSFRRGT----YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI--NQRR 259 (337)
Q Consensus 192 ~s~dg~~i~vwd~~~~~~------~~~~~~~~----~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~--~~~~ 259 (337)
|+.|- ..|+||.+.-.. +..|...+ .+..|++++|+.++. -|+++-+|--|++|.-.... ++-+
T Consensus 300 gG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---ElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 300 GGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---ELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred CChhh-hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---ceeeeecccceEEeccccccCCCCCC
Confidence 99986 469999865432 23332221 233599999998887 56666667789999533221 1111
Q ss_pred CCcccccccc-cccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 260 GGRTSSILGS-ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 260 ~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
......+... +-.+. .. ..++-.--+||+.+++++|+.=|.|.+|.-.+.
T Consensus 376 ~s~~~~~~k~vYKGHr-N~-------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHR-NS-------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred Ccchhhccchhhcccc-cc-------cccceeeeccCccceEEecCccceEEEEecchh
Confidence 0000011111 00000 00 001111124888899999999999999976543
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=4.7e-06 Score=75.17 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=132.4
Q ss_pred EcCCCCEEEEEcCCceEEEeCCCCcEE-EEEe-----e--C-----CEEEEE-E-ccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 15 FNQDNSGFALSTKDGFKIFDSSTGRLC-YERA-----V--G-----AFSIVE-M-LYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 15 fs~dg~~la~g~~~g~~vw~~~~~~~~-~~~~-----~--~-----~~~~~~-~-~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
.|.||+.++-.....+.+||.++.++. .+.. . . +...++ + .-+++.+++++-| +..|
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------kaFi 345 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------KAFI 345 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--------cEEE
Confidence 467898888776666899998776432 1111 0 0 011111 1 2256888998864 6666
Q ss_pred EECCCCCEEEEEEcCCceeEEEE--cCCeEEEEE-CC-eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 80 FNTTTGTALRELNFLTSILAVRL--NKKRLVIVL-RE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~--~~~~~~v~~-d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
.+.-.+ ....+.....|.-..+ .++..+++. |+ .+-|||.++++..+... +-..+.++..++++..++.+.
T Consensus 346 ~~~~~~-~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---~lg~I~av~vs~dGK~~vvaN- 420 (668)
T COG4946 346 MRPWDG-YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---DLGNIEAVKVSPDGKKVVVAN- 420 (668)
T ss_pred ECCCCC-eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC---CccceEEEEEcCCCcEEEEEc-
Confidence 654433 2334444455654443 566777777 55 89999999886544432 234577888888888888776
Q ss_pred CCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCc---EEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672 156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEATKSYSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f 227 (337)
...++.++|+.++... ..+-|+.++|||++++||.+=-+|- .|+++|+.+++........ +.=.+-+|
T Consensus 421 -dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t---a~DfsPaF 496 (668)
T COG4946 421 -DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT---AYDFSPAF 496 (668)
T ss_pred -CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc---ccccCccc
Confidence 4788999999988643 1277999999999999999877762 3799999887764332221 22245589
Q ss_pred ecCCC
Q 019672 228 GQSMQ 232 (337)
Q Consensus 228 s~dg~ 232 (337)
.||++
T Consensus 497 D~d~r 501 (668)
T COG4946 497 DPDGR 501 (668)
T ss_pred CCCCc
Confidence 99998
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=5.7e-06 Score=77.50 Aligned_cols=218 Identities=12% Similarity=0.003 Sum_probs=123.4
Q ss_pred CCCCeEEEEEcCCCCEEE---EEcCCc---eEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 6 SSYPVFFVSFNQDNSGFA---LSTKDG---FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la---~g~~~g---~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
....+.+-+|+|||+.++ ++..++ +.+.++.+++...-. ..+......+.++++.+++++.... ..+-.+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC--CcceeEE
Confidence 345667789999997532 444443 466688877532211 1223334567788888888774210 1244556
Q ss_pred EEECCCC--CEEEEEE-cC-CceeEEEEcCCe--EEEEE--CC--eEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCc
Q 019672 79 LFNTTTG--TALRELN-FL-TSILAVRLNKKR--LVIVL--RE--KTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 79 iwd~~~~--~~~~~~~-~~-~~v~~i~~~~~~--~~v~~--d~--~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
+|++..+ .....+. .. .......|+|++ ++... ++ .|+++++.. +.....+..... ......++|++
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~wSPDG 338 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAWSPDG 338 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeECCCC
Confidence 6887653 1222232 22 233567788775 44444 34 455556542 222333322211 23345667788
Q ss_pred cEEEEcCCC-CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCC-C-cEEEEEEcCCCceeEeeccCCcce
Q 019672 148 CFLAVPAST-TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQ-G-TIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 148 ~~la~~~~~-~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~d-g-~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
..|++.... ....|.+||+.+++...- ..+....|+|||+.|+..+.+ + ..|.++|+.+++..... .+ ..
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~--~g 415 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IG--SG 415 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC--CC
Confidence 888876531 134799999987754321 356789999999988755432 2 23678899877653322 22 23
Q ss_pred eEEEEEeecC
Q 019672 221 TIFSLSFGQS 230 (337)
Q Consensus 221 ~i~~l~fs~d 230 (337)
.+...+|||-
T Consensus 416 ~~~~p~Ws~~ 425 (428)
T PRK01029 416 EKRFPSWGAF 425 (428)
T ss_pred cccCceecCC
Confidence 3556778774
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=2.7e-07 Score=78.81 Aligned_cols=285 Identities=12% Similarity=0.124 Sum_probs=148.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc-----EEEEEeeCC--------------EEEEEEccCC--CEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-----LCYERAVGA--------------FSIVEMLYSS--SLLAI 63 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~~~~~ 63 (337)
....|+++.|...|.+|++|..+| +.+|.-+... ...+.+.+. +.-+++.-+. +.. +
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF-L 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF-L 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE-E
Confidence 345699999999999999998877 5777543321 111122111 1122332222 233 3
Q ss_pred EeCCCCCCCCCceEEEEECCCCCE--EEEE----EcCCceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCC
Q 019672 64 VGAGEQPSLSPRRLCLFNTTTGTA--LREL----NFLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVP 133 (337)
Q Consensus 64 ~~~g~~~~~~d~~v~iwd~~~~~~--~~~~----~~~~~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~ 133 (337)
+++ .|++|++|.+..... +.+- .++.+..+-..+++.+.... |.-|..+. ..+....
T Consensus 104 lst------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p-------~rvyaNa 170 (460)
T COG5170 104 LST------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP-------CRVYANA 170 (460)
T ss_pred Eec------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc-------ceecccc
Confidence 444 499999999865421 1111 11111110000111111110 11111110 1111122
Q ss_pred CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------c-----cCceEEEEeCCC-CCEEEEEeCCCcEE
Q 019672 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------C-----EAPLAAIVLSSN-GMYIATASEQGTII 199 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~-----~~~i~~~~~s~d-g~~lat~s~dg~~i 199 (337)
++.-+.+++++.|...+.++. |-.|.+|++.-...- + +.-|++..|+|. ...+...++.|. |
T Consensus 171 H~yhiNSiS~NsD~et~lSaD---dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-I 246 (460)
T COG5170 171 HPYHINSISFNSDKETLLSAD---DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-I 246 (460)
T ss_pred ceeEeeeeeecCchheeeecc---ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-E
Confidence 344466788888887877764 677888987643211 1 156889999995 456777788898 7
Q ss_pred EEEEcCCCc------eeEeeccCC--------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccc
Q 019672 200 RVFLVSEAT------KSYSFRRGT--------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS 265 (337)
Q Consensus 200 ~vwd~~~~~------~~~~~~~~~--------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~ 265 (337)
++-|++... .+.+..... -...|..+.|+++|+ ++++-+ --+|+|||+...+.+... ..
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---yIlsRd-yltvkiwDvnm~k~pikT---i~ 319 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---YILSRD-YLTVKIWDVNMAKNPIKT---IP 319 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---EEEEec-cceEEEEecccccCCcee---ec
Confidence 999997322 222111110 012478899999998 777654 468999999887765420 00
Q ss_pred cccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 266 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 266 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
+--.+.+....+....-. .-+.-+.+..+.+.+++|+.++.+-+|..++.
T Consensus 320 -~h~~l~~~l~d~YEnDai-fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 320 -MHCDLMDELNDVYENDAI-FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred -hHHHHHHHHHhhhhccce-eeeEEEEecCCcccccccccccceeeeccccC
Confidence 000000111111111000 00112233456688999999999988885443
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=4.9e-06 Score=77.93 Aligned_cols=174 Identities=8% Similarity=-0.006 Sum_probs=100.7
Q ss_pred CceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEE--EE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVI--VL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v--~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
...|.+.|...+....-......+..=.|+|+ ++.+ .. + ..|++.++.+++......... ......++|
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSP 240 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSP 240 (428)
T ss_pred cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECC
Confidence 34688888765544332223345556678887 3322 22 2 368888998775433322211 223456778
Q ss_pred CccEEEEcCCC---CccEEEEEEccCC---c--cccc---CceEEEEeCCCCCEEEEEeC-CCcEEEEEE--cCC-Ccee
Q 019672 146 NACFLAVPAST---TKGSVLVYNVMEL---H--SHCE---APLAAIVLSSNGMYIATASE-QGTIIRVFL--VSE-ATKS 210 (337)
Q Consensus 146 ~~~~la~~~~~---~dg~v~i~d~~~~---~--~~~~---~~i~~~~~s~dg~~lat~s~-dg~~i~vwd--~~~-~~~~ 210 (337)
|+..|++.... .+..+.+|++..+ . .+.. ......+|||||+.|+..+. +|. .+||. +.. +...
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccccce
Confidence 88888876421 1334455776542 1 1111 23467899999999887764 554 35554 432 2223
Q ss_pred EeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCCCcc
Q 019672 211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAIN 256 (337)
Q Consensus 211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~~~~ 256 (337)
..+... ...+....|||||+ +|+..+.+ ..|.+||+.+++.
T Consensus 320 ~~lt~~--~~~~~~p~wSPDG~---~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 320 RLLTKK--YRNSSCPAWSPDGK---KIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred EEeccC--CCCccceeECCCCC---EEEEEEcCCCCcEEEEEECCCCCe
Confidence 333222 23456789999999 88876554 3589999876643
No 269
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=5.9e-06 Score=70.91 Aligned_cols=206 Identities=14% Similarity=0.113 Sum_probs=123.8
Q ss_pred CceEEEEECCCCCEEEEEEcCC---ceeE-EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 74 PRRLCLFNTTTGTALRELNFLT---SILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~---~v~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
+++|..||.++|+.+-+..... ...+ .....+.++++. ++.++.||..+++.+.++.......... ....+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~-- 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGG-- 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETT--
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eeccc--
Confidence 6799999999999999887632 2222 223677777775 8899999999999988876533222221 22222
Q ss_pred EEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc
Q 019672 149 FLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP 219 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~ 219 (337)
.+++.. .++.+..+|+.+++...+ ..........++..++.+..+|. |..+|.++|+.+.........
T Consensus 78 ~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-
T ss_pred cccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCC
Confidence 233232 267899999888876533 11122223334778888888887 579999999998877543211
Q ss_pred --eeE-------EEEEeecCCCcccEEEEEeCCCc-EEEEecCCCcccCCCCcccccccccccccceeecccccceeeee
Q 019672 220 --STI-------FSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN 289 (337)
Q Consensus 220 --~~i-------~~l~fs~dg~~~~~las~s~dg~-v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 289 (337)
..+ ..+.+. ++ .+..++.++. +.+ |+++++. .|...... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~~~~~-d~~tg~~---------------------~w~~~~~~-~~- 205 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG----RVYVSSGDGRVVAV-DLATGEK---------------------LWSKPISG-IY- 205 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT----EEEEECCTSSEEEE-ETTTTEE---------------------EEEECSS--EC-
T ss_pred CCcceeeecccccceEEE-CC----EEEEEcCCCeEEEE-ECCCCCE---------------------EEEecCCC-cc-
Confidence 111 233333 34 4666676775 555 8877652 11110000 00
Q ss_pred ccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 290 AFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 290 ~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
.. ....++.|++.+.+|.+..|++.+
T Consensus 206 ~~-~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 206 SL-PSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred CC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence 00 022347889888999988886643
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=2.7e-06 Score=71.38 Aligned_cols=179 Identities=16% Similarity=0.057 Sum_probs=117.1
Q ss_pred CCceEEEEECCCCCEEEEEEcCCceeEEEE------cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSILAVRL------NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~------~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
+.+.+.+|...+++-... .....+.++.+ +.-.+.++. |.++++.++..+..-..+..+ + ..+...+.++
T Consensus 92 ~~g~fd~~~~~tn~~h~~-~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~-~~~ns~~~sn 168 (344)
T KOG4532|consen 92 ASGQFDLFACNTNDGHLY-QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-N-LTQNSLHYSN 168 (344)
T ss_pred ccceeeeecccCccccee-eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-c-cceeeeEEcC
Confidence 578999999987653322 12222222222 233455555 778888887544222222211 1 2244556667
Q ss_pred CccEEEEcCCCCccEEEEEEccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE---eec
Q 019672 146 NACFLAVPASTTKGSVLVYNVMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY---SFR 214 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~---~~~ 214 (337)
++.++++.| ....|..|.+......+. ..=.+..|+.....+|+++.||++ .|||++...... .-.
T Consensus 169 d~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~-~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 169 DPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC-AIYDVRNMATPMAEISST 245 (344)
T ss_pred CCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE-EEEEecccccchhhhccc
Confidence 788999888 467899998765433221 345678899999999999999985 899998754332 223
Q ss_pred cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 215 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
+.++.+.+..+.||+-|. .++|.-.-.-+.+||-|+++..+..
T Consensus 246 rp~hnGa~R~c~Fsl~g~-lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGL-LDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred CCCCCCceEEEEecCCCc-ceEEEEecCcceEEEEEcccCceee
Confidence 455677899999998765 3466666666889999999877644
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=4.9e-06 Score=76.78 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=120.7
Q ss_pred cCCCCEEEEEcCCce-EEEeCCCCcEEEEEee-----CCEEEEEE----cc----------------CCCEEEEEeCCCC
Q 019672 16 NQDNSGFALSTKDGF-KIFDSSTGRLCYERAV-----GAFSIVEM----LY----------------SSSLLAIVGAGEQ 69 (337)
Q Consensus 16 s~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~-----~~~~~~~~----~~----------------~~~~~~~~~~g~~ 69 (337)
.|-+.+||..+.+|. ++|++.++++..+... +......+ .+ +...+++ |.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl-gt--- 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL-GT--- 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe-ec---
Confidence 345678888888875 9999999877554321 11111111 00 1112233 32
Q ss_pred CCCCCceEEEEECCCCCEEEEEE---cCCceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672 70 PSLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP 143 (337)
Q Consensus 70 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 143 (337)
..+.|-+++...|+....+. +.++|.++.++.+--.+ +. |.++..|+....+.++..... +..+..+++
T Consensus 78 ---~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~~~sl~i 152 (541)
T KOG4547|consen 78 ---PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPLVSSLCI 152 (541)
T ss_pred ---CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCccceEEE
Confidence 47899999999999887776 44578888776553333 22 779999999998887777543 234556677
Q ss_pred CCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCC-----CCEEEEEeCCCcEEEEEEcCC
Q 019672 144 SLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~d-----g~~lat~s~dg~~i~vwd~~~ 206 (337)
.||+..+++++ ++|++||+.+.+.+. .++|++++|--+ |.++.++..-.+.|.+|-+..
T Consensus 153 s~D~~~l~~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPDGKILLTAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCCEEEecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 78888998876 689999999988753 389999999877 777776654444466887654
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=1.3e-06 Score=75.77 Aligned_cols=154 Identities=14% Similarity=0.277 Sum_probs=96.4
Q ss_pred CceeEEEEcCCeEEEEE--CCeEEEEECCCCe-eeeeecCCC-CC----ceEEEEeeCCCcc-EEEEcCCCCccEEEEEE
Q 019672 95 TSILAVRLNKKRLVIVL--REKTYIYDANTLA-ILDTIDTVP-NL----KGLCAFSPSLNAC-FLAVPASTTKGSVLVYN 165 (337)
Q Consensus 95 ~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~-~~~~~~~~~-~~----~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d 165 (337)
-.|.+|+++.++-...+ |=+|-+|++.--. ....+...+ +. .-+.+-.++|..+ ++++++ ..|+|++.|
T Consensus 165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcD 242 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCD 242 (433)
T ss_pred eEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEee
Confidence 36888999877644433 4489999985432 222222111 11 1123334445433 455555 489999999
Q ss_pred ccCCcc------cc---c------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCc-----
Q 019672 166 VMELHS------HC---E------------APLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTY----- 218 (337)
Q Consensus 166 ~~~~~~------~~---~------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~----- 218 (337)
++.... +. . ..|..+.|+++|+++++-..- + ++|||+. ..+.+.++..+..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHH
Confidence 984321 00 0 678999999999999986543 4 6999994 4444443321100
Q ss_pred -----cee---EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 219 -----PST---IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 219 -----~~~---i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
... -..++||-++. ++++||-.+..++|++..+.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~---~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDS---YVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHhhccchhheeEEEEcCCcc---eEecccccceEEEecCCCCc
Confidence 011 24579999998 99999999999999976543
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.62 E-value=2.4e-05 Score=70.72 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=85.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc--eEEEeCCCCcE-EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDG--FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g--~~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+++..|....+.-+++-++.|..+| +-|||.++++. ......+.+..+....++..+++. . ....+.+.|
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-N------dr~el~vid 429 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-N------DRFELWVID 429 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-c------CceEEEEEE
Confidence 5677899999999999999999887 58999999974 555566777777777776665543 2 245666778
Q ss_pred CCCCCEEEE-EEcCCceeEEEEcCCeEEEEE-------CCeEEEEECCCCeeeee
Q 019672 82 TTTGTALRE-LNFLTSILAVRLNKKRLVIVL-------REKTYIYDANTLAILDT 128 (337)
Q Consensus 82 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~ 128 (337)
+.+|....- -+-..-|+.+.|+++.-.++- ...|++||+.+++....
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 888875332 122346899999998776664 34899999988776543
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.62 E-value=1.3e-06 Score=77.03 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=74.6
Q ss_pred ccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672 158 KGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 233 (337)
Q Consensus 158 dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 233 (337)
...+.+|....+... |.+.+..|+++||+++|+|+..|+. |||-.....-.+..|..|| ..-|..++.-++.
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclGH-~eFVS~isl~~~~-- 206 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLGH-KEFVSTISLTDNY-- 206 (390)
T ss_pred ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhcccc-HhheeeeeeccCc--
Confidence 455556655444322 4488999999999999999999997 7998777766777777664 5568888887664
Q ss_pred ccEEEEEeCCCcEEEEecCCCcccC
Q 019672 234 QDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 234 ~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
.|++||.|++|++||+.+++...
T Consensus 207 --~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred --eeeecCCCCcEEEEecccCCccc
Confidence 69999999999999999988754
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=1.1e-05 Score=67.96 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=117.1
Q ss_pred CEEEEEcCCc-eEEEeCCCCcEEEE-E--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-
Q 019672 20 SGFALSTKDG-FKIFDSSTGRLCYE-R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL- 94 (337)
Q Consensus 20 ~~la~g~~~g-~~vw~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~- 94 (337)
.+||+|+.-| +.+|.+.+.+.... . ...++.++.---+...-++.+. .|.++++.+++-+..-.....+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s------ndht~k~~~~~~~s~~~~~h~~~ 158 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS------NDHTGKTMVVSGDSNKFAVHNQN 158 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc------CCcceeEEEEecCcccceeeccc
Confidence 4678886655 79999887653221 1 1233333221112222233333 4888888887654433222222
Q ss_pred CceeEEEEcCCe--EEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672 95 TSILAVRLNKKR--LVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170 (337)
Q Consensus 95 ~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~ 170 (337)
-.+..+.++++. +.+++ ...|..|.+... +.+..+...+....-.+.+++.....+|++. +||++.|||++...
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~--Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF--QDGTCAIYDVRNMA 236 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe--cCCcEEEEEecccc
Confidence 135566666554 33444 458999988653 2222222222333345567777777888887 69999999998654
Q ss_pred cc----------ccCceEEEEeCCCCC--EEEEEeCCCcEEEEEEcCCCceeEeeccCC------cceeEEEEEeecCCC
Q 019672 171 SH----------CEAPLAAIVLSSNGM--YIATASEQGTIIRVFLVSEATKSYSFRRGT------YPSTIFSLSFGQSMQ 232 (337)
Q Consensus 171 ~~----------~~~~i~~~~~s~dg~--~lat~s~dg~~i~vwd~~~~~~~~~~~~~~------~~~~i~~l~fs~dg~ 232 (337)
.. |.+.+..+.|+|-|. +|.- ++--..+.|-|++++...+.+.... ....|..-.|+.++.
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEE-ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 32 348999999998655 2333 3332336899999987655442211 112367777777766
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.4e-07 Score=84.75 Aligned_cols=171 Identities=16% Similarity=0.218 Sum_probs=115.0
Q ss_pred CCCceEEEEECCCC-------CEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC--C-ceEE
Q 019672 72 LSPRRLCLFNTTTG-------TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPN--L-KGLC 139 (337)
Q Consensus 72 ~~d~~v~iwd~~~~-------~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~--~-~~~~ 139 (337)
+.|++|++|.++.. .+..++. |..+|.++.|-.+...+++ |+-|++||---++++.++...+. . ..+.
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ik 833 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIK 833 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeE
Confidence 36999999997632 2333443 3458888888666544544 99999999876766665532221 1 2222
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 209 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~ 209 (337)
++ ++-+...+. ++.....+|+++|.+.....++ +.+.++++.|.|+++|.|=..|. |-+.|.++|+.
T Consensus 834 cl-~nv~~~ili-AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-i~~LDaR~G~v 910 (1034)
T KOG4190|consen 834 CL-ENVDRHILI-AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-IAILDARNGKV 910 (1034)
T ss_pred ec-ccCcchhee-eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-EEEEecCCCce
Confidence 33 222333333 3322578999999988764432 55899999999999999999997 57999999999
Q ss_pred eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEE-Eec
Q 019672 210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV-FSP 251 (337)
Q Consensus 210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~i-w~l 251 (337)
+..++. . .+....++- |..+ .|+....|.++.| |--
T Consensus 911 INswrp-m-ecdllqlaa-psdq---~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 911 INSWRP-M-ECDLLQLAA-PSDQ---ALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eccCCc-c-cchhhhhcC-chhH---HHHhhcccceeEeeehh
Confidence 887753 2 233334443 5666 7888888888888 854
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=6.3e-05 Score=77.87 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=103.4
Q ss_pred CCceEEEEECCCCCEEEEEEcC---------------CceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeeeeecCC-
Q 019672 73 SPRRLCLFNTTTGTALRELNFL---------------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTV- 132 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~---------------~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~- 132 (337)
..++|++||.. ++.+..+... ....+|+++++ .++++. .+.|+++|+.++.. .++...
T Consensus 588 ~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G 665 (1057)
T PLN02919 588 NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNG 665 (1057)
T ss_pred CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccC
Confidence 47899999975 4444433221 12466777653 456655 46799999877543 232110
Q ss_pred -------CC-------CceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCcccc-------------------cCceE
Q 019672 133 -------PN-------LKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELHSHC-------------------EAPLA 178 (337)
Q Consensus 133 -------~~-------~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~~~~-------------------~~~i~ 178 (337)
.. ...-..++.++ ++.++++.. .++.|++||..++.... -...+
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~ 743 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS 743 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc
Confidence 00 00012334455 333333333 47889999986653210 03456
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee-----------ccCCc--------ceeEEEEEeecCCCcccEEEE
Q 019672 179 AIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-----------RRGTY--------PSTIFSLSFGQSMQFQDILVA 239 (337)
Q Consensus 179 ~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~-----------~~~~~--------~~~i~~l~fs~dg~~~~~las 239 (337)
.|+++|+|+.|..+..+...|++||+.++...... ..+.. -.....++|+++|. ++++
T Consensus 744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---LYVA 820 (1057)
T PLN02919 744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---IYVA 820 (1057)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---EEEE
Confidence 79999999855555444334799999876532110 00000 01135889999998 8999
Q ss_pred EeCCCcEEEEecCCCc
Q 019672 240 TSSSGSLHVFSPGFAI 255 (337)
Q Consensus 240 ~s~dg~v~iw~l~~~~ 255 (337)
-+.+++|++||.++..
T Consensus 821 Ds~N~rIrviD~~tg~ 836 (1057)
T PLN02919 821 DSYNHKIKKLDPATKR 836 (1057)
T ss_pred ECCCCEEEEEECCCCe
Confidence 9999999999987643
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.58 E-value=9.4e-05 Score=75.35 Aligned_cols=270 Identities=15% Similarity=0.148 Sum_probs=156.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEE----eCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIF----DSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
....|.++.+-+|...+.++..+| +.+. +.++.+.-. ..-..++...+++++...++++++ +++|.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-------~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-------EGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-------CCEEEE
Confidence 456799999999999888888887 4566 444443322 222367888888888999999987 677777
Q ss_pred EECCCCCEEEEEEcCC------ceeEEEEcCCeE-EEEECCeEEEEECCCCeee----eeecCCCCCceEEEEeeCCCcc
Q 019672 80 FNTTTGTALRELNFLT------SILAVRLNKKRL-VIVLREKTYIYDANTLAIL----DTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 80 wd~~~~~~~~~~~~~~------~v~~i~~~~~~~-~v~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
-+ ++-.++.+..... .-..+-|-.+.- +=+..++----.++..... ..+. ...+...+++-+|+.
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s---~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS---WDDGRVRISWRGDGE 222 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc---cCCCceEEEECCCCc
Confidence 64 4455555544321 112222211100 0000010000000111000 0111 122456778889999
Q ss_pred EEEEcCC--CC--ccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeC--CCcEEEEEEcCCCceeEeeccC-
Q 019672 149 FLAVPAS--TT--KGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRG- 216 (337)
Q Consensus 149 ~la~~~~--~~--dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~--dg~~i~vwd~~~~~~~~~~~~~- 216 (337)
++|+... .. -..++||+-. +..... +--.+++|-|.|++||+.-. +...|-+|. ++|..-.+|...
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~ 300 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC
Confidence 9997753 11 2578999865 332221 33457899999999998875 122244565 455544444322
Q ss_pred -CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccc--cc---ceeecccccceeeeec
Q 019672 217 -TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP--ES---VNEVLDPADHHVLRNA 290 (337)
Q Consensus 217 -~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~--~~---~~~~w~~~~~~~~~~~ 290 (337)
.....|..|+|++|+. .||.--.|. |++|-...- ..|+...+. +. ..-.|++..
T Consensus 301 ~~~~~~v~~l~Wn~ds~---iLAv~~~~~-vqLWt~~NY---------HWYLKqei~~~~~~~~~~~~Wdpe~------- 360 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSE---ILAVWLEDR-VQLWTRSNY---------HWYLKQEIRFSSSESVNFVKWDPEK------- 360 (928)
T ss_pred CCCCceeeEEEECCCCC---EEEEEecCC-ceEEEeeCC---------EEEEEEEEEccCCCCCCceEECCCC-------
Confidence 2345699999999999 899977554 999976432 122222211 11 114576653
Q ss_pred cCCCcccCEEEEEEeCCcEEEEEE
Q 019672 291 FPAGVKRASVSVITYNGYFVEYIF 314 (337)
Q Consensus 291 ~~~~~~~~~l~~~~~dg~~~~~~~ 314 (337)
..+|.+++.+|.+.++.+
T Consensus 361 ------p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 361 ------PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred ------CCEEEEEecCCcEEEEEE
Confidence 367999999999977666
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.53 E-value=8.1e-05 Score=75.81 Aligned_cols=293 Identities=14% Similarity=0.183 Sum_probs=153.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC-C-------CCCCce
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ-P-------SLSPRR 76 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~-------~~~d~~ 76 (337)
-+.+|.+++||||++.||..+.++ +.+- ..+++.+.+...+. -.+..+..+.||-|+. + +.+.+.
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~m-t~~fd~i~E~~l~~-----~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~ 192 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLM-TRDFDPISEVPLDS-----DDFGESKHVSVGWGKKETQFHGSAGKAAARQ 192 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEE-eccceEEEEeecCc-----cccCCCceeeeccCcccCccCcchhhhhhhh
Confidence 356899999999999998887665 3333 34455554433211 0111122233333311 1 000000
Q ss_pred EEEEECCCC-CEEEEEEcCCceeEEEEcCCe--EEEEE-----C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672 77 LCLFNTTTG-TALRELNFLTSILAVRLNKKR--LVIVL-----R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (337)
Q Consensus 77 v~iwd~~~~-~~~~~~~~~~~v~~i~~~~~~--~~v~~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (337)
+=|.... .....+.....-..|+|-+|+ +++.. + ..++||+-. |++..+-+...+- .-++++-|.
T Consensus 193 --~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL--e~~l~WrPs 267 (928)
T PF04762_consen 193 --LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL--EGALSWRPS 267 (928)
T ss_pred --ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc--cCCccCCCC
Confidence 0011000 000111122233457776655 33332 2 479999954 6544333322221 225566677
Q ss_pred ccEEEEcCCC-CccEEEEEEccCCcc--------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeecc
Q 019672 147 ACFLAVPAST-TKGSVLVYNVMELHS--------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRR 215 (337)
Q Consensus 147 ~~~la~~~~~-~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~~ 215 (337)
|.++|++... ....|.+|.-...+. .....|..++|++|+..||..-.|. |.+|-..+.. +.+++.-
T Consensus 268 G~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 268 GNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred CCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEc
Confidence 7899977531 134566666432221 1126799999999999999988775 6999987764 2333432
Q ss_pred CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCC--Ccc--------------cccccccccccc--ee
Q 019672 216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRG--GRT--------------SSILGSILPESV--NE 277 (337)
Q Consensus 216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~--~~~--------------~~~~~~~~~~~~--~~ 277 (337)
.. ...+..+.|+|... ..|......|.+..++..-....... ... ..+.....|..- ..
T Consensus 346 ~~-~~~~~~~~Wdpe~p--~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 346 SS-SESVNFVKWDPEKP--LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred cC-CCCCCceEECCCCC--CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 21 22345589999876 37888888788877665432221100 000 011112222211 11
Q ss_pred ecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 278 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 278 ~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
+- . ..-++.+++.+.+..+++...||.+.+|.++...
T Consensus 423 l~-~---~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 423 LE-L---PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred Ec-C---CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 10 0 0113444556666779999999999999986653
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.51 E-value=0.00037 Score=60.29 Aligned_cols=209 Identities=13% Similarity=0.074 Sum_probs=123.9
Q ss_pred EEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE
Q 019672 12 FVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR 89 (337)
Q Consensus 12 ~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~ 89 (337)
++.|.+ ++.++.+....+ +..|+..+++...... ....-+.+....+.++++.. +.+.++|+.+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PGPNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SSEEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CCCceEEEEccCCEEEEEEc--------CceEEEecCCCcEEE
Confidence 578888 667677765554 6888988876543222 22222333323344444432 456666999886544
Q ss_pred EEEc---C---CceeEEEEcCCeEEEEE-C----------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 90 ELNF---L---TSILAVRLNKKRLVIVL-R----------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 90 ~~~~---~---~~v~~i~~~~~~~~v~~-d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
.... . ....++.+++++.+..+ . +.+..++.. ++........ .....+++++++..|.+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~---~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL---GFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE---SSEEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc---ccccceEECCcchheee
Confidence 3332 1 25678889887754443 1 456777766 4433222211 12234556677776665
Q ss_pred cCCCCccEEEEEEccCCcc-------cc---c--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672 153 PASTTKGSVLVYNVMELHS-------HC---E--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~-------~~---~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
+.+ ..+.|..+|+..... .. . +..-.++++.+|++.++....+. |.++|.+ |+.+..+.... .
T Consensus 151 ~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~--~ 225 (246)
T PF08450_consen 151 ADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPV--P 225 (246)
T ss_dssp EET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SS--S
T ss_pred ccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCC--C
Confidence 544 478899998863221 11 1 23788999999998877766676 6799977 88888776542 2
Q ss_pred eEEEEEee-cCCCcccEEEEEe
Q 019672 221 TIFSLSFG-QSMQFQDILVATS 241 (337)
Q Consensus 221 ~i~~l~fs-~dg~~~~~las~s 241 (337)
.+++++|. |+.+ .|...+
T Consensus 226 ~~t~~~fgg~~~~---~L~vTt 244 (246)
T PF08450_consen 226 RPTNCAFGGPDGK---TLYVTT 244 (246)
T ss_dssp SEEEEEEESTTSS---EEEEEE
T ss_pred CEEEEEEECCCCC---EEEEEe
Confidence 58999995 6666 555443
No 281
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=3.9e-07 Score=54.50 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=32.3
Q ss_pred ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
+++.++.. |...|++|+|+|++. +|++++.|++|+|||
T Consensus 2 ~~~~~~~~--h~~~i~~i~~~~~~~---~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG--HSSSINSIAWSPDGN---FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES--SSSSEEEEEEETTSS---EEEEEETTSEEEEEE
T ss_pred eEEEEEcC--CCCcEEEEEEecccc---cceeeCCCCEEEEEC
Confidence 45666642 466799999999998 999999999999997
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=3.9e-05 Score=73.25 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCCCCeEEEEEcCCC-----------CE-EEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEE---ccCC-CEEEEEe
Q 019672 5 SSSYPVFFVSFNQDN-----------SG-FALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEM---LYSS-SLLAIVG 65 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg-----------~~-la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~---~~~~-~~~~~~~ 65 (337)
-|+..|+.+.|.|-. .. ||++.-.| +.+||...+..+...+.+ .+..+++ ...+ ..++.+.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh 132 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH 132 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec
Confidence 456789999997632 12 34444445 799998877655444332 2222232 2233 3444444
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEEEEcCCceeE-EEEc
Q 019672 66 AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-VRLN 103 (337)
Q Consensus 66 ~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~-i~~~ 103 (337)
+ .++|.+||..+|+..-.+.....+.. +.++
T Consensus 133 ~-------ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 133 G-------SSTLVLWNTDTGEKFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred C-------CcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence 4 68999999999988777665554433 4443
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.48 E-value=0.00015 Score=61.79 Aligned_cols=193 Identities=11% Similarity=0.125 Sum_probs=121.0
Q ss_pred EEEcCCCCEEEEEcCCceEEEeCCCC-c-EEEEE----e-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672 13 VSFNQDNSGFALSTKDGFKIFDSSTG-R-LCYER----A-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (337)
Q Consensus 13 ~~fs~dg~~la~g~~~g~~vw~~~~~-~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~ 85 (337)
++.+.||+.||+-.+..+.|-..... . .+-.. + ...-..+++.++...++++.. .++|+++|+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S-------~G~i~vfdl~g- 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES-------TGTIRVFDLMG- 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC-------CCeEEEEeccc-
Confidence 56789999999988888766643322 1 11111 1 123355677788888888765 68999999875
Q ss_pred CEEEEEEc--------CCceeEEEEcC--------CeEEEEE-CCeEEEEECC-----CCeeeeeecCCC-CCceEEEEe
Q 019672 86 TALRELNF--------LTSILAVRLNK--------KRLVIVL-REKTYIYDAN-----TLAILDTIDTVP-NLKGLCAFS 142 (337)
Q Consensus 86 ~~~~~~~~--------~~~v~~i~~~~--------~~~~v~~-d~~i~i~d~~-----~~~~~~~~~~~~-~~~~~~~~~ 142 (337)
..+..+.. ...|.++.|-+ ..+++.. +|.++=|-+. ..+..+++.... .+.++.++.
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 33433321 12455554422 1344443 7766655542 234445554322 356788888
Q ss_pred eCCCccEEEEcCCCCcc---------EEEEEEccCCccc----------------------------------ccCceEE
Q 019672 143 PSLNACFLAVPASTTKG---------SVLVYNVMELHSH----------------------------------CEAPLAA 179 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg---------~v~i~d~~~~~~~----------------------------------~~~~i~~ 179 (337)
.+|...+|.++|...+. -+..|.+.+...- .+..|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 88887888887743211 2556665432110 0156889
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672 180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
|.+||||++||+...+|. |.+|++.+-+...++.
T Consensus 235 mSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSWK 268 (282)
T ss_pred EEECCCCCEEEEEEcCCe-EEEEecCcchhhcccc
Confidence 999999999999999998 5899999887766654
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=0.00041 Score=64.78 Aligned_cols=188 Identities=11% Similarity=0.064 Sum_probs=111.6
Q ss_pred EEEccCCCE-EEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE----CCeEEEEECCCCe
Q 019672 52 VEMLYSSSL-LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDANTLA 124 (337)
Q Consensus 52 ~~~~~~~~~-~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~ 124 (337)
-.+.++++. +++++... ....|.++|+.+++...-...........|+|++ +++.. +..|+++|+.+++
T Consensus 193 p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 456666664 55555420 1458999999988765544555556666788764 44443 3479999997775
Q ss_pred eeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEccCCcccc--cCceEEEEeCCCCCEEEEEeCCC-----
Q 019672 125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSHC--EAPLAAIVLSSNGMYIATASEQG----- 196 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~~--~~~i~~~~~s~dg~~lat~s~dg----- 196 (337)
.. .+..... ......++||+..+++.+.. ....|.+.|+.++.... ........|||||++||..+...
T Consensus 269 ~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 269 LT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 43 3322221 11223466777777766531 12267778887665421 11212358999999998877542
Q ss_pred ---cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC-Cc--EEEEecCC
Q 019672 197 ---TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSPGF 253 (337)
Q Consensus 197 ---~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-g~--v~iw~l~~ 253 (337)
.-|.+.|+.+++. ..+..+. ......|||||+ +|+-.+.+ +. +.+.+++.
T Consensus 346 ~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~---~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGG---SIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCC---EEEEEEccCCcEEEEEEecCC
Confidence 2357788888764 3343321 123578999999 66666544 33 44555543
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.46 E-value=1.1e-05 Score=70.11 Aligned_cols=190 Identities=13% Similarity=0.170 Sum_probs=107.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCC-CC---cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSS-TG---RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
+.++++++++++...|.+|.++| +.=|.+. .. ........+...+..+.|+-..-.+++.| .|. =..|-
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~-----~dk-~~~~h 141 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG-----KDK-QFAWH 141 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec-----ccc-ceEEE
Confidence 56789999999999999999887 3444321 11 11111111222333333333222223322 233 34454
Q ss_pred -CCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEEC--CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 82 -TTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDA--NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 82 -~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
.+.+..+..+.+.....+..+.-....+.. .+.|.+-.+ ....++.++..+ ...+.++++++...++.++. .
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~--~ 217 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGA--S 217 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEecc--c
Confidence 455555555544333322222211222222 334443332 334455555544 44678888888877877776 5
Q ss_pred ccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672 158 KGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 207 (337)
Q Consensus 158 dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~ 207 (337)
|..|.+||+--.+-. |...|..+..-+--+.|.++++||. |-+||++..
T Consensus 218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~~ 272 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNVK 272 (404)
T ss_pred cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccce
Confidence 899999998644321 2366777777777789999999997 579998644
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=0.00014 Score=67.88 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=113.2
Q ss_pred CeEEEEEcCCCCE-EEEEcCC-c---eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 9 PVFFVSFNQDNSG-FALSTKD-G---FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 9 ~v~~~~fs~dg~~-la~g~~~-g---~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
.+....|+|||+. ++..+.. + +.++|+.+++...-... +......+.+++..+++.... ..+..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc----CCCcEEEEEEC
Confidence 6778999999985 5543332 2 57889988865332222 333445678888888776542 12567888899
Q ss_pred CCCCEEEEEEcCCceeEEEEcCCe--EEEEECC----eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672 83 TTGTALRELNFLTSILAVRLNKKR--LVIVLRE----KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
.+++...-.........-.|+|++ ++...+. .|+++|+.+++..+.... .. .. ..++|++..+++....
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~--~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NN--SSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cC--ceECCCCCEEEEEEcC
Confidence 887643322222222344677654 5555533 789999987765333221 11 11 2566778888877642
Q ss_pred Cc-------cEEEEEEccCCccc--cc-CceEEEEeCCCCCEEEEEeCCCc--EEEEEEcCC
Q 019672 157 TK-------GSVLVYNVMELHSH--CE-APLAAIVLSSNGMYIATASEQGT--IIRVFLVSE 206 (337)
Q Consensus 157 ~d-------g~v~i~d~~~~~~~--~~-~~i~~~~~s~dg~~lat~s~dg~--~i~vwd~~~ 206 (337)
.+ ..|.+.|+.++... .. .......|+|||+.|+..+.++. .+.+.++..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 11 36888888766532 11 23345889999998887765432 244566643
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=8.4e-07 Score=76.86 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-----CEEEEEE
Q 019672 18 DNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-----TALRELN 92 (337)
Q Consensus 18 dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-----~~~~~~~ 92 (337)
-|..+++|.+.++-+-|+++|..-.=....++....+.-..++ ++.|. ..+.|...|++.+ .+...+-
T Consensus 224 ~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nL-v~~Gc------RngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 224 MGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNL-VFNGC------RNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred ceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCe-eEecc------cCCcEEEEEeeecccCCCcceEEEE
Confidence 3455778888888888988885432223333333333323343 34443 5789999999864 4566777
Q ss_pred cCCceeEEE---EcCCeEEEEE-CCeEEEEECCCCee---eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672 93 FLTSILAVR---LNKKRLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (337)
Q Consensus 93 ~~~~v~~i~---~~~~~~~v~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d 165 (337)
|++.|+++. ++.+.+++.. +++|++||++--+. +.+++.|.|...-.-+..++.+..++++| +|-.-+||.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G--dDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG--DDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc--CeeEEEEEe
Confidence 888887765 4666666665 89999999986655 77777776654444444455555566555 477777777
Q ss_pred ccCCccccc
Q 019672 166 VMELHSHCE 174 (337)
Q Consensus 166 ~~~~~~~~~ 174 (337)
+.++..+.+
T Consensus 375 l~~ghLl~t 383 (425)
T KOG2695|consen 375 LDSGHLLCT 383 (425)
T ss_pred cccCceeec
Confidence 777666554
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.44 E-value=0.00012 Score=66.79 Aligned_cols=225 Identities=13% Similarity=0.168 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCCCEEEEEcC----------------CceEEEeCCCCcEEEEEeeCCE-----EEEEEccCCCEEEEEeC
Q 019672 8 YPVFFVSFNQDNSGFALSTK----------------DGFKIFDSSTGRLCYERAVGAF-----SIVEMLYSSSLLAIVGA 66 (337)
Q Consensus 8 ~~v~~~~fs~dg~~la~g~~----------------~g~~vw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 66 (337)
..|..+.|+|.+++|.+=+. +.+.|||+.++.+++....... .++.+..+.++.+-+.+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 46889999999999987432 2357999999999887643222 25566666676665544
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEEEc----CCceeEEEEcCC----eEEEEE------CCeEEEEECCCCeeeeeecCC
Q 019672 67 GEQPSLSPRRLCLFNTTTGTALRELNF----LTSILAVRLNKK----RLVIVL------REKTYIYDANTLAILDTIDTV 132 (337)
Q Consensus 67 g~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~i~~~~~----~~~v~~------d~~i~i~d~~~~~~~~~~~~~ 132 (337)
..+.|+++ ++. +....+ ...|....++|. .++.-+ ..++++|.+.....+.+-..
T Consensus 152 --------~sl~i~e~-t~n-~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l- 220 (561)
T COG5354 152 --------SSLYIHEI-TDN-IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL- 220 (561)
T ss_pred --------CeEEEEec-CCc-cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-
Confidence 48999987 332 112111 235666777654 222222 45899999976554433210
Q ss_pred CCCceEEEEeeCCCccEEEEcC---------CCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEe--CCCc
Q 019672 133 PNLKGLCAFSPSLNACFLAVPA---------STTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATAS--EQGT 197 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~la~~~---------~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s--~dg~ 197 (337)
.+ ..-|.+.+++.+.++++-- +-....+.|++++..... .+++|...+|+|.++.+++.+ .+..
T Consensus 221 fk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 221 FK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred Ee-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccc
Confidence 00 0123344444443333210 001356888888743321 248999999999999888766 4544
Q ss_pred EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCC
Q 019672 198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGF 253 (337)
Q Consensus 198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~ 253 (337)
+-++|++.. ...-+..+ .=+.+.|||.++ +++.++-| |.|-||+...
T Consensus 300 -~s~~~lr~N-l~~~~Pe~----~rNT~~fsp~~r---~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 300 -VSVFDLRGN-LRFYFPEQ----KRNTIFFSPHER---YILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred -eeecccccc-eEEecCCc----ccccccccCccc---EEEEecCCccccceEEeccCC
Confidence 578999765 44444322 234578999999 88888777 6799998654
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.42 E-value=0.00049 Score=60.25 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=131.3
Q ss_pred eEEEEEcC-CCCEEEEEcCCc-e-EEEeCCCCcEEEEEee----CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 10 VFFVSFNQ-DNSGFALSTKDG-F-KIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 10 v~~~~fs~-dg~~la~g~~~g-~-~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
.-.++.+| ++..++.+-.-| + .+||..+++....... +-.++-.+..++..+...-.. -....+.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd--~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND--YETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc--cCCCcEEEEEEEC
Confidence 34577888 555577777666 4 8999999987655432 112344566667766554331 1234789999999
Q ss_pred C-CCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-------------------CCeEEEEECCCCeeeeeecCCC--CCce
Q 019672 83 T-TGTALRELNFLT-SILAVRLNKKR--LVIVL-------------------REKTYIYDANTLAILDTIDTVP--NLKG 137 (337)
Q Consensus 83 ~-~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-------------------d~~i~i~d~~~~~~~~~~~~~~--~~~~ 137 (337)
. +-+.+.++.... .--.+.+.+++ ++|+. +-++.+.|..+++++.+...++ +.-.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 556677776443 23344555555 55553 1235556667777666644322 1111
Q ss_pred EEEEeeCCCccEEEEcCCC--------------CccEEEEEEccCCcc-cccCceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672 138 LCAFSPSLNACFLAVPAST--------------TKGSVLVYNVMELHS-HCEAPLAAIVLSSNGMYIATASEQGTIIRVF 202 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~~~~--------------~dg~v~i~d~~~~~~-~~~~~i~~~~~s~dg~~lat~s~dg~~i~vw 202 (337)
+--++.++++..++..-.. .++.++..++..... ...+.|-+|+++++|.++|..|-.|..+-+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 1122223333222211100 011122222211110 1128899999999999999999888888999
Q ss_pred EcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 203 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
|..+++.+..... ..+..|+-.+++ ++++.+. |. ++.+..
T Consensus 245 d~~tg~~~~~~~l----~D~cGva~~~~~----f~~ssG~-G~--~~~~~~ 284 (305)
T PF07433_consen 245 DAATGRLLGSVPL----PDACGVAPTDDG----FLVSSGQ-GQ--LIRLSP 284 (305)
T ss_pred ECCCCCEeecccc----CceeeeeecCCc----eEEeCCC-cc--EEEccC
Confidence 9999998765532 236666666555 5665544 43 444443
No 290
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.41 E-value=0.00017 Score=63.81 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=122.9
Q ss_pred ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeC----CCCCCCCCceEEEEECCCCCEEEEEEcCCc--ee----
Q 019672 29 GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA----GEQPSLSPRRLCLFNTTTGTALRELNFLTS--IL---- 98 (337)
Q Consensus 29 g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~---- 98 (337)
.+.|+|.++++.+-....+-...+.+.++.+.+..++. +..+ -....|.+||.++-++..++..+.. ..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG-~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRG-ERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEE-EEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccc-cceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 46888999998876665544555566677766654432 1000 1234699999999999998877653 11
Q ss_pred --EEEEc--CCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc----
Q 019672 99 --AVRLN--KKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---- 167 (337)
Q Consensus 99 --~i~~~--~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~---- 167 (337)
.+.++ ...+++.. ..+|.|-|+...+.+.++.++. ...+-|.++..+...|+ ||.+.-..+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~---DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCG---DGSLLTVTLDADGK 169 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEET---TSCEEEEEETSTSS
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEec---CCceEEEEECCCCC
Confidence 12333 33344443 4578888888888888886642 12222222222333332 3333333332
Q ss_pred --------------------------------------------CCccccc-----------------CceEEEEeCCCC
Q 019672 168 --------------------------------------------ELHSHCE-----------------APLAAIVLSSNG 186 (337)
Q Consensus 168 --------------------------------------------~~~~~~~-----------------~~i~~~~~s~dg 186 (337)
....... +.-.-+++++..
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 1110000 223446666654
Q ss_pred CEEEEEeC---C------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE-EeCCCcEEEEecCCCcc
Q 019672 187 MYIATASE---Q------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA-TSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 187 ~~lat~s~---d------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las-~s~dg~v~iw~l~~~~~ 256 (337)
++|..--. + |+-|-++|+.+++++.++.. ..++.+|+.|.|.+ .+|.+ ...++.+.|||..+++.
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~--P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDK--PLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS---EEEEEETTTTEEEEEETTT--E
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCC--cEEEEEcCCCCeEEEEeCcCCcE
Confidence 44443221 1 23456779999999988853 34688999999887 35544 45689999999988765
Q ss_pred cC
Q 019672 257 QR 258 (337)
Q Consensus 257 ~~ 258 (337)
.+
T Consensus 325 ~~ 326 (342)
T PF06433_consen 325 VR 326 (342)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.35 E-value=8.9e-07 Score=52.88 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=28.3
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 172 HCEAPLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 172 ~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
.|..+|++|+|+|++++||+++.|++ |++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 35589999999999999999999997 69997
No 292
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.35 E-value=0.00011 Score=62.62 Aligned_cols=147 Identities=12% Similarity=0.187 Sum_probs=94.0
Q ss_pred CccEEEEEEccCCccccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE--eeccCCcceeEE
Q 019672 157 TKGSVLVYNVMELHSHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--SFRRGTYPSTIF 223 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~--~~~~~~~~~~i~ 223 (337)
..|.|.++........+. ....++.|++.|..++++-.+|. +.+-+...+.... +++ .|..+++
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~-~~~v~~t~~~le~vq~wk--~He~E~W 169 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGS-ISGVYETEMVLEKVQTWK--VHEFEAW 169 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCc-EEEEecceeeeeeccccc--ccceeee
Confidence 478888887653322111 22467888999999999999998 4555555444333 443 3466788
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccc-ccceeeee-ccCCCcccCEEE
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP-ADHHVLRN-AFPAGVKRASVS 301 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~-~~~~~~~~~~l~ 301 (337)
...|+.... |.+.+|++|+.+..||++-+++. +|.. ..+..-+. .....+++.+|+
T Consensus 170 ta~f~~~~p--nlvytGgDD~~l~~~D~R~p~~~--------------------i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 170 TAKFSDKEP--NLVYTGGDDGSLSCWDIRIPKTF--------------------IWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred eeecccCCC--ceEEecCCCceEEEEEecCCcce--------------------eeecceeeecceEEEecCCCCCceEE
Confidence 899986655 69999999999999999844331 1111 00100011 111234568999
Q ss_pred EEEeCCcEEEEEEe-------cCCCCeeceEEee
Q 019672 302 VITYNGYFVEYIFS-------INNCCESTWTLDR 328 (337)
Q Consensus 302 ~~~~dg~~~~~~~~-------~~~~~~~~~~~~~ 328 (337)
+|+-|..++.|+.. +.+-+.+.|.+..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EeccccceeeeehhcccCccccCccccceEEEEe
Confidence 99999999999885 1222346787743
No 293
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=1.8e-05 Score=73.60 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=59.2
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
+.|.|++++|+...|+.|+.||+ |.+||...+..... +. .-..+.++|+|+|. ++++|+..|.+.+||+.-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~--ka--~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA--KA--EFIPTLIAWHPDGA---IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee--ee--cccceEEEEcCCCc---EEEEEcCCceEEEEEeec
Confidence 78999999999999999999998 57999977643322 11 23467899999999 999999999999999764
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.34 E-value=1.3e-05 Score=70.86 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=101.3
Q ss_pred EEEEcCCCCEEEEEcCCce-EEEeCCCCc----EE--EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 12 FVSFNQDNSGFALSTKDGF-KIFDSSTGR----LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 12 ~~~fs~dg~~la~g~~~g~-~vw~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
.+..+++++++|++..... .+++..... ++ +........+..+..+...++....| .+..+.+|....
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkag-----D~~~~di~s~~~ 141 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAG-----DVYSFDILSADS 141 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecC-----Cceeeeeecccc
Confidence 3456788888888876553 466554332 21 22233444555566666666555554 567889998877
Q ss_pred CCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672 85 GTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 85 ~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v 161 (337)
+.+.-.+.|-+-++++++++|.-.+.+ |++|+|-.....-.+..+.. ++...+..++.-+ +..|.++| .|++|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~-~~~LlS~s--GD~tl 217 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTD-NYLLLSGS--GDKTL 217 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeecc-CceeeecC--CCCcE
Confidence 777777777788999999887655554 77899877765544555432 2334455555533 44567776 49999
Q ss_pred EEEEccCCccccc
Q 019672 162 LVYNVMELHSHCE 174 (337)
Q Consensus 162 ~i~d~~~~~~~~~ 174 (337)
++||+.+++.+++
T Consensus 218 r~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 218 RLWDITSGKLLDT 230 (390)
T ss_pred EEEecccCCcccc
Confidence 9999999998765
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.27 E-value=1.6e-05 Score=66.60 Aligned_cols=152 Identities=10% Similarity=0.157 Sum_probs=89.2
Q ss_pred ceeEEEEcCCeEEEEE-CCeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEcCCC---CccEEEEEEccCCc
Q 019672 96 SILAVRLNKKRLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMELH 170 (337)
Q Consensus 96 ~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~~ 170 (337)
+..+.....++++++. |+.+.+++.+.... .+.+... ..+....+....+..+.+++.. .-+...+|+++..+
T Consensus 93 p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~--~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~ 170 (319)
T KOG4714|consen 93 PNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSI--HSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK 170 (319)
T ss_pred CcccccccCCceEecCCCceEEEEechHHHhhhhhcccc--cccccccceeecccEEecCCcceEeeccceeeecccccc
Confidence 3344444455566655 78888888764211 1111110 0111111111122244333310 01234455554333
Q ss_pred cc---cc--CceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 171 SH---CE--APLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 171 ~~---~~--~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
.. ++ ..|.+++-+|. .+.+++|++||. +-+||.+....+..+-. .|+++|.-+-|+|... +.|+++++||
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p--~~Lft~sedG 246 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNP--EHLFTCSEDG 246 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHH-HhhhhhhheeccCCCc--hheeEecCCC
Confidence 22 11 55999999995 456777888886 68999998865444433 3577899999999876 5999999999
Q ss_pred cEEEEecCC
Q 019672 245 SLHVFSPGF 253 (337)
Q Consensus 245 ~v~iw~l~~ 253 (337)
.+--||-.+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999764
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=1.4e-06 Score=83.83 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=130.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+...-+|++|+-+.++|++|+-.| +++||+.+|...-....|+ +..++-.-+++.+.+.+.. +.--..+|++
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~-----S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS-----SSPLSALWDA 1174 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc-----cCchHHHhcc
Confidence 456789999999999999999887 6999999997655444444 4455555556666665552 2335678997
Q ss_pred CC-CCEEEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCC--CCceEEEEeeCCCccEEEEcCCC
Q 019672 83 TT-GTALRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPAST 156 (337)
Q Consensus 83 ~~-~~~~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~ 156 (337)
.. +.+.+++.. -.+++|+.. ..++++ .+...+||+.+...+.++-+.. +...-.+.+++|+..++.
T Consensus 1175 ~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----- 1246 (1516)
T ss_pred ccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-----
Confidence 53 444444432 334566542 333444 5688999999987776643221 111113345666666665
Q ss_pred CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672 157 TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
.|| .+||.+....+|. ..-..=.|+|.|..++.-+ .|||+++.+.++.... . .-..|.|+..|.
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~-L---dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS------EIWDMRTFKLLHSVPS-L---DQCAVTFNSTGD 1314 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec------hhhhhHHHHHHhcCcc-c---cceEEEeccCcc
Confidence 355 4799998876665 2122336899999887642 4799999887765531 1 245678999887
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=3.4e-05 Score=74.87 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=117.8
Q ss_pred CCEEEEE-cCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-c
Q 019672 19 NSGFALS-TKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-S 96 (337)
Q Consensus 19 g~~la~g-~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~ 96 (337)
++.+..| -.+.+..+|+.+.++....+...-++.-+..++. ..++|. ..|+|.+-|..+.+.++++..++ .
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr-~lf~G~------t~G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNR-NLFCGD------TRGTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCc-EEEeec------ccceEEeecCCcCceeeeeeccccc
Confidence 3344444 4455678888887766554433322222333333 334443 47899999999999999997665 7
Q ss_pred eeEEEEcCCeEEEEE----------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEc
Q 019672 97 ILAVRLNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV 166 (337)
Q Consensus 97 v~~i~~~~~~~~v~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~ 166 (337)
|.++...++.++.++ |.-|+|||++.++.+.-+..+..+ ...-+.|.-.. .+|+++ ..|+.++-|.
T Consensus 220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S--~sGq~q~vd~ 295 (1118)
T KOG1275|consen 220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTS--QSGQFQFVDT 295 (1118)
T ss_pred eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEe--cccceeeccc
Confidence 888999999888775 557999999998887777665554 22344443333 344444 3689999994
Q ss_pred cCCcc-------cc--cCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 167 MELHS-------HC--EAPLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 167 ~~~~~-------~~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
.+... ++ ...+.++++|++|..+|-|..+|. |.+|-
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 33221 11 155999999999999999999997 69997
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.19 E-value=6.4e-05 Score=73.07 Aligned_cols=167 Identities=15% Similarity=0.207 Sum_probs=117.1
Q ss_pred CceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
.+.+...|+.+.+......... .|.-+..+...+.++. .|+|.+-|.++.+.++++..|.+ .+..+... +..|+
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~--siSDfDv~--GNlLi 231 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG--SISDFDVQ--GNLLI 231 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc--ceeeeecc--CCeEE
Confidence 4567778999888877776655 4655555555555544 78999999999999999987755 45566654 44777
Q ss_pred EcCCC-------CccEEEEEEccCCccccc----CceEEEEeCCC-CCEEEEEeCCCcEEEEEE---cCCCc-eeEeecc
Q 019672 152 VPAST-------TKGSVLVYNVMELHSHCE----APLAAIVLSSN-GMYIATASEQGTIIRVFL---VSEAT-KSYSFRR 215 (337)
Q Consensus 152 ~~~~~-------~dg~v~i~d~~~~~~~~~----~~i~~~~~s~d-g~~lat~s~dg~~i~vwd---~~~~~-~~~~~~~ 215 (337)
++|.. -|.-|+|||++..+.+.. ..-.-+.|.|. -..+|.+|..|. ..+-| +.+.. .++-+
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq-~q~vd~~~lsNP~~~~~~v-- 308 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQ-FQFVDTATLSNPPAGVKMV-- 308 (1118)
T ss_pred EeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccc-eeeccccccCCCccceeEE--
Confidence 77732 367799999998876532 22245677775 347888888897 47888 32221 11111
Q ss_pred CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
......+..+.+|++|+ .||.|..+|.|++|.
T Consensus 309 ~p~~s~i~~fDiSsn~~---alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 NPNGSGISAFDISSNGD---ALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCcceeEEecCCCc---eEEEecccCcEeeec
Confidence 11223488999999999 999999999999997
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.18 E-value=7.4e-05 Score=62.70 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCC-
Q 019672 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSS- 184 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~- 184 (337)
-+..+.|+++..+.+.. .......+.+++.+|..+.+.++|. .||.+.+||.+.... .|+.+|+.+-|+|
T Consensus 158 ~d~~~a~~~~p~~t~~~--~~~~~~~v~~l~~hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIP--SKKALDAVTALCSHPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ccceeeecccccccccc--cccccccchhhhCCcccccEEEEec-CCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 45667777754332211 1112234677777777777776665 699999999987753 3669999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcC
Q 019672 185 NGMYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 185 dg~~lat~s~dg~~i~vwd~~ 205 (337)
++..|.++++||.++ -||..
T Consensus 235 ~p~~Lft~sedGslw-~wdas 254 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLW-HWDAS 254 (319)
T ss_pred CchheeEecCCCcEE-EEcCC
Confidence 677999999999864 78875
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=3.1e-05 Score=69.55 Aligned_cols=189 Identities=9% Similarity=0.096 Sum_probs=126.3
Q ss_pred CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE----EcCCceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeee
Q 019672 57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL----NFLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDT 128 (337)
Q Consensus 57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~ 128 (337)
..+++..++ -|+.++.|--..-.-+.-+ .+...|..+..+-++.+.++ |..++++|+.+...+.-
T Consensus 19 ka~fiiqAS-------lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 19 KAKFIIQAS-------LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred hhheEEeee-------cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 345555554 4899999975432222111 22346677777777776665 67999999987766655
Q ss_pred ecCCCCCceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCc-------ccccCceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672 129 IDTVPNLKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELH-------SHCEAPLAAIVLSSNGMYIATASEQGTIIR 200 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~-------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~ 200 (337)
+....-|...+.+...++ -..+|.+.. .+|.+.|+|-.... ..|..||.++.++|-+.-+++....|. |.
T Consensus 92 iKL~~lPg~a~wv~skGd~~s~IAVs~~-~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VE 169 (558)
T KOG0882|consen 92 IKLVDLPGFAEWVTSKGDKISLIAVSLF-KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VE 169 (558)
T ss_pred cccccCCCceEEecCCCCeeeeEEeecc-cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eE
Confidence 555444545544443332 335666555 68999999966433 235599999999999999988887785 78
Q ss_pred EEEcCC------CceeEeeccC-------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672 201 VFLVSE------ATKSYSFRRG-------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 201 vwd~~~------~~~~~~~~~~-------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~ 257 (337)
-|..+. .+....++.. .......++.|+|+|. .+++-+.|..|+++++++++-.
T Consensus 170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---QISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eecCCCcccCccccccccccccchhhcccccccCccceEEccccC---cccccCcccEEEEEEeccchhh
Confidence 998862 1111111110 1123478999999999 9999999999999999887643
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=0.00021 Score=68.53 Aligned_cols=293 Identities=16% Similarity=0.095 Sum_probs=165.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeC--CEEEEEEccCC----------CEEEEEeCCCCCCCC
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG--AFSIVEMLYSS----------SLLAIVGAGEQPSLS 73 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~g~~~~~~ 73 (337)
+...-..+.|+|.| ++|-|+-.-+.|-|..+.+.+.....+ .+..+.+.+.+ ..+.+.++. -
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~ 87 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----I 87 (1062)
T ss_pred CcccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc-----c
Confidence 34446788999987 577788777888898887777655443 34445543311 223333332 4
Q ss_pred CceEEEEECCCCCEEEEEEcCC-ceeEEEEcC------CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672 74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNK------KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~------~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
.|+|.+||...+..+..+.++. ++.++.|-+ +.+++.. ...+.+|+..+|+.+....-.. .-+.++..+|
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DP 165 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDP 165 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCC
Confidence 6899999999998888887664 777777632 2333333 6799999999998887765333 3455677665
Q ss_pred C-ccEEEEcCCCCccEEEEEEccCCcc-----------------cc-----------c---------CceEEEEeCCCCC
Q 019672 146 N-ACFLAVPASTTKGSVLVYNVMELHS-----------------HC-----------E---------APLAAIVLSSNGM 187 (337)
Q Consensus 146 ~-~~~la~~~~~~dg~v~i~d~~~~~~-----------------~~-----------~---------~~i~~~~~s~dg~ 187 (337)
- ..+++..|+ .|.|.+-+....+. .| + .....++|+|.-+
T Consensus 166 fd~rh~~~l~s--~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 166 FDSRHFCVLGS--KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCcceEEEEcc--CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 2 334444442 56666655421110 00 0 1123467788544
Q ss_pred EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccc
Q 019672 188 YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL 267 (337)
Q Consensus 188 ~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~ 267 (337)
-+.-..--.. +.|+|++-.+.+.........+++ +.+-|+++ .+.|.+.-.||.+.||--+...+.-+ .+...+
T Consensus 244 n~lfi~~pre-llv~dle~~~~l~vvpier~~akf--v~vlP~~~-rd~LfclH~nG~ltirvrk~~~~~f~--~~~~~l 317 (1062)
T KOG1912|consen 244 NILFITFPRE-LLVFDLEYECCLAVVPIERGGAKF--VDVLPDPR-RDALFCLHSNGRLTIRVRKEEPTEFK--KPNASL 317 (1062)
T ss_pred ceEEEEeccc-eEEEcchhhceeEEEEeccCCcce--eEeccCCC-cceEEEEecCCeEEEEEeeccCcccc--ccchhh
Confidence 2222222223 469999988887766433222333 55556655 35899999999999997554222111 011111
Q ss_pred cccccccceeecccccc-eeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 268 GSILPESVNEVLDPADH-HVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 268 ~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
..-+..++..+-..... ...-+.+|.. .+.+.+.-++|...+|++..
T Consensus 318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~--~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEFRPVIGASCPST--PSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred ccccccceEEEeechhcccceeecCCCC--hhhhhhhhhcchhHHHhhhc
Confidence 11222332222221111 0111222222 23455667788888888863
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=7.4e-06 Score=71.14 Aligned_cols=141 Identities=6% Similarity=0.101 Sum_probs=92.6
Q ss_pred eEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---------cccCc
Q 019672 106 RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---------HCEAP 176 (337)
Q Consensus 106 ~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---------~~~~~ 176 (337)
++.+.++..+-+-|+.++-. +.+.+. ..+.++.+.....++.. |. ..|.|..+|++.... -|.+.
T Consensus 227 hfs~G~sqqv~L~nvetg~~-qsf~sk---sDVfAlQf~~s~nLv~~-Gc-RngeI~~iDLR~rnqG~~~~a~rlyh~Ss 300 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ-QSFQSK---SDVFALQFAGSDNLVFN-GC-RNGEIFVIDLRCRNQGNGWCAQRLYHDSS 300 (425)
T ss_pred eecccccceeEEEEeecccc-cccccc---hhHHHHHhcccCCeeEe-cc-cCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence 34455577888888887632 233332 24566666554445544 44 589999999986532 13478
Q ss_pred eEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCce---eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 177 LAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 177 i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
|+++..-. ++++|.+.+.+|+ |++||.+--++ +..+..+.....-.-+-..+... .++++++|...+||.++
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg---~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG---SIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccc---eEEEccCeeEEEEEecc
Confidence 88887665 7788999999998 79999986665 65553221111111123345555 79999999999999998
Q ss_pred CCcc
Q 019672 253 FAIN 256 (337)
Q Consensus 253 ~~~~ 256 (337)
.+.-
T Consensus 377 ~ghL 380 (425)
T KOG2695|consen 377 SGHL 380 (425)
T ss_pred cCce
Confidence 6543
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.14 E-value=0.0016 Score=57.13 Aligned_cols=181 Identities=14% Similarity=0.217 Sum_probs=113.0
Q ss_pred EEEEcCCCCEEEEEcCC-----c-eEEEeCC-CCcEEEEEeeCCEE--EEEEccCCCEEEEEeCCCC--C---------C
Q 019672 12 FVSFNQDNSGFALSTKD-----G-FKIFDSS-TGRLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQ--P---------S 71 (337)
Q Consensus 12 ~~~fs~dg~~la~g~~~-----g-~~vw~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~--~---------~ 71 (337)
.-.|++||++|.+..++ | +-|||.. +.+.+-++..+++. -+.+.++...+++.-||-. | .
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 35799999999887553 3 4899998 55666666554443 1334556656666555422 1 1
Q ss_pred CCCceEEEEECCCCCEEEEEEcC----C-ceeEEEEcCCeEEEEE---CC-------eEEEEECCCCeeeeeecCCCC--
Q 019672 72 LSPRRLCLFNTTTGTALRELNFL----T-SILAVRLNKKRLVIVL---RE-------KTYIYDANTLAILDTIDTVPN-- 134 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~~~~~~~~~----~-~v~~i~~~~~~~~v~~---d~-------~i~i~d~~~~~~~~~~~~~~~-- 134 (337)
..+-.+.+-|..+|+.+.+...+ . .|.-++++.++.++.. .+ -+.+++-. +.+..+..+..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHH
Confidence 34456788889999988775542 2 6777888887766654 11 24444433 22333322211
Q ss_pred ---CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCc
Q 019672 135 ---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGT 197 (337)
Q Consensus 135 ---~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~ 197 (337)
...+-+++.++++.++++++- .-|.+.+||..+++.+.. ..+..++-.+++ +++|.+ .|.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSP-RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECC-CCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-Ccc
Confidence 123446666677777776664 578999999999987654 556777777776 565544 454
No 304
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.12 E-value=0.00051 Score=58.77 Aligned_cols=140 Identities=11% Similarity=0.089 Sum_probs=86.3
Q ss_pred CCeEEEEECCCCeeeeeecCCCC----CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc-------ccccCceEEE
Q 019672 112 REKTYIYDANTLAILDTIDTVPN----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-------SHCEAPLAAI 180 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-------~~~~~~i~~~ 180 (337)
.+.|.+|..........++.... .....++.+++-+..+++.. .+|.+.+-+..... ..|+.++.-+
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~--s~G~~~~v~~t~~~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD--SRGSISGVYETEMVLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc--CCCcEEEEecceeeeeecccccccceeeeee
Confidence 67888887654433333322111 11123334444444566655 47888855443322 2345778888
Q ss_pred EeCC-CCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672 181 VLSS-NGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 181 ~~s~-dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~ 257 (337)
.|+. +.+.+.+|++||. +.-||++ .++.+..-.+ .|..-|.++.=||... .++++|+-|..|++||.+.-.+|
T Consensus 172 ~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i~~n~k-vH~~GV~SI~ss~~~~--~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFIWHNSK-VHTSGVVSIYSSPPKP--TYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ecccCCCceEEecCCCce-EEEEEecCCcceeeecce-eeecceEEEecCCCCC--ceEEEeccccceeeeehhcccCc
Confidence 8876 4468889999998 5899999 3444433111 2344588887775533 39999999999999998754443
No 305
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.0018 Score=58.35 Aligned_cols=215 Identities=15% Similarity=0.153 Sum_probs=119.1
Q ss_pred ceEEEeCCCCcEEEEEeeC--C--EEEEEEccCC-----CEEEEEeCCC----CCCCCCceEEEEECCCC-------CEE
Q 019672 29 GFKIFDSSTGRLCYERAVG--A--FSIVEMLYSS-----SLLAIVGAGE----QPSLSPRRLCLFNTTTG-------TAL 88 (337)
Q Consensus 29 g~~vw~~~~~~~~~~~~~~--~--~~~~~~~~~~-----~~~~~~~~g~----~~~~~d~~v~iwd~~~~-------~~~ 88 (337)
.+++.|..+.+.+...... + .....+.+.. .-++++|.+- .+....|.|.++++... +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 3688888888776544331 1 1122233232 3344444331 11112389999999884 234
Q ss_pred EEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE--E
Q 019672 89 RELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY--N 165 (337)
Q Consensus 89 ~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~--d 165 (337)
.+...+++|.++..-.++++++..+.|.+|++...+ ....-. ...+..++++...++ +++++.. ...+.++ +
T Consensus 83 ~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~~~~--~I~vgD~--~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSVFKN--YILVGDA--MKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEEETT--EEEEEES--SSSEEEEEEE
T ss_pred EEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhhe-ecceEEEEEEecccc--EEEEEEc--ccCEEEEEEE
Confidence 456778899999887888888889999999997776 332221 122235566665544 7777663 4556665 4
Q ss_pred ccCCcc--cc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-------Cc-eeEeeccCCcceeEEEE---Eee
Q 019672 166 VMELHS--HC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-------AT-KSYSFRRGTYPSTIFSL---SFG 228 (337)
Q Consensus 166 ~~~~~~--~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-------~~-~~~~~~~~~~~~~i~~l---~fs 228 (337)
....+. +. ...++++.|-+|++.++.+..+|. +.++.... +. .+.....-+....|+++ ++.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 322211 11 155888888867678999999998 46877652 22 22222111223346666 555
Q ss_pred cC--CCc---ccEEEEEeCCCcEEEE
Q 019672 229 QS--MQF---QDILVATSSSGSLHVF 249 (337)
Q Consensus 229 ~d--g~~---~~~las~s~dg~v~iw 249 (337)
|. +.. ...++-++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 52 220 0148888899998744
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.11 E-value=0.004 Score=62.89 Aligned_cols=270 Identities=16% Similarity=0.148 Sum_probs=152.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
+..|.++.|-.++..+.+++..| +.+=|.++..... ..-..++...++.++...++++++ ..+|.+- ...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~-------~~tll~m-T~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG-------RQTLLFM-TKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC-------CcEEEEE-ecc
Confidence 36899999999998888887777 4555877765433 223367777888888899999987 4555443 222
Q ss_pred CCEEEEEEc------CCceeEEEEcCCeEEE-EECCeEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCccEEEEcC--
Q 019672 85 GTALRELNF------LTSILAVRLNKKRLVI-VLREKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPA-- 154 (337)
Q Consensus 85 ~~~~~~~~~------~~~v~~i~~~~~~~~v-~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-- 154 (337)
-.++.+... .+....+-|-.....+ +..++....+... .+....+..+. .-..+++-+|+.++|+..
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~---~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD---HKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc---CCceEEEccCCcEEEEEEEe
Confidence 233322211 1122223332211111 1111111111100 01111111111 124567778888888732
Q ss_pred CCCc-cEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEe---CCCcEEEEEEcCCCceeEee--ccCCcceeEE
Q 019672 155 STTK-GSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSF--RRGTYPSTIF 223 (337)
Q Consensus 155 ~~~d-g~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s---~dg~~i~vwd~~~~~~~~~~--~~~~~~~~i~ 223 (337)
+..+ ..|+|||-. +...+ .+.=.+++|-|.|.++|+-- +|+. |.+|.- +|-.-..| +......+|.
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr-NGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER-NGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec-CCccccccccCCcccccchh
Confidence 1123 789999976 33222 25567899999999999864 3445 457763 34322222 2222223489
Q ss_pred EEEeecCCCcccEEEE---EeCCCcEEEEecCCCcccCCCCcccccccc--cccccceeecccccceeeeeccCCCcccC
Q 019672 224 SLSFGQSMQFQDILVA---TSSSGSLHVFSPGFAINQRRGGRTSSILGS--ILPESVNEVLDPADHHVLRNAFPAGVKRA 298 (337)
Q Consensus 224 ~l~fs~dg~~~~~las---~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 298 (337)
.++|+.++. .||+ ......|++|-+..- ..|+.. ..|....-+|++... .
T Consensus 294 ~L~Wns~sd---iLAv~~~~~e~~~v~lwt~~Ny---------hWYLKq~l~~~~~~~~~W~p~~~-------------~ 348 (1265)
T KOG1920|consen 294 ELAWNSNSD---ILAVVTSNLENSLVQLWTTGNY---------HWYLKQELQFSQKALLMWDPVTE-------------K 348 (1265)
T ss_pred eeeecCCCC---ceeeeecccccceEEEEEecCe---------EEEEEEEEeccccccccccCCCc-------------e
Confidence 999999998 8888 444455999986532 122222 123333468888542 5
Q ss_pred EEEEEEeCCcEEEEEEe
Q 019672 299 SVSVITYNGYFVEYIFS 315 (337)
Q Consensus 299 ~l~~~~~dg~~~~~~~~ 315 (337)
+|++.+.+|.+.++.+-
T Consensus 349 ~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eEEEEecCCcEEEEEEE
Confidence 78888888888887763
No 307
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=2.4e-05 Score=72.01 Aligned_cols=198 Identities=11% Similarity=0.134 Sum_probs=119.9
Q ss_pred CCCCCeEEE-EEcCCCCEEEEEcCCceEEEeCCCC-------cEE--EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672 5 SSSYPVFFV-SFNQDNSGFALSTKDGFKIFDSSTG-------RLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (337)
Q Consensus 5 ~~~~~v~~~-~fs~dg~~la~g~~~g~~vw~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (337)
+|.+.|+.+ +.+...+++.++.++.+++|.+.+. ... |..+..++-.+.+..+...+ ++ .|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i--~S-------cD 803 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI--AS-------CD 803 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee--ee-------cc
Confidence 455556555 3455556666666677899987653 112 22233333333333333333 22 48
Q ss_pred ceEEEEECCCCCEEEEEEc---CC---ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCC--CCCc-eEEEEe
Q 019672 75 RRLCLFNTTTGTALRELNF---LT---SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV--PNLK-GLCAFS 142 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~---~~---~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~--~~~~-~~~~~~ 142 (337)
+.|.+||.-.++++..+.- ++ .|.++.--...++++. ..+++++|-+..+-..+++.. +.|. ..-+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8999999888877664321 22 3444432234455544 679999999988766665432 3332 233666
Q ss_pred eCCCccEEEEcCCCCccEEEEEEccCCccccc-Cce----EEEEeCCCCCEEEEEeCCCcEEEE-EEcCCCceeEeecc
Q 019672 143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCE-APL----AAIVLSSNGMYIATASEQGTIIRV-FLVSEATKSYSFRR 215 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-~~i----~~~~~s~dg~~lat~s~dg~~i~v-wd~~~~~~~~~~~~ 215 (337)
..+.+..+|.+- ..|.|.+.|.++++.... .|. ..++ .|..+.||....|.++ -| |..-+|....+.+.
T Consensus 884 Va~~GN~lAa~L--SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl-aVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 884 VADKGNKLAAAL--SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL-AVNWHALDGIMHLQDKP 958 (1034)
T ss_pred eccCcchhhHHh--cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee-EeeehhcCCeeeeccCC
Confidence 666777888776 489999999999986643 222 2222 3666788888888774 57 98888776555543
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.11 E-value=0.005 Score=53.19 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=110.6
Q ss_pred CCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEc--CCeEEEEECCeEEEEECCCCeeeeeecC--CC
Q 019672 58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN--KKRLVIVLREKTYIYDANTLAILDTIDT--VP 133 (337)
Q Consensus 58 ~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~--~~~~~v~~d~~i~i~d~~~~~~~~~~~~--~~ 133 (337)
.+.+.++.. ..+.|..||..+++. ..+..+. ...+.+. .+.++++..+.+.++|+.+++....... ..
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence 444555554 468999999987654 3345555 5555555 4566677777888889988855433322 12
Q ss_pred -CCceEEEEeeCCCccEEEEcCCCC----c--cEEEEEEccCCccc--c--cCceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672 134 -NLKGLCAFSPSLNACFLAVPASTT----K--GSVLVYNVMELHSH--C--EAPLAAIVLSSNGMYIATASEQGTIIRVF 202 (337)
Q Consensus 134 -~~~~~~~~~~~~~~~~la~~~~~~----d--g~v~i~d~~~~~~~--~--~~~i~~~~~s~dg~~lat~s~dg~~i~vw 202 (337)
.......+..++++.+.++..... . |.|..++.. ++.. . ....+.++|+|||+.|..+......|..+
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEE
Confidence 334555677778887666543110 1 667777777 3321 1 16679999999999776554433336777
Q ss_pred EcCCCce-------eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 203 LVSEATK-------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 203 d~~~~~~-------~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
++..... +..+.. .....-.+++..+|+ +.++.-..+.|.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~~g~pDG~~vD~~G~---l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPG--GPGYPDGLAVDSDGN---LWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SS--SSCEEEEEEEBTTS----EEEEEETTTEEEEEETT
T ss_pred eccccccceeeeeeEEEcCC--CCcCCCcceEcCCCC---EEEEEcCCCEEEEECCC
Confidence 8753221 122221 112367899999998 77777788899999965
No 309
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.08 E-value=0.0024 Score=61.02 Aligned_cols=187 Identities=17% Similarity=0.141 Sum_probs=102.0
Q ss_pred EEEEEcC-CceEEEeCCCCcEEEEEeeCCE------EEEE--EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672 21 GFALSTK-DGFKIFDSSTGRLCYERAVGAF------SIVE--MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL 91 (337)
Q Consensus 21 ~la~g~~-~g~~vw~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~ 91 (337)
.+.+++. ..+.-+|..+++++...+.... ..+. ........++++. .++.|.-+|.++|+.+-+.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~------~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT------FDGRLVALDAETGKQVWKF 136 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec------CCCeEEEEECCCCCEeeee
Confidence 3444444 4467789999988766543211 0000 0111112334443 4889999999999998777
Q ss_pred EcCCc------ee-EEEEcCCeEEEEE----------CCeEEEEECCCCeeeeeecCCCCCc-----------------e
Q 019672 92 NFLTS------IL-AVRLNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLK-----------------G 137 (337)
Q Consensus 92 ~~~~~------v~-~i~~~~~~~~v~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-----------------~ 137 (337)
....+ +. ...+..+.+++.. ++.+..+|..+++.+..+....... .
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 65443 11 1223344455443 4678899999998887765421100 0
Q ss_pred -E-EEEeeCCCccEEEEcCCC----------------CccEEEEEEccCCccccc-----CceE------EEEe----CC
Q 019672 138 -L-CAFSPSLNACFLAVPAST----------------TKGSVLVYNVMELHSHCE-----APLA------AIVL----SS 184 (337)
Q Consensus 138 -~-~~~~~~~~~~~la~~~~~----------------~dg~v~i~d~~~~~~~~~-----~~i~------~~~~----s~ 184 (337)
+ ...+.++.+..++++..+ .++.|.-+|+.+++..-+ .... ...+ .-
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 011112222334443310 123788889888876522 1110 0011 12
Q ss_pred CCC---EEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672 185 NGM---YIATASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 185 dg~---~lat~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
+|. .++.++.+|. +...|.++|+.+.+..
T Consensus 297 ~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~ 328 (488)
T cd00216 297 DGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP 328 (488)
T ss_pred CCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence 343 5777888897 5789999999987664
No 310
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.08 E-value=0.0066 Score=58.09 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=125.4
Q ss_pred CEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEE-----EE-EEccCCCEEEEEeCCCCCC---CCCceEEEEECCCCCEEE
Q 019672 20 SGFALSTKDG-FKIFDSSTGRLCYERAVGAFS-----IV-EMLYSSSLLAIVGAGEQPS---LSPRRLCLFNTTTGTALR 89 (337)
Q Consensus 20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~g~~~~---~~d~~v~iwd~~~~~~~~ 89 (337)
..+.+++.++ +.-+|.++|+++...+..... +. ........+ +++...... ..++.|...|.++|+.+-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v-~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLV-IIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEE-EEeccccccccCCCCcEEEEEECCCCceee
Confidence 4566666555 588899999988776543210 10 001112333 333210000 136789999999999887
Q ss_pred EEEcCCc---------------------ee-EEEEc--CCeEEEEE-CC------------------eEEEEECCCCeee
Q 019672 90 ELNFLTS---------------------IL-AVRLN--KKRLVIVL-RE------------------KTYIYDANTLAIL 126 (337)
Q Consensus 90 ~~~~~~~---------------------v~-~i~~~--~~~~~v~~-d~------------------~i~i~d~~~~~~~ 126 (337)
++....+ +. ...++ .+.+++.+ ++ .+.-+|..+++.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 7654211 10 12222 34455554 32 6899999999988
Q ss_pred eeecCCCCCc---------eEEEEe-eCCCc-cEEEEcCCCCccEEEEEEccCCcccccCce--EEEEeCCCCCEEEEE-
Q 019672 127 DTIDTVPNLK---------GLCAFS-PSLNA-CFLAVPASTTKGSVLVYNVMELHSHCEAPL--AAIVLSSNGMYIATA- 192 (337)
Q Consensus 127 ~~~~~~~~~~---------~~~~~~-~~~~~-~~la~~~~~~dg~v~i~d~~~~~~~~~~~i--~~~~~s~dg~~lat~- 192 (337)
..++...+.. .+..+. .++.. ..++.+. .+|.+...|..+++.+-+..+ ..++.+| +...+.+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~~~~~~~~-~~vyv~~~ 346 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEVEQPMAYDP-GLVYLGAF 346 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEeeccccccCC-ceEEEccc
Confidence 7765332110 011111 11111 2344444 489999999999987654222 2345555 3322211
Q ss_pred ----------------eCCCcEEEEEEcCCCceeEeeccCCcc------eeE--EEEEeecCCCcccEEEEEeCCCcEEE
Q 019672 193 ----------------SEQGTIIRVFLVSEATKSYSFRRGTYP------STI--FSLSFGQSMQFQDILVATSSSGSLHV 248 (337)
Q Consensus 193 ----------------s~dg~~i~vwd~~~~~~~~~~~~~~~~------~~i--~~l~fs~dg~~~~~las~s~dg~v~i 248 (337)
..+|. +.-.|+.+|+.+.+...+... .+. ..++. .+. .|.+++.||.|+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~---~v~~g~~dG~l~a 420 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN---LVFAGAADGYFRA 420 (488)
T ss_pred cccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC---eEEEECCCCeEEE
Confidence 13455 457788888888776543111 111 11222 345 7899999999999
Q ss_pred EecCCCcc
Q 019672 249 FSPGFAIN 256 (337)
Q Consensus 249 w~l~~~~~ 256 (337)
+|.++++.
T Consensus 421 ld~~tG~~ 428 (488)
T cd00216 421 FDATTGKE 428 (488)
T ss_pred EECCCCce
Confidence 99988764
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.0014 Score=60.83 Aligned_cols=229 Identities=16% Similarity=0.205 Sum_probs=135.9
Q ss_pred EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE
Q 019672 12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR 89 (337)
Q Consensus 12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~ 89 (337)
-..||.|++++|--..+++.||+..+..++-.. ...++...++++-++.+|+=+-..+ ...-++.|-.+-+++.++
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~--~~parvtL~evPs~~~iR 387 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN--NIPARVTLMEVPSKREIR 387 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc--CCcceEEEEecCccceee
Confidence 358999999999888899999998875544322 2345555566666777776654211 234567777777777666
Q ss_pred EEEcCCceeE--EEE--cCCeEEEEECC-----------eEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672 90 ELNFLTSILA--VRL--NKKRLVIVLRE-----------KTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (337)
Q Consensus 90 ~~~~~~~v~~--i~~--~~~~~~v~~d~-----------~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~ 153 (337)
+-... .|.+ +.| +++++++-.|. .+.|+.++.... +..+.. ...+.++++.|.+..+++-
T Consensus 388 t~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 388 TKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred eccce-eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeeccCCCeEEEE
Confidence 54322 2322 334 34555554421 344555543321 112221 1235667766666555433
Q ss_pred -CCCCccEEEEEEccCC-cc---c---ccCceEEEEeCCCCCEEEEEeC---CCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672 154 -ASTTKGSVLVYNVMEL-HS---H---CEAPLAAIVLSSNGMYIATASE---QGTIIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 154 -~~~~dg~v~i~d~~~~-~~---~---~~~~i~~~~~s~dg~~lat~s~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
|.....++.+|-+.+. .. + .+...+.+-|+|.|+++|.+.- .|. +..+|+....... .....| ...
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~-~~~~eh-~~a 540 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKD-TASPEH-FAA 540 (698)
T ss_pred EccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhh-ccCccc-ccc
Confidence 3224567889988732 11 1 1266889999999999988754 455 5788986422211 111111 225
Q ss_pred EEEEeecCCCcccEEEEEeCCCc------EEEEecC
Q 019672 223 FSLSFGQSMQFQDILVATSSSGS------LHVFSPG 252 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~------v~iw~l~ 252 (337)
+.+.|.|.|+ |+.++|.-.. -+||+.+
T Consensus 541 t~veWDPtGR---YvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 541 TEVEWDPTGR---YVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ccceECCCCC---EEEEeeehhhhccccceEEEEee
Confidence 6789999999 9999887543 4566654
No 312
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.01 E-value=0.0074 Score=51.88 Aligned_cols=158 Identities=12% Similarity=0.135 Sum_probs=101.3
Q ss_pred CCCceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672 72 LSPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
+....|+.+|+.+++...+...+... -.+...++.+...+ ++...+||..+.+.+.++.-..+.-++ +.+ ..
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGL---t~d-g~ 140 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGL---TSD-GK 140 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EE---EEC-SS
T ss_pred CCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceEE---EcC-CC
Confidence 34678999999999998888877755 44777788888888 889999999999999888665444444 333 23
Q ss_pred cEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc--
Q 019672 148 CFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-- 215 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-- 215 (337)
.++.+-| ...+..+|..+.+...+ ..++-+.+- +|...|-.=.... |-.-|..+|+.+..+..
T Consensus 141 ~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~-I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 141 RLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR-IVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp CEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE-EEEEETTT-BEEEEEE-HH
T ss_pred EEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe-EEEEeCCCCeEEEEEEhhH
Confidence 4455544 46799999887655432 456667664 6766665555444 45678899987654420
Q ss_pred -------CC----cceeEEEEEeecCCCcccEEEEE
Q 019672 216 -------GT----YPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 216 -------~~----~~~~i~~l~fs~dg~~~~~las~ 240 (337)
.. .....+.+|+.|..+ .+++||
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~--~l~vTG 249 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETD--RLFVTG 249 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTT--EEEEEE
T ss_pred hhhcccccccccccCCeeEeEeEeCCCC--EEEEEe
Confidence 00 123489999998887 244444
No 313
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.00088 Score=63.84 Aligned_cols=221 Identities=11% Similarity=0.132 Sum_probs=128.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC----cE--E---------EEEeeCCEEEEEEccCCCEEEEEeCCC
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG----RL--C---------YERAVGAFSIVEMLYSSSLLAIVGAGE 68 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~----~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~ 68 (337)
+....+.|++||....++|+|+.+|. +|--+++. +. + ...++|...+.-..++.+..-+.+..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD- 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD- 90 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC-
Confidence 44567899999999999999999996 88865432 11 0 11223333333334444333333321
Q ss_pred CCCCCCceEEEEECCCCCEEEEEE---cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeee-eecCCCCCceEEEE
Q 019672 69 QPSLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCAF 141 (337)
Q Consensus 69 ~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~ 141 (337)
.+|-|.+|=+-.|....++. -.+-|.+++|+.++ +.++. ||.|.+=.+...+.-. .++. .-+..+
T Consensus 91 ----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~hv 162 (1189)
T KOG2041|consen 91 ----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLAHV 162 (1189)
T ss_pred ----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----heccce
Confidence 48899999887775443321 12457778886543 44443 7776665554332211 1111 011222
Q ss_pred eeCCCccEEEEcCCCCccEEEEEEccCCccc--cc--------------CceEEEEe--------CCCCCEEEEEeCCCc
Q 019672 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSH--CE--------------APLAAIVL--------SSNGMYIATASEQGT 197 (337)
Q Consensus 142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--~~--------------~~i~~~~~--------s~dg~~lat~s~dg~ 197 (337)
.+++|...+.+.- ..|.+.+||.+..... +. ..|..+.| -||-..||.+-..|.
T Consensus 163 ~ws~D~~~~Lf~~--ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSEDLEQALFKK--ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eecccHHHHHhhh--cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 3445555544443 4789999998653221 10 22444554 358888999999887
Q ss_pred EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672 198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d 243 (337)
+.|-.-.+......+..+ ..|....|+++|. +||+++.+
T Consensus 241 -~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~---vLAvcG~~ 279 (1189)
T KOG2041|consen 241 -MQIMRSENDPEPVVVDTG---MKIVGAKWNHNGA---VLAVCGND 279 (1189)
T ss_pred -ehhhhhcCCCCCeEEecc---cEeecceecCCCc---EEEEccCc
Confidence 466544433333333332 3578899999999 99999887
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.00 E-value=0.0001 Score=70.16 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=101.6
Q ss_pred ceeEEEEcC----CeEEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccC
Q 019672 96 SILAVRLNK----KRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVME 168 (337)
Q Consensus 96 ~v~~i~~~~----~~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~ 168 (337)
.|..+.|++ +.-+|.+ ..+..+|++... .....+..+.+..++..+.++|... .+|+++ .|-.|..||+++
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rS 146 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRS 146 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccC
Confidence 355555653 3444444 456778988432 1122344456667788877766543 567776 588999999998
Q ss_pred Ccccc------cCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEE
Q 019672 169 LHSHC------EAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 169 ~~~~~------~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~ 240 (337)
..... ...-..|+|+- ++..+|+ ..|..|++||++.|. .+..++. +.+.|++++|..--. ..+.+.
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~--s~~~s~ 220 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKY--SEIMSS 220 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhh--hhhccc
Confidence 76432 25667788886 5555554 345568999998765 4555543 466789999875432 268899
Q ss_pred eCCCcEEEEecCCCcc
Q 019672 241 SSSGSLHVFSPGFAIN 256 (337)
Q Consensus 241 s~dg~v~iw~l~~~~~ 256 (337)
+.|++|++||.++..+
T Consensus 221 ~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTT 236 (1081)
T ss_pred CCCCceeeeccccccc
Confidence 9999999999876544
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.00 E-value=0.0056 Score=52.44 Aligned_cols=152 Identities=13% Similarity=0.134 Sum_probs=89.2
Q ss_pred eeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCC-----CceEEEEeeCC-----C--ccEEEEcCCCCccEE
Q 019672 97 ILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSL-----N--ACFLAVPASTTKGSV 161 (337)
Q Consensus 97 v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~--~~~la~~~~~~dg~v 161 (337)
-+.++|+++..+++. .|+|++||+.. ..+..+..... ...+..+.+-+ . ..+++. .+ .|.+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y--~G~L 121 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NY--RGQL 121 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE-ec--ccee
Confidence 467889998766654 67999999965 33444432111 01222222211 1 123333 32 5777
Q ss_pred EEEEccCC-----ccccc--------CceEEEEeCCCCCEEEEEeCC-Cc---------EEEEEEcCCCceeEe------
Q 019672 162 LVYNVMEL-----HSHCE--------APLAAIVLSSNGMYIATASEQ-GT---------IIRVFLVSEATKSYS------ 212 (337)
Q Consensus 162 ~i~d~~~~-----~~~~~--------~~i~~~~~s~dg~~lat~s~d-g~---------~i~vwd~~~~~~~~~------ 212 (337)
+-|-+..+ +..|. ..|+++.++|.-++|+.|+.. .. -+--|-+-++..-+.
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~ 201 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSE 201 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccC
Confidence 76665322 11121 689999999998877776531 11 023565544332110
Q ss_pred --------------e-------ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 213 --------------F-------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 213 --------------~-------~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+ +.+.....|..|..||||+ +||+...+|.|.+|++..-.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccccccccccceeeccceeeeeccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcch
Confidence 0 0111233489999999999 99999999999999997644
No 316
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.94 E-value=0.0084 Score=52.62 Aligned_cols=210 Identities=16% Similarity=0.197 Sum_probs=120.0
Q ss_pred CCCCEEEEEcCCceEEEeC-CCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE------
Q 019672 17 QDNSGFALSTKDGFKIFDS-STGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR------ 89 (337)
Q Consensus 17 ~dg~~la~g~~~g~~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~------ 89 (337)
..++.|++|+++|+.+|+. ...+.....+...+..+.+...-+.+++.+ |++|.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhcccccccccc
Confidence 4678899999999999988 333333333334477777777778777765 5799999976543322
Q ss_pred ---------EEEcCCceeEEE----Ec-CCeEEEEECCeEEEEECCCC-----eeeeeecCCCCCceEEEEeeCCCccEE
Q 019672 90 ---------ELNFLTSILAVR----LN-KKRLVIVLREKTYIYDANTL-----AILDTIDTVPNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 90 ---------~~~~~~~v~~i~----~~-~~~~~v~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (337)
.+.....+..++ .. ...++++...+|.+|..... +..+++..+..+..+ .+.++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i---~~~~~--~i 151 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSI---AFLGN--KI 151 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEE---EEeCC--EE
Confidence 111222344333 11 22455566889998877542 466777665544333 33333 55
Q ss_pred EEcCCCCccEEEEEEccCCcccc-----------------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE--
Q 019672 151 AVPASTTKGSVLVYNVMELHSHC-----------------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY-- 211 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~-----------------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~-- 211 (337)
+.+. .....+.|+.++.... ..++..+.++. +.+|++-.+-| + ..|. .|+...
T Consensus 152 ~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~~~g--~-fv~~-~G~~~r~~ 223 (275)
T PF00780_consen 152 CVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYDNIG--V-FVNK-NGEPSRKS 223 (275)
T ss_pred EEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEecceE--E-EEcC-CCCcCccc
Confidence 5543 3457888887553211 03455555544 46676543322 2 3344 454332
Q ss_pred eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.+.-. ....++++. .. ||++-+.+ .|.||++.++..
T Consensus 224 ~i~W~---~~p~~~~~~--~p---yli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 224 TIQWS---SAPQSVAYS--SP---YLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred EEEcC---CchhEEEEE--CC---EEEEECCC-EEEEEECcCCcE
Confidence 22211 234566775 34 77776664 599999987743
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00031 Score=67.56 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=95.4
Q ss_pred ceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc
Q 019672 96 SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE 174 (337)
Q Consensus 96 ~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~ 174 (337)
.+.+.+++...+...+ +|.+++++.... ....+... +.+.+|.++++++ .||.|.|..+-+.+..++
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~-~~~~~~~s---------~~~~~Gey~asCS--~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGN-PKTNFDHS---------SSILEGEYVASCS--DDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCc-cccccccc---------ccccCCceEEEec--CCCcEEEeeccCCcccee
Confidence 4556667777777777 789999987532 21112111 1156788999998 699999998887776653
Q ss_pred ----CceEEEEeCCC-----CCEEEEEeCCCcEEEEEEcCC-CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 175 ----APLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 175 ----~~i~~~~~s~d-----g~~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
-|+.+++++|| .+.+++|+.-| ++ ++.-.= |.+... ......++|.++.|. |. ++|=++++|
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv-L~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~---lIAWand~G 180 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV-LSERNWLGNKDSV-VLSEGEGPIHSIKWR--GN---LIAWANDDG 180 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EE-EehhhhhcCccce-eeecCccceEEEEec--Cc---EEEEecCCC
Confidence 89999999998 56789999888 54 543210 111111 112234679999997 66 888888887
Q ss_pred cEEEEecCCCcc
Q 019672 245 SLHVFSPGFAIN 256 (337)
Q Consensus 245 ~v~iw~l~~~~~ 256 (337)
|+|||+.+...
T Consensus 181 -v~vyd~~~~~~ 191 (846)
T KOG2066|consen 181 -VKVYDTPTRQR 191 (846)
T ss_pred -cEEEeccccce
Confidence 89999876543
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=0.0096 Score=50.47 Aligned_cols=102 Identities=14% Similarity=0.269 Sum_probs=61.9
Q ss_pred CEEEEEcCCc-eEEEeCCCCcEEEEEeeCC-EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672 20 SGFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (337)
Q Consensus 20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 97 (337)
+++..|+-.+ ++--|..+|++..+...+. +..-.+. -++.+++ +. ..+.+.+.+.++|.....+..-+.|
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~-GC------y~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVL-GC------YSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEE-EE------ccCcEEEEEecchhheeeeeehhhh
Confidence 4566676665 4777888888877654322 2222222 3444333 33 3678999999999877766554443
Q ss_pred eE---EEEcCCeEEEEE-CCeEEEEECCCCeeeeee
Q 019672 98 LA---VRLNKKRLVIVL-REKTYIYDANTLAILDTI 129 (337)
Q Consensus 98 ~~---i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~ 129 (337)
.. +.++...+.+.+ |++.+..|.++...+...
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 22 344555555555 788888888776555443
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00017 Score=64.98 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=144.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-C-ceEEEeCCCCcEEEEEeeCC-EEEEEEccCCC----EEEEEeCCCCCCCCCceEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTK-D-GFKIFDSSTGRLCYERAVGA-FSIVEMLYSSS----LLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~-~-g~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~g~~~~~~d~~v~ 78 (337)
+-..|.+++.+.||.++.+..+ + .+++||+++...+....... -..+++.++++ .++ ++. +.++.+.
T Consensus 52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IA-Vs~-----~~sg~i~ 125 (558)
T KOG0882|consen 52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIA-VSL-----FKSGKIF 125 (558)
T ss_pred HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEE-eec-----ccCCCcE
Confidence 4456778888999999888665 4 47999998875543222211 12234444443 333 333 3688999
Q ss_pred EEECCCCCE-EEE--EEcCCceeEEEEcCCeEEEEE---CCeEEEEECCC------Ceeeeeec-------CCCCCceEE
Q 019672 79 LFNTTTGTA-LRE--LNFLTSILAVRLNKKRLVIVL---REKTYIYDANT------LAILDTID-------TVPNLKGLC 139 (337)
Q Consensus 79 iwd~~~~~~-~~~--~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~------~~~~~~~~-------~~~~~~~~~ 139 (337)
++|-...-+ ..- --+.++|..+.+++-.-.+.+ .|.|.-|.... .++...+. .........
T Consensus 126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred EECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 999765432 221 124568988888765444433 57899998762 11111111 111122235
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc--------------------------------------CceEEEE
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--------------------------------------APLAAIV 181 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------------------------------------~~i~~~~ 181 (337)
++.++|++..+++-+ .|..|++++.++++..+. ..-..+.
T Consensus 206 s~Efsp~g~qistl~--~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLN--PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred ceEEccccCcccccC--cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 677788888888887 589999999988764321 2346788
Q ss_pred eCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC----------------Cccee-------EEEEEeecCCCcccEEE
Q 019672 182 LSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG----------------TYPST-------IFSLSFGQSMQFQDILV 238 (337)
Q Consensus 182 ~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~----------------~~~~~-------i~~l~fs~dg~~~~~la 238 (337)
|+..|++|..|+-=| |+|.++.+++....+.+. .+.+. =..+.|-+|-. +++
T Consensus 284 fdes~~flly~t~~g--ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt---~~c 358 (558)
T KOG0882|consen 284 FDESGNFLLYGTILG--IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPT---IVC 358 (558)
T ss_pred EcCCCCEEEeeccee--EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCe---EEE
Confidence 999999999999887 699999998876544211 00000 01234556655 777
Q ss_pred EEeCCCcEEEE
Q 019672 239 ATSSSGSLHVF 249 (337)
Q Consensus 239 s~s~dg~v~iw 249 (337)
++=..+.+++|
T Consensus 359 ~a~kk~rfylf 369 (558)
T KOG0882|consen 359 TAFKKNRFYLF 369 (558)
T ss_pred eeeecceEEEE
Confidence 77777888888
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.92 E-value=0.0029 Score=60.62 Aligned_cols=154 Identities=7% Similarity=0.031 Sum_probs=89.5
Q ss_pred CCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEe---CCC---------------------
Q 019672 145 LNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATAS---EQG--------------------- 196 (337)
Q Consensus 145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s---~dg--------------------- 196 (337)
+++..+...+. ..+.+.+.|..+.+...+ .....++++|||+++.+.+ +.|
T Consensus 202 nDGk~l~~~~e-y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 202 NDGKDLDDPKK-YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCEeecccc-eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 45555443332 568888889887765443 4456788999999988776 211
Q ss_pred ---------------cEEEEEEcCC-----CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 197 ---------------TIIRVFLVSE-----ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 197 ---------------~~i~vwd~~~-----~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
..+.+.|..+ .+.+..+.-+ ...+.|++||||++ .++++..+++|.|.|+++.++
T Consensus 281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGky--lyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKY--FIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCE--EEEeCCCCCcEEEEEChhhhh
Confidence 1135666665 2334434322 22567899999993 455556689999999987543
Q ss_pred cCC--CCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 257 QRR--GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 257 ~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
.-. ........+.. ...-+++ +..+..+++...+.-.|..+.+|+++.
T Consensus 356 ~~~~~~~~~~~vvaev---------evGlGPL---HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEP---------ELGLGPL---HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEee---------ccCCCcc---eEEECCCCCEEEeEeecceeEEEehHH
Confidence 110 00000001000 0001111 122344567777888899999999976
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.0067 Score=56.82 Aligned_cols=213 Identities=10% Similarity=0.080 Sum_probs=111.9
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672 8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (337)
Q Consensus 8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~ 87 (337)
.....+++||+|+.+++++++...||.....+...... +.. ..+.. .+..++... .++|.|+.--.++.
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~--g~~-~vw~~-~n~yAv~~~-------~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS--GLS-FVWSS-RNRYAVLES-------SSTIKIYKNFKNEV 101 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE---SE-EEE-T-SSEEEEE-T-------TS-EEEEETTEE-T
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc--eeE-EEEec-CccEEEEEC-------CCeEEEEEcCcccc
Confidence 34678999999999999888888999865554433322 222 22222 455555543 57899863222233
Q ss_pred EEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc
Q 019672 88 LRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM 167 (337)
Q Consensus 88 ~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~ 167 (337)
...+..+..+..|.. +.-+.+..++.|.+||..+++.++.+... .+-.+.+++++.++|..+ +..+.|++..
T Consensus 102 ~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t---~~~i~il~~~ 173 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT---KDSIYILKYN 173 (443)
T ss_dssp T-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE----S-SEEEEEE-
T ss_pred ceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe---CCeEEEEEec
Confidence 334444444555544 55555566778999999999999999753 244556777888988886 4567776543
Q ss_pred CC--------------ccccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeeccCCcceeEEEEEeec
Q 019672 168 EL--------------HSHCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 168 ~~--------------~~~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~fs~ 229 (337)
.. ...++ ..|.+.+|.-| .++-.+.. + ++- +..|+. +..+ ..+++=+.+.|
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkY--l~~Ge~~~i~~l-----d~~~yllgy~~ 242 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKY--LVNGETGIIAHL-----DKPLYLLGYLP 242 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEE--EETTEEEEEEE------SS--EEEEEET
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEE--EEcCCcceEEEc-----CCceEEEEEEc
Confidence 22 22332 67888888766 34433333 4 443 444443 2222 23466677887
Q ss_pred CCCcccEEEEEeCCCcEEEEecCC
Q 019672 230 SMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 230 dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
..+ .+.....|+.|..+.++.
T Consensus 243 ~~~---~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 243 KEN---RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTT---EEEEE-TT--EEEEE--H
T ss_pred cCC---EEEEEECCCCEEEEEECH
Confidence 665 788888888888887753
No 322
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=9.5e-05 Score=70.14 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=90.3
Q ss_pred CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------------------cccCceEEEEeCCCCCEEEEE
Q 019672 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------------------HCEAPLAAIVLSSNGMYIATA 192 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------------------~~~~~i~~~~~s~dg~~lat~ 192 (337)
++...+-+++++.+..++|++| .||.+++..+.+... .|.+.|.-+.|+.+.+.|-|.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG--~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGG--ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEecc--ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 3445677888998889999999 699999987654221 133789999999999999998
Q ss_pred eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 193 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 193 s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
..+|- |-||-+..|.-..++......+.|.+++|+.||+ .++..-.||.|-|=.++.
T Consensus 90 Dt~Gl-IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 90 DTSGL-IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred CCCce-EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeecc
Confidence 88985 5699999887655554333456799999999999 999999999987766653
No 323
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.92 E-value=0.0011 Score=57.85 Aligned_cols=226 Identities=10% Similarity=0.081 Sum_probs=120.7
Q ss_pred cCCCEEEEEeCCCCCCCCCceEEEEEC-CCCCEEEEE--EcCCceeEEEEcCC--eEEEEE-CCeEEEEECC----CCee
Q 019672 56 YSSSLLAIVGAGEQPSLSPRRLCLFNT-TTGTALREL--NFLTSILAVRLNKK--RLVIVL-REKTYIYDAN----TLAI 125 (337)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~d~~v~iwd~-~~~~~~~~~--~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~----~~~~ 125 (337)
+..+.++.++ .|+++|||-- ..++.-..+ ..++++.++.+..+ .+++.. .+++.-+.+. .+..
T Consensus 34 ~~e~gv~~~s-------~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~ 106 (404)
T KOG1409|consen 34 PKEEGVISVS-------EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF 106 (404)
T ss_pred cCCCCeEEcc-------ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch
Confidence 3345555554 4999999943 333322222 34567888887654 344444 5677776553 2222
Q ss_pred eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCc--EE
Q 019672 126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGT--II 199 (337)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~--~i 199 (337)
++....+ ...+.++-++....++++.+. |..+.---.+++..+-. .+-+++.+.-. +...|-..|. ..
T Consensus 107 ~r~~~~h--~~~v~~~if~~~~e~V~s~~~--dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 107 LKDYLAH--QARVSAIVFSLTHEWVLSTGK--DKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITML 180 (404)
T ss_pred hhhhhhh--hcceeeEEecCCceeEEEecc--ccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEE
Confidence 3333222 233445555444457777773 44443322333332211 11112222111 2223322332 23
Q ss_pred EEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeec
Q 019672 200 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL 279 (337)
Q Consensus 200 ~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w 279 (337)
|+. ...-..+.++.. +...|++++|.|..+ .|.+|+.|..|-+||+.-.+.. .+......+.+..+|
T Consensus 181 r~~-~~~~~~i~~~~~--h~~~~~~l~Wd~~~~---~LfSg~~d~~vi~wdigg~~g~-------~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 181 KLE-QNGCQLITTFNG--HTGEVTCLKWDPGQR---LLFSGASDHSVIMWDIGGRKGT-------AYELQGHNDKVQALS 247 (404)
T ss_pred EEe-ecCCceEEEEcC--cccceEEEEEcCCCc---EEEeccccCceEEEeccCCcce-------eeeeccchhhhhhhh
Confidence 333 234456666643 466799999999988 9999999999999998644321 111111112222222
Q ss_pred ccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 280 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
...- ..++++...||.+..|+++....+
T Consensus 248 ~~~~-------------t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 248 YAQH-------------TRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hhhh-------------heeeeeccCCCeEEEEeccceeec
Confidence 2211 268999999999999999766444
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.0045 Score=59.36 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=106.1
Q ss_pred EEcCCCCEEEEEcC-Cc-eEEEeCCCCcEEEEEeeCC-EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672 14 SFNQDNSGFALSTK-DG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (337)
Q Consensus 14 ~fs~dg~~la~g~~-~g-~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~ 90 (337)
-+.|||+.+..-++ .+ +.+.|.++.+...+....+ ...+.+.++...+...+.... ...++..-+......+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDWVVV 275 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCceEEE
Confidence 45678876644333 22 4677888777666544322 234455665555544431100 112333333222221111
Q ss_pred EEcCCceeEEEEcCCeEEEEECCeEEEEECCC-----CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672 91 LNFLTSILAVRLNKKRLVIVLREKTYIYDANT-----LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (337)
Q Consensus 91 ~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d 165 (337)
+.... +..+.-+++...+ .+++|.+.|.++ .+.+..+..+..|.++ ..+||+.++++++. .+.+|.|+|
T Consensus 276 fni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV---~vSPDGkylyVank-lS~tVSVID 349 (635)
T PRK02888 276 FNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV---NTSPDGKYFIANGK-LSPTVTVID 349 (635)
T ss_pred EchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccce---EECCCCCEEEEeCC-CCCcEEEEE
Confidence 11110 0011112233333 467899999988 5677778777776665 56688889888886 689999999
Q ss_pred ccCCcccc------------c----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 166 VMELHSHC------------E----APLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 166 ~~~~~~~~------------~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
+.+.+... + ..-...+|+++|+...|---|..+ -.||+.+
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv-~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI-VKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeeccee-EEEehHH
Confidence 98866411 1 233567899999988888888875 5799876
No 325
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.0022 Score=57.79 Aligned_cols=168 Identities=13% Similarity=0.157 Sum_probs=102.3
Q ss_pred ceEEEEECCCCCEEEEEEcCC--ceeEE---EEcC------CeEEEEE----------C-CeEEEEECCCC----eeeee
Q 019672 75 RRLCLFNTTTGTALRELNFLT--SILAV---RLNK------KRLVIVL----------R-EKTYIYDANTL----AILDT 128 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~~--~v~~i---~~~~------~~~~v~~----------d-~~i~i~d~~~~----~~~~~ 128 (337)
..|++.|..+.+.+.++.+.. .+.++ .+.. ..+++++ . |.|.+|++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368899998888887776544 45444 3432 3344443 1 78999999873 12222
Q ss_pred ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc-cccc------CceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCE------APLAAIVLSSNGMYIATASEQGTIIRV 201 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~v 201 (337)
+....-...+.++..-. +.+++..| +.|.+|++...+ .... ..+.++.. .+++|+.|.....+ .+
T Consensus 82 i~~~~~~g~V~ai~~~~-~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv-~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN-GRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSV-SL 153 (321)
T ss_dssp EEEEEESS-EEEEEEET-TEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSE-EE
T ss_pred EEEEeecCcceEhhhhC-CEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCE-EE
Confidence 21111233466777653 33555443 689999998776 3321 34455544 45688888876653 56
Q ss_pred EEcC-CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 202 FLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 202 wd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
+..+ .+..+..+.+...+..++++.|-+|+. .++++..+|.++++....
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEECC
Confidence 5443 244455554444455689999987777 899999999999999864
No 326
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.78 E-value=0.022 Score=49.93 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEE---------------E-eeCCEEEEE--EccCCCEEEEEeCCCC
Q 019672 8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE---------------R-AVGAFSIVE--MLYSSSLLAIVGAGEQ 69 (337)
Q Consensus 8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~---------------~-~~~~~~~~~--~~~~~~~~~~~~~g~~ 69 (337)
.+|..+..-|+-+.|++=++..+.++++........ . ...++...+ -.........+..
T Consensus 36 ~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~--- 112 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV--- 112 (275)
T ss_pred ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE---
Confidence 348999999998888877777789998766543321 1 112233222 1122233333332
Q ss_pred CCCCCceEEEEECCCC-----CEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCC----------
Q 019672 70 PSLSPRRLCLFNTTTG-----TALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN---------- 134 (337)
Q Consensus 70 ~~~~d~~v~iwd~~~~-----~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~---------- 134 (337)
.++|.+|.+..+ +...++..+..+..+.|.++.++++..+...+.|+.++.....+.....
T Consensus 113 ----kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~ 188 (275)
T PF00780_consen 113 ----KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS 188 (275)
T ss_pred ----CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence 569999887543 5678888999999999999999999988999999987654333221111
Q ss_pred CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672 135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~ 208 (337)
...+..+..+. +.+|.+- +..-...|.. ++... .....++++.. .+|+.-+.++ |.||++.+++
T Consensus 189 ~~~~~~~~~~~-~e~Ll~~----~~~g~fv~~~-G~~~r~~~i~W~~~p~~~~~~~--pyli~~~~~~--iEV~~~~~~~ 258 (275)
T PF00780_consen 189 SKPLGIFQLSD-NEFLLCY----DNIGVFVNKN-GEPSRKSTIQWSSAPQSVAYSS--PYLIAFSSNS--IEVRSLETGE 258 (275)
T ss_pred CCceEEEEeCC-ceEEEEe----cceEEEEcCC-CCcCcccEEEcCCchhEEEEEC--CEEEEECCCE--EEEEECcCCc
Confidence 11222333322 3344432 2222233332 22221 25566777743 4777777654 6999999999
Q ss_pred eeEeec
Q 019672 209 KSYSFR 214 (337)
Q Consensus 209 ~~~~~~ 214 (337)
+++.+.
T Consensus 259 lvQ~i~ 264 (275)
T PF00780_consen 259 LVQTIP 264 (275)
T ss_pred EEEEEE
Confidence 988875
No 327
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.026 Score=52.69 Aligned_cols=201 Identities=15% Similarity=0.236 Sum_probs=103.2
Q ss_pred EEEcCCCCEEEEEcCC------------ceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 13 VSFNQDNSGFALSTKD------------GFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 13 ~~fs~dg~~la~g~~~------------g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
++..|.|..+|.-.+. .+.||+.. |+++... +.+.+....+.. ...++++. .||.++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~LvvV~-------~dG~v~ 104 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEELVVVQ-------SDGTVR 104 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCeEEEEE-------cCCEEE
Confidence 4556777777766555 46788865 4444433 223333344433 33445554 389999
Q ss_pred EEECCCCCEEEEEEcCC-----ce-----eEEEEcCCeEEEEE-CCeEEEEEC-CCCeeeeeecC-CC---------CCc
Q 019672 79 LFNTTTGTALRELNFLT-----SI-----LAVRLNKKRLVIVL-REKTYIYDA-NTLAILDTIDT-VP---------NLK 136 (337)
Q Consensus 79 iwd~~~~~~~~~~~~~~-----~v-----~~i~~~~~~~~v~~-d~~i~i~d~-~~~~~~~~~~~-~~---------~~~ 136 (337)
++|+. |+. ++.... .| ..+.+.++++++.+ ++.+.+.+- ......+.+.. +. ...
T Consensus 105 vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~ 181 (410)
T PF04841_consen 105 VYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT 181 (410)
T ss_pred EEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence 99986 333 222211 22 22344456776665 555544422 21111111110 00 000
Q ss_pred eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 215 (337)
Q Consensus 137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~ 215 (337)
.+..+ +.+....+... .++.+.+.+-...+.+ ..+++..+++||+|++||.-..+|. +.|.+..-.+.+.++..
T Consensus 182 ~i~~l--~~~~~~~i~~~--~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 182 VIPLL--SSDRVVEILLA--NGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDT 256 (410)
T ss_pred cceEe--ecCcceEEEEe--cCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeec
Confidence 01111 12222222222 2455665554332222 2378999999999999999999998 46877665566666644
Q ss_pred CCcceeEEEEEeecCC
Q 019672 216 GTYPSTIFSLSFGQSM 231 (337)
Q Consensus 216 ~~~~~~i~~l~fs~dg 231 (337)
+. ......|.|.-++
T Consensus 257 ~~-~~~p~~~~WCG~d 271 (410)
T PF04841_consen 257 DS-KSPPKQMAWCGND 271 (410)
T ss_pred Cc-CCCCcEEEEECCC
Confidence 31 2234566666544
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0064 Score=59.31 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=105.8
Q ss_pred EEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEcc---CCCEEEEEeCCCCCCCCCceEEEEECCCC---C
Q 019672 14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLY---SSSLLAIVGAGEQPSLSPRRLCLFNTTTG---T 86 (337)
Q Consensus 14 ~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~d~~v~iwd~~~~---~ 86 (337)
.|++.+..++.|+.+| +.++| ...+.++..+.....++...+ ..+.++.++-+..+ ..-.|+|||++.- .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCC--CceEEEEecccccCCCC
Confidence 3568888899999887 44444 233444554443333444433 33455555533211 1237999998632 2
Q ss_pred -EEEE-----EE--c---CCceeEEEEcCCeE-EEEE--CCeEEEEE--CCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672 87 -ALRE-----LN--F---LTSILAVRLNKKRL-VIVL--REKTYIYD--ANTLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (337)
Q Consensus 87 -~~~~-----~~--~---~~~v~~i~~~~~~~-~v~~--d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (337)
+.+. ++ . +.++..++++.+-. ++++ +|.|..+. +-..+-.+....+.....++++....++..+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 2221 11 2 23667777766533 3333 78888873 2111111222222233344544443333331
Q ss_pred EEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672 151 AVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT 217 (337)
Q Consensus 151 a~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~ 217 (337)
.+.. +...|.+|.+......+ ..+++|.+|++.-..+++++..+ +.+||....+.-..|..|+
T Consensus 187 lFv~--Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 187 LFVA--TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred EEEE--ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeecCCC
Confidence 1111 24569999988444111 17789999998666566666554 6899998766666676443
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0021 Score=63.59 Aligned_cols=128 Identities=16% Similarity=0.237 Sum_probs=88.5
Q ss_pred CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-------CCccEEEEcCCCCccEEEEEEccCCc--ccc--------c
Q 019672 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-------LNACFLAVPASTTKGSVLVYNVMELH--SHC--------E 174 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~dg~v~i~d~~~~~--~~~--------~ 174 (337)
.+.++-.||..|+.+..+..+.+.. +..+.++ +...++.. .+..+..||.+-.. .+. .
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEE----CCCceEEeccCCCCCceeeccccccccC
Confidence 3578899999999999988765432 5566653 22233333 26779999987532 221 1
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
...+|++-+.+| +||.||.+|. ||+||- .|+.-++.-.+ -..+|..|..+.||+ |+++++. ..+-|++..
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGk---wilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGK---WILATCK-TYLLLIDTL 647 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCc---EEEEeec-ceEEEEEEe
Confidence 668899988887 6899999998 799994 45443433223 246799999999999 7776654 467787753
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0093 Score=59.22 Aligned_cols=126 Identities=13% Similarity=0.322 Sum_probs=84.3
Q ss_pred CCceEEEEECCCCCEEEEEEcCC--ceeEEEEc-------CCeEEEEE-CCeEEEEECCCCe--eeee-ecCCCCCceEE
Q 019672 73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLN-------KKRLVIVL-REKTYIYDANTLA--ILDT-IDTVPNLKGLC 139 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~-------~~~~~v~~-d~~i~i~d~~~~~--~~~~-~~~~~~~~~~~ 139 (337)
.++.|.-.|+++|+.+.++.++. +|..+.-+ +...+++. ++.++.||.+-.. ++.. ...........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 46889999999999999998876 35666442 33344444 7899999997532 2211 11111112345
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~ 204 (337)
|++...+| ++|+++ .+|.|++||-. ++...+ .||..|..+.||++|++.+..- +-|+++
T Consensus 582 ~~aTt~~G-~iavgs--~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty--LlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGS--NKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTY--LLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEe--CCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecce--EEEEEE
Confidence 66666665 667776 58999999943 332222 8999999999999998877653 347775
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.63 E-value=0.0028 Score=59.38 Aligned_cols=208 Identities=12% Similarity=0.115 Sum_probs=96.9
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEc-CCeEEEEE-CCeEEEE-ECCCCeeeee
Q 019672 52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN-KKRLVIVL-REKTYIY-DANTLAILDT 128 (337)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~-d~~i~i~-d~~~~~~~~~ 128 (337)
+...++...+++++ |+.-.|+.....+.... ++-..+.|. ++.+++.. .++|.|+ ++ +.+....
T Consensus 38 ls~npngr~v~V~g--------~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~-~~~~~k~ 104 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG--------DGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNF-KNEVVKS 104 (443)
T ss_dssp EEE-TTSSEEEEEE--------TTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETT-EE-TT--
T ss_pred EEECCCCCEEEEEc--------CCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcC-ccccceE
Confidence 34445556665543 56778877443332221 222334454 45555555 5789996 33 2222234
Q ss_pred ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~ 205 (337)
+..+.....+.. |.+|+..+ ++.|.+||+.+++.+.+ .+|..+.||++|+++|-.+.+.. .|++..
T Consensus 105 i~~~~~~~~If~------G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i--~il~~~ 173 (443)
T PF04053_consen 105 IKLPFSVEKIFG------GNLLGVKS---SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSI--YILKYN 173 (443)
T ss_dssp ---SS-EEEEE-------SSSEEEEE---TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SE--EEEEE-
T ss_pred EcCCcccceEEc------CcEEEEEC---CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeE--EEEEec
Confidence 544333334433 55676665 45899999999987765 55899999999999999998863 465543
Q ss_pred CC--------------ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc-CCCCccccccccc
Q 019672 206 EA--------------TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ-RRGGRTSSILGSI 270 (337)
Q Consensus 206 ~~--------------~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~-~~~~~~~~~~~~~ 270 (337)
.. +.+.++ ...|.+.+|..| - ++.+... .++-+ -.+... .......-|+.++
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~---fiYtT~~--~lkYl--~~Ge~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-C---FIYTTSN--HLKYL--VNGETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-E---EEEE-TT--EEEEE--ETTEEEEEEE-SS--EEEEE
T ss_pred chhcccccccCchhceEEEEEe-----cceeEEEEEEcC-E---EEEEcCC--eEEEE--EcCCcceEEEcCCceEEEEE
Confidence 22 222221 234777778765 3 5555544 45442 111100 0000000111111
Q ss_pred ccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672 271 LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 319 (337)
Q Consensus 271 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~ 319 (337)
+ ++.++++....|+.+..+.++...-
T Consensus 241 ~-----------------------~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 241 L-----------------------PKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp E-----------------------TTTTEEEEE-TT--EEEEE--HHHH
T ss_pred E-----------------------ccCCEEEEEECCCCEEEEEECHHHH
Confidence 1 1237899999999999999887643
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.01 Score=53.13 Aligned_cols=234 Identities=9% Similarity=0.058 Sum_probs=122.1
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEc-CCceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672 5 SSSYPVFFVSFNQDNS-GFALST-KDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~-~la~g~-~~g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
.+..-|..++|+|..+ ++..++ ++.++|.|+++......... ..+..+++.-+....+++|. ..|.|.++|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl------~nG~VlvyD 264 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL------QNGMVLVYD 264 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec------cCceEEEEE
Confidence 3455689999999888 444444 45679999998876654433 33444555555556667765 588999999
Q ss_pred CCCCCEE-EEEEc---CCceeEEE-------EcCCeEEEEECCeEEEEECCCC--eeeeeecCCCCCceEEEEeeCCCc-
Q 019672 82 TTTGTAL-RELNF---LTSILAVR-------LNKKRLVIVLREKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSLNA- 147 (337)
Q Consensus 82 ~~~~~~~-~~~~~---~~~v~~i~-------~~~~~~~v~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~- 147 (337)
++..+-. .++.. ..+|..|+ |...+++++.--....|++.-. -.....+. .++.....+..++-.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSN 343 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeeecCccc
Confidence 9865422 22211 12344333 2334555555555566665321 11111111 111122233332211
Q ss_pred cEEEEcCCC---------------CccEEEEEEccCCc---cccc-CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672 148 CFLAVPAST---------------TKGSVLVYNVMELH---SHCE-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 148 ~~la~~~~~---------------~dg~v~i~d~~~~~---~~~~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~ 208 (337)
..|++.-++ .|| -.||--+... ...+ ..-..+.-.++.++|+.-+.+.+-+.+||..+++
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE 422 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence 122221110 011 1222221111 0000 1112222345667777666555557899999999
Q ss_pred eeEeeccCCcceeEEEEEeec-CCCcccEEEEEeCCCcEEEEecC
Q 019672 209 KSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 209 ~~~~~~~~~~~~~i~~l~fs~-dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.++++.. ..+|..++... +|. .+|++-. |..+|||..+
T Consensus 423 vvQ~l~~---~epv~Dicp~~~n~~--syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 423 VVQTLAL---SEPVLDICPNDTNGS--SYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeeccc---CcceeecceeecCCc--chhhhee-cceEEEEecC
Confidence 9998853 35677776553 333 2666655 5589998754
No 333
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.59 E-value=0.00036 Score=66.61 Aligned_cols=292 Identities=10% Similarity=0.042 Sum_probs=157.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCceEEEeCCC-Cc---EEEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEEEEE
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GR---LCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLFN 81 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~iwd 81 (337)
..++..++.+|-|+-+|.++..|+.+-|++. +. -++....-.++.+.+..++ .-..+|+. +..+-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec------Ccchhhhhh
Confidence 3567788999999999999999988888754 32 2333322334555555444 23444554 356778899
Q ss_pred CCCC--CEEEEE--EcCCceeEEEEcCCe---EEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 82 TTTG--TALREL--NFLTSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 82 ~~~~--~~~~~~--~~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
+... +.+.-+ .+...|+++-|+++. +..+. |..+..||++... .+.......+...-+.+..- +...+|.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-DPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-Ccchhhh
Confidence 7532 333322 334478999997654 33333 8899999998763 34443333232223333331 2234444
Q ss_pred cCCCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672 153 PASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 225 (337)
Q Consensus 153 ~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l 225 (337)
. ....|++||++.+... +...|+.++|+.- -..+.+.+.||+ ++.||........+... ....+|.--
T Consensus 177 s---hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~v-tt~~piw~~ 251 (1081)
T KOG0309|consen 177 S---HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTV-TTNFPIWRG 251 (1081)
T ss_pred c---cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceec-cccCcceec
Confidence 3 2567999999876532 2377888888763 346788999998 59999865443222111 112345555
Q ss_pred EeecCCCcccEEEEE-eCCCcEEEEecCCCccc---CCCCcc-cccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672 226 SFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQ---RRGGRT-SSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 300 (337)
Q Consensus 226 ~fs~dg~~~~~las~-s~dg~v~iw~l~~~~~~---~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l 300 (337)
.|-|=|. .+..-- -.++.|++++-+..-.. ....++ ..|.| .-.....-.|....-. -..-+.++-+|
T Consensus 252 r~~Pfg~--g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~D~V~eFlWR~r~e~----~~d~d~rdfQL 324 (1081)
T KOG0309|consen 252 RYLPFGE--GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HDDVVLEFLWRKRKEC----DGDYDSRDFQL 324 (1081)
T ss_pred cccccCc--eeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cchHHHHHhhhhcccc----cCCCCccceeE
Confidence 5555443 122211 11224555543321110 000001 01111 1111111133321100 00112345689
Q ss_pred EEEEeCCcEEEEEEecC
Q 019672 301 SVITYNGYFVEYIFSIN 317 (337)
Q Consensus 301 ~~~~~dg~~~~~~~~~~ 317 (337)
++=+.|-.++.|.++.+
T Consensus 325 VTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred EEeecCCceEeeeccHH
Confidence 99999999999999765
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.56 E-value=0.0024 Score=59.81 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=61.4
Q ss_pred EEEEECCCCeeeee-ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEE
Q 019672 115 TYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIA 190 (337)
Q Consensus 115 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~la 190 (337)
-.+|++...++... +..-+-+..+++.+.+|+...++.+- .||+|.+||...+..... -..+.++|+|+|..++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC--~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC--EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe--cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEE
Confidence 45677754432211 11112233456666777777777665 699999999876543222 5578999999999999
Q ss_pred EEeCCCcEEEEEEcCCC
Q 019672 191 TASEQGTIIRVFLVSEA 207 (337)
Q Consensus 191 t~s~dg~~i~vwd~~~~ 207 (337)
+|++.|. +.+||+.-.
T Consensus 316 V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 316 VGSEQGE-LQCFDMALS 331 (545)
T ss_pred EEcCCce-EEEEEeecC
Confidence 9999997 699998643
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00013 Score=70.80 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=113.7
Q ss_pred CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE----CC-eEEEEECC
Q 019672 48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL----RE-KTYIYDAN 121 (337)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~----d~-~i~i~d~~ 121 (337)
...++++.-..+.+++.+ ..|.|+++++.+|.....+..++ +|+-+..+.++-...+ .. -..+|++.
T Consensus 1103 ~fTc~afs~~~~hL~vG~-------~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGS-------HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ceeeEEeecCCceEEeee-------ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 344555555556776654 37899999999999888777654 7887877665533322 22 46689985
Q ss_pred C-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCCCCEEEE
Q 019672 122 T-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSNGMYIAT 191 (337)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat 191 (337)
. +...+++... ..+-|+-+.....+-+. ...+.+||+++.....+ ..=++..|||+.+++.
T Consensus 1176 s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~----~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1176 STGGPRHSFDED----KAVKFSNSLQFRALGTE----ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred cccCcccccccc----ceeehhhhHHHHHhccc----ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 3 4555666432 11223322222222222 24589999999876543 2348899999998876
Q ss_pred EeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 192 ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 192 ~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.|| + +||++..+.++.|.+-. ..+. =.|+|.|. -++..+ .|||+++.+-
T Consensus 1247 --ndG--v-LWDvR~~~aIh~FD~ft--~~~~-G~FHP~g~---eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1247 --NDG--V-LWDVRIPEAIHRFDQFT--DYGG-GGFHPSGN---EVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred --eCc--e-eeeeccHHHHhhhhhhe--eccc-ccccCCCc---eEEeec-----hhhhhHHHHH
Confidence 577 4 89999998888875421 1122 26999998 777665 4899887653
No 336
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.53 E-value=0.0013 Score=56.76 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce---eEeeccCCc---ceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672 172 HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTY---PSTIFSLSFGQSMQFQDILVATSSSGS 245 (337)
Q Consensus 172 ~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~---~~~~~~~~~---~~~i~~l~fs~dg~~~~~las~s~dg~ 245 (337)
.|.-.|+++.|+.|...+.++. |=+ |.+|++.-... +..++.... ...|++..|+|... +.+--.+..|+
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLr-INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--n~fmYSsSkG~ 245 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLR-INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--NVFMYSSSKGE 245 (460)
T ss_pred cceeEeeeeeecCchheeeecc-cee-eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--ceEEEecCCCc
Confidence 4557799999999998888764 334 68999864322 222221110 12389999999876 47778888999
Q ss_pred EEEEecCCC
Q 019672 246 LHVFSPGFA 254 (337)
Q Consensus 246 v~iw~l~~~ 254 (337)
|++-|+++.
T Consensus 246 Ikl~DlRq~ 254 (460)
T COG5170 246 IKLNDLRQS 254 (460)
T ss_pred EEehhhhhh
Confidence 999999753
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.015 Score=56.42 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=106.9
Q ss_pred CCEEEEEcCCc-eEEEeCCCCc-EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCc
Q 019672 19 NSGFALSTKDG-FKIFDSSTGR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS 96 (337)
Q Consensus 19 g~~la~g~~~g-~~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 96 (337)
++.|+-|+-+| +.+++.+..- ..+.. .. ....+.+++.++. ||+|.|-.+-+.+..+++.+..+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~--s~-----~~~~Gey~asCS~-------DGkv~I~sl~~~~~~~~~df~rp 114 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPKTNFDH--SS-----SILEGEYVASCSD-------DGKVVIGSLFTDDEITQYDFKRP 114 (846)
T ss_pred cceeeeccccceEEEEecCCcccccccc--cc-----cccCCceEEEecC-------CCcEEEeeccCCccceeEecCCc
Confidence 35678888776 5777755331 11111 11 1345667776654 99999999999999999999999
Q ss_pred eeEEEEcCC------eEEEEECC-eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC
Q 019672 97 ILAVRLNKK------RLVIVLRE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL 169 (337)
Q Consensus 97 v~~i~~~~~------~~~v~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~ 169 (337)
+.+|+++|+ +.+++++. .+.++.-+=.+....+..+.....+.++++.+ .++|.++ .+| |+|||+.+.
T Consensus 115 iksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~lIAWan--d~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--NLIAWAN--DDG-VKVYDTPTR 189 (846)
T ss_pred ceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecC--cEEEEec--CCC-cEEEecccc
Confidence 999999988 23444422 27776543222222222333445577788764 4999887 355 999999876
Q ss_pred ccccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 170 HSHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 170 ~~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
+.+.. .--..+.|.++. .|+-|=.| + |+|..++.
T Consensus 190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~-v~i~~I~~ 234 (846)
T KOG2066|consen 190 QRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-S-VKICSIKK 234 (846)
T ss_pred ceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-e-EEEEEEec
Confidence 65321 224567888774 56677666 3 68888873
No 338
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0027 Score=58.76 Aligned_cols=136 Identities=14% Similarity=0.282 Sum_probs=86.3
Q ss_pred CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC---------eEEEEE-CCeEEEEECCCC-e-
Q 019672 57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVIVL-REKTYIYDANTL-A- 124 (337)
Q Consensus 57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~v~~-d~~i~i~d~~~~-~- 124 (337)
+++++.+.++ ..+.|.-.|+++|+.+.+..++..|.-+.+.++ .-+++. ++.|.-||.+-. +
T Consensus 344 dsnlil~~~~------~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 344 DSNLILMDGG------EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred ccceEeeCCC------CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 4455554444 457888899999999999999887666666543 223333 789999998632 1
Q ss_pred eeeeecCCC--CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCC
Q 019672 125 ILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQG 196 (337)
Q Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg 196 (337)
.+...+.+. ....-.|++.-.++ ++++++ .+|.|++||- .+....+ .+|..|..+.||++|+..+..
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS--~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t- 492 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGS--LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT- 492 (644)
T ss_pred eeeeeeccccccccccceeeecCCc-eEEEee--cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-
Confidence 111111111 01122344444444 667776 5899999997 3433322 889999999999998877654
Q ss_pred cEEEEEEc
Q 019672 197 TIIRVFLV 204 (337)
Q Consensus 197 ~~i~vwd~ 204 (337)
.+ -+-++
T Consensus 493 yL-lLi~t 499 (644)
T KOG2395|consen 493 YL-LLIDT 499 (644)
T ss_pred EE-EEEEE
Confidence 33 35554
No 339
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.46 E-value=0.12 Score=49.93 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=104.2
Q ss_pred EEEEEc-CCceEEEeCCCCcEEEEEeeCC---EE---EEE-----EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672 21 GFALST-KDGFKIFDSSTGRLCYERAVGA---FS---IVE-----MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL 88 (337)
Q Consensus 21 ~la~g~-~~g~~vw~~~~~~~~~~~~~~~---~~---~~~-----~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~ 88 (337)
.+.+++ ...+.-+|..+|+++...+... .. ... .....+.+ +++. .|+.|.-.|.++|+.+
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v-~v~t------~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKV-FFGT------LDARLVALDAKTGKVV 143 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEE-EEEc------CCCEEEEEECCCCCEE
Confidence 444444 4446778999999887654311 10 000 11112233 3433 4889999999999988
Q ss_pred EEEEcCC-----ceeE-EEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCc-------------------
Q 019672 89 RELNFLT-----SILA-VRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK------------------- 136 (337)
Q Consensus 89 ~~~~~~~-----~v~~-i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~------------------- 136 (337)
-+..... .+.+ -.+..+.+++.. ++.|.-+|..+++.+..+.+.+...
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 7654321 1111 112345555543 4789999999999887765432210
Q ss_pred --------e--E-EEEeeCCCccEEEEcCCC----------C----ccEEEEEEccCCccc-------cc-------Cce
Q 019672 137 --------G--L-CAFSPSLNACFLAVPAST----------T----KGSVLVYNVMELHSH-------CE-------APL 177 (337)
Q Consensus 137 --------~--~-~~~~~~~~~~~la~~~~~----------~----dg~v~i~d~~~~~~~-------~~-------~~i 177 (337)
+ + ...+.+++..++..+... . ...|.-.|+++++.. |. .+.
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 0 0 122444444444433210 0 125677788888764 11 223
Q ss_pred EEEEeCCCCC---EEEEEeCCCcEEEEEEcCCCcee
Q 019672 178 AAIVLSSNGM---YIATASEQGTIIRVFLVSEATKS 210 (337)
Q Consensus 178 ~~~~~s~dg~---~lat~s~dg~~i~vwd~~~~~~~ 210 (337)
.-+.+..+|+ .++.+..+|. +.+.|-.+|+.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 3344446777 7888999996 589999999986
No 340
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.42 E-value=0.068 Score=46.06 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=73.1
Q ss_pred EEEEcCCCCEEEEEcCCc---eEEEeCCCCcEEEEEeeCCEEEE-EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672 12 FVSFNQDNSGFALSTKDG---FKIFDSSTGRLCYERAVGAFSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (337)
Q Consensus 12 ~~~fs~dg~~la~g~~~g---~~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~ 87 (337)
.+.|..+|.++-+.+..| ++.+|+++++.+.......-..- .+..-.+.+...+- ..+...+||..+-+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTTTEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEccccceE
Confidence 455666777655444443 68999999988766544321111 11122455555554 589999999999999
Q ss_pred EEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCC
Q 019672 88 LRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTV 132 (337)
Q Consensus 88 ~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~ 132 (337)
+.++.++..=..+..+.+.+++.. ..+++++|..+.+..+.+...
T Consensus 123 ~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 999999888888887777766654 568999999888777776443
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0012 Score=65.64 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=69.1
Q ss_pred cEEEEcCCCCccEEEEEEccC-Ccccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce-
Q 019672 148 CFLAVPASTTKGSVLVYNVME-LHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS- 220 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d~~~-~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~- 220 (337)
..++.+.+ .|.|...|+.. ....+ +++|++++|+.||++++.|-.+|. |.+||+.+++.++.+..+.++.
T Consensus 100 ~~ivi~Ts--~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 100 VPIVIGTS--HGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeEEEEcC--chhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccc
Confidence 35666553 67788888765 23222 299999999999999999999997 6899999998888776543332
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.|..+.+..++. .+.++...|. +|++.
T Consensus 177 ~vi~v~~t~~nS---~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS---KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence 233344445555 7888888886 67653
No 342
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.15 Score=50.25 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=92.4
Q ss_pred CCceEEEEECCCCCEEEEE-EcCCc-eeEEEEcCC--eEEEEE-C-C----eEEEEECCCC------eee--eeecC---
Q 019672 73 SPRRLCLFNTTTGTALREL-NFLTS-ILAVRLNKK--RLVIVL-R-E----KTYIYDANTL------AIL--DTIDT--- 131 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~-~~~~~-v~~i~~~~~--~~~v~~-d-~----~i~i~d~~~~------~~~--~~~~~--- 131 (337)
.+|.|.+.+-.- +.+..+ .++.. |.-+....+ .++... | + .++|||+... +.+ +.+.+
T Consensus 43 ~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~n 121 (933)
T KOG2114|consen 43 ADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKN 121 (933)
T ss_pred ccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCC
Confidence 478887776432 222333 23334 444444343 233333 3 2 5899999532 223 12222
Q ss_pred CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE--ccCCc-----ccc--cCceEEEEeCCCCCE-EEEEeCCCcEEEE
Q 019672 132 VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN--VMELH-----SHC--EAPLAAIVLSSNGMY-IATASEQGTIIRV 201 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d--~~~~~-----~~~--~~~i~~~~~s~dg~~-lat~s~dg~~i~v 201 (337)
+.++...+.++.+.+-..+|++- .+|.|..+. +..-+ ..+ ..||+.+++..+++. +..+... . |.+
T Consensus 122 p~~~~p~s~l~Vs~~l~~Iv~Gf--~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~-V~~ 197 (933)
T KOG2114|consen 122 PTNPSPASSLAVSEDLKTIVCGF--TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-Q-VML 197 (933)
T ss_pred CCCCCcceEEEEEccccEEEEEe--cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-e-eEE
Confidence 22233344455444455566544 589999884 22111 112 289999999999887 3333333 3 579
Q ss_pred EEcCCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 202 FLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 202 wd~~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
|.+..... ...+ ..+...+.|.+|++... .+++++.. -+.+|+.+
T Consensus 198 y~l~gr~p~~~~l--d~~G~~lnCss~~~~t~---qfIca~~e-~l~fY~sd 243 (933)
T KOG2114|consen 198 YSLSGRTPSLKVL--DNNGISLNCSSFSDGTY---QFICAGSE-FLYFYDSD 243 (933)
T ss_pred EEecCCCcceeee--ccCCccceeeecCCCCc---cEEEecCc-eEEEEcCC
Confidence 99873331 2223 23456789999986554 35555443 69999876
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.24 Score=46.31 Aligned_cols=162 Identities=16% Similarity=0.182 Sum_probs=83.0
Q ss_pred eEEEEECCCCCEEEEEEcC-CceeEEEEcCC-eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE-----EEEeeCCCc
Q 019672 76 RLCLFNTTTGTALRELNFL-TSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL-----CAFSPSLNA 147 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~-~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 147 (337)
.|.||+.. |+++.++... +++.++.|+.+ .+++.. +|.+++||+.... ...+........+ .+......|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 69999874 6677777665 58999999655 455444 8999999986433 1111110000111 111221233
Q ss_pred cEEEEcCCCCccEEEEEE-ccCCcc---ccc-----------CceEE-EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672 148 CFLAVPASTTKGSVLVYN-VMELHS---HCE-----------APLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSY 211 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d-~~~~~~---~~~-----------~~i~~-~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~ 211 (337)
.++..+ ++.+.+.. ...... ... ..... ..++.+....+....++. +.+-+-...+.
T Consensus 140 -ivvLt~---~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~-- 212 (410)
T PF04841_consen 140 -IVVLTG---NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ-- 212 (410)
T ss_pred -EEEECC---CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc--
Confidence 222222 33443332 111100 000 00000 234444444444444433 33223222111
Q ss_pred eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
+. ...++..|+.||+|+ ++|.-..+|.+.|...+-
T Consensus 213 -i~---~~~~i~~iavSpng~---~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 -ID---SDGPIIKIAVSPNGK---FIALFTDSGNLWVVSSDF 247 (410)
T ss_pred -cc---CCCCeEEEEECCCCC---EEEEEECCCCEEEEECcc
Confidence 11 124689999999999 999999999998887543
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0022 Score=57.23 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=70.2
Q ss_pred EEEEEccCCccc---c--cCceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672 161 VLVYNVMELHSH---C--EAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 234 (337)
Q Consensus 161 v~i~d~~~~~~~---~--~~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~ 234 (337)
|++.+..+.+.. + ...|..++|||..+ +|..++.+.. |+|.|+++......+.. ...+++++|.-|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a---~~~~wSC~wDlde~-- 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA---YNQIWSCCWDLDER-- 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec---cCCceeeeeccCCc--
Confidence 666655444432 2 26799999999877 6777777765 89999999887776643 25699999998877
Q ss_pred cEEEEEeCCCcEEEEecCCCccc
Q 019672 235 DILVATSSSGSLHVFSPGFAINQ 257 (337)
Q Consensus 235 ~~las~s~dg~v~iw~l~~~~~~ 257 (337)
+++-+|-..|.|.|||++....+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred ceeEEeccCceEEEEEccCCCch
Confidence 59999999999999999876543
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.0017 Score=36.96 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=26.3
Q ss_pred ceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
...|.++.|++++. ++++++.|+.+++|+
T Consensus 12 ~~~i~~~~~~~~~~---~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGK---YLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCC---EEEEecCCCeEEEcC
Confidence 45699999999998 999999999999996
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.23 Score=45.89 Aligned_cols=216 Identities=13% Similarity=0.123 Sum_probs=135.2
Q ss_pred EEEEEcCCCCEEEEEc--CCceEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672 11 FFVSFNQDNSGFALST--KDGFKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (337)
Q Consensus 11 ~~~~fs~dg~~la~g~--~~g~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~ 87 (337)
..+++++++..+.+.. .+.+.+.|..+.+.+.....+ .-..+.+.++.+.+.....+ ..++++.+.|..+++.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~----~~~~~vsvid~~t~~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAG----NGNNTVSVIDAATNKV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecc----cCCceEEEEeCCCCeE
Confidence 4678899998655444 466899998777776655433 22334555666555444432 1268999999999998
Q ss_pred EEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeee-e----ecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672 88 LRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILD-T----IDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (337)
Q Consensus 88 ~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~la~~~~~~d 158 (337)
+.+......-..+++++++ ++++. ++.+.+.|.......+ . +.....+ ....+.++....+++-... .+
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~-~~ 230 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGS-GS 230 (381)
T ss_pred EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceEEECCCCCEEEEEeccC-CC
Confidence 8886554322778887654 45554 7799999987665542 1 2222222 2344555444444444332 24
Q ss_pred cEEEEEEccCCccccc-Cc-----eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-eeEEEEEeecCC
Q 019672 159 GSVLVYNVMELHSHCE-AP-----LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSLSFGQSM 231 (337)
Q Consensus 159 g~v~i~d~~~~~~~~~-~~-----i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~l~fs~dg 231 (337)
+.+...|..++..... .+ ...+.++|+|+.+......+..+.+-|..+.+....+..+... ..+..+++.+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 7899999888765433 22 3458999999998888655434688999888877765443321 235666776654
Q ss_pred C
Q 019672 232 Q 232 (337)
Q Consensus 232 ~ 232 (337)
.
T Consensus 311 ~ 311 (381)
T COG3391 311 D 311 (381)
T ss_pred c
Confidence 3
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.10 E-value=0.25 Score=46.16 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCEEEEEcC-Cc-----eEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCC----CCCCceEE
Q 019672 10 VFFVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQP----SLSPRRLC 78 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~-~g-----~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~d~~v~ 78 (337)
+...+++|||+++|.+.+ +| ++++|+++++.+... .......+.+..++..+.+..-.... ......|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 346789999999887643 22 589999999876543 21111226777787788777654221 11266799
Q ss_pred EEECCCCCEE--EEEEcC--Cc-eeEEEEcCC--eEEEEE----C-CeEEEEECCCC----eeeeeecCCCCCceEEEEe
Q 019672 79 LFNTTTGTAL--RELNFL--TS-ILAVRLNKK--RLVIVL----R-EKTYIYDANTL----AILDTIDTVPNLKGLCAFS 142 (337)
Q Consensus 79 iwd~~~~~~~--~~~~~~--~~-v~~i~~~~~--~~~v~~----d-~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~ 142 (337)
.|.+.++... .-+... .- ...+..+++ .+++.. + ..+++.|+..+ .....+...... ....+.
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~ 284 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVD 284 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEE
Confidence 9998876432 222222 22 456666654 344433 3 46888898764 223333222111 112222
Q ss_pred eCCCccEEEEcCCCCccEEEEEEccCCcccc--------cC--ceEEEEeCCCCCEEEEEeCCCc-EEEEEEcCCCceeE
Q 019672 143 PSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EA--PLAAIVLSSNGMYIATASEQGT-IIRVFLVSEATKSY 211 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~--------~~--~i~~~~~s~dg~~lat~s~dg~-~i~vwd~~~~~~~~ 211 (337)
...+..++.+......+.|...++......+ .. .+..+....+ .+++.--.++. .|+++++..+....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCCcEEe
Confidence 2333334444332245777778877665311 12 3455544322 34444444442 35789988444444
Q ss_pred eeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCCCc
Q 019672 212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI 255 (337)
Q Consensus 212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~~~ 255 (337)
.+... ..+.|..+...+++. .+.++-+.- +++.-||+.+++
T Consensus 364 ~~~~p-~~g~v~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 364 EIPLP-EAGSVSGVSGDFDSD--ELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEESS-SSSEEEEEES-TT-S--EEEEEEEETTEEEEEEEEETTTTC
T ss_pred eecCC-cceEEeccCCCCCCC--EEEEEEeCCCCCCEEEEEECCCCC
Confidence 44322 233466666666665 244433333 456667776554
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0048 Score=58.90 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=80.0
Q ss_pred EEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee-
Q 019672 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS- 210 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~- 210 (337)
..++.. ...+++.+.+ .|.+.+|.-..+.... .+.+..+.+|++..++|.|+..|. |.++-++.+..-
T Consensus 38 lTc~ds--t~~~l~~GsS--~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 38 LTCVDA--TEEYLAMGSS--AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD 112 (726)
T ss_pred EEEeec--CCceEEEecc--cceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc
Confidence 344443 4558888874 7999999877665432 256778889999999999998886 578887764321
Q ss_pred -EeeccCC--cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 211 -YSFRRGT--YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 211 -~~~~~~~--~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.-+.... |+..|++++||+|+. .+.+|...|+|+.-.|+.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 1122222 356799999999999 999999999999988876
No 349
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.06 E-value=0.11 Score=53.11 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee-----CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw 80 (337)
-+..|-+++||||++.++..+....-++...+...+.+... ..-..+.+-|...--.+-|. -++...-
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-------~gr~~~~ 180 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGS-------EGRQAAR 180 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecc-------hhhhccc
Confidence 35689999999999998888776655554444444433321 11111122121111111111 1111111
Q ss_pred ECCCC-CEEEEEEcCCceeEEEEcCCe--EEEEE-----C-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 81 NTTTG-TALRELNFLTSILAVRLNKKR--LVIVL-----R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 81 d~~~~-~~~~~~~~~~~v~~i~~~~~~--~~v~~-----d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
+.... +.+........=..|.|-.++ +++.. + .+|+|||-. +. +.....+ ....--++++-|.|..+|
T Consensus 181 ~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~-~~~l~~~LsWkPsgs~iA 257 (1265)
T KOG1920|consen 181 QKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEP-VEGLQHSLSWKPSGSLIA 257 (1265)
T ss_pred ccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCc-ccccccceeecCCCCeEe
Confidence 11100 000111112222346775554 44422 4 689999976 43 3333221 111223556666777888
Q ss_pred EcCCC-CccEEEEEEccCCcc--------cccCceEEEEeCCCCCEEEEE--eCCCcEEEEEEcCCC
Q 019672 152 VPAST-TKGSVLVYNVMELHS--------HCEAPLAAIVLSSNGMYIATA--SEQGTIIRVFLVSEA 207 (337)
Q Consensus 152 ~~~~~-~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~--s~dg~~i~vwd~~~~ 207 (337)
+.... .++.|.+|.-...+. ....+|..++|+.++..||+- ...+..|++|-+.+-
T Consensus 258 ~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 258 AIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 76532 356788887543321 122569999999999999872 223344789987654
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.02 E-value=0.00039 Score=65.38 Aligned_cols=194 Identities=15% Similarity=0.214 Sum_probs=115.4
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCCCCCCCceEEEEECCCCCEE-EE--EEcCCceeEEEEcCC---eEEEEE-----CCe
Q 019672 47 GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RE--LNFLTSILAVRLNKK---RLVIVL-----REK 114 (337)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iwd~~~~~~~-~~--~~~~~~v~~i~~~~~---~~~v~~-----d~~ 114 (337)
..+.+++..++.+ .+..+| .++|.|.+-.++...-. .+ -.+..+.++++|++- .++++. |..
T Consensus 57 qy~kcva~~y~~d~cIlavG------~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVG------SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhc------cccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 4566677666665 222233 25788888877654322 22 233457788888653 333333 457
Q ss_pred EEEEECCCC--eee--eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc----ccccCceEEEEeCC-C
Q 019672 115 TYIYDANTL--AIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH----SHCEAPLAAIVLSS-N 185 (337)
Q Consensus 115 i~i~d~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~----~~~~~~i~~~~~s~-d 185 (337)
+.|||+.++ .+. ..+.+ .-..+...+++..+..++.++. ....+.++|++... .+.+..+..+.++| .
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm--~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGM--TSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCcccccccc-ccccCccccccccCcchhhccc--ccchhhhhhhhhhhhhhhhhhhhhcccceecCCC
Confidence 999999765 111 11222 1112223455555555555544 46789999998332 23346788899999 8
Q ss_pred CCEEEEEeCCCcEEEEEEc-CCCc-eeEeeccC--CcceeEEEEEeecCCCcccEEEEEeCC-CcEEEEecCC
Q 019672 186 GMYIATASEQGTIIRVFLV-SEAT-KSYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGF 253 (337)
Q Consensus 186 g~~lat~s~dg~~i~vwd~-~~~~-~~~~~~~~--~~~~~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l~~ 253 (337)
+.++++-+ ||. |-+||. .+-+ .+..+.+. ..+..+..++|+|... ..|++.+.| ++|+++++..
T Consensus 208 ~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--glla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--GLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--chhhhhccCcceEEEecccc
Confidence 88988766 775 689994 2222 12222111 1123488999999765 367777766 7899999864
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.96 E-value=0.069 Score=39.48 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=61.0
Q ss_pred EeeCCCc-cEEEEcCCCCccEEEEEEccCCcc--cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672 141 FSPSLNA-CFLAVPASTTKGSVLVYNVMELHS--HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT 217 (337)
Q Consensus 141 ~~~~~~~-~~la~~~~~~dg~v~i~d~~~~~~--~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~ 217 (337)
+.++.++ .-|++++ +|..|++|+-..... ..+..|.+++-... ..++.|-+.|+ |-+|+- .+.+.+.+..+
T Consensus 8 ~d~d~dg~~eLlvGs--~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~--~~RlWRiKSK~ 81 (111)
T PF14783_consen 8 FDFDGDGENELLVGS--DDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGT-VGVYDR--SQRLWRIKSKN 81 (111)
T ss_pred EecCCCCcceEEEec--CCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCE-EEEEeC--cceeeeeccCC
Confidence 3344443 2344444 699999998654321 12378888887776 57899999998 588875 44555554322
Q ss_pred cceeEEEEEe---ecCCCcccEEEEEeCCCcEEE
Q 019672 218 YPSTIFSLSF---GQSMQFQDILVATSSSGSLHV 248 (337)
Q Consensus 218 ~~~~i~~l~f---s~dg~~~~~las~s~dg~v~i 248 (337)
.+.++++ .-||. .-|++|-.+|.|-+
T Consensus 82 ---~~~~~~~~D~~gdG~--~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 82 ---QVTSMAFYDINGDGV--PELIVGWSNGKVEV 110 (111)
T ss_pred ---CeEEEEEEcCCCCCc--eEEEEEecCCeEEe
Confidence 2444443 34444 36999999988743
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.92 E-value=0.27 Score=43.98 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=123.4
Q ss_pred ceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE-----------CCeEEEEECCCCeeeeeecCCCCCceEE---
Q 019672 75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL-----------REKTYIYDANTLAILDTIDTVPNLKGLC--- 139 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~--- 139 (337)
+++.+.|..+++.+..+...- .-..++-+++.++++. .+-|.+||..+.....++..++.+...+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 589999999999888775432 1122333445565543 2369999999999888887655322211
Q ss_pred --EEeeCCCccEEEEcCCCCccEEEEEEccCCcccccCce-EEEEeCCCC-CEEEEEeCCCcEEEEEEcC-CCceeEeec
Q 019672 140 --AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPL-AAIVLSSNG-MYIATASEQGTIIRVFLVS-EATKSYSFR 214 (337)
Q Consensus 140 --~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~~~i-~~~~~s~dg-~~lat~s~dg~~i~vwd~~-~~~~~~~~~ 214 (337)
.+..+.++.++.+....-...|.|.|+...+.+.+-++ -|.-.=|.| +.+.+-|.||++. -..+. .|+...+..
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~-~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLL-TVTLDADGKEAQKST 175 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEE-EEEETSTSSEEEEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceE-EEEECCCCCEeEeec
Confidence 12233455555443322346788889888776654111 111111322 4588899999964 56665 565542221
Q ss_pred cCCc--cee-EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeecc
Q 019672 215 RGTY--PST-IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF 291 (337)
Q Consensus 215 ~~~~--~~~-i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 291 (337)
.-.+ ..+ ...=+++.++. .+.=-+-+|.|+--|+....... .+++..+. +.....-|.|.+.-. +
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~---~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t---~~e~~~~WrPGG~Q~----~ 243 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGG---RLYFVSYEGNVYSADLSGDSAKF--GKPWSLLT---DAEKADGWRPGGWQL----I 243 (342)
T ss_dssp EESSTTTS-B-S--EEETTTT---EEEEEBTTSEEEEEEETTSSEEE--EEEEESS----HHHHHTTEEE-SSS-----E
T ss_pred cccCCCCcccccccceECCCC---eEEEEecCCEEEEEeccCCcccc--cCcccccC---ccccccCcCCcceee----e
Confidence 1111 111 22224454444 45557888999988887654211 11111110 011123455544211 1
Q ss_pred CCCcccCEEEEEE--------eCCcEEEEEEecCCCCe-eceEE
Q 019672 292 PAGVKRASVSVIT--------YNGYFVEYIFSINNCCE-STWTL 326 (337)
Q Consensus 292 ~~~~~~~~l~~~~--------~dg~~~~~~~~~~~~~~-~~~~~ 326 (337)
+.++..++|++.- .|+.=.+|.+|.++.++ ..|.+
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l 287 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL 287 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC
Confidence 1223335555542 35566789898888875 33444
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0044 Score=58.47 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=62.1
Q ss_pred EEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc----ccCceE-EEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe
Q 019672 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLA-AIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 212 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~-~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~ 212 (337)
+.-+-++|.-.++|+.. .+|.|.+..+.-.+.- +..+++ +++|.|||++||.|=.||+ |++.|+.+|..+..
T Consensus 23 i~~~ewnP~~dLiA~~t--~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRT--EKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS 99 (665)
T ss_pred eEEEEEcCccchhheec--cCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence 34445566666777766 5787877776633321 224455 9999999999999999998 69999999988876
Q ss_pred eccCCcceeEEEEEeec
Q 019672 213 FRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 213 ~~~~~~~~~i~~l~fs~ 229 (337)
+.. .....|.++-|+|
T Consensus 100 ~~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLF-SVETDISKGIWDR 115 (665)
T ss_pred ccc-ccccchheeeccc
Confidence 421 2234577777863
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0062 Score=57.51 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=60.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE-EEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI-FSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i-~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
-.|.-+.|+|.-.+||++.++|.++ +.-+. .+++.++... ...+ .+++|.|||+ .||.|=.||+|++-|+++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gell-i~R~n-~qRlwtip~p--~~~v~~sL~W~~DGk---llaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELL-IHRLN-WQRLWTIPIP--GENVTASLCWRPDGK---LLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEE-EEEec-cceeEeccCC--CCccceeeeecCCCC---EEEEEecCCeEEEEEccC
Confidence 4577788999999999999999853 67666 7788877522 1234 4999999999 999999999999999987
Q ss_pred Ccc
Q 019672 254 AIN 256 (337)
Q Consensus 254 ~~~ 256 (337)
+..
T Consensus 94 ~~~ 96 (665)
T KOG4640|consen 94 GGR 96 (665)
T ss_pred CCc
Confidence 654
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.72 E-value=0.003 Score=35.78 Aligned_cols=29 Identities=34% Similarity=0.765 Sum_probs=25.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 174 EAPLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 174 ~~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
...|.++.|+|++.++++++.||. +++||
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 468999999999999999999997 68996
No 356
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.70 E-value=0.82 Score=46.06 Aligned_cols=275 Identities=12% Similarity=0.115 Sum_probs=140.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCce---EEEeCCCCcEEEEE--ee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDGF---KIFDSSTGRLCYER--AV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g~---~vw~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i 79 (337)
+..|....|--|..+|.++..+|. .++|..++.+--.+ +. .++..-.+...+.--+++.+ |+-..+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-------drP~vi 655 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-------DRPTVI 655 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-------CCCEEE
Confidence 345667778788889999998883 45566666542221 11 23332233222222222222 455555
Q ss_pred EECCCCCEEEE-EEcCC--ceeEEEE--cCCeEEEEECCeEEEEECCCCeee--eeecCCCCCceEEEEeeCCCccEEEE
Q 019672 80 FNTTTGTALRE-LNFLT--SILAVRL--NKKRLVIVLREKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 80 wd~~~~~~~~~-~~~~~--~v~~i~~--~~~~~~v~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
|-.. ++...+ +..+. .++.+.- -++.++.+..+.+++.-+..-+.+ +++..+..+..+ +..+....+++
T Consensus 656 Y~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI---~~q~~sl~~~v 731 (1096)
T KOG1897|consen 656 YSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRI---CYQESSLTFGV 731 (1096)
T ss_pred EecC-CcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhhe---EecccceEEEE
Confidence 5432 222221 11111 1111110 245666677777777766544332 233333333332 11111112221
Q ss_pred cC------------CCCccEEEEEEccCCccccc---------CceEEEEeCCC-CCEEEEEeC----------CCcEEE
Q 019672 153 PA------------STTKGSVLVYNVMELHSHCE---------APLAAIVLSSN-GMYIATASE----------QGTIIR 200 (337)
Q Consensus 153 ~~------------~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~d-g~~lat~s~----------dg~~i~ 200 (337)
.. ...-..++++|-++.+..+. -.|.++.|..| +++++.|.. .|++ -
T Consensus 732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRI-i 810 (1096)
T KOG1897|consen 732 LSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRI-I 810 (1096)
T ss_pred EecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceE-E
Confidence 11 00124577788777765432 44666678887 788888763 3663 4
Q ss_pred EEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecc
Q 019672 201 VFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD 280 (337)
Q Consensus 201 vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 280 (337)
||....++.+.......-.+.++++.-- +|+ +||+ -...|++|++.++++.+. ... ...|..
T Consensus 811 vfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk---llA~--In~~vrLye~t~~~eLr~---e~~---~~~~~~------ 872 (1096)
T KOG1897|consen 811 VFEFEELNSLELVAETVVKGAVYALVEF-NGK---LLAG--INQSVRLYEWTTERELRI---ECN---ISNPII------ 872 (1096)
T ss_pred EEEEecCCceeeeeeeeeccceeehhhh-CCe---EEEe--cCcEEEEEEccccceehh---hhc---ccCCeE------
Confidence 7777665444433222223345555432 465 5543 445799999988755431 000 011110
Q ss_pred cccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 281 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
++.-...++.|++|..-+.+....++.++++
T Consensus 873 ---------aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 873 ---------ALDLQVKGDEIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred ---------EEEEEecCcEEEEeeccceEEEEEEeccCCc
Confidence 1111234588999999999999999888876
No 357
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.68 E-value=0.0059 Score=37.78 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=29.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS 210 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~ 210 (337)
.+|.+++|+|...+||.|+.+|. |.|+.+ +++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence 67999999999999999999998 579988 66654
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.097 Score=48.86 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=81.9
Q ss_pred CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc----CCCCccEEEEEEccCCcc----c---c----cCce
Q 019672 113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP----ASTTKGSVLVYNVMELHS----H---C----EAPL 177 (337)
Q Consensus 113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~dg~v~i~d~~~~~~----~---~----~~~i 177 (337)
+.++-.|+..|+.+.+...+.. ..+..+.+..+...+... |- .+..|.-||.+-... . + ...-
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeeeeecccccccccc
Confidence 4677778888887777765543 234444443333222211 11 367788899874322 0 1 1556
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 178 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 178 ~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.|.+-..+| +||.||.+|. ||+||- .+..-++.-.+ -..+|..|..+.||+ +|++.. +.++-+-++.
T Consensus 434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGK---wil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGK---WILATC-KTYLLLIDTL 500 (644)
T ss_pred ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCc---EEEEec-ccEEEEEEEe
Confidence 777777776 7999999998 799997 55544443333 245799999999999 666554 5577777653
No 359
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.61 E-value=0.95 Score=45.64 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=116.9
Q ss_pred CCCceEEEEECCCC-CEEEEEEcCC--ceeEEE--Ec---CCeEEEEECCeEEEEECCCCeeeeeecC-CCCCceEEEEe
Q 019672 72 LSPRRLCLFNTTTG-TALRELNFLT--SILAVR--LN---KKRLVIVLREKTYIYDANTLAILDTIDT-VPNLKGLCAFS 142 (337)
Q Consensus 72 ~~d~~v~iwd~~~~-~~~~~~~~~~--~v~~i~--~~---~~~~~v~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~ 142 (337)
+.|+++|+.-..-+ ......+.++ .+..++ ++ +++++++.-+.-++..+...-....... ......+.+-.
T Consensus 379 ~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~ 458 (1096)
T KOG1897|consen 379 FKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCST 458 (1096)
T ss_pred CCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEc
Confidence 47999999754332 2233444444 444554 32 2456666666667777654311111110 01111121111
Q ss_pred eCCCccEEEEcCCCCccEEEEEEccCCcc--cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672 143 PSLNACFLAVPASTTKGSVLVYNVMELHS--HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
..++ +++-.. ...|++++-..... .....++..+.+.+...++.++.++. +-..++..+. +.+..+.....
T Consensus 459 i~g~-~lvQvT----s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~-l~y~~i~~~~-l~e~~~~~~e~ 531 (1096)
T KOG1897|consen 459 INGN-QLVQVT----SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLA-LFYLEIEDGG-LREVSHKEFEY 531 (1096)
T ss_pred cCCc-eEEEEe----cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccE-EEEEEeeccc-eeeeeeheecc
Confidence 2222 222221 34578777551111 11256666666777778888887775 3345666555 33332222345
Q ss_pred eEEEEEeecCCCccc---EEEEEeCCCcEEEEe-cCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcc
Q 019672 221 TIFSLSFGQSMQFQD---ILVATSSSGSLHVFS-PGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK 296 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~---~las~s~dg~v~iw~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 296 (337)
+|.|+.++|-|..++ ++++|..+..+.+-- ++...... ....-+..+|... ....+..+
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~----~~~l~~~~iPRSI-------------l~~~~e~d 594 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT----HEQLSGEIIPRSI-------------LLTTFEGD 594 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee----eeccCCCccchhe-------------eeEEeecc
Confidence 799999997643335 899998887765443 22211100 0000112223211 00111333
Q ss_pred cCEEEEEEeCCcEEEEEEecCCCCe
Q 019672 297 RASVSVITYNGYFVEYIFSINNCCE 321 (337)
Q Consensus 297 ~~~l~~~~~dg~~~~~~~~~~~~~~ 321 (337)
..+|+++..||.+..|.++..+++.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceE
Confidence 5899999999999999999888863
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.68 Score=42.81 Aligned_cols=173 Identities=12% Similarity=0.108 Sum_probs=117.0
Q ss_pred CCceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (337)
.++.|.+.|..+.+.............+.++++ .+.++. ++.+.+.|-.+.+.+..+.....+ ..+..+|+
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~ 170 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPD 170 (381)
T ss_pred CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCC
Confidence 478999999888888887766655666777654 455554 367888888888887776543334 44455666
Q ss_pred ccEEEEcCCCCccEEEEEEccCCcccc-c--------CceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCceeEe-e
Q 019672 147 ACFLAVPASTTKGSVLVYNVMELHSHC-E--------APLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYS-F 213 (337)
Q Consensus 147 ~~~la~~~~~~dg~v~i~d~~~~~~~~-~--------~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~~~-~ 213 (337)
+..+..... .++.|.+.|.......+ . ..-..++++|+|+++...... ++ +.+.|..++..... .
T Consensus 171 g~~vyv~~~-~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~ 248 (381)
T COG3391 171 GNKVYVTNS-DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDL 248 (381)
T ss_pred CCeEEEEec-CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEecc
Confidence 665555543 58999999987665442 1 345678999999976665443 34 57889888877654 2
Q ss_pred ccCCcceeEEEEEeecCCCcccEEEEE-eCCCcEEEEecCCCc
Q 019672 214 RRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFAI 255 (337)
Q Consensus 214 ~~~~~~~~i~~l~fs~dg~~~~~las~-s~dg~v~iw~l~~~~ 255 (337)
..+. . ....++++|+|+ ++-+. +..+.+.+-|..+..
T Consensus 249 ~~~~-~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 249 PVGS-G-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cccc-C-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCc
Confidence 2221 1 234679999999 66665 445889998877643
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.51 E-value=0.012 Score=36.44 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=28.3
Q ss_pred ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.++|.+++|+|... +||.++.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~md---LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD---LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC---EEEEEECCCeEEEEECC
Confidence 45699999999998 99999999999999984
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.6 Score=41.67 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=92.6
Q ss_pred CceEEEEECCCCCEEEEEEcCCceeE-EEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCC---CceEEEEeeCCCccE
Q 019672 74 PRRLCLFNTTTGTALRELNFLTSILA-VRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNACF 149 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~~v~~-i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 149 (337)
.+.|.-||..+++ ...+..+..+.+ ..++..+.+++.+..+++++..++..+..+..... .........+|++.+
T Consensus 46 ~~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~ 124 (307)
T COG3386 46 GGRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI 124 (307)
T ss_pred CCeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence 6788888887665 334445554444 44577778888888888888865554323211111 011112233455555
Q ss_pred EEEcCC---------CCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC--CceeE--
Q 019672 150 LAVPAS---------TTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATKSY-- 211 (337)
Q Consensus 150 la~~~~---------~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~--~~~~~-- 211 (337)
.+..-. ..-|.|.-+|. .+.... -..-+.|+|||||+.|..+-.....|.-|++.. +..-.
T Consensus 125 wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~ 203 (307)
T COG3386 125 WFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR 203 (307)
T ss_pred EEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc
Confidence 443221 12343444443 222211 144588999999998888776644455565542 21110
Q ss_pred -eeccCCcceeEEEEEeecCCCcccEEEEEeCCC-cEEEEecC
Q 019672 212 -SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPG 252 (337)
Q Consensus 212 -~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~v~iw~l~ 252 (337)
.+.....+...-.++...+|. +.+++-..| .|++|+.+
T Consensus 204 ~~~~~~~~~G~PDG~~vDadG~---lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 204 GFVDFDEEPGLPDGMAVDADGN---LWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred eEEEccCCCCCCCceEEeCCCC---EEEecccCCceEEEECCC
Confidence 011111122234566777887 554444444 89999876
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.26 Score=46.17 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=92.1
Q ss_pred ceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672 75 RRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (337)
..+.++|+.+++......+...-..-.|+|+ .++++. ++ .|+++|+...+..+ +........ .=+++|++.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~--~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINT--SPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcccc--CccCCCCCC
Confidence 4699999999887666666665555667764 455555 44 68888998766333 322211111 334567888
Q ss_pred EEEEcCCCCccE--EEEEEccCCcccc--c--CceEEEEeCCCCCEEEEEeCC-Cc-EEEEEEcCCCceeEeeccCCcce
Q 019672 149 FLAVPASTTKGS--VLVYNVMELHSHC--E--APLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPS 220 (337)
Q Consensus 149 ~la~~~~~~dg~--v~i~d~~~~~~~~--~--~~i~~~~~s~dg~~lat~s~d-g~-~i~vwd~~~~~~~~~~~~~~~~~ 220 (337)
.+++.+. ..|. |.++|+....... . ..-..-.+||||++|+-.+.. |. .|-+.|+.++..+..+....
T Consensus 295 ~ivf~Sd-r~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~--- 370 (425)
T COG0823 295 KIVFTSD-RGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY--- 370 (425)
T ss_pred EEEEEeC-CCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc---
Confidence 8887764 3555 4555665443211 1 222267789999999987753 32 24466776665444443221
Q ss_pred eEEEEEeecCCCcccEEEEEeCC
Q 019672 221 TIFSLSFGQSMQFQDILVATSSS 243 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~d 243 (337)
....-.|.|+|. .+...+..
T Consensus 371 ~~e~ps~~~ng~---~i~~~s~~ 390 (425)
T COG0823 371 LNESPSWAPNGR---MIMFSSGQ 390 (425)
T ss_pred cCCCCCcCCCCc---eEEEeccC
Confidence 123446777777 44444433
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.0097 Score=58.15 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=74.8
Q ss_pred eCCCccEEEEcC--CCCccEEEEEEccCCccc--cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC
Q 019672 143 PSLNACFLAVPA--STTKGSVLVYNVMELHSH--CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG 216 (337)
Q Consensus 143 ~~~~~~~la~~~--~~~dg~v~i~d~~~~~~~--~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~ 216 (337)
++|-.+++|+++ ....|.|.||-- ++.+. -+ -.+++++|+|..-.||.|-+-|. +.+|...+.+. .+.. .
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-htv~-~ 98 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HTVV-E 98 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEec-CCCCCcccccceehhhhccChHHHHHhhccccce-eEEEecCCcee-eeec-c
Confidence 444445555443 223688988832 23222 12 34678999999888999988886 68999876543 4443 3
Q ss_pred CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 217 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 217 ~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.|+++|.-+.|||+|. .|.++..-|.|++|....
T Consensus 99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CCCCCceeEEecCCCC---eEEEcCCCceeEEEEeee
Confidence 4678899999999999 999999999999999874
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.39 E-value=0.52 Score=43.69 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=89.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC----------EEEEEE---ccCC----CEEEEEeCCC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA----------FSIVEM---LYSS----SLLAIVGAGE 68 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~----------~~~~~~---~~~~----~~~~~~~~g~ 68 (337)
.++|++++.| |=-++|+|.++| +.|.|+..-..++...... +..+++ .+.. ....+++.
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT-- 162 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT-- 162 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE--
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe--
Confidence 6899999987 556899999887 6999998778888754322 222222 1221 34555655
Q ss_pred CCCCCCceEEEEECC--C-CCEEEE----E-EcCCceeEEE-EcC-----------------------CeEEEEECCeEE
Q 019672 69 QPSLSPRRLCLFNTT--T-GTALRE----L-NFLTSILAVR-LNK-----------------------KRLVIVLREKTY 116 (337)
Q Consensus 69 ~~~~~d~~v~iwd~~--~-~~~~~~----~-~~~~~v~~i~-~~~-----------------------~~~~v~~d~~i~ 116 (337)
..|.+.+|.+. . +..... . ...++|..|. ++. ..++++++..++
T Consensus 163 ----n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 163 ----NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp ----TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred ----CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 46888888754 1 222211 1 2344555554 221 145556699999
Q ss_pred EEECCCCeeeeeecCCCCCceEEEEee---CCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCC
Q 019672 117 IYDANTLAILDTIDTVPNLKGLCAFSP---SLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSS 184 (337)
Q Consensus 117 i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~ 184 (337)
++...+.+..+......-....+++.+ ...+..|++-- .+|.|++|.+...+.+.. ..+...+|++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 999988776665542211112223321 11233344333 489999999988776533 2234455566
Q ss_pred CCCEEEEEeC
Q 019672 185 NGMYIATASE 194 (337)
Q Consensus 185 dg~~lat~s~ 194 (337)
+|..++-.+.
T Consensus 317 ~Gdi~~~~gp 326 (395)
T PF08596_consen 317 NGDIFYWTGP 326 (395)
T ss_dssp TS-EEEE-SS
T ss_pred CCCEEEEeCc
Confidence 6665544433
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.35 E-value=0.016 Score=56.68 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=65.0
Q ss_pred CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCC
Q 019672 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNG 186 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg 186 (337)
.|+|.||- .+|++.+.+.-+ ....+++++|....||.+= +-|.+.+|...+.+. .|+.+|..+.|||+|
T Consensus 40 ~GSVtIfa-dtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gw--e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G 113 (1416)
T KOG3617|consen 40 GGSVTIFA-DTGEPQRDVTYP---VHATSLCWHPEEFVLAQGW--EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG 113 (1416)
T ss_pred CceEEEEe-cCCCCCcccccc---eehhhhccChHHHHHhhcc--ccceeEEEecCCceeeeeccCCCCCceeEEecCCC
Confidence 57888883 556655554332 3345678888887777664 578999998776543 355999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcC
Q 019672 187 MYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 187 ~~lat~s~dg~~i~vwd~~ 205 (337)
..|.|+..-|. +.+|...
T Consensus 114 ~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 114 TVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred CeEEEcCCCce-eEEEEee
Confidence 99999999997 5899765
No 367
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.33 E-value=0.33 Score=48.42 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC----------CCce--eEe-ec------cCCcceeEEEEEeecCCCccc
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVS----------EATK--SYS-FR------RGTYPSTIFSLSFGQSMQFQD 235 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~----------~~~~--~~~-~~------~~~~~~~i~~l~fs~dg~~~~ 235 (337)
..|..|.+||+|++||-.+..|-. |-.+. .|+. ..+ +. .......|..+.|+|.+..-.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~--V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV--VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE--EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 568999999999999999998843 44442 1221 111 10 111234689999999851112
Q ss_pred EEEEEeCCCcEEEEecCCCcccC
Q 019672 236 ILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 236 ~las~s~dg~v~iw~l~~~~~~~ 258 (337)
.|++-..|+++++||+.....+.
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCe
Confidence 89999999999999997655443
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.32 E-value=0.61 Score=40.23 Aligned_cols=187 Identities=15% Similarity=0.145 Sum_probs=96.6
Q ss_pred CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCe-EEEEE--CCeEEEEECCC
Q 019672 48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKR-LVIVL--REKTYIYDANT 122 (337)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~-~~v~~--d~~i~i~d~~~ 122 (337)
++.-+.+.++.+.++.+.. .++.|.-.+. +|+.+.++.+.. ..-+|.+-.+. +++.. ++.+.++++..
T Consensus 23 e~SGLTy~pd~~tLfaV~d------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -EEEEEEETTTTEEEEEET------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CccccEEcCCCCeEEEEEC------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4556667677788888887 3788888886 588888887764 67778776544 44444 56888888832
Q ss_pred C------eeeeeec--CC-CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC---Ccc-------------cccCce
Q 019672 123 L------AILDTID--TV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME---LHS-------------HCEAPL 177 (337)
Q Consensus 123 ~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~---~~~-------------~~~~~i 177 (337)
. .....+. .. .+..+.-.++.++.+..+..+- +..-..+|.+.. ... .....+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k--E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK--ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE--ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe--CCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 1 1112222 22 2334556667776655544442 233345554432 111 011668
Q ss_pred EEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEee--ccCCcc-----eeEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672 178 AAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSF--RRGTYP-----STIFSLSFGQSMQFQDILVATSSSGSLHVF 249 (337)
Q Consensus 178 ~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~--~~~~~~-----~~i~~l~fs~dg~~~~~las~s~dg~v~iw 249 (337)
.+++++|. |++++...+.. .+-.+| .+|+.+..+ ..+.+. ..--.|+|.++|. |...|.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~-~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~----LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESR-LLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN----LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTT-EEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCC-eEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC----EEEEcCCceEEEe
Confidence 99999996 45555555554 456788 567765544 332211 1356899999998 4444555555554
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.06 E-value=1.1 Score=40.85 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=43.7
Q ss_pred ccEEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCC---------------cEEEEEEcCCCceeEeec-----
Q 019672 158 KGSVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQG---------------TIIRVFLVSEATKSYSFR----- 214 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg---------------~~i~vwd~~~~~~~~~~~----- 214 (337)
+..|.-+|+.++.... . .+...+-.++||+++|-=+.|. ..|++++++.++...-.+
T Consensus 263 ~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw 342 (386)
T PF14583_consen 263 DFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSW 342 (386)
T ss_dssp -EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-----
T ss_pred ceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcc
Confidence 3445556666554321 1 3455666689999887544431 145678888776432111
Q ss_pred ---cCCc-ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 215 ---RGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 215 ---~~~~-~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.++. ... ....|||||+. .|.++...|...||-++
T Consensus 343 ~v~~~~~q~~h-Php~FSPDgk~--VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 343 KVLDGDRQVTH-PHPSFSPDGKW--VLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp --BTTBSSTT-----EE-TTSSE--EEEEE-TTSS-EEEEEE
T ss_pred eeecCCCccCC-CCCccCCCCCE--EEEECCCCCCccEEEEe
Confidence 1100 011 24689999992 56666667888887553
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.99 E-value=0.94 Score=44.38 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=59.9
Q ss_pred EEeeCCCccEEEEcC------CCCccEEEEEEccCCcccc--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672 140 AFSPSLNACFLAVPA------STTKGSVLVYNVMELHSHC--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY 211 (337)
Q Consensus 140 ~~~~~~~~~~la~~~------~~~dg~v~i~d~~~~~~~~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~ 211 (337)
....++++..+|+.. .+....+.+++........ ....+.-.|+|||+.|++.+....+.++.+-.....+.
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~ 433 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA 433 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCceEE
Confidence 334456676766553 1112356666653222111 13478889999999998887543434444332222222
Q ss_pred eec--cC----CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 212 SFR--RG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 212 ~~~--~~----~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
.+. .+ .....|.++.|||||. .+|.-. +|.|+|=-
T Consensus 434 ~~~vd~ge~~~~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 434 RTPVDASAVASRVPGPISELQLSRDGV---RAAMII-GGKVYLAV 474 (591)
T ss_pred EEeccCchhhhccCCCcCeEEECCCCC---EEEEEE-CCEEEEEE
Confidence 111 00 1123599999999999 888766 47777633
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.97 E-value=0.22 Score=46.16 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=54.4
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec--c----CCcceeEEEEEee-----cCCCcccEEEEEeCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR--R----GTYPSTIFSLSFG-----QSMQFQDILVATSSS 243 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~--~----~~~~~~i~~l~fs-----~dg~~~~~las~s~d 243 (337)
++|++++.|.-| ++|.|.++|++ -|.|++....++.-. . ......|+++.|+ .|+..+-.|++|.+.
T Consensus 87 g~vtal~~S~iG-Fvaigy~~G~l-~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 87 GPVTALKNSDIG-FVAIGYESGSL-VVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -SEEEEEE-BTS-EEEEEETTSEE-EEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CcEeEEecCCCc-EEEEEecCCcE-EEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 899999998555 99999999985 699998888776521 1 1123358888887 344333479999999
Q ss_pred CcEEEEecC
Q 019672 244 GSLHVFSPG 252 (337)
Q Consensus 244 g~v~iw~l~ 252 (337)
|.+.+|.+-
T Consensus 165 G~v~~fkIl 173 (395)
T PF08596_consen 165 GNVLTFKIL 173 (395)
T ss_dssp SEEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999999874
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.43 Score=41.35 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=45.9
Q ss_pred EEcCCCCEEEEEcCC-----ce-EEEeCCCC-cEEEEEeeCCEE--EEEEccCCCEEEEEeCCCC--C---------CCC
Q 019672 14 SFNQDNSGFALSTKD-----GF-KIFDSSTG-RLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQ--P---------SLS 73 (337)
Q Consensus 14 ~fs~dg~~la~g~~~-----g~-~vw~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~--~---------~~~ 73 (337)
.|+|||.+|.+..+| |+ -|||...+ +.+-++..++++ -+.+..++..++.+.||-. | .+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 589999998876543 34 79997643 333334333333 2334557777777666421 1 122
Q ss_pred CceEEEEECCCCCEEEEEEcC
Q 019672 74 PRRLCLFNTTTGTALRELNFL 94 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~ 94 (337)
.-.+.+.|..+|..+.+...+
T Consensus 200 ePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred CccEEEEeccccchhhhccCc
Confidence 334666666666666554433
No 373
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.32 Score=45.52 Aligned_cols=133 Identities=17% Similarity=0.067 Sum_probs=76.7
Q ss_pred CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE--EEEEccCCcccc--c--CceEEEEeCCCC
Q 019672 113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV--LVYNVMELHSHC--E--APLAAIVLSSNG 186 (337)
Q Consensus 113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v--~i~d~~~~~~~~--~--~~i~~~~~s~dg 186 (337)
..++++|+.+++.........+ ..+-.++||+..++++.. .||.. .++|+....... . +.-..=.|+|||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSS-RDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEEC-CCCCccEEEEcCCCCcceecccCCccccCccCCCCC
Confidence 3699999988865544442222 223456677788887765 45654 555776654321 1 222355789999
Q ss_pred CEEEEEeCCCcE--EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCc--EEEEecCCCc
Q 019672 187 MYIATASEQGTI--IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGS--LHVFSPGFAI 255 (337)
Q Consensus 187 ~~lat~s~dg~~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~--v~iw~l~~~~ 255 (337)
++|+-.|+.+.. |.+.|.+.++. ..+........ .-.+||||+ +|+..+. +|. |-+.++..+.
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~--~p~~SpdG~---~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS--NPVWSPDGD---KIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc--CccCCCCCC---EEEEEeccCCceeeEEeccCCCC
Confidence 999988765432 34556655543 33322211111 557999999 7776664 344 5555554433
No 374
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.67 E-value=1.3 Score=38.31 Aligned_cols=151 Identities=11% Similarity=0.124 Sum_probs=85.5
Q ss_pred CceeEEEEcC--CeEEEEEC--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672 95 TSILAVRLNK--KRLVIVLR--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170 (337)
Q Consensus 95 ~~v~~i~~~~--~~~~v~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~ 170 (337)
..+.+|.+++ +.++++.| +.|..++. +++.++.+.... ....-++..-+++.++++.. .++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDT 97 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEET--TTTEEEEEEE----
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEc--CCCcEEEEEEeccc
Confidence 3689999986 45666664 47877886 477887775432 12233444456666766654 37888888873221
Q ss_pred c----c------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC---CceeEee-----c-cCCcceeEEEE
Q 019672 171 S----H------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE---ATKSYSF-----R-RGTYPSTIFSL 225 (337)
Q Consensus 171 ~----~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~---~~~~~~~-----~-~~~~~~~i~~l 225 (337)
. . ....+-.++|+|.++.|..+-+..- .+|+.+.. +..+... . .......+.++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceeccccce
Confidence 1 0 0145889999999888888877765 46776653 2221111 1 01112247889
Q ss_pred EeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 226 SFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 226 ~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+|+|... .+++.+.....|.++|.+
T Consensus 177 ~~~p~t~--~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 177 SYDPRTG--HLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEETTTT--EEEEEETTTTEEEEE-TT
T ss_pred EEcCCCC--eEEEEECCCCeEEEECCC
Confidence 9998765 377777777889888843
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.65 E-value=1.8 Score=40.08 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=85.1
Q ss_pred CEEEEEeCCCCCCCCCceEEEEECCCC----CEEEEEEcC--------CceeEEEEcCCe-EEEEE--------CCeEEE
Q 019672 59 SLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELNFL--------TSILAVRLNKKR-LVIVL--------REKTYI 117 (337)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~----~~~~~~~~~--------~~v~~i~~~~~~-~~v~~--------d~~i~i 117 (337)
+++++-+- ..++|.|.|+.+. +..+.++-. +.-..+..-+++ +++.. .+.+.+
T Consensus 88 r~Li~PgL------~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 88 RYLILPGL------RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -EEEEEBT------TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred CcEEeeee------ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence 45555443 5789999998743 333333310 011112223443 44432 236888
Q ss_pred EECCCCeeeeeecCCCC-CceEEEEeeCCCccEEEEcCC------------------CCccEEEEEEccCCccccc----
Q 019672 118 YDANTLAILDTIDTVPN-LKGLCAFSPSLNACFLAVPAS------------------TTKGSVLVYNVMELHSHCE---- 174 (337)
Q Consensus 118 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~------------------~~dg~v~i~d~~~~~~~~~---- 174 (337)
+|-.+.+.....+.... ...-..+-..|....++++.- .-..++.+||+.+.+..+.
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 88887777766654322 122234444555556665530 0246899999999887654
Q ss_pred ---CceEEEEeC--CCCCEEEEEe-CCCcEEEEEEcCCCc----eeEeeccC---------------CcceeEEEEEeec
Q 019672 175 ---APLAAIVLS--SNGMYIATAS-EQGTIIRVFLVSEAT----KSYSFRRG---------------TYPSTIFSLSFGQ 229 (337)
Q Consensus 175 ---~~i~~~~~s--~dg~~lat~s-~dg~~i~vwd~~~~~----~~~~~~~~---------------~~~~~i~~l~fs~ 229 (337)
.....|.|. |+..+=.+|+ -.+++.++|....++ ++.++... .-+.-|+.+..|.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 235566664 5555544443 344444555544453 22222100 0023489999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672 230 SMQFQDILVATSSSGSLHVFSPGFAINQR 258 (337)
Q Consensus 230 dg~~~~~las~s~dg~v~iw~l~~~~~~~ 258 (337)
|.++ +.++.=.+|.|+-||+..+.+++
T Consensus 322 DDrf--LYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 322 DDRF--LYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp TS-E--EEEEETTTTEEEEEE-SSTTS-E
T ss_pred CCCE--EEEEcccCCcEEEEecCCCCCCc
Confidence 9994 55666778999999999887765
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.57 E-value=0.65 Score=34.39 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=57.1
Q ss_pred CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672 57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPN 134 (337)
Q Consensus 57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~ 134 (337)
++..-+++++ .|..||+|+-. +.+.+++..+.|..+.- .+..+..+. .|+|-+|+-. +.+..++....
T Consensus 13 dg~~eLlvGs------~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~ 82 (111)
T PF14783_consen 13 DGENELLVGS------DDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQ 82 (111)
T ss_pred CCcceEEEec------CCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCC
Confidence 3334455655 69999999754 67888888888888765 445555555 7899999753 33445554444
Q ss_pred CceEEEEeeCCCccE-EEEcCCCCccEEE
Q 019672 135 LKGLCAFSPSLNACF-LAVPASTTKGSVL 162 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~-la~~~~~~dg~v~ 162 (337)
+..+..+..+.++.. |+++= .+|.|-
T Consensus 83 ~~~~~~~D~~gdG~~eLI~Gw--snGkve 109 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGW--SNGKVE 109 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEe--cCCeEE
Confidence 445555555554433 33332 356553
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=0.074 Score=44.37 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=64.6
Q ss_pred EEEEcCCCCccEEEEEEccCCccc----c--cCceEE-EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-e
Q 019672 149 FLAVPASTTKGSVLVYNVMELHSH----C--EAPLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-S 220 (337)
Q Consensus 149 ~la~~~~~~dg~v~i~d~~~~~~~----~--~~~i~~-~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~ 220 (337)
-+++++ .+|.|.+|...-.-.. . ..+|.+ +.--.++.+..+++.||. ||.|+++-++.+... +++. .
T Consensus 72 ~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~--g~h~~~ 146 (238)
T KOG2444|consen 72 KLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYV--GQHNFE 146 (238)
T ss_pred eEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeee--ccccCC
Confidence 444454 5899999987622111 1 134433 333456678889999997 799999988876543 2233 3
Q ss_pred eEEEEEeecCCCcccEEEEE--eCCCcEEEEecCCCcc
Q 019672 221 TIFSLSFGQSMQFQDILVAT--SSSGSLHVFSPGFAIN 256 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~--s~dg~v~iw~l~~~~~ 256 (337)
++..+..+..+. +++.+ |.|..++.|+++....
T Consensus 147 ~~e~~ivv~sd~---~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 147 SGEELIVVGSDE---FLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred CcceeEEecCCc---eEEeeccccchhhhhcchhhhhc
Confidence 444445555566 78888 8888888898876554
No 378
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.36 E-value=0.11 Score=49.95 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=84.0
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
..|.--+++..+++|+.|++-|. +.+|+-..++....-..+ ....+..+..|++.. ++|+|+..|.|-||.+...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~---lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEY---LVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred ceEEEEEeecCCceEEEecccce-EEEEecCchhhhcccccC-ccceEEEEEecchhH---hhhhhcCCceEEeehhhcc
Confidence 44555566778899999999997 589997776654322222 233466778899988 8999999999999998773
Q ss_pred cccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672 255 INQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 316 (337)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~ 316 (337)
..+. ..|+... . ..+...+.++.+.+++.++++|..-|+|..-.|+.
T Consensus 109 ~p~~-----~~~~t~~-d---------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRD-----LDYVTPC-D---------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCc-----ceeeccc-c---------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3322 1111100 0 01334455566666779999999999999999987
No 379
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.33 E-value=0.066 Score=32.14 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=26.8
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
.|.++.|||+....++|+-+-..|.|+|+|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999975432348999988999999999853
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.33 E-value=1.9 Score=42.31 Aligned_cols=110 Identities=20% Similarity=0.154 Sum_probs=63.6
Q ss_pred EEEEeeCCCccEEEEcC----------CCCccEEEEEEccCCccc--ccCceEEEEeCCCCCEEEEEeCCCcEEEE---E
Q 019672 138 LCAFSPSLNACFLAVPA----------STTKGSVLVYNVMELHSH--CEAPLAAIVLSSNGMYIATASEQGTIIRV---F 202 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~~----------~~~dg~v~i~d~~~~~~~--~~~~i~~~~~s~dg~~lat~s~dg~~i~v---w 202 (337)
...-+++|++..+++.. ....+.+.+.++..+... ....|..+.|||||++||... +|. +.| -
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vv 476 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGK-VYLAVVE 476 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEE
Confidence 34445566655554442 112345655566544332 136799999999999999877 465 445 4
Q ss_pred EcCCCce-e---EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 203 LVSEATK-S---YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 203 d~~~~~~-~---~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
....|+. + .++..+ ....+.++.|.+++. |+++..++...+|.+.-.
T Consensus 477 r~~~G~~~l~~~~~l~~~-l~~~~~~l~W~~~~~----L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 477 QTEDGQYALTNPREVGPG-LGDTAVSLDWRTGDS----LVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred eCCCCceeecccEEeecc-cCCccccceEecCCE----EEEEecCCCCceEEEecC
Confidence 4455641 1 111111 112357899999997 456666666667766543
No 381
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.30 E-value=2.2 Score=38.90 Aligned_cols=215 Identities=12% Similarity=0.079 Sum_probs=110.0
Q ss_pred cCCCCEEEEEcC----------CceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672 16 NQDNSGFALSTK----------DGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (337)
Q Consensus 16 s~dg~~la~g~~----------~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~ 84 (337)
|||+++++...+ ..+.|||+++++...-.. ........++++++.++++.+ +.|.+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~--------~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD--------NNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET--------TEEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec--------CceEEEECCC
Confidence 689998777432 235789999876532211 345666788899999999864 7999999887
Q ss_pred CCEEEEEEcCC-------------------ceeEEEEcCCeEEE--EE--CCeEEEEECCCCeeeeeecCCC-CCceEEE
Q 019672 85 GTALRELNFLT-------------------SILAVRLNKKRLVI--VL--REKTYIYDANTLAILDTIDTVP-NLKGLCA 140 (337)
Q Consensus 85 ~~~~~~~~~~~-------------------~v~~i~~~~~~~~v--~~--d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~ 140 (337)
++. ..++..+ .-.++.|+|+.-.+ .. +..+..+.+.. ..... ....+..
T Consensus 73 ~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 73 GQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVES 145 (353)
T ss_dssp SEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEE
T ss_pred CCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccc
Confidence 743 3333211 12345666654322 22 33333333210 00000 0001222
Q ss_pred EeeCCCccEEEEcCCC-CccEEEEEEccCCcccc----------cCceEEEEeCCCCCEEEE--EeCCCc--EEEEEEcC
Q 019672 141 FSPSLNACFLAVPAST-TKGSVLVYNVMELHSHC----------EAPLAAIVLSSNGMYIAT--ASEQGT--IIRVFLVS 205 (337)
Q Consensus 141 ~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~~----------~~~i~~~~~s~dg~~lat--~s~dg~--~i~vwd~~ 205 (337)
+.. ..+|.. ..-.+.|+|+.+++... ...+..+.|.++++.|+. .+.+.+ .+.+.|..
T Consensus 146 ~~Y-------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 IRY-------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp EE---------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred ccc-------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 221 011210 12235667887765421 156899999999983333 333332 24567887
Q ss_pred CCceeEeeccCCcce---eEEEEEee-cCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 206 EATKSYSFRRGTYPS---TIFSLSFG-QSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~---~i~~l~fs-~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+++.-..++.. ... .-....|. +++. .+|.....+|.-||+-++...
T Consensus 219 tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~--~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 219 TGETRVVLEET-SDGWVDVYDPPHFLGPDGN--EFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp TTTCEEEEEEE-SSSSSSSSSEEEE-TTTSS--EEEEEEETTSSEEEEEEETTS
T ss_pred CCceeEEEEec-CCcceeeecccccccCCCC--EEEEEEEcCCCcEEEEEcccc
Confidence 77643222111 111 11234444 6666 388888888988888765443
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.27 E-value=0.085 Score=48.25 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=57.1
Q ss_pred ccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc---------------
Q 019672 158 KGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--------------- 218 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~--------------- 218 (337)
.+.+.|||+.+++.... ..+....|||+|+.+|-... +. |.+++..+++..+--..|..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~n-ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NN-LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TE-EEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-Cc-eEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 57799999998764322 57899999999999999875 45 57999887754332221200
Q ss_pred ceeEEEEEeecCCCcccEEEEEeCC-CcEEEEec
Q 019672 219 PSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSP 251 (337)
Q Consensus 219 ~~~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l 251 (337)
-..-..+.|||||+ +||....| ..|+.+.+
T Consensus 100 ~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 100 FDRRSAVWWSPDSK---YLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEE
T ss_pred cccccceEECCCCC---EEEEEEECCcCCceEEe
Confidence 00114578999999 77777655 44665554
No 383
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.24 E-value=1.7 Score=37.24 Aligned_cols=107 Identities=10% Similarity=0.084 Sum_probs=66.8
Q ss_pred CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672 57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPN 134 (337)
Q Consensus 57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~ 134 (337)
++..+++++. -.+.+.--|.++|+.+-+......+.+-+. -+|.+++.- .+.+++.+.+++.+...+...+.
T Consensus 21 dskT~v~igS------Hs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 21 DSKTLVVIGS------HSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred CCceEEEEec------CCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3444445544 367888889999988776555554433222 345544433 88999999999977776654332
Q ss_pred CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc
Q 019672 135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~ 173 (337)
...-+ ..++++.++..++ .|+.....|.++...+-
T Consensus 95 -vk~~a-~~d~~~glIycgs--hd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 95 -VKVRA-QCDFDGGLIYCGS--HDGNFYALDPKTYGCVY 129 (354)
T ss_pred -hccce-EEcCCCceEEEec--CCCcEEEecccccceEE
Confidence 12222 2244555665554 69999999998876553
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.23 E-value=3.2 Score=40.21 Aligned_cols=225 Identities=11% Similarity=0.110 Sum_probs=121.6
Q ss_pred EEEEEcCC-ceEEEeCCCCcEEEEEeeCCE----EEEE--EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc
Q 019672 21 GFALSTKD-GFKIFDSSTGRLCYERAVGAF----SIVE--MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF 93 (337)
Q Consensus 21 ~la~g~~~-g~~vw~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~ 93 (337)
.+.+++.+ .+.-+|.++|+++........ .+.. +.. .+.+++...+.. ...++.|..+|.++|+.+-++..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence 44555544 468889999998876543211 1100 011 223332222100 01368999999999988765432
Q ss_pred CC--------------------------------cee-EEEEcC--CeEEEEE-------------CC----eEEEEECC
Q 019672 94 LT--------------------------------SIL-AVRLNK--KRLVIVL-------------RE----KTYIYDAN 121 (337)
Q Consensus 94 ~~--------------------------------~v~-~i~~~~--~~~~v~~-------------d~----~i~i~d~~ 121 (337)
-. .+. .+.+++ +.+++.+ |+ +|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 10 111 123333 2344433 12 67777889
Q ss_pred CCeeeeeecCCCCC---------ceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCccccc-------------C---
Q 019672 122 TLAILDTIDTVPNL---------KGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCE-------------A--- 175 (337)
Q Consensus 122 ~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~~-------------~--- 175 (337)
+++....++..++. ..+..+..++. ...++.+. .+|.+.+.|-.+++.+.. .
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 99887776553321 11222222221 13565665 489999999988775310 0
Q ss_pred --ce----------------------------EEEEeCCCCCEEEEEeCC------------------------------
Q 019672 176 --PL----------------------------AAIVLSSNGMYIATASEQ------------------------------ 195 (337)
Q Consensus 176 --~i----------------------------~~~~~s~dg~~lat~s~d------------------------------ 195 (337)
++ ..++++|+..++.....+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 01 126677766555443332
Q ss_pred ---CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 196 ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 196 ---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
|. +.-+|+.+|+.+.++...... .-+. ..-.+. .++.++.+|.++.+|.++++.
T Consensus 438 ~~~g~-l~AiD~~tGk~~W~~~~~~p~--~~~~-l~t~g~---lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 438 DHMGS-LIAWDPITGKIVWEHKEDFPL--WGGV-LATAGD---LVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred CCcee-EEEEeCCCCceeeEecCCCCC--CCcc-eEECCc---EEEEECCCCeEEEEECCCCCE
Confidence 33 457888888887766533211 1111 112445 677788899999999998865
No 385
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=1.5 Score=36.33 Aligned_cols=157 Identities=9% Similarity=0.082 Sum_probs=89.7
Q ss_pred CCceEEEEECCCCCEEEEEEcCC-cee--EEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672 73 SPRRLCLFNTTTGTALRELNFLT-SIL--AVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~-~v~--~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (337)
.-..|+.||+.+|+.+.+-+... .+. .+.-.++.+...+ ++..+.||..+.+.+..+.-..+ -.+++.++.+
T Consensus 66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge---GWgLt~d~~~ 142 (262)
T COG3823 66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE---GWGLTSDDKN 142 (262)
T ss_pred ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc---ceeeecCCcc
Confidence 35689999999999988766552 232 2333456666666 88999999998887777654333 2445554443
Q ss_pred cEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc--
Q 019672 148 CFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-- 215 (337)
Q Consensus 148 ~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-- 215 (337)
++-+.| ..+++.-|..+.....+ ..++.+.| -||...|-.=.+.++ -.-|.++|+.+..+..
T Consensus 143 -LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I-~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 143 -LIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRI-ARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred -eEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecce-EEEcCCCCcEEEEEEccC
Confidence 333322 34555556655443221 22333333 256666655555443 3456667765543321
Q ss_pred --------CCcceeEEEEEeecCCCcccEEEEE
Q 019672 216 --------GTYPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 216 --------~~~~~~i~~l~fs~dg~~~~~las~ 240 (337)
..+....+.+|+.|++. .++++|
T Consensus 217 L~~~~~~~~~~~nvlNGIA~~~~~~--r~~iTG 247 (262)
T COG3823 217 LLKELNLDKSNDNVLNGIAHDPQQD--RFLITG 247 (262)
T ss_pred CchhcCccccccccccceeecCcCC--eEEEec
Confidence 11122467889988874 155554
No 386
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.10 E-value=4.4 Score=41.06 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=81.0
Q ss_pred CCceEEEEECCCCCEEEEEEcCCcee----------------E-EEEcCCeEEEEE-----------CCeEEEEECCCCe
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSIL----------------A-VRLNKKRLVIVL-----------REKTYIYDANTLA 124 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v~----------------~-i~~~~~~~~v~~-----------d~~i~i~d~~~~~ 124 (337)
.|+.|.-.|.++|+....+..+..|. + -.+..+.+++.. ++.|+-+|.++++
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 48899999999999886654332220 0 112345555542 4679999999999
Q ss_pred eeeeecCCC-C------Cc--------eE-EEEeeCCCccEEEEcC----------------CCCccEEEEEEccCCccc
Q 019672 125 ILDTIDTVP-N------LK--------GL-CAFSPSLNACFLAVPA----------------STTKGSVLVYNVMELHSH 172 (337)
Q Consensus 125 ~~~~~~~~~-~------~~--------~~-~~~~~~~~~~~la~~~----------------~~~dg~v~i~d~~~~~~~ 172 (337)
++..+.... . .. .. ...+.+++..++..+. ....+.|.-.|+.+++..
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 987775320 0 00 00 1122233322322211 002456667788887754
Q ss_pred c-------c-------CceEEEEeCC-CCC---EEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 173 C-------E-------APLAAIVLSS-NGM---YIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 173 ~-------~-------~~i~~~~~s~-dg~---~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
- . .+..-+.+.. +|+ .++.++.+|. +.+.|-++|+.+...
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV 485 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence 1 1 1222233433 664 7889999997 589999999987653
No 387
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.04 E-value=0.0042 Score=58.74 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcC-CCCEEEEEcCCc-----eEEEeCCCC--cE----EEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCC
Q 019672 6 SSYPVFFVSFNQ-DNSGFALSTKDG-----FKIFDSSTG--RL----CYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSL 72 (337)
Q Consensus 6 ~~~~v~~~~fs~-dg~~la~g~~~g-----~~vw~~~~~--~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 72 (337)
...+-++++|++ |.+.||+|-++. +.|||+.++ .. .+.. ...+...+++. ....+++.|.
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm------ 173 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGM------ 173 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhccc------
Confidence 345688999997 567789886542 589998776 11 1111 12233344444 2233333333
Q ss_pred CCceEEEEECCCCCEEEEEEcCC-ceeEEEEc---CCeEEEEECCeEEEEE-CCCC-eeeeeecCCCC--CceEEEEeeC
Q 019672 73 SPRRLCLFNTTTGTALRELNFLT-SILAVRLN---KKRLVIVLREKTYIYD-ANTL-AILDTIDTVPN--LKGLCAFSPS 144 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~---~~~~~v~~d~~i~i~d-~~~~-~~~~~~~~~~~--~~~~~~~~~~ 144 (337)
..+.+.+.|++...... ..+.. .+.++.++ +++++...|+.|.+|| .++- .++..+...++ +..+.+++..
T Consensus 174 ~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred ccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 46789999987432111 11222 34555554 4555555599999999 3332 33334432233 3345555554
Q ss_pred CCc-cEEEEcCCCCccEEEEEEccC
Q 019672 145 LNA-CFLAVPASTTKGSVLVYNVME 168 (337)
Q Consensus 145 ~~~-~~la~~~~~~dg~v~i~d~~~ 168 (337)
|.. .++++... ..++|+.+|+..
T Consensus 253 Ptrtglla~l~R-dS~tIrlydi~~ 276 (783)
T KOG1008|consen 253 PTRTGLLAVLSR-DSITIRLYDICV 276 (783)
T ss_pred cCCcchhhhhcc-CcceEEEecccc
Confidence 432 24555554 589999999863
No 388
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.99 E-value=1.5 Score=43.38 Aligned_cols=145 Identities=22% Similarity=0.244 Sum_probs=83.0
Q ss_pred CCeEEEEECCeEEEEECCCCeee------eeecC--------------CCCCceEEEE--eeCCCccEEEEcCCCCccEE
Q 019672 104 KKRLVIVLREKTYIYDANTLAIL------DTIDT--------------VPNLKGLCAF--SPSLNACFLAVPASTTKGSV 161 (337)
Q Consensus 104 ~~~~~v~~d~~i~i~d~~~~~~~------~~~~~--------------~~~~~~~~~~--~~~~~~~~la~~~~~~dg~v 161 (337)
.+.+++|..+.|+||++.....+ ..+.+ .+.+..+.-+ ..-+....|+.+. .||.|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~--DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT--DDGDV 126 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe--cCCeE
Confidence 67778888889999987543221 11111 0112222211 1112334555554 59999
Q ss_pred EEEEccCCc-----------c-------cc------cCceEEEEeC--CCCCEEEEEeCCCcEEEEEEcCCC-ceeEeec
Q 019672 162 LVYNVMELH-----------S-------HC------EAPLAAIVLS--SNGMYIATASEQGTIIRVFLVSEA-TKSYSFR 214 (337)
Q Consensus 162 ~i~d~~~~~-----------~-------~~------~~~i~~~~~s--~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~ 214 (337)
.+|.+.+.. . .. ....+.++++ ...++||.+++... |-||=.... +....-.
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCce-EEEEEEecccccccccc
Confidence 999763210 0 00 1678899998 77778888777654 567654331 1111111
Q ss_pred cCCcceeEEEEEeecCCCccc---EEEEEeCCCcEEEEec
Q 019672 215 RGTYPSTIFSLSFGQSMQFQD---ILVATSSSGSLHVFSP 251 (337)
Q Consensus 215 ~~~~~~~i~~l~fs~dg~~~~---~las~s~dg~v~iw~l 251 (337)
...+...|.+|+|-++...++ ++++++-.|.+-+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 112234588999987663222 7889999999988887
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.13 Score=51.92 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=49.0
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 185 NGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 185 dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.+..+|.|++.|.+ -..|+... +..+..+ ....+|.+++|+.||+ +++.|-.+|-|.+||+..++.
T Consensus 98 ~~~~ivi~Ts~ghv-l~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~---~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHV-LLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS---LLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeEEEEcCchhh-hhhhhhcc--cchhhcCCccCCcceeeEecCCCc---eeccccCCCcEEEEEccCCcc
Confidence 45688999988875 47777543 1112222 2245799999999999 999999999999999987654
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.70 E-value=3 Score=37.26 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=60.8
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccC--Cccc-------c---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVME--LHSH-------C---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 207 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~--~~~~-------~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~ 207 (337)
.++++||+..+.++.. ..+.|.-|++.. +... . .+..-.++.+.+|.+-+++-..|..|.+|+-. |
T Consensus 167 Gla~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 167 GLAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred ceEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 5566777777777664 457888887752 2111 0 14455677778888776555554336789887 8
Q ss_pred ceeEeeccCCcceeEEEEEee-cCCCcccEEEEEeCC
Q 019672 208 TKSYSFRRGTYPSTIFSLSFG-QSMQFQDILVATSSS 243 (337)
Q Consensus 208 ~~~~~~~~~~~~~~i~~l~fs-~dg~~~~~las~s~d 243 (337)
+++.+++... ..+.+++|- |+.+ .|...+..
T Consensus 245 ~l~~~i~lP~--~~~t~~~FgG~~~~---~L~iTs~~ 276 (307)
T COG3386 245 KLLGEIKLPV--KRPTNPAFGGPDLN---TLYITSAR 276 (307)
T ss_pred cEEEEEECCC--CCCccceEeCCCcC---EEEEEecC
Confidence 8888775432 346778886 5555 55555544
No 391
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.69 Score=38.31 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred eEEEeCCCCcEEEEEeeCC-EEEE-EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeE
Q 019672 30 FKIFDSSTGRLCYERAVGA-FSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL 107 (337)
Q Consensus 30 ~~vw~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~ 107 (337)
+++||+.+++.++.....+ -..- .+.-..+.+...+- .++.-..+|..+-+++.++.+++.=.++.-+.+.+
T Consensus 70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw------~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~L 143 (262)
T COG3823 70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW------KEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNL 143 (262)
T ss_pred eEEEeccCceEEEEeecCCccccccceeeccceEEEEEe------ccceeEEEChHHhhhhcccccCCcceeeecCCcce
Confidence 5899999999887754431 1100 11122333333333 47888899999999999998888878877766665
Q ss_pred EEEECC--eEEEEECCCCeee
Q 019672 108 VIVLRE--KTYIYDANTLAIL 126 (337)
Q Consensus 108 ~v~~d~--~i~i~d~~~~~~~ 126 (337)
+.. || .++.-|-++...+
T Consensus 144 ims-dGsatL~frdP~tfa~~ 163 (262)
T COG3823 144 IMS-DGSATLQFRDPKTFAEL 163 (262)
T ss_pred Eee-CCceEEEecCHHHhhhc
Confidence 443 44 4555555544333
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.14 E-value=4 Score=36.36 Aligned_cols=221 Identities=16% Similarity=0.215 Sum_probs=94.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCceEEEe-CCCCcE---EEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFD-SSTGRL---CYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (337)
Q Consensus 5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~-~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~ 78 (337)
+-+.++..+.|..+..-+++|.... |+. .+.|+- ....... ......+.+..+...+++. .+ +.
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-------~g-~l 83 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-------PG-LL 83 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE-------TT-EE
T ss_pred CCCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC-------Cc-eE
Confidence 4466899999997777788887653 333 333332 2111111 1222333444444444432 22 33
Q ss_pred EEECCCCCEEEEEE----cCCceeE-EEEcCCeEEEEECCeEEEEECC-CCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672 79 LFNTTTGTALRELN----FLTSILA-VRLNKKRLVIVLREKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (337)
Q Consensus 79 iwd~~~~~~~~~~~----~~~~v~~-i~~~~~~~~v~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 152 (337)
+--...|+.=..+. .+..... ..+.++...++.+. -.||-.. .++.-+.+.. .....+..+...+++.++++
T Consensus 84 l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav 161 (302)
T PF14870_consen 84 LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV 161 (302)
T ss_dssp EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE
T ss_pred EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE
Confidence 33333333222222 1222222 23344544444432 1233222 2322222221 12234556677889999988
Q ss_pred cCCCCccEE-EEEEccCC-cccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEE-cCCCceeEe--eccCCcceeEE
Q 019672 153 PASTTKGSV-LVYNVMEL-HSHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFL-VSEATKSYS--FRRGTYPSTIF 223 (337)
Q Consensus 153 ~~~~~dg~v-~i~d~~~~-~~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd-~~~~~~~~~--~~~~~~~~~i~ 223 (337)
+. .|.+ .-||--.. =..| ...|.++.|+|++.+.+.+ ..|. |+.=+ ...++...+ .......-.+.
T Consensus 162 s~---~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~l 236 (302)
T PF14870_consen 162 SS---RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGIL 236 (302)
T ss_dssp ET---TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EE
T ss_pred EC---cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeE
Confidence 76 3544 46775422 1122 2789999999998876654 6664 55544 122222111 11101112389
Q ss_pred EEEeecCCCcccEEEEEeCCCcE
Q 019672 224 SLSFGQSMQFQDILVATSSSGSL 246 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v 246 (337)
.++|.+++. ..|+|+. |++
T Consensus 237 d~a~~~~~~---~wa~gg~-G~l 255 (302)
T PF14870_consen 237 DLAYRPPNE---IWAVGGS-GTL 255 (302)
T ss_dssp EEEESSSS----EEEEEST-T-E
T ss_pred EEEecCCCC---EEEEeCC-ccE
Confidence 999999987 6665554 544
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.13 E-value=0.89 Score=42.45 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=68.4
Q ss_pred EEeeCCCccEEEEc----CCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCC----------cEEEE
Q 019672 140 AFSPSLNACFLAVP----ASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQG----------TIIRV 201 (337)
Q Consensus 140 ~~~~~~~~~~la~~----~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg----------~~i~v 201 (337)
.++++|++.++|++ |+ +...++++|+.+++.+.. ..-..++|.+||+.|+....+. ..|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~-e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGS-EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTS-SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCC-ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 56777888888855 33 456799999999876643 1122399999999877665332 23567
Q ss_pred EEcCCCcee--EeeccCCccee-EEEEEeecCCCcccEEEEEeCCC----cEEEEecCCC
Q 019672 202 FLVSEATKS--YSFRRGTYPST-IFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFA 254 (337)
Q Consensus 202 wd~~~~~~~--~~~~~~~~~~~-i~~l~fs~dg~~~~~las~s~dg----~v~iw~l~~~ 254 (337)
|.+.++..- ..+.. ..... ...+..|+|++ +|+..+..+ .+++.++...
T Consensus 207 ~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~---~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGR---YLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSS---EEEEEEESSSSEEEEEEEECCCT
T ss_pred EECCCChHhCeeEEee-cCCCcEEEEEEecCccc---EEEEEEEccccCCeEEEEecccc
Confidence 777666432 22222 22222 56789999999 766544332 3777777654
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.76 E-value=0.073 Score=44.40 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=45.7
Q ss_pred CCceEEEEECCCCCEEEEE-EcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeee-eecCCCCCceEEEEeeCCCccE
Q 019672 73 SPRRLCLFNTTTGTALREL-NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCAFSPSLNACF 149 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (337)
+|+.|+-++++..+.-..- .+...-..+.-....+++.+ ++.|++|+........ .+....+ ...+.+ +..+...
T Consensus 38 a~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-~i~~~I-p~~~~~~ 115 (238)
T KOG2444|consen 38 ADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-SIDLGI-PNGRDSS 115 (238)
T ss_pred CCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc-cceecc-ccccccc
Confidence 4677777766543322211 11111111111233455544 8999999876322211 1111111 122333 3333323
Q ss_pred EEEcCCCCccEEEEEEccCCccc
Q 019672 150 LAVPASTTKGSVLVYNVMELHSH 172 (337)
Q Consensus 150 la~~~~~~dg~v~i~d~~~~~~~ 172 (337)
+++.+. ++|.|+.|+++-.+.+
T Consensus 116 ~~c~~~-~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 116 LGCVGA-QDGRIRACNIKPNKVL 137 (238)
T ss_pred eeEEec-cCCceeeeccccCcee
Confidence 444443 6999999998866543
No 395
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.71 E-value=4.7 Score=35.69 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=81.5
Q ss_pred CceEEEEECCCCCEEEEEEcCC-------ceeEEEEcC--C----eE-EEEE--CCeEEEEECCCCeeeeeecCCC--CC
Q 019672 74 PRRLCLFNTTTGTALRELNFLT-------SILAVRLNK--K----RL-VIVL--REKTYIYDANTLAILDTIDTVP--NL 135 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~~-------~v~~i~~~~--~----~~-~v~~--d~~i~i~d~~~~~~~~~~~~~~--~~ 135 (337)
.-+|.+||+++++.++++.++. ...++.++. . .. +++- ...|.|||+.+++..+...... .+
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 4589999999999999988764 345566644 1 33 3333 4589999999987654442211 11
Q ss_pred ---------------ceEEEEee---CCCccEEEEcCCCCccEEEEEEccCCcc--------c------c----c-CceE
Q 019672 136 ---------------KGLCAFSP---SLNACFLAVPASTTKGSVLVYNVMELHS--------H------C----E-APLA 178 (337)
Q Consensus 136 ---------------~~~~~~~~---~~~~~~la~~~~~~dg~v~i~d~~~~~~--------~------~----~-~~i~ 178 (337)
.++..++. ++++..|.+..- ..-++|.+.+.-. . + + ....
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l---ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~ 189 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL---SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD 189 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET---T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeC---CCCcEEEEEHHHhhCccccccccccccceeccccCCCCc
Confidence 11222222 224444444321 1123333321100 0 0 0 3567
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEEcCCCc---eeEeeccCCc-ceeEEEEEeec--CCC
Q 019672 179 AIVLSSNGMYIATASEQGTIIRVFLVSEAT---KSYSFRRGTY-PSTIFSLSFGQ--SMQ 232 (337)
Q Consensus 179 ~~~~s~dg~~lat~s~dg~~i~vwd~~~~~---~~~~~~~~~~-~~~i~~l~fs~--dg~ 232 (337)
.++++++|.+..+--+... |..|+..+.- .+..+..... -.-+.++++.+ +|.
T Consensus 190 g~~~D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp EEEEETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred eEEECCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence 8899999998888888876 5789987622 1122221111 12267788888 776
No 396
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.61 E-value=5.9 Score=39.37 Aligned_cols=119 Identities=9% Similarity=0.178 Sum_probs=69.2
Q ss_pred CceEEEEeCC--CCCEEEEEeCCCcEEEEEEcCCC-----------c---------eeEeeccCCcceeEEEEEee--cC
Q 019672 175 APLAAIVLSS--NGMYIATASEQGTIIRVFLVSEA-----------T---------KSYSFRRGTYPSTIFSLSFG--QS 230 (337)
Q Consensus 175 ~~i~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~-----------~---------~~~~~~~~~~~~~i~~l~fs--~d 230 (337)
..|+.+.... +...|+.+.+||.+ -+|.+++- + +...++ -.+..++|+++ ..
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V-~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDV-LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKK 176 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeE-EEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCc
Confidence 4466666654 34578889999985 69976210 0 011111 12358899998 77
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCccc---CEEEEEEeCC
Q 019672 231 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR---ASVSVITYNG 307 (337)
Q Consensus 231 g~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~l~~~~~dg 307 (337)
.+ +||++++...|.||-.....+......+.. ....+|. +.+++...+. ..|++.+-.|
T Consensus 177 ~r---lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~-~~hNIP~--------------VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 177 SR---LIAVSSNSQEVTVFAFALVDERFYHVPSHQ-HSHNIPN--------------VSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred ce---EEEEecCCceEEEEEEeccccccccccccc-cccCCCe--------------eEeecCCCCCccceEEEEEeccC
Confidence 77 999999999999987765422111010000 1122221 1122222222 2788899999
Q ss_pred cEEEEEEe
Q 019672 308 YFVEYIFS 315 (337)
Q Consensus 308 ~~~~~~~~ 315 (337)
.+.+|.+.
T Consensus 239 ~v~~~~I~ 246 (717)
T PF08728_consen 239 EVWTFKIK 246 (717)
T ss_pred cEEEEEEE
Confidence 99999984
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=4.7 Score=35.23 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
..|-+|+.+.+..+++..|-.|+..-+||..+|..+..-.. .....|+ +... =+++.|.+|.+.++.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva--~~~~---gf~vssg~G~~~~~s 346 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVA--AAKG---GFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccce--eccC---ceEEecCCceEEecc
Confidence 77899999988888888888888777999999987654321 1122233 3333 477778889998874
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.48 E-value=3.5 Score=39.55 Aligned_cols=139 Identities=12% Similarity=0.140 Sum_probs=78.7
Q ss_pred CceeEEEEcCCeEEEEE-----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC----c-cEEEEcCCCCccEEEEE
Q 019672 95 TSILAVRLNKKRLVIVL-----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN----A-CFLAVPASTTKGSVLVY 164 (337)
Q Consensus 95 ~~v~~i~~~~~~~~v~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~la~~~~~~dg~v~i~ 164 (337)
+++.+++|.....++.+ .+.+++=| .+.+.+|+ -++++++.|. . .+||+.- ...|.||
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE------hV~GlsW~P~~~~~~paLLAVQH---kkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE------HVHGLSWAPPCTADTPALLAVQH---KKHVTVW 87 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc------eeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence 47788888654444433 34443322 23344443 2445555443 2 4677654 6889999
Q ss_pred EccCC-----ccc--cc------Cc--eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-ee-EeeccCCcceeEEEEEe
Q 019672 165 NVMEL-----HSH--CE------AP--LAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KS-YSFRRGTYPSTIFSLSF 227 (337)
Q Consensus 165 d~~~~-----~~~--~~------~~--i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-~~-~~~~~~~~~~~i~~l~f 227 (337)
.+.-. +.. ++ -| -..+.|+|....|+.=..+...| ++++.... .+ ..++ ..+.|+|.+|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~---~~G~IhCACW 163 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK---TSGLIHCACW 163 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc---CCceEEEEEe
Confidence 88622 111 11 22 24678999988777655544333 66665332 22 2221 2456999999
Q ss_pred ecCCCcccEEEEEeCCC-cEEEEecC
Q 019672 228 GQSMQFQDILVATSSSG-SLHVFSPG 252 (337)
Q Consensus 228 s~dg~~~~~las~s~dg-~v~iw~l~ 252 (337)
.+||+ .|+++-... --+|||-.
T Consensus 164 T~DG~---RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 164 TKDGQ---RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCcCC---EEEEEeCCeEEEEEecCc
Confidence 99999 877775542 24678743
No 399
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.45 E-value=5.4 Score=35.59 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=45.8
Q ss_pred EcCCCCEEEEEcCCceEEEeCCC--CcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 15 FNQDNSGFALSTKDGFKIFDSST--GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 15 fs~dg~~la~g~~~g~~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
+..++++|+.|++.|+.+.+... .+...-.....+..+++...-+.++++++ ..+.|+.+++.
T Consensus 9 ~~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsg------k~~~L~~~~L~ 73 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISG------KKPQLYSHPLS 73 (302)
T ss_pred cccCCcEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeC------CcceEEEEEHH
Confidence 34455789999999997777654 34444445567778888888888888886 24569999973
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.37 E-value=6.9 Score=36.57 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=72.7
Q ss_pred CCceEEEEECCCCC-----EEEEEEcCCceeEEEEcC-------CeEEEEECCeEEEEECCC--Ce-------eeeeecC
Q 019672 73 SPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNK-------KRLVIVLREKTYIYDANT--LA-------ILDTIDT 131 (337)
Q Consensus 73 ~d~~v~iwd~~~~~-----~~~~~~~~~~v~~i~~~~-------~~~~v~~d~~i~i~d~~~--~~-------~~~~~~~ 131 (337)
-.|.++|++...+. .+.+.....||..+...+ ..++|....++.||.+.. +. .+..+..
T Consensus 45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye 124 (418)
T PF14727_consen 45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE 124 (418)
T ss_pred cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence 47999999986543 556777888999987632 345555588999998821 11 1111111
Q ss_pred C---CCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672 132 V---PNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVF 202 (337)
Q Consensus 132 ~---~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vw 202 (337)
| ......+.-.+.+. ..++++-+ -||.+.+|+-......+. --...++|.|.-..|++++.+.. +.-|
T Consensus 125 h~l~~~a~nm~~G~Fgg~~~~~~IcVQS--~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~-l~~Y 201 (418)
T PF14727_consen 125 HSLQRTAYNMCCGPFGGVKGRDFICVQS--MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT-LECY 201 (418)
T ss_pred EecccceeEEEEEECCCCCCceEEEEEe--cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee-EEEe
Confidence 1 11112222222221 34666666 599999998765432111 11233456666667888877654 3444
Q ss_pred E
Q 019672 203 L 203 (337)
Q Consensus 203 d 203 (337)
.
T Consensus 202 k 202 (418)
T PF14727_consen 202 K 202 (418)
T ss_pred c
Confidence 4
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.99 E-value=0.42 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=23.7
Q ss_pred CceEEEEeCCCCC---EEEEEeCCCcEEEEEEcCC
Q 019672 175 APLAAIVLSSNGM---YIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 175 ~~i~~~~~s~dg~---~lat~s~dg~~i~vwd~~~ 206 (337)
+.|.++.|||+.. +||-+-..|. +.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 4689999998544 7776665665 79999985
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.87 E-value=8.1 Score=36.00 Aligned_cols=188 Identities=13% Similarity=0.095 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCc--eEEEeCCCC--cE--EEEEee------CCEE---EEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672 18 DNSGFALSTKDG--FKIFDSSTG--RL--CYERAV------GAFS---IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (337)
Q Consensus 18 dg~~la~g~~~g--~~vw~~~~~--~~--~~~~~~------~~~~---~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~ 82 (337)
+.++|++.+-.+ +.|+|+.+. +. ....+. .+.. .+-+.++++.++..-|+... ...+.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence 456777776443 677787643 22 212211 1111 12344555555544333222 34678999998
Q ss_pred CCCCEEEEEEcCC----ceeEEEEcCCeEEE-EE----------------------CCeEEEEECCCCeeeeeecCCCCC
Q 019672 83 TTGTALRELNFLT----SILAVRLNKKRLVI-VL----------------------REKTYIYDANTLAILDTIDTVPNL 135 (337)
Q Consensus 83 ~~~~~~~~~~~~~----~v~~i~~~~~~~~v-~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~ 135 (337)
++.+.+...+... --.++.+.+.+.+. .+ .+++.+||+.+.+.++++....+.
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8887777765432 22445555443222 11 258999999999999999876442
Q ss_pred ceEE--EEeeCCCccEEEEcCCCCccEEEEE-EccCCcccc--------------------------cCceEEEEeCCCC
Q 019672 136 KGLC--AFSPSLNACFLAVPASTTKGSVLVY-NVMELHSHC--------------------------EAPLAAIVLSSNG 186 (337)
Q Consensus 136 ~~~~--~~~~~~~~~~la~~~~~~dg~v~i~-d~~~~~~~~--------------------------~~~i~~~~~s~dg 186 (337)
...+ -+..+|+..+=+++.. -..+|..| ....++-.. ..-|+.|.+|.|.
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2222 3344555444222221 23445443 322222100 0237899999999
Q ss_pred CEEEEEe-CCCcEEEEEEcCCCc
Q 019672 187 MYIATAS-EQGTIIRVFLVSEAT 208 (337)
Q Consensus 187 ~~lat~s-~dg~~i~vwd~~~~~ 208 (337)
++|..++ .+|. ||-||+.+..
T Consensus 324 rfLYvs~W~~Gd-vrqYDISDP~ 345 (461)
T PF05694_consen 324 RFLYVSNWLHGD-VRQYDISDPF 345 (461)
T ss_dssp -EEEEEETTTTE-EEEEE-SSTT
T ss_pred CEEEEEcccCCc-EEEEecCCCC
Confidence 9888766 5676 7999997754
No 403
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=1.5 Score=41.25 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=53.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEE-EE---EE----cCCCceeEeec---c------CCcceeEEEEEeecCCCcccEE
Q 019672 175 APLAAIVLSSNGMYIATASEQGTII-RV---FL----VSEATKSYSFR---R------GTYPSTIFSLSFGQSMQFQDIL 237 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i-~v---wd----~~~~~~~~~~~---~------~~~~~~i~~l~fs~dg~~~~~l 237 (337)
-.|..+..|+.|..+|-++.+|-+| .+ |- +++|+.....+ . ....-.+..++|+|++-.-..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4578888999999999999999532 11 21 23443322111 0 0111236778999987111378
Q ss_pred EEEeCCCcEEEEecCCCcc
Q 019672 238 VATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 238 as~s~dg~v~iw~l~~~~~ 256 (337)
..-++|++|+|||+....+
T Consensus 184 ~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEecCcEEEEEecCCcch
Confidence 8899999999999987654
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.62 E-value=2.8 Score=41.08 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=58.7
Q ss_pred CeEEEEE--CCeEEEEECCCCeeeeeecC-CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc-----CCcc----c
Q 019672 105 KRLVIVL--REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-----ELHS----H 172 (337)
Q Consensus 105 ~~~~v~~--d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~-----~~~~----~ 172 (337)
++++++. ...+.|||.+.+....+-.. ..++..-..+...|+++.+.+.|. .+.|.+|--. .... +
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf--~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF--PHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc--CcEEEEEEccchhhhcCCccccee
Confidence 4444444 44899999988865443322 123333345666788888777774 6888887432 1110 0
Q ss_pred -------cc-CceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672 173 -------CE-APLAAIVLSSNGMYIATASEQGTIIRVFLV 204 (337)
Q Consensus 173 -------~~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~ 204 (337)
++ .+|....|-++|.+++.++. .+.|+|-
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---qlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGSGN---QLFVFDK 155 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEeCC---EEEEECC
Confidence 12 78999999999987665533 2567763
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.18 E-value=5.4 Score=39.16 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=49.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee--cCCCcccEEEEEeCCCcEEEEe
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs--~dg~~~~~las~s~dg~v~iw~ 250 (337)
....-+.-|.-+ .+|...++++.+.|||.+.+...++-.. .....|.++.|. |||+ .+++-+-...|.++-
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~q---siLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQ---SILAVGFPHHVLLYT 102 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCC---EEEEEEcCcEEEEEE
Confidence 344445555543 4666677788889999999886654432 124568899886 8898 777777788898885
No 406
>PHA02713 hypothetical protein; Provisional
Probab=91.94 E-value=13 Score=36.30 Aligned_cols=187 Identities=9% Similarity=0.035 Sum_probs=89.3
Q ss_pred CCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--C-----CeEEEEECCCCeeeee
Q 019672 58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDT 128 (337)
Q Consensus 58 ~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d-----~~i~i~d~~~~~~~~~ 128 (337)
.+.+.++||.......-+++..||+.+++....-..+. .-.++....+.+++.+ + .++..||..+.+=. .
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-M 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-E
Confidence 34555555421111123578889998876432211111 1122333345555544 2 25888998765321 1
Q ss_pred ecCCCCCc-eEEEEeeCCCccEEEEcCCCC---------------------ccEEEEEEccCCccc-----ccCceEEEE
Q 019672 129 IDTVPNLK-GLCAFSPSLNACFLAVPASTT---------------------KGSVLVYNVMELHSH-----CEAPLAAIV 181 (337)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~~~~la~~~~~~---------------------dg~v~i~d~~~~~~~-----~~~~i~~~~ 181 (337)
+..-+.+. ...+... ++...+.+|.+. -..+..||..+.+-. .......-+
T Consensus 382 ~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 11111111 1112222 345666666421 135778887765321 111111112
Q ss_pred eCCCCCEEEEEeCCC-----cEEEEEEcCC-Cc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC--cEEEEec
Q 019672 182 LSSNGMYIATASEQG-----TIIRVFLVSE-AT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHVFSP 251 (337)
Q Consensus 182 ~s~dg~~lat~s~dg-----~~i~vwd~~~-~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg--~v~iw~l 251 (337)
..-+|+..+.|+.++ ..+..||..+ .+ .+..+... ......+++ +|+ +.++|+.++ ++..||.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~~~--~~~---iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTILH--DNT---IMMLHCYESYMLQDTFNV 532 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeEEE--CCE---EEEEeeecceeehhhcCc
Confidence 233567777776542 2246788876 33 22223211 111222222 677 899999888 6777776
Q ss_pred CCC
Q 019672 252 GFA 254 (337)
Q Consensus 252 ~~~ 254 (337)
.+.
T Consensus 533 ~~~ 535 (557)
T PHA02713 533 YTY 535 (557)
T ss_pred ccc
Confidence 554
No 407
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.89 E-value=1 Score=38.13 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=36.2
Q ss_pred EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE---------------EcCCceeEEEEcCCeEEEEE--CCeEE
Q 019672 54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL---------------NFLTSILAVRLNKKRLVIVL--REKTY 116 (337)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~v~~--d~~i~ 116 (337)
+....+++..++. +|.+.+||+++++.+... .....|..+.++.++.-++. ++..+
T Consensus 18 l~~~~~~Ll~iT~-------~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 18 LECNGSYLLAITS-------SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred EEeCCCEEEEEeC-------CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 4445666666654 899999999998765432 11234555555554433322 55666
Q ss_pred EEECC
Q 019672 117 IYDAN 121 (337)
Q Consensus 117 i~d~~ 121 (337)
.|+..
T Consensus 91 ~y~~~ 95 (219)
T PF07569_consen 91 SYSPD 95 (219)
T ss_pred Eeccc
Confidence 66643
No 408
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.85 E-value=1.1 Score=26.27 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.2
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC
Q 019672 184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG 216 (337)
Q Consensus 184 ~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~ 216 (337)
|+|++|.++......|.++|..+++.+.++.-+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 678877777654444689999998888777654
No 409
>PRK10115 protease 2; Provisional
Probab=91.77 E-value=16 Score=36.81 Aligned_cols=237 Identities=12% Similarity=0.059 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCEEEEEcCC-c-----eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672 10 VFFVSFNQDNSGFALSTKD-G-----FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~-g-----~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~ 83 (337)
+..+.++|||++|+.+.+. | +++.|+.+++.+...-...-..+.+..+++.+.+...... ......|..+++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~-~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPV-TLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCC-CCCCCEEEEEECC
Confidence 7778999999999887653 3 4677888886432221111123566667777777654211 0134689999998
Q ss_pred CCC--EEEEEEc-CCcee-EEEE--cCCeEEEEE----CCeEEEEECC--CCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672 84 TGT--ALRELNF-LTSIL-AVRL--NKKRLVIVL----REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (337)
Q Consensus 84 ~~~--~~~~~~~-~~~v~-~i~~--~~~~~~v~~----d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 151 (337)
++. -..-+.. ..... .+.. +...+++.. ++.+.+++.. +++....+....+ ..+.+....+..++.
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD--HEYSLDHYQHRFYLR 285 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC--CEEEEEeCCCEEEEE
Confidence 882 2222222 12221 2222 334444433 4578888842 3332212221111 222222223333333
Q ss_pred EcCCCCccEEEEEEccC-C--ccc--c-c-CceEEEEeCCCCCEEEEEeCCCcE-EEEEEcCCCceeEeeccCCcceeEE
Q 019672 152 VPASTTKGSVLVYNVME-L--HSH--C-E-APLAAIVLSSNGMYIATASEQGTI-IRVFLVSEATKSYSFRRGTYPSTIF 223 (337)
Q Consensus 152 ~~~~~~dg~v~i~d~~~-~--~~~--~-~-~~i~~~~~s~dg~~lat~s~dg~~-i~vwd~~~~~~~~~~~~~~~~~~i~ 223 (337)
+........|...++.. . +.+ + . ..|..+.+..+ .++++...+|.. ++++|..+ ..+..+... ....+.
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~-~~~~~~ 362 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKT-REVIGIAFD-DPAYVT 362 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCC-CceEEecCC-CCceEe
Confidence 33211233444445542 1 111 1 1 35777887733 556666666642 23345433 334444311 111233
Q ss_pred EEEee--cCCCcccEEEEEeCC---CcEEEEecCCC
Q 019672 224 SLSFG--QSMQFQDILVATSSS---GSLHVFSPGFA 254 (337)
Q Consensus 224 ~l~fs--~dg~~~~~las~s~d---g~v~iw~l~~~ 254 (337)
.+.++ +++. .++++.+.- +.+..+|+.+.
T Consensus 363 ~~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 363 WIAYNPEPETS--RLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred eecccCCCCCc--eEEEEEecCCCCCEEEEEECCCC
Confidence 33444 4433 144444433 45777777654
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.71 E-value=1.4 Score=37.21 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=43.3
Q ss_pred eCCCCCEEEEEeCCCcEEEEEEcCCCceeEee------ccC------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672 182 LSSNGMYIATASEQGTIIRVFLVSEATKSYSF------RRG------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF 249 (337)
Q Consensus 182 ~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~------~~~------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw 249 (337)
+..++++|.+-+.+|. +++||+.+++.+..- -.. .....|.++.++.+|. -+++-+ +|..+.|
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~---PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV---PIVTLS-NGDSYSY 92 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC---EEEEEe-CCCEEEe
Confidence 3456778888888887 588998887754321 000 1223478888888887 555554 4778888
Q ss_pred ecC
Q 019672 250 SPG 252 (337)
Q Consensus 250 ~l~ 252 (337)
+.+
T Consensus 93 ~~~ 95 (219)
T PF07569_consen 93 SPD 95 (219)
T ss_pred ccc
Confidence 754
No 411
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.51 E-value=5.2 Score=30.77 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=39.2
Q ss_pred CceEEEEECC--------CCCEEEEEEcCCceeEEEE-------cCCeEEEEECCeEEEEECCCCeeeee
Q 019672 74 PRRLCLFNTT--------TGTALRELNFLTSILAVRL-------NKKRLVIVLREKTYIYDANTLAILDT 128 (337)
Q Consensus 74 d~~v~iwd~~--------~~~~~~~~~~~~~v~~i~~-------~~~~~~v~~d~~i~i~d~~~~~~~~~ 128 (337)
-++|.|.+.. ....+..+.+..+|++++- ..+-+++++..++..||+....-+..
T Consensus 19 ~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 19 GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY 88 (136)
T ss_pred CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence 4678888765 3345677788888888753 24667888899999999976654433
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.12 E-value=5.7 Score=34.82 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=60.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
..+.++.|+|+.+.|.+..+....| ||=..+|+.+.++..... +.--.+.+.-+|+ +.++--.++.+.++.++.+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~i-VElt~~GdlirtiPL~g~-~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAI-VELTKEGDLIRTIPLTGF-SDPETIEYIGGNQ---FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceE-EEEecCCceEEEeccccc-CChhHeEEecCCE---EEEEehhcceEEEEEEcCC
Confidence 5599999999999888888877765 888889999988754321 2234678888898 8888888899999998876
Q ss_pred ccc
Q 019672 255 INQ 257 (337)
Q Consensus 255 ~~~ 257 (337)
...
T Consensus 161 t~~ 163 (316)
T COG3204 161 TTV 163 (316)
T ss_pred ccE
Confidence 543
No 413
>PHA03098 kelch-like protein; Provisional
Probab=91.07 E-value=16 Score=35.47 Aligned_cols=186 Identities=8% Similarity=0.029 Sum_probs=84.9
Q ss_pred CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--C-----CeEEEEECCCCeeeeee
Q 019672 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTI 129 (337)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d-----~~i~i~d~~~~~~~~~~ 129 (337)
+.+.++||........+.+..||..+++....-..+. .-.++....+.+++.+ + +.+..||..+.+-. ..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EE 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eC
Confidence 4455555432111123468889988876543221111 1122223345555544 2 35778888765321 11
Q ss_pred cCCCCCceEEEEeeCCCccEEEEcCCCCc----cEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCC----
Q 019672 130 DTVPNLKGLCAFSPSLNACFLAVPASTTK----GSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQG---- 196 (337)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~la~~~~~~d----g~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg---- 196 (337)
...+.+..-.+.... ++.+.+.+|...+ ..+..||..+.+-... ..-...+...+++..+.|+.++
T Consensus 374 ~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 374 PPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC
Confidence 111111111122222 3456666663111 4688899876532111 0001112223566667776432
Q ss_pred ---cEEEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCC
Q 019672 197 ---TIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGF 253 (337)
Q Consensus 197 ---~~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~ 253 (337)
..+.+||..+++-. ..+... ......+. -+++ +++.|+.+ +.|.+||..+
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~--~~~~---iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFP--RINASLCI--FNNK---IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred cccceEEEecCCCCceeeCCCCCcc--cccceEEE--ECCE---EEEEcCCcCCcccceeEEEeCCC
Confidence 12468888776532 111111 11111122 2666 77777654 4678887654
No 414
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.03 E-value=11 Score=33.45 Aligned_cols=135 Identities=13% Similarity=0.186 Sum_probs=77.6
Q ss_pred eEEEEECCCCeeeeeecCCCC----CceEEEEeeCC--Cc---cEEEEcCCCCccEEEEEEccCCccc---cc-------
Q 019672 114 KTYIYDANTLAILDTIDTVPN----LKGLCAFSPSL--NA---CFLAVPASTTKGSVLVYNVMELHSH---CE------- 174 (337)
Q Consensus 114 ~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~---~~la~~~~~~dg~v~i~d~~~~~~~---~~------- 174 (337)
+|.+||+.+.++++++..+.. ...+..+..+. .. .+...+.. ..+-|.|+|+.+++.- +.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~-~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS-GGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-TTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-CcCcEEEEEccCCcEEEEecCCcceecc
Confidence 678889999988888755432 22344444333 11 23333333 3567999999876531 10
Q ss_pred --------------CceEEEEeCC---CCCEEEEEeCCCcEEEEEEcCCC-----ce---------eEeeccCCcceeEE
Q 019672 175 --------------APLAAIVLSS---NGMYIATASEQGTIIRVFLVSEA-----TK---------SYSFRRGTYPSTIF 223 (337)
Q Consensus 175 --------------~~i~~~~~s~---dg~~lat~s~dg~~i~vwd~~~~-----~~---------~~~~~~~~~~~~i~ 223 (337)
..+..++.+| +|++|.-..-.|. ++|-+.+. .. +..+ +.....-.
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~ 189 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSD 189 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SEC
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceec--cccCCCCc
Confidence 4467777766 7777777776654 35554321 11 1111 11112345
Q ss_pred EEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
.++++++|. ++.+--..+.|..|+..++..
T Consensus 190 g~~~D~~G~---ly~~~~~~~aI~~w~~~~~~~ 219 (287)
T PF03022_consen 190 GMAIDPNGN---LYFTDVEQNAIGCWDPDGPYT 219 (287)
T ss_dssp EEEEETTTE---EEEEECCCTEEEEEETTTSB-
T ss_pred eEEECCCCc---EEEecCCCCeEEEEeCCCCcC
Confidence 688999998 888999999999999876543
No 415
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=18 Score=38.23 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=81.0
Q ss_pred CeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEE-eeCCC-----c-cEEEEcCCCCccEEEEEEccC----Ccc--
Q 019672 105 KRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAF-SPSLN-----A-CFLAVPASTTKGSVLVYNVME----LHS-- 171 (337)
Q Consensus 105 ~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~-~~la~~~~~~dg~v~i~d~~~----~~~-- 171 (337)
++..+..|+.+.+|+..++.....+.+..+..--+.+ .|.|. = .+|+.+ +--.|.|+-+.- ...
T Consensus 91 ~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred cceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccceEEEEEEEeccccCcccc
Confidence 3455556999999999887666666554443222222 22221 1 122222 234466654321 111
Q ss_pred ------c--ccCceEEEEeCCCCCEEEEEeCCCcEEE-EEEcCCC---c---ee--------------EeeccCCcceeE
Q 019672 172 ------H--CEAPLAAIVLSSNGMYIATASEQGTIIR-VFLVSEA---T---KS--------------YSFRRGTYPSTI 222 (337)
Q Consensus 172 ------~--~~~~i~~~~~s~dg~~lat~s~dg~~i~-vwd~~~~---~---~~--------------~~~~~~~~~~~i 222 (337)
+ ....|+|+....+|+.+.+| .||.+.. +|...+| + ++ ..+. +.+..+|
T Consensus 168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI 245 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPI 245 (1311)
T ss_pred cccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcc
Confidence 0 11568999988899876655 5554322 2232222 1 10 1111 2345578
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
..++.....+ .|-+-+..|+|.+|++...
T Consensus 246 ~qi~ID~SR~---IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 246 RQITIDNSRN---ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeEeccccc---eeeeeccCceEEEEEccCC
Confidence 8999987777 9999999999999999874
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=6.7 Score=40.65 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=52.9
Q ss_pred CccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC--cceeEEEEEeec
Q 019672 157 TKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT--YPSTIFSLSFGQ 229 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~~l~fs~ 229 (337)
.|+.|++.-+.-.....+ ...+|++|+|.|+.++.|-..|+++ =|- .+++...++.+.. ....|.+|+|-.
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~v-Qy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEV-QYE-PSLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEE-Eee-cccceeecccCCCcCCCcceeEEEEec
Confidence 478888877654433322 6789999999999999999999854 332 2333333332211 124599999987
Q ss_pred CCCcccEEEEEeC
Q 019672 230 SMQFQDILVATSS 242 (337)
Q Consensus 230 dg~~~~~las~s~ 242 (337)
.-. ||++-+.
T Consensus 254 t~e---flvvy~n 263 (1405)
T KOG3630|consen 254 TQE---FLVVYGN 263 (1405)
T ss_pred cee---EEEEecc
Confidence 766 7776543
No 417
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=15 Score=32.33 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=89.7
Q ss_pred EEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672 87 ALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (337)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d 165 (337)
.+..+....-+.++.+++++..++- +.-++|.|+.+...-..+....-.....++..+++ +...+. .+.-..+.|
T Consensus 79 l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn--~aYVad--lddgfLivd 154 (370)
T COG5276 79 LLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN--YAYVAD--LDDGFLIVD 154 (370)
T ss_pred eEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC--EEEEee--ccCcEEEEE
Confidence 4455666777889999999999988 66899999987643333211111123345555554 433333 234477788
Q ss_pred ccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce-eEEEEEeecCCCcccE
Q 019672 166 VMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-TIFSLSFGQSMQFQDI 236 (337)
Q Consensus 166 ~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~-~i~~l~fs~dg~~~~~ 236 (337)
+.+.....- ..-..++.| |++...+..|+.+ .|-|+.+.....-+. .-... .++++..|++-- +
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL-~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~---y 227 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL-TIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRA---Y 227 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe-EEEEccCCCCCeEEE-EEecCCceEEEEecCCee---E
Confidence 876553221 233456665 4566666677774 789987654322111 11112 478888887765 5
Q ss_pred EEEEeCCCcEEEEecCCCc
Q 019672 237 LVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 237 las~s~dg~v~iw~l~~~~ 255 (337)
++.... -+-+-|...++
T Consensus 228 ~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 228 LVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred EEEccc--ceEEEecCCCC
Confidence 554432 35556655544
No 418
>PHA02713 hypothetical protein; Provisional
Probab=88.83 E-value=25 Score=34.43 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=57.0
Q ss_pred ceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEEC--------CeEEEEECCCCeeeeeecCCCCCceEEEEeeC
Q 019672 75 RRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (337)
..+..||..+++...--..+.+. .++..-.+.+++++. +.+..||..+..- ..+..-+.+..-.+...-
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEE
Confidence 46788998887644322222211 233444566666541 2477888876532 122111111111222221
Q ss_pred CCccEEEEcCCCC---ccEEEEEEccCCcccc-----c--CceEEEEeCCCCCEEEEEeCC
Q 019672 145 LNACFLAVPASTT---KGSVLVYNVMELHSHC-----E--APLAAIVLSSNGMYIATASEQ 195 (337)
Q Consensus 145 ~~~~~la~~~~~~---dg~v~i~d~~~~~~~~-----~--~~i~~~~~s~dg~~lat~s~d 195 (337)
++.+.+.+|.+. -..+..||..+.+-.. . .....+++ +|+..+.|+.+
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~ 408 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRT 408 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence 345667777421 1358889987643211 1 11222333 67888888765
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.46 E-value=14 Score=31.01 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=79.0
Q ss_pred eEEEEcC-CeEEEEE-CCeEEEEECC--CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC-cc---EEEEE---Ec
Q 019672 98 LAVRLNK-KRLVIVL-REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT-KG---SVLVY---NV 166 (337)
Q Consensus 98 ~~i~~~~-~~~~v~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-dg---~v~i~---d~ 166 (337)
..+...+ +.++++. ...|.+|++. ..+.+.++.+-+ .+..+..+..|.++++--.+. .. .+++| +.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVG---RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchh---heeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 3444445 7777755 6799999997 345667776642 345555556666887654211 12 46664 32
Q ss_pred cC--Cccc------c---------------------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce------eE
Q 019672 167 ME--LHSH------C---------------------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK------SY 211 (337)
Q Consensus 167 ~~--~~~~------~---------------------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~------~~ 211 (337)
.. ...+ | ..++.+++.-|-..-|+.|+.+ + +.||.+..... +-
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~-l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-K-LVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-E-EEEEEEEEEEEecccccEE
Confidence 21 0000 0 0467788887743345566665 3 46888754332 11
Q ss_pred eecc----CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 212 SFRR----GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 212 ~~~~----~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
.|.+ .+..-...-++|.. . |+|..++. .++|+.+.
T Consensus 176 DFe~~l~~~~~~~~p~~v~ic~--~---yiA~~s~~-ev~Vlkl~ 214 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAICE--G---YIAVMSDL-EVLVLKLE 214 (215)
T ss_pred echhhhhheecCceEEEEEEEe--e---EEEEecCC-EEEEEEEe
Confidence 1211 01111245667763 3 78877765 68888764
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.38 E-value=16 Score=31.65 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=71.5
Q ss_pred ceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE-EccCCc
Q 019672 96 SILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY-NVMELH 170 (337)
Q Consensus 96 ~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~-d~~~~~ 170 (337)
.+...+++++. ++++. ++.-.+|-...+.....+.. ...+..-++++++...+... .+...+++ +..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---g~~l~~PS~d~~g~~W~v~~--~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---GGSLTRPSWDPDGWVWTVDD--GSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---CCccccccccCCCCEEEEEc--CCCceEEEEecCCCc
Confidence 45555665543 43434 44333333333332223221 12455556667665555544 24445555 333332
Q ss_pred ccc-------c-CceEEEEeCCCCCEEEEEeC---CCcEEEEEEcC---CC--cee-EeeccC-CcceeEEEEEeecCCC
Q 019672 171 SHC-------E-APLAAIVLSSNGMYIATASE---QGTIIRVFLVS---EA--TKS-YSFRRG-TYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 171 ~~~-------~-~~i~~~~~s~dg~~lat~s~---dg~~i~vwd~~---~~--~~~-~~~~~~-~~~~~i~~l~fs~dg~ 232 (337)
... . ..|.++.+||||.++|.... ++. +.|=-+. .+ ..+ ..+... .....+.+++|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~-v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR-VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe-EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 211 1 28999999999999988773 343 3444332 23 111 111111 1123588999999998
Q ss_pred cccEEEEEeCCCc
Q 019672 233 FQDILVATSSSGS 245 (337)
Q Consensus 233 ~~~~las~s~dg~ 245 (337)
+++.+...+.
T Consensus 179 ---L~V~~~~~~~ 188 (253)
T PF10647_consen 179 ---LVVLGRSAGG 188 (253)
T ss_pred ---EEEEeCCCCC
Confidence 6665555443
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.02 E-value=23 Score=33.11 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
..+.+++.+|++++.|+..+=|++ .|+|+.++..+.-++
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV-~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRV-LLIDVARGIVVRMWK 346 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcE-EEEECCCChhhhhhc
Confidence 347899999999988887777884 699999998776553
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.84 E-value=17 Score=36.71 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=46.9
Q ss_pred eEEEEeeCCCccEEEEcCCCCccEEEEEEccC----------Ccc--cc--------------cCceEEEEeCCC---CC
Q 019672 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVME----------LHS--HC--------------EAPLAAIVLSSN---GM 187 (337)
Q Consensus 137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~----------~~~--~~--------------~~~i~~~~~s~d---g~ 187 (337)
.+.-+..++++.++|..|. ..|.|..+.. ++. .+ ...|..+.|+|. +.
T Consensus 86 ~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3456677888999998883 4466655532 111 11 156899999996 57
Q ss_pred EEEEEeCCCcEEEEEEcCCCc
Q 019672 188 YIATASEQGTIIRVFLVSEAT 208 (337)
Q Consensus 188 ~lat~s~dg~~i~vwd~~~~~ 208 (337)
.|+.=.+|++ +|+||+...+
T Consensus 163 ~l~vLtsdn~-lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNT-LRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCE-EEEEecCCCC
Confidence 8888888987 7999997654
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.61 E-value=32 Score=34.29 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=77.7
Q ss_pred EEEEEccCCC-EEEEEeCCCCCCCCCceEEEEECCCCCEEEE--E---EcCCceeEEEEcCCeEEEEE-CCeEEEE-ECC
Q 019672 50 SIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTALRE--L---NFLTSILAVRLNKKRLVIVL-REKTYIY-DAN 121 (337)
Q Consensus 50 ~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~--~---~~~~~v~~i~~~~~~~~v~~-d~~i~i~-d~~ 121 (337)
..+.|.|+.+ .++++. .++++.++++-. +.+.. . .....|....+..+++++.+ ++.+.+- +..
T Consensus 85 ~lI~mgWs~~eeLI~v~-------k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQ-------KDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVE 156 (829)
T ss_pred CeeeecccCCceEEEEe-------ccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCC
Confidence 5566666654 344443 489999999753 22222 2 12235666666667777766 6655543 333
Q ss_pred CCeeeeeecC-CCCCceEEEEeeCCC---ccEEEEcCCCCccEEEEEEccCCcc-cc-----cCceEEEEeCCCCCEEEE
Q 019672 122 TLAILDTIDT-VPNLKGLCAFSPSLN---ACFLAVPASTTKGSVLVYNVMELHS-HC-----EAPLAAIVLSSNGMYIAT 191 (337)
Q Consensus 122 ~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~la~~~~~~dg~v~i~d~~~~~~-~~-----~~~i~~~~~s~dg~~lat 191 (337)
.. .+..+.. +.+.-.-.+++..++ ...+.-... ..+ ..++-...... .+ ...+..+++||++++||-
T Consensus 157 ~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~-~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laL 233 (829)
T KOG2280|consen 157 EP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV-AVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLAL 233 (829)
T ss_pred cc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeech-hhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEE
Confidence 32 2222221 111111122222211 111111110 000 01111111111 11 156888999999999999
Q ss_pred EeCCCcEEEEEEcCCCceeEeec
Q 019672 192 ASEQGTIIRVFLVSEATKSYSFR 214 (337)
Q Consensus 192 ~s~dg~~i~vwd~~~~~~~~~~~ 214 (337)
=.++|. |.+-+....+.+.++.
T Consensus 234 yt~~G~-i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 234 YTETGK-IWVVSIDLSQILCEFN 255 (829)
T ss_pred EecCCc-EEEEecchhhhhhccC
Confidence 999997 5777777777766665
No 424
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=86.57 E-value=2.5 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.9
Q ss_pred cCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeee
Q 019672 297 RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNL 332 (337)
Q Consensus 297 ~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (337)
.++..+...+|+++||.+++.+.+ ..|.++|.+
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~tNe---i~L~KE~~~ 61 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDTNE---ITLKKEFYA 61 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTTTE---EEEEEEEEH
T ss_pred CCEEEEEecCCeEEEEEeCCCCCe---EEEEEeeec
Confidence 367777789999999999999997 788888764
No 425
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.45 E-value=3.3 Score=34.59 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=29.1
Q ss_pred ccEEEEEEccCCcc--ccc----CceEEEEeCCCCCEEEEEeCC
Q 019672 158 KGSVLVYNVMELHS--HCE----APLAAIVLSSNGMYIATASEQ 195 (337)
Q Consensus 158 dg~v~i~d~~~~~~--~~~----~~i~~~~~s~dg~~lat~s~d 195 (337)
.+.|.+|++..... ... +.|..++++..|.+|+|-=++
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence 46799999983332 222 889999999999999997544
No 426
>PHA03098 kelch-like protein; Provisional
Probab=86.38 E-value=33 Score=33.21 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=45.6
Q ss_pred CceEEEEECCCCCEEEEEEcC--CceeEEEEcCCeEEEEEC--------CeEEEEECCCCeeeeeecCCCCC-ceEEEEe
Q 019672 74 PRRLCLFNTTTGTALRELNFL--TSILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNL-KGLCAFS 142 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~v~~d--------~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~ 142 (337)
-+.+..||..+++....-..+ ..-.++....+.+++.+. +.+..||+.+.+-.. +...+.+ .+..+..
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~ 435 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIY 435 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEE
Confidence 356888998887654322211 111222333555655441 368889987653221 1111111 1222222
Q ss_pred eCCCccEEEEcCCCCc------cEEEEEEccCCc
Q 019672 143 PSLNACFLAVPASTTK------GSVLVYNVMELH 170 (337)
Q Consensus 143 ~~~~~~~la~~~~~~d------g~v~i~d~~~~~ 170 (337)
. ++...+.+|.... ..+.+||..+.+
T Consensus 436 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 436 H--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred E--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 2 3446666663211 237888887654
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.07 E-value=12 Score=34.90 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe
Q 019672 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA 45 (337)
Q Consensus 6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~ 45 (337)
.+-.+.++..+|++++.|+..+-| +.++|+.++..++...
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 344688999999998777653323 7899999987765543
No 428
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.00 E-value=4.5 Score=39.41 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=24.3
Q ss_pred EEEEEeec----CCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 222 IFSLSFGQ----SMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 222 i~~l~fs~----dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
..+++.++ +.. +|++-+.|+++||||+.+...
T Consensus 217 ~~~~~~~~~~~~~~~---~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 217 AASLAVSSSEINDDT---FLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEEEE-----ETTT---EEEEEETTSEEEEEETTTTCE
T ss_pred cceEEEecceeCCCC---EEEEEeCCCeEEEEECCCCeE
Confidence 45555655 555 999999999999999988765
No 429
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.99 E-value=28 Score=32.05 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce--eEEEEEeecCCCcccEEEEEeCC----CcEEEEecCCCccc
Q 019672 184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS--TIFSLSFGQSMQFQDILVATSSS----GSLHVFSPGFAINQ 257 (337)
Q Consensus 184 ~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~--~i~~l~fs~dg~~~~~las~s~d----g~v~iw~l~~~~~~ 257 (337)
|...+|+....++- +.+||++ |+.++.+..+.-.. ..+.+.+ +|+- --||++++. .+|+||.++.....
T Consensus 66 p~kSlIigTdK~~G-L~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l--~g~~-vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTDKKGG-LYVYDLD-GKELQSLPVGRPNNVDVRYGFPL--NGKT-VDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GGG-EEEEEETTTE-EEEEETT-S-EEEEE-SS-EEEEEEEEEEEE--TTEE-EEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred cccceEEEEeCCCC-EEEEcCC-CcEEEeecCCCcceeeeecceec--CCce-EEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 45567777777776 5799986 66666664332111 1233333 4541 015556543 57999998642110
Q ss_pred -CCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeeec
Q 019672 258 -RRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 333 (337)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (337)
....... ..++....+....+- .-......-+.++...+|.+..|.|..+..+.-.-.+.++|++-
T Consensus 141 L~~v~~~~----~p~~~~~~e~yGlcl------y~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~ 207 (381)
T PF02333_consen 141 LTDVTDPA----APIATDLSEPYGLCL------YRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG 207 (381)
T ss_dssp EEE-CBTT----C-EE-SSSSEEEEEE------EE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred ceEcCCCC----cccccccccceeeEE------eecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence 0000000 001111111111110 00000112477888899999999998665443456788888763
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.81 E-value=4.6 Score=40.73 Aligned_cols=153 Identities=13% Similarity=0.174 Sum_probs=76.9
Q ss_pred cCCceeEEEEcC----CeEEEEECCeEEEEECC--CCeeeeee-----cCCCCCceEEEEeeC-CCccEEEEcCCCCccE
Q 019672 93 FLTSILAVRLNK----KRLVIVLREKTYIYDAN--TLAILDTI-----DTVPNLKGLCAFSPS-LNACFLAVPASTTKGS 160 (337)
Q Consensus 93 ~~~~v~~i~~~~----~~~~v~~d~~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~la~~~~~~dg~ 160 (337)
+++.|..+.|-. +.. -.-+...|||+. .|+.+..+ ....++...+.+++- +...++++.. .+++
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~--~~~~ 206 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL--KGGE 206 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc--CCCc
Confidence 455566665522 111 113578889874 23332222 222222334444432 2334566555 4788
Q ss_pred EEEEEccCCc--cc--cc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CC----ceeEeeccCCcce
Q 019672 161 VLVYNVMELH--SH--CE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVS-EA----TKSYSFRRGTYPS 220 (337)
Q Consensus 161 v~i~d~~~~~--~~--~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~----~~~~~~~~~~~~~ 220 (337)
|++....+.. .. |. +.+.--.+||||+.+|+++.||. ++.|.+. +| .++.+.+.+ +..
T Consensus 207 i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkph-d~~ 284 (1283)
T KOG1916|consen 207 IRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPH-DKH 284 (1283)
T ss_pred eeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCC-CCC
Confidence 8876554321 11 21 22233348999999999999997 5777753 23 334444332 222
Q ss_pred e-EEEEEeecCC------CcccEEEEEeCCCc-EEEEecC
Q 019672 221 T-IFSLSFGQSM------QFQDILVATSSSGS-LHVFSPG 252 (337)
Q Consensus 221 ~-i~~l~fs~dg------~~~~~las~s~dg~-v~iw~l~ 252 (337)
+ |..+ |...- .+.-+++++++-|+ +++|.-.
T Consensus 285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred Cceeee-eccccccCCccceeEEEEecccCCcceeEeecc
Confidence 2 3333 33221 11114666666655 8888743
No 431
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.70 E-value=48 Score=34.45 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=97.8
Q ss_pred eEEEEECCCCCEEEEEEcCC-----ceeEEEEcC--Ce-EEEE-E------------CCeEEEEEC-CCCe---eeeeec
Q 019672 76 RLCLFNTTTGTALRELNFLT-----SILAVRLNK--KR-LVIV-L------------REKTYIYDA-NTLA---ILDTID 130 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~~-----~v~~i~~~~--~~-~~v~-~------------d~~i~i~d~-~~~~---~~~~~~ 130 (337)
.|++.|..+++.++.+.... .+.+..|+. +. ++.+ . ++.++.|++ ++++ .++...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 59999999999888776654 345555532 22 2211 1 344777776 3344 333332
Q ss_pred CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcE-EEEE
Q 019672 131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTI-IRVF 202 (337)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~-i~vw 202 (337)
. +..+.|+++..+ ..++..| ..+++||+-..+.+.+ ..|+.+.+ .+.+++.|...-.+ ...|
T Consensus 934 ~---~~~v~Ai~~f~~-~~LagvG----~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 934 I---PGPVGAICPFQG-RVLAGVG----RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred C---CccceEEeccCC-EEEEecc----cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEE
Confidence 2 234567777644 4455443 5799999976655432 55677776 45577777654443 2346
Q ss_pred EcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 203 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
+-...+ +..+.....+..|+++.+-..+ .+|.+..=|.+++-.+....
T Consensus 1004 ~~~~n~-l~~fadD~~pR~Vt~~~~lD~~----tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1004 RREDNQ-LIVFADDPVPRHVTALELLDYD----TVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred ecCCCe-EEEEeCCCccceeeEEEEecCC----ceeeccccCcEEEEECCCcc
Confidence 554444 4445433333347777766555 58888888999888876543
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.66 E-value=26 Score=31.28 Aligned_cols=138 Identities=13% Similarity=0.183 Sum_probs=65.2
Q ss_pred eeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCC----CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc--
Q 019672 97 ILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV----PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-- 170 (337)
Q Consensus 97 v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-- 170 (337)
..+|.+..+...++.+..+.+.....++.-..+... ..+..+.++ +++..+++.. .|. ||....+-
T Consensus 64 l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l---~~~~~~l~~~---~G~--iy~T~DgG~t 135 (302)
T PF14870_consen 64 LNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL---GDGSAELAGD---RGA--IYRTTDGGKT 135 (302)
T ss_dssp EEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEE---ETTEEEEEET---T----EEEESSTTSS
T ss_pred EEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc---CCCcEEEEcC---CCc--EEEeCCCCCC
Confidence 566777777666666555555555555433333211 122223332 2222333322 343 33322221
Q ss_pred --ccc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 171 --SHC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 171 --~~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
.+. .+.+..+..++||+++|++ ..|.++.-||- |+. -....+. ....|.+|.|+||+. +.. ....|
T Consensus 136 W~~~~~~~~gs~~~~~r~~dG~~vavs-~~G~~~~s~~~--G~~~w~~~~r~-~~~riq~~gf~~~~~---lw~-~~~Gg 207 (302)
T PF14870_consen 136 WQAVVSETSGSINDITRSSDGRYVAVS-SRGNFYSSWDP--GQTTWQPHNRN-SSRRIQSMGFSPDGN---LWM-LARGG 207 (302)
T ss_dssp EEEEE-S----EEEEEE-TTS-EEEEE-TTSSEEEEE-T--T-SS-EEEE---SSS-EEEEEE-TTS----EEE-EETTT
T ss_pred eeEcccCCcceeEeEEECCCCcEEEEE-CcccEEEEecC--CCccceEEccC-ccceehhceecCCCC---EEE-EeCCc
Confidence 111 1778999999999988776 56776666664 332 1222222 234699999999987 444 44778
Q ss_pred cEEEEe
Q 019672 245 SLHVFS 250 (337)
Q Consensus 245 ~v~iw~ 250 (337)
.|++=+
T Consensus 208 ~~~~s~ 213 (302)
T PF14870_consen 208 QIQFSD 213 (302)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 887776
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.61 E-value=28 Score=33.19 Aligned_cols=125 Identities=14% Similarity=0.264 Sum_probs=74.4
Q ss_pred CCceEEEEECCCCCEEEEEEcCCceeEEEEcCC---------eEEEEE-CCeEEEEECCCC-eeeeeecCCCCCce----
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVIVL-REKTYIYDANTL-AILDTIDTVPNLKG---- 137 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~---- 137 (337)
..+.+.=-|++.|+.+.+...+..| -+.++|. +-+++. +..|.--|.+-. ..+...+. ....+
T Consensus 488 ~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-KdY~tKn~F 565 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-KDYKTKNKF 565 (776)
T ss_pred CcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-hhccccccc
Confidence 4677888899999999998887776 4555543 233333 666666665422 11111110 00001
Q ss_pred EEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---c--ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---H--CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---~--~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~ 205 (337)
.++.. ..+.++|.++ ..|.|++||--..+. + ....|..+..+.+|+++.+.+.. . +-+-|++
T Consensus 566 ss~~t--TesGyIa~as--~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-llL~d~~ 632 (776)
T COG5167 566 SSGMT--TESGYIAAAS--RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-LLLTDVP 632 (776)
T ss_pred ccccc--ccCceEEEec--CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-EEEEecc
Confidence 11111 2234888887 489999999543221 1 12779999999999998877765 3 4466653
No 434
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.68 E-value=19 Score=37.98 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=77.8
Q ss_pred CCceEEEEECCCCCEEEEEEc-CCceeEEEEc---C--------CeEEEEECCeEEEEECCCCee-------eeeecCCC
Q 019672 73 SPRRLCLFNTTTGTALRELNF-LTSILAVRLN---K--------KRLVIVLREKTYIYDANTLAI-------LDTIDTVP 133 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~---~--------~~~~v~~d~~i~i~d~~~~~~-------~~~~~~~~ 133 (337)
-|+.+.+|+.+++.....+.. .+.|..+.+- | ..+++++--.|.++-+...+. ...+..+.
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 389999999999766666543 4466666542 2 235556666777765532111 11122223
Q ss_pred CCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc----CC---c-c-------------------cc---cCceEEEEeC
Q 019672 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----EL---H-S-------------------HC---EAPLAAIVLS 183 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~----~~---~-~-------------------~~---~~~i~~~~~s 183 (337)
++..+.++....+|. ++.+| .|| .+|.+. .+ + + .. ..+|..++++
T Consensus 177 dg~~V~~I~~t~nGR-IF~~G--~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IFFAG--RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred CCceEEEEEeccCCc-EEEee--cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 445666766444554 45555 366 444431 11 0 0 01 2689999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCC
Q 019672 184 SNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 184 ~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
..-+.+.+=++.|+ |++||+..
T Consensus 252 ~SR~IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCce-EEEEEccC
Confidence 98889999999997 69999975
No 435
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.32 E-value=34 Score=31.54 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCceEEEEECCCCCEEEEEEcCCceeEE------EEcCCe--EEEEE--C---CeEEEEECC--CCeeeeeecCC-----
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSILAV------RLNKKR--LVIVL--R---EKTYIYDAN--TLAILDTIDTV----- 132 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i------~~~~~~--~~v~~--d---~~i~i~d~~--~~~~~~~~~~~----- 132 (337)
..+-+.+||+. |+.+..+.. .....+ .+.... +++++ + ++|++|.+. ++. +..+...
T Consensus 76 K~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~ 152 (381)
T PF02333_consen 76 KKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIA 152 (381)
T ss_dssp TTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE
T ss_pred CCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccc
Confidence 46789999996 556666643 233333 333333 34555 2 479999774 333 3333211
Q ss_pred ---CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC---Cc----cccc----CceEEEEeCCCCCEEEEEeCCCcE
Q 019672 133 ---PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME---LH----SHCE----APLAAIVLSSNGMYIATASEQGTI 198 (337)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~---~~----~~~~----~~i~~~~~s~dg~~lat~s~dg~~ 198 (337)
..+.++|......++.+.++.+. .+|.+..|.+.. +. .+.+ ..+..|+.+....+|..|-++--
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G- 230 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG- 230 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE-
T ss_pred cccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccE-
Confidence 11234444433334555555443 479998888753 21 1222 77889999988888888888754
Q ss_pred EEEEEcCC-----CceeEeeccCCcceeEEEEEee--cCCCcccEEEEEeC-CCcEEEEecCCC
Q 019672 199 IRVFLVSE-----ATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSS-SGSLHVFSPGFA 254 (337)
Q Consensus 199 i~vwd~~~-----~~~~~~~~~~~~~~~i~~l~fs--~dg~~~~~las~s~-dg~v~iw~l~~~ 254 (337)
|.-|+.+. ++.+......+..+.|-.|+.- ++++ .||+++|. +++..||+.+..
T Consensus 231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~--gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGK--GYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC---EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCC--eEEEEEcCCCCeEEEEecCCC
Confidence 55566641 2233222222223456666664 4444 25555554 568999997643
No 436
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=83.85 E-value=44 Score=32.42 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=42.4
Q ss_pred EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC
Q 019672 199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR 259 (337)
Q Consensus 199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~ 259 (337)
+.|.| .+.+.+.++..-.....|+++.|--|-- |++|=-.---+.+.||..+++|+-
T Consensus 306 lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~---Y~VTFrqvDPLfviDLsdP~~P~v 362 (521)
T PF09826_consen 306 LYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRA---YLVTFRQVDPLFVIDLSDPANPKV 362 (521)
T ss_pred EEEEC-CCCcEeEEccccCCCceEEEEEEeCCeE---EEEEEeecCceEEEECCCCCCCce
Confidence 45666 5666666664333345699999998876 888887777899999999888763
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.44 E-value=57 Score=33.39 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc----------cCc----------eEEEEeCCCCCEEEEEe
Q 019672 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC----------EAP----------LAAIVLSSNGMYIATAS 193 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~----------~~~----------i~~~~~s~dg~~lat~s 193 (337)
.+..-++|.|... ..+|... ..|...|||+....... .+. -..+.|.++-+.|+..+
T Consensus 146 ~~~aDv~FnP~~~-~q~AiVD--~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQ-RQFAIVD--EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CccceEEeccCcc-ceEEEEe--ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 3333455555333 3778877 58999999992211110 022 23778888877888777
Q ss_pred CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 194 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 194 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
... +.++|+++......+........|..+.-+|+...+ .++.++ ..|-..++....
T Consensus 223 r~~--l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~-~FiLTs--~eiiw~~~~~~~ 279 (765)
T PF10214_consen 223 RSK--LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSH-VFILTS--KEIIWLDVKSSS 279 (765)
T ss_pred CCc--eEEEECCCCCccchhccCCChhheeeEEecCCccce-EEEEec--CeEEEEEccCCC
Confidence 653 468999887653323222234569999988883210 333333 458777877643
No 438
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.72 E-value=42 Score=31.41 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=25.0
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.|.+|+..+..+ .|.+.+.+|.|++|++..
T Consensus 191 ~I~~v~~d~~r~---~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRR---LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTT---EEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcC---EEEEEeCCCcEEEEEEeC
Confidence 388999988888 999999999999999975
No 439
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.37 E-value=67 Score=33.49 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=68.7
Q ss_pred eEEEeCCCCcEEEEEee----CCEEEEEEccCC--CE-EEEEeCCCCC-----CCCCceEEEEECC-CCC---EEEEEEc
Q 019672 30 FKIFDSSTGRLCYERAV----GAFSIVEMLYSS--SL-LAIVGAGEQP-----SLSPRRLCLFNTT-TGT---ALRELNF 93 (337)
Q Consensus 30 ~~vw~~~~~~~~~~~~~----~~~~~~~~~~~~--~~-~~~~~~g~~~-----~~~d~~v~iwd~~-~~~---~~~~~~~ 93 (337)
++++|..+++.+...+. ....+..+.|++ .. +..++..... .-.++.+..|++- .|+ .+...+.
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 57888887766544332 122333333333 22 2222222110 1235567777753 344 2333445
Q ss_pred CCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672 94 LTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (337)
Q Consensus 94 ~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (337)
+.+|.+|.-..++++++..+.+++||+...++++..+...-+..+..+... ...++++..
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~ 994 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDI 994 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeec
Confidence 567888877777777777999999999988777665443333445555443 335666654
No 440
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.05 E-value=17 Score=30.93 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=51.0
Q ss_pred EEEEEcCCCCEEEEEcCCc--eEEEe--CCCCc-----EEEEEeeC-CEE-----EEEEccCCCEEEEEeCCCCCCCCCc
Q 019672 11 FFVSFNQDNSGFALSTKDG--FKIFD--SSTGR-----LCYERAVG-AFS-----IVEMLYSSSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 11 ~~~~fs~dg~~la~g~~~g--~~vw~--~~~~~-----~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (337)
+.++|+.|.+.+..-..-. +.-|| +.+|. .++..... +.. -.++.-++++.+.+ +.-+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-------~ng~ 233 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-------FNGG 233 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-------ecCc
Confidence 3567888887766543333 44465 66663 34443220 000 01122233333222 2346
Q ss_pred eEEEEECCCCCEEEEEEcCC-ceeEEEEcCC
Q 019672 76 RLCLFNTTTGTALRELNFLT-SILAVRLNKK 105 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~ 105 (337)
+|.-.|+.+|+.+.++..+. .|++.+|-..
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 89999999999999999886 6888888543
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.96 E-value=1.6 Score=43.86 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=52.3
Q ss_pred ccEEEEEEcc--CCccccc----------CceEEEEeC---CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-
Q 019672 158 KGSVLVYNVM--ELHSHCE----------APLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST- 221 (337)
Q Consensus 158 dg~v~i~d~~--~~~~~~~----------~~i~~~~~s---~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~- 221 (337)
-|...|||+. .++.... .++.-|.|- ++..++..+-.+|+ |++.++.+-.. .+-++|....
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~--~l~rsHs~~~~ 228 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR--SLFRSHSQRVT 228 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechHHH--HHHHhcCCCcc
Confidence 5778999875 3332221 344444444 45556666666666 68766654322 2222221111
Q ss_pred ---------EEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 222 ---------IFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 222 ---------i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+.--..||||+ .+|.++.||.+++|.+-
T Consensus 229 d~a~~~~g~~~l~~lSpDGt---v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 229 DMAFFAEGVLKLASLSPDGT---VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cHHHHhhchhhheeeCCCCc---EEEEeecCCccceeeee
Confidence 11123789999 99999999999999863
No 442
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=81.87 E-value=33 Score=29.63 Aligned_cols=146 Identities=15% Similarity=0.088 Sum_probs=74.1
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC--CcEEEEecCC
Q 019672 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS--GSLHVFSPGF 253 (337)
Q Consensus 176 ~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d--g~v~iw~l~~ 253 (337)
.|.--+-+|+-..+++.-..+. ++|||+. |+.++.+..+.....=..-.|--.|+. =-|+++|+. .+|.+|.++.
T Consensus 57 AIwVh~t~P~kS~vItt~Kk~G-l~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~-idiaaASdR~~~~i~~y~Idp 133 (364)
T COG4247 57 AIWVHATNPDKSLVITTVKKAG-LRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQS-IDIAAASDRQNDKIVFYKIDP 133 (364)
T ss_pred ceEeccCCcCcceEEEeeccCC-eEEEecC-CCeeeecCCCcccccccccCcccCCeE-EEEEecccccCCeEEEEEeCC
Confidence 3444455788788887777766 4899985 666666654421111011123333431 124455443 4688888864
Q ss_pred CcccC-CCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeee
Q 019672 254 AINQR-RGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNL 332 (337)
Q Consensus 254 ~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (337)
....- ....+.. ......++....+-. .-+.. ..-++++-..+|.+.-|.+-.+..+.-.-++.++|+|
T Consensus 134 ~~~~L~sitD~n~----p~ss~~s~~YGl~ly-----rs~kt-gd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~ 203 (364)
T COG4247 134 NPQYLESITDSNA----PYSSSSSSAYGLALY-----RSPKT-GDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKI 203 (364)
T ss_pred CccceeeccCCCC----ccccCcccceeeEEE-----ecCCc-CcEEEEEecCCCceeEEEEEecCCceEcceeeEeeec
Confidence 43110 0000000 000111111111110 00111 1246777788999999999666444456778889988
Q ss_pred cc
Q 019672 333 LT 334 (337)
Q Consensus 333 ~~ 334 (337)
.+
T Consensus 204 ~t 205 (364)
T COG4247 204 PT 205 (364)
T ss_pred CC
Confidence 65
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.66 E-value=14 Score=29.77 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=20.4
Q ss_pred cCEEEEEEeCCcEEEEEEecCCCCeeceEEe
Q 019672 297 RASVSVITYNGYFVEYIFSINNCCESTWTLD 327 (337)
Q Consensus 297 ~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~ 327 (337)
...|++.+.+|.+.+|.-.... .+.|...
T Consensus 103 rClLavLTs~~~l~l~~~~~~~--~~~W~~v 131 (173)
T PF12657_consen 103 RCLLAVLTSNGRLSLYGPPGNP--QGEWNRV 131 (173)
T ss_pred ceEEEEEcCCCeEEEEecCCCc--cccEeee
Confidence 4678899999999999765442 2346654
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.62 E-value=11 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=25.4
Q ss_pred eEEEEEeecCCCcc---cEEEEEeCCCcEEEEecCC
Q 019672 221 TIFSLSFGQSMQFQ---DILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 221 ~i~~l~fs~dg~~~---~~las~s~dg~v~iw~l~~ 253 (337)
.|.+++|||-|-.+ -+||+-..++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58899999954211 2799999999999998653
No 445
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.17 E-value=34 Score=29.25 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=56.8
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEE--ccCCccccc--------------CceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYN--VMELHSHCE--------------APLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d--~~~~~~~~~--------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
+++++.+...+.+..+ .+-+|.-|| ..++..... -.--.++++-+|++.++.-+-|++ .-.|
T Consensus 162 gl~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V-~~~d 239 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV-QKVD 239 (310)
T ss_pred cccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE-EEEC
Confidence 4455556666666655 466776676 555443221 112345557788888877777774 6789
Q ss_pred cCCCceeEeeccCCcceeEEEEEee
Q 019672 204 VSEATKSYSFRRGTYPSTIFSLSFG 228 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~l~fs 228 (337)
..+|+.+.++... ...|+|++|-
T Consensus 240 p~tGK~L~eiklP--t~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLP--TPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcC--CCceEEEEec
Confidence 9999999998754 3469999997
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.03 E-value=51 Score=31.50 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=71.1
Q ss_pred eEEEEECCCCeeeeeecCCCCCceEEEEeeCC------CccEEEEcCCCCccEEEEEEccCCc--cc--------ccCce
Q 019672 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSL------NACFLAVPASTTKGSVLVYNVMELH--SH--------CEAPL 177 (337)
Q Consensus 114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~la~~~~~~dg~v~i~d~~~~~--~~--------~~~~i 177 (337)
+++-.|+..|+.+.+...+... ++.+.|.- +.+.|+-- .+..|.-.|.+-.. .. .+...
T Consensus 491 kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl---S~~svFrIDPR~~gNKi~v~esKdY~tKn~F 565 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL---SDYSVFRIDPRARGNKIKVVESKDYKTKNKF 565 (776)
T ss_pred cceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee---cccceEEecccccCCceeeeeehhccccccc
Confidence 5666778888887777665442 33333321 12223222 24556666654321 11 01333
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 178 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 178 ~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
+|..-..+| ++|.||..|- ||+||--. ..-++.-.+. ...|..+..+.+|+ ++++.+ ..++-+-|++-
T Consensus 566 ss~~tTesG-yIa~as~kGD-irLyDRig-~rAKtalP~l-G~aIk~idvta~Gk---~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 566 SSGMTTESG-YIAAASRKGD-IRLYDRIG-KRAKTALPGL-GDAIKHIDVTANGK---HILATC-KNYLLLTDVPI 633 (776)
T ss_pred cccccccCc-eEEEecCCCc-eeeehhhc-chhhhcCccc-ccceeeeEeecCCc---EEEEee-cceEEEEeccc
Confidence 343333344 8999999998 79999532 2222222222 34588889999999 666554 45788888753
No 447
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=79.48 E-value=8.9 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=24.5
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVS 205 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~ 205 (337)
..-+.|+++|++++|..++.-+..|+++...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 5567899999999988887665557888764
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.24 E-value=4.6 Score=39.33 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=28.6
Q ss_pred ceEEEEeCC----CCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 176 PLAAIVLSS----NGMYIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 176 ~i~~~~~s~----dg~~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
...++++++ +..+|++-+.|++ +|+||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEe
Confidence 456677777 6789999999998 699999999996654
No 449
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=79.22 E-value=64 Score=31.29 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=100.3
Q ss_pred CCCceEEEEECCCCCEEEEEEc---CCceeEEEEcCCeEEEEE---CCeEEEEECCCC---eeeeeecCCCCCceEEEEe
Q 019672 72 LSPRRLCLFNTTTGTALRELNF---LTSILAVRLNKKRLVIVL---REKTYIYDANTL---AILDTIDTVPNLKGLCAFS 142 (337)
Q Consensus 72 ~~d~~v~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~ 142 (337)
...+.|.+.| +.-+.+.+++. .+.|.++.|-+++..+++ -+=+++.|+.+. +.+..++.+.- .--++
T Consensus 301 ~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGf---S~YLH 376 (521)
T PF09826_consen 301 TSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGF---SDYLH 376 (521)
T ss_pred CceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccc---hhcee
Confidence 3567899988 66666666643 458999999999988887 346888888764 55666654322 22335
Q ss_pred eCCCccEEEEcCCCCcc----------EEEEEEccCCccccc----------------CceEEEEeCCCCCEEEEEeC--
Q 019672 143 PSLNACFLAVPASTTKG----------SVLVYNVMELHSHCE----------------APLAAIVLSSNGMYIATASE-- 194 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg----------~v~i~d~~~~~~~~~----------------~~i~~~~~s~dg~~lat~s~-- 194 (337)
|-+++.+|..+-. .+. .|.+||+........ ..-.++.|+++.++|+---.
T Consensus 377 P~~e~~LlGiG~~-~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~ 455 (521)
T PF09826_consen 377 PYDENHLLGIGKD-TDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSS 455 (521)
T ss_pred ECCCCeEEEEccc-CcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEc
Confidence 5455555555432 333 467799876543211 22457888888777764433
Q ss_pred ------CCcEEEEEEcCCCce---eEeeccCCc----ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 195 ------QGTIIRVFLVSEATK---SYSFRRGTY----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 195 ------dg~~i~vwd~~~~~~---~~~~~~~~~----~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.| +.|+++...+. ...+..... ...+....+..| .|-+-|. +.|+++|+++
T Consensus 456 ~~~~~~~g--~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi~d-----~lYtvS~-~~i~~~~l~t 519 (521)
T PF09826_consen 456 YGYFNFQG--AYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYIGD-----TLYTVSD-NGIKAYDLNT 519 (521)
T ss_pred cCccccce--EEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEECC-----EEEEEEC-CEEEEEehHh
Confidence 44 35777762222 222221110 012666666644 4555554 4799998865
No 450
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.66 E-value=43 Score=28.95 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=63.0
Q ss_pred EEEeeCCCccEEEEcC-CCCccEEEEEEccCCccc--ccCceEEEEeCCCCCEEEEEeCCCcEEEEE-EcCCCcee-Eee
Q 019672 139 CAFSPSLNACFLAVPA-STTKGSVLVYNVMELHSH--CEAPLAAIVLSSNGMYIATASEQGTIIRVF-LVSEATKS-YSF 213 (337)
Q Consensus 139 ~~~~~~~~~~~la~~~-~~~dg~v~i~d~~~~~~~--~~~~i~~~~~s~dg~~lat~s~dg~~i~vw-d~~~~~~~-~~~ 213 (337)
...+.++++..+|+.. ......+.++........ ....+..-.|+++|...+....+.. .+++ +..+++.. ..+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGEPVEV 105 (253)
T ss_pred cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcceeEEe
Confidence 3444455565555433 102344555554332222 1257788899999887766665554 4566 33444332 122
Q ss_pred ccCCcceeEEEEEeecCCCcccEEEEEe---CCCcEEEEecCCC
Q 019672 214 RRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFSPGFA 254 (337)
Q Consensus 214 ~~~~~~~~i~~l~fs~dg~~~~~las~s---~dg~v~iw~l~~~ 254 (337)
........|.++.+||||. .+|.-. .++.|.|=-+...
T Consensus 106 ~~~~~~~~I~~l~vSpDG~---RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 106 DWPGLRGRITALRVSPDGT---RVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred cccccCCceEEEEECCCCc---EEEEEEecCCCCeEEEEEEEeC
Confidence 1111112799999999999 877776 3467877776543
No 451
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.26 E-value=29 Score=26.77 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--------EEEEe-eCCEEEEEE-cc--C-CCEEEEEeCCCCCCCCCc
Q 019672 10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--------CYERA-VGAFSIVEM-LY--S-SSLLAIVGAGEQPSLSPR 75 (337)
Q Consensus 10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--------~~~~~-~~~~~~~~~-~~--~-~~~~~~~~~g~~~~~~d~ 75 (337)
|..-+|.....+|++++..+ +.|++...... +..++ ...+..++. .+ + ..-.++++. ..
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-------~t 73 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-------QT 73 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-------cc
Confidence 34567888888899887655 68887654321 11111 123333321 11 1 122334443 67
Q ss_pred eEEEEECCCCCEEEEEEcCCceeEEEEc-----CCeEEEEE-CCeEEEEECCCCeeeee
Q 019672 76 RLCLFNTTTGTALRELNFLTSILAVRLN-----KKRLVIVL-REKTYIYDANTLAILDT 128 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~~~v~~i~~~-----~~~~~v~~-d~~i~i~d~~~~~~~~~ 128 (337)
.|-.||.+.+..+..-+.+.-|.++.+- +..+++++ .-.|.-||....+...+
T Consensus 74 ~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 74 SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 9999999998877766666767776652 23344443 44666677655444443
No 452
>PRK13684 Ycf48-like protein; Provisional
Probab=78.12 E-value=53 Score=29.73 Aligned_cols=143 Identities=10% Similarity=0.089 Sum_probs=74.8
Q ss_pred ceeEEEEcCCeEEEEE--CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc--
Q 019672 96 SILAVRLNKKRLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-- 170 (337)
Q Consensus 96 ~v~~i~~~~~~~~v~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-- 170 (337)
.+.++.+.++..+++. .+.+.. ....+ +.-..+.. .....+.++...+++..++++. .|.+.+=....+.
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~-s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~---~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYS-TWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLAR---GGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEE-EcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEec---CCEEEEccCCCCCcc
Confidence 4666777666544443 444332 22222 22222221 2223455666666666666543 5655432222221
Q ss_pred -cc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-CCcceeEEEEEeecCCCcccEEEEEeC
Q 019672 171 -SH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLSFGQSMQFQDILVATSS 242 (337)
Q Consensus 171 -~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~~~~las~s~ 242 (337)
.. ....+..+++.|+++.++ ++.+|. + +.....|+.-...+. ...+...+.+.|-.+++ ....+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~-v-~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGT-L-LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK----GFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCe-E-EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCc----eEEECC
Confidence 11 113478899999887655 456775 3 455555554443321 11234578888887776 455667
Q ss_pred CCcEEEEe
Q 019672 243 SGSLHVFS 250 (337)
Q Consensus 243 dg~v~iw~ 250 (337)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78886665
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.82 E-value=39 Score=30.54 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---c---------ccCceEEEEeCCC----CCEEEEEeCC-------
Q 019672 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---H---------CEAPLAAIVLSSN----GMYIATASEQ------- 195 (337)
Q Consensus 139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---~---------~~~~i~~~~~s~d----g~~lat~s~d------- 195 (337)
.++++.|++.++++. ..|.|++++. .+.. + .+.....++|+|+ +.+.++.+..
T Consensus 5 ~~~a~~pdG~l~v~e---~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAE---RSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEETTSCEEEEE---TTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred eEEEEeCCCcEEEEe---CCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 344555667676654 3788998882 2221 1 1156799999994 5544444422
Q ss_pred -CcEEEEEEcCCC-------ceeE-eecc-CCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 196 -GTIIRVFLVSEA-------TKSY-SFRR-GTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 196 -g~~i~vwd~~~~-------~~~~-~~~~-~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
..+. -|....+ +.+. .+.. ......-..|+|.|||. ++++.++.+
T Consensus 81 ~~~v~-r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~---LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVV-RFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK---LYVSVGDGG 135 (331)
T ss_dssp EEEEE-EEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE---EEEEEB-TT
T ss_pred ceeeE-EEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc---EEEEeCCCC
Confidence 1222 2333333 1111 1111 01122356799999998 555555544
No 454
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.77 E-value=6.7 Score=20.97 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred eEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 221 TIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
.|.+++.++. +++++.+.+.+|||.
T Consensus 3 ~i~aia~g~~-----~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS-----WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC-----EEEEEeCCCeEEecC
Confidence 4778887754 899999999999984
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.69 E-value=11 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=24.1
Q ss_pred CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672 105 KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGL 138 (337)
Q Consensus 105 ~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~ 138 (337)
+.++++. +++|.++|..+++.+..+....+|..+
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i 39 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGV 39 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceE
Confidence 4455555 679999999888888888765555443
No 456
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.23 E-value=77 Score=31.15 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=95.0
Q ss_pred CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc--CCceeEEEEcCCeEEEEE--C------CeEEEEECCCCeeeee
Q 019672 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF--LTSILAVRLNKKRLVIVL--R------EKTYIYDANTLAILDT 128 (337)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~i~~~~~~~~v~~--d------~~i~i~d~~~~~~~~~ 128 (337)
..+..+||-......-+.+..+|.++++....... ...-.++...++.+++++ + +++..||..+.+=..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 34445555321122347899999998865543322 334455666677777765 5 368889987764211
Q ss_pred ecCCCCCceEEEEeeCCCccEEEEcCCCC---ccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcE
Q 019672 129 IDTVPNLKGLCAFSPSLNACFLAVPASTT---KGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTI 198 (337)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~---dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~ 198 (337)
+..-..+..-.+++. -++.+.|++|.+. -.+|..||..+.+-... .....+ .-+|...|.|+.++..
T Consensus 364 ~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSS 440 (571)
T ss_pred cCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCc
Confidence 111011111122222 1355777777421 13466788776542111 222222 2378888888876642
Q ss_pred -----EEEEEcCCCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc-----EEEEecCC
Q 019672 199 -----IRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS-----LHVFSPGF 253 (337)
Q Consensus 199 -----i~vwd~~~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~-----v~iw~l~~ 253 (337)
+..||..+++- +..+... + .-..++. -++. +++.|+.|+. |..||..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~--R-~~~g~a~-~~~~---iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTR--R-SGFGVAV-LNGK---IYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccc--c-ccceEEE-ECCE---EEEECCccCCCccceEEEEcCCC
Confidence 45677766542 2222110 0 0112333 3566 8999998873 55566543
No 457
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=75.85 E-value=89 Score=31.13 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE--EEee---CCEEEEEE------ccCCCEEEEEeC-CCCCCCC
Q 019672 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAV---GAFSIVEM------LYSSSLLAIVGA-GEQPSLS 73 (337)
Q Consensus 7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~--~~~~---~~~~~~~~------~~~~~~~~~~~~-g~~~~~~ 73 (337)
++.|-.+.|.++++.+.+-..+| +.+||.+.+.+.. .... ..+..-.+ ....+++.+++. . ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~----~~ 204 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLS----NS 204 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcC----CC
Confidence 46788999999999988888877 5999983322111 1110 11111111 122355555543 1 02
Q ss_pred CceEEEEEC-CCCCEEEEEE---c--CC-ceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCC---CC-ceEEEEe
Q 019672 74 PRRLCLFNT-TTGTALRELN---F--LT-SILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVP---NL-KGLCAFS 142 (337)
Q Consensus 74 d~~v~iwd~-~~~~~~~~~~---~--~~-~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~---~~-~~~~~~~ 142 (337)
.-..+++.+ ..+..+.++. . .. .-..+++....++...+++|.+|++...+..+++..+. .. ..+.++.
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 346777777 2223333332 1 11 11234445455555568899999999998888875541 11 2344554
Q ss_pred eCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672 143 PSLNACFLAVPASTTKGSVLVYNVMELH 170 (337)
Q Consensus 143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~ 170 (337)
+-..+..|.+. ++.|.+.|+.-..
T Consensus 285 ~~s~nRvLLs~----~nkIyLld~~~~s 308 (670)
T PF10395_consen 285 PPSPNRVLLSV----NNKIYLLDLKFES 308 (670)
T ss_pred cCCCCeEEEEc----CCEEEEEeehhhh
Confidence 43333444443 5789999986443
No 458
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=73.88 E-value=1.1e+02 Score=31.32 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCCeEEEEEcCCC-CEEEEEcCCce-EEEeCCCCcE------EEEEe-eCCE----------EEEEEccCCCEEEEEeCC
Q 019672 7 SYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTGRL------CYERA-VGAF----------SIVEMLYSSSLLAIVGAG 67 (337)
Q Consensus 7 ~~~v~~~~fs~dg-~~la~g~~~g~-~vw~~~~~~~------~~~~~-~~~~----------~~~~~~~~~~~~~~~~~g 67 (337)
..+.-.++|||.. +.||+-..+|. .||++..... ..... .+.+ .-+.+..+.+.++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-- 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-- 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--
Confidence 4467789999865 56888888886 9999932211 11100 1111 1233434444554443
Q ss_pred CCCCCCCceEEEEECCCCCEEE---EEEcCCceeEEEEcCC---eEEEEECCeEEEEECCC
Q 019672 68 EQPSLSPRRLCLFNTTTGTALR---ELNFLTSILAVRLNKK---RLVIVLREKTYIYDANT 122 (337)
Q Consensus 68 ~~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~i~~~~~---~~~v~~d~~i~i~d~~~ 122 (337)
...+.+.|++++.... .......|.++.-++. ++++.+...|...++..
T Consensus 223 ------r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 223 ------RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ------CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 4678888888775522 2222347888887665 78888899999999876
No 459
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.56 E-value=1.1e+02 Score=31.24 Aligned_cols=183 Identities=9% Similarity=0.073 Sum_probs=101.6
Q ss_pred CCceEEEEECCCCCEEEEEEcCCce---------eEEEE------------------cCCeEEEEE-CCeEEEEECCCCe
Q 019672 73 SPRRLCLFNTTTGTALRELNFLTSI---------LAVRL------------------NKKRLVIVL-REKTYIYDANTLA 124 (337)
Q Consensus 73 ~d~~v~iwd~~~~~~~~~~~~~~~v---------~~i~~------------------~~~~~~v~~-d~~i~i~d~~~~~ 124 (337)
.++.|.-.|.++|+.+-++....++ ..+.+ ..+++++.+ |+.+.-.|.++++
T Consensus 202 ~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk 281 (764)
T TIGR03074 202 PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGK 281 (764)
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCC
Confidence 3788999999999988877654322 12222 123555555 8899999999998
Q ss_pred eeeeecCCCC----------CceEEEEeeCC--CccEEEEcCC--------CCccEEEEEEccCCccccc----------
Q 019672 125 ILDTIDTVPN----------LKGLCAFSPSL--NACFLAVPAS--------TTKGSVLVYNVMELHSHCE---------- 174 (337)
Q Consensus 125 ~~~~~~~~~~----------~~~~~~~~~~~--~~~~la~~~~--------~~dg~v~i~d~~~~~~~~~---------- 174 (337)
.+..+..... +.+.......| .+..+++++. ..+|.|+-+|+.+++..-+
T Consensus 282 ~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~ 361 (764)
T TIGR03074 282 LCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTA 361 (764)
T ss_pred EEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCccc
Confidence 8866532110 00001111111 0113333321 0158899999998876421
Q ss_pred ------------Cce-EEEEeCCCCCEEEEEeC------------------CCcEEEEEEcCCCceeEeeccCCcc----
Q 019672 175 ------------APL-AAIVLSSNGMYIATASE------------------QGTIIRVFLVSEATKSYSFRRGTYP---- 219 (337)
Q Consensus 175 ------------~~i-~~~~~s~dg~~lat~s~------------------dg~~i~vwd~~~~~~~~~~~~~~~~---- 219 (337)
..+ ...+++|+..++..+.. .++ |--.|.++|+....++..+|.
T Consensus 362 ~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s-lvALD~~TGk~~W~~Q~~~hD~WD~ 440 (764)
T TIGR03074 362 PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS-LVALDATTGKERWVFQTVHHDLWDM 440 (764)
T ss_pred CCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce-EEEEeCCCCceEEEecccCCccccc
Confidence 001 23455555444333211 133 335788999988777543321
Q ss_pred ---eeEEEEEeec-CCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672 220 ---STIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPGFAIN 256 (337)
Q Consensus 220 ---~~i~~l~fs~-dg~~~~~las~s~dg~v~iw~l~~~~~ 256 (337)
++..-+.+.. +|+..+.++.++.+|.++++|-++++.
T Consensus 441 D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 441 DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 1111122332 663223799999999999999887653
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.24 E-value=85 Score=29.28 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=60.8
Q ss_pred EEeeCCCccEEEEcCCCCccEEEE-EEccCC--ccc---ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-----
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLV-YNVMEL--HSH---CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----- 208 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i-~d~~~~--~~~---~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~----- 208 (337)
.+...+++.+++++. .|.+.. ||--.. +.. ....+.++.+.++|..++++ ..|. + +|....|+
T Consensus 243 ~v~~~~dG~~~~vg~---~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 243 TVNRSPDGDYVAVSS---RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-L-YVSKGTGLTEEDF 316 (398)
T ss_pred eEEEcCCCCEEEEEC---CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-E-EEecCCCCccccc
Confidence 344556676777654 455443 443211 111 12678999999999877655 6676 4 67666665
Q ss_pred eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
...+.........++++.|.+++. +.+++..|.+....
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~ 354 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST 354 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC
Confidence 233333222233589999999887 56666778776653
No 461
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=71.66 E-value=39 Score=34.15 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=55.9
Q ss_pred EEccCCccccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-cceeEEEEEeecCCCcccEEEEE
Q 019672 164 YNVMELHSHCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-YPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 164 ~d~~~~~~~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-~~~~i~~l~fs~dg~~~~~las~ 240 (337)
||..-....+. .||...++..| ++-|+++|. +.|+...+......+.... +...|+++..+..|- +++-+
T Consensus 614 wd~ep~~~~~~g~lPvrsla~~ed---~~was~gG~-V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gV---wvafa 686 (925)
T KOG3522|consen 614 WDGEPNISIPTGSLPVRSLAFQED---FVWASEGGC-VHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGV---WVAFA 686 (925)
T ss_pred CCCCCccccccCCccccchhhhhc---eeeeecCCc-eEEEechhccccchhHHHHhhcceEEEEEeeCCce---EEEEc
Confidence 77764333333 88999998876 445677887 5788887766555443211 234699999998887 77776
Q ss_pred eCCCcEEEEecCCCcc
Q 019672 241 SSSGSLHVFSPGFAIN 256 (337)
Q Consensus 241 s~dg~v~iw~l~~~~~ 256 (337)
+.| +++.+..++-.+
T Consensus 687 sG~-~~rlfhtetl~h 701 (925)
T KOG3522|consen 687 SGD-EERLFHTETLWH 701 (925)
T ss_pred CCC-EEEEecccccCC
Confidence 665 566666555443
No 462
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.19 E-value=84 Score=28.80 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=34.6
Q ss_pred CceEEEEeCCCCCEEEEEeCC-------------------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672 175 APLAAIVLSSNGMYIATASEQ-------------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~d-------------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~ 235 (337)
...+.++|.|||.+.++-+.. |.+ .-+|..+++ +..+..+. .....++|+|+|+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i-~r~~pdg~~-~e~~a~G~--rnp~Gl~~d~~G~--- 196 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL-FRYNPDGGK-LRVVAHGF--QNPYGHSVDSWGD--- 196 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE-EEEecCCCe-EEEEecCc--CCCccceECCCCC---
Confidence 447789999999976655421 222 233443332 22332222 1246799999998
Q ss_pred EEEEEe
Q 019672 236 ILVATS 241 (337)
Q Consensus 236 ~las~s 241 (337)
++++-.
T Consensus 197 l~~tdn 202 (367)
T TIGR02604 197 VFFCDN 202 (367)
T ss_pred EEEEcc
Confidence 665543
No 463
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=71.07 E-value=88 Score=28.93 Aligned_cols=195 Identities=12% Similarity=0.054 Sum_probs=83.9
Q ss_pred eCCCCcEEEEEeeCCEEEE-------EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcC-
Q 019672 34 DSSTGRLCYERAVGAFSIV-------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNK- 104 (337)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~- 104 (337)
|.++|..+..+......+- ++..+++.+++.+.- -....+.+.|+.+++....-..+. ......+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~----dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF----DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T----TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc----CCCcceEEEEcccCEEEECccCCCCCccceEEecC
Confidence 6777766555443222221 233356677776652 125678888999987655444332 122222333
Q ss_pred -CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC--------------------CCCccEEE
Q 019672 105 -KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA--------------------STTKGSVL 162 (337)
Q Consensus 105 -~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--------------------~~~dg~v~ 162 (337)
+.++-.. ...++-.|+.+++....+..+..-.+.-.+..+.++..++..- ..-...|.
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 2232233 4588888998887654555444444434444455555544221 00134455
Q ss_pred EEEccCCccc--cc--CceEEEEeCCCCCEEEEEeCCCc---E-EEEEEcCC-CceeEeeccCCcceeEEEEEeecCCC
Q 019672 163 VYNVMELHSH--CE--APLAAIVLSSNGMYIATASEQGT---I-IRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQ 232 (337)
Q Consensus 163 i~d~~~~~~~--~~--~~i~~~~~s~dg~~lat~s~dg~---~-i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~ 232 (337)
-.|+.+++.. +. ..+..+.|||....+++=|..|- + -|||-+.+ |.....+.+......+.-=-|+|||.
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 5677766532 22 66789999996555554443331 0 26786643 44444443322222244446788887
No 464
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.99 E-value=12 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=16.4
Q ss_pred eEEEEEeecCCCcccEEEEEe-CC--CcEEEE
Q 019672 221 TIFSLSFGQSMQFQDILVATS-SS--GSLHVF 249 (337)
Q Consensus 221 ~i~~l~fs~dg~~~~~las~s-~d--g~v~iw 249 (337)
.-...+|||||+ +|+-.+ .+ |.-.||
T Consensus 10 ~~~~p~~SpDGk---~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGK---YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSS---EEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCC---EEEEEecCCCCCCcCEE
Confidence 356679999999 555444 44 566665
No 465
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=70.84 E-value=35 Score=34.52 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=48.0
Q ss_pred eEEEEeC----CCCCE--EEEEeCCCcEEEEEEcCCCc-----eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672 177 LAAIVLS----SNGMY--IATASEQGTIIRVFLVSEAT-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 245 (337)
Q Consensus 177 i~~~~~s----~dg~~--lat~s~dg~~i~vwd~~~~~-----~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~ 245 (337)
.+.|+.+ +|+++ |..|+++|++.|+-.+.+.. .+.++..-.+..+|..|..++..+ .|.+|+..|.
T Consensus 410 ~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~---~LyVgs~~gV 486 (737)
T KOG3611|consen 410 LTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRG---SLYVGSRSGV 486 (737)
T ss_pred EEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCC---eEEEEccCcE
Confidence 4556665 55664 66799999988877665521 344443222346799999999888 8999999986
Q ss_pred EEE
Q 019672 246 LHV 248 (337)
Q Consensus 246 v~i 248 (337)
++|
T Consensus 487 ~qv 489 (737)
T KOG3611|consen 487 VQV 489 (737)
T ss_pred EEe
Confidence 665
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.11 E-value=91 Score=29.47 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=51.5
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee--ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672 174 EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF--RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 251 (337)
Q Consensus 174 ~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~--~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l 251 (337)
+++|.++.||+|.+.||.-=.|.+ |.+++....+....+ +.......|....|+..- -+|--++.| +.+|.+
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~----e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST----EIAFITDQG-IEFYQV 139 (657)
T ss_pred CCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCcceeEEEEEecCe----eEEEEecCC-eEEEEE
Confidence 389999999999999999888876 688887433322211 111223458888998664 466666555 677776
Q ss_pred CCCcc
Q 019672 252 GFAIN 256 (337)
Q Consensus 252 ~~~~~ 256 (337)
...++
T Consensus 140 ~pekr 144 (657)
T KOG2377|consen 140 LPEKR 144 (657)
T ss_pred chhhh
Confidence 55443
No 467
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=69.02 E-value=1.2e+02 Score=29.80 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCc-------eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCC-CCCCCceEEEEECCCCCEE
Q 019672 18 DNSGFALSTKDG-------FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQ-PSLSPRRLCLFNTTTGTAL 88 (337)
Q Consensus 18 dg~~la~g~~~g-------~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~-~~~~d~~v~iwd~~~~~~~ 88 (337)
.+.++++|+.+. +..||..+++-...... ..-....+..-.+.+..+|| .. ....-+++..||..+++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG-~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGG-YDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEcc-ccCCCcccceEEEecCCCCcee
Confidence 355667776542 46788776632211110 11111122222344444444 33 2333478999999988755
Q ss_pred EEEEcCC--ceeEEEEcCCeEEEEE--CC-----eEEEEECCCCee--eeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672 89 RELNFLT--SILAVRLNKKRLVIVL--RE-----KTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (337)
Q Consensus 89 ~~~~~~~--~v~~i~~~~~~~~v~~--d~-----~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (337)
.--.... .-.++..-.+.+++++ ++ ++..||..+.+- +..+.. .....+...- ++.+.+.+|...
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~-~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVL-GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEE-CCEEEEEcCcCC
Confidence 4222222 1122333344555444 32 588888866421 111111 1122222222 345666666311
Q ss_pred -c---cEEEEEEccCCcccc-----c--CceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCCCceeEeeccCCcceeE
Q 019672 158 -K---GSVLVYNVMELHSHC-----E--APLAAIVLSSNGMYIATASEQGT----IIRVFLVSEATKSYSFRRGTYPSTI 222 (337)
Q Consensus 158 -d---g~v~i~d~~~~~~~~-----~--~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~~~~~~~~~~~~~~~~i 222 (337)
. .+|..||..+.+-.. + ...... .-++...|.|+.||. .+..+|.++.+-...-.-......+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 1 467888887654221 1 222222 236778888887762 1456887766532211000111112
Q ss_pred EEEEeecCCCcccEEEEEeCCC-----cEEEEecC
Q 019672 223 FSLSFGQSMQFQDILVATSSSG-----SLHVFSPG 252 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg-----~v~iw~l~ 252 (337)
-.+. -+++ ..++|+.|| +|..||..
T Consensus 517 g~~~--~~~~---ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 517 GVVV--LGGK---LYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred cEEE--ECCE---EEEEecccCccccceeEEcCCC
Confidence 2122 2466 788888875 45566543
No 468
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.08 E-value=14 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=17.6
Q ss_pred EEEEEeCCCcEEEEEEcCCCceeEee
Q 019672 188 YIATASEQGTIIRVFLVSEATKSYSF 213 (337)
Q Consensus 188 ~lat~s~dg~~i~vwd~~~~~~~~~~ 213 (337)
.+..++.+|. +..+|..+|+.+.++
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence 4666777776 568888888776543
No 469
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=67.92 E-value=90 Score=27.87 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=47.7
Q ss_pred ccEEEEEEccCCcccc---c---CceEEEEeCC------CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee----
Q 019672 158 KGSVLVYNVMELHSHC---E---APLAAIVLSS------NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST---- 221 (337)
Q Consensus 158 dg~v~i~d~~~~~~~~---~---~~i~~~~~s~------dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~---- 221 (337)
-|.|-+||+.-.-..+ . ..-..|+..| .|.+|+---.||+ |..||..+|+.+-.+.... ..+
T Consensus 221 ~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~-G~pi~i~ 298 (336)
T TIGR03118 221 LGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPD-NHPVKVD 298 (336)
T ss_pred cceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCce-eEEecCCCCceeeeecCCC-CCeEEec
Confidence 5789999986432221 1 4455666644 6778887778998 7999999999887775432 222
Q ss_pred -EEEEEeec
Q 019672 222 -IFSLSFGQ 229 (337)
Q Consensus 222 -i~~l~fs~ 229 (337)
++.|+|..
T Consensus 299 GLWgL~fGn 307 (336)
T TIGR03118 299 GLWSLTFGN 307 (336)
T ss_pred CeEEeeeCC
Confidence 67888875
No 470
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.47 E-value=23 Score=25.21 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=28.5
Q ss_pred CccEEEEEEccCCccc--cc--CceEEEEeCCCCCEEEEEe-CCCcEEEEE
Q 019672 157 TKGSVLVYNVMELHSH--CE--APLAAIVLSSNGMYIATAS-EQGTIIRVF 202 (337)
Q Consensus 157 ~dg~v~i~d~~~~~~~--~~--~~i~~~~~s~dg~~lat~s-~dg~~i~vw 202 (337)
.+|.+.-||..+++.. .. .--+.|+++||+.+++.+- ...++.|.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 3677888888876532 11 6789999999999766553 233444444
No 471
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=66.74 E-value=17 Score=19.35 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=16.9
Q ss_pred EEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672 223 FSLSFGQSMQFQDILVATSSSGSLHVF 249 (337)
Q Consensus 223 ~~l~fs~dg~~~~~las~s~dg~v~iw 249 (337)
..|+.+++|. ++++=+....|++|
T Consensus 5 ~gvav~~~g~---i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGN---IYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSE---EEEEECCCTEEEEE
T ss_pred cEEEEeCCCC---EEEEECCCCEEEEC
Confidence 5677778887 67766666677664
No 472
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=65.35 E-value=1.2e+02 Score=28.39 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=79.5
Q ss_pred ceEEEEECCCCCEEEEEE---cCCceeEEEEcCCeEEEEE---CCeEEEEECCCC---eeeeeecCCCCCceEEEEeeCC
Q 019672 75 RRLCLFNTTTGTALRELN---FLTSILAVRLNKKRLVIVL---REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 75 ~~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
+.|.|.|- ....+..++ ..+.|.++.|.++...+++ -+-+.+-|+.+. +.+..+..+. ...-+++-+
T Consensus 406 N~vYilDe-~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPG---fS~YLHpig 481 (603)
T COG4880 406 NAVYILDE-NLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPG---FSEYLHPIG 481 (603)
T ss_pred ceeEEEcC-CCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCC---chhhccccC
Confidence 34555553 233444443 3458999999999888877 346788888665 4455554432 223345666
Q ss_pred CccEEEEcCCCCccEE--EEEEccCCccccc----------Cc----eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672 146 NACFLAVPASTTKGSV--LVYNVMELHSHCE----------AP----LAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 209 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v--~i~d~~~~~~~~~----------~~----i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~ 209 (337)
++.++-.+.. +|.| .+||+.......+ ++ -.+..++|....+.--...|. .|+-++.|-+
T Consensus 482 en~~lGvG~~--~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~k 557 (603)
T COG4880 482 ENRLLGVGAY--QGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSK 557 (603)
T ss_pred CCcEEEeecc--cCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCce
Confidence 7777777653 5555 5688876543322 22 234445555443333333333 2677777754
Q ss_pred eEeeccCCcceeEEEEEeecCC
Q 019672 210 SYSFRRGTYPSTIFSLSFGQSM 231 (337)
Q Consensus 210 ~~~~~~~~~~~~i~~l~fs~dg 231 (337)
+.. +..+.......-|-.|-
T Consensus 558 l~k--~~e~k~na~RA~fi~dy 577 (603)
T COG4880 558 LRK--RAERKLNADRAFFIKDY 577 (603)
T ss_pred eee--hhhhcccceeeEEecce
Confidence 432 22223333444455553
No 473
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=64.58 E-value=81 Score=34.73 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672 78 CLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (337)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 154 (337)
+++++.....-...-+.+.-..+.-....-.+.. ++.|.+= -.....-..+....+..-+..+..++++..+-.
T Consensus 303 ~L~~l~q~d~~~~~l~sS~~~~~~~~~~~~sv~l~~~~~~i~~~-~~~~~~~~~~PgkaH~A~LTgv~~~~~ge~lRl-- 379 (1774)
T PF11725_consen 303 HLFHLQQDDSSLSVLHSSKPTQAPSGSKPPSVRLERDDGHIHID-TGVNRKALNLPGKAHIAHLTGVHTDPDGEQLRL-- 379 (1774)
T ss_pred cEEEEEecCCceEEEecCCcccCCCCCCCCceeeeccCCcEEec-cCCCccccCCCcHHHHHHhhccccCCCCCeEEe--
Q ss_pred CCCccEEEEEEccCCccc---cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672 155 STTKGSVLVYNVMELHSH---CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 229 (337)
Q Consensus 155 ~~~dg~v~i~d~~~~~~~---~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~ 229 (337)
.++.++.||.....-. .. .+++.+.-.-||+..| .++.. |-|+..+.....+-.+ |.+...++
T Consensus 380 --Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~~--l~nLSs~~~~~~~v~~-----l~sfSv~~ 447 (1774)
T PF11725_consen 380 --HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDDT--LVNLSSGQMSEAEVDK-----LKSFSVAP 447 (1774)
T ss_pred --ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCCc--eeecCCCCcchhhhhh-----cccccccC
Q ss_pred CCCcccE-EEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672 230 SMQFQDI-LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY 308 (337)
Q Consensus 230 dg~~~~~-las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 308 (337)
+|+ . +.++.+..++++|++....-... ....-.-..+.+.. .+-..+..+++|++...+|.
T Consensus 448 ~g~---vA~L~~~d~q~~qL~~m~~~~a~~~-------------p~~~~~L~L~dG~a--~A~~VgLs~drLFvADseGk 509 (1774)
T PF11725_consen 448 DGT---VAMLTGKDGQTLQLHDMSPVDAPPT-------------PRKTKTLQLADGKA--QAQSVGLSNDRLFVADSEGK 509 (1774)
T ss_pred CCc---eeeeecCCCcceeeeccCccccccC-------------ccceeeeeccCCch--hhhheeecCCeEEEEeCCCC
Q ss_pred EEEEEEecCCCCeeceEEeee
Q 019672 309 FVEYIFSINNCCESTWTLDRE 329 (337)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~ 329 (337)
++.=.+......+..+.+..+
T Consensus 510 LYsa~l~~~~~~~~~l~~~p~ 530 (1774)
T PF11725_consen 510 LYSADLPAAQDNEPKLKLMPE 530 (1774)
T ss_pred EEecccccccCCCcceEeccc
No 474
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=61.02 E-value=2.4e+02 Score=30.28 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=84.0
Q ss_pred eEEEEECCCCCEEEEEEcCC--ceeEEEE---c--------CCeEEEEE----------CCeEEEEECCC-----Ce---
Q 019672 76 RLCLFNTTTGTALRELNFLT--SILAVRL---N--------KKRLVIVL----------REKTYIYDANT-----LA--- 124 (337)
Q Consensus 76 ~v~iwd~~~~~~~~~~~~~~--~v~~i~~---~--------~~~~~v~~----------d~~i~i~d~~~-----~~--- 124 (337)
.|.+-+.++.+.+-.+++.. .|..++. . +.++++++ .|.++|||+-. ++
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence 45565666655555555543 3444432 1 12344443 36899999732 21
Q ss_pred --eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccccCceEEEEeCC----------CCCEEEEE
Q 019672 125 --ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSS----------NGMYIATA 192 (337)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~~~i~~~~~s~----------dg~~lat~ 192 (337)
.++.+........+.+++. -+| +++++. ...|.||++... +.+..++|-. -+++|..|
T Consensus 1085 ~~KlKel~~eE~KGtVsavce-V~G-~l~~~~---GqKI~v~~l~r~-----~~ligVaFiD~~~yv~s~~~vknlIl~g 1154 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQ---GQKIIVRKLDRD-----SELIGVAFIDLPLYVHSMKVVKNLILAG 1154 (1366)
T ss_pred cceeeeeehhhcccceEEEEE-ecc-EEEEcc---CcEEEEEEeccC-----CcceeeEEeccceeEEehhhhhhheehh
Confidence 1222211111223344443 234 444443 367999999543 3444555522 23333333
Q ss_pred eCCCcEEEEEEcC-CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 193 SEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 193 s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
.--.. |.+.-.+ .+..+.-+.+....-.++++.|--||. --.++++..|+.||+|-...
T Consensus 1155 DV~ks-isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~-~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1155 DVMKS-ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS-NLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred hhhhc-eEEEEEccCceEEEEeecCCchhhceeeeeEEcCC-eeEEEEEcCCCcEEEEEeCC
Confidence 32222 2222221 233344444444444588888876665 12688889999999997653
No 475
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.99 E-value=28 Score=19.93 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEeCCCcEEEEEEcCCCceeEeeccC
Q 019672 189 IATASEQGTIIRVFLVSEATKSYSFRRG 216 (337)
Q Consensus 189 lat~s~dg~~i~vwd~~~~~~~~~~~~~ 216 (337)
+..++.+|. +.-.|.++|+.+.++..+
T Consensus 3 v~~~~~~g~-l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGY-LYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSE-EEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCE-EEEEECCCCCEEEeeeCC
Confidence 455588887 578999999998887644
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.82 E-value=69 Score=30.24 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=28.2
Q ss_pred ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672 219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252 (337)
Q Consensus 219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~ 252 (337)
+++|.++.||+|.+ .||+--.+++|.+++..
T Consensus 66 ~G~I~SIkFSlDnk---ilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK---ILAVQRTSKTVDFCNFI 96 (657)
T ss_pred CCceeEEEeccCcc---eEEEEecCceEEEEecC
Confidence 45799999999999 99999999999999973
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=60.25 E-value=37 Score=34.19 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=19.4
Q ss_pred CceEEEEECCCCCEEEEEEcC-CceeEEEEcCCe
Q 019672 74 PRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR 106 (337)
Q Consensus 74 d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~ 106 (337)
.+.|++|-.++-..-...+.. ..+.-++|+|..
T Consensus 315 ~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 315 GNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred cceEEEEEccceEEEEEEeecCCCcceeeecccc
Confidence 479999987665443332222 245567887653
No 478
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=59.57 E-value=1.4e+02 Score=27.29 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=55.3
Q ss_pred ceeEEEEcCCeEEEEECCeEEEE-ECCCC-----e--ee-eeecCCC--CCceEEEEeeCCCccEEEEcCCCC-------
Q 019672 96 SILAVRLNKKRLVIVLREKTYIY-DANTL-----A--IL-DTIDTVP--NLKGLCAFSPSLNACFLAVPASTT------- 157 (337)
Q Consensus 96 ~v~~i~~~~~~~~v~~d~~i~i~-d~~~~-----~--~~-~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~------- 157 (337)
....+.+.+++++++....|..| |.... + .+ ..+.... .......+...|++.+.++.+...
T Consensus 73 ~p~Gi~~~~~GlyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 73 MVTGLAVAVGGVYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred CccceeEecCCEEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 45778887777777666666655 44211 1 11 1122110 112344566677776655544210
Q ss_pred ----------ccEEEEEEccCCccc--cc--CceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672 158 ----------KGSVLVYNVMELHSH--CE--APLAAIVLSSNGMYIATASEQGTIIRV 201 (337)
Q Consensus 158 ----------dg~v~i~d~~~~~~~--~~--~~i~~~~~s~dg~~lat~s~dg~~i~v 201 (337)
.|.|.-+|....+.. .. .....++|+|+|+++++-..++...++
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPPLCRV 210 (367)
T ss_pred CCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCceeEE
Confidence 144555555443321 11 335689999999988775544433333
No 479
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=58.95 E-value=1.4e+02 Score=26.90 Aligned_cols=103 Identities=8% Similarity=0.066 Sum_probs=0.0
Q ss_pred EEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEE
Q 019672 116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIAT 191 (337)
Q Consensus 116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat 191 (337)
.+.|+.+++.+.+=-.-++...- .++.+.++-+. .|+|.-+|..+++...- +....++|. |.+++.
T Consensus 188 ~vidv~s~evl~~GLsmPhSPRW------hdgrLwvldsg--tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvV 257 (335)
T TIGR03032 188 CVIDIPSGEVVASGLSMPHSPRW------YQGKLWLLNSG--RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFV 257 (335)
T ss_pred EEEEeCCCCEEEcCccCCcCCcE------eCCeEEEEECC--CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEE
Q ss_pred EeCC---------------------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672 192 ASEQ---------------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 230 (337)
Q Consensus 192 ~s~d---------------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d 230 (337)
|-+. | +.|.|+++|..+.-++....-.+|++++.-|.
T Consensus 258 gmSk~R~~~~f~glpl~~~l~~~~CG--v~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 258 GLSKLRESRVFGGLPIEERLDALGCG--VAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EeccccCCCCcCCCchhhhhhhhccc--EEEEECCCCCEEEEEEeCCceeEEEEEEEecC
No 480
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.33 E-value=84 Score=33.20 Aligned_cols=120 Identities=17% Similarity=0.070 Sum_probs=72.6
Q ss_pred CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCcee--------EeeccCCc-ceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 175 APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKS--------YSFRRGTY-PSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~--------~~~~~~~~-~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
.+|..+...+|++..+... ..|..|..||+++-..- +.-+.... .....++.|.|.=. ...|+...|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhcccc
Confidence 7788888899988655432 33666789999754321 11111111 11256788888755 2677888899
Q ss_pred cEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672 245 SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 317 (337)
Q Consensus 245 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~ 317 (337)
.|++..+........ .+|- ...+.++.+.++++++++|-.+|++.-|....+
T Consensus 179 sl~V~~~~~~~~~v~----------s~p~-----------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVT----------SFPV-----------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred chhhhhhhhhhhhhc----------ccCc-----------ccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 999988765433221 0110 001123334455699999999999999876444
No 481
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.54 E-value=2.5 Score=39.64 Aligned_cols=125 Identities=11% Similarity=0.130 Sum_probs=79.0
Q ss_pred CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCC
Q 019672 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNG 186 (337)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg 186 (337)
+..+..||-. ++..-.+.. +.....++++.++..++.... ..+.+.+||+.+....+ +..-.-+.|++.+
T Consensus 55 ~tiv~~YD~a-gq~~le~n~---tg~aldm~wDkegdvlavlAe-k~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~ 129 (615)
T KOG2247|consen 55 NTIVIYYDKA-GQVILELNP---TGKALDMAWDKEGDVLAVLAE-KTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGT 129 (615)
T ss_pred hhHHHhhhhh-cceecccCC---chhHhhhhhccccchhhhhhh-cCCCeeechhhhhhHHHHhccCcchHHHHhhccCC
Confidence 4556666632 222222221 223345566555555554443 47889999997643221 1222337899999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEE
Q 019672 187 MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV 248 (337)
Q Consensus 187 ~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~i 248 (337)
..++.+-..|. ++|++..+.+.+... |.|...+.++++.+.+. .+.++.|.++.+
T Consensus 130 ~el~ig~~~gn-~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd~----vil~dcd~~L~v 184 (615)
T KOG2247|consen 130 PELVIGNNAGN-IVIYNHGTSRRIIVM--GKHQRRGTQIAVTLEDY----VILCDCDNTLSV 184 (615)
T ss_pred ccccccccccc-eEEEeccchhhhhhh--cccccceeEEEecccce----eeecCcHHHHHH
Confidence 99999988898 589998887766544 33445688899999884 777887765544
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=55.38 E-value=1.8e+02 Score=27.29 Aligned_cols=264 Identities=14% Similarity=0.206 Sum_probs=125.4
Q ss_pred CCCEEEEEcCCce-EEEeCCCCc-----EEEEEee-CCEEEEEEc-c--C--CCEEEEEeCCCCCCCCCceEEEEECCC-
Q 019672 18 DNSGFALSTKDGF-KIFDSSTGR-----LCYERAV-GAFSIVEML-Y--S--SSLLAIVGAGEQPSLSPRRLCLFNTTT- 84 (337)
Q Consensus 18 dg~~la~g~~~g~-~vw~~~~~~-----~~~~~~~-~~~~~~~~~-~--~--~~~~~~~~~g~~~~~~d~~v~iwd~~~- 84 (337)
+...+++|+-.|. +||+..... ++.+.+. .++--++.- | . .+.+++. .++++.||.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL--------hP~kl~vY~v~~~ 107 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL--------HPRKLSVYSVSLV 107 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe--------cCCEEEEEEEEec
Confidence 3357999998885 999875443 4455443 333333321 1 1 1334433 368888888632
Q ss_pred -CC----------EEEEEEcCCceeEEE---E---c-CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672 85 -GT----------ALRELNFLTSILAVR---L---N-KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (337)
Q Consensus 85 -~~----------~~~~~~~~~~v~~i~---~---~-~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
|. .+.+..++.....+. | . ++.+.|-+ ||.+.+|+-+.....+.+...--| +-.++++.-
T Consensus 108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP-gPl~Y~~~t 186 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP-GPLCYCPRT 186 (418)
T ss_pred CCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC-cCeEEeecC
Confidence 11 111122223333332 2 1 24444444 999999996654333333221112 234455444
Q ss_pred CccEEEEcCCCCccEEEEEEccCC--------------------ccccc-------C---ceEEEEeCCCCCEEEEEeCC
Q 019672 146 NACFLAVPASTTKGSVLVYNVMEL--------------------HSHCE-------A---PLAAIVLSSNGMYIATASEQ 195 (337)
Q Consensus 146 ~~~~la~~~~~~dg~v~i~d~~~~--------------------~~~~~-------~---~i~~~~~s~dg~~lat~s~d 195 (337)
| .++++++ +..+.-|..+.. +.... . .|..+.++..-..++.=++.
T Consensus 187 D--sfvt~ss--s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger 262 (418)
T PF14727_consen 187 D--SFVTASS--SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER 262 (418)
T ss_pred C--EEEEecC--ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc
Confidence 4 4444442 456777754211 11110 2 23444444444445555554
Q ss_pred CcEEEEEEcCCCceeEeeccCCccee--EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccc
Q 019672 196 GTIIRVFLVSEATKSYSFRRGTYPST--IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE 273 (337)
Q Consensus 196 g~~i~vwd~~~~~~~~~~~~~~~~~~--i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~ 273 (337)
+ +.+.+- +|+.....+....+.. .+.+....++.....++.++.++++.||.=.+
T Consensus 263 -~-Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-------------------- 319 (418)
T PF14727_consen 263 -S-LFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-------------------- 319 (418)
T ss_pred -e-EEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--------------------
Confidence 2 334443 4654433332221111 22221112221001599999999999996221
Q ss_pred cceeecccccce--eeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672 274 SVNEVLDPADHH--VLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 320 (337)
Q Consensus 274 ~~~~~w~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~ 320 (337)
.+|+..-.. .......+..-...|++-+.||.+.+-=|-++...
T Consensus 320 ---L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 320 ---LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred ---EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 122221110 00001111222467999999999999878766544
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=54.34 E-value=76 Score=22.53 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEE-eCCCcE
Q 019672 194 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSL 246 (337)
Q Consensus 194 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~-s~dg~v 246 (337)
.+|+++ -||..+++...-+. +. .--+.|++|+|+. +++.+ .....|
T Consensus 35 ~~GRll-~ydp~t~~~~vl~~-~L--~fpNGVals~d~~---~vlv~Et~~~Ri 81 (89)
T PF03088_consen 35 PTGRLL-RYDPSTKETTVLLD-GL--YFPNGVALSPDES---FVLVAETGRYRI 81 (89)
T ss_dssp --EEEE-EEETTTTEEEEEEE-EE--SSEEEEEE-TTSS---EEEEEEGGGTEE
T ss_pred CCcCEE-EEECCCCeEEEehh-CC--CccCeEEEcCCCC---EEEEEeccCceE
Confidence 356654 68988876532221 11 1247899999999 54443 444444
No 484
>PHA02790 Kelch-like protein; Provisional
Probab=54.24 E-value=2e+02 Score=27.46 Aligned_cols=178 Identities=7% Similarity=-0.030 Sum_probs=82.4
Q ss_pred CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCc--eeEEEEcCCeEEEEE--C--CeEEEEECCCCeeeeeecCC
Q 019672 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS--ILAVRLNKKRLVIVL--R--EKTYIYDANTLAILDTIDTV 132 (337)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~v~~--d--~~i~i~d~~~~~~~~~~~~~ 132 (337)
+.+.++||... .....++..||..+++....-..+.+ -.++..-.+.+++++ + ..+..||..+.+-. .+..-
T Consensus 272 ~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSL 349 (480)
T ss_pred CEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEE-ECCCC
Confidence 45555554211 11235688899988765432222221 112222345555554 1 36788887654321 11111
Q ss_pred CCCc-eEEEEeeCCCccEEEEcCCCC-ccEEEEEEccCCcccc-----c--CceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672 133 PNLK-GLCAFSPSLNACFLAVPASTT-KGSVLVYNVMELHSHC-----E--APLAAIVLSSNGMYIATASEQGTIIRVFL 203 (337)
Q Consensus 133 ~~~~-~~~~~~~~~~~~~la~~~~~~-dg~v~i~d~~~~~~~~-----~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd 203 (337)
+.+. ...+... ++...+.+|... ...+..||..+.+-.. . .....+ .-+|+..+.|+ . ..+||
T Consensus 350 ~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~-~e~yd 421 (480)
T PHA02790 350 LKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---N-AEFYC 421 (480)
T ss_pred CCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---c-eEEec
Confidence 1121 1222222 345666666421 2457788876543211 1 111222 33566666663 3 35788
Q ss_pred cCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCC
Q 019672 204 VSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGF 253 (337)
Q Consensus 204 ~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~ 253 (337)
..+++=. ..+... +... +++. -+|+ +.+.|+.+ .+|..||..+
T Consensus 422 p~~~~W~~~~~m~~~--r~~~-~~~v-~~~~---IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 422 ESSNTWTLIDDPIYP--RDNP-ELII-VDNK---LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCCcEeEcCCCCCC--cccc-EEEE-ECCE---EEEECCcCCCcccceEEEEECCC
Confidence 8765432 112110 1111 2222 3677 78888754 3566777653
No 485
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=53.92 E-value=25 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 253 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~ 253 (337)
-+.++++|++++ ..++....+.|++|+.++
T Consensus 56 aNGI~~s~~~k~--lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKY--LYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCE--EEEEeccCCeEEEEEecC
Confidence 357899999982 445555668899998753
No 486
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=53.24 E-value=7.1 Score=38.02 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=47.9
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec----------cCCcceeEEEEEeecCCCcccEEEEEeC
Q 019672 173 CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR----------RGTYPSTIFSLSFGQSMQFQDILVATSS 242 (337)
Q Consensus 173 ~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~----------~~~~~~~i~~l~fs~dg~~~~~las~s~ 242 (337)
|+.+|..++|.+.|..+++++-.|..|.++.+ .+.+.+.. ++...+.|..++|+...+ +.+.+|.
T Consensus 314 hkspiSaLcfdqsgsllViasi~g~nVnvfRi--met~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~---~r~~gsc 388 (788)
T KOG2109|consen 314 HKSPISALCFDQSGSLLVIASITGRNVNVFRI--METVCTVNVSDQSLVVSPRANTAAVIQDICFSEVST---IRTAGSC 388 (788)
T ss_pred ecCcccccccccCceEEEEEeeccceeeeEEe--ccccccccccccccccchhcchHHHHHHHhhhhhcc---eEeeccc
Confidence 55999999999999999999999975544443 33222211 122223366788999988 9999998
Q ss_pred CCc
Q 019672 243 SGS 245 (337)
Q Consensus 243 dg~ 245 (337)
+|.
T Consensus 389 ~Ge 391 (788)
T KOG2109|consen 389 EGE 391 (788)
T ss_pred CCC
Confidence 874
No 487
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=52.92 E-value=2.5e+02 Score=29.22 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=76.9
Q ss_pred CeEEEEECCeEEEEECCCCeeeeeecCCCCCc-eEEEEeeCCC------ccEEEEcCCCCccEEEEEEc----cCCc---
Q 019672 105 KRLVIVLREKTYIYDANTLAILDTIDTVPNLK-GLCAFSPSLN------ACFLAVPASTTKGSVLVYNV----MELH--- 170 (337)
Q Consensus 105 ~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~la~~~~~~dg~v~i~d~----~~~~--- 170 (337)
++..+..|+++.+||+.++...+.+..-.+.. .+.-+.|.|+ .++|+.+. ...+.++-+ +++.
T Consensus 94 nrcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT---~~e~~ilgvs~d~~T~Els~ 170 (1263)
T COG5308 94 NRCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVAT---EKEVMILGVSKDTKTGELSL 170 (1263)
T ss_pred cceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhh---hheeeEEEEEeccccceeEE
Confidence 44555568889999988765555554333321 1222233332 11222221 233444322 2221
Q ss_pred -------ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC--------c--e-----------eEe-eccCCccee
Q 019672 171 -------SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA--------T--K-----------SYS-FRRGTYPST 221 (337)
Q Consensus 171 -------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~--------~--~-----------~~~-~~~~~~~~~ 221 (337)
.++...|.|+.-+.+|+.+.+|-.| ..||.+.-. + + +.+ +..+.+...
T Consensus 171 fnTgl~vsvqGinV~civs~e~GrIFf~g~~d---~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipget 247 (1263)
T COG5308 171 FNTGLVVSVQGINVRCIVSEEDGRIFFGGEND---PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGET 247 (1263)
T ss_pred EecceEEeccCceeEEEEeccCCcEEEecCCC---CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccc
Confidence 1222668899888899998888777 246765311 0 0 011 111222334
Q ss_pred EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 255 (337)
Q Consensus 222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~ 255 (337)
|..++...... .|-+-+...+|+-|.+.+..
T Consensus 248 I~Ql~vDqsRg---~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 248 IKQLAVDQSRG---LLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred hhheeeccccc---ceeeecccceeeeEeeeccc
Confidence 77777776555 78888888889999886544
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=52.52 E-value=2.1e+02 Score=27.19 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=35.3
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeecc---CCcceeEEEEEeecCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRR---GTYPSTIFSLSFGQSM 231 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~---~~~~~~i~~l~fs~dg 231 (337)
.....|+|.|||++|++--..|+ |++++-.++.. +..+.. .....-...|+|+|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45678999999988877554687 57777655432 222210 0112347899999884
No 489
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=52.16 E-value=2.2e+02 Score=27.30 Aligned_cols=228 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCCCCCCCceEEEEECCCCC---EEEEEEc-CCceeEEEEcCCe--EEEEE----CCeEEEEECCCCeee
Q 019672 57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELNF-LTSILAVRLNKKR--LVIVL----REKTYIYDANTLAIL 126 (337)
Q Consensus 57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~---~~~~~~~-~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~~~ 126 (337)
+...+.+..- +|.+..-.+.... .+..+.. .....++.+-.++ +++++ |+.+.-+.....+.+
T Consensus 221 ~~~~~lL~~e-------~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~ 293 (504)
T PF10433_consen 221 DGDRILLQDE-------DGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVL 293 (504)
T ss_dssp TSSEEEEEET-------TSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEE
T ss_pred CCCEEEEEeC-------CCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEE
Q ss_pred eeecCCCCCceEEEEee--CCCc------cEEEEcCCCCccEEEEEEccCCcc--ccc-------CceEEEEeCC-CCCE
Q 019672 127 DTIDTVPNLKGLCAFSP--SLNA------CFLAVPASTTKGSVLVYNVMELHS--HCE-------APLAAIVLSS-NGMY 188 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~------~~la~~~~~~dg~v~i~d~~~~~~--~~~-------~~i~~~~~s~-dg~~ 188 (337)
..+.........+.... .... ..++++|...+|.+++..---.-. ... ..++.+.... ++.+
T Consensus 294 ~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 294 DSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSY 373 (504)
T ss_dssp EEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSE
T ss_pred EeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceE
Q ss_pred EEEEeCCCcEEEEEEc---CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccc
Q 019672 189 IATASEQGTIIRVFLV---SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS 265 (337)
Q Consensus 189 lat~s~dg~~i~vwd~---~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~ 265 (337)
|+.+..+.+ +|+.+ ...+.+.++....-......++...=+. -.+.-=....|++.+....+...
T Consensus 374 lv~S~~~~T--~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~---~~ivQVt~~~i~l~~~~~~~~~~------- 441 (504)
T PF10433_consen 374 LVLSFPNET--RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGD---GRIVQVTPKGIRLIDLEDGKLTQ------- 441 (504)
T ss_dssp EEEEESSEE--EEEEES----SSEEEEE---TS-SSS-EEEEEEETT---TEEEEEESSEEEEEESSSTSEEE-------
T ss_pred EEEEcCCce--EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCC---CeEEEEecCeEEEEECCCCeEEE-------
Q ss_pred cccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672 266 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 318 (337)
Q Consensus 266 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~ 318 (337)
.|.+..+..+..+...+ +++++...+|.+..|.++...
T Consensus 442 ------------~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~~~ 479 (504)
T PF10433_consen 442 ------------EWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDDNK 479 (504)
T ss_dssp ------------EEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEETTE
T ss_pred ------------EEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEECCc
No 490
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=51.89 E-value=1.7e+02 Score=25.84 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=62.3
Q ss_pred EEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee-Ee
Q 019672 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS-YS 212 (337)
Q Consensus 139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~-~~ 212 (337)
..+++++|+..-.+.. ..|.|--.|..+++.... ..-..|...|||..-++=+..+ |.-.|-++.+.. ..
T Consensus 65 ~dvapapdG~VWft~q--g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~a--I~R~dpkt~evt~f~ 140 (353)
T COG4257 65 FDVAPAPDGAVWFTAQ--GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLA--IGRLDPKTLEVTRFP 140 (353)
T ss_pred cccccCCCCceEEecC--ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcce--eEEecCcccceEEee
Confidence 3446666665554443 244455555555554321 4456778899998766644332 445666665432 22
Q ss_pred eccCCcceeEEEEEeecCCCcccEEEEEeCC---------CcEEEEecCCC
Q 019672 213 FRRGTYPSTIFSLSFGQSMQFQDILVATSSS---------GSLHVFSPGFA 254 (337)
Q Consensus 213 ~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---------g~v~iw~l~~~ 254 (337)
+...+..+......|.+.|. +-.++..- +.|++|+...+
T Consensus 141 lp~~~a~~nlet~vfD~~G~---lWFt~q~G~yGrLdPa~~~i~vfpaPqG 188 (353)
T COG4257 141 LPLEHADANLETAVFDPWGN---LWFTGQIGAYGRLDPARNVISVFPAPQG 188 (353)
T ss_pred cccccCCCcccceeeCCCcc---EEEeeccccceecCcccCceeeeccCCC
Confidence 22222334578889999998 77776532 45667765543
No 491
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.13 E-value=2.4e+02 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCceEEEe
Q 019672 9 PVFFVSFNQDNSGFALSTKDGFKIFD 34 (337)
Q Consensus 9 ~v~~~~fs~dg~~la~g~~~g~~vw~ 34 (337)
+|.-+..|+.|+.++-.+.+|+.|-.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 47778889999998888888875443
No 492
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=51.00 E-value=12 Score=36.50 Aligned_cols=76 Identities=18% Similarity=0.311 Sum_probs=56.0
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEE--------EEEc-CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672 174 EAPLAAIVLSSNGMYIATASEQGTIIR--------VFLV-SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 244 (337)
Q Consensus 174 ~~~i~~~~~s~dg~~lat~s~dg~~i~--------vwd~-~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg 244 (337)
..++..+.|+|+++.+.++...++... .|+. +.-+.++++.+|...+.|..++|+.|.. ++|.....+
T Consensus 492 s~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsr---w~A~~t~~~ 568 (788)
T KOG2109|consen 492 SDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSR---WLAITTNHA 568 (788)
T ss_pred cCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchh---hhhhhhcCC
Confidence 367788999999999988876655322 3432 2223456666777777899999999999 999888888
Q ss_pred cEEEEecC
Q 019672 245 SLHVFSPG 252 (337)
Q Consensus 245 ~v~iw~l~ 252 (337)
|=+|+.+.
T Consensus 569 TthVfk~h 576 (788)
T KOG2109|consen 569 TTHVFKVH 576 (788)
T ss_pred ceeeeeec
Confidence 88888753
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=50.64 E-value=1.8e+02 Score=25.85 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=48.3
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee--EE--EEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST--IF--SLSFGQSMQFQDILVATSSSGSLHVFS 250 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~--i~--~l~fs~dg~~~~~las~s~dg~v~iw~ 250 (337)
--|++|...++|.+|+++=.-.+ |.+.|-++|+.+..+. |..... +. ..++=.|-+ ++-.+..+++|.|||
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lg-G~~~~df~~~~~~f~~QHdar---~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLG-GKRNSDFTLPATNFSWQHDAR---FLNESNDDGTISLFD 218 (299)
T ss_pred cEeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeC-CCCCCcccccCCcEeeccCCE---EeccCCCCCEEEEEc
Confidence 45888999999999988765554 5678888898888773 221110 11 133435555 666667888999998
Q ss_pred c
Q 019672 251 P 251 (337)
Q Consensus 251 l 251 (337)
=
T Consensus 219 N 219 (299)
T PF14269_consen 219 N 219 (299)
T ss_pred C
Confidence 4
No 494
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=50.09 E-value=43 Score=32.46 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=19.7
Q ss_pred EeeccCCcceeEEEEEeecCCCcccEEEEE
Q 019672 211 YSFRRGTYPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~ 240 (337)
.+|-.+...++++.++|+||++ .|...
T Consensus 493 ~rf~~~P~gaE~tG~~fspDg~---tlFvn 519 (524)
T PF05787_consen 493 KRFLVGPNGAEITGPCFSPDGR---TLFVN 519 (524)
T ss_pred eeeccCCCCcccccceECCCCC---EEEEE
Confidence 3444455567899999999999 76653
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=48.98 E-value=2.4e+02 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=26.3
Q ss_pred EEeeCCCccEEEEcCCCCccEEEEEEccCCcc--c----------ccCceEEEEeCCCC
Q 019672 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHS--H----------CEAPLAAIVLSSNG 186 (337)
Q Consensus 140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~----------~~~~i~~~~~s~dg 186 (337)
++.+.|++.++++.- ..|.|++++..+... . .+.....|+|+|+-
T Consensus 34 ~maflPDG~llVtER--~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 34 ALLWGPDNQLWVTER--ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEEcCCCeEEEEEe--cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 334455666666543 147788776543321 0 12567889999884
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=48.01 E-value=99 Score=29.62 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=19.4
Q ss_pred eEEEEEeec-CCCcccEEEEEeCCCcEEEEecCCC
Q 019672 221 TIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPGFA 254 (337)
Q Consensus 221 ~i~~l~fs~-dg~~~~~las~s~dg~v~iw~l~~~ 254 (337)
.++++.+.+ ++. +|+++-.-..|-..|.+++
T Consensus 272 H~Nsi~yd~~dd~---iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 272 HINSIDYDPSDDS---IIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp -EEEEEEETTTTE---EEEEETTT-EEEEEE-TTS
T ss_pred ccCccEEeCCCCe---EEEEcCcceEEEEEECCCC
Confidence 489999998 554 6666555557777774443
No 497
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.62 E-value=2.1e+02 Score=25.43 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=87.8
Q ss_pred EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE---CCeEEEEECCCC
Q 019672 49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL---REKTYIYDANTL 123 (337)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~---d~~i~i~d~~~~ 123 (337)
+..+.+.++.+.+..+.. ...-.||=..+|+.+.++.... ..-.|.+-.+..++.. +..+.++.+...
T Consensus 88 vS~LTynp~~rtLFav~n-------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTN-------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccceeeCCCcceEEEecC-------CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445556666677766665 3456666677889888876543 4445666555555554 556777666433
Q ss_pred eee-------eeecCCCC-CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---cc------------cCceEEE
Q 019672 124 AIL-------DTIDTVPN-LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HC------------EAPLAAI 180 (337)
Q Consensus 124 ~~~-------~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---~~------------~~~i~~~ 180 (337)
..+ ..+....+ ..+.-.++.++....+.++- +..-+.||....... .+ -..|.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK--Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK--ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE--ccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 111 11211112 35666778888777777664 455566665543221 11 1668889
Q ss_pred EeCC-CCCEEEEEeCCCcEEEEEEcCCCcee
Q 019672 181 VLSS-NGMYIATASEQGTIIRVFLVSEATKS 210 (337)
Q Consensus 181 ~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~ 210 (337)
.|++ .+.+|+-+.+++.+ --.|.. |..+
T Consensus 239 ~~~~~~~~LLVLS~ESr~l-~Evd~~-G~~~ 267 (316)
T COG3204 239 EFNAITNSLLVLSDESRRL-LEVDLS-GEVI 267 (316)
T ss_pred eecCCCCcEEEEecCCceE-EEEecC-CCee
Confidence 9997 56677777777654 345653 4433
No 498
>PRK13684 Ycf48-like protein; Provisional
Probab=44.83 E-value=2.4e+02 Score=25.50 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.9
Q ss_pred eEEEEeeCCCccEEEEcCCCCccEEEEE-Ecc--CCccc---ccCceEEEEeCCCCCEEEEEeCCCcEEEEE-EcCCCce
Q 019672 137 GLCAFSPSLNACFLAVPASTTKGSVLVY-NVM--ELHSH---CEAPLAAIVLSSNGMYIATASEQGTIIRVF-LVSEATK 209 (337)
Q Consensus 137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~-d~~--~~~~~---~~~~i~~~~~s~dg~~lat~s~dg~~i~vw-d~~~~~~ 209 (337)
.+..+...+++.+++++. .|.+..- |-. +-... ....++++++.|+++.++.| ..|. + +. ....|+.
T Consensus 174 ~~~~i~~~~~g~~v~~g~---~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~-~~~s~d~G~s 247 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS---RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-I-RFNDPDDLES 247 (334)
T ss_pred eEEEEEECCCCeEEEEeC---CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-E-EEccCCCCCc
Confidence 455666677777776654 5655432 211 11111 12678999999999877665 5575 4 34 3444443
Q ss_pred eEeeccC--CcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672 210 SYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLH 247 (337)
Q Consensus 210 ~~~~~~~--~~~~~i~~l~fs~dg~~~~~las~s~dg~v~ 247 (337)
-.....+ .....+.+++|.|++. .++ ++.+|.|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~---~~~-~G~~G~v~ 283 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE---IWA-GGGNGTLL 283 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC---EEE-EcCCCeEE
Confidence 2222111 0113478899999887 544 55677654
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=44.25 E-value=2.7e+02 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.317 Sum_probs=24.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672 175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSE 206 (337)
Q Consensus 175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~ 206 (337)
..|.+++..+..+.|.+.+++|. |++|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~-Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGS-IQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE--EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCc-EEEEEEeC
Confidence 44899999998899999999997 79999974
No 500
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=43.29 E-value=62 Score=31.39 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=37.0
Q ss_pred eEEEEeCCCCCEEEEEeCC-----CcEEEEEEc-----CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEE
Q 019672 177 LAAIVLSSNGMYIATASEQ-----GTIIRVFLV-----SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT 240 (337)
Q Consensus 177 i~~~~~s~dg~~lat~s~d-----g~~i~vwd~-----~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~ 240 (337)
.-.|+|.|.|++.+.-... +...-+|-+ .++ .+++|..+...++++..+||||++ .|.++
T Consensus 502 PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g-~~~rf~t~P~g~E~tG~~FspD~~---TlFV~ 571 (616)
T COG3211 502 PDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTG-TIKRFLTGPIGCEFTGPCFSPDGK---TLFVN 571 (616)
T ss_pred CCceEECCCCCEEEEecCCCCccCcccccccccccCCCccc-eeeeeccCCCcceeecceeCCCCc---eEEEE
Confidence 4568899999976643211 112224422 222 244555565667899999999999 77655
Done!