BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019673
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 149 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 207
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 500 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 559
Query: 208 RLYDLGA 214
YD A
Sbjct: 560 LKYDSDA 566
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 149 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 207
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 501 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 560
Query: 208 RLYDLGA 214
YD A
Sbjct: 561 LKYDSDA 567
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 149 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 207
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 501 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 560
Query: 208 RLYDLGA 214
YD A
Sbjct: 561 LKYDSDA 567
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 149 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 207
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 500 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 559
Query: 208 RLYDLGA 214
YD A
Sbjct: 560 LKYDSDA 566
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 65 PTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPELTGSRLLVGANFAS--AGIGILNDT 122
PT + G I F H+G E T+P+ S E R L+ FA A IGI+
Sbjct: 286 PTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAG 345
Query: 123 GIQFVNII 130
+ V ++
Sbjct: 346 EHKKVQVV 353
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 257 VQLVKDLNSQYGSEIFVAVNTGKMQYNFISNPRAFGMLTNPFFMYGL 303
V + D NS S ++ +NTG++Q + N R FG ++ F + L
Sbjct: 598 VLICGDFNSYINSAVYELINTGRVQIHQEGNGRDFGYMSEKNFSHNL 644
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 119 LNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNG-----ALILITVGG--- 170
+ND G R + + F + + T ++G Q K++V+ +IL+ G
Sbjct: 23 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82
Query: 171 NDFVNNYYLVPYSARSRQFSLPDYVKYVI----SEYRKLLTRLYDLGARRVL 218
+DF+ LVP L D +I SEYR R DL A+ +L
Sbjct: 83 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 123
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 119 LNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNG-----ALILITVGG--- 170
+ND G R + + F + + T ++G Q K++V+ +IL+ G
Sbjct: 44 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 103
Query: 171 NDFVNNYYLVPYSARSRQFSLPDYVKYVI----SEYRKLLTRLYDLGARRVL 218
+DF+ LVP L D +I SEYR R DL A+ +L
Sbjct: 104 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 144
>pdb|4DJM|A Chain A, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|B Chain B, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|C Chain C, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|D Chain D, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|E Chain E, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|F Chain F, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|G Chain G, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|H Chain H, Crystal Structure Of The E. Coli Chaperone Drab
Length = 239
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 98 PELTGSRLLVGANFASAGIGILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQ 157
P G R G + + + + + I++F + + + V + QR
Sbjct: 111 PPKEGDRWAEGKDGEKKADKVSLNVQLSVSSCIKLFVRPPAVKGRPDDVAGKVEWQRAGN 170
Query: 158 LVNGA--------LILITVGGNDFVNNYYLVPYSARSRQFSLP 192
+ G L +TVGG + Y+ P+S SR++ LP
Sbjct: 171 RLKGVNPTPFYINLSTLTVGGKEVKEREYIAPFS--SREYPLP 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,422,228
Number of Sequences: 62578
Number of extensions: 393980
Number of successful extensions: 945
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 16
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)