BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019674
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/322 (59%), Positives = 245/322 (76%), Gaps = 5/322 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 384
Query: 313 ELHRKLGANLEV-LEVLFLQIF 333
E HR+ G N +V + ++L F
Sbjct: 385 EEHRQFGGNCDVDVSFMYLTFF 406
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/322 (59%), Positives = 245/322 (76%), Gaps = 5/322 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 4 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 63
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 64 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 123
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 124 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 183
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVA
Sbjct: 184 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVA 243
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++
Sbjct: 244 PRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 303
Query: 313 ELHRKLGANLEV-LEVLFLQIF 333
E HR+ G N +V + ++L F
Sbjct: 304 EEHRQFGGNCDVDVSFMYLTFF 325
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 185/313 (59%), Positives = 240/313 (76%), Gaps = 3/313 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
L+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G N
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 322 LEV-LEVLFLQIF 333
+V + ++L F
Sbjct: 301 CDVDVSFMYLTFF 313
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 185/313 (59%), Positives = 240/313 (76%), Gaps = 3/313 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
L+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G N
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 322 LEV-LEVLFLQIF 333
+V + ++L F
Sbjct: 301 CDVDVSFMYLTFF 313
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 185/313 (59%), Positives = 240/313 (76%), Gaps = 3/313 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
L+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G N
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 322 LEV-LEVLFLQIF 333
+V + ++L F
Sbjct: 301 CDVDVSFMYLTFF 313
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 234/312 (75%), Gaps = 4/312 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG++++
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 384
Query: 313 ELHRKLGANLEV 324
E HR+ G N +V
Sbjct: 385 EEHRQFGGNCDV 396
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 234/312 (75%), Gaps = 4/312 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG++++
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 384
Query: 313 ELHRKLGANLEV 324
E HR+ G N +V
Sbjct: 385 EEHRQFGGNCDV 396
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 234/312 (75%), Gaps = 4/312 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 38 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 97
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 98 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 157
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 158 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 217
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDVA
Sbjct: 218 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVA 277
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG++++
Sbjct: 278 PRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 337
Query: 313 ELHRKLGANLEV 324
E HR+ G N +V
Sbjct: 338 EEHRQFGGNCDV 349
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 348 bits (892), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 168/309 (54%), Positives = 218/309 (70%), Gaps = 4/309 (1%)
Query: 19 PWEVSSSGK--IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
PWEV + IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD I
Sbjct: 6 PWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKI 65
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
LD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK ++K N
Sbjct: 66 LDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSN 125
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++ IF
Sbjct: 126 LTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI-AELYPDILRIEKKISCSQIKSIF 184
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GF ++GK +FP VQA G+ + CL+P AIDQDPYFRM RDVAPR+
Sbjct: 185 GFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELH 315
GY KP+ I S F P+LQG KMSAS NS+I+V D+ YAFSGGQ + E
Sbjct: 245 GYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQ 304
Query: 316 RKLGANLEV 324
R+LGANL+V
Sbjct: 305 RRLGANLDV 313
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/317 (51%), Positives = 219/317 (69%), Gaps = 8/317 (2%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 247
+ +FGF D IGK F +Q D CLIPCAIDQDPYFR+
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRV 265
Query: 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 307
RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ YAFSG
Sbjct: 266 CRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSG 325
Query: 308 GQESVELHRKLGANLEV 324
GQ S +LHR+LG N +V
Sbjct: 326 GQVSADLHRELGGNPDV 342
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/317 (51%), Positives = 219/317 (69%), Gaps = 8/317 (2%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 247
+ +FGF D IGK F +Q D CLIPCAIDQDPYFR+
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRV 265
Query: 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 307
RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ YAFSG
Sbjct: 266 CRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSG 325
Query: 308 GQESVELHRKLGANLEV 324
GQ S +LHR+LG N +V
Sbjct: 326 GQVSADLHRELGGNPDV 342
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 333 bits (854), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 217/310 (70%), Gaps = 5/310 (1%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+FF+HRDLN
Sbjct: 11 VVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNL 68
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
+LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TDDEK ++N
Sbjct: 69 LLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRN 128
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T ++V G F
Sbjct: 129 IPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFTASQVRGCF 187
Query: 196 GFTGEDHIGKVSFPPVQAVXX-XXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
GF ED+ G+ FP +QA ++ CLIP AIDQDPYFR+TRD+APR
Sbjct: 188 GFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPR 247
Query: 255 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVEL 314
+GY KPA+I S FFP L G GKMS+S +A+ +TD+ +AFSGG + +
Sbjct: 248 LGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVKDKINKHAFSGGGATKQE 306
Query: 315 HRKLGANLEV 324
H LGAN+EV
Sbjct: 307 HFLLGANVEV 316
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/314 (44%), Positives = 206/314 (65%), Gaps = 10/314 (3%)
Query: 17 VSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAH 70
++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+ FAH
Sbjct: 27 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 86
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130
RD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TDDEK
Sbjct: 87 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEK 146
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+WK++ +E++ REN KDI+ GFD T+IFS+ + F +N++K++K + N+
Sbjct: 147 FLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNE 205
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 250
+ +FGF +IG+V FP + G CL+P A+DQDP+FR+ RD
Sbjct: 206 AIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDPFFRLARD 262
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQE 310
A +G KP+ I S P L+G KMSASDPNS+IY+ D+ YA+SGG++
Sbjct: 263 KAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRK 322
Query: 311 SVELHRKLGANLEV 324
++E HR+ G +++V
Sbjct: 323 TLEEHREKGGDIDV 336
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GFT + IG + FP +Q + RCLIP AIDQDPY+R+ RD A +
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAIDQDPYWRLQRDFAESL 231
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELH 315
GY+K A + S F P+L +GKMSAS P +AIY+TDS + +GG+ +++
Sbjct: 232 GYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQ 291
Query: 316 RKLGANLEVLEVL-FLQIF 333
R+ G E V +L+IF
Sbjct: 292 REKGGEPEKCVVFKWLEIF 310
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 185/356 (51%), Gaps = 59/356 (16%)
Query: 33 LIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92
+I +FG + L+ R + +TG H LRRG+F+AHRD + L YEKG Y+YTGR
Sbjct: 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR 98
Query: 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKD 151
GPSS ALHLGHL+PF+FTKYLQDAFK +VIQ+TDDEK + ++LS E REN KD
Sbjct: 99 GPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKD 158
Query: 152 IIACGFDVTKT---------------------------------FIFSDFDYVGGAFY-- 176
IIACGFD KT F FS+ VG A +
Sbjct: 159 IIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPP 218
Query: 177 KNMVKVAKC----VTYNKVVGIFGFTGEDHIGKVS--------------FPPVQAVXXXX 218
K M+ V + + +V G ED VS PV V
Sbjct: 219 KQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELF 278
Query: 219 XXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 278
CLI I+QDPYFR+ RD+APR+G+ K A + F P LQG KM
Sbjct: 279 PDSKRYQKAM----CLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKM 334
Query: 279 SASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEV-LEVLFLQIF 333
SASDPNSAIY+TD+ YAFSGG+++ E HR GA+L V + V +L++F
Sbjct: 335 SASDPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVF 390
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 155/307 (50%), Gaps = 6/307 (1%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DY++LI+ G + + R+++L+G+ PH +L RGVF A + L+ LD E + ++
Sbjct: 26 DYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFI 85
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148
+ + P E + L + F +YLQDAF + ++IQ+ DD K + + ++ E+ +++ +
Sbjct: 86 FIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144
Query: 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSF 208
K I+A GF+ KTFI++D+ Y G Y+ + V K YN V F F D+IGK++
Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFGK-MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLAS 203
Query: 209 PPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 268
P + RCL+ +I + + +A + + +P ++
Sbjct: 204 PSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMV 261
Query: 269 PALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEV-LEV 327
P L G T SD NS I ++D+ AFSGG+ + E H+KLG ++ +
Sbjct: 262 PLLSGVTKFDIPSDHNS-ILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSF 320
Query: 328 LFLQIFT 334
L IF+
Sbjct: 321 QLLNIFS 327
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 148/315 (46%), Gaps = 23/315 (7%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGK 205
E ++IA G D T + F G Y ++++ + VT ++ I+ GE K
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIY---GELTPAK 185
Query: 206 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPA 261
+ QA G H+ ++P DQDP+ R+TRD+A R+ +PA
Sbjct: 186 MMASLTQAA-DILHVQLDEYGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPA 242
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
P L G KMS+S P+S I++TD A +GG+ + E R+LG
Sbjct: 243 STYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGV 299
Query: 322 LEVLEVLFLQIFTLF 336
EV V + ++ L
Sbjct: 300 PEVCSVYHMDLYHLM 314
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVE 139
E EK Y G PS E +HLGH++ LQ+A F++ ++ L D + + + E
Sbjct: 28 ETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI--IVLLADIHAYLNEKGTFE 84
Query: 140 ESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIF 195
E +A N K IA G D ++ F+ + + +++K+A+ T N+ +
Sbjct: 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEV 144
Query: 196 GFTGED-HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRC-LIPCAIDQDPYFRMTRDVAP 253
ED + ++ +P +QA+ HL L IDQ + R+ P
Sbjct: 145 SRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQRKIHMLARENLP 192
Query: 254 RIGYHKPALIESSFFPALQGETGKMSASDPN 284
R+GY P + + L G+ KMS+S N
Sbjct: 193 RLGYSSPVCLHTPILVGLDGQ--KMSSSKGN 221
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 23/149 (15%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R ++K
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAER--FNKRY 150
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290
+L T KMS SDPN Y+T
Sbjct: 151 FTIPERIMSLVDPTKKMSKSDPNPKAYIT 179
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y I
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY-----IGELERMV 106
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 107 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 155
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 156 IPEARRIMSLVDPTKKMSKSDPNPKAYIT 184
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287
+DQ F + + P +GY K A + + P L + GKMSASDPNS I
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKI 237
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 108
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R A
Sbjct: 109 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFFTIPEA 157
Query: 262 LIES--SFFPALQGETGKMSASDPNSAIYVT 290
I + +L T KMS SDPN Y+T
Sbjct: 158 RIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 188
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 262 LIESSF------FPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 262 LIESSF------FPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 262 LIESSF------FPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A P+V+
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVL 70
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 283
+DQ + RDVA ++G KP I + +LQG KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244
Query: 284 NSAIYVTDS 292
+A++V DS
Sbjct: 245 ETAVFVVDS 253
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL P + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIAL 68
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLS 137
+ G F Y G PS +H+ L+ M T + + ++I + D + + N
Sbjct: 36 DSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGG-QMIIYIADWFAKMNLKMNGD 93
Query: 138 VEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKV---V 192
+ + + L R + ACG ++ T FI+ S+F ++ + M+ +A+ T ++V
Sbjct: 94 INKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCC 153
Query: 193 GIFGFTGEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 250
I G D + ++ +P +QA G D + IDQ + +
Sbjct: 154 QIMGRNESDCLKASQIFYPCMQAADVFELVPE----GID----ICQLGIDQRKVNMLAIE 205
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
A G P + +L G KMS SDP AI++ D+
Sbjct: 206 YANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 35 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 70
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 153 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK------- 205
+A G D T+ +F + A M++ C+ Y + E GK
Sbjct: 66 LAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVYIGELERMTQFKEKSAGKEAVSAGL 122
Query: 206 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALI 263
+++PP+ A ++P DQ + +TRD+A R Y + I
Sbjct: 123 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYGELFTI 171
Query: 264 ESSFFP-------ALQGETGKMSASDPNSAIYVT 290
+ P +L T KMS SDPN Y+T
Sbjct: 172 PEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 205
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 284
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 285 SAIYVT 290
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 239 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIAL 68
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIAL 68
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 141 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-----AFYKNMVKVAKCVT 187
+Q+L NAK+I A D +TF++ D D + A Y+ + +AK +T
Sbjct: 110 NQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAKQIT 161
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIAL 68
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD-AFKVPLVI----QLTDD 128
++L ++G + G P+ LHLGH V + Q+ KV L+I + D
Sbjct: 26 EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGD 85
Query: 129 EKCMWKN---LSVEESQRLARENAKDIIACGFDVTKT--FIFS---DFDYVGGAFYKNMV 180
K L++EE+ RENAK +A + + +F + +++ G +K +V
Sbjct: 86 PSGRSKTRPPLTLEET----RENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVV 141
Query: 181 KVAKCVTYNKVV 192
++ +T +++
Sbjct: 142 RLTSLMTVAQML 153
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 136 LSVEESQRLARENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY-NK 190
++V + + R+N +++ +A G D K +F + A M++ CV Y +
Sbjct: 79 ITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQ---CVAYIGE 135
Query: 191 VVGIFGFT----GEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPY 244
+ + F G + + G +++PP+ A G D L+P DQ +
Sbjct: 136 LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLY-------GTD----LVPPGEDQKQH 184
Query: 245 FRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPNSAIYVT 290
+TR++A R Y+ I P +L KMS SDPN Y+T
Sbjct: 185 LELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 284
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 285 SAIYVT 290
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 284
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 285 SAIYVT 290
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 260 PALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
P ++ P L KMS SD NSAI++ DS
Sbjct: 230 PVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS 262
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 47/221 (21%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM-----WKNLS----- 137
+ +G P+ + LH+GHLV A + + +Q +E C W L+
Sbjct: 15 ILSGMRPTGK-LHIGHLV---------GALENWVKLQEEGNE-CFYFVADWHALTTHYDD 63
Query: 138 VEESQRLARENAKDIIACGFDVTKTFIFSDF---DYVGGAFYKNMV----KVAKCVTYNK 190
V + + R+ + +ACG D K+ IF ++ A +M+ ++ + TY +
Sbjct: 64 VSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKE 123
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 250
+ + G + +P +QA +P DQ + +TR+
Sbjct: 124 IKSELNYKDLSTAGFLIYPVLQAADILIYKAEG-----------VPVGEDQVYHIELTRE 172
Query: 251 VAPRIGY------HKPALIESSFFPALQGETG-KMSASDPN 284
+A R Y +P I S P L G G KMS S N
Sbjct: 173 IARRFNYLYDEVFPEPEAILSR-VPKLPGTDGRKMSKSYGN 212
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 239 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
+DQ + R+ IG KP ++ L+ K S SDP+SAI+ D+
Sbjct: 191 LDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDT 245
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 89 YTGRGPSSEALHLGHLVPFM--FTKYLQ 114
Y G P++ +LH+GHL+P M F YL+
Sbjct: 68 YVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 185
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 75 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 112
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 88 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 125
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 80 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 117
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,086,010
Number of Sequences: 62578
Number of extensions: 355915
Number of successful extensions: 762
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 63
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)