Query 019674
Match_columns 337
No_of_seqs 257 out of 1531
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 9E-109 2E-113 758.3 22.6 326 9-334 7-336 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 2.5E-96 5E-101 718.9 27.9 320 15-334 1-323 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 2.2E-85 4.8E-90 640.2 25.0 303 12-334 1-308 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 1.2E-58 2.6E-63 439.4 19.6 234 83-334 3-253 (314)
5 PRK08560 tyrosyl-tRNA syntheta 100.0 7.4E-57 1.6E-61 435.3 21.9 235 60-309 6-245 (329)
6 cd00806 TrpRS_core catalytic c 100.0 1.1E-56 2.4E-61 425.2 19.9 230 87-334 1-246 (280)
7 TIGR00233 trpS tryptophanyl-tR 100.0 5.2E-55 1.1E-59 421.8 18.8 235 84-334 1-250 (328)
8 PRK00927 tryptophanyl-tRNA syn 100.0 3.7E-54 8E-59 417.0 18.1 229 87-334 3-252 (333)
9 PRK12282 tryptophanyl-tRNA syn 100.0 1.9E-52 4.1E-57 404.4 18.0 229 86-334 3-249 (333)
10 PTZ00126 tyrosyl-tRNA syntheta 100.0 2.1E-51 4.6E-56 402.8 22.4 234 61-309 43-288 (383)
11 cd00805 TyrRS_core catalytic c 100.0 8.2E-52 1.8E-56 390.0 18.4 206 87-307 2-225 (269)
12 PRK12556 tryptophanyl-tRNA syn 100.0 3.3E-51 7.1E-56 395.4 19.8 227 86-334 4-253 (332)
13 PRK13354 tyrosyl-tRNA syntheta 100.0 1E-50 2.3E-55 401.8 23.1 230 60-302 8-257 (410)
14 PF00579 tRNA-synt_1b: tRNA sy 100.0 2.3E-51 5E-56 390.8 12.5 236 82-334 2-254 (292)
15 PRK05912 tyrosyl-tRNA syntheta 100.0 9.2E-50 2E-54 395.3 22.7 229 60-302 9-259 (408)
16 cd00395 Tyr_Trp_RS_core cataly 100.0 3.1E-50 6.6E-55 379.9 17.3 206 87-305 1-227 (273)
17 PLN02886 aminoacyl-tRNA ligase 100.0 7.2E-50 1.6E-54 390.3 19.8 228 86-333 47-307 (389)
18 PRK12283 tryptophanyl-tRNA syn 100.0 6.5E-50 1.4E-54 390.4 18.9 227 87-333 4-316 (398)
19 PTZ00348 tyrosyl-tRNA syntheta 100.0 2.6E-48 5.7E-53 401.7 23.1 259 61-334 9-283 (682)
20 PRK12284 tryptophanyl-tRNA syn 100.0 6.5E-48 1.4E-52 379.2 19.7 227 85-334 2-253 (431)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.7E-46 3.6E-51 368.6 18.9 232 59-309 6-262 (377)
22 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.8E-42 4E-47 339.5 17.3 234 59-309 7-264 (401)
23 KOG2713 Mitochondrial tryptoph 100.0 2.4E-41 5.2E-46 311.4 14.5 228 85-330 13-264 (347)
24 KOG2144 Tyrosyl-tRNA synthetas 100.0 1.3E-39 2.9E-44 300.4 14.0 240 74-329 24-297 (360)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 6.5E-34 1.4E-38 294.8 16.3 280 28-330 299-627 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 100.0 4.7E-34 1E-38 272.7 12.4 236 59-307 34-315 (467)
27 cd00802 class_I_aaRS_core cata 99.4 7E-13 1.5E-17 113.4 9.5 65 208-282 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.2 6.1E-11 1.3E-15 110.2 11.5 170 93-302 9-191 (239)
29 PRK00750 lysK lysyl-tRNA synth 99.0 7.3E-09 1.6E-13 106.2 14.6 208 73-291 12-293 (510)
30 cd00418 GlxRS_core catalytic c 98.9 2.6E-08 5.6E-13 92.1 12.2 169 93-302 9-182 (230)
31 cd00674 LysRS_core_class_I cat 98.8 8.2E-08 1.8E-12 94.1 14.7 208 74-291 9-288 (353)
32 TIGR00467 lysS_arch lysyl-tRNA 98.3 8.6E-06 1.9E-10 83.7 14.2 197 84-291 18-287 (515)
33 cd09287 GluRS_non_core catalyt 97.8 0.00013 2.8E-09 68.0 10.2 166 90-283 6-172 (240)
34 cd00807 GlnRS_core catalytic c 97.6 0.00042 9.2E-09 64.5 10.0 158 93-283 9-170 (238)
35 COG1384 LysS Lysyl-tRNA synthe 97.6 0.00087 1.9E-08 68.1 12.7 105 84-192 19-155 (521)
36 PF01921 tRNA-synt_1f: tRNA sy 97.6 0.00043 9.3E-09 68.0 9.9 205 83-297 22-306 (360)
37 PRK14895 gltX glutamyl-tRNA sy 97.5 0.00081 1.7E-08 69.0 11.8 64 235-302 200-269 (513)
38 cd00672 CysRS_core catalytic c 97.5 0.00087 1.9E-08 61.5 10.5 76 83-159 19-105 (213)
39 PRK04156 gltX glutamyl-tRNA sy 97.5 0.0016 3.6E-08 67.6 13.4 179 84-282 100-343 (567)
40 PRK05710 glutamyl-Q tRNA(Asp) 97.5 0.0011 2.4E-08 63.8 11.2 68 94-171 14-82 (299)
41 PRK01611 argS arginyl-tRNA syn 97.4 0.00053 1.1E-08 70.6 9.0 199 85-295 112-339 (507)
42 TIGR00464 gltX_bact glutamyl-t 97.4 0.0018 3.9E-08 66.2 12.2 65 234-302 200-270 (470)
43 PRK01406 gltX glutamyl-tRNA sy 97.1 0.0042 9.2E-08 63.5 11.6 65 234-302 210-280 (476)
44 TIGR03838 queuosine_YadB gluta 97.1 0.013 2.8E-07 55.8 13.9 70 93-171 8-77 (272)
45 PLN03233 putative glutamate-tR 97.0 0.0063 1.4E-07 62.7 11.8 73 88-171 12-87 (523)
46 PRK00260 cysS cysteinyl-tRNA s 97.0 0.0039 8.4E-08 63.6 10.0 75 85-160 23-110 (463)
47 PTZ00402 glutamyl-tRNA synthet 97.0 0.011 2.4E-07 61.7 12.9 74 88-171 53-129 (601)
48 PLN02627 glutamyl-tRNA synthet 96.8 0.021 4.6E-07 59.0 13.2 65 234-302 252-322 (535)
49 COG0008 GlnS Glutamyl- and glu 96.8 0.021 4.6E-07 58.3 12.8 74 88-171 10-86 (472)
50 PRK12410 glutamylglutaminyl-tR 96.7 0.016 3.6E-07 58.5 11.1 68 93-171 7-75 (433)
51 PRK12558 glutamyl-tRNA synthet 96.6 0.021 4.5E-07 57.9 11.3 69 234-306 199-273 (445)
52 PLN02907 glutamate-tRNA ligase 96.6 0.047 1E-06 58.7 14.4 74 88-171 214-289 (722)
53 cd00671 ArgRS_core catalytic c 96.5 0.011 2.5E-07 53.8 8.2 46 236-283 164-212 (212)
54 COG0215 CysS Cysteinyl-tRNA sy 96.5 0.012 2.6E-07 59.6 8.8 71 86-157 23-105 (464)
55 PLN02859 glutamine-tRNA ligase 96.3 0.082 1.8E-06 56.9 14.1 74 88-171 265-340 (788)
56 TIGR00463 gltX_arch glutamyl-t 94.0 0.15 3.3E-06 53.2 7.3 74 88-171 94-169 (560)
57 cd00668 Ile_Leu_Val_MetRS_core 93.8 0.053 1.2E-06 52.2 3.4 55 234-291 229-286 (312)
58 PRK05347 glutaminyl-tRNA synth 93.3 0.76 1.7E-05 47.9 10.9 87 76-171 18-106 (554)
59 PF00749 tRNA-synt_1c: tRNA sy 93.1 0.3 6.6E-06 47.3 7.4 68 233-302 201-274 (314)
60 PTZ00437 glutaminyl-tRNA synth 93.0 0.25 5.3E-06 51.6 6.8 74 88-171 52-127 (574)
61 TIGR00440 glnS glutaminyl-tRNA 92.8 0.45 9.9E-06 49.3 8.5 70 93-171 8-77 (522)
62 PRK14703 glutaminyl-tRNA synth 91.9 1.2 2.5E-05 48.4 10.5 85 78-171 22-108 (771)
63 TIGR00456 argS arginyl-tRNA sy 91.9 0.34 7.4E-06 50.7 6.4 58 236-297 333-391 (566)
64 cd00818 IleRS_core catalytic c 91.6 0.18 3.9E-06 49.3 3.7 54 234-291 255-312 (338)
65 cd02156 nt_trans nucleotidyl t 91.2 0.68 1.5E-05 37.1 6.1 63 89-158 3-65 (105)
66 cd00817 ValRS_core catalytic c 90.5 0.21 4.6E-06 49.6 3.1 55 234-291 299-356 (382)
67 PRK00133 metG methionyl-tRNA s 90.3 0.87 1.9E-05 48.7 7.7 76 84-160 2-89 (673)
68 COG0018 ArgS Arginyl-tRNA synt 90.3 0.94 2E-05 47.6 7.7 103 233-336 337-470 (577)
69 cd00812 LeuRS_core catalytic c 89.8 0.16 3.5E-06 49.1 1.5 52 236-291 229-288 (314)
70 COG0060 IleS Isoleucyl-tRNA sy 89.5 0.42 9.2E-06 52.6 4.5 59 234-299 558-619 (933)
71 PRK12451 arginyl-tRNA syntheta 89.4 0.26 5.5E-06 51.6 2.8 56 236-295 330-388 (562)
72 PRK00390 leuS leucyl-tRNA synt 89.3 0.81 1.8E-05 50.0 6.7 76 83-160 31-119 (805)
73 COG0143 MetG Methionyl-tRNA sy 88.4 1.1 2.4E-05 46.9 6.6 74 84-158 5-90 (558)
74 KOG1147 Glutamyl-tRNA syntheta 88.3 1.4 3E-05 45.6 7.0 68 88-164 201-271 (712)
75 PRK05743 ileS isoleucyl-tRNA s 87.5 0.48 1E-05 52.4 3.5 52 234-289 548-603 (912)
76 PLN02224 methionine-tRNA ligas 87.4 1.5 3.2E-05 46.6 6.9 93 64-160 52-156 (616)
77 PRK11893 methionyl-tRNA synthe 87.2 0.35 7.6E-06 49.6 2.1 51 235-291 258-312 (511)
78 PF00133 tRNA-synt_1: tRNA syn 86.6 0.5 1.1E-05 49.8 2.9 53 234-289 517-572 (601)
79 PRK13804 ileS isoleucyl-tRNA s 86.5 0.57 1.2E-05 52.2 3.4 54 234-290 586-642 (961)
80 TIGR00392 ileS isoleucyl-tRNA 86.1 0.51 1.1E-05 51.9 2.7 55 234-291 567-624 (861)
81 PRK12268 methionyl-tRNA synthe 85.5 1.4 3.1E-05 45.8 5.6 72 88-160 6-91 (556)
82 TIGR00435 cysS cysteinyl-tRNA 85.5 2.4 5.2E-05 43.4 7.0 78 82-160 19-107 (465)
83 TIGR00396 leuS_bact leucyl-tRN 85.4 3.1 6.8E-05 45.8 8.3 78 83-160 28-116 (842)
84 PF09334 tRNA-synt_1g: tRNA sy 85.3 2.3 5E-05 42.5 6.8 52 234-291 285-340 (391)
85 TIGR00398 metG methionyl-tRNA 84.8 1.7 3.7E-05 44.9 5.8 54 234-291 285-340 (530)
86 cd00814 MetRS_core catalytic c 84.4 1.2 2.6E-05 43.1 4.1 52 236-291 240-293 (319)
87 PRK11893 methionyl-tRNA synthe 84.0 2.7 5.8E-05 43.1 6.7 66 94-160 12-88 (511)
88 PF09334 tRNA-synt_1g: tRNA sy 83.9 0.35 7.5E-06 48.4 0.2 36 94-130 10-49 (391)
89 PRK13208 valS valyl-tRNA synth 82.7 1.1 2.4E-05 48.9 3.4 53 235-291 490-546 (800)
90 PLN02286 arginine-tRNA ligase 82.0 2.1 4.6E-05 45.0 5.1 61 233-296 330-396 (576)
91 cd00814 MetRS_core catalytic c 82.0 3.4 7.4E-05 39.9 6.2 66 95-161 12-88 (319)
92 PRK05729 valS valyl-tRNA synth 81.1 1.4 3E-05 48.6 3.6 53 235-291 477-533 (874)
93 PRK12268 methionyl-tRNA synthe 81.1 1 2.2E-05 46.9 2.3 53 235-291 291-347 (556)
94 TIGR00422 valS valyl-tRNA synt 81.0 1.4 3.1E-05 48.4 3.6 54 234-291 481-538 (861)
95 PLN02843 isoleucyl-tRNA synthe 81.0 1.4 3E-05 49.3 3.4 52 234-289 567-622 (974)
96 PRK06039 ileS isoleucyl-tRNA s 80.1 1.5 3.3E-05 48.9 3.4 55 234-291 548-605 (975)
97 PRK14900 valS valyl-tRNA synth 79.8 1.5 3.3E-05 49.3 3.3 53 235-291 495-551 (1052)
98 PRK12418 cysteinyl-tRNA synthe 79.6 1.5 3.2E-05 43.9 2.8 72 85-157 9-92 (384)
99 TIGR00398 metG methionyl-tRNA 78.9 1.6 3.5E-05 45.1 3.0 25 16-40 60-84 (530)
100 PRK00133 metG methionyl-tRNA s 78.8 1.5 3.3E-05 46.9 2.8 50 236-291 289-342 (673)
101 PF01406 tRNA-synt_1e: tRNA sy 77.4 7.3 0.00016 37.7 6.7 75 84-160 7-94 (300)
102 PRK12267 methionyl-tRNA synthe 77.2 1.3 2.8E-05 47.1 1.8 51 235-291 258-312 (648)
103 PLN02943 aminoacyl-tRNA ligase 77.2 1.8 3.9E-05 48.3 2.9 53 235-291 540-596 (958)
104 cd00812 LeuRS_core catalytic c 77.0 3.9 8.6E-05 39.4 4.9 66 94-160 11-87 (314)
105 PF06543 Lac_bphage_repr: Lact 76.5 2.2 4.7E-05 29.7 2.1 31 26-57 16-46 (49)
106 PLN02959 aminoacyl-tRNA ligase 76.3 2.2 4.9E-05 48.1 3.4 53 235-291 675-731 (1084)
107 PF00750 tRNA-synt_1d: tRNA sy 75.8 1.2 2.6E-05 43.9 0.9 69 228-300 237-310 (354)
108 PRK12267 methionyl-tRNA synthe 75.6 8.3 0.00018 41.1 7.3 75 85-160 5-91 (648)
109 PRK12418 cysteinyl-tRNA synthe 75.1 9.1 0.0002 38.3 7.0 26 262-290 248-273 (384)
110 PRK12300 leuS leucyl-tRNA synt 73.8 2.2 4.7E-05 47.3 2.5 52 235-291 534-590 (897)
111 PLN02946 cysteine-tRNA ligase 73.5 13 0.00027 39.2 7.8 73 84-158 79-164 (557)
112 TIGR00435 cysS cysteinyl-tRNA 73.1 3 6.5E-05 42.7 3.1 52 236-291 224-278 (465)
113 PTZ00427 isoleucine-tRNA ligas 72.8 3 6.5E-05 47.6 3.3 50 234-288 676-730 (1205)
114 PRK14534 cysS cysteinyl-tRNA s 72.6 10 0.00023 39.0 6.8 74 85-160 21-117 (481)
115 TIGR03447 mycothiol_MshC cyste 72.6 3.2 6.9E-05 41.9 3.1 70 88-158 40-120 (411)
116 TIGR00395 leuS_arch leucyl-tRN 72.4 2.7 5.9E-05 46.8 2.8 53 234-291 576-633 (938)
117 PLN02610 probable methionyl-tR 72.2 2.3 5.1E-05 46.5 2.2 53 235-291 305-361 (801)
118 cd00668 Ile_Leu_Val_MetRS_core 72.2 9.2 0.0002 36.7 6.1 35 94-130 11-50 (312)
119 PLN02610 probable methionyl-tR 72.2 15 0.00032 40.3 8.3 75 85-160 18-105 (801)
120 cd00818 IleRS_core catalytic c 71.4 9.7 0.00021 37.2 6.1 44 86-130 3-51 (338)
121 PLN02563 aminoacyl-tRNA ligase 71.3 2.1 4.5E-05 47.8 1.6 13 277-290 723-735 (963)
122 cd00817 ValRS_core catalytic c 71.1 13 0.00028 36.9 7.0 43 86-129 3-50 (382)
123 PRK14536 cysS cysteinyl-tRNA s 71.1 14 0.0003 38.2 7.4 76 84-160 22-119 (490)
124 cd02168 NMNAT_Nudix Nicotinami 70.6 25 0.00055 31.2 8.1 69 88-166 3-73 (181)
125 PLN02381 valyl-tRNA synthetase 70.5 3.6 7.9E-05 46.4 3.2 52 235-290 612-667 (1066)
126 PLN02882 aminoacyl-tRNA ligase 70.3 3.9 8.4E-05 46.6 3.4 51 234-288 570-624 (1159)
127 TIGR03447 mycothiol_MshC cyste 70.1 12 0.00026 37.8 6.5 25 262-289 275-299 (411)
128 PLN02563 aminoacyl-tRNA ligase 69.5 13 0.00028 41.6 7.2 79 82-160 108-198 (963)
129 PTZ00419 valyl-tRNA synthetase 69.1 3.5 7.6E-05 46.2 2.7 52 234-289 541-596 (995)
130 PLN02224 methionine-tRNA ligas 68.9 3.6 7.8E-05 43.7 2.6 50 236-291 326-379 (616)
131 PRK14536 cysS cysteinyl-tRNA s 66.8 4.9 0.00011 41.5 3.1 27 262-291 266-292 (490)
132 COG0143 MetG Methionyl-tRNA sy 66.3 3.1 6.7E-05 43.6 1.5 51 236-291 293-346 (558)
133 PF01406 tRNA-synt_1e: tRNA sy 63.9 5.1 0.00011 38.7 2.4 51 237-291 212-265 (300)
134 TIGR00396 leuS_bact leucyl-tRN 63.5 2.9 6.3E-05 46.0 0.7 14 277-291 604-617 (842)
135 PRK14535 cysS cysteinyl-tRNA s 63.1 18 0.00039 38.9 6.4 76 84-160 247-334 (699)
136 COG0495 LeuS Leucyl-tRNA synth 62.7 25 0.00054 38.6 7.6 77 84-162 34-123 (814)
137 PTZ00399 cysteinyl-tRNA-synthe 62.6 19 0.00041 38.6 6.6 75 84-159 59-147 (651)
138 TIGR00422 valS valyl-tRNA synt 60.0 13 0.00029 40.9 5.1 59 62-129 19-81 (861)
139 KOG1148 Glutaminyl-tRNA synthe 59.0 32 0.00068 36.4 7.1 72 88-171 249-324 (764)
140 PLN02946 cysteine-tRNA ligase 58.9 4.1 8.8E-05 42.7 0.8 25 262-290 311-335 (557)
141 cd02166 NMNAT_Archaea Nicotina 58.7 87 0.0019 27.2 9.1 66 97-169 9-76 (163)
142 KOG2007 Cysteinyl-tRNA synthet 58.6 20 0.00044 37.0 5.6 50 83-133 53-110 (586)
143 PF00133 tRNA-synt_1: tRNA syn 58.1 38 0.00082 35.8 7.9 45 81-126 20-68 (601)
144 KOG0432 Valyl-tRNA synthetase 57.1 16 0.00036 40.1 4.9 54 234-291 549-606 (995)
145 COG0525 ValS Valyl-tRNA synthe 56.8 9.9 0.00021 41.9 3.3 51 234-288 481-535 (877)
146 PTZ00399 cysteinyl-tRNA-synthe 56.6 7.2 0.00016 41.7 2.2 50 236-291 273-328 (651)
147 PLN02943 aminoacyl-tRNA ligase 56.1 35 0.00076 38.3 7.5 47 82-129 86-136 (958)
148 PRK14535 cysS cysteinyl-tRNA s 55.6 5 0.00011 43.0 0.8 26 262-291 496-521 (699)
149 PTZ00419 valyl-tRNA synthetase 52.3 31 0.00068 38.7 6.5 46 83-129 59-108 (995)
150 PRK13793 nicotinamide-nucleoti 51.6 1.4E+02 0.0031 27.1 9.4 57 86-149 6-64 (196)
151 PRK05379 bifunctional nicotina 50.8 77 0.0017 31.0 8.2 69 85-165 7-77 (340)
152 PRK00390 leuS leucyl-tRNA synt 49.2 8.2 0.00018 42.3 1.3 49 234-291 526-583 (805)
153 PRK14534 cysS cysteinyl-tRNA s 49.0 10 0.00022 39.1 1.8 25 263-291 268-292 (481)
154 PRK05729 valS valyl-tRNA synth 48.4 44 0.00095 37.0 6.8 58 62-129 23-84 (874)
155 PF00749 tRNA-synt_1c: tRNA sy 47.8 19 0.00041 34.9 3.4 69 93-171 9-78 (314)
156 COG0018 ArgS Arginyl-tRNA synt 47.3 21 0.00046 37.7 3.9 42 89-131 123-169 (577)
157 PF00750 tRNA-synt_1d: tRNA sy 46.1 30 0.00064 34.1 4.6 41 89-130 26-71 (354)
158 TIGR00456 argS arginyl-tRNA sy 45.2 24 0.00052 37.0 3.9 42 87-129 116-162 (566)
159 TIGR00392 ileS isoleucyl-tRNA 43.4 35 0.00075 37.7 5.0 44 82-126 34-81 (861)
160 KOG0435 Leucyl-tRNA synthetase 43.0 44 0.00096 36.0 5.3 56 59-123 40-99 (876)
161 PLN02381 valyl-tRNA synthetase 42.5 29 0.00064 39.3 4.3 46 83-129 127-176 (1066)
162 PRK14900 valS valyl-tRNA synth 42.2 26 0.00055 39.7 3.8 46 83-129 47-96 (1052)
163 COG0495 LeuS Leucyl-tRNA synth 41.7 41 0.00089 37.0 5.1 53 236-291 531-592 (814)
164 KOG1149 Glutamyl-tRNA syntheta 41.1 49 0.0011 33.8 5.1 47 252-302 258-310 (524)
165 PRK13208 valS valyl-tRNA synth 40.8 29 0.00064 37.9 3.9 46 83-129 37-86 (800)
166 PTZ00427 isoleucine-tRNA ligas 40.6 45 0.00097 38.4 5.4 45 83-128 101-149 (1205)
167 PRK06039 ileS isoleucyl-tRNA s 40.0 21 0.00045 40.1 2.6 42 82-124 39-84 (975)
168 COG0525 ValS Valyl-tRNA synthe 39.9 24 0.00053 38.9 3.0 35 95-130 45-82 (877)
169 TIGR00234 tyrS tyrosyl-tRNA sy 39.0 19 0.00041 35.9 1.9 42 245-287 195-241 (377)
170 KOG0433 Isoleucyl-tRNA synthet 37.4 31 0.00066 37.5 3.2 56 235-299 570-630 (937)
171 PRK00777 phosphopantetheine ad 36.7 1.1E+02 0.0025 26.3 6.2 46 235-282 92-137 (153)
172 TIGR03569 NeuB_NnaB N-acetylne 36.5 3.3E+02 0.007 26.7 10.0 95 14-123 91-199 (329)
173 PLN02843 isoleucyl-tRNA synthe 36.5 95 0.0021 35.0 7.1 44 82-126 30-77 (974)
174 PLN02882 aminoacyl-tRNA ligase 33.9 61 0.0013 37.2 5.1 43 83-126 37-83 (1159)
175 COG2989 Uncharacterized protei 32.8 23 0.00049 36.9 1.3 30 286-316 451-481 (561)
176 PLN02286 arginine-tRNA ligase 32.5 39 0.00085 35.6 3.1 40 89-129 123-167 (576)
177 COG2521 Predicted archaeal met 32.3 21 0.00045 33.7 0.9 93 15-120 173-271 (287)
178 PRK12451 arginyl-tRNA syntheta 31.0 52 0.0011 34.5 3.8 41 89-130 119-164 (562)
179 COG5309 Exo-beta-1,3-glucanase 28.7 5.4E+02 0.012 24.8 9.7 115 38-159 57-172 (305)
180 PLN02660 pantoate--beta-alanin 28.6 71 0.0015 30.7 3.9 57 242-306 157-213 (284)
181 PRK04147 N-acetylneuraminate l 28.5 5.1E+02 0.011 24.4 11.8 137 15-187 10-159 (293)
182 TIGR00124 cit_ly_ligase [citra 27.3 1E+02 0.0022 30.2 4.9 99 28-150 93-195 (332)
183 COG1907 Predicted archaeal sug 26.8 1.3E+02 0.0028 29.2 5.2 85 34-128 216-305 (312)
184 PRK12457 2-dehydro-3-deoxyphos 25.5 4.7E+02 0.01 25.2 8.7 104 46-158 122-232 (281)
185 PF06574 FAD_syn: FAD syntheta 25.1 1.6E+02 0.0034 25.5 5.1 43 84-129 5-47 (157)
186 TIGR00125 cyt_tran_rel cytidyl 25.1 2.5E+02 0.0053 19.6 5.9 27 97-127 9-35 (66)
187 COG0722 AroG 3-deoxy-D-arabino 24.9 6.8E+02 0.015 24.7 10.9 125 82-214 48-203 (351)
188 TIGR01527 arch_NMN_Atrans nico 24.8 2.7E+02 0.0059 24.3 6.6 45 97-145 9-55 (165)
189 TIGR01362 KDO8P_synth 3-deoxy- 24.7 3.9E+02 0.0084 25.4 7.9 104 45-158 107-216 (258)
190 PRK05743 ileS isoleucyl-tRNA s 24.7 74 0.0016 35.5 3.7 46 83-129 48-97 (912)
191 PF00701 DHDPS: Dihydrodipicol 24.4 5.9E+02 0.013 23.8 11.5 134 15-185 8-154 (289)
192 PRK05198 2-dehydro-3-deoxyphos 24.0 3.4E+02 0.0075 25.8 7.5 104 45-158 115-224 (264)
193 PF01467 CTP_transf_2: Cytidyl 23.9 2.2E+02 0.0049 23.0 5.8 47 97-146 7-56 (157)
194 PTZ00240 60S ribosomal protein 23.9 2.5E+02 0.0053 27.6 6.7 19 64-82 93-111 (323)
195 KOG0432 Valyl-tRNA synthetase 23.8 75 0.0016 35.2 3.3 34 95-130 87-124 (995)
196 cd00560 PanC Pantoate-beta-ala 23.2 1.3E+02 0.0029 28.7 4.7 54 242-302 152-205 (277)
197 cd02064 FAD_synthetase_N FAD s 22.8 1.1E+02 0.0023 26.9 3.8 34 97-130 9-42 (180)
198 TIGR00395 leuS_arch leucyl-tRN 22.8 70 0.0015 35.8 3.1 40 83-123 24-67 (938)
199 cd02167 NMNAT_NadR Nicotinamid 22.3 2.4E+02 0.0052 24.3 5.8 52 88-146 3-56 (158)
200 cd00954 NAL N-Acetylneuraminic 22.2 6.6E+02 0.014 23.6 13.4 137 15-187 7-157 (288)
201 TIGR01463 mtaA_cmuA methyltran 21.8 3.5E+02 0.0076 25.9 7.5 69 66-150 237-307 (340)
202 KOG0437 Leucyl-tRNA synthetase 20.7 39 0.00085 36.8 0.6 10 275-284 708-717 (1080)
203 COG0414 PanC Panthothenate syn 20.6 1.2E+02 0.0025 29.2 3.6 54 242-302 153-206 (285)
204 TIGR03712 acc_sec_asp2 accesso 20.4 2.7E+02 0.0058 29.0 6.3 71 83-164 288-361 (511)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-109 Score=758.31 Aligned_cols=326 Identities=67% Similarity=1.190 Sum_probs=319.5
Q ss_pred hhhhcCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCce
Q 019674 9 REEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKF 86 (337)
Q Consensus 9 ~~~~~~~~~~p~~~~~--~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~ 86 (337)
..+..||+||||+|++ ..+|||||||.+|||++|++++++|+|++||++||+|+|||+||+|||++.||+++++|+||
T Consensus 7 ~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpF 86 (397)
T KOG2145|consen 7 ATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPF 86 (397)
T ss_pred ccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCce
Confidence 3567899999999977 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 019674 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~ 166 (337)
|+|||++||+++|||||++|+++++|||+++++|+||+++|+++++++.++.|+..+++++|+++|+|+||||++|+||+
T Consensus 87 yLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFs 166 (397)
T KOG2145|consen 87 YLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFS 166 (397)
T ss_pred EEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred Cccccc-cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHH
Q 019674 167 DFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (337)
Q Consensus 167 ~s~~~~-~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~ 245 (337)
|.+|.+ +.+|.++++|+|++|+|++++++||+++.++|++.+|..|||+||++|||.|+....|++|+|||++|||||+
T Consensus 167 n~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyF 246 (397)
T KOG2145|consen 167 NLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYF 246 (397)
T ss_pred chhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHH
Confidence 999997 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-
Q 019674 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV- 324 (337)
Q Consensus 246 ~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~- 324 (337)
||+||+|+|++++||+.+|+.++|.|+|.+.|||.|+|||+|||+|++++|++||++|||||||+|+|+||++||||+|
T Consensus 247 RmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVD 326 (397)
T KOG2145|consen 247 RMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVD 326 (397)
T ss_pred HhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh
Q 019674 325 LEVLFLQIFT 334 (337)
Q Consensus 325 ~~~~~l~~f~ 334 (337)
|+|+||+||+
T Consensus 327 V~~~YLsFFl 336 (397)
T KOG2145|consen 327 VSFQYLSFFL 336 (397)
T ss_pred ehHHHHHHHh
Confidence 9999999996
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.5e-96 Score=718.86 Aligned_cols=320 Identities=86% Similarity=1.395 Sum_probs=307.3
Q ss_pred cccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEec
Q 019674 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (337)
Q Consensus 15 ~~~~p~~~~~--~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~ 92 (337)
|.||||+|++ .+.|||+||+++|||++||+++++|++++||+++|+|+|||+||+|||++.+|+++++|+++++|||+
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 5699999994 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~ 172 (337)
+|||++|||||++|+++++|||+++|++++|+|||+++++.+.+++|++++++++|+++|+|+||||++++||+|++|.+
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99998899999999999999999999999999999999997779999999999999999999999999999999999986
Q ss_pred cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHh
Q 019674 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (337)
Q Consensus 173 ~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla 252 (337)
..||.++++++|++|++++++++||+++.++|+++||+|||||+|+.+||.++....+++|+||||+||+||++||||+|
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia 240 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHH
Confidence 67999999999999999999999998889999999999999999999999887766678999999999999999999999
Q ss_pred hhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHH
Q 019674 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQ 331 (337)
Q Consensus 253 ~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~ 331 (337)
+|+|+.+|+.++++++|+|+|+++|||||.+||+|||+|+|++|++||+|||||||++|+++|+++||||++ ++|+||.
T Consensus 241 ~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~ 320 (383)
T PLN02486 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLN 320 (383)
T ss_pred HHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHH
Confidence 999999999999999999999878999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHh
Q 019674 332 IFT 334 (337)
Q Consensus 332 ~f~ 334 (337)
+|.
T Consensus 321 ~f~ 323 (383)
T PLN02486 321 FFL 323 (383)
T ss_pred HHc
Confidence 994
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-85 Score=640.19 Aligned_cols=303 Identities=41% Similarity=0.707 Sum_probs=284.6
Q ss_pred hcCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEe
Q 019674 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG 91 (337)
Q Consensus 12 ~~~~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG 91 (337)
++++.||||+|++ .+||+||+++||+++||+++++ +++ +|+|+|||+||+|||++.+++++++|+++++|||
T Consensus 1 ~~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG 72 (368)
T PRK12285 1 EDEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTG 72 (368)
T ss_pred CCCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEc
Confidence 3678999999998 8999999999999999999998 998 5999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 92 ~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
++||| +|||||+++++.++|||+ +|++++|+|||+||++.|..+++++++++++++++|+||||||++++||.||+|.
T Consensus 73 ~~PSG-~lHLGh~~~~~~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 73 FMPSG-PMHIGHKMVFDELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI 150 (368)
T ss_pred cCCCC-CccHHHHHHHHHHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH
Confidence 99998 799999999999999999 5899999999999999877999999999999999999999999999999999997
Q ss_pred ccccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHH
Q 019674 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (337)
Q Consensus 172 ~~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdl 251 (337)
.+|..++.+++++|++++++.+||+++.|+|+++||+|||||+| +|+++. ...+|+||||.||+||+++|||+
T Consensus 151 --~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil---~~~~~~--~~~~~lvPvG~DQ~~h~~ltRdi 223 (368)
T PRK12285 151 --KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEE--GPKPTLVPVGIDQDPHIRLTRDI 223 (368)
T ss_pred --HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHH---hhcccc--cCCceEEEeccchHHHHHHHHHH
Confidence 38888899999999999999999988999999999999999876 333332 12569999999999999999999
Q ss_pred hhhh----CCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hH
Q 019674 252 APRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LE 326 (337)
Q Consensus 252 a~k~----~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~ 326 (337)
|+|+ |+++|++++++++|||+| +|||||.|+|+|||+|+|++|++||++ |||||+.|+++|++.||||++ ++
T Consensus 224 A~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v 300 (368)
T PRK12285 224 AERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVV 300 (368)
T ss_pred HHHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchH
Confidence 9999 889999999999999999 799999999999999999999999999 999999999999999999999 99
Q ss_pred HHHHHHHh
Q 019674 327 VLFLQIFT 334 (337)
Q Consensus 327 ~~~l~~f~ 334 (337)
|+|+++|+
T Consensus 301 ~~~l~~~~ 308 (368)
T PRK12285 301 YELLLYHL 308 (368)
T ss_pred HHHHHHHh
Confidence 99999985
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-58 Score=439.41 Aligned_cols=234 Identities=29% Similarity=0.398 Sum_probs=210.3
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTK 161 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~-e~i~~~~~~~~~~ilA~G~dp~k 161 (337)
..+++||||++|||. ||||||++++...|.|+..+..+++.|||+||++.+..++ +.+++++++++++|+|||+||+|
T Consensus 3 ~~~~~vlSG~~PSG~-lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCCC-cchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 467899999999995 9999999999888866654468888899999999876444 88999999999999999999999
Q ss_pred eEEEeCccccccccHHHHHHHHhhcCHHHHHHhhCCCCC-------ccccccchhhhhcCCCCCCCcCccccCCCCcccc
Q 019674 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-------DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (337)
Q Consensus 162 ~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~~~~-------~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~ 234 (337)
++||.||++++ .+...+.++..++++++++..+|++. +++|.|+||++|||| ||.+++ |+
T Consensus 82 ~~if~QS~v~e--~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAAD--------ILl~~a---~~ 148 (314)
T COG0180 82 STIFLQSEVPE--HAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAAD--------ILLYQA---TL 148 (314)
T ss_pred cEEEEccCchH--HHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHH--------hhhccC---Ce
Confidence 99999999875 55666778899999999998888654 459999999999994 777777 78
Q ss_pred cccccCchhHHHHHHHHhhhhC------CCCceeeecc--eecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcC
Q 019674 235 IPCAIDQDPYFRMTRDVAPRIG------YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k~~------~~~p~~l~~~--~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t 306 (337)
||||.||+||+|||||||+||| +++|..+++. ++|||+|+ +|||||.|||+|+|+|+|++|++||++ |.|
T Consensus 149 VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~t 226 (314)
T COG0180 149 VPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AAT 226 (314)
T ss_pred eccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hcc
Confidence 9999999999999999999999 7899999988 99999998 899999999999999999999999999 888
Q ss_pred CCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 307 GGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 307 ~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
.| ++.+++++ ||+|++ ++|+|+.+|.
T Consensus 227 d~-~~~~~~~~-~g~Pe~~~l~~~~~~~~ 253 (314)
T COG0180 227 DG-PTLIEYRK-GGKPEVCNLFEIYSAFF 253 (314)
T ss_pred CC-CCccccCC-CCCCCcchHHHHHHHhc
Confidence 77 88999999 999999 9999998885
No 5
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.4e-57 Score=435.26 Aligned_cols=235 Identities=28% Similarity=0.384 Sum_probs=210.4
Q ss_pred hhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHH
Q 019674 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (337)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e 139 (337)
.+++||...... .++|.+.+++++++++|+|++||| .|||||+++++.++|||++ |++++|+|||+||++.++.+++
T Consensus 6 ~~~~~~~~e~~~-~~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~~ 82 (329)
T PRK08560 6 ELITRNTEEVVT-EEELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKA-GFKVTVLLADWHAYLNDKGDLE 82 (329)
T ss_pred HHHHhCceeecC-HHHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHC-CCeEEEEEccchhhcCCCCCHH
Confidence 345677655443 466777778789999999999999 5999999999999999996 8899999999999998768999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHh---hCCC-CCccccccchhhhhcC
Q 019674 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQAV 214 (337)
Q Consensus 140 ~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~---~g~~-~~~~~g~~~Yp~lQaa 214 (337)
++++++++++++|+|||+||+++.||.||+|+.+ .||..+++++++++++++.+. +++. ++.|+|+|+||+||||
T Consensus 83 ~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa 162 (329)
T PRK08560 83 EIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVA 162 (329)
T ss_pred HHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864 588999999999999999874 4443 3469999999999999
Q ss_pred CCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHH
Q 019674 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (337)
Q Consensus 215 d~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~ 294 (337)
|++.++++ +||+|.||+||+++|||+|+|+|+++|..+++++||+|+|+++|||||.|+++|||+|+|+
T Consensus 163 --------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~ 231 (329)
T PRK08560 163 --------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPE 231 (329)
T ss_pred --------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHH
Confidence 57888886 5899999999999999999999999999999999999999777999999888999999999
Q ss_pred HHHHHHhhcCcCCCC
Q 019674 295 AIKNKINKYAFSGGQ 309 (337)
Q Consensus 295 ~i~~KI~k~A~t~g~ 309 (337)
+|++||+| |||+++
T Consensus 232 ~I~~KI~k-A~t~~~ 245 (329)
T PRK08560 232 EIRRKIKK-AYCPPG 245 (329)
T ss_pred HHHHHHHh-ccCCCC
Confidence 99999999 999864
No 6
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.1e-56 Score=425.20 Aligned_cols=230 Identities=40% Similarity=0.599 Sum_probs=211.2
Q ss_pred eEEEecCCCCCCcchhhHHH-HHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~-~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
++|||++||| +|||||+++ +....+||++ |++++++|||+||++.+..+++++++++++++++|+|+|+||++++||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999999 899999999 7788899997 899999999999999765799999999999999999999999999999
Q ss_pred eCccccccccHHHHHHHHhhcCHHHHHHhhCCCC------CccccccchhhhhcCCCCCCCcCccccCCCCccccccccc
Q 019674 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (337)
Q Consensus 166 ~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~~~------~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~ 239 (337)
.||+|. .++...+.+++.++++++++..++++ +.|+|+|+||+||||| ++.+++ |+||+|.
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaD--------il~~~~---~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAAD--------ILLYKA---CLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhh--------hhhccC---CEEeecc
Confidence 999997 46777788999999999998877754 7899999999999995 677776 7899999
Q ss_pred CchhHHHHHHHHhhhhC------CCCceeeec--ceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCch
Q 019674 240 DQDPYFRMTRDVAPRIG------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 311 (337)
Q Consensus 240 DQd~~~~l~rdla~k~~------~~~p~~l~~--~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t 311 (337)
||+||++++||+|+|+| +++|..+++ ++||+|+|+++|||||.++|+|||+|+|++|++|||+ |+|+++.+
T Consensus 146 DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~ 224 (280)
T cd00806 146 DQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT 224 (280)
T ss_pred ccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc
Confidence 99999999999999999 789999998 9999999977899999997899999999999999999 99988765
Q ss_pred HHHHhhcCCCccc-hHHHHHHHHh
Q 019674 312 VELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 312 ~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
++++.+|+|++ ++++|+.+|.
T Consensus 225 --~~~~~~~~~~~~~l~~~~~~~~ 246 (280)
T cd00806 225 --EHRRDGGGPGVSNLVEIYSAFF 246 (280)
T ss_pred --eecCCCCCCCcChHHHHHHHHh
Confidence 77899999999 9999998774
No 7
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=5.2e-55 Score=421.78 Aligned_cols=235 Identities=37% Similarity=0.543 Sum_probs=209.5
Q ss_pred CceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~-~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
+|+++|+|++||| .|||||++++++.+++|++ |+.++|+|||+||+++++. +.+.++.++++++++|+|||+||+++
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q~-~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQF-GVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHhC-CCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4678999999999 7999999999988888865 8999999999999997653 78899999999999999999999999
Q ss_pred EEEeCccccccccHHHHHHHHhhcCHHHHHHhhCCCCC-----ccccccchhhhhcCCCCCCCcCccccCCCCccccccc
Q 019674 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-----DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (337)
Q Consensus 163 ~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~~~~-----~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~ 237 (337)
+||.||+|+ .++..++.+++++|++++.+..++++. .++|+|+||+||||| |+.+++| +||+
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaD--------il~~~~d---~vpv 145 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAAD--------ILLYQAD---LVPV 145 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhh--------hhhcCCC---eeec
Confidence 999999997 578888889999999999988766443 599999999999995 7778876 6999
Q ss_pred ccCchhHHHHHHHHhhhhC------CCCceeeecceecCCCCCC-CccCCCCCCCeEeccCCHHHHHHHHhhcCcCCC-C
Q 019674 238 AIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGET-GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG-Q 309 (337)
Q Consensus 238 G~DQd~~~~l~rdla~k~~------~~~p~~l~~~~lp~L~G~~-~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g-~ 309 (337)
|.||+||++||||+|+|+| +++|..++++++|.|.|.. +|||||.+||+|||+|+|++|++||++ |+|++ +
T Consensus 146 G~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~ 224 (328)
T TIGR00233 146 GIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGR 224 (328)
T ss_pred ccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCC
Confidence 9999999999999999999 6899999877766665532 699999999999999999999999999 99865 4
Q ss_pred chHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 310 ESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 310 ~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
.+.+++++.||||++ +.|+|+.+|.
T Consensus 225 ~~~~~~~~~~g~~~l~~i~~~~~~~~ 250 (328)
T TIGR00233 225 VTLFEHREKGGVPNLLVIYQYLSFFL 250 (328)
T ss_pred CcccCcCCCCCCchHHHHHHHhhccC
Confidence 788999999999999 8899988774
No 8
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-54 Score=416.96 Aligned_cols=229 Identities=26% Similarity=0.347 Sum_probs=196.8
Q ss_pred eEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 87 YLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
++|+|++|||. |||||+++++ .+| ||++ +.++++|||+||++++ .+++++++++++++++|+|||+||+|+.|
T Consensus 3 ~v~~G~~PTG~-lHLG~~~g~~-~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 3 RVLSGIQPTGK-LHLGNYLGAI-KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred EEEEeeCCCcc-chHHhHHHHH-HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 69999999995 9999999884 556 9996 5677888999999965 59999999999999999999999999999
Q ss_pred EeCcccccc--ccHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccc
Q 019674 165 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (337)
Q Consensus 165 ~~~s~~~~~--~~~~-----~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~ 237 (337)
|.||+|+++ .+|. .+.++.|..++++..+. +.+++|+|+|+||+||||| ++.+++ |+||+
T Consensus 78 f~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaaD--------il~~~~---divpv 144 (333)
T PRK00927 78 FVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLMAAD--------ILLYKA---DLVPV 144 (333)
T ss_pred EEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHHH--------HHhcCC---CEEee
Confidence 999999864 2332 24455666666554332 2367899999999999995 677776 57999
Q ss_pred ccCchhHHHHHHHHhhhhCC------CCceeeec---ceecCCCCCCCccCCCCCC--CeEeccCCHHHHHHHHhhcCcC
Q 019674 238 AIDQDPYFRMTRDVAPRIGY------HKPALIES---SFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFS 306 (337)
Q Consensus 238 G~DQd~~~~l~rdla~k~~~------~~p~~l~~---~~lp~L~G~~~KMSkS~~n--saI~L~D~p~~i~~KI~k~A~t 306 (337)
|.||+||++||||+|+|+|. ++|..+++ ++||||+|+++|||||.++ |+|||+|+|++|++||++ |+|
T Consensus 145 G~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~t 223 (333)
T PRK00927 145 GEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVT 223 (333)
T ss_pred ccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCC
Confidence 99999999999999999984 57877763 7899999977799999986 799999999999999999 999
Q ss_pred CCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 307 GGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 307 ~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
+++.+.+++++.||+|++ ++++|+++|.
T Consensus 224 d~~~~~~~~~~~~~~p~~~~l~~~~~~~~ 252 (333)
T PRK00927 224 DSERLREIRYDLPNKPEVSNLLTIYSALS 252 (333)
T ss_pred CCCcccccccCCCCCCccccHHHHHHHhC
Confidence 999988999999999999 9999999884
No 9
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1.9e-52 Score=404.41 Aligned_cols=229 Identities=27% Similarity=0.384 Sum_probs=191.7
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHH-hHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~-~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
.++|||++||| .|||||++++++.. +||++++ ++|+|||||+++++..+++++++++++++++|+|||+||++++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 36999999999 59999999976555 8999865 67888999999976689999999999999999999999999999
Q ss_pred EeCcccccc----ccHHH---HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccc
Q 019674 165 FSDFDYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (337)
Q Consensus 165 ~~~s~~~~~----~~~~~---~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~ 237 (337)
|.||+|.++ ++|.. +.++.|..++++.....++++++++|+++||+||||| |+.+++ |+|||
T Consensus 80 ~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaD--------Il~~~~---d~vpv 148 (333)
T PRK12282 80 FIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAAD--------ITAFKA---TLVPV 148 (333)
T ss_pred EECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHH--------HHhhCC---CEEEe
Confidence 999999763 23333 3455566666665555566678899999999999994 777876 57999
Q ss_pred ccCchhHHHHHHHHhhhhCC--CCceee-------ecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCC
Q 019674 238 AIDQDPYFRMTRDVAPRIGY--HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 308 (337)
Q Consensus 238 G~DQd~~~~l~rdla~k~~~--~~p~~l-------~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g 308 (337)
|.||+||++|+||+|+|+|. .+|..+ .+++||+|+|+ +|||||++| +|||+|+|++|++||++ |||++
T Consensus 149 G~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~ 225 (333)
T PRK12282 149 GDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDP 225 (333)
T ss_pred ccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCC
Confidence 99999999999999999993 333322 36799999884 799999965 99999999999999999 99976
Q ss_pred CchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 309 QESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 309 ~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
. ..+.+.||+|++ ++++|+++|.
T Consensus 226 ~---~~~~~~~~~~~~~~l~~~~~~f~ 249 (333)
T PRK12282 226 N---HIRVEDPGKVEGNVVFTYLDAFD 249 (333)
T ss_pred C---CccCCCCCCCCcChHHHHHHHhC
Confidence 3 245678999999 9999999983
No 10
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-51 Score=402.81 Aligned_cols=234 Identities=19% Similarity=0.269 Sum_probs=201.5
Q ss_pred hhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhH-HHHHHHHhHHhhCCceEEEEecCcccccccC--CC
Q 019674 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (337)
Q Consensus 61 l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~-l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~ 137 (337)
+++||.-... ..++|.+++++++++.+|+|++||| .|||||. +..+.+.+||++ |+.++++|||+||+++++ .+
T Consensus 43 ~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g~~ 119 (383)
T PTZ00126 43 LCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMGGD 119 (383)
T ss_pred HHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCCCC
Confidence 4567754333 4566677778889999999999999 5999994 454466779987 889999999999999765 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc---cccHHHHHHHHhhcCHHHHHHh---hCCC--CCccccccchh
Q 019674 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVSFP 209 (337)
Q Consensus 138 ~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~---~~~~~~~~~i~r~~t~~~~~~~---~g~~--~~~~~g~~~Yp 209 (337)
+++++++++++++.|+|+|+||+++.||.||+|.. ..||..++++++++|+++|++. +++. ++.++|+|+||
T Consensus 120 l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~YP 199 (383)
T PTZ00126 120 LEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILYP 199 (383)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhhhh
Confidence 99999999999999999999999999999998753 2689999999999999999753 4543 35689999999
Q ss_pred hhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCC-CCceeeecceecCCCCCCCccCCCCCCCeEe
Q 019674 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIY 288 (337)
Q Consensus 210 ~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~-~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 288 (337)
+||||| ++.+++| ++|+|.||+||++||||+|+++|+ ++|.++++++||||+++++|||||.+|++||
T Consensus 200 ~LQaaD--------il~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~ 268 (383)
T PTZ00126 200 CMQCAD--------IFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIF 268 (383)
T ss_pred HHHhhh--------hhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeec
Confidence 999995 7778887 489999999999999999999995 6888889999999976568999999999999
Q ss_pred ccCCHHHHHHHHhhcCcCCCC
Q 019674 289 VTDSAKAIKNKINKYAFSGGQ 309 (337)
Q Consensus 289 L~D~p~~i~~KI~k~A~t~g~ 309 (337)
|+|+|++|++|||+ |||+++
T Consensus 269 L~Dspe~I~kKI~k-A~t~p~ 288 (383)
T PTZ00126 269 MEDSEEDVNRKIKK-AYCPPG 288 (383)
T ss_pred CCCCHHHHHHHHHh-CcCCCC
Confidence 99999999999999 999754
No 11
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.2e-52 Score=390.02 Aligned_cols=206 Identities=25% Similarity=0.312 Sum_probs=191.4
Q ss_pred eEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 019674 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~---------~~~e~i~~~~~~~~~~ilA~G~ 157 (337)
++|+||+|||++|||||+++++.++|||++ |+.++|+|||+||+++++ .+++++++++++++++++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999978999999999999999997 899999999999999754 7999999999999999999999
Q ss_pred C--CCceEEEeCccccccccHHHHHHHHhhcCHHHHHHhhCC------CCCccccccchhhhhcCCCCCCCcCccccCCC
Q 019674 158 D--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (337)
Q Consensus 158 d--p~k~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~------~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~ 229 (337)
+ |+++.||.||+|+++.+|.+++++++++++++|.++.++ .+++++|+|+||+||||| ++.+++
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaD--------i~~l~~ 152 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYD--------FVYLDV 152 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh--------HHHHhC
Confidence 6 999999999999988899999999999999999987543 357899999999999995 777776
Q ss_pred CcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCe-EeccCCHHHHHHHHhhcCcCC
Q 019674 230 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSG 307 (337)
Q Consensus 230 d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsa-I~L~D~p~~i~~KI~k~A~t~ 307 (337)
|++|+|.||+||+++|||+|+|+++.+|..+++++||+|+| +|||||.+|+. |++.|+|++|++||++ |+|+
T Consensus 153 ---~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~ 225 (269)
T cd00805 153 ---DLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225 (269)
T ss_pred ---CeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH
Confidence 67999999999999999999999999999999999999998 79999999866 7999999999999999 9996
No 12
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-51 Score=395.42 Aligned_cols=227 Identities=18% Similarity=0.229 Sum_probs=191.6
Q ss_pred eeEEEecCCCCCCcchhhHHHHHH-HHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~-~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
.++|+|++||| .||||||++++. ..++|+.+|+.++++|||+||++. ..+++++++++++++++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 47999999999 699999999864 346888778889999999999873 479999999999999999999999999999
Q ss_pred EeCcccccc---ccHH----HHHHHHhhcCHHHHHHh-----hCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcc
Q 019674 165 FSDFDYVGG---AFYK----NMVKVAKCVTYNKVVGI-----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232 (337)
Q Consensus 165 ~~~s~~~~~---~~~~----~~~~i~r~~t~~~~~~~-----~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~ 232 (337)
|.||+++++ .|+. .+.++.|+.++++.... .|+++++|+|+++||+||||| |+.+++
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAAD--------Il~~~~--- 150 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAAD--------ILLFQA--- 150 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhh--------hhhccC---
Confidence 999998764 1222 13456677776665432 134456899999999999995 677777
Q ss_pred cccccccCchhHHHHHHHHhhhhC------CCCceee---ecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhc
Q 019674 233 CLIPCAIDQDPYFRMTRDVAPRIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 303 (337)
Q Consensus 233 c~vp~G~DQd~~~~l~rdla~k~~------~~~p~~l---~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~ 303 (337)
|+||||.||+||++||||+|+|+| +++|..+ +++++|+|+| +|||||.+| +|+|+|+|++|++||++
T Consensus 151 d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k- 226 (332)
T PRK12556 151 THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK- 226 (332)
T ss_pred CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-
Confidence 579999999999999999999999 5778776 6899999998 699999975 89999999999999999
Q ss_pred CcCCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 304 AFSGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 304 A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
|+|++.. .+.+|+|++ ++|+|+++|.
T Consensus 227 a~Td~~~-----~~~~~~p~~~~l~~i~~~~~ 253 (332)
T PRK12556 227 IKTDSSL-----PNEPKDPETSALFTIYKEFA 253 (332)
T ss_pred hccCCCc-----ccCCCCcchhHHHHHHHHHC
Confidence 9998754 245899999 9999999884
No 13
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-50 Score=401.80 Aligned_cols=230 Identities=22% Similarity=0.250 Sum_probs=202.2
Q ss_pred hhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccc------
Q 019674 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW------ 133 (337)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~------ 133 (337)
.|.+||+|++|+++++|.+.+++++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+.+.
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~-G~~~~~ligd~ta~igDpsgk~ 86 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDA-GHRPVILIGGFTGKIGDPSGKS 86 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHc-CCeEEEEEcccccccCCCCccc
Confidence 345699999999999999888888999999999999988999999999999999997 6677788888887764
Q ss_pred --cC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccccccHHHHH-HHHhhcCHHHHHHh------hCCCCCccc
Q 019674 134 --KN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI------FGFTGEDHI 203 (337)
Q Consensus 134 --r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~-~i~r~~t~~~~~~~------~g~~~~~~~ 203 (337)
|+ ++.+++++|+..+.+++.+ |+||+++.|++|++|+++..|..++ ++++++|+++|.++ ++.++++++
T Consensus 87 ~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~ 165 (410)
T PRK13354 87 KERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISF 165 (410)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCch
Confidence 33 7899999999877777666 8999999999999999888888888 59999999999864 222457899
Q ss_pred cccchhhhhcCCCCCCCcCccccCCCCccccc-ccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCC
Q 019674 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (337)
Q Consensus 204 g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~v-p~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~ 282 (337)
++|+||+||||| ++++..+++|.+ |+|.||++|+++|||+|+|+|..+|..++.|+|++++| +|||||.
T Consensus 166 ~ef~YpllQa~D--------~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~ 235 (410)
T PRK13354 166 TEFFYPLLQAYD--------FVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSA 235 (410)
T ss_pred hhhccHHHHhhh--------HHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--CccCCCC
Confidence 999999999995 666755556766 69999999999999999999999999899999999998 5999998
Q ss_pred CCCeEeccCC---HHHHHHHHhh
Q 019674 283 PNSAIYVTDS---AKAIKNKINK 302 (337)
Q Consensus 283 ~nsaI~L~D~---p~~i~~KI~k 302 (337)
+| +|||+|+ |+++++||++
T Consensus 236 ~n-aI~L~d~~tsp~~i~qki~~ 257 (410)
T PRK13354 236 GG-AIWLDPEKTSPYEFYQFWMN 257 (410)
T ss_pred CC-ceeccCCCCCHHHHHHHHHc
Confidence 65 9999999 9999999998
No 14
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=2.3e-51 Score=390.84 Aligned_cols=236 Identities=33% Similarity=0.489 Sum_probs=204.9
Q ss_pred hCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC--CCHHHHHHHHHHHHHH--HHHcCC
Q 019674 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGF 157 (337)
Q Consensus 82 ~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~~e~i~~~~~~~~~~--ilA~G~ 157 (337)
+++++++||||+|||. |||||+++++.+.|||++ |+.++|+|||+||+++++ .+++.++.++++++.. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg~-lHlG~l~~~~~~~~lq~~-g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGD-LHLGHLVPIMKLIWLQKA-GFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSSS--BHHHHHHHHHHHHHHHT-TSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCCc-ccchHHHHHHHHHHHHhc-CCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4588999999999996 999999999999999995 999999999999999876 4799999999999988 999999
Q ss_pred CCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhh------CCCCCccccccchhhhhcCCCCCCCcCccccCCCC
Q 019674 158 DVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (337)
Q Consensus 158 dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~------g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d 230 (337)
||+++.||.||+|.++ .++..+..+++..+++++.++. +.++++++|+|+||+|||| |++.++++
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~ 151 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD 151 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc
Confidence 9999999999999864 4555566677777777776543 3345899999999999999 58888886
Q ss_pred cccccccccCchhHHHHHHHHhhhhCCC----CceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcC
Q 019674 231 LRCLIPCAIDQDPYFRMTRDVAPRIGYH----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306 (337)
Q Consensus 231 ~~c~vp~G~DQd~~~~l~rdla~k~~~~----~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t 306 (337)
++|||.||++|+++|||+|+|+|.. +|+.++++++|+|+|. +|||||.+|++|||+|++++|++||++ |+|
T Consensus 152 ---~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~ 226 (292)
T PF00579_consen 152 ---LVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFC 226 (292)
T ss_dssp ---EEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHT
T ss_pred ---cccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-Hhh
Confidence 6899999999999999999999987 9999999999999994 499999999999999999999999999 999
Q ss_pred CCCchHHHHhhcCCCccc-h-HHHHHHHHh
Q 019674 307 GGQESVELHRKLGANLEV-L-EVLFLQIFT 334 (337)
Q Consensus 307 ~g~~t~e~~~~~ggn~~~-~-~~~~l~~f~ 334 (337)
++.. +.++..++.+.+ + .+.++..|.
T Consensus 227 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 254 (292)
T PF00579_consen 227 DPDR--ENPRLLKGRPFISPFLIERLEAFH 254 (292)
T ss_dssp STTS--HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCc--ccccccccCCCCCHHHHHHHHHhc
Confidence 9887 566778888888 5 666666553
No 15
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.2e-50 Score=395.27 Aligned_cols=229 Identities=21% Similarity=0.261 Sum_probs=200.1
Q ss_pred hhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCccccccc-----
Q 019674 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK----- 134 (337)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r----- 134 (337)
.|.+||+++.|+|++++++.++ ++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+++..
T Consensus 9 ~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~-G~~~~~ligd~ta~igDpsgk~ 86 (408)
T PRK05912 9 ELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA-GHKPIALIGGFTGMIGDPSGKS 86 (408)
T ss_pred HHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHC-CCcEEEEEcCceeEcCCCCCCc
Confidence 4555999999999999999988 5899999999999988999999999999999997 66788888999988852
Q ss_pred ---C-CCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEeCccccccccHHHHHH-HHhhcCHHHHHHhh------CCCCCc
Q 019674 135 ---N-LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIF------GFTGED 201 (337)
Q Consensus 135 ---~-~~~e~i~~~~~~~~~~ilA~G~dp~k--~~I~~~s~~~~~~~~~~~~~-i~r~~t~~~~~~~~------g~~~~~ 201 (337)
+ ++.+++++|+.. +...+|+|+||++ +.||+||+|.++..+..+++ +++++|+++|.++. +..+++
T Consensus 87 ~~r~~l~~e~i~~n~~~-i~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~i 165 (408)
T PRK05912 87 ETRKLLTREQVAENAET-IKEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQGI 165 (408)
T ss_pred hhhccCCHHHHHHHHHH-HHHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCCC
Confidence 2 588899999965 4666799999999 99999999998877888888 99999999998653 223579
Q ss_pred cccccchhhhhcCCCCCCCcCccccCCCCccccc-ccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCC
Q 019674 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 280 (337)
Q Consensus 202 ~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~v-p~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSk 280 (337)
|+|+|+||+||||| ++.+..+++|.+ |+|.||++|+++|||+|+|+|.+++..++.|+||+++| +||||
T Consensus 166 s~~ef~Yp~LQa~D--------~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G--~KMsK 235 (408)
T PRK05912 166 SFTEFLYPLLQGYD--------FVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG--KKMGK 235 (408)
T ss_pred chhhhhhHHHHHhh--------HHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC--CcccC
Confidence 99999999999995 666745566655 57999999999999999999988888888999999988 89999
Q ss_pred CCCCCeEeccC---CHHHHHHHHhh
Q 019674 281 SDPNSAIYVTD---SAKAIKNKINK 302 (337)
Q Consensus 281 S~~nsaI~L~D---~p~~i~~KI~k 302 (337)
|. +++|||+| +|+++++||++
T Consensus 236 S~-~naI~L~d~~tsp~~i~qki~~ 259 (408)
T PRK05912 236 SE-GNAVWLDEEKTSPYEMYQKWMN 259 (408)
T ss_pred CC-CCceeCCCCCCCHHHHHHHHhc
Confidence 98 55999999 99999999998
No 16
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.1e-50 Score=379.86 Aligned_cols=206 Identities=21% Similarity=0.289 Sum_probs=184.4
Q ss_pred eEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 019674 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~---------~~~e~i~~~~~~~~~~ilA~G~ 157 (337)
.+|+||+|||++|||||+++++.++|||++ |+.++++|||+||++.++ ++.+++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~-g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHA-GHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHC-CCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 389999999978999999999999999996 778899999999998643 2899999999999999999999
Q ss_pred C--CCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhhCCC----CCccccccchhhhhcCCCCCCCcCccccCCCC
Q 019674 158 D--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (337)
Q Consensus 158 d--p~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~g~~----~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d 230 (337)
| |+++.||.||+|.+. .++..+..+++++++++|+++.+++ +++++|+|+||+||||| +++++++
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaaD--------~l~l~~~ 151 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAAD--------FLLLNTT 151 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHHH--------HHHHhcc
Confidence 9 999999999999864 5666666799999999999987653 47999999999999995 7778777
Q ss_pred ccc-ccccccCchhHHHHHHHHhhhhC-CCCceeeecceecCCCCCCCccCCCCCCCeEe---ccCCHHHHHHHHhhcCc
Q 019674 231 LRC-LIPCAIDQDPYFRMTRDVAPRIG-YHKPALIESSFFPALQGETGKMSASDPNSAIY---VTDSAKAIKNKINKYAF 305 (337)
Q Consensus 231 ~~c-~vp~G~DQd~~~~l~rdla~k~~-~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~---L~D~p~~i~~KI~k~A~ 305 (337)
.+| ++|+|.||+||+++|||+|+|+| .++|..++.++||+|+| .|||||.+| +|| +.|+|++|++||++ |+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~-~i~l~~~~dsp~~i~~ki~~-a~ 227 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESG-PKWLDTEKTSPYEFYQFWIN-AV 227 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCCCC-CccccccCCCHHHHHHHHHc-cc
Confidence 778 88999999999999999999997 57899999999999999 599999987 666 58999999999999 87
No 17
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.2e-50 Score=390.34 Aligned_cols=228 Identities=21% Similarity=0.311 Sum_probs=192.3
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
..+|+|++||| .||||||++++ .+| ||+ ++.++++|||+||++. ..+++++++++++++++|+|||+||+|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai-~~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAI-KNWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHH-HHHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 36999999999 69999999884 455 998 4567888899999996 46999999999999999999999999999
Q ss_pred EEeCcccccc--ccHHH-----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccc
Q 019674 164 IFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (337)
Q Consensus 164 I~~~s~~~~~--~~~~~-----~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp 236 (337)
||.||++.++ .+|.. +.++.|+.+++++.+..+ .+++++|.|+||+|||| |||.++++ +||
T Consensus 122 if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VP 189 (389)
T PLN02886 122 VFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVP 189 (389)
T ss_pred EEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEE
Confidence 9999998864 34432 458899999999877664 35689999999999999 57888886 599
Q ss_pred cccCchhHHHHHHHHhhhhCC------------------CCceeee---cceecCCCCCCCccCCCCCC--CeEeccCCH
Q 019674 237 CAIDQDPYFRMTRDVAPRIGY------------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSA 293 (337)
Q Consensus 237 ~G~DQd~~~~l~rdla~k~~~------------------~~p~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~p 293 (337)
||.||+||++||||+|+|||. +.|..++ +.+||+|+|+.+|||||.|| |+|+|+|+|
T Consensus 190 VG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~ 269 (389)
T PLN02886 190 VGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPP 269 (389)
T ss_pred EccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCH
Confidence 999999999999999999984 3566665 45899999877899999974 799999999
Q ss_pred HHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHH
Q 019674 294 KAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQIF 333 (337)
Q Consensus 294 ~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f 333 (337)
++|++||++ |+|+++.+++. ..+++|++ +.+.++..|
T Consensus 270 e~I~kKI~~-a~TD~~~~i~~--~~p~~p~v~nl~~i~~~~ 307 (389)
T PLN02886 270 DVIANKIKR-CKTDSFPGLEF--DNPERPECNNLLSIYQLV 307 (389)
T ss_pred HHHHHHHhc-CCCCCCCCccC--CCCCCcccccHHHHHHHc
Confidence 999999999 99998876654 55677777 666665544
No 18
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-50 Score=390.41 Aligned_cols=227 Identities=20% Similarity=0.265 Sum_probs=190.5
Q ss_pred eEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 019674 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~ 166 (337)
.+|+|++||| .||||||+++ +.+|.+-..+..++++|||+||++.+..+++++++++++++++|+|||+||+|+.||.
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~-ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGV-LKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHH-HHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 5999999999 6999999998 5788543336678889999999997667999999999999999999999999999999
Q ss_pred Ccccccc--ccHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccccc
Q 019674 167 DFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (337)
Q Consensus 167 ~s~~~~~--~~~~-----~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~ 239 (337)
||+++++ .+|. .+.++.|++++++...+.+..++.++|.++||+|||| |||.++++ +||||.
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a~---iVPVG~ 150 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRAG---LVPVGE 150 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCCC---Eeeecc
Confidence 9999864 2232 2455666777766554432235789999999999999 57888875 699999
Q ss_pred CchhHHHHHHHHhhhhCC--------------------------------------------------------------
Q 019674 240 DQDPYFRMTRDVAPRIGY-------------------------------------------------------------- 257 (337)
Q Consensus 240 DQd~~~~l~rdla~k~~~-------------------------------------------------------------- 257 (337)
||+||++||||+|+|||.
T Consensus 151 DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (398)
T PRK12283 151 DQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRE 230 (398)
T ss_pred ccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhc
Confidence 999999999999999764
Q ss_pred --------------CCcee--eecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCC
Q 019674 258 --------------HKPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 321 (337)
Q Consensus 258 --------------~~p~~--l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn 321 (337)
+.|.. .++++||||+| +|||||.+| +|+|+|+|++|++||++ |+| ||.++++.+||+
T Consensus 231 ~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~~-a~T---Ds~~~~~~~~g~ 303 (398)
T PRK12283 231 RLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSYGN-TIGLREDPESVTKKIRT-MPT---DPARVRRTDPGD 303 (398)
T ss_pred cccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCCCC-eeeCcCCHHHHHHHHHh-CCC---CCcccccCCCCC
Confidence 23333 23689999988 799999764 99999999999999999 999 788889999999
Q ss_pred ccc-hHHHHHHHH
Q 019674 322 LEV-LEVLFLQIF 333 (337)
Q Consensus 322 ~~~-~~~~~l~~f 333 (337)
|++ ++++++.+|
T Consensus 304 Pe~~nl~~i~~~~ 316 (398)
T PRK12283 304 PEKCPVWQLHQVY 316 (398)
T ss_pred CCcCHHHHHHHHh
Confidence 999 999998887
No 19
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.6e-48 Score=401.69 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=211.0
Q ss_pred hhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhH-HHHHHHHhHHhhCCceEEEEecCcccccccC--CC
Q 019674 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (337)
Q Consensus 61 l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~-l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~ 137 (337)
+++|+.-... ..++|.+.+++|+++++|+|++||| .|||||+ +.++....++++ |+.++++||||||+++.+ .+
T Consensus 9 ll~r~~~Evi-~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q~-g~~~~~lIAD~HAlt~~~~~~~ 85 (682)
T PTZ00348 9 LLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQA-GCEFVFWVADWFALMNDKVGGE 85 (682)
T ss_pred HHhcCceeec-CHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHhC-CCeEEEEEcchhhhcCCCCCCC
Confidence 4556653332 4566667778888999999999999 5999994 455433334554 788999999999999654 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc-cc--ccHHHHHHHHhhcCHHHHHHh---hCCCC-Cccccccchhh
Q 019674 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVSFPP 210 (337)
Q Consensus 138 ~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~-~~--~~~~~~~~i~r~~t~~~~~~~---~g~~~-~~~~g~~~Yp~ 210 (337)
+++++.+++++++.|+|+|+||+++.||.||+|. ++ .+|..++.+++++|++++++. +|+.+ ++++|+++||+
T Consensus 86 l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPv 165 (682)
T PTZ00348 86 LEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPL 165 (682)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhH
Confidence 9999998899999999999999999888899754 43 678889999999999999885 45544 58999999999
Q ss_pred hhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCC-CCceeeecceecCCCCCCCccCCCCCCCeEec
Q 019674 211 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 211 lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~-~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
||||| ++.+++| ++|+|.||+||++|+||+|+++|. ++|..+++++||||+|+++|||||.|+|+|||
T Consensus 166 LQAAD--------Il~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L 234 (682)
T PTZ00348 166 MQCAD--------IFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 234 (682)
T ss_pred HHhhc--------ccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecc
Confidence 99995 6778887 489999999999999999999995 47888889999999976689999998889999
Q ss_pred cCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCc----cc-hHHHHHHHHh
Q 019674 290 TDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EV-LEVLFLQIFT 334 (337)
Q Consensus 290 ~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~----~~-~~~~~l~~f~ 334 (337)
+|+|++|++||++ |||++...-......+|+| +. +.+.|+++|.
T Consensus 235 ~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~i 283 (682)
T PTZ00348 235 EDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVV 283 (682)
T ss_pred cCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHh
Confidence 9999999999999 9996531101223668888 66 7778888763
No 20
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-48 Score=379.20 Aligned_cols=227 Identities=21% Similarity=0.194 Sum_probs=187.2
Q ss_pred ceeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 85 ~~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
..++|+|++||| .||||||++++ .+| +|+..++.++++|||+||++ +..+++++++++++++++|+|||+||+|+
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGai-k~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~ 78 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAI-RPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERV 78 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHH-HHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 357999999999 69999999995 334 65545788899999999999 45899999999999999999999999999
Q ss_pred EEEeCcccccc--ccHHH-----HHHHHhhcCHHHHHHhh---CCC--CCccccccchhhhhcCCCCCCCcCccccCCCC
Q 019674 163 FIFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (337)
Q Consensus 163 ~I~~~s~~~~~--~~~~~-----~~~i~r~~t~~~~~~~~---g~~--~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d 230 (337)
.||.||+++++ .+|.. +.++.|+.++++..... |++ +++++|.|+||+|||| ||+.++++
T Consensus 79 ~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad 150 (431)
T PRK12284 79 TFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH 150 (431)
T ss_pred EEEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC
Confidence 99999999864 33322 35677777777654332 332 4589999999999999 57888885
Q ss_pred cccccccccCchhHHHHHHHHhhhhCC-------CCceeee---cceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHH
Q 019674 231 LRCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300 (337)
Q Consensus 231 ~~c~vp~G~DQd~~~~l~rdla~k~~~-------~~p~~l~---~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI 300 (337)
+||||.||+||++||||+|+|||+ +.|..+. +++||||+| +|||||.+| +|+|+|+|++|++||
T Consensus 151 ---~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI 224 (431)
T PRK12284 151 ---KVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYDN-TIPLFAPREELKKAI 224 (431)
T ss_pred ---EEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCCCC-EeeecCCHHHHHHHH
Confidence 599999999999999999999983 2454433 689999998 799999965 999999999999999
Q ss_pred hhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 301 NKYAFSGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 301 ~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
++ |+|+++.+. .+++|++ +.+.|+++|.
T Consensus 225 ~~-A~TDs~~~~-----~~~~pe~snLl~i~~~~~ 253 (431)
T PRK12284 225 FS-IVTDSRAPG-----EPKDTEGSALFQLYQAFA 253 (431)
T ss_pred hc-CCCCCCCCC-----CCCCCCcchHHHHHHHhC
Confidence 99 999866432 3588999 8999999874
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.7e-46 Score=368.60 Aligned_cols=232 Identities=24% Similarity=0.270 Sum_probs=199.7
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--- 135 (337)
..+.+||++...++.+.+.+.+++ ++++|+||+|||++|||||+++++.+++||++ |+.++++|||+|++++++
T Consensus 6 ~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~-G~~~~iligd~ta~igdpsg~ 82 (377)
T TIGR00234 6 LLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQA-GHEVIVLLGDATALIGDPSGK 82 (377)
T ss_pred HHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEeccchhhcCCCCh
Confidence 456789999999988877776655 89999999999988999999999999999997 778888899999998754
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhhCC----CCCcccc
Q 019674 136 ------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGF----TGEDHIG 204 (337)
Q Consensus 136 ------~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~g~----~~~~~~g 204 (337)
++.+++++|+ ++++.++|+|+||+++.|+.||+|... .|+..+.++++++|+++|+++.++ +++++++
T Consensus 83 ~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ 161 (377)
T TIGR00234 83 SEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLS 161 (377)
T ss_pred HHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCch
Confidence 5677777777 678899999999999999999999865 455556669999999999998654 2479999
Q ss_pred ccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCC
Q 019674 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (337)
Q Consensus 205 ~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~n 284 (337)
+|+||+|||| |++++++| ++++|.||++|++.+||+|+|++...+..++.+++++++| .|||||.+|
T Consensus 162 ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~KmgKS~~~ 228 (377)
T TIGR00234 162 EFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMGKSGGG 228 (377)
T ss_pred hhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCccCCCCC
Confidence 9999999999 57888887 5899999999999999999999987788888899999986 899999754
Q ss_pred CeEeccC-----------CHHHHHHHHhhcCcCCCC
Q 019674 285 SAIYVTD-----------SAKAIKNKINKYAFSGGQ 309 (337)
Q Consensus 285 saI~L~D-----------~p~~i~~KI~k~A~t~g~ 309 (337)
+||+++ +|+++.+||+| |||...
T Consensus 229 -~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~ 262 (377)
T TIGR00234 229 -AVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLG 262 (377)
T ss_pred -cccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCc
Confidence 555555 49999999999 999754
No 22
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-42 Score=339.49 Aligned_cols=234 Identities=24% Similarity=0.304 Sum_probs=197.3
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CC
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~ 137 (337)
..|+.||++....+.+.+.+.++++ ++.+|+||||||+++||||+++++++++||++ |+.++++|||+|++++++ ..
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk 84 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDA-GHKPIVLIGDATAMIGDPSGK 84 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHC-CCeEEEEecccceecCCCCCC
Confidence 4578899999999988888888875 99999999999999999999999999999998 888889999999999888 88
Q ss_pred HHHHHHHHH----HHHHHHH-HcCCCCC-ceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhhCC------CCCcccc
Q 019674 138 VEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIG 204 (337)
Q Consensus 138 ~e~i~~~~~----~~~~~il-A~G~dp~-k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~g~------~~~~~~g 204 (337)
.++++..++ +|++.+. ++|.+++ ++.+.+||+|... .|+..+.++++++|+++|+++..+ ++++++.
T Consensus 85 ~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~ 164 (401)
T COG0162 85 SEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFT 164 (401)
T ss_pred HHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchh
Confidence 888877775 5555555 4676666 9999999999875 555556669999999999987532 3479999
Q ss_pred ccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCC
Q 019674 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (337)
Q Consensus 205 ~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~n 284 (337)
+|+||+|||| |+++|++| +..+|.||+.++.+|||+++|+|.+++.+++.|+|++++| +|||||.+|
T Consensus 165 Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~KmgKs~~~ 231 (401)
T COG0162 165 EFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMGKSEGG 231 (401)
T ss_pred hhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--CcccccCCC
Confidence 9999999999 58889987 3458888888888899999999999999999999999999 588888765
Q ss_pred CeEecc----------CCHHHHHHHHhhcCcCCCC
Q 019674 285 SAIYVT----------DSAKAIKNKINKYAFSGGQ 309 (337)
Q Consensus 285 saI~L~----------D~p~~i~~KI~k~A~t~g~ 309 (337)
++|++ +.+..|..|+++ +||...
T Consensus 232 -a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~ 264 (401)
T COG0162 232 -AVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLL 264 (401)
T ss_pred -ceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHh
Confidence 55554 456789999999 999644
No 23
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-41 Score=311.39 Aligned_cols=228 Identities=23% Similarity=0.331 Sum_probs=185.5
Q ss_pred ceeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCC--ceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 019674 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 85 ~~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~--~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (337)
+-++++|++||| ++|||||++. +..| ||+..+ ..+.+.|+|.||++. +.++.+++++..++++.++|||+||+
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGa-i~~Wv~LQ~~~d~~~~~~f~vvDlHaITv-p~dp~~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGA-IKPWVQLQNEYDKNILVLFSVVDLHAITV-PQDPAELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred cceeEeccCCCC-Cchhhhhhhh-hhHHHHHHHHhcCCceEEEEEeeceeecC-CCChHHHHHHHHHHHHHHHHhccCcc
Confidence 567999999998 8999999999 6778 888753 346667999999985 44556999999999999999999999
Q ss_pred ceEEEeCcccccc---ccHHH----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccc
Q 019674 161 KTFIFSDFDYVGG---AFYKN----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (337)
Q Consensus 161 k~~I~~~s~~~~~---~~~~~----~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c 233 (337)
|+.+|.||++++| .|+.. +.+++|+..+++..++.+ ....++|.|+||+|||| ||+.++++
T Consensus 90 Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYksT--- 157 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKST--- 157 (347)
T ss_pred cceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhccc---
Confidence 9999999999875 44442 567888888888776543 35689999999999999 57888875
Q ss_pred ccccccCchhHHHHHHHHhhhhCC-------CCceeee---cceecCCCCCCCccCCCCCC--CeEeccCCHHHHHHHHh
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKIN 301 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~~~-------~~p~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~p~~i~~KI~ 301 (337)
.||||.||-||++|+|++|+++|. +.|..+. +..+.+|..|.+|||||+|| +.|.|+|+|+.|.+||+
T Consensus 158 hVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ 237 (347)
T KOG2713|consen 158 HVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIK 237 (347)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHH
Confidence 599999999999999999999995 4565554 67899999999999999985 69999999999999999
Q ss_pred hcCcCCCCchHHHHhhcCCCccc-hHHHHH
Q 019674 302 KYAFSGGQESVELHRKLGANLEV-LEVLFL 330 (337)
Q Consensus 302 k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l 330 (337)
| |.|+-- .+.--..++.|.+ +....+
T Consensus 238 k-a~TD~~--~~vtYd~~~RpgvsNLlni~ 264 (347)
T KOG2713|consen 238 K-AQTDNT--SGVTYDPANRPGVSNLLNIY 264 (347)
T ss_pred H-Hhcccc--cceeeCCccccchhHHHHHH
Confidence 9 999622 2221233456666 544433
No 24
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-39 Score=300.43 Aligned_cols=240 Identities=21% Similarity=0.253 Sum_probs=193.7
Q ss_pred HHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHH
Q 019674 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDI 152 (337)
Q Consensus 74 ~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~i 152 (337)
++|.+.+++ +.+.+|+|+.||| .||+|.++|++.++.|-+| ||.|.|++|||||++++. .+++.+..++.++-+.|
T Consensus 24 e~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkA-GC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~I 100 (360)
T KOG2144|consen 24 EELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKA-GCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEI 100 (360)
T ss_pred HHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhc-CCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 344444455 7789999999999 5999999999999999987 999999999999999877 88888888877665555
Q ss_pred HH----cCCCCCceEEEeCcccc-ccccHHHHHHHHhhcCHHHHHHh--hCCC--CCccccccchhhhhcCCCCCCCcCc
Q 019674 153 IA----CGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNKVVGI--FGFT--GEDHIGKVSFPPVQAVPSFPSSFPH 223 (337)
Q Consensus 153 lA----~G~dp~k~~I~~~s~~~-~~~~~~~~~~i~r~~t~~~~~~~--~g~~--~~~~~g~~~Yp~lQaad~~~~~f~d 223 (337)
.| .+.+.++.....-+++- ...|-+++.++++.+|-...+.. .+.+ +..+++.+.||+|||+|
T Consensus 101 k~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~llYP~MQalD-------- 172 (360)
T KOG2144|consen 101 KAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLLYPGMQALD-------- 172 (360)
T ss_pred HHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhhhhhHHHhh--------
Confidence 43 34455555333334443 34566777888888887776653 2332 56788999999999995
Q ss_pred cccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhc
Q 019674 224 LFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 303 (337)
Q Consensus 224 i~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~ 303 (337)
+++|.+|. .++|.||+..+.++|++++-+|++||.+++++++|||++ |+|||||+++|+|+|.|+|++|.+||+|
T Consensus 173 e~~L~vD~---qfgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k- 247 (360)
T KOG2144|consen 173 EFYLEVDA---QFGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK- 247 (360)
T ss_pred HHHHhhhH---HhcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-
Confidence 67788884 479999999999999999999999999999999999997 6999999999999999999999999999
Q ss_pred CcCCCC------------------------chHHHHhhcCCCccchHHHH
Q 019674 304 AFSGGQ------------------------ESVELHRKLGANLEVLEVLF 329 (337)
Q Consensus 304 A~t~g~------------------------~t~e~~~~~ggn~~~~~~~~ 329 (337)
|||.++ ..+.+.+++|||.++.+|+-
T Consensus 248 AfCePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed 297 (360)
T KOG2144|consen 248 AFCEPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYED 297 (360)
T ss_pred hcCCCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHH
Confidence 999753 34556778888887777654
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.5e-34 Score=294.80 Aligned_cols=280 Identities=16% Similarity=0.174 Sum_probs=208.3
Q ss_pred ccHHHHHHHhCCCCCCHH-----HHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhh---CC---ceeEEEecCCCC
Q 019674 28 IDYDKLIDKFGCQRLDQS-----LVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK---GE---KFYLYTGRGPSS 96 (337)
Q Consensus 28 ~dy~kl~~~fg~~~i~~~-----~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~---~~---~~~vytG~~PTg 96 (337)
-+|+.|.+.|....+... +.+.+.+.+.+- |--+....+..+++..+++ +. ++....=..-+
T Consensus 299 ~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PI------Re~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 371 (682)
T PTZ00348 299 ATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPV------RQHFASNPEAHELLEAVKSYRKGGATLPLAETALPAAP- 371 (682)
T ss_pred CcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH------HHHHHcChhHHHHHHHHHHHhcCCCCCCchhccCcCCC-
Confidence 458899999977776633 223333332221 2233445666666666544 11 11111111111
Q ss_pred CCcchhhHHHH-------------H-HHHhHHhhCCceEEEEecCcccccccC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 019674 97 EALHLGHLVPF-------------M-FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 97 ~slHlGh~l~~-------------~-~~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (337)
.++|.--+.|. . ....|+++.||.++|+||||||+++++ .++++|++.++++++.|.|+|+|++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~ 451 (682)
T PTZ00348 372 EKPHACMWMPALIKVPLDVAEGMIDATKDFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE 451 (682)
T ss_pred CCchhheeccccccchHHHHHHHHHHHHHHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 13444323222 0 113477778999999999999999987 9999999999999999999999998
Q ss_pred ce-EEEeCcccccc--ccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccc
Q 019674 161 KT-FIFSDFDYVGG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (337)
Q Consensus 161 k~-~I~~~s~~~~~--~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~ 237 (337)
+ |||.+..+.++ +||..+++++|++|++++++.+| .+..+++++.||+|||+ |++++++|+ .++
T Consensus 452 -v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~di---~~g 518 (682)
T PTZ00348 452 -VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSASH---VIS 518 (682)
T ss_pred -cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCCe---eec
Confidence 7 55555444442 89999999999999999999987 56669999999999999 588899985 579
Q ss_pred ccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCC--------
Q 019674 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-------- 309 (337)
Q Consensus 238 G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~-------- 309 (337)
|+||+..++||||++++.. +|...++.++|+|.++..+|++|.++|+|||+|++++|++||+| |||+++
T Consensus 519 G~DQRki~mlAre~~~~~~--~~~~~~~~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~~~Npvl~ 595 (682)
T PTZ00348 519 TSLDGGINEFAREYTKGRI--ECIQALEGRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPVIS 595 (682)
T ss_pred ChhHHHHHHHHHHhccccc--cchhhcCCCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCCCCCcHHH
Confidence 9999999999999999644 44556788899999877899999889999999999999999999 999743
Q ss_pred -----------chHHHHhhcCCCccchHHHHH
Q 019674 310 -----------ESVELHRKLGANLEVLEVLFL 330 (337)
Q Consensus 310 -----------~t~e~~~~~ggn~~~~~~~~l 330 (337)
.++++.+++|||.++.+|.-|
T Consensus 596 ~~~y~~~~~~~~~i~R~e~~Gg~~~y~s~eeL 627 (682)
T PTZ00348 596 VAQHLLAQQGALSIERGEANGGNVAYNTPEAL 627 (682)
T ss_pred HHHHHhcCCCeEEEecccccCCCeeeCCHHHH
Confidence 566677778888877555443
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-34 Score=272.72 Aligned_cols=236 Identities=17% Similarity=0.221 Sum_probs=172.3
Q ss_pred hhhhhcCcccccCCHH---HHHHHH-hhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEE------ecCc
Q 019674 59 HVFLRRGVFFAHRDLN---DILDAY-EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDD 128 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~---~ll~~~-~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~------IaD~ 128 (337)
..+..||+| ++.-.+ ...+.+ .++-|.+||+|||||++|||+||++++|-+-|+|++++.++.++ ||||
T Consensus 34 ~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 34 TELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDP 112 (467)
T ss_pred HHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCC
Confidence 345669998 333222 233444 35558999999999999999999999999999999866666654 7888
Q ss_pred cc-ccccC-CCHHHHHHHHHHHHHHHH---H-------cCCCCCceEEEeCccccccccHHHHH-HHHhhcCHHHHHHh-
Q 019674 129 EK-CMWKN-LSVEESQRLARENAKDII---A-------CGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI- 194 (337)
Q Consensus 129 ~a-~~~r~-~~~e~i~~~~~~~~~~il---A-------~G~dp~k~~I~~~s~~~~~~~~~~~~-~i~r~~t~~~~~~~- 194 (337)
++ .++|+ +..+.+++|++..-..+. + +|..-.+-+|++|++|.+..-..+++ ++++++++..|.++
T Consensus 113 SGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~ 192 (467)
T KOG2623|consen 113 SGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARD 192 (467)
T ss_pred CCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHH
Confidence 84 45566 667777777754433333 2 23333466999999998765555554 48888888888775
Q ss_pred -----hCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccc-ccCchhHHHHHHHHhhhhCCC--Cceeeecc
Q 019674 195 -----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYH--KPALIESS 266 (337)
Q Consensus 195 -----~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~-G~DQd~~~~l~rdla~k~~~~--~p~~l~~~ 266 (337)
+..++++|++||+|++||||| ++++..+++|-+|+ |.||.+++..+.|+++|+-.. .+..++.|
T Consensus 193 SV~~RLes~~GlSftEFtYQ~lQAYD--------fy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~P 264 (467)
T KOG2623|consen 193 SVKSRLESPNGLSFTEFTYQLLQAYD--------FYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFP 264 (467)
T ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHh--------HHHHHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeee
Confidence 445679999999999999995 77788889999985 555666666689999997542 23344444
Q ss_pred eecCCCCCCCccCCCCCCCeEeccCC--------------HHHHHHHHhhcCcCC
Q 019674 267 FFPALQGETGKMSASDPNSAIYVTDS--------------AKAIKNKINKYAFSG 307 (337)
Q Consensus 267 ~lp~L~G~~~KMSkS~~nsaI~L~D~--------------p~~i~~KI~k~A~t~ 307 (337)
+|..-+| .|++||.+| ||||+.+ |++-..|..| .||-
T Consensus 265 LlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~~pDd~v~k~Lk-lfTf 315 (467)
T KOG2623|consen 265 LLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFASLPDDDVEKFLK-LFTF 315 (467)
T ss_pred eEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHhCchhHHHHHHH-HHhc
Confidence 4444454 899999988 9999875 7777788888 8884
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.42 E-value=7e-13 Score=113.38 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=54.3
Q ss_pred hhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCC-CceeeecceecCCCCCCCccCCCC
Q 019674 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 282 (337)
Q Consensus 208 Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~-~p~~l~~~~lp~L~G~~~KMSkS~ 282 (337)
|++.|+|| ++.+..+..+++++|.||.+|++.+++++++++.+ +|..++..+|++..| +|||||.
T Consensus 78 y~~~~~a~--------~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAAD--------FLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHHH--------HHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 99999996 45555544466789999999999999999999764 688888999988876 7999994
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.24 E-value=6.1e-11 Score=110.17 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=118.3
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~-------I 164 (337)
.||| .|||||+..+ +..| +.+..|..+++-|.|.- ...+. .+....+.+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~a-l~n~l~ar~~~G~~ilRieDtd----~~r~~---~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTA-LFNYLFARKHGGKFILRIEDTD----QERSV---PEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHH-HHHHHHHHHcCCeEEEEECcCC----CCCCc---hHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 4678 6999999999 4555 44445667777788832 12222 2344466777788999998742 7
Q ss_pred EeCccccccccHHHHH-HHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchh
Q 019674 165 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (337)
Q Consensus 165 ~~~s~~~~~~~~~~~~-~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~ 243 (337)
|.||+-. ..|..++ ++- + .| -|..+|++-+++| |.+ .+. +.|+.|.|+..
T Consensus 80 ~~QS~r~--~~y~~~~~~L~---------~-~g------dg~ptY~~a~~vD-------D~~-~~i---thViRG~D~~~ 130 (239)
T cd00808 80 YRQSERL--EIYRKYAEKLL---------E-KG------DGFPTYHLANVVD-------DHL-MGI---THVIRGEEHLS 130 (239)
T ss_pred EeeeCCH--HHHHHHHHHHH---------H-cC------CCCcccccHHHHh-------HHh-cCC---CEEEEChhhhh
Confidence 7787643 3333332 221 1 11 2778999999997 654 444 35899999999
Q ss_pred HHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEecc----CCHHHHHHHHhh
Q 019674 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK 302 (337)
Q Consensus 244 ~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~----D~p~~i~~KI~k 302 (337)
+....+.+++.+|.+.|...|.+++++.+| .||||+.++.+|--. -+|+.|..-+..
T Consensus 131 ~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 131 STPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred ChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999998888888888877 899999876444321 357777766654
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.98 E-value=7.3e-09 Score=106.22 Aligned_cols=208 Identities=18% Similarity=0.243 Sum_probs=116.3
Q ss_pred HHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHH----HHHHhHHhhCCceEE-EEecCcccccccC---CCH-HHH--
Q 019674 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF----MFTKYLQDAFKVPLV-IQLTDDEKCMWKN---LSV-EES-- 141 (337)
Q Consensus 73 ~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~----~~~~~lQ~~~~~~v~-I~IaD~~a~~~r~---~~~-e~i-- 141 (337)
.++|++...++.++.+=||+.||| .+||||+-.. ++.+++... |.++. |..+|+|.-+.+- ++. +++
T Consensus 12 A~~~~~r~~~~~~~~~~~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~-G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~ 89 (510)
T PRK00750 12 AEKIIKRLGKKPPVVVETGIGPSG-LPHIGNFREVARTDMVRRALRDL-GIKTRLIFFSDDMDGLRKVPDNVPNQEMLEE 89 (510)
T ss_pred HHHHHHhcCCCCcEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHc-CCcEEEEEEEecCCcccccCCCCCchHHHHH
Confidence 345555444444588999999998 7999998644 244556665 65554 4578999533110 111 111
Q ss_pred ----------------HHHHH----HHHHHHHHcCCCCCceEEEeCccccccccHHHHHH--HHhhcCHHHHHHhh-CCC
Q 019674 142 ----------------QRLAR----ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GFT 198 (337)
Q Consensus 142 ----------------~~~~~----~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~--i~r~~t~~~~~~~~-g~~ 198 (337)
+.++. ...+.+-.+|++.+ ++.+++...+.-|...++ +.++=.+.++...+ |.+
T Consensus 90 ~~G~pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~ 166 (510)
T PRK00750 90 YLGKPLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEE 166 (510)
T ss_pred hcCcccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCc
Confidence 33333 33444556898753 556665544333333222 34444444443322 110
Q ss_pred ------------------C-------Cccccccchhh----------hhcCCCC--CCCcC-ccccCCCCcccccccccC
Q 019674 199 ------------------G-------EDHIGKVSFPP----------VQAVPSF--PSSFP-HLFSGKDHLRCLIPCAID 240 (337)
Q Consensus 199 ------------------~-------~~~~g~~~Yp~----------lQaad~~--~~~f~-di~~l~~d~~c~vp~G~D 240 (337)
. ...-|.+.|-+ ..+.-=+ ...+| -+..++.| ..|.|.|
T Consensus 167 ~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd---~e~~GkD 243 (510)
T PRK00750 167 RQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGVD---FEPFGKD 243 (510)
T ss_pred cCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCCC---EEeeCcc
Confidence 0 00112344411 1100000 00000 01123443 4689999
Q ss_pred chh-HHHHHHHHhh-hhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 241 QDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 241 Qd~-~~~l~rdla~-k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
|.. ...+++.+++ .+|.+.|..++..++..-+| +|||||.+| .|.+.|
T Consensus 244 h~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 244 HASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred cCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 999 9999999999 89998898888777776655 899999976 888766
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.87 E-value=2.6e-08 Score=92.10 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=114.0
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
.||| .|||||+..+ +..| +.+..|..+++-|=|.-.- | . .........+++..+|++.+.- ++.||+..
T Consensus 9 sPtG-~lHlG~~r~a-l~n~l~Ar~~~G~~iLRieDtD~~--R-~----~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTA-LFNFAFARKYGGKFILRIEDTDPE--R-S----RPEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHH-HHHHHHHHHcCCeEEEEeCcCCCC--C-C----ChHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 4778 6999999999 4555 5566678888777664321 1 1 1233446677788899988764 55677654
Q ss_pred ccccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHH
Q 019674 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (337)
Q Consensus 172 ~~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdl 251 (337)
..|+..+-++-+. + |..+|-+--+.| |.+. + + +.|..|.|+...-..-+.+
T Consensus 79 -~~y~~~~~~L~~~--------------g---g~p~Y~la~vvD-------D~~~-g--I-ThViRG~D~l~st~~q~~l 129 (230)
T cd00418 79 -DLYRAYAEELIKK--------------G---GYPLYNFVHPVD-------DALM-G--I-THVLRGEDHLDNTPIQDWL 129 (230)
T ss_pred -HHHHHHHHHHHHc--------------C---CCcccccccccc-------cccc-C--C-CEEEECHhhhhchHHHHHH
Confidence 2233322222111 1 556666666666 6543 3 2 4588999998888888999
Q ss_pred hhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEecc----CCHHHHHHHHhh
Q 019674 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK 302 (337)
Q Consensus 252 a~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~----D~p~~i~~KI~k 302 (337)
++.+|.++|...|.+++...+| +|||||.++.+|--. -.|+.|..-+..
T Consensus 130 ~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 130 YEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred HHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcCHHHHHHCCCcHHHHHHHHHH
Confidence 9999999999999999999887 899999876444221 357777776644
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.82 E-value=8.2e-08 Score=94.08 Aligned_cols=208 Identities=19% Similarity=0.293 Sum_probs=112.9
Q ss_pred HHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEE-EEecCccccccc---------------
Q 019674 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLV-IQLTDDEKCMWK--------------- 134 (337)
Q Consensus 74 ~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~-I~IaD~~a~~~r--------------- 134 (337)
++|++....+.++.+=||+-||| .+||||+...+ ++.+.++..|.++. |..+|.|.-+.+
T Consensus 9 ~~~~~~~~~~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~ 87 (353)
T cd00674 9 EKIIEERKGKEKYVVASGISPSG-HIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGM 87 (353)
T ss_pred HHHHHhccCCCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCc
Confidence 34444433345688889999998 69999976542 33343444455554 457888832211
Q ss_pred C---------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccccccHH-HHHH-HHhhcCHHHHHHhh-CC--CCC
Q 019674 135 N---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYK-NMVK-VAKCVTYNKVVGIF-GF--TGE 200 (337)
Q Consensus 135 ~---------~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~-~~~~-i~r~~t~~~~~~~~-g~--~~~ 200 (337)
+ ...+-+.++.....+.+-.+|++.+ ++++++...+.-|. .+.. |.+.=.+.++...+ |. .++
T Consensus 88 pi~~ip~p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~ 164 (353)
T cd00674 88 PLSSVPDPFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQET 164 (353)
T ss_pred cchhchhhcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCC
Confidence 1 1122234444455556667899764 55665554332332 2222 44444444444321 11 000
Q ss_pred --------ccc--------------cccchhhh----hcCCCCC--------CCcC-ccccCCCCcccccccccCchhH-
Q 019674 201 --------DHI--------------GKVSFPPV----QAVPSFP--------SSFP-HLFSGKDHLRCLIPCAIDQDPY- 244 (337)
Q Consensus 201 --------~~~--------------g~~~Yp~l----Qaad~~~--------~~f~-di~~l~~d~~c~vp~G~DQd~~- 244 (337)
.+. +.+.|-+= -.+|... ..+| .+..++.| .-+.|.||..+
T Consensus 165 ~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd---~E~~GkDh~~~g 241 (353)
T cd00674 165 WYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVD---FEPFGKDHASAG 241 (353)
T ss_pred ceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCC---EEeeCccccccc
Confidence 011 23333220 0000000 0000 11123433 35899999888
Q ss_pred --HHHHHHHhh-hhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 245 --FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 245 --~~l~rdla~-k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+..++.+++ .++.+.|..+...++. +.| ++|||||.+| .|.+.|
T Consensus 242 gs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSkGn-vI~~~d 288 (353)
T cd00674 242 GSYDTGKEIAREIFGGEPPVPVMYEFIG-LKG-GGKMSSSKGN-VITPSD 288 (353)
T ss_pred cHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCC-CCccCCCCCC-cCCHHH
Confidence 999999999 8998888776666653 544 2699999976 888876
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.33 E-value=8.6e-06 Score=83.67 Aligned_cols=197 Identities=16% Similarity=0.240 Sum_probs=102.9
Q ss_pred CceeEEEecCCCCCCcchhhHHHHH----HHHhHHhhCCceE-EEEecCccccc---------------ccCC-----CH
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPL-VIQLTDDEKCM---------------WKNL-----SV 138 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~----~~~~lQ~~~~~~v-~I~IaD~~a~~---------------~r~~-----~~ 138 (337)
+++.+=||+.||| .+||||+.-.+ +.+.+... |.++ .|..+|.+-=+ ..++ +.
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~-g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDS-GSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHc-CCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 5789999999999 79999986542 44446555 4444 45578888211 1110 00
Q ss_pred HHHHHHHH----HHHHHHHHcCCCCCceEEEeCccccccccHHHHHH--HHhhcCHHHHHHhh-CC--CC--------Cc
Q 019674 139 EESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GF--TG--------ED 201 (337)
Q Consensus 139 e~i~~~~~----~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~--i~r~~t~~~~~~~~-g~--~~--------~~ 201 (337)
..-..++. ...+.+-.+|++ ..++++++....-.|.+.++ +.+.-.+.++...+ |. .+ ..
T Consensus 96 g~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~ 172 (515)
T TIGR00467 96 GCKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCE 172 (515)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecC
Confidence 01123333 333444458885 46667776654444444433 44444444444332 21 11 12
Q ss_pred cccccchhhhhcCCCCC-CCcC---------ccc-----------------cCCCCcccccccccCchhHH---HHHHHH
Q 019674 202 HIGKVSFPPVQAVPSFP-SSFP---------HLF-----------------SGKDHLRCLIPCAIDQDPYF---RMTRDV 251 (337)
Q Consensus 202 ~~g~~~Yp~lQaad~~~-~~f~---------di~-----------------~l~~d~~c~vp~G~DQd~~~---~l~rdl 251 (337)
+.|.+..|+. .+|.=. -.|- ++. .++.| .-|.|.|+..-. ..+.++
T Consensus 173 ~cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV~---~Ep~GkDH~~~ggsy~~~~~i 248 (515)
T TIGR00467 173 NCGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKVT---FEPAGKDHAAAGGSYDTGVNI 248 (515)
T ss_pred CcCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCcc---cccCCCCccCccCCchhHHHH
Confidence 3455555544 333100 0000 111 12222 247788865533 445566
Q ss_pred hh-hhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 252 AP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 252 a~-k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
|+ -+|...|..+..-++- |.|.|+|||||.+| .|.+.|
T Consensus 249 a~~~l~~~~P~~~~ye~v~-L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 249 AKEIFQYSPPVTVQYEWIS-LKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred HHHHhCCCCCcCcEEEEEE-EcCCCccccCCCCC-CccHHH
Confidence 65 4666667544333322 65666899999987 777754
No 33
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.83 E-value=0.00013 Score=68.05 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=95.8
Q ss_pred EecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcc
Q 019674 90 TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 169 (337)
Q Consensus 90 tG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~ 169 (337)
.|-.||| .|||||+..+++.--+.+..++.+++=|-|.-.-.. -..+ .......+++..+|++++. ++.||+
T Consensus 6 faPsPtG-~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~--~~~~---~~~~~i~~dL~wLGl~~d~--~~~qS~ 77 (240)
T cd09287 6 FAPNPNG-PLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK--RPDP---EAYDMIPEDLEWLGVKWDE--VVIASD 77 (240)
T ss_pred CCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc--cchH---HHHHHHHHHHHHcCCCCCC--ccchhc
Confidence 4556788 699999999944433666678888888888642110 0222 2223467788889998874 577776
Q ss_pred ccccccHHHHHHH-HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHH
Q 019674 170 YVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 248 (337)
Q Consensus 170 ~~~~~~~~~~~~i-~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~ 248 (337)
..+ .|+.-+-++ .+-..+. .... .+.- ..||..|-|-+. -|.+. + + +.|..|.|....-..-
T Consensus 78 r~~-~y~~~~~~Li~~G~aY~--~~~~---~~~~---~i~ptY~la~vV----DD~~~-g--I-ThViRg~d~~~~t~~q 140 (240)
T cd09287 78 RIE-LYYEYARKLIEMGGAYV--HPRT---GSKY---RVWPTLNFAVAV----DDHLL-G--V-THVLRGKDHIDNTEKQ 140 (240)
T ss_pred cHH-HHHHHHHHHHHcCCccc--Cccc---CCcE---EEEEccccceee----ecccc-C--C-CeEEechhhhhCCHHH
Confidence 542 222222121 1111111 0111 1111 224444443211 15432 2 2 3577899866655556
Q ss_pred HHHhhhhCCCCceeeecceecCCCCCCCccCCCCC
Q 019674 249 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (337)
Q Consensus 249 rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~ 283 (337)
+-+.+.+|.+.|...|.+++. .. ++||||...
T Consensus 141 ~~l~~~Lg~~~P~~~H~pll~-~~--~~kLSKR~~ 172 (240)
T cd09287 141 RYIYEYFGWEYPETIHWGRLK-IE--GGKLSTSKI 172 (240)
T ss_pred HHHHHHcCCCCCcEEeeeeec-CC--CCeeccccc
Confidence 677888999899988888774 23 489999973
No 34
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.61 E-value=0.00042 Score=64.47 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=87.8
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~ 172 (337)
.||| .|||||+..+++.-.+.+..|...++-|=|.-. .. ...+....+.+++..+|++.+. ++.||+..
T Consensus 9 sPtG-~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~----~R---~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~- 77 (238)
T cd00807 9 EPNG-YLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNP----EK---EEEEYVDSIKEDVKWLGIKPYK--VTYASDYF- 77 (238)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC----cc---cchHHHHHHHHHHHHcCCCCCC--ceecccCH-
Confidence 4678 699999999954433566667788776655321 11 1223334566777889999883 56777654
Q ss_pred cccHHHHH-HH---HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHH
Q 019674 173 GAFYKNMV-KV---AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 248 (337)
Q Consensus 173 ~~~~~~~~-~i---~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~ 248 (337)
+.|..++ ++ ++... . . .....-..-.+|-+--+.| |.+. + + +.|..|.|....-..-
T Consensus 78 -~~Y~~~~~~L~~~g~aY~--~--~---~~~~~~~i~ptY~lA~vVD-------D~~~-g--I-ThVvRG~D~l~~t~~Q 138 (238)
T cd00807 78 -DQLYEYAEQLIKKGKAYV--H--H---RTGDKWCIYPTYDFAHPIV-------DSIE-G--I-THSLCTLEFEDRRPSY 138 (238)
T ss_pred -HHHHHHHHHHHHcCCeec--C--C---CCCCCEEEEeccccceEee-------cccc-C--C-CeEEechhhhcCCHHH
Confidence 2333322 22 22222 0 0 0011001123333333444 5442 2 2 3567888866554445
Q ss_pred HHHhhhhCCCCceeeecceecCCCCCCCccCCCCC
Q 019674 249 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (337)
Q Consensus 249 rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~ 283 (337)
.-+.+.+|.+.|..++-.-+ +.+| .|+||+..
T Consensus 139 ~~l~~aLg~~~P~~~~~~hl-n~~g--~kLSKR~~ 170 (238)
T cd00807 139 YWLCDALRLYRPHQWEFSRL-NLTY--TVMSKRKL 170 (238)
T ss_pred HHHHHHcCCCCCceeEEEEE-CCCC--CCccCcCc
Confidence 66778899988864432223 5555 89999975
No 35
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00087 Score=68.06 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=60.5
Q ss_pred CceeEEEecCCCCCCcchhhHHHH----HHHHhHHhhCCceEEEEecCccccccc---CCC-HHHHH-------------
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLTDDEKCMWK---NLS-VEESQ------------- 142 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~----~~~~~lQ~~~~~~v~I~IaD~~a~~~r---~~~-~e~i~------------- 142 (337)
....+=||+.||| .+||||+-=+ +..+-|.+.+.-.-.|.++|+..=+.+ +++ .+...
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 5688999999999 7999997432 233336666443335568888854422 133 23333
Q ss_pred -----HHHHHHHHHHH----HcCCCCCceEEEeCccccccccHHHHHH--HHhhcCHHHHH
Q 019674 143 -----RLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVV 192 (337)
Q Consensus 143 -----~~~~~~~~~il----A~G~dp~k~~I~~~s~~~~~~~~~~~~~--i~r~~t~~~~~ 192 (337)
.+++.+.+.+. -+|+++ .++++++......|...++ +.+.--+.+++
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il 155 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELYKSGLYDEAIRIALERRDEIMEIL 155 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhhhcccHHHHHHHHHhhHHHHHHHH
Confidence 23444444444 468864 6667776655555655554 34444444443
No 36
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.57 E-value=0.00043 Score=67.97 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=81.1
Q ss_pred CCceeEEEecCCCCCCcchhhHHHH----HHHHhHHhhCCceEEEEecCcc----------------cccccCCC-----
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLTDDE----------------KCMWKNLS----- 137 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~----~~~~~lQ~~~~~~v~I~IaD~~----------------a~~~r~~~----- 137 (337)
+.+..+=+|+.||| .+||||+--+ +..+-|++.+.---.|..+|+- +++..+++
T Consensus 22 ~~~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 22 KEPYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp -SEEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred CccEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 46789999999999 7999998543 2334477764332344455544 22222211
Q ss_pred HHHHHHHHHHHH----HHHHHcCCCCCceEEEeCccccccccHHHHHH--HHhhcCHHHHHHhh----------------
Q 019674 138 VEESQRLARENA----KDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF---------------- 195 (337)
Q Consensus 138 ~e~i~~~~~~~~----~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~--i~r~~t~~~~~~~~---------------- 195 (337)
...-..+++.+. ..+-.+|+++ .++++++....-.|.+.++ +.+.-.+.++...+
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC 177 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPIC 177 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeec
Confidence 111112333333 3333579854 6667776654444444333 44444444443321
Q ss_pred ---CCCC-----C--ccccccchhhhhc-----CCCCCC--Cc---C----ccccCCCCcccccccccCchh---HHHHH
Q 019674 196 ---GFTG-----E--DHIGKVSFPPVQA-----VPSFPS--SF---P----HLFSGKDHLRCLIPCAIDQDP---YFRMT 248 (337)
Q Consensus 196 ---g~~~-----~--~~~g~~~Yp~lQa-----ad~~~~--~f---~----di~~l~~d~~c~vp~G~DQd~---~~~l~ 248 (337)
|+=. + ..-+.+.|-+--+ +|..-. -. + -+..++.+ .-|.|.|+-. -...+
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~lgVd---fEp~GKDH~~~GGS~d~~ 254 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAALGVD---FEPFGKDHASPGGSYDTS 254 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHHTT-S---EEEEEHHHHCTTSHHHHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhhcCce---eccCCCccCCCCCChhhH
Confidence 1100 0 1134455544111 100000 00 0 00113332 3578888776 77889
Q ss_pred HHHhhh-hCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC-----CHHHHH
Q 019674 249 RDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 297 (337)
Q Consensus 249 rdla~k-~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~ 297 (337)
.+||++ +|.+.|..+.--++ ++.| ++|||||.+| .|-+.| +|+.++
T Consensus 255 ~~I~~~i~g~~pP~~~~YE~~-~~~g-~~kmSsSkG~-~~t~~e~L~~~~PE~lr 306 (360)
T PF01921_consen 255 KRIAREILGYEPPVPFPYEFF-LDKG-GGKMSSSKGN-GITPEEWLEYAPPESLR 306 (360)
T ss_dssp HHHHHHCC-----EEEEE--E-EES----------------HHHHHTTS-HHHHH
T ss_pred HHHHHHHhCCCCCCCCCeeEE-EeCC-CcccccCCCC-ccCHHHHHHhcCHHHHH
Confidence 999955 78888876653333 3444 2599999987 777665 566554
No 37
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.54 E-value=0.00081 Score=69.03 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=49.8
Q ss_pred cccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
|..|.||..+.-.-+-+.+.+|...|...|.++|.+++| +||||..+.. .+.+ .|+.|.+=+..
T Consensus 200 VIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~--~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 200 IIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGAL--GIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred EEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCch--hHHHHHHCCCCHHHHHHHHHH
Confidence 458888888877778888999998999999999988887 8999997643 3332 57777766654
No 38
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.50 E-value=0.00087 Score=61.46 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCceeEEEecCCCCCCcchhhHHHH---HHHHhHHhhCCceEEEEe-cCccc--ccc---cC-CCHHH-HHHHHHHHHHH
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQL-TDDEK--CMW---KN-LSVEE-SQRLARENAKD 151 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~---~~~~~lQ~~~~~~v~I~I-aD~~a--~~~---r~-~~~e~-i~~~~~~~~~~ 151 (337)
++.-...||-=|-+ .+||||+-+. ..+.++++..|..|.... .|.|. ... +. .++.+ ++.+.....++
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444556777777 6999997654 344444455576666553 23332 221 12 56555 44555677778
Q ss_pred HHHcCCCC
Q 019674 152 IIACGFDV 159 (337)
Q Consensus 152 ilA~G~dp 159 (337)
+.++|+.+
T Consensus 98 ~~~l~i~~ 105 (213)
T cd00672 98 MKALNVLP 105 (213)
T ss_pred HHHcCCCC
Confidence 88899876
No 39
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.49 E-value=0.0016 Score=67.60 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=103.1
Q ss_pred CceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
..+....+=.||| .|||||+..+++.-.+.+.+|...++-|-|.-.-+.| ........+..++..+|++++.
T Consensus 100 g~V~tRFaPsPtG-~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R-----~~~e~~~~I~edL~wLGl~wD~-- 171 (567)
T PRK04156 100 GKVVMRFAPNPSG-PLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKR-----PDPEAYDMILEDLKWLGVKWDE-- 171 (567)
T ss_pred CeEEEEeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCccc-----chHHHHHHHHHHHHHcCCCCCC--
Confidence 3466777777888 6999999999444336667788888888775432212 1223334566777889998875
Q ss_pred EEeCccccccccHHH---HHHH------------------------HhhcCHHHHHHhh-----CC----------CC--
Q 019674 164 IFSDFDYVGGAFYKN---MVKV------------------------AKCVTYNKVVGIF-----GF----------TG-- 199 (337)
Q Consensus 164 I~~~s~~~~~~~~~~---~~~i------------------------~r~~t~~~~~~~~-----g~----------~~-- 199 (337)
++.||+..+ .|+.- +++- +|..+..+....+ |. +.
T Consensus 172 ~~~qSdr~~-~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~ 250 (567)
T PRK04156 172 VVIQSDRLE-IYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDL 250 (567)
T ss_pred ccCcccCHH-HHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcc
Confidence 567877652 22221 1111 1111221111100 00 00
Q ss_pred ---Ccc-----cc-------------ccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCC
Q 019674 200 ---EDH-----IG-------------KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 258 (337)
Q Consensus 200 ---~~~-----~g-------------~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~ 258 (337)
..+ +. -..||.++-|.+ .-|.+ .+- +.|..|.|...+-..-.-+.+.||.+
T Consensus 251 ~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~----VDD~l-~GI---THViRg~d~~~~t~~Q~~l~~~Lg~~ 322 (567)
T PRK04156 251 EHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVA----VDDHL-LGV---THVLRGKDHIDNTEKQRYIYDYFGWE 322 (567)
T ss_pred cCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCce----eeecC-CCC---CeEEcccccccChHHHHHHHHHcCCC
Confidence 000 00 112565554432 22322 222 45778888776666667778888998
Q ss_pred CceeeecceecCCCCCCCccCCCC
Q 019674 259 KPALIESSFFPALQGETGKMSASD 282 (337)
Q Consensus 259 ~p~~l~~~~lp~L~G~~~KMSkS~ 282 (337)
.|...|.++|. ++| .|||||.
T Consensus 323 ~P~~~H~~~L~-~~g--~kLSKR~ 343 (567)
T PRK04156 323 YPETIHYGRLK-IEG--FVLSTSK 343 (567)
T ss_pred CceEEEcceec-CCC--ceeeccc
Confidence 99999988875 565 7999997
No 40
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.48 E-value=0.0011 Score=63.81 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 94 PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 94 PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
||| .|||||+..++ ..| +.++.|..+++-|-|.-.- | . ..+....+.+++..+|++.+.. ++.||+-.
T Consensus 14 PTG-~LHlG~~rtAL-~n~l~Ar~~~G~~iLRiEDtD~~--R-~----~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 14 PSG-PLHFGSLVAAL-GSWLDARAHGGRWLLRIEDIDPP--R-E----VPGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCCC--c-c----chHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 567 69999999994 555 5566688888878774321 1 1 2234446778888999998864 34476644
No 41
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.43 E-value=0.00053 Score=70.59 Aligned_cols=199 Identities=18% Similarity=0.211 Sum_probs=97.2
Q ss_pred ceeE-EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCccccccc---C--CCHHHHHH-HHHHHHHHH
Q 019674 85 KFYL-YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDEKCMWK---N--LSVEESQR-LARENAKDI 152 (337)
Q Consensus 85 ~~~v-ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~a~~~r---~--~~~e~i~~-~~~~~~~~i 152 (337)
++.+ |+|--|+| .+||||+-..+ .+..+.++.|..|.-. ++|+-..+.. . ..++++.+ +.....+++
T Consensus 112 ~v~Ie~~spnp~g-~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (507)
T PRK01611 112 KVVVEYVSANPTG-PLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDL 190 (507)
T ss_pred EEEEEecCCCCCC-CCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56888888 59999988753 3333334456665443 6777533211 1 12344333 334556677
Q ss_pred HHcCCCCCceEEEeCccccccccHHHHHH-HHhh-cCHHHHHH-------hhCCCCC----ccccccchhhhhcCCCCCC
Q 019674 153 IACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKC-VTYNKVVG-------IFGFTGE----DHIGKVSFPPVQAVPSFPS 219 (337)
Q Consensus 153 lA~G~dp~k~~I~~~s~~~~~~~~~~~~~-i~r~-~t~~~~~~-------~~g~~~~----~~~g~~~Yp~lQaad~~~~ 219 (337)
..+|+..+. +.+..+.+ ....+..+++ +-.+ ..+.+-.. .+|-... -+=|..+|..-=.|-
T Consensus 191 ~~LgI~~D~-~~~es~~~-~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~t~Dia~---- 264 (507)
T PRK01611 191 DRLGVHFDV-WFSESELY-YNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFTRDIAY---- 264 (507)
T ss_pred HHcCCeeeE-EeecCcch-hcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccchHHHHHH----
Confidence 778886531 22222222 1222333332 2111 11100000 0110000 012334443221110
Q ss_pred CcCccccCC-CCcccccccccCchhHHHHHHHHhhhhCCCCce---eeecceecCCCCCCCccCCCCCCCeEeccCCHHH
Q 019674 220 SFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (337)
Q Consensus 220 ~f~di~~l~-~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~---~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~ 295 (337)
++.... .| .++--+|.||..|+.-...+++.+|..++. ..|..+-.-+.+.|+|||||.+| .|++.|=-++
T Consensus 265 ---~~~k~~~~d-~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 265 ---HLYKFERFD-RVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred ---HHHHHhhcC-EEEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc-eeEHHHHHHH
Confidence 111111 12 133368999999999999999999976432 23322211122245899999987 9998775444
No 42
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.39 E-value=0.0018 Score=66.18 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=50.7
Q ss_pred ccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
.|..|.||..+...-..+.+.+|.+.|...|.+++..++| +||||..+ ++.|.+ .|+.+.+-+..
T Consensus 200 hvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 200 HVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred EEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 3559999999888888899999998898889888888887 89999975 555543 46666655543
No 43
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.13 E-value=0.0042 Score=63.55 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=49.8
Q ss_pred ccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
.|..|.||..+.-.-..+.+.+|.+.|...|.+++.+++| +||||..+ ++.+.+ .|+.+.+=+.+
T Consensus 210 hvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 210 HVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred EEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence 3558999988888888889999998899888888888877 89999975 555543 45555554443
No 44
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.12 E-value=0.013 Score=55.76 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
.||| .|||||+..+++.-.+.+..|..+++-|=|.-.- | .. .+....+..++.-+|++.++. ++.||+..
T Consensus 8 SPtG-~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~--R-~~----~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSG-PLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPP--R-EV----PGAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCC--C-CC----hHHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 4778 6999999999444336666788888877664321 1 11 223335566777789998764 45677654
No 45
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.04 E-value=0.0063 Score=62.68 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=47.7
Q ss_pred EEEecCC--CCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 88 LYTGRGP--SSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 88 vytG~~P--Tg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
+.|=|.| || .|||||+-.+ ++.| +.+.+|..+++=|=|.-. . .+..++...+..++.-+|++++. +
T Consensus 12 v~tRFAPsPtG-~LHiGharaA-lln~l~Ar~~gG~~iLRiEDTDp----~---R~~~e~~~~I~~dL~WLGl~wD~--~ 80 (523)
T PLN03233 12 IVTRFPPEPSG-YLHIGHAKAA-LLNDYYARRYKGRLILRFDDTNP----S---KEKAEFEESIIEDLGKIEIKPDS--V 80 (523)
T ss_pred EEEeeCCCCCC-cccHHHHHHH-HHHHHHHHHhCCEEEEEECCCCC----C---ccchHHHHHHHHHHHHhCCCCCC--C
Confidence 5555655 57 7999999999 4555 666677777776655321 1 11233444666777788999875 5
Q ss_pred EeCcccc
Q 019674 165 FSDFDYV 171 (337)
Q Consensus 165 ~~~s~~~ 171 (337)
+.||++.
T Consensus 81 ~~qSdr~ 87 (523)
T PLN03233 81 SFTSDYF 87 (523)
T ss_pred ccccccH
Confidence 6777765
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.01 E-value=0.0039 Score=63.57 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=46.9
Q ss_pred ceeEE-EecCCCCCCcchhhHHHH---HHHHhHHhhCCceEEEEec-Ccc--cccc--c--CCCHHHH-HHHHHHHHHHH
Q 019674 85 KFYLY-TGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLT-DDE--KCMW--K--NLSVEES-QRLARENAKDI 152 (337)
Q Consensus 85 ~~~vy-tG~~PTg~slHlGh~l~~---~~~~~lQ~~~~~~v~I~Ia-D~~--a~~~--r--~~~~e~i-~~~~~~~~~~i 152 (337)
.+.+| ||--|.+ .+||||+.+. .++.++++..|..|..+.+ |++ +... + ..++.++ +.+.....+++
T Consensus 23 ~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35566 8988988 6999997664 3444444555777766644 333 3322 1 1566654 44556777888
Q ss_pred HHcCC-CCC
Q 019674 153 IACGF-DVT 160 (337)
Q Consensus 153 lA~G~-dp~ 160 (337)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 89998 443
No 47
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.95 E-value=0.011 Score=61.68 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=48.4
Q ss_pred EEEecCC--CCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 88 LYTGRGP--SSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 88 vytG~~P--Tg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
+.|=|.| || .|||||+..+ ++.| +.+.+|..+++=|=|.-. . .+..++...++.++..+|++.+.- +
T Consensus 53 v~tRFAPsPtG-yLHIGharaA-llN~l~Ar~~gG~~iLRiEDTDp----~---R~~~e~~d~IleDL~WLGl~wDe~-~ 122 (601)
T PTZ00402 53 VVTRFPPEASG-FLHIGHAKAA-LINSMLADKYKGKLVFRFDDTNP----S---KEKEHFEQAILDDLATLGVSWDVG-P 122 (601)
T ss_pred eEEeeCCCCCC-cccHHHHHHH-HHHHHHHHHhCCEEEEEEcCCCC----c---ccCHHHHHHHHHHHHHCCCCCCCc-e
Confidence 5555654 57 7999999999 4555 666778777776655321 1 122344456778888899998753 4
Q ss_pred EeCcccc
Q 019674 165 FSDFDYV 171 (337)
Q Consensus 165 ~~~s~~~ 171 (337)
+.||++.
T Consensus 123 ~~QSdr~ 129 (601)
T PTZ00402 123 TYSSDYM 129 (601)
T ss_pred eeccccH
Confidence 4577665
No 48
>PLN02627 glutamyl-tRNA synthetase
Probab=96.79 E-value=0.021 Score=58.98 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=43.2
Q ss_pred ccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
.|.-|.|....--.-.-|.+-+|.+.|...|.++|.+-+| +||||.++ ++.+.+ .|+.|.+=+..
T Consensus 252 HViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~--~~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 252 HVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHG--ATSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred EEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 3455665444333334566778999999999999888877 89999975 344432 56666665543
No 49
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.021 Score=58.32 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=48.2
Q ss_pred EEEecCCC--CCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 88 LYTGRGPS--SEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 88 vytG~~PT--g~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
|.|=|.|| | .|||||+..+ +.+| +.+++|...++=|=|.-. .| .+. +....+..++.-+|++++.. +
T Consensus 10 v~tRFAPsPtG-~LHiG~artA-l~N~~~Ar~~~G~fiLRiEDTD~--~R-~~~----e~~~~I~~~L~WLGl~wde~-~ 79 (472)
T COG0008 10 VRTRFAPSPTG-YLHIGHARTA-LLNYLYARKYGGKFILRIEDTDP--ER-ETP----EAEDAILEDLEWLGLDWDEG-P 79 (472)
T ss_pred eEEEECcCCCC-ccchHHHHHH-HHHHHHHHHhCCEEEEEecCCCC--CC-CCH----HHHHHHHHHHHhcCCCCCCc-e
Confidence 55666655 7 6999999999 5566 666778888777655322 11 122 22334556667799999887 6
Q ss_pred EeCcccc
Q 019674 165 FSDFDYV 171 (337)
Q Consensus 165 ~~~s~~~ 171 (337)
+.||+..
T Consensus 80 ~~QS~r~ 86 (472)
T COG0008 80 YYQSERF 86 (472)
T ss_pred eehhhhH
Confidence 6677654
No 50
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.66 E-value=0.016 Score=58.47 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
-||| .|||||+..++ ..| +.+..|..+++-|=|.-.- | ... +.......++.-+|++.+. .+.||+..
T Consensus 7 SPTG-~LHiG~artAL-~n~l~Ar~~gG~fiLRiEDTD~~--R-~~~----e~~~~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAI-FNYIVAKQQNEDFLIRIEDTDKE--R-NIE----GKDKEILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCCC--c-CCh----HHHHHHHHHHHHcCCCCCC--CeehhccH
Confidence 3778 69999999994 555 6677788888877664321 1 122 2233555666778999886 47787754
No 51
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=96.58 E-value=0.021 Score=57.94 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=44.7
Q ss_pred ccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhhcCcC
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINKYAFS 306 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 306 (337)
.|.-|.|....--.-.-|.+-+|.+.|...|.+++.+-+| +|+||..+. ..+.+ .|+.|.+=+..-..+
T Consensus 199 HViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~--~sv~~~r~~G~~Peai~n~la~lG~s 273 (445)
T PRK12558 199 HIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG--KGLSKRLGG--LSIRSLREDGIEPMAIASLLARLGTS 273 (445)
T ss_pred EEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc--ccccccCCC--cCHHHHHHCCCCHHHHHHHHHHHcCC
Confidence 3455665443322234456778888999999988888777 899999753 33322 577777766553444
No 52
>PLN02907 glutamate-tRNA ligase
Probab=96.57 E-value=0.047 Score=58.67 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=48.0
Q ss_pred EEEecCC--CCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 88 LYTGRGP--SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 88 vytG~~P--Tg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
+.|=|.| || .|||||+-.+++.-.+.+.+|..+++-|=|.-.- | .. .+....+..++.-+|+++++ ++
T Consensus 214 v~tRFaPsPtG-~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~--r-~~----~e~~~~I~~dl~wLG~~~d~--~~ 283 (722)
T PLN02907 214 VCTRFPPEPSG-YLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPS--K-ES----DEFVENILKDIETLGIKYDA--VT 283 (722)
T ss_pred eEEeeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCC--c-CC----hHHHHHHHHHHHHcCCCCCC--cc
Confidence 5666665 47 7999999999444337777788887766553211 1 11 23334566777778999886 45
Q ss_pred eCcccc
Q 019674 166 SDFDYV 171 (337)
Q Consensus 166 ~~s~~~ 171 (337)
.||++.
T Consensus 284 ~qS~r~ 289 (722)
T PLN02907 284 YTSDYF 289 (722)
T ss_pred cccccH
Confidence 677765
No 53
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=96.51 E-value=0.011 Score=53.77 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=34.3
Q ss_pred ccccCchhHHHHHHHHhhhhCCC-Cceeee--cceecCCCCCCCccCCCCC
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYH-KPALIE--SSFFPALQGETGKMSASDP 283 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~-~p~~l~--~~~lp~L~G~~~KMSkS~~ 283 (337)
.+|.||..|+.-.+.+++.+|.. +|...| ..++.+-+| +||||..+
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~G 212 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRAG 212 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCCC
Confidence 68999999999999999999975 333333 356654434 89999853
No 54
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.012 Score=59.60 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=44.8
Q ss_pred eeEE-EecCCCCCCcchhhHHH---HH-HHHhHHhhCC-ceEEEEecCcc-cccccC----CCHHHHHH-HHHHHHHHHH
Q 019674 86 FYLY-TGRGPSSEALHLGHLVP---FM-FTKYLQDAFK-VPLVIQLTDDE-KCMWKN----LSVEESQR-LARENAKDII 153 (337)
Q Consensus 86 ~~vy-tG~~PTg~slHlGh~l~---~~-~~~~lQ~~~~-~~v~I~IaD~~-a~~~r~----~~~e~i~~-~~~~~~~~il 153 (337)
+.+| ||.-+- +..||||.-+ +. +.++|+..++ +..|-=|+|.. |++.|. .++.++.+ +..++.+++.
T Consensus 23 V~mYvCGpTVY-d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYVCGPTVY-DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEecCCccC-CccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5565 344444 4799999654 43 5566777655 44443499988 666542 46766543 4456777777
Q ss_pred HcCC
Q 019674 154 ACGF 157 (337)
Q Consensus 154 A~G~ 157 (337)
|+|+
T Consensus 102 aL~v 105 (464)
T COG0215 102 ALNV 105 (464)
T ss_pred HhCC
Confidence 8877
No 55
>PLN02859 glutamine-tRNA ligase
Probab=96.28 E-value=0.082 Score=56.90 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=46.6
Q ss_pred EEEecC--CCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 88 LYTGRG--PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 88 vytG~~--PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
+.|=|. ||| .|||||+-.+++.-.+.+..|..+++-+=|.-. .. +..++...+..++.-+|+++++ ++
T Consensus 265 V~tRFaPsPtG-~LHiGharaallN~~~Ar~~~G~~~LRieDTdp----~r---~~~e~~~~I~edL~WLG~~~d~--~~ 334 (788)
T PLN02859 265 VYTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNP----EA---EKKEYIDHIEEIVEWMGWEPFK--IT 334 (788)
T ss_pred eEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC----Cc---cchHHHHHHHHHHHHcCCCCCC--cc
Confidence 556665 557 799999999844433666677777776555221 11 1223444556667778999875 45
Q ss_pred eCcccc
Q 019674 166 SDFDYV 171 (337)
Q Consensus 166 ~~s~~~ 171 (337)
.||++.
T Consensus 335 ~qSd~f 340 (788)
T PLN02859 335 YTSDYF 340 (788)
T ss_pred cccHhH
Confidence 677765
No 56
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=94.00 E-value=0.15 Score=53.18 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=49.1
Q ss_pred EEEecCCC--CCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 88 LYTGRGPS--SEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 88 vytG~~PT--g~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
+.|=|.|| | .|||||+..+++.-.+.+.+|..+++=+-|.-. . .+..++...+..++..+|++++. ++
T Consensus 94 vvtRFaPsPtG-~LHiGharaalln~~~Ar~~~G~~iLRidDTDp----~---R~~~e~~~~I~edL~wLGi~~d~--~~ 163 (560)
T TIGR00463 94 VVMRFAPNPSG-PLHIGHARAAILNQYFAKKYKGKLIIRFDDTDP----R---RVKPEAYDMILEDLDWLGVKGDE--VV 163 (560)
T ss_pred eEEEeCCCCCC-CccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCc----c---cccHHHHHHHHHHHHHcCCCCCc--cc
Confidence 55666554 6 799999999954444667778888777766422 1 11223444667788889999874 56
Q ss_pred eCcccc
Q 019674 166 SDFDYV 171 (337)
Q Consensus 166 ~~s~~~ 171 (337)
.||+..
T Consensus 164 ~qSd~~ 169 (560)
T TIGR00463 164 YQSDRI 169 (560)
T ss_pred cccccH
Confidence 777765
No 57
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=93.81 E-value=0.053 Score=52.18 Aligned_cols=55 Identities=18% Similarity=0.016 Sum_probs=34.7
Q ss_pred ccccccCch-hHHHHHHHHhhhhCCC-Ccee-eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQD-PYFRMTRDVAPRIGYH-KPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd-~~~~l~rdla~k~~~~-~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+..+|.||. +|+..-.-...-++.. .|.. +.+.++..-. |+|||||.+| .|++.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~KmSKS~gn-~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEG--GQKMSKSKGN-VIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCC--CccccccCCC-cCCHHH
Confidence 346899998 6766544444444433 3433 3356665433 3899999987 898754
No 58
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=93.27 E-value=0.76 Score=47.90 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=52.6
Q ss_pred HHHHHhhCCceeEEEecCC--CCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHH
Q 019674 76 ILDAYEKGEKFYLYTGRGP--SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII 153 (337)
Q Consensus 76 ll~~~~~~~~~~vytG~~P--Tg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~il 153 (337)
+++.+++|+--.+.|=|.| || .|||||+-.+++.-.+.+..|..+++-|=|.-. .. ...+.......++.
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~----~r---~~~e~~~~I~~dL~ 89 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNP----EK---EDQEYVDSIKEDVR 89 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCC----Cc---CChHHHHHHHHHHH
Confidence 3344556543336666665 47 799999999954444666678877776655221 11 12233445667777
Q ss_pred HcCCCCCceEEEeCcccc
Q 019674 154 ACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 154 A~G~dp~k~~I~~~s~~~ 171 (337)
-+|++++.- ++.||+..
T Consensus 90 wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 90 WLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HcCCCCCCC-ceeeecCH
Confidence 789998433 45566655
No 59
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=93.14 E-value=0.3 Score=47.35 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=46.1
Q ss_pred cccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEec------cCCHHHHHHHHhh
Q 019674 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV------TDSAKAIKNKINK 302 (337)
Q Consensus 233 c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L------~D~p~~i~~KI~k 302 (337)
+.|.-|.|....--.-+-|.+.||.+.|.-.|.+++...+| +|+||+....+|.+ .+.|+.+.+=+.+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 34566777555544556677889998899899998888887 89999986544322 3566666655544
No 60
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=92.98 E-value=0.25 Score=51.56 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=48.0
Q ss_pred EEEecC--CCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 88 LYTGRG--PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 88 vytG~~--PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
+.|=|. ||| .|||||+..+++.-.+.+..|..+++-|=|.-.- . ...++...+..++.-+|++++.. +
T Consensus 52 v~tRFaPsPtG-~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~----r---~~~e~~~~I~~dL~wLGi~~D~~--~ 121 (574)
T PTZ00437 52 PYFRFPPEPNG-FLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPE----T---EEQVYIDAIMEMVKWMGWKPDWV--T 121 (574)
T ss_pred EEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCcc----c---cChHHHHHHHHHHHHcCCCCCCC--C
Confidence 555565 557 7999999999544446677788877766553211 1 12344446667777899998764 3
Q ss_pred eCcccc
Q 019674 166 SDFDYV 171 (337)
Q Consensus 166 ~~s~~~ 171 (337)
.||++.
T Consensus 122 ~qS~y~ 127 (574)
T PTZ00437 122 FSSDYF 127 (574)
T ss_pred cCchhH
Confidence 567665
No 61
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=92.81 E-value=0.45 Score=49.26 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
.||| .|||||+-.+++.-.+.+..|..+++-|=|.-. ... ..+....+..++.-+|++++.. ++.||++.
T Consensus 8 sPtG-~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~----~r~---~~e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPNG-YLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNP----VKE---DPEYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCc----ccC---ChHHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 4778 699999999954444677778887776655322 111 1233445667777789998533 34577665
No 62
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=91.93 E-value=1.2 Score=48.40 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=52.0
Q ss_pred HHHhhCCceeEEEecCCC--CCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHc
Q 019674 78 DAYEKGEKFYLYTGRGPS--SEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIAC 155 (337)
Q Consensus 78 ~~~~~~~~~~vytG~~PT--g~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~ 155 (337)
+.++.|+.-.+.|=|.|| | .|||||+-.+++.-.+.+.+|..+++-|=|.-.- . +..++...+..++.-+
T Consensus 22 ~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~----r---~~~e~~~~I~~dl~wL 93 (771)
T PRK14703 22 EDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPE----T---EDTEYVEAIKDDVRWL 93 (771)
T ss_pred HHHhcCCCCceEEEeCcCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCC----c---CChHHHHHHHHHHHHc
Confidence 445554433466666654 7 7999999999444436666787777766553211 1 1123344566777778
Q ss_pred CCCCCceEEEeCcccc
Q 019674 156 GFDVTKTFIFSDFDYV 171 (337)
Q Consensus 156 G~dp~k~~I~~~s~~~ 171 (337)
|++++.. ++.||++.
T Consensus 94 G~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 94 GFDWGEH-LYYASDYF 108 (771)
T ss_pred CCCCCCC-ceEeecCH
Confidence 9987654 45577665
No 63
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=91.88 E-value=0.34 Score=50.73 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=42.1
Q ss_pred ccccCchhHHHHHHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccCCHHHHH
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~ 297 (337)
-+|.||..|+.....++..+|++.|. ..++.+-. ..+ .|||||.+| .|.+.|=.++..
T Consensus 333 V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~--~kmSkr~Gn-~V~~~dll~~~~ 391 (566)
T TIGR00456 333 VWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPL--GSMKTRRGN-VISLDNLLDEAS 391 (566)
T ss_pred EecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EEC--CCCCccCCc-eeeHHHHHHHHH
Confidence 48999999999999999999986664 33333211 122 599999976 999986555433
No 64
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.61 E-value=0.18 Score=49.34 Aligned_cols=54 Identities=26% Similarity=0.229 Sum_probs=31.9
Q ss_pred ccccccCchh-HHH--HHHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDP-YFR--MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~-~~~--l~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.|+-. |+- +-.-++ -.+...+. .+.+.++....| +|||||.+| +|++.|
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~~ 312 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQE 312 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHHH
Confidence 3467999875 322 222222 12332323 344777766666 899999987 998754
No 65
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=91.21 E-value=0.68 Score=37.12 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=36.8
Q ss_pred EEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 019674 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~d 158 (337)
++|-.| +.+|+||+..+.....++ + .+++.++|.+....+ .+...++++.+...+.++-+|.+
T Consensus 3 ~~~G~F--dp~H~GH~~l~~~a~~~~---d-~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 3 RFPGEP--GYLHIGHAKLICRAKGIA---D-QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EeCCCC--CCCCHHHHHHHHHHHHhC---C-cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 444444 469999998764443343 2 577788998876533 24555555554444444445543
No 66
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=90.50 E-value=0.21 Score=49.65 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=33.3
Q ss_pred ccccccCchhHHHH-HHHHhhhhCCCCc--eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRM-TRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l-~rdla~k~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.||...+-. ..-.+..+....| ..+.+.++..+.| +|||||.+| .|++.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence 34688998764332 2222222323334 3445777766776 899999987 887754
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=90.31 E-value=0.87 Score=48.71 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=46.0
Q ss_pred CceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc-c--ccc---c-CCCHHH-HHHHHHHHHHH
Q 019674 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-K--CMW---K-NLSVEE-SQRLARENAKD 151 (337)
Q Consensus 84 ~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~-a--~~~---r-~~~~e~-i~~~~~~~~~~ 151 (337)
++++|-|++ -|+| .+||||+.+.+ .+.++++.-|..|..+-++++ . ... + ..++.+ +.++..+..++
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 457788888 5888 69999987653 334445555777776655554 2 221 1 145544 44455566666
Q ss_pred HHHcCCCCC
Q 019674 152 IIACGFDVT 160 (337)
Q Consensus 152 ilA~G~dp~ 160 (337)
+.++|++.+
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 777776543
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.29 E-value=0.94 Score=47.60 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=68.1
Q ss_pred cccccccCchhHHHHHHHHhhhhCCCCce-eeecceecCCC-CCCCccCCCCCCCeEeccCCHHHHHHHHh---------
Q 019674 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKIN--------- 301 (337)
Q Consensus 233 c~vp~G~DQd~~~~l~rdla~k~~~~~p~-~l~~~~lp~L~-G~~~KMSkS~~nsaI~L~D~p~~i~~KI~--------- 301 (337)
++--+|.||.+|+.-.+-+++.+++..+. .+.+..+.... |.+.||||-.++ .|.|.|--+++.+|-.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era~~~~~~~~~~ 415 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERAPEEMEEKEEK 415 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHhhhHhhhhhhh
Confidence 44458999999999999999999987663 33333333333 356899999877 9999997776664331
Q ss_pred -------------hcC------cCCCCchHHHHhhcCCCccc-hHHHHHHHHhhc
Q 019674 302 -------------KYA------FSGGQESVELHRKLGANLEV-LEVLFLQIFTLF 336 (337)
Q Consensus 302 -------------k~A------~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~~~ 336 (337)
||+ -++--...++....-|||-. +-|.|-+..+++
T Consensus 416 ~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIl 470 (577)
T COG0018 416 NEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSIL 470 (577)
T ss_pred hHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHH
Confidence 001 11112445566666668877 777777776653
No 69
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.78 E-value=0.16 Score=49.06 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=31.2
Q ss_pred ccccCchhHH----HHHHHHhhhhCC---CCcee-eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYF----RMTRDVAPRIGY---HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~----~l~rdla~k~~~---~~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.||-+++ ..-...+...+. +.|.. +.+.++. +.| +|||||.+| +|++.|
T Consensus 229 v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 229 IGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE 288 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence 4799986544 233333444443 33432 3355554 555 899999987 998865
No 70
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.47 E-value=0.42 Score=52.56 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=36.8
Q ss_pred ccccccCch-hHHHHHHHHhhhhCCCCce--eeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHH
Q 019674 234 LIPCAIDQD-PYFRMTRDVAPRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299 (337)
Q Consensus 234 ~vp~G~DQd-~~~~l~rdla~k~~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~K 299 (337)
++.=|.||. +||.-.--+.--+....|. .+.+.|+..=+| +|||||.+| .| +|.+|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~G--rKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKG--RKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCC--CCccccCCC-cC----CHHHHHHh
Confidence 355689984 5887643333333334553 456777766665 999999988 44 45555554
No 71
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=89.38 E-value=0.26 Score=51.64 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred ccccCchhHHHHHHHHhhhhCCCCce-eee--cceecCCCCCCCccCCCCCCCeEeccCCHHH
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHKPA-LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~p~-~l~--~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~ 295 (337)
-+|.||..|+.-...+++.+|+..+. ..| ..++- +.| +||||-.++ .|.|+|=-++
T Consensus 330 V~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g--~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 330 VVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDG--KKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred EeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCC--CCCcCCCCC-eeEHHHHHHH
Confidence 58999999999999999999975332 222 33343 444 799999876 9999885444
No 72
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=89.34 E-value=0.81 Score=49.98 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=47.4
Q ss_pred CCceeEEEecCCC--CCCcchhhHHHHH---HHHhHHhhCCceEEEEecC-ccccc------ccCCCHH-HHHHHHHHHH
Q 019674 83 GEKFYLYTGRGPS--SEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTD-DEKCM------WKNLSVE-ESQRLARENA 149 (337)
Q Consensus 83 ~~~~~vytG~~PT--g~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD-~~a~~------~r~~~~e-~i~~~~~~~~ 149 (337)
++++++..|+ |+ | .||+||+.... ++.++|+.-|..|....|= .|+.- ....++. -..++..+..
T Consensus 31 ~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578888887 66 7 69999988652 4445666667776655443 33321 1123333 3455566667
Q ss_pred HHHHHcCCCCC
Q 019674 150 KDIIACGFDVT 160 (337)
Q Consensus 150 ~~ilA~G~dp~ 160 (337)
+++.++|+..+
T Consensus 109 ~~~~~lGi~~D 119 (805)
T PRK00390 109 KQLKSLGFSYD 119 (805)
T ss_pred HHHHHhCCccc
Confidence 77888898654
No 73
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.45 E-value=1.1 Score=46.88 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred CceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEe-cCcccc--cc----cCCCHHH-HHHHHHHHHHH
Q 019674 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC--MW----KNLSVEE-SQRLARENAKD 151 (337)
Q Consensus 84 ~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~I-aD~~a~--~~----r~~~~e~-i~~~~~~~~~~ 151 (337)
++++|-|.+- |.| .+||||+.+.+ ...++|+.-|..++.+- +|.|.. .. ...++++ +.++..+....
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4455555543 556 79999987653 44556776677776664 455542 21 1256665 44455555566
Q ss_pred HHHcCCC
Q 019674 152 IIACGFD 158 (337)
Q Consensus 152 ilA~G~d 158 (337)
+.+++++
T Consensus 84 ~~~l~Is 90 (558)
T COG0143 84 FKALNIS 90 (558)
T ss_pred HHHhCCc
Confidence 6665543
No 74
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.29 E-value=1.4 Score=45.57 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=45.3
Q ss_pred EEEec--CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 88 LYTGR--GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 88 vytG~--~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
|.+-| +||| .|||||.-.+++-.++|.++...+++-.-| + ++ -..++.+ ...+.++--+|+.|++...
T Consensus 201 Vv~RFPPEpSG-yLHIGHAKAALLNqYfa~~~~G~LIvRFDD-T----NPaKE~~eFe---~~IleDl~~LgIkpd~~Ty 271 (712)
T KOG1147|consen 201 VVTRFPPEPSG-YLHIGHAKAALLNQYFAQAYQGKLIVRFDD-T----NPAKENEEFE---DVILEDLSLLGIKPDRVTY 271 (712)
T ss_pred eEEecCCCCCc-eeehhhHHHHHHHHHHHHhcCceEEEEecC-C----CcchhhHHHH---HHHHHHHHHhCcCcceeee
Confidence 34444 6787 799999999978888999998888775433 2 12 2223333 2345666668998876554
No 75
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=87.52 E-value=0.48 Score=52.41 Aligned_cols=52 Identities=29% Similarity=0.230 Sum_probs=33.0
Q ss_pred ccccccCchh-HH--HHHHHHhhhhCCCCceee-ecceecCCCCCCCccCCCCCCCeEec
Q 019674 234 LIPCAIDQDP-YF--RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 234 ~vp~G~DQd~-~~--~l~rdla~k~~~~~p~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
+...|.||-. |+ .+-..++- .|.+++..+ .+.++...+| +|||||.+| .|..
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vIdP 603 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VIDP 603 (912)
T ss_pred EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCCH
Confidence 3568999964 42 33333333 454444433 4778877777 899999987 6654
No 76
>PLN02224 methionine-tRNA ligase
Probab=87.36 E-value=1.5 Score=46.55 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=53.7
Q ss_pred cCcccccCCHHHHHHHHhhCCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCccc--ccc---
Q 019674 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEK--CMW--- 133 (337)
Q Consensus 64 Rgi~~~~~d~~~ll~~~~~~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a--~~~--- 133 (337)
|.||+..++.+.=. .+++++++-|+. -|+| .+||||+.+.+ .+.++++.-|..|..+ =.|.|. ...
T Consensus 52 ~~~~~~~~~~~~~~---~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~ 127 (616)
T PLN02224 52 RALYCTSSSQESTV---DEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA 127 (616)
T ss_pred ceeeccCCCcccCC---CCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH
Confidence 56666555555321 245667777777 6777 69999988753 3333455556666554 445564 221
Q ss_pred c-CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 019674 134 K-NLSV-EESQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 134 r-~~~~-e~i~~~~~~~~~~ilA~G~dp~ 160 (337)
+ ..++ +-+++++....+.+.++|++++
T Consensus 128 ~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 1333 3355555555666667777654
No 77
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=87.22 E-value=0.35 Score=49.56 Aligned_cols=51 Identities=27% Similarity=0.253 Sum_probs=33.1
Q ss_pred cccccCchhHHHH---HHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRM---TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l---~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.++-+ +.-.+ .+.+.|. .+++.++. +.| +|||||.+| .|++.|
T Consensus 258 ~~~G~D~~~~h~~~~~a~~~a--~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 258 HLIGKDILRFHAVYWPAFLMA--AGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred eEecccccccchhHHHHHHHh--CCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 4679999885332 33222 2545554 34466665 565 899999987 998865
No 78
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=86.61 E-value=0.5 Score=49.82 Aligned_cols=53 Identities=26% Similarity=0.226 Sum_probs=29.7
Q ss_pred ccccccCchh-HHHHHHHHhhhhCCCCc--eeeecceecCCCCCCCccCCCCCCCeEec
Q 019674 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 234 ~vp~G~DQd~-~~~l~rdla~k~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
+..-|.||-. |+....-+...+....| ..+.+.++...+| +|||||.+| .|.+
T Consensus 517 ~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p 572 (601)
T PF00133_consen 517 LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP 572 (601)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence 3467889876 44333333333333334 3556778888887 999999988 6654
No 79
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=86.48 E-value=0.57 Score=52.16 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=32.2
Q ss_pred ccccccCchh-HHHHHHHHhhhhCCCCc--eeeecceecCCCCCCCccCCCCCCCeEecc
Q 019674 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (337)
Q Consensus 234 ~vp~G~DQd~-~~~l~rdla~k~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 290 (337)
+...|.||.. ||.-.-=.+--+....| ..+.|.++...+| +|||||.+| .|...
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP~ 642 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSPQ 642 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCHH
Confidence 3568999975 44332111111222234 3445788877777 899999987 77543
No 80
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=86.09 E-value=0.51 Score=51.86 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=32.8
Q ss_pred ccccccCchh-HHHHHHHHhhh-hCCCCceee-ecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDP-YFRMTRDVAPR-IGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~-~~~l~rdla~k-~~~~~p~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.||-. |+......+-- .+...|..+ .+.++...+| +|||||.+| .|+..|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHHH
Confidence 4568999965 33332222221 244333333 3666665565 899999987 887654
No 81
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=85.54 E-value=1.4 Score=45.81 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=39.9
Q ss_pred EEEecCCC--CCCcchhhHHHH----HHHHhHHhhCCceEEEEe-cCcccc-c-c---c-CCCHHHH-HHHHHHHHHHHH
Q 019674 88 LYTGRGPS--SEALHLGHLVPF----MFTKYLQDAFKVPLVIQL-TDDEKC-M-W---K-NLSVEES-QRLARENAKDII 153 (337)
Q Consensus 88 vytG~~PT--g~slHlGh~l~~----~~~~~lQ~~~~~~v~I~I-aD~~a~-~-~---r-~~~~e~i-~~~~~~~~~~il 153 (337)
+.|.--|+ | .+||||+.+. .++.++++.-|..|.... .|.|.. + . + ..+..++ ++++....+++.
T Consensus 6 ~i~~~~py~ng-~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 6 LITSAWPYANG-PLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEecCCCCCCC-CccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44444455 6 7999998765 233344444576766653 344422 1 1 1 1455443 445556666777
Q ss_pred HcCCCCC
Q 019674 154 ACGFDVT 160 (337)
Q Consensus 154 A~G~dp~ 160 (337)
++|++++
T Consensus 85 ~l~i~~d 91 (556)
T PRK12268 85 KLGISYD 91 (556)
T ss_pred HcCCcCC
Confidence 7777654
No 82
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=85.45 E-value=2.4 Score=43.43 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=45.4
Q ss_pred hCCceeEEEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Ccc--cccc----cCCCHHHHH-HHHHHHHH
Q 019674 82 KGEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDE--KCMW----KNLSVEESQ-RLARENAK 150 (337)
Q Consensus 82 ~~~~~~vytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~--a~~~----r~~~~e~i~-~~~~~~~~ 150 (337)
.++.-...||--|.+ .+||||..+++ .++++++..|..|..+.+ |++ +... ...++.++. .+.....+
T Consensus 19 ~~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 19 QGKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred CCcceEEEecCccCC-CcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344444567877777 69999976643 333434445666655422 444 3322 125666644 44556677
Q ss_pred HHHHcCCCCC
Q 019674 151 DIIACGFDVT 160 (337)
Q Consensus 151 ~ilA~G~dp~ 160 (337)
++.++|+.++
T Consensus 98 dl~~LgI~~d 107 (465)
T TIGR00435 98 DMKALNVLPP 107 (465)
T ss_pred HHHHhCCCCC
Confidence 7888888644
No 83
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=85.42 E-value=3.1 Score=45.76 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCc-cccc-c-----cCCCHH-HHHHHHHHHHHH
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD-EKCM-W-----KNLSVE-ESQRLARENAKD 151 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~-~a~~-~-----r~~~~e-~i~~~~~~~~~~ 151 (337)
++++++..|+=...+.||+||+.... ++.++++.-|..|....|=+ |+.- . +..++. -+.++..+..++
T Consensus 28 k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~ 107 (842)
T TIGR00396 28 KPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQ 107 (842)
T ss_pred CCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35578887743223369999988653 44456666677776665544 3331 1 123433 355566677778
Q ss_pred HHHcCCCCC
Q 019674 152 IIACGFDVT 160 (337)
Q Consensus 152 ilA~G~dp~ 160 (337)
+.++|+..+
T Consensus 108 ~~~lG~~~D 116 (842)
T TIGR00396 108 LQALGFSYD 116 (842)
T ss_pred HHHhCCccc
Confidence 888887543
No 84
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=85.34 E-value=2.3 Score=42.51 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=30.4
Q ss_pred ccccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+-.+|.|--.++-+ +--+| .+.+.|..+. +.++. +.| +|||||.+| +||..|
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~a--~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~~~ 340 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLLA--AGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWPDD 340 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--CTB---SEEEEE--EE-ETT--CCEETTTTE-SSBHHH
T ss_pred EEEEccchhHHHHHHhHHHHhc--ccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCHHH
Confidence 34578876666555 33334 4555665554 44444 566 899999977 999865
No 85
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=84.83 E-value=1.7 Score=44.89 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=32.5
Q ss_pred ccccccCchhHHHHH-HHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~-rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.|...++-+- --+..-++.+.|..+. +.++. +.| +|||||.+| .|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 456899988854331 1122223444454433 55553 335 899999987 998765
No 86
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=84.37 E-value=1.2 Score=43.06 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred ccccCchhHHHHHH-HHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYFRMTR-DVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~~l~r-dla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.|+-.++-+.- -+..-.+.+.|..++ +.++ .+.| +|||||.+| +|++.|
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~ 293 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD 293 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence 48999888653310 112224455454444 4443 4455 899999987 998854
No 87
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=83.97 E-value=2.7 Score=43.10 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc--cc---c-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 019674 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW---K-NLSVEE-SQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 94 PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~--~~---r-~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (337)
|+| .+||||+.+++ ++.++++..|..|..+ =.|.|.. .. + ..++++ ++++..+..+++.++|++++
T Consensus 12 ~~g-~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 12 PNG-KPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 346 79999987653 3333444446666554 3444421 11 1 145544 44455666778888898765
No 88
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=83.92 E-value=0.35 Score=48.36 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=20.4
Q ss_pred CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCccc
Q 019674 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEK 130 (337)
Q Consensus 94 PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a 130 (337)
|.| .|||||+.+.+ ...++++.-|..|.++ =+|.|.
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG 49 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHG 49 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SS
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhh
Confidence 667 59999987763 3333444447776554 467774
No 89
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=82.68 E-value=1.1 Score=48.88 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=30.7
Q ss_pred cccccCchhHHHHHHHHhhh--hCCCCc--eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k--~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.. -+.+-++.. +....| ..+.+.++...+| +|||||.+| .|++.|
T Consensus 490 ~~~G~Di~~~-w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 546 (800)
T PRK13208 490 RPQGHDIIRT-WLFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE 546 (800)
T ss_pred EEeecchhhh-HHHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence 4578888752 222222111 122234 3344777777776 899999987 777644
No 90
>PLN02286 arginine-tRNA ligase
Probab=82.00 E-value=2.1 Score=45.00 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=44.8
Q ss_pred cccccccCchhHHHHHHHHhhhhCCCCc------eeeecceecCCCCCCCccCCCCCCCeEeccCCHHHH
Q 019674 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296 (337)
Q Consensus 233 c~vp~G~DQd~~~~l~rdla~k~~~~~p------~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i 296 (337)
++--+|.||..|+.-...+++.+|+.++ .++...++-++.| +||||-.++ .|+|.|=-+++
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea 396 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEA 396 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHH
Confidence 3445899999999999999999997422 2333556755665 799888766 99998855543
No 91
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=81.97 E-value=3.4 Score=39.89 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=37.7
Q ss_pred CCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc--cc---c-CCCHHHHHH-HHHHHHHHHHHcCCCCCc
Q 019674 95 SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW---K-NLSVEESQR-LARENAKDIIACGFDVTK 161 (337)
Q Consensus 95 Tg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~--~~---r-~~~~e~i~~-~~~~~~~~ilA~G~dp~k 161 (337)
+| .+||||+.+.. ++.++++..|..|..+ =.|.|.. .. + ..+++++.+ +.....+++.++|++++.
T Consensus 12 ng-~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 12 NG-VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CC-CcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 46 69999988753 3333445556666544 2455521 11 1 156655443 445566777788887653
No 92
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=81.13 E-value=1.4 Score=48.60 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=33.6
Q ss_pred cccccCchhHHHHHHHHhhhh--CCCCc--eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k~--~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.+. .+|-++..+ ....| ..+.+.++...+| +|||||.+| .|+..|
T Consensus 477 ~~~G~Dii~~W-~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 477 LVTGFDIIFFW-VARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred ccccccccchH-HHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 46788887642 233333322 22345 3445888888887 899999987 787654
No 93
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=81.08 E-value=1 Score=46.92 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=31.5
Q ss_pred cccccCchhHHHH-HHHHhhhhC--CCCcee-eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRM-TRDVAPRIG--YHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l-~rdla~k~~--~~~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.|+-+++.+ ---+..-.+ .+.|.. +.+.++. ++| +|||||.+| .|+..|
T Consensus 291 ~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 291 YFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence 3468898776653 122222223 444533 3355554 565 899999987 888765
No 94
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=81.01 E-value=1.4 Score=48.37 Aligned_cols=54 Identities=24% Similarity=0.188 Sum_probs=34.1
Q ss_pred ccccccCchhHHHHHHHHhh--hhCCCCc--eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~--k~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.||-.++- +|-++. .+..+.| ..+.+.++...+| +|||||.+| .|++.|
T Consensus 481 ~~~~G~Dii~fw~-~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFWV-ARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred eeecchhhhhHHH-HHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 3568999876432 222222 2223445 3445788888777 899999987 887654
No 95
>PLN02843 isoleucyl-tRNA synthetase
Probab=80.96 E-value=1.4 Score=49.26 Aligned_cols=52 Identities=25% Similarity=0.157 Sum_probs=30.8
Q ss_pred ccccccCchh--HHHH-HHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEec
Q 019674 234 LIPCAIDQDP--YFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 234 ~vp~G~DQd~--~~~l-~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
+...|.||.. +..+ ..-++ -.+..++. .+.|.++..-+| +|||||.+| .|..
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p 622 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP 622 (974)
T ss_pred eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence 3568999987 3333 22222 13332223 344777777676 899999987 6643
No 96
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=80.06 E-value=1.5 Score=48.92 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=30.4
Q ss_pred ccccccCchh-HHHHHHHHhh-hhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDP-YFRMTRDVAP-RIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~-~~~l~rdla~-k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
++..|.||-. |+-....+.- -++.+++. .+.+.++...+| +|||||.+| .|+..|
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~d 605 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPFE 605 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHHH
Confidence 3457999865 2222111111 12332222 344667766666 899999987 776543
No 97
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=79.80 E-value=1.5 Score=49.35 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=33.1
Q ss_pred cccccCchhHHHHHHHHhhhh--CCCCc--eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k~--~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.+ =.+|-++..+ ....| ..+.+.++..-+| +|||||.+| .|+..|
T Consensus 495 ~~~G~Dii~~-W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 495 METGHDIIFF-WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hcccccHHhH-HHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 4578887643 2334444332 12345 3445777777666 899999987 887655
No 98
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=79.55 E-value=1.5 Score=43.86 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=40.8
Q ss_pred ceeEE-EecCCCCCCcchhhHHHH---HHHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHHHH
Q 019674 85 KFYLY-TGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAKDI 152 (337)
Q Consensus 85 ~~~vy-tG~~PTg~slHlGh~l~~---~~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i~-~~~~~~~~~i 152 (337)
.+.+| ||--|-+ .+||||+.++ ..++++++..|..|..+ ++|.- +.+.+ ..+++++. ++.....+++
T Consensus 9 ~v~~YvCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~ 87 (384)
T PRK12418 9 TATMYVCGITPYD-ATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDM 87 (384)
T ss_pred eeEEEecCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444 4544555 7999998765 34444444456555554 44433 44332 26666644 4455667777
Q ss_pred HHcCC
Q 019674 153 IACGF 157 (337)
Q Consensus 153 lA~G~ 157 (337)
.++|+
T Consensus 88 ~~Lni 92 (384)
T PRK12418 88 EALRV 92 (384)
T ss_pred HHhCC
Confidence 78886
No 99
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=78.88 E-value=1.6 Score=45.07 Aligned_cols=25 Identities=8% Similarity=0.063 Sum_probs=13.5
Q ss_pred ccccCcccCCCcccHHHHHHHhCCC
Q 019674 16 VVSPWEVSSSGKIDYDKLIDKFGCQ 40 (337)
Q Consensus 16 ~~~p~~~~~~~~~dy~kl~~~fg~~ 40 (337)
.++|++......-.+.+.++.+|+.
T Consensus 60 g~~~~e~~~~~~~~~~~~l~~LgI~ 84 (530)
T TIGR00398 60 GLTPKELVDKYHEEFKDDWKWLNIS 84 (530)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566655332233466666667764
No 100
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=78.83 E-value=1.5 Score=46.88 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=32.8
Q ss_pred ccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.|-..++.+ +.=++ .+++.|..+. +.++.. .| +|||||.+| .|+..|
T Consensus 289 ~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 289 FIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 478887776544 33333 4566665444 666654 65 899999987 888755
No 101
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=77.41 E-value=7.3 Score=37.66 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=40.6
Q ss_pred CceeEE-EecCCCCCCcchhhHHHHH----HHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHH
Q 019674 84 EKFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAK 150 (337)
Q Consensus 84 ~~~~vy-tG~~PTg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i~-~~~~~~~~ 150 (337)
+.+.+| ||--+-. ..||||+-+++ +.++|+. .|..|..+ |+|.. +.+.+ ..++.++. .+..+..+
T Consensus 7 ~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 445565 4555555 79999987653 4445655 57666443 89988 55542 16666644 44556667
Q ss_pred HHHHcCCCCC
Q 019674 151 DIIACGFDVT 160 (337)
Q Consensus 151 ~ilA~G~dp~ 160 (337)
++.++|+.+.
T Consensus 85 dm~~Lnv~~p 94 (300)
T PF01406_consen 85 DMKALNVLPP 94 (300)
T ss_dssp HHHHTT----
T ss_pred HHHHcCCCCC
Confidence 7777877653
No 102
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=77.22 E-value=1.3 Score=47.11 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=32.1
Q ss_pred cccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.++-+ +.-++ .+.+.|..+. +.++. +.| +|||||.+| .|+..|
T Consensus 258 ~~~GkDii~fH~i~wpa~l~~--~~~~~p~~v~~hg~l~-~eg--~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 258 HLVGKDILRFHAIYWPIMLMA--LGLPLPKKVFAHGWWL-MKD--GKMSKSKGN-VVDPEE 312 (648)
T ss_pred EEEeeeecchhHHHHHHHHHh--CCCCCCcEEEecceEE-ECC--ceecccCCc-ccCHHH
Confidence 3579999885543 22222 3555665443 55544 344 899999987 888755
No 103
>PLN02943 aminoacyl-tRNA ligase
Probab=77.20 E-value=1.8 Score=48.30 Aligned_cols=53 Identities=25% Similarity=0.157 Sum_probs=33.8
Q ss_pred cccccCchhHHHHHHHHhhh--hCCCCc-e-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRMTRDVAPR--IGYHKP-A-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k--~~~~~p-~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-. +=++|-++.. +..+.| . .+.+.++...+| +|||||.+| .|+..|
T Consensus 540 ~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 596 (958)
T PLN02943 540 LETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLD 596 (958)
T ss_pred EEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHH
Confidence 456999874 3344544432 222345 2 445777777777 899999987 887755
No 104
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=77.04 E-value=3.9 Score=39.43 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=35.4
Q ss_pred CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc-cc----c-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 019674 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC-MW----K-NLSVEE-SQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 94 PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~-~~----r-~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (337)
|+| .+||||+.+.+ ++.++++.-|..|..+ =.|.|.. +. + ..+..+ ++++..+..+++.++|+.++
T Consensus 11 ~ng-~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSG-ALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCC-CccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 455 79999987753 3333344445555433 3454431 11 1 144444 34444566677777888654
No 105
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=76.46 E-value=2.2 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.9
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhhCCC
Q 019674 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (337)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~ 57 (337)
..+|+++++. ||-+||+++.-+-+..++|++
T Consensus 16 ~kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 16 PKVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred cccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 4699999998 999999999888888887764
No 106
>PLN02959 aminoacyl-tRNA ligase
Probab=76.27 E-value=2.2 Score=48.15 Aligned_cols=53 Identities=15% Similarity=-0.020 Sum_probs=28.5
Q ss_pred cccccCchhHH-HHHHHHhhhhCCCCce---eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYF-RMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~-~l~rdla~k~~~~~p~---~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
..-|.||-..+ ...+-...-+....|. .+.+.+|. ++| +|||||.+| .|.+.|
T Consensus 675 ~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 675 RVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred EEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence 35688886643 3222211111122332 23345554 565 999999987 777644
No 107
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=75.79 E-value=1.2 Score=43.91 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=42.4
Q ss_pred CCCcccccccccCchhHHHHHHHHhhhhCCC-C-ceeee--cceecCCCCCCC-ccCCCCCCCeEeccCCHHHHHHHH
Q 019674 228 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-K-PALIE--SSFFPALQGETG-KMSASDPNSAIYVTDSAKAIKNKI 300 (337)
Q Consensus 228 ~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~-~-p~~l~--~~~lp~L~G~~~-KMSkS~~nsaI~L~D~p~~i~~KI 300 (337)
+.|. ++--+|.||..|+.-...+++++|+. + ....| ..++.+-+| + |||+..++ .|.|+|=-++..++.
T Consensus 237 ~~d~-~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~g--k~~mstR~G~-~i~l~dllde~~~~a 310 (354)
T PF00750_consen 237 GFDK-IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDG--KVKMSTRKGN-VITLDDLLDEAVERA 310 (354)
T ss_dssp S-SE-EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTB--EESS-TTTTS-STBHHHHHHHHHHHH
T ss_pred cccc-EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCC--CccccCCCCC-ceEHHHHHHHHHHHH
Confidence 3443 33458999999999999999999972 1 12223 233333343 4 79999876 999977555444443
No 108
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=75.61 E-value=8.3 Score=41.07 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=41.6
Q ss_pred ceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc--cc----cCCCHHH-HHHHHHHHHHHH
Q 019674 85 KFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW----KNLSVEE-SQRLARENAKDI 152 (337)
Q Consensus 85 ~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~--~~----r~~~~e~-i~~~~~~~~~~i 152 (337)
+++|-|.+- |+| .+||||+.+.+ ++.++++.-|..|..+ =+|.|.. .. ...++++ +..+.....+++
T Consensus 5 ~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l 83 (648)
T PRK12267 5 TFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW 83 (648)
T ss_pred CEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444444432 346 79999987653 3344455446655554 4565532 11 1145554 344445666777
Q ss_pred HHcCCCCC
Q 019674 153 IACGFDVT 160 (337)
Q Consensus 153 lA~G~dp~ 160 (337)
.++|++.+
T Consensus 84 ~~lgI~~D 91 (648)
T PRK12267 84 KKLDISYD 91 (648)
T ss_pred HHcCCCCC
Confidence 78888765
No 109
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=75.12 E-value=9.1 Score=38.33 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=17.9
Q ss_pred eeecceecCCCCCCCccCCCCCCCeEecc
Q 019674 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290 (337)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 290 (337)
...+.-+....| +|||||.+| .|.+.
T Consensus 248 ~w~H~g~l~~~G--~KMSKSlGN-~i~~~ 273 (384)
T PRK12418 248 HYVHAGMIGLDG--EKMSKSRGN-LVFVS 273 (384)
T ss_pred EEEECCEECCCC--CcccCcCCC-cCCHH
Confidence 334444456666 899999987 77764
No 110
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=73.84 E-value=2.2 Score=47.27 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=28.5
Q ss_pred cccccCchhHH-HHHHHHhhh--hCC-CCc-eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYF-RMTRDVAPR--IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~-~l~rdla~k--~~~-~~p-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.++ -..+-. .. ++. +-| ..+.+.++.. +| +|||||.+| .|++.|
T Consensus 534 ~~~GkDii~~Hl~~~~~~-~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~e 590 (897)
T PRK12300 534 RHSGKDLIPNHLTFFIFN-HVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLRK 590 (897)
T ss_pred EEeeeccCccHHHHHHHH-HHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHHH
Confidence 46899996531 111111 11 111 223 3444666654 55 899999987 776543
No 111
>PLN02946 cysteine-tRNA ligase
Probab=73.49 E-value=13 Score=39.17 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=42.7
Q ss_pred CceeEEEecCCC--CCCcchhhHHHH---HHHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHH
Q 019674 84 EKFYLYTGRGPS--SEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAK 150 (337)
Q Consensus 84 ~~~~vytG~~PT--g~slHlGh~l~~---~~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i-~~~~~~~~~ 150 (337)
+.+.+|+ -+|| + .+||||+.++ ..++++.+..|..|..+ ++|.- +++.+ ..++.++ +++..+..+
T Consensus 79 ~~v~~Y~-CGpTvYd-~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 79 GKVGMYV-CGVTAYD-LSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CceeEEE-eCCccCC-CCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455553 2566 6 7999997664 33444334456666544 55544 44432 2666664 445566677
Q ss_pred HHHHcCCC
Q 019674 151 DIIACGFD 158 (337)
Q Consensus 151 ~ilA~G~d 158 (337)
++.++|+.
T Consensus 157 d~~~LnI~ 164 (557)
T PLN02946 157 DMAYLHCL 164 (557)
T ss_pred HHHHCCCC
Confidence 88888875
No 112
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=73.13 E-value=3 Score=42.72 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=28.5
Q ss_pred ccccCch-hHHHHHHHHhhh-hCCCCcee-eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQD-PYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd-~~~~l~rdla~k-~~~~~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.|.. ||++--+-...- .|.+.+.. +|+.+| .+.| +|||||.+| .|.+.|
T Consensus 224 ~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~GN-~i~~~d 278 (465)
T TIGR00435 224 GGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSLGN-FFTVRD 278 (465)
T ss_pred ccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccCCC-cCCHHH
Confidence 5677753 454432222222 34322222 444444 4666 899999987 777754
No 113
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=72.85 E-value=3 Score=47.59 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=30.4
Q ss_pred ccccccCchh-HH--HHHHHHhhhhCCCCc--eeeecceecCCCCCCCccCCCCCCCeEe
Q 019674 234 LIPCAIDQDP-YF--RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 288 (337)
Q Consensus 234 ~vp~G~DQd~-~~--~l~rdla~k~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 288 (337)
++.-|.||.. |+ .+..-++ +....| ..+.+.++..-+| +|||||.+| .|.
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~--l~~~~PfK~VlvHG~Vld~dG--~KMSKSlGN-vID 730 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTL--LFDKAPFKNLICNGLVLASDG--KKMSKRLKN-YPD 730 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHH--hcCCCCcceeEEccEEEcCCC--CCcccCCCC-CCC
Confidence 4678999977 33 2222222 222345 2445777777776 899999987 553
No 114
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=72.59 E-value=10 Score=39.03 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=41.7
Q ss_pred ceeEEEecCCC-CCCcchhhHHHH---H-HHHhHHhhCCceEEEE--ecCc----------c-ccccc----CCCHHHH-
Q 019674 85 KFYLYTGRGPS-SEALHLGHLVPF---M-FTKYLQDAFKVPLVIQ--LTDD----------E-KCMWK----NLSVEES- 141 (337)
Q Consensus 85 ~~~vytG~~PT-g~slHlGh~l~~---~-~~~~lQ~~~~~~v~I~--IaD~----------~-a~~~r----~~~~e~i- 141 (337)
.+.+|+ -+|| -+.+||||+.++ . +.++++. .|..|..+ |+|. . +++.+ ..++.++
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~-~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRL-LKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHH-cCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 344553 3455 247999998664 3 4444544 46555443 7776 2 33321 1555553
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 019674 142 QRLARENAKDIIACGFDVT 160 (337)
Q Consensus 142 ~~~~~~~~~~ilA~G~dp~ 160 (337)
+++.....+++.++|+.+.
T Consensus 99 ~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4455566777778887643
No 115
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=72.56 E-value=3.2 Score=41.90 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=40.5
Q ss_pred EEEecCCCCCCcchhhHHHH---HHHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHHHHHHcC
Q 019674 88 LYTGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDIIACG 156 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~---~~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i-~~~~~~~~~~ilA~G 156 (337)
..||-=|-+ .+||||+.++ ..+.++++..|..|..+ ++|.- +++.+ ..+++++ +++..+..+++.++|
T Consensus 40 YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 40 YVCGITPYD-ATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEeCCccCC-CcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345666666 7999998764 34444444457666655 33333 44332 2666664 445556667777777
Q ss_pred CC
Q 019674 157 FD 158 (337)
Q Consensus 157 ~d 158 (337)
+.
T Consensus 119 i~ 120 (411)
T TIGR03447 119 VL 120 (411)
T ss_pred CC
Confidence 54
No 116
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=72.36 E-value=2.7 Score=46.78 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=29.2
Q ss_pred ccccccCchhH-HH--HHHHHhhhhCC-CCc-eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPY-FR--MTRDVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~-~~--l~rdla~k~~~-~~p-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.||-++ .. +..-.| -++. +-| ..+++.++.. +| +|||||.+| .|++.|
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a-~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVA-IFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHHHHH-cCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHH
Confidence 34689999763 22 111111 1111 123 3444656554 55 899999987 887754
No 117
>PLN02610 probable methionyl-tRNA synthetase
Probab=72.25 E-value=2.3 Score=46.46 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=33.0
Q ss_pred cccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
-.+|.|--.++-+ +-=++....++.|..+. +.++ .+.| +|||||.+| .||..+
T Consensus 305 hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~~ 361 (801)
T PLN02610 305 QFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYEG--GKFSKSKGV-GVFGND 361 (801)
T ss_pred EEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecCC--ceecCcCCc-ccCHHH
Confidence 3578887777755 33333333334565554 4444 3555 899999987 888654
No 118
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=72.16 E-value=9.2 Score=36.66 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=20.0
Q ss_pred CCCCCcchhhHHHHH----HHHhHHhhCCceEEEE-ecCccc
Q 019674 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEK 130 (337)
Q Consensus 94 PTg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~-IaD~~a 130 (337)
|+| .+||||+.+.+ +.+++.. -|..|..+ =.|.|.
T Consensus 11 ~~g-~~HiGH~~~~i~~D~i~R~~r~-~G~~v~~~~g~D~~g 50 (312)
T cd00668 11 ANG-SLHLGHALTHIIADFIARYKRM-RGYEVPFLPGWDTHG 50 (312)
T ss_pred CCC-CcchhHHHHHHHHHHHHHHHHh-CCCCCCCCCccCCCC
Confidence 356 79999988742 3444443 35555443 345554
No 119
>PLN02610 probable methionyl-tRNA synthetase
Probab=72.16 E-value=15 Score=40.33 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=45.3
Q ss_pred ceeEEEecC-CCCCCcchhhHHHH----HHHHhHHhhCCceEEEEecCc-cccc-c-----cCCCHHH-HHHHHHHHHHH
Q 019674 85 KFYLYTGRG-PSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLTDD-EKCM-W-----KNLSVEE-SQRLARENAKD 151 (337)
Q Consensus 85 ~~~vytG~~-PTg~slHlGh~l~~----~~~~~lQ~~~~~~v~I~IaD~-~a~~-~-----r~~~~e~-i~~~~~~~~~~ 151 (337)
+++|-|.+- |+| .+||||+.+. ....++++.-|..|..+.|.+ |..- . ...++++ +.++.......
T Consensus 18 ~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~ 96 (801)
T PLN02610 18 NILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEV 96 (801)
T ss_pred CEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455555553 445 7999998842 344556666677777765554 5431 1 1255555 44455555667
Q ss_pred HHHcCCCCC
Q 019674 152 IIACGFDVT 160 (337)
Q Consensus 152 ilA~G~dp~ 160 (337)
+.++|++.+
T Consensus 97 ~~~l~i~~D 105 (801)
T PLN02610 97 YDWFDISFD 105 (801)
T ss_pred HHHcCCccc
Confidence 788888765
No 120
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=71.43 E-value=9.7 Score=37.17 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=24.2
Q ss_pred eeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCccc
Q 019674 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEK 130 (337)
Q Consensus 86 ~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a 130 (337)
+++.+|-= |+| .+||||+.+.. .+.++++..|..|..+ =.|.|+
T Consensus 3 f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG 51 (338)
T cd00818 3 FVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHG 51 (338)
T ss_pred eEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCC
Confidence 44444432 345 79999988653 3334445556666544 345443
No 121
>PLN02563 aminoacyl-tRNA ligase
Probab=71.28 E-value=2.1 Score=47.76 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=10.4
Q ss_pred ccCCCCCCCeEecc
Q 019674 277 KMSASDPNSAIYVT 290 (337)
Q Consensus 277 KMSkS~~nsaI~L~ 290 (337)
|||||.+| .|...
T Consensus 723 KMSKSKGN-vVdP~ 735 (963)
T PLN02563 723 KMSKSRGN-VVNPD 735 (963)
T ss_pred ccccccCC-cCCHH
Confidence 99999987 77643
No 122
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=71.10 E-value=13 Score=36.93 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=25.1
Q ss_pred eeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEe-cCcc
Q 019674 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDE 129 (337)
Q Consensus 86 ~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~I-aD~~ 129 (337)
+++.+|.- |+| .|||||+.+.. ++.++++.-|..|.... .|.|
T Consensus 3 f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 3 FVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred EEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 34444432 456 69999988753 44445665576665553 3444
No 123
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=71.08 E-value=14 Score=38.20 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=43.4
Q ss_pred CceeEE-EecCCCCCCcchhhHHHH---HHHHhHHhhCCceEEEE--ecCc----------c-cccc---c-CCCHHH-H
Q 019674 84 EKFYLY-TGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDD----------E-KCMW---K-NLSVEE-S 141 (337)
Q Consensus 84 ~~~~vy-tG~~PTg~slHlGh~l~~---~~~~~lQ~~~~~~v~I~--IaD~----------~-a~~~---r-~~~~e~-i 141 (337)
+.+.+| ||--+-+ .+||||+.++ ..++++.+..|..|..+ |+|. . +.+. + ..++.+ .
T Consensus 22 ~~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 22 GHVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred CceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 345555 4544445 7999997654 34444344456555544 6776 2 3322 1 155555 3
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 019674 142 QRLARENAKDIIACGFDVT 160 (337)
Q Consensus 142 ~~~~~~~~~~ilA~G~dp~ 160 (337)
.++.....+++.++|+.+.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4455667788888888653
No 124
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=70.60 E-value=25 Score=31.24 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=40.7
Q ss_pred EEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcc-ccc-ccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~-a~~-~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
+|.|.- +.+|+||+-.+..+ +++ ++ .++|+|+... ... .++.+.++..++++..+. ..|+|.+++.|.
T Consensus 3 l~~GrF---~P~H~GHl~~i~~a--~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~---~~~~~~~rv~i~ 72 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVLIA--LEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALS---DAGADLARVHFR 72 (181)
T ss_pred EEeecc---CCCCHHHHHHHHHH--HHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHh---ccCCCcceEEEE
Confidence 455543 35899998665322 333 35 6777776653 222 223777777765544432 358888888665
Q ss_pred e
Q 019674 166 S 166 (337)
Q Consensus 166 ~ 166 (337)
-
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 5
No 125
>PLN02381 valyl-tRNA synthetase
Probab=70.46 E-value=3.6 Score=46.41 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=32.3
Q ss_pred cccccCchhHHHHHHHHhhh--hCCCCce--eeecceecCCCCCCCccCCCCCCCeEecc
Q 019674 235 IPCAIDQDPYFRMTRDVAPR--IGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVT 290 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k--~~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 290 (337)
+..|.||.-. =.+|=++.. +....|. .+.+.++..-+| +|||||.+| .|...
T Consensus 612 ~~~G~Dii~~-W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP~ 667 (1066)
T PLN02381 612 LETGHDILFF-WVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDPL 667 (1066)
T ss_pred eeecchhhhh-HHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCHH
Confidence 4578887632 223333322 3334553 455888888887 899999988 77543
No 126
>PLN02882 aminoacyl-tRNA ligase
Probab=70.30 E-value=3.9 Score=46.58 Aligned_cols=51 Identities=25% Similarity=0.171 Sum_probs=30.5
Q ss_pred ccccccCchh-HHH--HHHHHhhhhCCCCcee-eecceecCCCCCCCccCCCCCCCeEe
Q 019674 234 LIPCAIDQDP-YFR--MTRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIY 288 (337)
Q Consensus 234 ~vp~G~DQd~-~~~--l~rdla~k~~~~~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~ 288 (337)
++.-|.||-. |+- |..-.+ -++.+.+.. +.+.++..=+| +|||||.+| .|.
T Consensus 570 ~i~eG~Dq~RgWf~~ll~~s~~-l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId 624 (1159)
T PLN02882 570 FVAEGLDQTRGWFYTLMVLSTA-LFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD 624 (1159)
T ss_pred EEEEecchhhhHHHHHHHHHHH-hcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence 4678999876 332 222222 134444443 34777665565 899999987 664
No 127
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=70.08 E-value=12 Score=37.79 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=17.4
Q ss_pred eeecceecCCCCCCCccCCCCCCCeEec
Q 019674 262 LIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
...+..+....| +|||||.+| .|.+
T Consensus 275 ~w~H~g~l~~~G--~KMSKSlGN-~i~~ 299 (411)
T TIGR03447 275 HYVHAGMIGLDG--EKMSKSLGN-LVFV 299 (411)
T ss_pred EEEECCEECcCC--CCccCcCCC-CCCH
Confidence 344444556666 899999987 6665
No 128
>PLN02563 aminoacyl-tRNA ligase
Probab=69.49 E-value=13 Score=41.62 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=46.4
Q ss_pred hCCceeEEEecCCCCCC-cchhhHHHHH---HHHhHHhhCCceEEEEecCcc-ccc-cc-----CCCH-HHHHHHHHHHH
Q 019674 82 KGEKFYLYTGRGPSSEA-LHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-KCM-WK-----NLSV-EESQRLARENA 149 (337)
Q Consensus 82 ~~~~~~vytG~~PTg~s-lHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~-a~~-~r-----~~~~-e~i~~~~~~~~ 149 (337)
+++++++.+|+=...+. ||+||+.... ++.++++.-|..|....|=++ +.- .. ..++ +-..++.....
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 34568888898433334 9999987642 444566666777766655443 431 11 1222 23445555666
Q ss_pred HHHHHcCCCCC
Q 019674 150 KDIIACGFDVT 160 (337)
Q Consensus 150 ~~ilA~G~dp~ 160 (337)
+++..+|+.-+
T Consensus 188 ~q~~~lG~s~D 198 (963)
T PLN02563 188 SQLKSLGFSYD 198 (963)
T ss_pred HHHHHhCcEee
Confidence 77778886443
No 129
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=69.06 E-value=3.5 Score=46.18 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=31.2
Q ss_pred ccccccCchhHHHHHHHHhhhh--CCCCce--eeecceecCCCCCCCccCCCCCCCeEec
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~--~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
+...|.||-.+ =.+|=++..+ ..+.|. .+.|.++..-+| +|||||.+| .|..
T Consensus 541 ~~~~G~Dii~~-W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vIdP 596 (995)
T PTZ00419 541 LLETGSDILFF-WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VIDP 596 (995)
T ss_pred EEEechhHHhH-HHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCCh
Confidence 34568876541 2233333332 234563 455788877776 899999988 6643
No 130
>PLN02224 methionine-tRNA ligase
Probab=68.90 E-value=3.6 Score=43.69 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=32.0
Q ss_pred ccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.|--+++-+ +.-+ ..+.+.|..+. +.++ .+.| +|||||.+| .|++.|
T Consensus 326 ~iGKDii~fH~i~wpa~l~--~~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 326 LIGKDILRFHAVYWPAMLM--SAGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFE 379 (616)
T ss_pred EEeecccccHHHHHHHHHH--HCCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHH
Confidence 368887776554 3322 23555565444 5554 4565 899999987 888765
No 131
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=66.76 E-value=4.9 Score=41.49 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=18.1
Q ss_pred eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...+.-+..+.| +|||||.+| .|.+.|
T Consensus 266 ~w~h~g~l~~~g--~KMSKSlGN-~itl~d 292 (490)
T PRK14536 266 YWLHHEFLLMNK--GKMSKSAGQ-FLTLSS 292 (490)
T ss_pred EEEEcCEEeecC--ccccccCCC-cccHHH
Confidence 333433445666 899999987 888743
No 132
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.29 E-value=3.1 Score=43.60 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=31.0
Q ss_pred ccccCchhHHHH---HHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYFRM---TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~~l---~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.|--.++-+ +--++ .+.+.|..+.+.-.-.+.| +|||||.+| .||..+
T Consensus 293 fIGKDii~FHav~wPamL~~--~~~~lP~~i~ahg~l~~~G--~KmSKSrG~-~V~~~~ 346 (558)
T COG0143 293 FIGKDIIRFHAVYWPAMLMA--AGLPLPTRIFAHGFLTLEG--QKMSKSRGN-VVDPDE 346 (558)
T ss_pred EeccccCcchhhHHHHHHHh--CCCCCCCEEEeeeeEEECC--ccccccCCc-EEeHHH
Confidence 467776666555 22222 2334666665333344555 899999987 999765
No 133
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=63.94 E-value=5.1 Score=38.72 Aligned_cols=51 Identities=24% Similarity=0.157 Sum_probs=22.0
Q ss_pred cccCc-hhHHHHHHHHhhhhCCCCce--eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 237 CAIDQ-DPYFRMTRDVAPRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 237 ~G~DQ-d~~~~l~rdla~k~~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+|+|- -||++=-+-.++-...++.+ -+|+.+| .+.| +|||||.+| .|.+.|
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l-~~~g--~KMSKSlgN-~~~i~d 265 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHL-NVDG--EKMSKSLGN-FITIRD 265 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--E-EETT--CE--TTTT----BHHH
T ss_pred cccccCCCCccchHHHHHHhhCchHHHHHHHHHHH-hhcC--ccccccCCC-EEEHHH
Confidence 44442 35665543334333222222 2444444 3355 899999987 787755
No 134
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=63.48 E-value=2.9 Score=45.98 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=11.1
Q ss_pred ccCCCCCCCeEeccC
Q 019674 277 KMSASDPNSAIYVTD 291 (337)
Q Consensus 277 KMSkS~~nsaI~L~D 291 (337)
|||||.+| .|.+.|
T Consensus 604 KMSKS~GN-~v~p~~ 617 (842)
T TIGR00396 604 KMSKSKGN-GIDPQE 617 (842)
T ss_pred hhhhcCCC-cCCHHH
Confidence 99999987 776544
No 135
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=63.09 E-value=18 Score=38.93 Aligned_cols=76 Identities=22% Similarity=0.245 Sum_probs=44.1
Q ss_pred CceeEEEecCCC-CCCcchhhHHHH---HHHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHHH
Q 019674 84 EKFYLYTGRGPS-SEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKD 151 (337)
Q Consensus 84 ~~~~vytG~~PT-g~slHlGh~l~~---~~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i-~~~~~~~~~~ 151 (337)
+.+.+|+ -+|| -+.+||||+.++ ..++++.+..|..|..+ ++|.- +.+.+ ..++.++ +++..+..++
T Consensus 247 ~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 247 ENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455553 3455 247999998664 34444444457666554 55544 44432 2566664 4455667778
Q ss_pred HHHcCCCCC
Q 019674 152 IIACGFDVT 160 (337)
Q Consensus 152 ilA~G~dp~ 160 (337)
+.++|+.+.
T Consensus 326 ~~~LnI~~p 334 (699)
T PRK14535 326 ADALGVLRP 334 (699)
T ss_pred HHHcCCCCC
Confidence 888888654
No 136
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.66 E-value=25 Score=38.62 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=45.3
Q ss_pred CceeEEEecC-CCCCCcchhhHHHH---HHHHhHHhhCCceEEEEecCcccccc--------cCCCHH-HHHHHHHHHHH
Q 019674 84 EKFYLYTGRG-PSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLTDDEKCMW--------KNLSVE-ESQRLARENAK 150 (337)
Q Consensus 84 ~~~~vytG~~-PTg~slHlGh~l~~---~~~~~lQ~~~~~~v~I~IaD~~a~~~--------r~~~~e-~i~~~~~~~~~ 150 (337)
+++++..=|= ||| .||+||.-.. .++.++++.-|..|.--+| ||++=- +..++. =...|..++.+
T Consensus 34 ~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4677766663 787 6999997654 3555667765666544333 444310 111222 24455566667
Q ss_pred HHHHcCCCCCce
Q 019674 151 DIIACGFDVTKT 162 (337)
Q Consensus 151 ~ilA~G~dp~k~ 162 (337)
++.++||+-|-.
T Consensus 112 qlk~lG~siDW~ 123 (814)
T COG0495 112 QLKSLGFSIDWR 123 (814)
T ss_pred HHHHhCCccccc
Confidence 888899876644
No 137
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=62.62 E-value=19 Score=38.61 Aligned_cols=75 Identities=28% Similarity=0.415 Sum_probs=42.7
Q ss_pred CceeEEEecCCC-CCCcchhhHHH---HH-HHHhHHhhCCceEEEE--ecCcc-ccccc----CCC-HHH-HHHHHHHHH
Q 019674 84 EKFYLYTGRGPS-SEALHLGHLVP---FM-FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLS-VEE-SQRLARENA 149 (337)
Q Consensus 84 ~~~~vytG~~PT-g~slHlGh~l~---~~-~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~-~e~-i~~~~~~~~ 149 (337)
+.+.+|+ -+|| -+.+||||+-+ +. +.++|++.+|..|..+ |+|.- +++.+ .++ +.+ .+.+..+..
T Consensus 59 ~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 59 RQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444443 3455 24799999654 44 4445654667555544 66655 44432 155 555 344555667
Q ss_pred HHHHHcCCCC
Q 019674 150 KDIIACGFDV 159 (337)
Q Consensus 150 ~~ilA~G~dp 159 (337)
+++.++|+.+
T Consensus 138 ~d~~~Lni~~ 147 (651)
T PTZ00399 138 EDMKALNVRP 147 (651)
T ss_pred HHHHHcCCCC
Confidence 7777887754
No 138
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=60.05 E-value=13 Score=40.92 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=36.3
Q ss_pred hhcCcccccCCHHHHHHHHhhCCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 62 ~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
.+.|+|....+ ++++++++++|.- +|| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 19 ~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 19 EKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 34677655322 2346688888764 456 79999988652 444466655777666655554
No 139
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.98 E-value=32 Score=36.42 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=39.8
Q ss_pred EEEecC--CCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH-cCCCCCceE
Q 019674 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTKTF 163 (337)
Q Consensus 88 vytG~~--PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA-~G~dp~k~~ 163 (337)
|+|-|- |-| .|||||.-.+. +++ +.++.|...++- =|++ ++|.=++---+-|+++.+ +|+.|=|++
T Consensus 249 V~TRFPPEPNG-~LHIGHaKAIn-vNFgyAk~~~G~cyLR-fDDT-------NPEkEee~yf~sI~e~V~WLG~~P~kvT 318 (764)
T KOG1148|consen 249 VVTRFPPEPNG-ILHIGHAKAIN-VNFGYAKAHGGVCYLR-FDDT-------NPEKEEEEYFESIKEMVAWLGFEPYKVT 318 (764)
T ss_pred eEEeCCCCCCc-eeeecchhhee-echhhhhhhCCeEEEe-cCCC-------CcchhhHHHHHHHHHHHHHhCCCceeee
Confidence 778775 557 89999987763 443 666655545543 2322 122111111233455555 699985543
Q ss_pred EEeCcccc
Q 019674 164 IFSDFDYV 171 (337)
Q Consensus 164 I~~~s~~~ 171 (337)
.+|||.
T Consensus 319 --ysSDyF 324 (764)
T KOG1148|consen 319 --YSSDYF 324 (764)
T ss_pred --cchhHH
Confidence 456665
No 140
>PLN02946 cysteine-tRNA ligase
Probab=58.90 E-value=4.1 Score=42.74 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.3
Q ss_pred eeecceecCCCCCCCccCCCCCCCeEecc
Q 019674 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290 (337)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 290 (337)
-+|+.+|. +.| +|||||.+| .|.+.
T Consensus 311 W~H~G~v~-~~G--~KMSKSlGN-~itl~ 335 (557)
T PLN02946 311 WIHNGFVT-VDS--EKMSKSLGN-FFTIR 335 (557)
T ss_pred eeEeeEEE-eCC--CCcCCcCCC-cCCHH
Confidence 46666766 666 899999987 66653
No 141
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=58.70 E-value=87 Score=27.16 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=33.4
Q ss_pred CCcchhhHHHHHHHHhHHhhCCceEEEEecC-cccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcc
Q 019674 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 169 (337)
Q Consensus 97 ~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD-~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~ 169 (337)
+.+|+||+-.+..+. +. .+ .++|+++. ......+. .+.++-.++++..+ ...|++.+++.+....+
T Consensus 9 dP~H~GHl~~i~~a~--~~-~d-~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~---~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 9 QPFHLGHLKVIKWIL--EE-VD-ELIIGIGSAQESHTLENPFTAGERVLMIRRAL---EEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CCCCHHHHHHHHHHH--HH-CC-EEEEEecCCCCCCCCCCCCCHHHHHHHHHHHH---HhcCCCcCeEEEEecCC
Confidence 349999986553322 22 23 45665543 33332222 66666554433222 22356666776655443
No 142
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.64 E-value=20 Score=37.04 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=33.6
Q ss_pred CCceeEEEecCCC-CCCcchhh---HHHHHHHHh-HHhhCCceEEEE--ecCcc-cccc
Q 019674 83 GEKFYLYTGRGPS-SEALHLGH---LVPFMFTKY-LQDAFKVPLVIQ--LTDDE-KCMW 133 (337)
Q Consensus 83 ~~~~~vytG~~PT-g~slHlGh---~l~~~~~~~-lQ~~~~~~v~I~--IaD~~-a~~~ 133 (337)
++.+..|+ -+|| -++-|+|| |+.+.++++ |++.+|..|+.. |+|.. +++.
T Consensus 53 ~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~ 110 (586)
T KOG2007|consen 53 GNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIK 110 (586)
T ss_pred CCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHH
Confidence 44455554 4677 46799999 466665554 888888877665 78866 4443
No 143
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=58.06 E-value=38 Score=35.81 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=26.1
Q ss_pred hhCCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec
Q 019674 81 EKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (337)
Q Consensus 81 ~~~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia 126 (337)
+++++|++..|.= +|| .||+||.+... ++.++++.-|..|....|
T Consensus 20 ~~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G 68 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFPPG 68 (601)
T ss_dssp TTSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCCCC
Confidence 3456677777763 346 79999998763 334456655776666533
No 144
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.10 E-value=16 Score=40.05 Aligned_cols=54 Identities=26% Similarity=0.265 Sum_probs=35.1
Q ss_pred ccccccCchhHHHHHHHHh--hhhCCCCce--eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRMTRDVA--PRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla--~k~~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
++--|-| -=+|=.||-+. -++...-|. .+.|+++..-+| .|||||.+| .|.-.|
T Consensus 549 llETG~D-ILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSLGN-VIDPlD 606 (995)
T KOG0432|consen 549 LLETGHD-ILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSLGN-VIDPLD 606 (995)
T ss_pred hhhcCch-HHHHHHHHHHHhhhhhcCCCCchheeechhhccccc--cccchhhcc-ccCHHH
Confidence 3456777 55555555543 334344453 456889999998 899999988 775444
No 145
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.82 E-value=9.9 Score=41.86 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=32.2
Q ss_pred ccccccCchhHHHHHHHHhhhh--CCCCce--eeecceecCCCCCCCccCCCCCCCeEe
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 288 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~--~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~ 288 (337)
+.+.|-| -=++=.+|-+...+ ....|. ...+.++-.-+| +|||||.+| .|-
T Consensus 481 llvtG~D-IIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vID 535 (877)
T COG0525 481 LLVTGHD-IIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQG--RKMSKSKGN-VID 535 (877)
T ss_pred cccccch-hhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCC--CCCcccCCC-cCC
Confidence 3467887 44444566666543 334553 233667777776 999999988 664
No 146
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=56.60 E-value=7.2 Score=41.73 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=28.3
Q ss_pred ccccCch--hHH--HHHHHHhhhhCC-CC-ceeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQD--PYF--RMTRDVAPRIGY-HK-PALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd--~~~--~l~rdla~k~~~-~~-p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
-+|+| . ||+ ++|.--|- +|. +- -..+|+.+| .+.| +|||||.+| .|.+.|
T Consensus 273 ~gG~D-L~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~L-~i~G--~KMSKSLGN-fItp~d 328 (651)
T PTZ00399 273 SGGID-LKFPHHDNELAQSEAY-FDKHQWVNYFLHSGHL-HIKG--LKMSKSLKN-FITIRQ 328 (651)
T ss_pred ccCCC-CCCCcchhHHHHHHHh-hCCCCCCcEEEEEEEE-Eecc--chhhhcCCC-cccHHH
Confidence 46777 4 664 33433222 232 11 234554553 4565 899999987 887765
No 147
>PLN02943 aminoacyl-tRNA ligase
Probab=56.07 E-value=35 Score=38.28 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=30.3
Q ss_pred hCCceeEEEe-cCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 82 KGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 82 ~~~~~~vytG-~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
++++|.+.+| =-+|| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 86 ~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 86 GGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred CCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 3456777776 45677 69999988652 334455555776666655544
No 148
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=55.63 E-value=5 Score=42.98 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=18.8
Q ss_pred eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
-+|+.+|. +.| +|||||.+| .|.+.|
T Consensus 496 WmHnG~V~-vdG--eKMSKSLGN-~it~~d 521 (699)
T PRK14535 496 WLHNGFIR-VDG--EKMSKSLGN-FFTIRE 521 (699)
T ss_pred EEECCeEe-eCC--CccCCCCCC-cCCHHH
Confidence 45666665 666 899999987 666644
No 149
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=52.35 E-value=31 Score=38.75 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=30.5
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
++++++.+|.= ||| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 59 ~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 59 GKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred CCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 45577777764 456 79999988652 444566666777766656555
No 150
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=51.61 E-value=1.4e+02 Score=27.07 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=35.4
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcc-ccccc-CCCHHHHHHHHHHHH
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWK-NLSVEESQRLARENA 149 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~-a~~~r-~~~~e~i~~~~~~~~ 149 (337)
..+|.|+- ..+|+||+-.+. .-+.++ + .++|.||--. +.+-+ +.|+.+-..+.+..+
T Consensus 6 ~~v~iGRF---QPfH~GHl~~I~--~al~~~-d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL 64 (196)
T PRK13793 6 YLVFIGRF---QPFHLAHMQTIE--IALQQS-R-YVILALGSAQMERNIKNPFLAIEREQMILSNF 64 (196)
T ss_pred EEEEEecC---CCCcHHHHHHHH--HHHHhC-C-EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 56888875 349999985542 224443 4 6777777654 33333 388888776555554
No 151
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=50.83 E-value=77 Score=31.00 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=38.1
Q ss_pred ceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCc-cccc-ccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD-EKCM-WKNLSVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 85 ~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~-~a~~-~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
...+|.|.- +.+|+||+..+..+ ++. ++ .++|+++.. .... .+..+.++..++++..++ +++..++
T Consensus 7 ~~~~~~G~F---~P~H~GHl~~i~~a--~~~-~d-~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~-----~~~~~r~ 74 (340)
T PRK05379 7 DYLVFIGRF---QPFHNGHLAVIREA--LSR-AK-KVIVLIGSADLARSIKNPFSFEERAQMIRAALA-----GIDLARV 74 (340)
T ss_pred eEEEEeecc---CCCCHHHHHHHHHH--HHH-CC-EEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhh-----cCCCceE
Confidence 456777754 35999998665322 222 33 577777632 2222 233777776655443332 5655565
Q ss_pred EEE
Q 019674 163 FIF 165 (337)
Q Consensus 163 ~I~ 165 (337)
.|.
T Consensus 75 ~~~ 77 (340)
T PRK05379 75 TIR 77 (340)
T ss_pred EEE
Confidence 444
No 152
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=49.16 E-value=8.2 Score=42.29 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=26.2
Q ss_pred ccccccCchh-HHHHHHHHhhh---h---CCCCce--eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDP-YFRMTRDVAPR---I---GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~-~~~l~rdla~k---~---~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.||.. |+-.+|=.... + ....|. .+++.++ |||||.+| .|...|
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~~ 583 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPDD 583 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHHH
Confidence 3568888853 22223322111 1 123442 3445555 99999988 665543
No 153
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=48.98 E-value=10 Score=39.14 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=17.5
Q ss_pred eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 263 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+|+.+| .+.| +|||||.+| .|.+.|
T Consensus 268 ~H~g~l-~~~g--~KMSKSlGN-~i~l~d 292 (481)
T PRK14534 268 VHGEFL-IMEY--EKMSKSNNN-FITIKD 292 (481)
T ss_pred EEecEE-EecC--ceecccCCC-cccHHH
Confidence 445444 4565 899999987 888743
No 154
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=48.40 E-value=44 Score=37.02 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=34.4
Q ss_pred hhcCcccccCCHHHHHHHHhhCCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 62 ~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
.+.|+|.... .+++++.+.+|.= +|| .||+||.+... ++.++++.-|..|...-|=+|
T Consensus 23 ~~~~~f~~~~---------~~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 23 EEKGYFKPDD---------NSKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHCCCcccCc---------CCCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 3467765532 1345666666543 356 79999998652 344456655666655555554
No 155
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=47.82 E-value=19 Score=34.90 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
.||| .|||||+..++ ..| +.+..|..+++-|=|.-. .... .+.....+.++..+|++++.- ++.||+-.
T Consensus 9 sPtG-~lHiG~~r~al-~n~~~Ar~~~G~~iLRieDtD~----~R~~---~~~~~~i~~~L~wlGl~~D~~-~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTAL-LNYLFARKYGGKFILRIEDTDP----ERCR---PEFYDAILEDLRWLGLEWDYG-PYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHH-HHHHHHHHTTSEEEEEEETSST----TTCH---HHHHHHHHHHHHHHT---STC-EEEGGGGH
T ss_pred CCCC-CcccchhHHHH-HHHHHHhccCceEEEecccccc----ccch---hhHHHHHHhheeEEEEecCCe-EEeHHHHH
Confidence 3678 69999999995 555 667778888887777432 1222 233345667777789988733 44566544
No 156
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.27 E-value=21 Score=37.69 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=28.3
Q ss_pred EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCcccc
Q 019674 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDEKC 131 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~a~ 131 (337)
|+.--||++ |||||+-..+ .+..+-+..|..|+-. |+||=..
T Consensus 123 ~sSaNptkp-lHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q 169 (577)
T COG0018 123 YSSANPTGP-LHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQ 169 (577)
T ss_pred EeCCCCCCC-cccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHH
Confidence 888889995 9999997664 3333334446666554 7887543
No 157
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=46.15 E-value=30 Score=34.06 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=25.3
Q ss_pred EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCccc
Q 019674 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDEK 130 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~a 130 (337)
|+.-=|++ .||+||+-..+ .+..+-++.|..|+-. |+||=.
T Consensus 26 ~sSpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 26 FSSPNPTK-PLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp E---BTTS-S-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred ecCCCCCC-CCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 88888998 59999997654 3333444557777654 788754
No 158
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=45.18 E-value=24 Score=37.04 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCcc
Q 019674 87 YLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE 129 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~ 129 (337)
.=|++--|++ .||+||+-..+ .+..+.++.|..|.-. |+||=
T Consensus 116 ve~~spn~~~-~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 116 IEFSSANPAG-PLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EEecCCCCCC-CCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 3478888898 69999987764 2333344456665532 67764
No 159
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=43.41 E-value=35 Score=37.71 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=28.5
Q ss_pred hCCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec
Q 019674 82 KGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (337)
Q Consensus 82 ~~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia 126 (337)
.+++++++.|.= ||| .||+||.+... +..++++.-|..|....|
T Consensus 34 ~~~~f~i~~~pPy~nG-~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 34 GKPEFIFHDGPPYANG-SIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCCeEEecCCCCCCC-CccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 345688888883 236 79999988652 444566665666655444
No 160
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.98 E-value=44 Score=35.95 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=36.5
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecC-CCCCCcchhhHHH---HHHHHhHHhhCCceEEE
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVP---FMFTKYLQDAFKVPLVI 123 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~-PTg~slHlGh~l~---~~~~~~lQ~~~~~~v~I 123 (337)
+..+.+|.++.. + .-.++++ ||++=|- ||| .||+||... ...+.++|+.-|-.|+=
T Consensus 40 ~~~~~~~~~~~~-~------~d~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~laRf~rm~GynVih 99 (876)
T KOG0435|consen 40 KQYLKDGFPFSK-D------SDKSKKK-YILSMFPYPSG-ALHIGHVRVYTISDILARFYRMKGYNVIH 99 (876)
T ss_pred HHHHhcCCcccc-c------cccCCCc-eEEEecCCCCC-cccccceEEEEehHHHHHHHHhcCceeec
Confidence 446677777764 1 1134444 8888884 888 599999754 34677788875655543
No 161
>PLN02381 valyl-tRNA synthetase
Probab=42.51 E-value=29 Score=39.35 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=30.4
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
++++++.+|.- +|| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 127 ~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 127 KPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred CCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 45688888875 445 79999988652 444466666777666655544
No 162
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=42.17 E-value=26 Score=39.74 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=30.9
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
+++|+++.|.- +|| .||+||.+... ++.++++.-|..|...-|=+|
T Consensus 47 ~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 47 RPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred CCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 45688888875 456 79999998652 444466665777766655555
No 163
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.74 E-value=41 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccccCchhHHHH-HHHH---hhhhCC---CCce--eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYFRM-TRDV---APRIGY---HKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~~l-~rdl---a~k~~~---~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|+|+-..+-+ +|=. ..-.|+ .+|. .+...++.+-.| +|||||.+| .|-+++
T Consensus 531 igG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g--~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 531 IGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEG--EKMSKSKGN-VVDPEE 592 (814)
T ss_pred ecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCC--CccccccCC-CCCHHH
Confidence 478887775544 3322 111222 2332 233445554444 799999987 665443
No 164
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=41.08 E-value=49 Score=33.77 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=34.3
Q ss_pred hhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 252 a~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
-+-||.+.|...|-++|..-+| .|.||-.+ .+++.+ =|+.+-+=|-.
T Consensus 258 YkAfgW~pPkFaHlpLl~n~d~--sKLSKRqg--D~~vs~~~e~G~LPeallN~ial 310 (524)
T KOG1149|consen 258 YKAFGWQPPKFAHLPLLLNPDG--SKLSKRQG--DASVSHYREQGYLPEALLNYIAL 310 (524)
T ss_pred HHHhCCCCCceeeeeeeecCCc--chhhhhcC--cchHHHHHHcCCChHHHHHHHHH
Confidence 4568889999999988888887 89999975 444443 26677666633
No 165
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=40.82 E-value=29 Score=37.93 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=29.1
Q ss_pred CCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 83 ~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
++++++.+|. -|+| .|||||+.... ++.++++.-|..|....|=+|
T Consensus 37 ~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 37 KPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred CCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 3567777644 4567 69999988753 344456655777766555444
No 166
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=40.57 E-value=45 Score=38.40 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=28.7
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCc
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~ 128 (337)
+++|.+|.|-= +|| .||+||.+... ++.++++.-|..|....|=+
T Consensus 101 ~~~Fv~~~gPPyanG-~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD 149 (1205)
T PTZ00427 101 KKAYIFYDGPPFATG-LPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWD 149 (1205)
T ss_pred CCcEEEecCCCCCCC-CcchhHHHHHHHHHHHHHHHHcCCCeeccCCccC
Confidence 45577788864 345 79999998642 34445665576666554433
No 167
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=40.05 E-value=21 Score=40.10 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=27.0
Q ss_pred hCCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE
Q 019674 82 KGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (337)
Q Consensus 82 ~~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~ 124 (337)
.+++++++.|.= ||| .||+||.+... ++.++++.-|..|.-.
T Consensus 39 ~~~~f~i~~~PPy~nG-~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 39 GGPEFVFYDGPPTANG-LPHYGHLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred CCCCEEEeCCCCCCCC-CccHhhhHhhHHHHHHHHHHHhCCCcccCc
Confidence 346688888874 456 79999998652 3444555545555444
No 168
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.90 E-value=24 Score=38.92 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=24.0
Q ss_pred CCCCcchhhHHHH--H-HHHhHHhhCCceEEEEecCccc
Q 019674 95 SSEALHLGHLVPF--M-FTKYLQDAFKVPLVIQLTDDEK 130 (337)
Q Consensus 95 Tg~slHlGh~l~~--~-~~~~lQ~~~~~~v~I~IaD~~a 130 (337)
|| +||+||.+.. + ++.++++.-|..+..+-|=+||
T Consensus 45 TG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 45 TG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 77 8999998754 2 4445666557777777666664
No 169
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=38.95 E-value=19 Score=35.91 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhCCCCceeeecc---eecCCCCCCCccCCCCC--CCeE
Q 019674 245 FRMTRDVAPRIGYHKPALIESS---FFPALQGETGKMSASDP--NSAI 287 (337)
Q Consensus 245 ~~l~rdla~k~~~~~p~~l~~~---~lp~L~G~~~KMSkS~~--nsaI 287 (337)
..++|++..+..+..|..++.+ ..+|.++ ++|||.|.+ +++|
T Consensus 195 ~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i 241 (377)
T TIGR00234 195 RDLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQ 241 (377)
T ss_pred HHHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhh
Confidence 4589999887777777777765 7889886 479999987 4444
No 170
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.35 E-value=31 Score=37.46 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=33.2
Q ss_pred cccccCch-hHHHH--HHHHhhhhCCCCce--eeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHH
Q 019674 235 IPCAIDQD-PYFRM--TRDVAPRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299 (337)
Q Consensus 235 vp~G~DQd-~~~~l--~rdla~k~~~~~p~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~K 299 (337)
..=|.||. +||.- ---+|.+-. .|. .+.+.|.-.=.| .|||||.+| .| +|+.|.++
T Consensus 570 ~LEG~DQ~rGWFQSsLLTsvA~q~k--APYk~vivHGFtlDE~G--~KMSKSlGN-Vi----dP~~v~~G 630 (937)
T KOG0433|consen 570 YLEGVDQFRGWFQSSLLTSVAVQNK--APYKKVIVHGFTLDENG--NKMSKSLGN-VV----DPTMVTDG 630 (937)
T ss_pred EEecchhcchHHHHHHHHHHHHhcc--CCchheeeeeeEecCCc--cchhhcccC-cC----CHHHHhCC
Confidence 44688885 57754 234454422 343 445666655555 899999987 44 45555444
No 171
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=36.68 E-value=1.1e+02 Score=26.28 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=27.8
Q ss_pred cccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCC
Q 019674 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~ 282 (337)
+-+|.||..-.....++-++.|...-....-+++-.-. +.|.|+|.
T Consensus 92 ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~~~--~~~~SSt~ 137 (153)
T PRK00777 92 IVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAED--GKPISSTR 137 (153)
T ss_pred EEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeecCC--CCeeeHHH
Confidence 45788887776667777777776432333344443322 47888873
No 172
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=36.51 E-value=3.3e+02 Score=26.73 Aligned_cols=95 Identities=20% Similarity=0.429 Sum_probs=49.2
Q ss_pred CcccccCcccCCCcccHHHHHHHhCCC-------CC-CHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhh-CC
Q 019674 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQ-------RL-DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK-GE 84 (337)
Q Consensus 14 ~~~~~p~~~~~~~~~dy~kl~~~fg~~-------~i-~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~-~~ 84 (337)
++.-|||+... -++++++|+. -+ +-+||+.+-+ ||+| -++++|. -+..+.+...+.+.+ |.
T Consensus 91 ~~~stpfd~~s------vd~l~~~~v~~~KIaS~~~~n~pLL~~~A~-~gkP--vilStGm-atl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 91 EFLSTPFDLES------ADFLEDLGVPRFKIPSGEITNAPLLKKIAR-FGKP--VILSTGM-ATLEEIEAAVGVLRDAGT 160 (329)
T ss_pred cEEEEeCCHHH------HHHHHhcCCCEEEECcccccCHHHHHHHHh-cCCc--EEEECCC-CCHHHHHHHHHHHHHcCC
Confidence 45667776553 2334445432 22 2236666655 5664 5688888 344455555555544 33
Q ss_pred c---eeE-EEec-CCCCCCcchhhHHHHHHHHhHHhhCCceEEE
Q 019674 85 K---FYL-YTGR-GPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123 (337)
Q Consensus 85 ~---~~v-ytG~-~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I 123 (337)
+ +.+ -|.. -|+.. . -+-+..+.+|++.+++||-.
T Consensus 161 ~~~~i~llhC~s~YP~~~--~---~~nL~~I~~Lk~~f~~pVG~ 199 (329)
T TIGR03569 161 PDSNITLLHCTTEYPAPF--E---DVNLNAMDTLKEAFDLPVGY 199 (329)
T ss_pred CcCcEEEEEECCCCCCCc--c---cCCHHHHHHHHHHhCCCEEE
Confidence 2 433 1333 35532 2 23344556778878887764
No 173
>PLN02843 isoleucyl-tRNA synthetase
Probab=36.49 E-value=95 Score=34.98 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=26.8
Q ss_pred hCCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec
Q 019674 82 KGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (337)
Q Consensus 82 ~~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia 126 (337)
++++|++..|.- ++| .||+||.+... ++.++++.-|..+....|
T Consensus 30 ~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG 77 (974)
T PLN02843 30 NGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHYVPG 77 (974)
T ss_pred CCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCccccCCc
Confidence 346677777763 456 79999998653 333455554655544433
No 174
>PLN02882 aminoacyl-tRNA ligase
Probab=33.91 E-value=61 Score=37.23 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=27.6
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia 126 (337)
++++++|.|-= +|| .+|+||.+... ++.++++.-|..|....|
T Consensus 37 ~~~f~~~dgPPyanG-~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 37 LPEYIFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred CCCEEEeCCCCCCCC-cchhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 45688888864 345 79999988652 344466655666655433
No 175
>COG2989 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.78 E-value=23 Score=36.94 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.2
Q ss_pred eEeccCCHH-HHHHHHhhcCcCCCCchHHHHh
Q 019674 286 AIYVTDSAK-AIKNKINKYAFSGGQESVELHR 316 (337)
Q Consensus 286 aI~L~D~p~-~i~~KI~k~A~t~g~~t~e~~~ 316 (337)
+|||.|||. ...+|-|+ |.|.|+.-++..|
T Consensus 451 aIYmHDTP~kslF~r~mR-alSsGCVRvq~~r 481 (561)
T COG2989 451 AIYLHDTPSKSLFNRDMR-ALSSGCVRVQKPR 481 (561)
T ss_pred ceeeecCcchhhhhhHHH-HhccCceEecCHH
Confidence 999999997 67899999 9999885444433
No 176
>PLN02286 arginine-tRNA ligase
Probab=32.46 E-value=39 Score=35.60 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=26.5
Q ss_pred EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCcc
Q 019674 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE 129 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~ 129 (337)
|+.-=||+ .||+||+-..+ .+..+-++.|..|+-. |+||=
T Consensus 123 fsSpNp~k-plHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAK-EMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCC-CCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 78888998 59999987653 3333444456666543 67764
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=32.29 E-value=21 Score=33.70 Aligned_cols=93 Identities=16% Similarity=0.368 Sum_probs=59.8
Q ss_pred cccccCcccC-CCc-----ccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeE
Q 019674 15 QVVSPWEVSS-SGK-----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88 (337)
Q Consensus 15 ~~~~p~~~~~-~~~-----~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~v 88 (337)
..+|||+-.- +.. -|=..+++.|+.+.+|- ++ +.|-+|-.-|-.++.+-.+++...+..|...+-
T Consensus 173 a~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa-Ii--------HDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 173 AKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA-II--------HDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred eccCCCCccccccccEEecccHHHHHhcCCccccce-Ee--------eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 4689997643 111 25667888899988873 33 235667777788888777788777889999999
Q ss_pred EEecCCCCCCcchhhHHHHHHHHhHHhhCCce
Q 019674 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVP 120 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~ 120 (337)
|+|- |.. .-| |-=++--....|.++ |..
T Consensus 244 YvG~-Pg~-ryr-G~d~~~gVa~RLr~v-GF~ 271 (287)
T COG2521 244 YVGN-PGK-RYR-GLDLPKGVAERLRRV-GFE 271 (287)
T ss_pred EeCC-CCc-ccc-cCChhHHHHHHHHhc-Cce
Confidence 9995 332 122 222333355667665 543
No 178
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=31.03 E-value=52 Score=34.54 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=27.6
Q ss_pred EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCccc
Q 019674 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDEK 130 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~a 130 (337)
|+.--|++ .||+||+-..+ .+..+-++.|..|+-. |+||=.
T Consensus 119 ~sSpNp~k-plHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAK-PFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCC-CcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 78888998 59999987653 3334444456666543 777753
No 179
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=28.74 E-value=5.4e+02 Score=24.84 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhC
Q 019674 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (337)
Q Consensus 38 g~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~ 117 (337)
|.-+=+++...-|+.|++.. |. + |=.--.+..++.++.+.++ .++.++.|+=|+. ..|=+---.+ +..+++..
T Consensus 57 GtCKSa~~~~sDLe~l~~~t-~~-I-R~Y~sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~ti-l~ay~~~~- 129 (305)
T COG5309 57 GTCKSADQVASDLELLASYT-HS-I-RTYGSDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKTI-LSAYLPYN- 129 (305)
T ss_pred CCCcCHHHHHhHHHHhccCC-ce-E-EEeeccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHHH-HHHHhccC-
Confidence 44455556666777777663 42 2 2222345568888887776 5699999999996 5775543222 45555543
Q ss_pred CceE-EEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCC
Q 019674 118 KVPL-VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV 159 (337)
Q Consensus 118 ~~~v-~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp 159 (337)
+-+. .-++.--|+.-.+.++.+++-+++......+.+.|+|-
T Consensus 130 ~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 130 GWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred CCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3322 22233456665445999999988866666666788874
No 180
>PLN02660 pantoate--beta-alanine ligase
Probab=28.63 E-value=71 Score=30.70 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcC
Q 019674 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306 (337)
Q Consensus 242 d~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t 306 (337)
.|-..+.|.+++.++.+ ...+-.+++.--+| ==||+- ..||+++..+....|-+ |.+
T Consensus 157 ~QQl~vIrrmV~dL~~~-v~I~~~ptvRe~dG--LA~SSR----N~yLs~~eR~~A~~l~~-~L~ 213 (284)
T PLN02660 157 YQQWRVIRRMVRDLDFD-IEVVGSPIVREADG--LAMSSR----NVRLSAEEREKALSISR-SLA 213 (284)
T ss_pred HHHHHHHHHHHHHcCCC-ceEEeeCceECCCC--Ceeccc----cccCCHHHHHHHHHHHH-HHH
Confidence 66677788999998873 33445888888777 467655 35787776666655555 443
No 181
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=28.47 E-value=5.1e+02 Score=24.43 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=67.6
Q ss_pred cccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcc--------c--ccCCHHHHHHHHhh--
Q 019674 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF--------F--AHRDLNDILDAYEK-- 82 (337)
Q Consensus 15 ~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~--------~--~~~d~~~ll~~~~~-- 82 (337)
..+|||+-++ .||++.+.+ +++++-+-.| . .|++ + +..+..++++...+
T Consensus 10 a~~TPf~~dg--~iD~~~~~~----------li~~l~~~~G--v-----~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~ 70 (293)
T PRK04147 10 ALLTPFDEDG--QIDEQGLRR----------LVRFNIEKQG--I-----DGLYVGGSTGEAFLLSTEEKKQVLEIVAEEA 70 (293)
T ss_pred eeECcCCCCC--CcCHHHHHH----------HHHHHHhcCC--C-----CEEEECCCccccccCCHHHHHHHHHHHHHHh
Confidence 4689998887 899988765 3433322001 1 2332 1 12233334432211
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
++++.++.|...++ ---.+...+..++. |+..++++. |. +. +.+.+++.++.+..+. +.++ .+
T Consensus 71 ~~~~~viagvg~~~------t~~ai~~a~~a~~~-Gad~v~v~~-P~-y~--~~~~~~l~~~f~~va~---a~~l---Pv 133 (293)
T PRK04147 71 KGKVKLIAQVGSVN------TAEAQELAKYATEL-GYDAISAVT-PF-YY--PFSFEEICDYYREIID---SADN---PM 133 (293)
T ss_pred CCCCCEEecCCCCC------HHHHHHHHHHHHHc-CCCEEEEeC-Cc-CC--CCCHHHHHHHHHHHHH---hCCC---CE
Confidence 34567888886542 11223356667775 777666544 22 11 1455666544433322 3444 36
Q ss_pred EEEeCcccccccc-HHHHHHHHhhcC
Q 019674 163 FIFSDFDYVGGAF-YKNMVKVAKCVT 187 (337)
Q Consensus 163 ~I~~~s~~~~~~~-~~~~~~i~r~~t 187 (337)
++|++....+..+ ...+.+++++.+
T Consensus 134 ~iYn~P~~tg~~l~~~~l~~L~~~pn 159 (293)
T PRK04147 134 IVYNIPALTGVNLSLDQFNELFTLPK 159 (293)
T ss_pred EEEeCchhhccCCCHHHHHHHhcCCC
Confidence 8887643323222 223444665544
No 182
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=27.34 E-value=1e+02 Score=30.17 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=50.5
Q ss_pred ccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhh----CCceeEEEecCCCCCCcchhh
Q 019674 28 IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK----GEKFYLYTGRGPSSEALHLGH 103 (337)
Q Consensus 28 ~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~----~~~~~vytG~~PTg~slHlGh 103 (337)
-+|.++.+++|=.++... + ..+.+|+.|. .+++..++.+.+ +++..+|.| |.+.+|+||
T Consensus 93 ~~~~~fy~klGF~~i~~~-----~-----~~~v~mE~~~----~~~~~y~~~l~~~~~~~~~i~~~~g---~fdP~t~GH 155 (332)
T TIGR00124 93 PEYAALFEYCGFKTLAEA-----K-----DQGVLLENSA----TRLKRYCSTLPKPRTPGNKIGSIVM---NANPFTNGH 155 (332)
T ss_pred chHHHHHHHcCCEEeeee-----c-----ceEEEEeccC----cCHHHHHHHHHHhccCCCcEEEEEe---CcCCCchHH
Confidence 346677777776555432 0 0244565553 345555555532 346677777 446799999
Q ss_pred HHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHH
Q 019674 104 LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAK 150 (337)
Q Consensus 104 ~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~ 150 (337)
+--+.... +.++. ++|.|....+.+ .+.++.-+.+++..+
T Consensus 156 ~~li~~A~---~~~d~-~~v~v~~~~~~~---f~~~~R~~~v~~~~~ 195 (332)
T TIGR00124 156 RYLIEQAA---RQCDW-LHLFVVKEDASL---FSYDERFALVKQGIQ 195 (332)
T ss_pred HHHHHHHH---HHCCE-EEEEEEeCCCCC---CCHHHHHHHHHHHhc
Confidence 76553222 22343 333333211111 566666655544443
No 183
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=26.84 E-value=1.3e+02 Score=29.24 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=52.6
Q ss_pred HHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCC----CCCcchhhHHHHHH
Q 019674 34 IDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPS----SEALHLGHLVPFMF 109 (337)
Q Consensus 34 ~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PT----g~slHlGh~l~~~~ 109 (337)
++.||- .+..++.++|+ +|.+.....++++..++.+.+.+..--...+.++|| .++-+-|-.+.. .
T Consensus 216 ie~fg~------~l~~iQ~l~g~---~f~~~e~~~~~~~V~~iv~~m~~~a~~agqSSwGPtvY~i~d~~~~~~~~~~-~ 285 (312)
T COG1907 216 IESFGE------ALNEIQELGGK---WFKKVEGGLQREDVKEIVDEMVEAAYGAGQSSWGPTVYGIVDSREAGSVVRK-L 285 (312)
T ss_pred HHHHHH------HHHHHHHHHhh---hhhhhhceeccHHHHHHHHHHHHhcccccccccCCEEEEeccccccchHHHH-H
Confidence 556665 68899999888 677888888899999998877653333345556666 223444433333 3
Q ss_pred HHhHHhh-CCceEEEEecCc
Q 019674 110 TKYLQDA-FKVPLVIQLTDD 128 (337)
Q Consensus 110 ~~~lQ~~-~~~~v~I~IaD~ 128 (337)
...|-+. .++.+.+-.++.
T Consensus 286 ~~~~~~~g~~gev~vT~~rN 305 (312)
T COG1907 286 IDILLEEGIGGEVFVTKARN 305 (312)
T ss_pred HHHHHhcCCceEEEEeccCC
Confidence 4444443 356666654543
No 184
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.51 E-value=4.7e+02 Score=25.18 Aligned_cols=104 Identities=18% Similarity=0.332 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHh-hCCceeEEEecCCCCCCcchhhHH-HHHHHHhHHhh-CCceEE
Q 019674 46 LVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE-KGEKFYLYTGRGPSSEALHLGHLV-PFMFTKYLQDA-FKVPLV 122 (337)
Q Consensus 46 ~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~-~~~~~~vytG~~PTg~slHlGh~l-~~~~~~~lQ~~-~~~~v~ 122 (337)
||..+-+ ||++ -+++||.|.+-+|.-...+.+. .|.+-.++|-++-+ .--.+++ -+.-+.++++. .|.||+
T Consensus 122 LL~a~~~-t~kp--V~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~---fgy~~~~~D~~~ip~mk~~~t~lPVi 195 (281)
T PRK12457 122 LVVAIAK-TGKP--VNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS---FGYDNLVVDMLGFRQMKRTTGDLPVI 195 (281)
T ss_pred HHHHHhc-cCCe--EEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC---CCCCCcccchHHHHHHHhhCCCCCEE
Confidence 4444444 4553 4688999988765554444443 36677788888754 1222332 23344567774 489987
Q ss_pred EEecCcccccccCC----CHHHHHHHHHHHHHHHHHcCCC
Q 019674 123 IQLTDDEKCMWKNL----SVEESQRLARENAKDIIACGFD 158 (337)
Q Consensus 123 I~IaD~~a~~~r~~----~~e~i~~~~~~~~~~ilA~G~d 158 (337)
+ |++-..-++. .---.++.+...++.-+|+|.|
T Consensus 196 ~---DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaD 232 (281)
T PRK12457 196 F---DVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLA 232 (281)
T ss_pred E---eCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 6 8875421110 0011234444666777888986
No 185
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=25.08 E-value=1.6e+02 Score=25.49 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=24.6
Q ss_pred CceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcc
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
++..+-.|.= +.+|+||---+..+..+.+.-+.+.+++.=|+|
T Consensus 5 ~~~~v~iG~F---DGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 5 KKSVVAIGNF---DGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp S-EEEEES-----TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred CCcEEEEeCC---CCccHHHHHHHHHHhhhhhhcccceEEEEcccC
Confidence 4555666654 469999987776666666556777777767776
No 186
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=25.07 E-value=2.5e+02 Score=19.64 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=16.3
Q ss_pred CCcchhhHHHHHHHHhHHhhCCceEEEEecC
Q 019674 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (337)
Q Consensus 97 ~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD 127 (337)
+.+|.||.--+...+ +.++ .+++.|+-
T Consensus 9 dp~H~GH~~~l~~a~---~~~~-~~vv~i~~ 35 (66)
T TIGR00125 9 DPFHLGHLDLLERAK---ELFD-ELIVGVGS 35 (66)
T ss_pred CCCCHHHHHHHHHHH---HhCC-EEEEEECc
Confidence 459999976654333 3345 56666654
No 187
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=24.91 E-value=6.8e+02 Score=24.71 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=70.9
Q ss_pred hCCceeEEEecCCCCCCcchhhHH--HHHHHHhHHhhCCceEEEE-----------------ecCcccccccCCCHHHHH
Q 019674 82 KGEKFYLYTGRGPSSEALHLGHLV--PFMFTKYLQDAFKVPLVIQ-----------------LTDDEKCMWKNLSVEESQ 142 (337)
Q Consensus 82 ~~~~~~vytG~~PTg~slHlGh~l--~~~~~~~lQ~~~~~~v~I~-----------------IaD~~a~~~r~~~~e~i~ 142 (337)
.|+..+++.=++|-+ .|==-.. -..-++-|++...-.+.|+ |-||+- +...+.+.=-
T Consensus 48 ~G~DdRLlvViGPCS--iHD~~AAleYA~RL~~l~e~~~d~L~iVMRvYfeKPRTtVGWKGLInDP~l--dgsf~i~~GL 123 (351)
T COG0722 48 HGEDDRLLVVIGPCS--IHDPEAALEYARRLKALREELKDRLEIVMRVYFEKPRTTVGWKGLINDPDL--DGSFDINKGL 123 (351)
T ss_pred cCCCCcEEEEEeCCc--cCCHHHHHHHHHHHHHHHHHhhCceEEEEEEeecCCcccccccccccCCCC--CCCccHHHHH
Confidence 578888999999984 7733221 1223333555544344443 556552 1113444444
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeCccccccccHHHHH-H--HHhhcCHHHHHHhh--------CCCCCccc-cccchhh
Q 019674 143 RLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-K--VAKCVTYNKVVGIF--------GFTGEDHI-GKVSFPP 210 (337)
Q Consensus 143 ~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~-~--i~r~~t~~~~~~~~--------g~~~~~~~-g~~~Yp~ 210 (337)
+.+|+...++-..|+....-++.-.+ .-|+.+++ + |+.+.|=++.-+-+ ||+++.+- -.+..=.
T Consensus 124 ~~aR~Ll~~v~e~Glp~AtE~Ld~is----pqy~aDLiSwgAIGARTtESQ~HRe~ASGLs~PvGFKNgTdGnl~vAidA 199 (351)
T COG0722 124 RIARKLLLDVNELGLPTATEFLDPIS----PQYLADLISWGAIGARTTESQIHRELASGLSCPVGFKNGTDGNLKVAIDA 199 (351)
T ss_pred HHHHHHHHHHHhcCCchhHHHhccCc----HHHHHHHHHHhhccccchhhHHHHHHhhccCCCccccCCCCccHHHHHHH
Confidence 56778888888899964322333222 34555432 3 89999988876643 67655321 2345566
Q ss_pred hhcC
Q 019674 211 VQAV 214 (337)
Q Consensus 211 lQaa 214 (337)
++||
T Consensus 200 i~AA 203 (351)
T COG0722 200 IRAA 203 (351)
T ss_pred HHHh
Confidence 7777
No 188
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=24.78 E-value=2.7e+02 Score=24.33 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCcchhhHHHHHHHHhHHhhCCceEEEEecCcc-cccccC-CCHHHHHHHH
Q 019674 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWKN-LSVEESQRLA 145 (337)
Q Consensus 97 ~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~-a~~~r~-~~~e~i~~~~ 145 (337)
+.+|+||+--+. +..+..+ .++|.|+... .+..++ .+.++-.++.
T Consensus 9 dP~H~GHl~ii~---~a~~~~D-~lii~i~s~~~~~k~~~p~~~~eR~~mi 55 (165)
T TIGR01527 9 QPFHLGHLEVIK---KIAEEVD-ELIIGIGSAQESHTLENPFTAGERILMI 55 (165)
T ss_pred CCCCHHHHHHHH---HHHHHCC-EEEEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 359999975553 3223233 4555444433 433233 6665544333
No 189
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=24.75 E-value=3.9e+02 Score=25.42 Aligned_cols=104 Identities=21% Similarity=0.375 Sum_probs=58.1
Q ss_pred HHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHH-hhCCceeEEEecCCCCCCcchhhH-HHHHHHHhHHhhCCceEE
Q 019674 45 SLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAY-EKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLV 122 (337)
Q Consensus 45 ~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~-~~~~~~~vytG~~PTg~slHlGh~-l~~~~~~~lQ~~~~~~v~ 122 (337)
+||..+-+ ||++ -+++||.+-+.++.-...+.+ ..|.+-.++|-++-| ..-.++ +-+.-+..+++. |.||+
T Consensus 107 ~LL~a~g~-t~kp--V~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t---f~y~r~~~D~~~ip~~k~~-~~PVi 179 (258)
T TIGR01362 107 DLLVAAAK-TGRI--VNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS---FGYNNLVVDMRSLPIMREL-GCPVI 179 (258)
T ss_pred HHHHHHhc-cCCe--EEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC---cCCCCcccchhhhHHHHhc-CCCEE
Confidence 35555544 4554 468999998776655555554 346666788888854 222232 223334445664 88987
Q ss_pred EEecCcccccccC----CCHHHHHHHHHHHHHHHHHcCCC
Q 019674 123 IQLTDDEKCMWKN----LSVEESQRLARENAKDIIACGFD 158 (337)
Q Consensus 123 I~IaD~~a~~~r~----~~~e~i~~~~~~~~~~ilA~G~d 158 (337)
+ |++-..-++ .+-.-.++.+....+.-+|.|.|
T Consensus 180 ~---DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaD 216 (258)
T TIGR01362 180 F---DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGID 216 (258)
T ss_pred E---eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCC
Confidence 6 888542111 00111233444566667788886
No 190
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=24.73 E-value=74 Score=35.49 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=28.0
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
++++++.+|.- ++| .||+||.+... ++.++++.-|..|....|-++
T Consensus 48 ~~~f~i~~~pPyanG-~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~ 97 (912)
T PRK05743 48 KPKFILHDGPPYANG-DIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDC 97 (912)
T ss_pred CCcEEEeCCCCCCCC-CccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCC
Confidence 34577766664 346 79999988652 334466655666655544443
No 191
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=24.36 E-value=5.9e+02 Score=23.79 Aligned_cols=134 Identities=20% Similarity=0.288 Sum_probs=63.8
Q ss_pred cccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCccc----------ccCCHHHHHHHHhh--
Q 019674 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF----------AHRDLNDILDAYEK-- 82 (337)
Q Consensus 15 ~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~----------~~~d~~~ll~~~~~-- 82 (337)
..+|||+-.+ .+||+.+.+ +++.+-+- | . +|++. +..+..++++...+
T Consensus 8 ~~~TPf~~dg--~id~~~~~~----------~i~~l~~~-G--v-----~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~ 67 (289)
T PF00701_consen 8 ALITPFNADG--SIDEDALKR----------LIDFLIEA-G--V-----DGLVVLGSTGEFYSLTDEERKELLEIVVEAA 67 (289)
T ss_dssp EE---BETTS--SB-HHHHHH----------HHHHHHHT-T--S-----SEEEESSTTTTGGGS-HHHHHHHHHHHHHHH
T ss_pred eeeCCCCCCc--CcCHHHHHH----------HHHHHHHc-C--C-----CEEEECCCCcccccCCHHHHHHHHHHHHHHc
Confidence 3589998776 899988765 33333220 1 1 23322 12233344443322
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
+..+.++.|....+ ---.+.+.++.|+. |+..++++. |+=+ ..+.+++.++.+..+ -+.++ ..
T Consensus 68 ~~~~~vi~gv~~~s------t~~~i~~a~~a~~~-Gad~v~v~~-P~~~---~~s~~~l~~y~~~ia---~~~~~---pi 130 (289)
T PF00701_consen 68 AGRVPVIAGVGANS------TEEAIELARHAQDA-GADAVLVIP-PYYF---KPSQEELIDYFRAIA---DATDL---PI 130 (289)
T ss_dssp TTSSEEEEEEESSS------HHHHHHHHHHHHHT-T-SEEEEEE-STSS---SCCHHHHHHHHHHHH---HHSSS---EE
T ss_pred cCceEEEecCcchh------HHHHHHHHHHHhhc-CceEEEEec-cccc---cchhhHHHHHHHHHH---hhcCC---CE
Confidence 34567888888653 11234467778875 777665544 3211 257777775544433 23333 25
Q ss_pred EEEeCccccccccH-HHHHHHHhh
Q 019674 163 FIFSDFDYVGGAFY-KNMVKVAKC 185 (337)
Q Consensus 163 ~I~~~s~~~~~~~~-~~~~~i~r~ 185 (337)
++|++-.+.+..+- ..+.+++++
T Consensus 131 ~iYn~P~~tg~~ls~~~l~~L~~~ 154 (289)
T PF00701_consen 131 IIYNNPARTGNDLSPETLARLAKI 154 (289)
T ss_dssp EEEEBHHHHSSTSHHHHHHHHHTS
T ss_pred EEEECCCccccCCCHHHHHHHhcC
Confidence 67766433332222 234446554
No 192
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=24.04 E-value=3.4e+02 Score=25.83 Aligned_cols=104 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHh-hCCceeEEEecCCCCCCcchhhH-HHHHHHHhHHhhCCceEE
Q 019674 45 SLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE-KGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLV 122 (337)
Q Consensus 45 ~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~-~~~~~~vytG~~PTg~slHlGh~-l~~~~~~~lQ~~~~~~v~ 122 (337)
+||+.+-+ ||++ -+++||.+-+.+|.-...+.+. .|.+-.++|-++-| ..-.++ +-+.-+..+++ .+.||+
T Consensus 115 ~LL~a~g~-t~kp--V~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t---f~y~r~~~D~~~vp~~k~-~~lPVi 187 (264)
T PRK05198 115 DLLVAAAK-TGKV--VNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS---FGYNNLVVDMRGLPIMRE-TGAPVI 187 (264)
T ss_pred HHHHHHhc-cCCe--EEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC---cCCCCeeechhhhHHHhh-CCCCEE
Confidence 35555554 4554 4689999988776665555543 46667788888854 222233 22333445666 478887
Q ss_pred EEecCcccccccC----CCHHHHHHHHHHHHHHHHHcCCC
Q 019674 123 IQLTDDEKCMWKN----LSVEESQRLARENAKDIIACGFD 158 (337)
Q Consensus 123 I~IaD~~a~~~r~----~~~e~i~~~~~~~~~~ilA~G~d 158 (337)
+ |++-..-++ ..-.--++.+...++.-+|+|.|
T Consensus 188 ~---DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~Gad 224 (264)
T PRK05198 188 F---DATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVA 224 (264)
T ss_pred E---eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 5 887542111 00011233444666777888986
No 193
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=23.89 E-value=2.2e+02 Score=22.99 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCcchhhHHHHHHHHhHHhhCCc-eEEEEecCcccccc-cC-CCHHHHHHHHH
Q 019674 97 EALHLGHLVPFMFTKYLQDAFKV-PLVIQLTDDEKCMW-KN-LSVEESQRLAR 146 (337)
Q Consensus 97 ~slHlGh~l~~~~~~~lQ~~~~~-~v~I~IaD~~a~~~-r~-~~~e~i~~~~~ 146 (337)
+.+|.||+--+..+. +.++. .++++.+|-+.... +. .+.++-.++.+
T Consensus 7 dP~H~GH~~~l~~a~---~~~~~~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~ 56 (157)
T PF01467_consen 7 DPPHNGHLNLLREAR---ELFDEDLVIVVPSDNSPHKDKKPIFSFEERLEMLR 56 (157)
T ss_dssp TT--HHHHHHHHHHH---HHSSESEEEEEEEEHHCHSTTSSSSTHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH---HhccccccccccccccccccccccCcHHHHHHHHH
Confidence 459999986554332 23343 35555566654432 22 66666654443
No 194
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=23.86 E-value=2.5e+02 Score=27.58 Aligned_cols=19 Identities=16% Similarity=0.567 Sum_probs=16.9
Q ss_pred cCcccccCCHHHHHHHHhh
Q 019674 64 RGVFFAHRDLNDILDAYEK 82 (337)
Q Consensus 64 Rgi~~~~~d~~~ll~~~~~ 82 (337)
.|++|+..+..++.+.+++
T Consensus 93 vgliFTn~~p~ev~~~l~~ 111 (323)
T PTZ00240 93 TGLIFTNNEVQEITSVLDS 111 (323)
T ss_pred EEEEEeCCCHHHHHHHHHH
Confidence 7999999999999988765
No 195
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.75 E-value=75 Score=35.22 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCCCcchhhHHHHH----HHHhHHhhCCceEEEEecCccc
Q 019674 95 SSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEK 130 (337)
Q Consensus 95 Tg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~IaD~~a 130 (337)
|| +|||||.+.+- +++| ++..|-++--.-|-+||
T Consensus 87 TG-~LHiGHALt~aiqD~i~R~-~rm~G~~vlw~PG~DHA 124 (995)
T KOG0432|consen 87 TG-SLHIGHALTVAIQDALARY-NRMHGYQVLWVPGTDHA 124 (995)
T ss_pred cc-ccchhHHHHHHHHHHHHHH-HHhcCCeeeecCCcccc
Confidence 56 89999988762 4444 44447666666677775
No 196
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=23.16 E-value=1.3e+02 Score=28.65 Aligned_cols=54 Identities=7% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhh
Q 019674 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 302 (337)
Q Consensus 242 d~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k 302 (337)
.|...+-+.+++.++++ ...+..+.+..-+| ..||+- ..+|+....+....|-+
T Consensus 152 ~gq~~~Lk~~~~dl~~~-v~ii~~~~vr~~dG--laiSSR----N~~Ls~~~r~~A~~l~~ 205 (277)
T cd00560 152 AQQLAVIRRMVRDLNLP-VEIVGCPTVREEDG--LALSSR----NVYLSAEERKEALALYR 205 (277)
T ss_pred cccHHHHHHHHHHcCCe-EEEEcCCceecCCC--ceEeCC----CCCCCHHHHHHHHHHHH
Confidence 66677788888888873 22222344433444 789876 24566665555555544
No 197
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=22.82 E-value=1.1e+02 Score=26.86 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCcchhhHHHHHHHHhHHhhCCceEEEEecCccc
Q 019674 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (337)
Q Consensus 97 ~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a 130 (337)
+.+|+||.--+..++.+.+..+...+++.-|+|.
T Consensus 9 DgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p 42 (180)
T cd02064 9 DGVHLGHQALIKTLKKIARERGLPSAVLTFDPHP 42 (180)
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCH
Confidence 3599999887766666655445566666667763
No 198
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=22.80 E-value=70 Score=35.82 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEE
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I 123 (337)
++++++.+|.= ||| .||+||..... +..++|+.-|..|..
T Consensus 24 ~~kf~i~~ppPy~nG-~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 24 REKFFLTMAYPYLNG-VMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred CCceEEecCCCCCCC-CcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 35676666664 346 79999988653 445567665665544
No 199
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=22.33 E-value=2.4e+02 Score=24.32 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=27.2
Q ss_pred EEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccc-ccc-CCCHHHHHHHHH
Q 019674 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC-MWK-NLSVEESQRLAR 146 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~-~~r-~~~~e~i~~~~~ 146 (337)
+|.|.= +.+|+||+..+..+ ++. .+ .++|+++-.... ..+ ..+.++-.++.+
T Consensus 3 l~~G~F---~P~H~GHl~li~~a--~~~-~d-~v~vi~~~~~~~~~~~~~~~~~~R~~mi~ 56 (158)
T cd02167 3 IVFGKF---APLHTGHVYLIYKA--LSQ-VD-ELLIIVGSDDTRDDARTGLPLEKRLRWLR 56 (158)
T ss_pred EEeecc---CCCCHHHHHHHHHH--HHH-CC-EEEEEECCCCcccccCCCCCHHHHHHHHH
Confidence 455532 35999998755332 222 33 466666554432 112 267766665444
No 200
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.15 E-value=6.6e+02 Score=23.58 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=68.6
Q ss_pred cccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcc----------cccCCHHHHHHHHhh--
Q 019674 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF----------FAHRDLNDILDAYEK-- 82 (337)
Q Consensus 15 ~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~----------~~~~d~~~ll~~~~~-- 82 (337)
..+|||+-++ .+||+.+.+ +++++-+-.|- .|++ .+..+..++++...+
T Consensus 7 a~~TPf~~dg--~iD~~~~~~----------~i~~l~~~~Gv-------~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~ 67 (288)
T cd00954 7 ALLTPFDENG--EINEDVLRA----------IVDYLIEKQGV-------DGLYVNGSTGEGFLLSVEERKQIAEIVAEAA 67 (288)
T ss_pred ceECCCCCCC--CCCHHHHHH----------HHHHHHhcCCC-------CEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence 3689998877 899987765 34333331011 2332 122233344442221
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHc-CCCCCc
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIAC-GFDVTK 161 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~-G~dp~k 161 (337)
++++.++.|....+ . --.....+..+++ |+..++++. |. +. + .+.+++.++.+..+ -|. +++
T Consensus 68 ~~~~~viagv~~~~--~----~~ai~~a~~a~~~-Gad~v~~~~-P~-y~-~-~~~~~i~~~~~~v~---~a~~~lp--- 130 (288)
T cd00954 68 KGKVTLIAHVGSLN--L----KESQELAKHAEEL-GYDAISAIT-PF-YY-K-FSFEEIKDYYREII---AAAASLP--- 130 (288)
T ss_pred CCCCeEEeccCCCC--H----HHHHHHHHHHHHc-CCCEEEEeC-CC-CC-C-CCHHHHHHHHHHHH---HhcCCCC---
Confidence 34577888887542 1 1123356667776 777666543 32 11 2 46666665443332 244 442
Q ss_pred eEEEeCccccccccHH-HHHHHHhhcC
Q 019674 162 TFIFSDFDYVGGAFYK-NMVKVAKCVT 187 (337)
Q Consensus 162 ~~I~~~s~~~~~~~~~-~~~~i~r~~t 187 (337)
+++|++-...+..+-. .+.+++++.+
T Consensus 131 i~iYn~P~~tg~~l~~~~~~~L~~~pn 157 (288)
T cd00954 131 MIIYHIPALTGVNLTLEQFLELFEIPN 157 (288)
T ss_pred EEEEeCccccCCCCCHHHHHHHhcCCC
Confidence 6777765433322222 3344655433
No 201
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=21.85 E-value=3.5e+02 Score=25.93 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=36.2
Q ss_pred cccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCc--ccccccCCCHHHHHH
Q 019674 66 VFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD--EKCMWKNLSVEESQR 143 (337)
Q Consensus 66 i~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~--~a~~~r~~~~e~i~~ 143 (337)
+++.+.+...+++.+.+- ++.++. ++. ...+- ...+..|..++|+ |.. ...+ ...|.|+|++
T Consensus 237 ilH~CG~~~~~~~~l~~~-g~d~ls-~d~---------~~~l~---~~~~~~g~~~~i~-Gnidp~~ll-~~gt~eeI~~ 300 (340)
T TIGR01463 237 VLHICGFTQPILRDIANN-GCFGFS-VDM---------KPGMD---HAKRVIGGQASLV-GNLSPFSTL-MNGTPEKVKK 300 (340)
T ss_pred EEEECCCchhhHHHHHHh-CCCEEe-ecC---------CCCHH---HHHHHcCCceEEE-ecCChHHHh-cCCCHHHHHH
Confidence 445566777777776652 222322 333 22222 2233345455544 544 3333 2368999998
Q ss_pred HHHHHHH
Q 019674 144 LARENAK 150 (337)
Q Consensus 144 ~~~~~~~ 150 (337)
.+++.+.
T Consensus 301 ~v~~~l~ 307 (340)
T TIGR01463 301 LAKEVLY 307 (340)
T ss_pred HHHHHHH
Confidence 8877664
No 202
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=39 Score=36.78 Aligned_cols=10 Identities=50% Similarity=0.481 Sum_probs=8.9
Q ss_pred CCccCCCCCC
Q 019674 275 TGKMSASDPN 284 (337)
Q Consensus 275 ~~KMSkS~~n 284 (337)
++|||||.+|
T Consensus 708 sEKMSKSTGN 717 (1080)
T KOG0437|consen 708 SEKMSKSTGN 717 (1080)
T ss_pred chhhccccCC
Confidence 4899999988
No 203
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=20.61 E-value=1.2e+02 Score=29.18 Aligned_cols=54 Identities=7% Similarity=0.182 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhh
Q 019674 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 302 (337)
Q Consensus 242 d~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k 302 (337)
-|-+.+.|.+.+-++.+ ..++..+++..-+| =-||+- .+||+.+...+.-.+-+
T Consensus 153 ~QQl~vIr~mV~DL~~~-VeIv~vptVRe~DG--LA~SSR----N~YLs~eeR~~A~~L~~ 206 (285)
T COG0414 153 YQQLAVIRRMVADLNLP-VEIVGVPTVREEDG--LALSSR----NVYLSAEERKAAPALYR 206 (285)
T ss_pred HHHHHHHHHHHHHcCCC-eEEEecceeEcCCc--cchhhc----cccCCHHHHHHHHHHHH
Confidence 67777788899999873 33445888888887 355544 47888776655555544
No 204
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=20.41 E-value=2.7e+02 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=41.1
Q ss_pred CCceeEE-EecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHH-cCCCC
Q 019674 83 GEKFYLY-TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIA-CGFDV 159 (337)
Q Consensus 83 ~~~~~vy-tG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r-~~~~e~i~~~~~~~~~~ilA-~G~dp 159 (337)
+.|+.|| +|++|- + ++ ---++-+..|+|. ++++|+----.- .+.-++.++.+.+.|+..++ +||+.
T Consensus 288 KPPL~VYFSGyR~a-E--------GF-Egy~MMk~Lg~Pf-LL~~DpRleGGaFYlGs~eyE~~I~~~I~~~L~~LgF~~ 356 (511)
T TIGR03712 288 KPPLNVYFSGYRPA-E--------GF-EGYFMMKRLGAPF-LLIGDPRLEGGAFYLGSDEYEQGIINVIQEKLDYLGFDH 356 (511)
T ss_pred CCCeEEeeccCccc-C--------cc-hhHHHHHhcCCCe-EEeeccccccceeeeCcHHHHHHHHHHHHHHHHHhCCCH
Confidence 4566665 788884 3 12 1123334468986 567998621100 15556667766677766554 79986
Q ss_pred CceEE
Q 019674 160 TKTFI 164 (337)
Q Consensus 160 ~k~~I 164 (337)
+..++
T Consensus 357 ~qLIL 361 (511)
T TIGR03712 357 DQLIL 361 (511)
T ss_pred HHeee
Confidence 55444
Done!