Query 019674
Match_columns 337
No_of_seqs 257 out of 1531
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 6.6E-92 2.3E-96 692.4 24.0 321 10-334 20-347 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 8.2E-92 2.8E-96 690.1 19.6 318 16-334 3-324 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 4.2E-91 1.4E-95 685.5 22.1 318 13-334 8-327 (395)
4 3hzr_A Tryptophanyl-tRNA synth 100.0 6.8E-88 2.3E-92 660.5 26.2 316 14-334 11-327 (386)
5 3jxe_A Tryptophanyl-tRNA synth 100.0 2.8E-87 9.7E-92 657.3 25.9 307 13-334 3-311 (392)
6 2ip1_A Tryptophanyl-tRNA synth 100.0 4.5E-86 1.5E-90 656.8 24.2 326 9-334 19-353 (432)
7 1r6t_A Tryptophanyl-tRNA synth 100.0 4.6E-86 1.6E-90 663.8 24.3 325 10-334 78-407 (477)
8 1r6u_A Tryptophanyl-tRNA synth 100.0 2.8E-86 9.6E-91 657.8 20.9 325 10-334 31-360 (437)
9 3foc_A Tryptophanyl-tRNA synth 100.0 3.1E-84 1.1E-88 643.2 22.5 309 26-334 32-391 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 1.1E-82 3.8E-87 622.6 21.5 305 13-333 2-312 (372)
11 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.4E-56 4.9E-61 438.7 16.3 251 59-334 7-297 (375)
12 3prh_A Tryptophanyl-tRNA synth 100.0 4.3E-56 1.5E-60 435.2 17.5 250 64-333 9-282 (388)
13 2cya_A Tyrosyl-tRNA synthetase 100.0 7.4E-56 2.5E-60 432.2 17.7 235 60-309 11-269 (364)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 7.3E-55 2.5E-59 422.9 18.3 233 60-309 16-263 (348)
15 2yxn_A Tyrosyl-tRNA synthetase 100.0 5.5E-55 1.9E-59 419.8 13.4 232 59-304 8-263 (322)
16 3vgj_A Tyrosyl-tRNA synthetase 100.0 5.7E-54 2E-58 419.6 19.2 244 59-324 31-286 (373)
17 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.9E-52 6.4E-57 402.5 22.5 233 59-309 7-244 (323)
18 2jan_A Tyrosyl-tRNA synthetase 100.0 3.9E-53 1.4E-57 419.6 16.3 229 59-302 7-259 (432)
19 1n3l_A Tyrosyl-tRNA synthetase 100.0 4.7E-53 1.6E-57 413.6 16.6 232 59-310 11-254 (372)
20 3n9i_A Tryptophanyl-tRNA synth 100.0 3.7E-53 1.3E-57 409.4 15.1 230 85-333 15-265 (346)
21 3sz3_A Tryptophanyl-tRNA synth 100.0 1.6E-53 5.5E-58 411.7 12.4 229 86-333 7-259 (341)
22 3tzl_A Tryptophanyl-tRNA synth 100.0 4.8E-53 1.6E-57 406.1 15.2 223 85-333 3-242 (322)
23 2g36_A Tryptophanyl-tRNA synth 100.0 1.1E-52 3.6E-57 406.4 13.5 229 84-334 11-258 (340)
24 2el7_A Tryptophanyl-tRNA synth 100.0 6.7E-52 2.3E-56 400.5 17.5 227 87-334 3-248 (337)
25 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.4E-51 4.9E-56 429.1 20.6 259 61-334 17-291 (690)
26 2pid_A Tyrosyl-tRNA synthetase 100.0 2.4E-52 8.1E-57 406.1 13.6 229 58-302 12-281 (356)
27 2yy5_A Tryptophanyl-tRNA synth 100.0 5.3E-52 1.8E-56 402.7 15.2 229 84-333 3-258 (348)
28 2zp1_A Tyrosyl-tRNA synthetase 100.0 4.4E-51 1.5E-55 391.5 21.0 239 60-334 5-249 (314)
29 1h3f_A Tyrosyl-tRNA synthetase 100.0 1E-51 3.6E-56 410.1 17.2 230 58-306 11-259 (432)
30 2ts1_A Tyrosyl-tRNA synthetase 100.0 8.6E-52 2.9E-56 409.1 16.0 231 59-302 5-257 (419)
31 1i6k_A TRPRS, tryptophanyl-tRN 100.0 9E-52 3.1E-56 398.3 14.9 227 86-334 2-249 (328)
32 1yi8_B Tryptophanyl-tRNA synth 100.0 1.6E-51 5.6E-56 399.7 16.4 229 83-334 20-268 (351)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1E-50 3.4E-55 402.2 20.1 230 59-302 7-258 (420)
34 2dlc_X Tyrosyl-tRNA synthetase 100.0 7.6E-51 2.6E-55 400.7 18.8 236 60-311 14-260 (394)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 1.4E-49 4.8E-54 390.7 17.8 231 59-302 38-320 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.3E-44 4.4E-49 376.8 14.3 228 83-328 380-633 (690)
37 1nzj_A Hypothetical protein YA 98.6 8.8E-07 3E-11 83.8 15.6 187 93-300 13-251 (298)
38 1j09_A Glutamyl-tRNA synthetas 98.5 5.7E-07 2E-11 90.0 13.2 192 93-306 9-276 (468)
39 2cfo_A Glutamyl-tRNA synthetas 98.5 1.5E-06 5.2E-11 87.4 15.7 193 93-306 9-280 (492)
40 2ja2_A Glutamyl-tRNA synthetas 98.3 3.6E-06 1.2E-10 84.8 12.5 188 93-302 14-286 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.3 2.6E-06 9E-11 85.6 9.9 191 93-306 33-288 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.2 4.2E-06 1.4E-10 86.0 10.7 192 92-306 136-392 (592)
43 2o5r_A Glutamyl-tRNA synthetas 97.6 0.00018 6.3E-09 72.1 9.8 64 235-302 222-291 (481)
44 1irx_A Lysyl-tRNA synthetase; 97.5 0.00034 1.1E-08 70.8 10.0 65 236-302 235-308 (523)
45 3aii_A Glutamyl-tRNA synthetas 97.4 0.00076 2.6E-08 68.5 11.0 73 88-171 97-172 (553)
46 4gri_A Glutamate--tRNA ligase; 97.3 0.0021 7E-08 64.9 12.9 50 233-284 231-280 (512)
47 4g6z_A Glutamate-tRNA ligase; 97.3 0.0025 8.5E-08 64.0 13.1 73 89-171 27-102 (490)
48 3tqo_A Cysteinyl-tRNA syntheta 96.4 0.018 6.1E-07 57.4 11.3 75 85-161 25-112 (462)
49 1qtq_A GLNRS, protein (glutami 94.6 0.14 4.9E-06 51.9 10.1 84 78-171 17-103 (553)
50 3fnr_A Arginyl-tRNA synthetase 93.3 0.024 8.3E-07 56.4 1.5 56 236-292 241-299 (464)
51 2hz7_A Glutaminyl-tRNA synthet 93.1 0.46 1.6E-05 50.5 10.8 84 78-171 57-143 (851)
52 3u1f_A Methionyl-tRNA syntheta 92.8 0.2 7E-06 50.2 7.4 79 81-160 6-96 (542)
53 2csx_A Methionyl-tRNA syntheta 90.8 0.12 4E-06 51.5 3.0 74 87-161 7-93 (497)
54 2d5b_A Methionyl-tRNA syntheta 90.1 0.15 5.1E-06 50.6 3.1 55 234-291 254-310 (500)
55 1iq0_A Arginyl-tRNA synthetase 89.3 0.096 3.3E-06 53.6 1.0 56 236-295 352-411 (592)
56 2zue_A Arginyl-tRNA synthetase 88.9 0.24 8.1E-06 51.1 3.6 59 236-298 382-446 (629)
57 3kfl_A Methionyl-tRNA syntheta 88.9 0.12 4.2E-06 52.4 1.4 77 83-160 25-113 (564)
58 1ile_A Ilers, isoleucyl-tRNA s 87.1 0.31 1.1E-05 51.7 3.2 54 235-291 548-604 (821)
59 4dlp_A Aminoacyl-tRNA syntheta 86.2 0.22 7.6E-06 50.0 1.5 75 84-160 25-112 (536)
60 3h99_A Methionyl-tRNA syntheta 85.6 2.1 7.2E-05 43.1 8.4 77 84-161 18-106 (560)
61 1rqg_A Methionyl-tRNA syntheta 85.5 1.7 5.7E-05 45.4 7.7 77 84-161 2-91 (722)
62 3u1f_A Methionyl-tRNA syntheta 85.3 0.27 9.3E-06 49.3 1.6 50 235-290 282-335 (542)
63 2csx_A Methionyl-tRNA syntheta 85.2 1.8 6.2E-05 42.8 7.5 53 235-291 254-308 (497)
64 3h99_A Methionyl-tRNA syntheta 84.9 0.32 1.1E-05 49.2 1.9 50 236-291 305-358 (560)
65 1ffy_A Isoleucyl-tRNA syntheta 83.9 0.59 2E-05 50.2 3.5 53 235-291 552-608 (917)
66 2x1l_A Methionyl-tRNA syntheta 83.9 0.26 8.9E-06 49.3 0.7 76 84-160 12-99 (524)
67 2d5b_A Methionyl-tRNA syntheta 81.8 3 0.0001 41.1 7.6 73 87-160 5-90 (500)
68 3sp1_A Cysteinyl-tRNA syntheta 81.6 4.8 0.00016 40.2 8.9 75 86-162 43-140 (501)
69 3c8z_A Cysteinyl-tRNA syntheta 81.0 0.63 2.1E-05 45.3 2.2 71 88-160 43-126 (414)
70 3kfl_A Methionyl-tRNA syntheta 80.6 4 0.00014 41.1 8.1 51 235-291 298-352 (564)
71 4dlp_A Aminoacyl-tRNA syntheta 80.2 4.8 0.00016 40.2 8.4 52 234-291 279-334 (536)
72 1li5_A Cysrs, cysteinyl-tRNA s 80.1 0.69 2.4E-05 45.7 2.2 72 86-159 23-107 (461)
73 1gax_A Valrs, valyl-tRNA synth 78.7 1.1 3.7E-05 47.8 3.3 53 235-291 485-541 (862)
74 3c8z_A Cysteinyl-tRNA syntheta 78.3 4.7 0.00016 39.0 7.5 52 235-290 248-303 (414)
75 2x1l_A Methionyl-tRNA syntheta 78.0 6.2 0.00021 39.1 8.5 53 235-291 269-323 (524)
76 4arc_A Leucine--tRNA ligase; l 77.9 6.3 0.00022 42.1 8.9 78 82-160 51-140 (880)
77 1li5_A Cysrs, cysteinyl-tRNA s 75.2 4.6 0.00016 39.8 6.5 51 236-291 225-279 (461)
78 1wkb_A Leucyl-tRNA synthetase; 71.1 1.8 6.1E-05 45.7 2.5 53 235-291 607-663 (810)
79 1wz2_A Leucyl-tRNA synthetase; 70.7 2.2 7.5E-05 46.1 3.1 53 235-291 607-663 (967)
80 2v0c_A Aminoacyl-tRNA syntheta 67.8 8.6 0.00029 41.0 6.9 77 83-160 32-120 (878)
81 1f7u_A Arginyl-tRNA synthetase 67.1 2 6.8E-05 44.0 1.8 55 236-296 370-425 (607)
82 1gax_A Valrs, valyl-tRNA synth 62.7 10 0.00034 40.4 6.2 47 82-129 32-82 (862)
83 1rqg_A Methionyl-tRNA syntheta 62.2 1.5 5.2E-05 45.7 -0.2 30 258-291 327-357 (722)
84 1ile_A Ilers, isoleucyl-tRNA s 58.6 5.3 0.00018 42.2 3.2 48 82-130 36-88 (821)
85 1iq0_A Arginyl-tRNA synthetase 58.2 7.5 0.00026 39.5 4.2 42 86-128 106-152 (592)
86 3sp1_A Cysteinyl-tRNA syntheta 55.8 3.4 0.00011 41.4 1.0 24 262-289 287-310 (501)
87 1f7u_A Arginyl-tRNA synthetase 55.8 10 0.00034 38.8 4.6 39 89-128 149-192 (607)
88 2v0c_A Aminoacyl-tRNA syntheta 53.8 3.5 0.00012 44.0 0.9 15 276-291 636-650 (878)
89 2zue_A Arginyl-tRNA synthetase 53.2 11 0.00037 38.6 4.4 39 89-128 125-168 (629)
90 3oqi_A YVMC, putative uncharac 52.7 1.1E+02 0.0037 27.8 10.4 93 81-180 27-130 (257)
91 3foc_A Tryptophanyl-tRNA synth 49.4 4.3 0.00015 40.1 0.6 23 223-245 223-247 (451)
92 4arc_A Leucine--tRNA ligase; l 46.6 8.9 0.0003 41.0 2.6 14 277-291 639-652 (880)
93 1ffy_A Isoleucyl-tRNA syntheta 46.6 12 0.00041 40.1 3.6 42 82-124 46-91 (917)
94 3fnr_A Arginyl-tRNA synthetase 45.4 20 0.00068 35.3 4.7 42 88-130 35-81 (464)
95 1qjc_A Phosphopantetheine aden 27.5 1.8E+02 0.0061 23.0 7.2 48 86-142 3-51 (158)
96 1wkb_A Leucyl-tRNA synthetase; 27.3 34 0.0012 35.9 3.2 41 83-124 33-77 (810)
97 3oqv_A ALBC; rossman fold, cyc 24.6 2.1E+02 0.0071 25.7 7.4 102 81-187 27-140 (247)
98 1wz2_A Leucyl-tRNA synthetase; 23.5 44 0.0015 35.9 3.3 39 84-123 34-76 (967)
99 3nv7_A Phosphopantetheine aden 20.9 2.8E+02 0.0094 22.7 7.1 50 86-145 4-55 (157)
100 2ejc_A Pantoate--beta-alanine 20.3 99 0.0034 28.3 4.5 57 242-306 151-207 (280)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.6e-92 Score=692.43 Aligned_cols=321 Identities=46% Similarity=0.897 Sum_probs=286.3
Q ss_pred hhhcCcccccCcccC------CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhC
Q 019674 10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (337)
Q Consensus 10 ~~~~~~~~~p~~~~~------~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~ 83 (337)
.++.+|.||||+|++ ...|||+|||++||+++||+++++||+++||++||+|++||+|++|+|+++++++++++
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 356789999999986 23699999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
+++++|+||+|||++|||||++++++++|||+++|++++|+|||+||+++++++++++++++++++++|+|||+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999997899999999999999999989999999999999987789999999999999999999999999999
Q ss_pred EEeCccccccccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchh
Q 019674 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (337)
Q Consensus 164 I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~ 243 (337)
||+|++|.+ .+|..+.+++|++|++++++++|+++++|+|+|+||+|||||+|+++||+++.. ..|++|||.||+|
T Consensus 180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~---~a~lvpvG~DQ~~ 255 (406)
T 3tze_A 180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKG---AMCLVPAAVDQDP 255 (406)
T ss_dssp EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTT---CEEEEEEEGGGHH
T ss_pred EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccC---CCeEEeeccchHH
Confidence 999999985 889999999999999999999999889999999999999999999999998753 3489999999999
Q ss_pred HHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCcc
Q 019674 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE 323 (337)
Q Consensus 244 ~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~ 323 (337)
|+++|||+|+|+|+++|+++++++||+|+|+++|||||.++|+|||+|+|++|++|||+||||+++.|++++++.||||+
T Consensus 256 ~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~ 335 (406)
T 3tze_A 256 FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDID 335 (406)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGG
T ss_pred HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCc
Confidence 99999999999999999999999999999976799999988899999999999999999999999999999999999999
Q ss_pred c-hHHHHHHHHh
Q 019674 324 V-LEVLFLQIFT 334 (337)
Q Consensus 324 ~-~~~~~l~~f~ 334 (337)
+ ++|+|+++|.
T Consensus 336 v~~l~~~~~~~~ 347 (406)
T 3tze_A 336 VDVPFEYLKYFL 347 (406)
T ss_dssp GCHHHHHHHHHC
T ss_pred ccHHHHHHHHHc
Confidence 9 9999999984
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=8.2e-92 Score=690.13 Aligned_cols=318 Identities=57% Similarity=1.039 Sum_probs=277.5
Q ss_pred ccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEecC
Q 019674 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (337)
Q Consensus 16 ~~~p~~~~~--~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~ 93 (337)
-||||+|++ ...+||+|||++||+++||+++++||+++||++||+|++||+|++|+|++++++++++|+++++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 589999986 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc
Q 019674 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (337)
Q Consensus 94 PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~ 172 (337)
|||++|||||++++++++|||+++|++++|+|||+||+++|+ ++++++++++++++++|+|+|+||++++||+|++|.+
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 162 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA 162 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH
Confidence 998799999999999999999999999999999999988885 9999999999999999999999999999999999984
Q ss_pred cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHh
Q 019674 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (337)
Q Consensus 173 ~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla 252 (337)
.+|.++++++|++|+++|++++|+++++|+|+|+||+|||||+|+.+||+++..++|++|+||||.||+||+++|||+|
T Consensus 163 -~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla 241 (393)
T 3hv0_A 163 -ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVA 241 (393)
T ss_dssp -HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHT
T ss_pred -HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHH
Confidence 6799999999999999999999998899999999999999999999999998878888899999999999999999999
Q ss_pred hhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHH
Q 019674 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQ 331 (337)
Q Consensus 253 ~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~ 331 (337)
+|+|+++|+++++++||+|+|+++|||||.+||+|||+|+|++|++|||++|||+|+.|++++++.||||++ ++|+|+.
T Consensus 242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~ 321 (393)
T 3hv0_A 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLR 321 (393)
T ss_dssp GGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHH
T ss_pred HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHH
Confidence 999999999999999999999778999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHh
Q 019674 332 IFT 334 (337)
Q Consensus 332 ~f~ 334 (337)
+|+
T Consensus 322 ~~~ 324 (393)
T 3hv0_A 322 FLM 324 (393)
T ss_dssp HHC
T ss_pred HHc
Confidence 884
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=4.2e-91 Score=685.47 Aligned_cols=318 Identities=55% Similarity=1.028 Sum_probs=260.5
Q ss_pred cCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEec
Q 019674 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (337)
Q Consensus 13 ~~~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~ 92 (337)
-+.+||||+|++ .+||+|||++||+++||+++++||+++||++||+|++||+|++|+|++++++++++|+++++|+||
T Consensus 8 ~~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~ 85 (395)
T 3i05_A 8 HEAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR 85 (395)
T ss_dssp ----------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE
T ss_pred ccceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEee
Confidence 467899999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~ 172 (337)
+|||++|||||++++++++|||+++|++++|+|||+|++++++++++++++++++++++|+|||+||++++||+|++|.+
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred cCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 99998899999999999999999999999999999999888889999999999999999999999999999999999986
Q ss_pred cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCC-CCcccccccccCchhHHHHHHHH
Q 019674 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDV 251 (337)
Q Consensus 173 ~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~-~d~~c~vp~G~DQd~~~~l~rdl 251 (337)
.||.++++++|++|++++++++|+++++|+|+|+||+|||||+|+++||||+.++ .++.|++|||.||+||+++|||+
T Consensus 166 -~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdl 244 (395)
T 3i05_A 166 -CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDI 244 (395)
T ss_dssp -TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHT
T ss_pred -HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHH
Confidence 8999999999999999999999998899999999999999999999999999887 45679999999999999999999
Q ss_pred hhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHH
Q 019674 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFL 330 (337)
Q Consensus 252 a~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l 330 (337)
|+|+|+++|+++++++||+|+|+++||||| ++|+|||+|+|++|++|||++||||++.|.+++++.||||++ ++|+|+
T Consensus 245 a~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~ 323 (395)
T 3i05_A 245 APRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWL 323 (395)
T ss_dssp HHHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHH
T ss_pred HHHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHH
Confidence 999999999999999999999987899999 677999999999999999999999999999999999999999 999999
Q ss_pred HHHh
Q 019674 331 QIFT 334 (337)
Q Consensus 331 ~~f~ 334 (337)
.+|+
T Consensus 324 ~~~~ 327 (395)
T 3i05_A 324 SFFL 327 (395)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 9984
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=6.8e-88 Score=660.53 Aligned_cols=316 Identities=31% Similarity=0.637 Sum_probs=300.4
Q ss_pred CcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEecC
Q 019674 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (337)
Q Consensus 14 ~~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~ 93 (337)
..-++||.....+.+||+|||++||+++||+++|+||+++||++||+|++||+|++|+|++.+++++++|+++++|+||+
T Consensus 11 ~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~ 90 (386)
T 3hzr_A 11 QTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKY 90 (386)
T ss_dssp --CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccC
Confidence 34589998776778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccccc
Q 019674 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173 (337)
Q Consensus 94 PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~ 173 (337)
|||+ |||||++++++++|||+++|++++|+|||+||++.|+++++++++++++++++|+|||+||++++||.||+|++
T Consensus 91 PTG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~- 168 (386)
T 3hzr_A 91 PQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG- 168 (386)
T ss_dssp CCSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-
T ss_pred CCCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-
Confidence 9996 99999999999999999889999999999999998889999999999999999999999999999999999986
Q ss_pred ccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhh
Q 019674 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 253 (337)
Q Consensus 174 ~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~ 253 (337)
.+|..+.+++|++|++++++++|+++++|+|+|+||+|||||+|+.+|||++..+ ++|+||||.||+||+++|||+|+
T Consensus 169 ~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~ 246 (386)
T 3hzr_A 169 KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIAT 246 (386)
T ss_dssp HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHH
Confidence 7889999999999999999999988899999999999999999999999998653 56999999999999999999999
Q ss_pred hhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHH
Q 019674 254 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQI 332 (337)
Q Consensus 254 k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~ 332 (337)
|+|+++|+.+++++||+|+|++ |||||+++|+|||+|+|++|++|||++|||||+.|.+++++.||||++ ++|+|+.+
T Consensus 247 r~n~~~p~~l~~~~l~gLdG~~-KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~ 325 (386)
T 3hzr_A 247 TLNFIQPTVLFHKMVPLLSGVT-KFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNI 325 (386)
T ss_dssp HHTCCCCEEEEECCCCCTTCTT-CCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHH
T ss_pred HcCCCCceEeecCeeeCCCCCC-ccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHH
Confidence 9999999999999999999964 999998888999999999999999999999999999999999999999 99999999
Q ss_pred Hh
Q 019674 333 FT 334 (337)
Q Consensus 333 f~ 334 (337)
|+
T Consensus 326 ~~ 327 (386)
T 3hzr_A 326 FS 327 (386)
T ss_dssp HC
T ss_pred Hc
Confidence 85
No 5
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-87 Score=657.32 Aligned_cols=307 Identities=45% Similarity=0.834 Sum_probs=273.4
Q ss_pred cCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEec
Q 019674 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (337)
Q Consensus 13 ~~~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~ 92 (337)
+++.||||+|++ .+||+|||++||+++||+++++||+++||++||+|++||+|++|+|++++++++++|+++++|+|+
T Consensus 3 ~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~ 80 (392)
T 3jxe_A 3 EEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGR 80 (392)
T ss_dssp CCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEecc
Confidence 579999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
+||| +|||||++++++++|||+.+|++++++|||+||+++++ .+++++++++++++++|+|||+||++++||.||+|+
T Consensus 81 ~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 81 GPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST
T ss_pred CCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH
Confidence 9998 79999999999999999966999999999999999876 999999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHH
Q 019674 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (337)
Q Consensus 172 ~~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdl 251 (337)
+ ++..++.+++++|+++|++++++++++|+|+|+||+||||| ++.++ ..|+||||.||+||+++|||+
T Consensus 160 ~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD--------il~~~--~a~~vpvG~DQ~~hl~l~Rdl 227 (392)
T 3jxe_A 160 K--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAP--------TFFER--KRCLIPAAIDQDPYWRLQRDF 227 (392)
T ss_dssp H--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGG--------GGSSS--SCEEEEEEGGGHHHHHHHHHH
T ss_pred H--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHhh--------HHhhc--CCceeecccchHHHHHHHHHH
Confidence 5 88889999999999999999999899999999999999995 67673 248899999999999999999
Q ss_pred hhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHH
Q 019674 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFL 330 (337)
Q Consensus 252 a~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l 330 (337)
|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++|||+||+|+++.++++++++||||++ ++|+|+
T Consensus 228 a~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l 307 (392)
T 3jxe_A 228 AESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWL 307 (392)
T ss_dssp TGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHH
T ss_pred HHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHH
Confidence 9999999999999999999999878999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHh
Q 019674 331 QIFT 334 (337)
Q Consensus 331 ~~f~ 334 (337)
.+|+
T Consensus 308 ~~~~ 311 (392)
T 3jxe_A 308 EIFF 311 (392)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9985
No 6
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=4.5e-86 Score=656.79 Aligned_cols=326 Identities=55% Similarity=1.017 Sum_probs=279.3
Q ss_pred hhhhcCcccccCcccCC-------CcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHh
Q 019674 9 REEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE 81 (337)
Q Consensus 9 ~~~~~~~~~~p~~~~~~-------~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~ 81 (337)
..++.++.||||+|++. +++||+||+++|||++||+++|+||+++||+++|+|++||+|++|+|+++|+++++
T Consensus 19 ~~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~ 98 (432)
T 2ip1_A 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYE 98 (432)
T ss_dssp ---------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHH
T ss_pred ccccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHh
Confidence 34556799999999872 23999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 019674 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 82 ~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (337)
+++++++|+||+|||++|||||++++++++|||+.+|++++++|||+||++.++ ++++++++++++++++|+|+|+||+
T Consensus 99 ~g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 99 QGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp HTCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred cCCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 989999999999997689999999999999999955999999999999999876 9999999999999999999999999
Q ss_pred ceEEEeCccccccccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccC
Q 019674 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID 240 (337)
Q Consensus 161 k~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~D 240 (337)
+++||.||+|++..++..+++++|+++++++++++++++++|+|+|+||+|||||++..+++..+..+....|+||||.|
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~D 258 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAID 258 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGG
T ss_pred ceEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccC
Confidence 99999999998667888888999999999999999888899999999999999998877776554322234689999999
Q ss_pred chhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCC
Q 019674 241 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGA 320 (337)
Q Consensus 241 Qd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~gg 320 (337)
|+||+++|||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++||||+++++.+++++.||
T Consensus 259 Q~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~ 338 (432)
T 2ip1_A 259 QDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGG 338 (432)
T ss_dssp GHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCC
Confidence 99999999999999999999999999999999987899999998899999999999999999999999999999999999
Q ss_pred Cccc-hHHHHHHHHh
Q 019674 321 NLEV-LEVLFLQIFT 334 (337)
Q Consensus 321 n~~~-~~~~~l~~f~ 334 (337)
||++ ++++||++|.
T Consensus 339 ~pd~~~v~~~l~~f~ 353 (432)
T 2ip1_A 339 NPDVDVAYQYLSFFK 353 (432)
T ss_dssp CTTTCHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHC
Confidence 9999 9999999884
No 7
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=4.6e-86 Score=663.84 Aligned_cols=325 Identities=63% Similarity=1.144 Sum_probs=300.2
Q ss_pred hhhcCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCcee
Q 019674 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (337)
Q Consensus 10 ~~~~~~~~~p~~~~~--~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (337)
.+++++.||||+|++ .+++||+|||++|||++||+++++||+++||+++|+|++||+|++|+|+++++++++++++++
T Consensus 78 ~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 157 (477)
T 1r6t_A 78 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 157 (477)
T ss_dssp ----CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEE
T ss_pred cccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcE
Confidence 445689999999987 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeC
Q 019674 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~ 167 (337)
+|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++++.++++++++|+++++++|+|+|+||++++||+|
T Consensus 158 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~n 237 (477)
T 1r6t_A 158 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237 (477)
T ss_dssp EEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence 99999999769999999999889999995599999999999999976699999999999999999999999999999999
Q ss_pred ccccc--cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHH
Q 019674 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (337)
Q Consensus 168 s~~~~--~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~ 245 (337)
|+|.+ ..++.+++++++++|++++++++++++++|+|+|+||+|||||++..+++..++.+....|+||||.||+||+
T Consensus 238 sd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i 317 (477)
T 1r6t_A 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 317 (477)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHH
Confidence 99985 4799999999999999999999988888999999999999998776666555544555669999999999999
Q ss_pred HHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-
Q 019674 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV- 324 (337)
Q Consensus 246 ~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~- 324 (337)
++|||+|+|+|+++|..+++++||+|+|+++|||||.+||+|||+|+|++|++||++||||+++++.+++++.||||++
T Consensus 318 ~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~ 397 (477)
T 1r6t_A 318 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVD 397 (477)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTC
T ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHH
Confidence 9999999999999999999999999999767999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh
Q 019674 325 LEVLFLQIFT 334 (337)
Q Consensus 325 ~~~~~l~~f~ 334 (337)
++|+||++|.
T Consensus 398 ~v~~~l~~ft 407 (477)
T 1r6t_A 398 VSFMYLTFFL 407 (477)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999999885
No 8
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=2.8e-86 Score=657.77 Aligned_cols=325 Identities=63% Similarity=1.144 Sum_probs=299.3
Q ss_pred hhhcCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCcee
Q 019674 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (337)
Q Consensus 10 ~~~~~~~~~p~~~~~--~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (337)
.++.++.||||+|++ .+++||+|||++|||++||+++++||+++||+++|+|++||+|++|+|+++++++++++++++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 456689999999987 234999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeC
Q 019674 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~ 167 (337)
+|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++++.++++++++|+++++++|+|+|+||++++||+|
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~n 190 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 99999999768999999999899999995599999999999999986699999999999999999999999999999999
Q ss_pred ccccc--cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHH
Q 019674 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (337)
Q Consensus 168 s~~~~--~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~ 245 (337)
|+|++ .+++.++++++|+++++++++++++++++|+|+|+||+|||||++..+++..++.+....|+||||.||+||+
T Consensus 191 Sd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i 270 (437)
T 1r6u_A 191 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 270 (437)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHH
Confidence 99985 3799999999999999999999988889999999999999998765555544443455669999999999999
Q ss_pred HHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-
Q 019674 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV- 324 (337)
Q Consensus 246 ~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~- 324 (337)
++|||+|+|+|+++|..+++++||+|+|+++|||||.+||+|||+|+|++|++||++||||+++++.+++++.||||++
T Consensus 271 ~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~ 350 (437)
T 1r6u_A 271 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVD 350 (437)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTC
T ss_pred HHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHH
Confidence 9999999999999999999999999999767999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh
Q 019674 325 LEVLFLQIFT 334 (337)
Q Consensus 325 ~~~~~l~~f~ 334 (337)
++++||++|.
T Consensus 351 ~v~~~l~~ft 360 (437)
T 1r6u_A 351 VSFMYLTFFL 360 (437)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999999885
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.1e-84 Score=643.20 Aligned_cols=309 Identities=49% Similarity=0.871 Sum_probs=290.2
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHH
Q 019674 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (337)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l 105 (337)
.++||+|||++||+++||+++|+||+++||++||+|++||+|++|+|+++|++++++|+++++|+||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred HHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc-cccHHHHHHHH
Q 019674 106 PFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 183 (337)
Q Consensus 106 ~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~-~~~~~~~~~i~ 183 (337)
++++++|||+++|++++|+|||||++++|+ ++++++++++++++++|+|+|+||++++||+||+|++ ..+|..+.+++
T Consensus 112 ~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~ 191 (451)
T 3foc_A 112 PFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD 191 (451)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH
Confidence 999999999999999999999999999885 9999999999999999999999999999999999987 67888889999
Q ss_pred hhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCc----------------------------------CccccCCC
Q 019674 184 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGKD 229 (337)
Q Consensus 184 r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f----------------------------------~di~~l~~ 229 (337)
|++|+++|++++++++++|+|+|+||+|||||+|+.+| .||+.+++
T Consensus 192 r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 271 (451)
T 3foc_A 192 RMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPV 271 (451)
T ss_dssp HTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHH
T ss_pred hhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhc
Confidence 99999999999999899999999999999999988777 12222322
Q ss_pred --------------CcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHH
Q 019674 230 --------------HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (337)
Q Consensus 230 --------------d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~ 295 (337)
+++|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+|+|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~ 351 (451)
T 3foc_A 272 HVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351 (451)
T ss_dssp HHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHH
T ss_pred ccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHH
Confidence 378999999999999999999999999999999999999999997779999999989999999999
Q ss_pred HHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 296 IKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 296 i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
|++|||++|||+++.+++++++.||||++ ++|+||.+|+
T Consensus 352 I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~ 391 (451)
T 3foc_A 352 IKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFM 391 (451)
T ss_dssp HHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHC
T ss_pred HHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHc
Confidence 99999998899999999999999999999 8999999984
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=1.1e-82 Score=622.58 Aligned_cols=305 Identities=28% Similarity=0.463 Sum_probs=275.6
Q ss_pred cCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhhCCceeEEEec
Q 019674 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (337)
Q Consensus 13 ~~~~~~p~~~~~~~~~dy~kl~~~fg~~~i~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~ 92 (337)
.+|+||||+|++ .+||+|||++||+++||+. | |++++||++||+|+|||+||+|||++.||+++++|+|++||||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~-l-~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~ 77 (372)
T 3a04_A 2 AAERLDPWGAVE--IKDYDRLLRTFGIRPFSEV-L-PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGF 77 (372)
T ss_dssp ----CCSSCSTT--TTTTHHHHHTTTCEEGGGG-H-HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCCCCCC--CcCHHHHHHHhCCCCcchH-H-HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCc
Confidence 467899999998 8999999999999999975 4 78889999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
+||| .||||||+++++.+|+|+. |+.++++|||+||++.+. .+.+.++.++++++++|+|||+||+|++||.||++.
T Consensus 78 ~PTG-~lHLGhyv~~~~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~ 155 (372)
T 3a04_A 78 MPSG-KFHFGHKLTVDQLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG 155 (372)
T ss_dssp CCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC
T ss_pred CCCc-HhHHHHHHHHHHHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch
Confidence 9999 5999999999999999997 889999999999999876 456679999999999999999999999999999875
Q ss_pred ccccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHH
Q 019674 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (337)
Q Consensus 172 ~~~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdl 251 (337)
..++..+..+++.++++++.+.++ ..+.|.+.||++||||++..+++..++++ .|+||||.||+||++||||+
T Consensus 156 -~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~---a~~VPVG~DQ~~hleltRdi 228 (372)
T 3a04_A 156 -TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYR---HVVVPVGADQDPHLRLTRDL 228 (372)
T ss_dssp -HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCC---CEEEEEEGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCcc---ceecccchhhHHHHHHHHHH
Confidence 467777888999999999999876 47889999999999987766665544444 48999999999999999999
Q ss_pred hhhhC----CCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hH
Q 019674 252 APRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LE 326 (337)
Q Consensus 252 a~k~~----~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~ 326 (337)
|+|+| .++|+.++++++|||+| .|||||.+||+|+|+|+|++|++|||+ ||||++.|++++++.||||++ ++
T Consensus 229 A~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i 305 (372)
T 3a04_A 229 ADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSV 305 (372)
T ss_dssp HHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHH
T ss_pred HHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhH
Confidence 99998 57899999999999998 799999999999999999999999999 999999999999999999999 88
Q ss_pred HHHHHHH
Q 019674 327 VLFLQIF 333 (337)
Q Consensus 327 ~~~l~~f 333 (337)
|+|+.++
T Consensus 306 ~~~~l~~ 312 (372)
T 3a04_A 306 YHMDLYH 312 (372)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8775554
No 11
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-56 Score=438.65 Aligned_cols=251 Identities=21% Similarity=0.283 Sum_probs=222.0
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhh-HHHHHHHHhHHhhCCceEEEEecCcccccccC--
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh-~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-- 135 (337)
-.|++||++....+.++|++.+++|+++++|+||+||| +||||| +++++.++|||++ |++++++|||+||+++++
T Consensus 7 ~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g 84 (375)
T 2cyc_A 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLG 84 (375)
T ss_dssp HHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGGG
T ss_pred HHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCCC
Confidence 35788998888888899999999988999999999999 899999 7788899999997 889999999999999874
Q ss_pred CCHHHHHHHH-HHHH----HHHHHcCCCCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhh---CCC--CCcccc
Q 019674 136 LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIG 204 (337)
Q Consensus 136 ~~~e~i~~~~-~~~~----~~ilA~G~dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~---g~~--~~~~~g 204 (337)
.+++++++++ ++++ ++|+|||+||+++.||.||+|+++ .+|..+.++++++++++|.++. ++. +++|+|
T Consensus 85 ~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g 164 (375)
T 2cyc_A 85 GDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFA 164 (375)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChH
Confidence 6999999999 8888 899999999999999999999876 4888899999999999999875 432 358999
Q ss_pred ccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCC--------C-CceeeecceecCCCCC-
Q 019674 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--------H-KPALIESSFFPALQGE- 274 (337)
Q Consensus 205 ~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~--------~-~p~~l~~~~lp~L~G~- 274 (337)
+|+||+|||| ||+.++++ ++|||.||+||+++|||+|+|+|+ . +|.++++++||+|+|+
T Consensus 165 ~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~ 233 (375)
T 2cyc_A 165 KLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPP 233 (375)
T ss_dssp HHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCS
T ss_pred HHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcc
Confidence 9999999999 57888875 589999999999999999999998 4 7888999999999996
Q ss_pred ---------------CCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 275 ---------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 275 ---------------~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
++|||||.++++|||+|+|++|++||++ |||+++ +++. .++.|+++|.
T Consensus 234 ~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~-----------~~~~~~v~~~~~~~~ 297 (375)
T 2cyc_A 234 KWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR-----------EVRYNPVLDWVEYII 297 (375)
T ss_dssp SSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT-----------CCSSCHHHHHHHHTT
T ss_pred cccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC-----------CCCCChHHHHHHHHh
Confidence 4899999987899999999999999999 999763 4444 5556666653
No 12
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=4.3e-56 Score=435.19 Aligned_cols=250 Identities=20% Similarity=0.242 Sum_probs=189.9
Q ss_pred cCcccccCCHHHHHHHHhhC-Ccee----EEEecCCCCCCcchhhHHHHHH-HHhHHhhCCceEEEEecCcccccccCCC
Q 019674 64 RGVFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLS 137 (337)
Q Consensus 64 Rgi~~~~~d~~~ll~~~~~~-~~~~----vytG~~PTg~slHlGh~l~~~~-~~~lQ~~~~~~v~I~IaD~~a~~~r~~~ 137 (337)
.-|-.+|||++.+++.+++| +|++ +|+|++|||. ||||||++++. ..+||+ ++.++++|||+||++. +.+
T Consensus 9 ~~~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG~-lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~ 84 (388)
T 3prh_A 9 KPIPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSGS-VTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQD 84 (388)
T ss_dssp --------------------------CCEEEEEECCCSC-CBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCC
T ss_pred CCCCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCCc-chHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCC
Confidence 34557999999999999999 8998 9999999995 99999999864 567997 6788999999999997 689
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccccccHHHHHHHHhhcCHHHHHHhhCCC------CCccccccchhhh
Q 019674 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPV 211 (337)
Q Consensus 138 ~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~~------~~~~~g~~~Yp~l 211 (337)
++++++++++++++|+|||+||+|++||.||+|+++ ....+.++..++++++.+...++ +++++|+|+||+|
T Consensus 85 ~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~--~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvL 162 (388)
T 3prh_A 85 RLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAH--AQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPL 162 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHH--HHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChhHeEEEecccccch--HHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHH
Confidence 999999999999999999999999999999999853 23344566777777766654433 5789999999999
Q ss_pred hcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCC------CCceeee---cceecCCCCCCCccCCCC
Q 019674 212 QAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASD 282 (337)
Q Consensus 212 Qaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~------~~p~~l~---~~~lp~L~G~~~KMSkS~ 282 (337)
||| ||+.+++ |+||||.||+||+++|||+|+|+|. ..|..+. +.+||||+|+++|||||.
T Consensus 163 QAA--------DIl~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~ 231 (388)
T 3prh_A 163 MAA--------DILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSD 231 (388)
T ss_dssp HHH--------HHHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTC
T ss_pred HHH--------HHHHhCC---CEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCC
Confidence 999 5788887 4799999999999999999999984 2244333 468899988778999999
Q ss_pred C--CCeEeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHH
Q 019674 283 P--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQIF 333 (337)
Q Consensus 283 ~--nsaI~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f 333 (337)
| +|+|||+|+|++|++|||+ |||++..+++. ..+|||++ ++|+|+.+|
T Consensus 232 ~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~~--~~~~~p~v~~l~~i~~~~ 282 (388)
T 3prh_A 232 PNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKF--DKENKPGVSNLLTIYSIL 282 (388)
T ss_dssp SSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCCC--CTTTCHHHHHHHHHHHHH
T ss_pred CCCCCeeecCCCHHHHHHHHhh-ccCCCCCcccC--CCCCCCCcchHHHHHHhc
Confidence 7 6899999999999999999 99988765544 24899999 899998876
No 13
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=7.4e-56 Score=432.19 Aligned_cols=235 Identities=24% Similarity=0.323 Sum_probs=210.7
Q ss_pred hhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC--CC
Q 019674 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (337)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~ 137 (337)
.|++|| +....+.++|.+.+++|+++++|+||+||| +|||||+++++.++|||++ |+.++++|||+||+++++ .+
T Consensus 11 ~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~~ 87 (364)
T 2cya_A 11 NRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGGD 87 (364)
T ss_dssp HHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGGC
T ss_pred HHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHC-CCCEEEEEeCcchhhCCCCCCC
Confidence 568899 666667788888889889999999999998 6999998899999999997 889999999999999874 89
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhh---CCC---CCccccccchhh
Q 019674 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT---GEDHIGKVSFPP 210 (337)
Q Consensus 138 ~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~---g~~---~~~~~g~~~Yp~ 210 (337)
++++++++++++++|+|+|+||+++.||.||+|+.+ .+|..++++++++|+++|+++. ++. +++++|+|+||+
T Consensus 88 ~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~ 167 (364)
T 2cya_A 88 MDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPL 167 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhHH
Confidence 999999999999999999999999999999999865 5888899999999999999864 332 247899999999
Q ss_pred hhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCC---------------CC
Q 019674 211 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ET 275 (337)
Q Consensus 211 lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G---------------~~ 275 (337)
|||| |++.++++ ++|+|.||+||+++|||+|+|+|+++|..+++++||+|+| ++
T Consensus 168 LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g 236 (364)
T 2cya_A 168 MQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAE 236 (364)
T ss_dssp HHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------------
T ss_pred HHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccccc
Confidence 9999 57888875 5899999999999999999999999999999999999997 57
Q ss_pred CccCCCCCCCeEeccCCHHHHHHHHhhcCcCCCC
Q 019674 276 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 309 (337)
Q Consensus 276 ~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g~ 309 (337)
+|||||+++++|||+|+|++|++||++ |||+++
T Consensus 237 ~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~ 269 (364)
T 2cya_A 237 VKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAK 269 (364)
T ss_dssp CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTT
T ss_pred cccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCC
Confidence 999999877899999999999999999 999875
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=7.3e-55 Score=422.87 Aligned_cols=233 Identities=21% Similarity=0.330 Sum_probs=196.8
Q ss_pred hhhhcCc--ccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhh-HHHHHHHHhHHhhCCceEEEEecCcccccccC-
Q 019674 60 VFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135 (337)
Q Consensus 60 ~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh-~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~- 135 (337)
.+++||+ +++|++++++| ++++++++|+||+||| +||||| +++++.++|||++ |+.++++|||+||++.++
T Consensus 16 ~l~~r~~~e~~~~~~L~~~L---~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~~ 90 (348)
T 2j5b_A 16 TQLLSIAEECETLDRLKQLV---DSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLKM 90 (348)
T ss_dssp HHHHTTCSEESCHHHHHHHH---HHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTGG
T ss_pred HHHHcCcccccCHHHHHHHH---hcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCCC
Confidence 4678996 34555555555 5578999999999997 899999 5788899999997 899999999999999876
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc-cc-ccHHHHHHHHhhcCHHHHHHh---hCCC--CCccccccc
Q 019674 136 -LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG-AFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVS 207 (337)
Q Consensus 136 -~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~-~~-~~~~~~~~i~r~~t~~~~~~~---~g~~--~~~~~g~~~ 207 (337)
.+++++++++++++++|+|+|+||+++.||.||+|. ++ .+|..+.++++++++++|+++ .++. +++|+|+|+
T Consensus 91 ~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~ 170 (348)
T 2j5b_A 91 NGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIF 170 (348)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------CC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHHh
Confidence 699999999999999999999999999999999984 32 788888899999999999874 3432 467999999
Q ss_pred hhhhhcCCCCCCCcCccccC---CCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCC
Q 019674 208 FPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (337)
Q Consensus 208 Yp~lQaad~~~~~f~di~~l---~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~n 284 (337)
||+|||| |++.+ +++ ++|+|.||+||+++|||+|+|+|+..|..+++++||+|+|+.+|||||.+|
T Consensus 171 YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~ 239 (348)
T 2j5b_A 171 YPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQ 239 (348)
T ss_dssp HHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGG
T ss_pred hHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCC
Confidence 9999999 57777 654 689999999999999999999999889999999999998755799999987
Q ss_pred CeEeccCCHHHHHHHHhhcCcCCCC
Q 019674 285 SAIYVTDSAKAIKNKINKYAFSGGQ 309 (337)
Q Consensus 285 saI~L~D~p~~i~~KI~k~A~t~g~ 309 (337)
++|||+|+|++|++|||+ |+|+++
T Consensus 240 ~~I~L~d~p~~i~kKI~k-a~td~~ 263 (348)
T 2j5b_A 240 GAIFMDDTEQEVSEKISR-AYCTDE 263 (348)
T ss_dssp GSCBTTCCHHHHHHHHHH-SCCCSS
T ss_pred CeEeecCCHHHHHHHHhc-ccCCCC
Confidence 799999999999999999 999875
No 15
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=5.5e-55 Score=419.79 Aligned_cols=232 Identities=15% Similarity=0.203 Sum_probs=203.3
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--- 135 (337)
+.|++||++++|+|+++|++.++ ++++++|+||+|||+||||||+++++.++|||++ |+.++++|||+||++.++
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g~ 85 (322)
T 2yxn_A 8 KQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQA-GHKPVALVGGATGLIGDPSFK 85 (322)
T ss_dssp HHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEccceeeecCCCCc
Confidence 67889999999999999999998 5789999999999988999999999999999997 778889999999998644
Q ss_pred ------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEeCccccccccHHHHHH-HHhhcCHHHHHH------hhCC-C
Q 019674 136 ------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVG------IFGF-T 198 (337)
Q Consensus 136 ------~~~e~i~~~~---~~~~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~-i~r~~t~~~~~~------~~g~-~ 198 (337)
++++++++++ ++++++|+|||+||++++||+||+|+.+..+.++++ +++++++++|.+ ++++ .
T Consensus 86 ~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~~ 165 (322)
T 2yxn_A 86 AAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRED 165 (322)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccCC
Confidence 3999999999 788899999999999999999999987666666665 777777776654 4543 3
Q ss_pred CCccccccchhhhhcCCCCCCCcCccccCCCCccccccc-ccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCc
Q 019674 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 277 (337)
Q Consensus 199 ~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~-G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~K 277 (337)
+++|+|+|+||+|||| ||+.+..+++|.||+ |.||+||+++|||+|+|+|..++..++.++||+|+| +|
T Consensus 166 ~~is~g~f~YP~LQaa--------Dil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG--~K 235 (322)
T 2yxn_A 166 QGISFTEFSYNLLQGY--------DFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADG--TK 235 (322)
T ss_dssp CCCCHHHHTHHHHHHH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CB
T ss_pred CCccchhhhHHHHHHH--------HHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCc--cc
Confidence 5789999999999999 577773323466765 999999999999999999998889999999999998 79
Q ss_pred cCCCCCCCeEeccC---CHHHHHHHHhhcC
Q 019674 278 MSASDPNSAIYVTD---SAKAIKNKINKYA 304 (337)
Q Consensus 278 MSkS~~nsaI~L~D---~p~~i~~KI~k~A 304 (337)
||||.+| +|||+| +|+++++||++ +
T Consensus 236 MSKS~~n-~I~L~d~~tsp~~~~~ki~~-~ 263 (322)
T 2yxn_A 236 FGKTEGG-AVWLDPKKTSPYKFYQFWIN-T 263 (322)
T ss_dssp TTEETTE-ECBSSTTTSCHHHHHHHHHT-C
T ss_pred ccCCCCC-eeeccCCCCCHHHHHHHHhC-C
Confidence 9999997 999999 99999999999 5
No 16
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=5.7e-54 Score=419.64 Aligned_cols=244 Identities=16% Similarity=0.229 Sum_probs=208.9
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHH-HHHHHhHHhhCCceEEEEecCcccccccC--
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~-~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-- 135 (337)
-.+++||+.. +.+.++|.+.+++|+++++|+||+||| +|||||.+. .+.+++||++ |+.++++|||+||+++++
T Consensus 31 ~~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~~ 107 (373)
T 3vgj_A 31 LNDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKMS 107 (373)
T ss_dssp HHHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGGG
T ss_pred HHHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCCC
Confidence 3567789864 334455666667788999999999999 799999764 3357889997 899999999999999764
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc-c--cccHHHHHHHHhhcCHHHHHHhh---CCC--CCccccccc
Q 019674 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVS 207 (337)
Q Consensus 136 ~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~-~--~~~~~~~~~i~r~~t~~~~~~~~---g~~--~~~~~g~~~ 207 (337)
.++++++++++++++.|+|+|+||+++.||.||+|+ + ..+|..+.++++++|+++|+++. ++. +++++|+|+
T Consensus 108 ~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~ 187 (373)
T 3vgj_A 108 GDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQIL 187 (373)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHHH
Confidence 789999999999999999999999999999999998 3 36788888999999999999863 332 478999999
Q ss_pred hhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCC-CceeeecceecCCCCCCCccCCCCCCCe
Q 019674 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSA 286 (337)
Q Consensus 208 Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~-~p~~l~~~~lp~L~G~~~KMSkS~~nsa 286 (337)
||+|||| |++.+++| ++|||.||+||+++|||+|+|+|+. +|..+++++||+|+++.+|||||.+||+
T Consensus 188 YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~ 256 (373)
T 3vgj_A 188 YPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSA 256 (373)
T ss_dssp HHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCC
T ss_pred HHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCe
Confidence 9999999 58888886 5899999999999999999999986 7888999999999443469999998889
Q ss_pred EeccCCHHHHHHHHhhcCcCCCCchHHHHhhcCCCccc
Q 019674 287 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 324 (337)
Q Consensus 287 I~L~D~p~~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~ 324 (337)
|||+|+|++|++|||+ |||+++. .++||.+
T Consensus 257 I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~ 286 (373)
T 3vgj_A 257 IFMDDSESDVNRKIKK-AYCPPNV-------IENNPIY 286 (373)
T ss_dssp CBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHH
T ss_pred eecCCCHHHHHHHHHh-CcCCCCC-------CCCCcch
Confidence 9999999999999999 9998652 3566654
No 17
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.9e-52 Score=402.52 Aligned_cols=233 Identities=24% Similarity=0.353 Sum_probs=209.2
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCH
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~ 138 (337)
-.+++||++...++ ++|.+.+++++++++|+||+||| +|||||+++++..+++|++ |+.++++|||+|+++.+..++
T Consensus 7 ~~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~-g~~~~~~i~D~~a~~~d~~~~ 83 (323)
T 2cyb_A 7 LRLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTF 83 (323)
T ss_dssp HHHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCH
T ss_pred HHHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHC-CCcEEEEECCceeEcCCCCCH
Confidence 35688999887774 67777788788999999999999 7999999999999999997 888999999999999765699
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhhc
Q 019674 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQA 213 (337)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~---g~~-~~~~~g~~~Yp~lQa 213 (337)
+++++++++++++|+|+|+||+++.||.||+|..+ .++..++.+++++|++++.++. ++. ++.++|+|+||++||
T Consensus 84 ~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqa 163 (323)
T 2cyb_A 84 EEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQA 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHHH
Confidence 99999999999999999999999999999999754 6788888899999999999865 442 346999999999999
Q ss_pred CCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCH
Q 019674 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293 (337)
Q Consensus 214 ad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p 293 (337)
| |++.++++ ++|+|.||++|++++||+++|+|+++|..+++++||+|+| +||||| ++++|||+|+|
T Consensus 164 a--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~p 229 (323)
T 2cyb_A 164 L--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPP 229 (323)
T ss_dssp H--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCCH
T ss_pred H--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeCCCCCH
Confidence 9 57778875 5899999999999999999999999999999999999997 899999 46699999999
Q ss_pred HHHHHHHhhcCcCCCC
Q 019674 294 KAIKNKINKYAFSGGQ 309 (337)
Q Consensus 294 ~~i~~KI~k~A~t~g~ 309 (337)
++|++||++ |||+++
T Consensus 230 ~~i~~Ki~~-a~td~~ 244 (323)
T 2cyb_A 230 EEVERKIRK-AYCPAG 244 (323)
T ss_dssp HHHHHHHHT-SCCCTT
T ss_pred HHHHHHHHh-cCCCCC
Confidence 999999999 999764
No 18
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.9e-53 Score=419.58 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=205.9
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--- 135 (337)
..|++||+++++++.++|.+.+++ +++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+++.++
T Consensus 7 ~~L~~RG~~~~~~~~e~L~~~L~~-~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~-G~~~i~lIgD~ta~igdpsk~ 84 (432)
T 2jan_A 7 DELSWRGLIAQSTDLDTLAAEAQR-GPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA-GHRPIVLAGGATGMIGDPRDV 84 (432)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHHCCCCT
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHC-CCcEEEEEcCcEEEccCCccc
Confidence 568889999999999999988874 789999999999988999999999999999997 788888999999998754
Q ss_pred -----CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeCccccccccHHHHHH-HHhhcCHHHHHHhhCC-----CCCc
Q 019674 136 -----LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF-----TGED 201 (337)
Q Consensus 136 -----~~~e~i~~~~~~~---~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~-i~r~~t~~~~~~~~g~-----~~~~ 201 (337)
++.+++++|++++ ++.|+|+|+||++++||+||+|+++..+..+++ +++++|+++|+++..+ .+++
T Consensus 85 ~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~~i 164 (432)
T 2jan_A 85 GERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEGI 164 (432)
T ss_dssp TTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTTCC
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCCCc
Confidence 8899999999655 677899999999999999999997666777776 9999999999986432 4578
Q ss_pred cccccchhhhhcCCCCCCCcCccccC----CCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCc
Q 019674 202 HIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 277 (337)
Q Consensus 202 ~~g~~~Yp~lQaad~~~~~f~di~~l----~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~K 277 (337)
|+|+|+||+|||| |++.+ +++ ++|+|.||+||+++|||+|+|+|..+|..++.++||+++| +|
T Consensus 165 s~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~K 231 (432)
T 2jan_A 165 SYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADG--TK 231 (432)
T ss_dssp BHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CB
T ss_pred chHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--Cc
Confidence 9999999999999 57877 654 3679999999999999999999998899999999999998 79
Q ss_pred cCCCCCCCeEeccC---CHHHHHHHHhh
Q 019674 278 MSASDPNSAIYVTD---SAKAIKNKINK 302 (337)
Q Consensus 278 MSkS~~nsaI~L~D---~p~~i~~KI~k 302 (337)
||||.+|++|||+| +|+++++||++
T Consensus 232 MSKS~~nsaI~L~d~~tsp~~i~qki~~ 259 (432)
T 2jan_A 232 FGKSTGGGSLWLDPQMTSPYAWYQYFVN 259 (432)
T ss_dssp TTBCSSSCBCBSSTTTSCHHHHHHHHHT
T ss_pred CCCCCCCCeEEccCCCCCHHHHHHHHhc
Confidence 99999988999999 99999999999
No 19
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=4.7e-53 Score=413.62 Aligned_cols=232 Identities=22% Similarity=0.287 Sum_probs=194.1
Q ss_pred hhhhhcCc--ccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCC
Q 019674 59 HVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136 (337)
Q Consensus 59 ~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~ 136 (337)
..|++||+ ++++++++++| ++ +++++|+||+||| +|||||++++++.+|+|++ |+.++++|||+||+++++.
T Consensus 11 ~~l~~Rg~~e~~~~~~L~~~L---~~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~-g~~~i~~I~D~ha~t~~~~ 84 (372)
T 1n3l_A 11 LHLITRNLQEVLGEEKLKEIL---KE-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKA-GCEVTILFADLHAYLDNMK 84 (372)
T ss_dssp HHHHHTTCSEEECHHHHHHHH---TT-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTT
T ss_pred HHHHHcCCeeecCHHHHHHHH---hc-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHC-CCCEEEEEcCCceeeCCCC
Confidence 57899997 67777666666 44 6789999999999 8999999999999999985 8899999999999997665
Q ss_pred CHHHHHHHH---HHH-HH-HHHHcCCCCCceEEEeCcccc-ccccHHHHHHHHhhcCHHHHHHh----hCCCCCcccccc
Q 019674 137 SVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIGKV 206 (337)
Q Consensus 137 ~~e~i~~~~---~~~-~~-~ilA~G~dp~k~~I~~~s~~~-~~~~~~~~~~i~r~~t~~~~~~~----~g~~~~~~~g~~ 206 (337)
+.+++.++. .++ +. .++|||+||+++.||.||+|. ...++.+++++++++|++++++. .++.+++++|+|
T Consensus 85 ~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~~ 164 (372)
T 1n3l_A 85 APWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGL 164 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCcceee
Confidence 555554443 333 44 468999999999999999994 45778888999999999999985 345567899999
Q ss_pred chhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCe
Q 019674 207 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 286 (337)
Q Consensus 207 ~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsa 286 (337)
+||+|||| |++.++++ ++|+|.||++|++++||+++|+++++|..++.++||+|+| +|||||.+|++
T Consensus 165 ~YP~lQaa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSKS~~ns~ 231 (372)
T 1n3l_A 165 LYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESK 231 (372)
T ss_dssp HHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C-------CCS
T ss_pred ecchHhhc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccCCCCCCe
Confidence 99999999 57888875 5899999999999999999999999999999999999998 79999999989
Q ss_pred EeccCCHHHHHHHHhhcCcCCCCc
Q 019674 287 IYVTDSAKAIKNKINKYAFSGGQE 310 (337)
Q Consensus 287 I~L~D~p~~i~~KI~k~A~t~g~~ 310 (337)
|||+|+|++|++|||+ |||+++.
T Consensus 232 I~L~d~p~~i~kKi~~-A~td~~~ 254 (372)
T 1n3l_A 232 IDLLDRKEDVKKKLKK-AFCEPGN 254 (372)
T ss_dssp CBTTCCHHHHHHHHHT-CCCCTTC
T ss_pred EeccCCHHHHHHHHHH-ccCCCCC
Confidence 9999999999999999 9999864
No 20
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=3.7e-53 Score=409.41 Aligned_cols=230 Identities=20% Similarity=0.280 Sum_probs=193.3
Q ss_pred ceeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 85 ~~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
..++|+|++|||. ||||||++++ .+| ||+. +.++++|||+||+++ ..+++++++++++++++|+|||+||+|+
T Consensus 15 ~~~i~sG~~PTG~-lHLGh~vg~l-~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 15 KPIVFSGAQPSGE-LTIGNYMGAL-RQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp CCEEEEEECSCSC-CBHHHHHHTH-HHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCEEEECcCCCCc-ccHHHHHHHH-HHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 3579999999995 9999999985 666 8984 678899999999996 5899999999999999999999999999
Q ss_pred EEEeCcccccc--ccHHH-----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccc
Q 019674 163 FIFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (337)
Q Consensus 163 ~I~~~s~~~~~--~~~~~-----~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~v 235 (337)
+||.||+|+++ .+|.. +.++.|+.++++...+. .+++++|+|+||+|||| ||+.+++ |+|
T Consensus 90 ~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~a---d~v 156 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQT---NQV 156 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTC---SEE
T ss_pred EEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCc---eEE
Confidence 99999999863 23331 23455555555444432 25689999999999999 5788877 579
Q ss_pred ccccCchhHHHHHHHHhhhhCC------CCceeee---cceecCCCCCCCccCCCCCC--CeEeccCCHHHHHHHHhhcC
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYA 304 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~------~~p~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~p~~i~~KI~k~A 304 (337)
|||.||+||+++|||+|+|+|. +.|..+. +++||||+++++|||||.+| |+|||+|+|++|++|||+ |
T Consensus 157 pvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A 235 (346)
T 3n9i_A 157 PVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-A 235 (346)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-C
T ss_pred EeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-C
Confidence 9999999999999999999983 4566554 37899997656799999986 899999999999999999 9
Q ss_pred cCCCCchHHHHhhcCCCccc-hHHHHHHHH
Q 019674 305 FSGGQESVELHRKLGANLEV-LEVLFLQIF 333 (337)
Q Consensus 305 ~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f 333 (337)
||+++.+.++++..+++|++ +.|.|+..|
T Consensus 236 ~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~ 265 (346)
T 3n9i_A 236 MTDSDEPALIRYDVEKKAGVSNLLDILSGV 265 (346)
T ss_dssp CCCCCSSCCCCCCTTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCccccCCCCCCCChhHHHHHHHhc
Confidence 99998876677777999999 888888776
No 21
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.6e-53 Score=411.65 Aligned_cols=229 Identities=18% Similarity=0.230 Sum_probs=195.3
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
.++|+|++||| .||||||++++ .+| ||+. +.++++|||+||++. +.+++++++++++++++|+|||+||+|++
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l-~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 81 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGAL-RQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKST 81 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTG-GGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CEEEeCcCCCC-cccHHHHHHHH-HHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcE
Confidence 47999999999 59999999985 445 9995 678899999999997 68999999999999999999999999999
Q ss_pred EEeCcccccc--ccHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccc
Q 019674 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (337)
Q Consensus 164 I~~~s~~~~~--~~~~-----~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp 236 (337)
||.||+|+++ .+|. .+.++.|+.++++...+++ +++++|+|+||+|||| ||+.+++ |+||
T Consensus 82 i~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~a---d~vp 148 (341)
T 3sz3_A 82 LFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGA---HQVP 148 (341)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTC---SEEC
T ss_pred EEeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCC---CEEE
Confidence 9999999853 3343 1345666666666655543 5789999999999999 5788887 5799
Q ss_pred cccCchhHHHHHHHHhhhhCC---------CCceeee---cceecCCCCCCCccCCCCC--CCeEeccCCHHHHHHHHhh
Q 019674 237 CAIDQDPYFRMTRDVAPRIGY---------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINK 302 (337)
Q Consensus 237 ~G~DQd~~~~l~rdla~k~~~---------~~p~~l~---~~~lp~L~G~~~KMSkS~~--nsaI~L~D~p~~i~~KI~k 302 (337)
||.||+||+++|||+|+|+|. +.|..+. +++||||+++.+|||||.| +|+|||+|+|++|++|||+
T Consensus 149 vG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~ 228 (341)
T 3sz3_A 149 VGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK 228 (341)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT
T ss_pred eccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh
Confidence 999999999999999999982 2454443 5789999764579999998 6899999999999999999
Q ss_pred cCcCCCCchHHHHhhcCCCccc-hHHHHHHHH
Q 019674 303 YAFSGGQESVELHRKLGANLEV-LEVLFLQIF 333 (337)
Q Consensus 303 ~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f 333 (337)
|||+++.+.++++..||||++ ++|+|+.+|
T Consensus 229 -a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~ 259 (341)
T 3sz3_A 229 -AQTDAETPPRIAYDVENKAGIANLMGLYSAA 259 (341)
T ss_dssp -CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH
T ss_pred -ccCCCCCCcccccCCCCCcchhHHHHHHHHc
Confidence 999999888888888999999 999999877
No 22
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.8e-53 Score=406.11 Aligned_cols=223 Identities=17% Similarity=0.188 Sum_probs=194.8
Q ss_pred ceeEEEecCCCCCCcchhhHHH-HHHHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 85 KFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 85 ~~~vytG~~PTg~slHlGh~l~-~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
..++|+||+||| +||||||++ +...++||+ |+.++++|||+||++.+ .+++++++++++++++|+|+|+||++++
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 467999999999 799999996 567788998 78889999999999964 6899999999999999999999999999
Q ss_pred EEeCccccccccHHHHHHHHhhcCHHHHHH------hhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccc
Q 019674 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (337)
Q Consensus 164 I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~------~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~ 237 (337)
||.||+|++ .....+.++++++++++.+ ++++.+++|+|+|+||+|||| ||+.+++ |++||
T Consensus 79 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAa--------Dil~~~~---~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVKE--VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAA--------DILLFDT---RIVPV 145 (322)
T ss_dssp EEEGGGCTH--HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHH--------HHHHTTC---SEEEC
T ss_pred EEECCcchh--HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHH--------HHHHhCC---cEEEe
Confidence 999999985 3444556899999998754 345557899999999999999 5787877 57999
Q ss_pred ccCchhHHHHHHHHhhhhCC------CCceeee---cceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCC
Q 019674 238 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 308 (337)
Q Consensus 238 G~DQd~~~~l~rdla~k~~~------~~p~~l~---~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g 308 (337)
|.||+||+++|||+|+|+|. ++|..++ +++||+|+| +|||||.+| +|||+|+|++|++||++ |+|++
T Consensus 146 G~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~ 221 (322)
T 3tzl_A 146 GKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDS 221 (322)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCC
Confidence 99999999999999999985 5676655 799999998 899999987 99999999999999999 99998
Q ss_pred CchHHHHhhcCCCccc-hHHHHHHHH
Q 019674 309 QESVELHRKLGANLEV-LEVLFLQIF 333 (337)
Q Consensus 309 ~~t~e~~~~~ggn~~~-~~~~~l~~f 333 (337)
..+. ..+||++ ++++|+++|
T Consensus 222 ~~~~-----~~~~~~~~~v~~~~~~~ 242 (322)
T 3tzl_A 222 TALE-----DPKDHENCNIFKIAKLF 242 (322)
T ss_dssp CCTT-----SCCCGGGCHHHHHHGGG
T ss_pred cccc-----CCCCCcchhHHHHHHHh
Confidence 7652 3689999 999999887
No 23
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-52 Score=406.43 Aligned_cols=229 Identities=23% Similarity=0.287 Sum_probs=197.2
Q ss_pred CceeEEEecCCCCCCcchhhHHHHH-HHHhHHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~-~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~ 162 (337)
..+++|+|++||| +||||||+|++ ..++||++ |+.++++|||+||++.+..+++++++++++++++|+|||+||+++
T Consensus 11 ~~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTG-KLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 4578999999999 89999999885 56669997 788899999999999766788889999999999999999999999
Q ss_pred EEEeCccccccccHHHHHHHHhhcCHHHHHHhh---------CCCCCccccccchhhhhcCCCCCCCcCccccCCCCccc
Q 019674 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF---------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (337)
Q Consensus 163 ~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~---------g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c 233 (337)
+||.||+|++ +....+.+++.++++++.+.. +..+++|+|+|+||+|||| |++.+++ |
T Consensus 89 ~if~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~---~ 155 (340)
T 2g36_A 89 VIFVQSGVKE--HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKA---E 155 (340)
T ss_dssp EEEEGGGCTH--HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTC---S
T ss_pred EEEECCchHH--HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCC---C
Confidence 9999999974 444455688889999876642 2234689999999999999 5777877 5
Q ss_pred ccccccCchhHHHHHHHHhhhhCC------CCceee--ecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCc
Q 019674 234 LIPCAIDQDPYFRMTRDVAPRIGY------HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 305 (337)
Q Consensus 234 ~vp~G~DQd~~~~l~rdla~k~~~------~~p~~l--~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~ 305 (337)
+||+|.||+||+++|||+|+|+|+ ++|..+ ++++||+|+| +|||||.+| +|||+|+|++|++||++ |+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~ 231 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MM 231 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CC
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CC
Confidence 799999999999999999999873 567654 4799999998 699999987 89999999999999999 99
Q ss_pred CCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 306 SGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 306 t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
|+++ ++++.+||+|++ ++++|+++|.
T Consensus 232 td~~---~~~~~~~~~p~~~~v~~~~~~f~ 258 (340)
T 2g36_A 232 TDPA---RVRRSDPGNPENCPVWKYHQAFD 258 (340)
T ss_dssp CCTT---CSSTTSCCCGGGCHHHHHHHHTT
T ss_pred CCcc---cccccCCCCCchhHHHHHHHHHC
Confidence 9764 477899999999 9999999985
No 24
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=6.7e-52 Score=400.51 Aligned_cols=227 Identities=19% Similarity=0.187 Sum_probs=186.5
Q ss_pred eEEEecCCCCCCcchhhHHHHH-HHHhHHhhCC-ceEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFK-VPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 87 ~vytG~~PTg~slHlGh~l~~~-~~~~lQ~~~~-~~v~I~IaD~~a~~~r~-~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
++|+||+||| +|||||++|++ ...+||++ | +.++++|||+|+++.++ .+++++++++++++++|+|+|+||+++.
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~-G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~ 80 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEK-LGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT 80 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHH-HGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhc-CCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE
Confidence 6999999999 59999999885 44458997 5 78899999999999763 7899999999999999999999999999
Q ss_pred EEeCccccccccHHHHHHHHhhcCHHHHHHhh------CCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccccc
Q 019674 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (337)
Q Consensus 164 I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~------g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~ 237 (337)
||.||+|++ +....+.++++++++++.+.. ...+++|+|+|+||+|||| ||+.+++ |++||
T Consensus 81 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaa--------Dil~~~~---~lvp~ 147 (337)
T 2el7_A 81 LFVQSHVPE--HTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAA--------DILIYKA---DTVPV 147 (337)
T ss_dssp EEEGGGSTH--HHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHH--------HHHHTTC---CEEEC
T ss_pred EEEcCcchh--hHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHh--------hHHhhCC---cEEEc
Confidence 999999985 333334488888888877653 2346899999999999999 5777877 57999
Q ss_pred ccCchhHHHHHHHHhhhhC------CCCceeeec---ceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCC
Q 019674 238 AIDQDPYFRMTRDVAPRIG------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 308 (337)
Q Consensus 238 G~DQd~~~~l~rdla~k~~------~~~p~~l~~---~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g 308 (337)
|.||+||+++|||+|+|+| +++|..+++ ++||+|+| .+|||||.+| +|||+|+|++|++||++ |+|++
T Consensus 148 G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~ 224 (337)
T 2el7_A 148 GEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDP 224 (337)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCC
Confidence 9999999999999999985 478888775 89999998 6899999998 99999999999999999 99988
Q ss_pred CchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 309 QESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 309 ~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
+.+.+ .+||||++ ++++|+++|.
T Consensus 225 ~~~~~---~~~~~p~~~~v~~~~~~~t 248 (337)
T 2el7_A 225 QRIRL---SDPGDPERTILFTYLSYFA 248 (337)
T ss_dssp ----------------CHHHHHHHHHS
T ss_pred ccccc---cCCCCCchhhHHHHHHHcC
Confidence 76554 58999999 9999999883
No 25
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.4e-51 Score=429.11 Aligned_cols=259 Identities=20% Similarity=0.256 Sum_probs=220.2
Q ss_pred hhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHH-HHHhHHhhCCceEEEEecCcccccccC--CC
Q 019674 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (337)
Q Consensus 61 l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~-~~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~ 137 (337)
+++||..... +.++|.+.+++|+++++|+||+||| +|||||+++.. .+++||++ |+.++++|||+||+++++ .+
T Consensus 17 ~~~~~~~e~~-~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~~ 93 (690)
T 3p0j_A 17 LLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVGGE 93 (690)
T ss_dssp HHHHTCSEEE-CHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTTTH
T ss_pred HHhhCceeec-CHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCcch
Confidence 4667765433 4566777778888999999999999 79999977643 57789997 899999999999999764 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCccccc-c--ccHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhh
Q 019674 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G--AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPP 210 (337)
Q Consensus 138 ~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~-~--~~~~~~~~i~r~~t~~~~~~~~---g~~-~~~~~g~~~Yp~ 210 (337)
++++++++++++++|+|+|+||+++.||.||+|.. + .+|..+.++++++|+++|+++. ++. .++++|+|+||+
T Consensus 94 ~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YPl 173 (690)
T 3p0j_A 94 LEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPL 173 (690)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhHH
Confidence 99999999999999999999999999999999753 2 5788889999999999999753 432 248999999999
Q ss_pred hhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCC-CceeeecceecCCCCCCCccCCCCCCCeEec
Q 019674 211 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 211 lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~-~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
|||| |++.+++| ++|||.||+||+++|||+|+|+|+. +|..+++++||+|+++.+|||||.+||+|||
T Consensus 174 LQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 174 MQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp HHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred HHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 9999 58888886 5899999999999999999999986 7888899999999543479999999789999
Q ss_pred cCCHHHHHHHHhhcCcCCCC-chHHHHhhcCCC---ccc-hHHHHHHHHh
Q 019674 290 TDSAKAIKNKINKYAFSGGQ-ESVELHRKLGAN---LEV-LEVLFLQIFT 334 (337)
Q Consensus 290 ~D~p~~i~~KI~k~A~t~g~-~t~e~~~~~ggn---~~~-~~~~~l~~f~ 334 (337)
+|+|++|++|||+ |||+++ .+.++++..|++ ++. .+|+|+.+|.
T Consensus 243 ~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~ 291 (690)
T 3p0j_A 243 EDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVV 291 (690)
T ss_dssp TCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhh
Confidence 9999999999999 999854 466677777776 577 8889998873
No 26
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=2.4e-52 Score=406.10 Aligned_cols=229 Identities=15% Similarity=0.152 Sum_probs=185.1
Q ss_pred chhhhhcCcc--cccC-----CHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCccc
Q 019674 58 PHVFLRRGVF--FAHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (337)
Q Consensus 58 ~~~l~~Rgi~--~~~~-----d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a 130 (337)
.+.|++||++ ++++ +++++|+..++|+|+++|+||+|||++|||||+++++.++|||++ |+.++++|||+||
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~-G~~~~~lIaD~ha 90 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA-GHNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHC-CCcEEEEEcccee
Confidence 3788999999 8887 889888766666789999999999978999999999999999997 7889999999999
Q ss_pred ccccC---------CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEeCccccccccHHHH-HHHHhhcCHH
Q 019674 131 CMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNM-VKVAKCVTYN 189 (337)
Q Consensus 131 ~~~r~---------~~~e~i~~~~~~~~~~ilA~G~dp~k-----------~~I~~~s~~~~~~~~~~~-~~i~r~~t~~ 189 (337)
++.++ ++++++++|+++++++|+|+ +||++ +.|+.|++|..+..+..+ ..++++++++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~ 169 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMG 169 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHH
T ss_pred eecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHH
Confidence 98643 48999999999999999999 88754 899999999865444444 4589999999
Q ss_pred HHHHhhCC------CCCccccccchhhhhcCCCCCCCcCccccC----CCCcccccccccCchhHHHHHHHHhhhhCCCC
Q 019674 190 KVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 259 (337)
Q Consensus 190 ~~~~~~g~------~~~~~~g~~~Yp~lQaad~~~~~f~di~~l----~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~ 259 (337)
+|.++.++ .+++|+|+|+||+|||| ||+.+ +++ ++|||.||+||+++|||+|+|+|..+
T Consensus 170 ~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~DQ~~~i~l~rdla~r~n~~~ 238 (356)
T 2pid_A 170 TLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGSDQLGNIMSGYEFINKLTGED 238 (356)
T ss_dssp HHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEGGGHHHHHHHHHHHHHHSSCC
T ss_pred HHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHHhCCCC
Confidence 99987543 34789999999999999 57878 664 46899999999999999999999988
Q ss_pred ceeeecceecCCCCCCCccCCCCCCCeEeccC---CHHHHHHHHhh
Q 019674 260 PALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINK 302 (337)
Q Consensus 260 p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D---~p~~i~~KI~k 302 (337)
|..++.++||+|+| +|||||.+| +|||+| +|+++++||++
T Consensus 239 ~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 239 VFGITVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR 281 (356)
T ss_dssp CEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT
T ss_pred ccccccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc
Confidence 99999999999998 799999755 999999 99999999999
No 27
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=5.3e-52 Score=402.68 Aligned_cols=229 Identities=20% Similarity=0.248 Sum_probs=189.9
Q ss_pred CceeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 019674 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (337)
Q Consensus 84 ~~~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k 161 (337)
.++++|+||+||| +||||||++++ .+| ||+ ++.++++|||+||++.+ .+++++++++++++++|+|+|+||++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l-~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k 77 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVM-QSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQK 77 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTG-GGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHH-HHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3568999999998 79999999884 666 998 57789999999999975 89999999999999999999999999
Q ss_pred eEEEeCccccccccHHHHHHHHhhcCHHHHHHh---------hCC----CCCccccccchhhhhcCCCCCCCcCccccCC
Q 019674 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI---------FGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 228 (337)
Q Consensus 162 ~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~---------~g~----~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~ 228 (337)
+.||.||+|+++ ....+.++...+++++.+. .+| ++++++|+|+||+|||| |++.++
T Consensus 78 ~~if~qS~~~~~--~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~ 147 (348)
T 2yy5_A 78 ACLFLQSDLLEH--SMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQ 147 (348)
T ss_dssp EEEEEGGGCHHH--HHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTC
T ss_pred eEEEECCcccch--hHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhC
Confidence 999999999752 1112223334444444332 111 45789999999999999 578788
Q ss_pred CCcccccccccCchhHHHHHHHHhhhhC------CCCceeee---cceecCCCCCCCccCCCCCCC--eEeccCCHHHHH
Q 019674 229 DHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIK 297 (337)
Q Consensus 229 ~d~~c~vp~G~DQd~~~~l~rdla~k~~------~~~p~~l~---~~~lp~L~G~~~KMSkS~~ns--aI~L~D~p~~i~ 297 (337)
+ |+||||.||+||++++||+|+|+| +++|..++ +++||+|+|+.+|||||.+|+ +|||+|+|++|+
T Consensus 148 a---~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~ 224 (348)
T 2yy5_A 148 P---DIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVV 224 (348)
T ss_dssp C---SEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHH
T ss_pred c---cEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHH
Confidence 7 469999999999999999999997 56888887 699999999878999999985 999999999999
Q ss_pred HHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHH
Q 019674 298 NKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQIF 333 (337)
Q Consensus 298 ~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f 333 (337)
+|||+ |+|++..+++.+ .|++|++ +.++|+.+|
T Consensus 225 ~KI~~-a~td~~~~~~~~--~~~~p~v~~~~~~~~~~ 258 (348)
T 2yy5_A 225 KKIRQ-ATTDSFNKIRFA--SKTQPGVTNMLTILKAL 258 (348)
T ss_dssp HHHHT-CCCCSSCCCSCC--TTTCHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCccccccC--CCCCCchhhHHHHHHhC
Confidence 99999 999987666654 4678999 888898887
No 28
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=4.4e-51 Score=391.46 Aligned_cols=239 Identities=21% Similarity=0.266 Sum_probs=203.5
Q ss_pred hhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccCCCHH
Q 019674 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (337)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~~~~e 139 (337)
.+++||+ ....+.++|.+.++ ++++++|+||+||| +|||||+++++.++|||++ |+.++++|||+||++.+..+++
T Consensus 5 ~l~~r~~-~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e 80 (314)
T 2zp1_A 5 EMIKRNT-SEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNA-GFDIIILLADLAAYLNQKGELD 80 (314)
T ss_dssp HHHHTTC-SEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcCC-eecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHC-CCCEEEEEecceEecCCCCCHH
Confidence 4678995 33334444444455 68999999999999 7999999999999999997 8899999999999997667999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeCcccccc-ccHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhhcC
Q 019674 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAV 214 (337)
Q Consensus 140 ~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~~~-~~~~~~~~i~r~~t~~~~~~~~---g~~-~~~~~g~~~Yp~lQaa 214 (337)
++++++++++++|+|+|+| +.++.||+|..+ .+|..+.++++++|+++|.++. ++. +..|+|+|+||+||||
T Consensus 81 ~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa 157 (314)
T 2zp1_A 81 EIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN 157 (314)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH
Confidence 9999999999999999998 788889999864 5788888999999999999864 332 2249999999999999
Q ss_pred CCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHH
Q 019674 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (337)
Q Consensus 215 d~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~ 294 (337)
|++.++++ ++|+|.||+||++++|++++ ++|..+++++||+|+| .+||||| ++|+|||+|+|+
T Consensus 158 --------Dil~~~~~---~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~ 220 (314)
T 2zp1_A 158 --------TSHYLGVD---VAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDSPE 220 (314)
T ss_dssp --------HHHHHTCS---EEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCCHH
T ss_pred --------hHHhhCCC---EEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCc-ccccCCC-CcceecCCCCHH
Confidence 57878875 68999999999999999997 5899999999999996 3799999 567999999999
Q ss_pred HHHHHHhhcCcCCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 295 AIKNKINKYAFSGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 295 ~i~~KI~k~A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
+|++|||+ |||+++. ++. ++|+|+.+|.
T Consensus 221 ~i~~KI~~-a~td~~~-----------~~~~~~~~~~~~~~ 249 (314)
T 2zp1_A 221 EIRAKIKK-AYCPAGV-----------VEGNPIMEIAKYFL 249 (314)
T ss_dssp HHHHHHHH-SCCCTTC-----------CTTCHHHHHHHHHC
T ss_pred HHHHHHHh-CCCCCCC-----------CCCCcHHHHHHHHh
Confidence 99999999 9998753 344 6777877774
No 29
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1e-51 Score=410.14 Aligned_cols=230 Identities=20% Similarity=0.225 Sum_probs=191.9
Q ss_pred chhhhhcCc--ccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC
Q 019674 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (337)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~ 135 (337)
.+.+++||+ +++|++++++| ++++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+||++.++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~L---~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgD~ta~igdp 86 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAKL---KEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL-GHKVVLIIGDFTGMIGDP 86 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHHH---HTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHT-TCEEEEEECCCC------
T ss_pred HHHHHHcchHHhCCHHHHHHHH---hcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHC-CCCEEEEEccceEEecCC
Confidence 478899999 56665565555 567899999999999988999999999999999997 788999999999999743
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEeCccccccccHHHHHHHHhhcCHHHHHHhhCC------C
Q 019674 136 ---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------T 198 (337)
Q Consensus 136 ---------~~~e~i~~~~~~~~~~ilA~G~d--p~k~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~~~~~g~------~ 198 (337)
++.+++++|+..+.+.+. +|+| |+++.||+||+|.++.+|..++++++++|+++|+++.++ .
T Consensus 87 sgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~ 165 (432)
T 1h3f_A 87 SGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAG 165 (432)
T ss_dssp ---------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTT
T ss_pred CCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcC
Confidence 568889988766655544 7888 999999999999988899999999999999999866533 3
Q ss_pred CCccccccchhhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCcc
Q 019674 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 278 (337)
Q Consensus 199 ~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KM 278 (337)
+++|+|+|+||+|||| |++.++++ ++|+|.||++|+++|||+++|+|..++..+++++||+|+| .+||
T Consensus 166 ~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG-~~KM 233 (432)
T 1h3f_A 166 IPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG-REKM 233 (432)
T ss_dssp CCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTS-SSBC
T ss_pred CCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCC-cccc
Confidence 6799999999999999 57888864 6899999999999999999999988888999999999998 3599
Q ss_pred CCCCCCCeEeccCCHHHHHHHHhhcCcC
Q 019674 279 SASDPNSAIYVTDSAKAIKNKINKYAFS 306 (337)
Q Consensus 279 SkS~~nsaI~L~D~p~~i~~KI~k~A~t 306 (337)
|||.+| +|||+|+|+++++||++ +.+
T Consensus 234 SKS~~n-~I~L~dsp~~i~~Ki~~-~~d 259 (432)
T 1h3f_A 234 SKSLDN-YIGLTEPPEAMFKKLMR-VPD 259 (432)
T ss_dssp CGGGTC-CCBTTSCHHHHHHHHHT-SCG
T ss_pred CcCCCC-eeCCCCCHHHHHHHHhC-CCc
Confidence 999987 99999999999999999 744
No 30
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=8.6e-52 Score=409.12 Aligned_cols=231 Identities=15% Similarity=0.177 Sum_probs=201.1
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--- 135 (337)
..|.+||+++++++.++|.+.+++ +++++|+||+|||+||||||+++++.++|||++ |+.++++|||+|+++..+
T Consensus 5 ~~L~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk 82 (419)
T 2ts1_A 5 AELQWRGLVNQTTDEDGLRKLLNE-ERVTLYCGFDPTADSLHIGHLATILTMRRFQQA-GHRPIALVGGATGLIGDPSGK 82 (419)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCCc
Confidence 467889999999999999888874 789999999999988999999999999999997 788899999999998643
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeCccccccccHHHHHH-HHhhcCHHHHHHhhCC----CCCc
Q 019674 136 ------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (337)
Q Consensus 136 ------~~~e~i~~~~~~~---~~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~-i~r~~t~~~~~~~~g~----~~~~ 201 (337)
++.+++++|++.+ +..++++|+||++++||+|++|+.+..+..+++ +++++|+++|.++.++ ++++
T Consensus 83 ~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~i 162 (419)
T 2ts1_A 83 KSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGI 162 (419)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTCC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCCc
Confidence 4999999999755 556778999999999999999987766777666 9999999999887533 4678
Q ss_pred cccccchhhhhcCCCCCCCcCccccCCCCcccc-cccccCchhHHHHHHHHhhhh-CCCCceeeecceecCCCCCCCccC
Q 019674 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMS 279 (337)
Q Consensus 202 ~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~-vp~G~DQd~~~~l~rdla~k~-~~~~p~~l~~~~lp~L~G~~~KMS 279 (337)
|+|+|+||+|||| |++.+..+++|. +|+|.||+||+++|||+|+|+ |..+|..++.++||+++| +|||
T Consensus 163 s~~ef~YPlLQaa--------Dil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KMS 232 (419)
T 2ts1_A 163 SFTEFSYMMLQAY--------DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG--TKFG 232 (419)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS--CCTT
T ss_pred chHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc--cccc
Confidence 9999999999999 577772222344 569999999999999999999 988899999999999998 7999
Q ss_pred CCCCCCeEeccC---CHHHHHHHHhh
Q 019674 280 ASDPNSAIYVTD---SAKAIKNKINK 302 (337)
Q Consensus 280 kS~~nsaI~L~D---~p~~i~~KI~k 302 (337)
||.+| +|||+| +|+++++||++
T Consensus 233 KS~~n-aI~L~d~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 233 KTESG-TIWLDKEKTSPYEFYQFWIN 257 (419)
T ss_dssp CCSSC-CCBSSTTTSCHHHHHHHHHT
T ss_pred CCCCC-eEecCCCCCCHHHHHHHHhc
Confidence 99976 999999 99999999999
No 31
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=9e-52 Score=398.26 Aligned_cols=227 Identities=21% Similarity=0.310 Sum_probs=190.0
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~ 163 (337)
.++|+||+||| +|||||+++++ .+| ||+ |+.++++|||+||++. +.+++++++++++++++|+|+|+||+++.
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l-~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 76 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGAL-RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQAT 76 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTH-HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHH-HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 37999999998 89999999885 556 687 6778999999999997 68999999999999999999999999999
Q ss_pred EEeCcccccc--ccH-HH----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccccc
Q 019674 164 IFSDFDYVGG--AFY-KN----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (337)
Q Consensus 164 I~~~s~~~~~--~~~-~~----~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~vp 236 (337)
||.||+|+++ ..| .. +.++.|+.++++..++ .+++++|+|+||+|||| ||+.+++ |++|
T Consensus 77 if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~---~~vp 142 (328)
T 1i6k_A 77 LFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLMAA--------DILLYNT---DIVP 142 (328)
T ss_dssp EEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHHHH--------HHHTTTC---SEEE
T ss_pred EEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHHHH--------HHHHhCC---CEEe
Confidence 9999999753 222 21 2344555544443332 26799999999999999 5777877 4699
Q ss_pred cccCchhHHHHHHHHhhhhC------CCCceeee---cceecCCCCCCCccCCCCCCCe--EeccCCHHHHHHHHhhcCc
Q 019674 237 CAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAF 305 (337)
Q Consensus 237 ~G~DQd~~~~l~rdla~k~~------~~~p~~l~---~~~lp~L~G~~~KMSkS~~nsa--I~L~D~p~~i~~KI~k~A~ 305 (337)
+|.||+||++++||+|+|+| ++.|..++ +++||+|+|+++|||||.+|++ |||+|+|++|++|||+ |+
T Consensus 143 vG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~ 221 (328)
T 1i6k_A 143 VGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AV 221 (328)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CC
T ss_pred cccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cC
Confidence 99999999999999999998 45777664 6999999998789999999867 9999999999999999 99
Q ss_pred CCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 306 SGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 306 t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
|++..++..+. +++|++ +.+.|+.+|.
T Consensus 222 td~~~~~~~~~--~~~p~v~~~~~~~~~~~ 249 (328)
T 1i6k_A 222 TDSEGTIRYDK--EAKPGISNLLNIYSTLS 249 (328)
T ss_dssp CCSSCCCCCBT--TTBHHHHHHHHHHHHHH
T ss_pred CCCccccccCC--CCCcchhhHHHHHHHCC
Confidence 99877655433 668999 8889988763
No 32
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.6e-51 Score=399.67 Aligned_cols=229 Identities=26% Similarity=0.282 Sum_probs=194.9
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHHHHHh--HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~~~~~--lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (337)
++++++|+||+|||. ||||||++++ .+| ||++ +.++++|||+|+++.++.+++++++++++++++|+|+|+||+
T Consensus 20 ~~~~~vysG~~PTG~-lHLGn~~g~l-~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 20 PARPRVLTGDRPTGA-LHLGHLAGSL-QNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -CCSEEEEEECCSSC-CBHHHHHHTH-HHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcEEEEeeCCCCC-ccHHHHHHHH-HHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 467899999999995 9999999985 677 9986 567888999999997679999999999999999999999999
Q ss_pred ceEEEeCccccccccHHHHHHHHhhcCHHHH---------HHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCc
Q 019674 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV---------VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 231 (337)
Q Consensus 161 k~~I~~~s~~~~~~~~~~~~~i~r~~t~~~~---------~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~ 231 (337)
+++||.||+|+++ ....+.++..+++++| .++.|+.+++|+|+|+||+|||| |++.+++
T Consensus 96 k~~i~~qS~~~~~--~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~-- 163 (351)
T 1yi8_B 96 KTTCVVQSAVPEL--AELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGA-- 163 (351)
T ss_dssp TEEEEEGGGCTHH--HHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTC--
T ss_pred hcEEEEcCchhhH--HHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCC--
Confidence 9999999999852 2222235555555554 44456667899999999999999 5777877
Q ss_pred ccccccccCchhHHHHHHHHhhhhC------CCCceeee--cceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhc
Q 019674 232 RCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 303 (337)
Q Consensus 232 ~c~vp~G~DQd~~~~l~rdla~k~~------~~~p~~l~--~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~ 303 (337)
|++|+|.||+||+++|||+|+|+| +++|..++ +++||+|+| ++|||||.+| +|||+|+|++|++||++
T Consensus 164 -~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~- 239 (351)
T 1yi8_B 164 -TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG- 239 (351)
T ss_dssp -SEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-
T ss_pred -CEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-
Confidence 579999999999999999999986 36787653 789999988 3599999998 99999999999999999
Q ss_pred CcCCCCchHHHHhhcCCCccc-hHHHHHHHHh
Q 019674 304 AFSGGQESVELHRKLGANLEV-LEVLFLQIFT 334 (337)
Q Consensus 304 A~t~g~~t~e~~~~~ggn~~~-~~~~~l~~f~ 334 (337)
|+|++. ++++.+|||++. .++.|+++|.
T Consensus 240 a~td~~---~~~~~~~~~~~~~~~~~~l~~~~ 268 (351)
T 1yi8_B 240 MYTDPG---HLRASDPGRVEGNPVFTFLDAFD 268 (351)
T ss_dssp CCCCTT---CCSTTSCCCCTTCTTHHHHHHHC
T ss_pred cCCCcc---cccccCCCCCccchHHHHHHHHc
Confidence 999764 678899999999 8999999884
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1e-50 Score=402.24 Aligned_cols=230 Identities=18% Similarity=0.271 Sum_probs=203.1
Q ss_pred hhhhhcCcccccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC---
Q 019674 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (337)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~--- 135 (337)
..|++||+++++++.++|.+.+++ +++++|+||+|||+||||||+++++.++|||++ |+.++++|||+|+++..+
T Consensus 7 ~~l~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk 84 (420)
T 1jil_A 7 EDLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEH-GHRPIVLIGGGTGMIGDPSGK 84 (420)
T ss_dssp HHHHHTTCCCCBSCHHHHHHHHHH-SCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCcc
Confidence 567889999999998888877764 789999999999988999999999999999997 788899999999998643
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEeCccccccccHHHHHH-HHhhcCHHHHHHhhCC----CCCc
Q 019674 136 ------LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (337)
Q Consensus 136 ------~~~e~i~~~~~~~~~~ilA~G~dp---~k~~I~~~s~~~~~~~~~~~~~-i~r~~t~~~~~~~~g~----~~~~ 201 (337)
++.+++++|++++.++++++ +|| ++++||+|++|+.+..+.++++ +++++|+++|.++..+ ++++
T Consensus 85 ~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~i 163 (420)
T 1jil_A 85 SEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGI 163 (420)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTTC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCCc
Confidence 49999999999999999988 888 9999999999986656666665 9999999999987655 4689
Q ss_pred cccccchhhhhcCCCCCCCcCccccCCCCcccc-cccccCchhHHHHHHHHhhhh-CCCCceeeecceecCCCCCCCccC
Q 019674 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMS 279 (337)
Q Consensus 202 ~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~-vp~G~DQd~~~~l~rdla~k~-~~~~p~~l~~~~lp~L~G~~~KMS 279 (337)
|+|+|+||+|||| |++.+..+++|. +|+|.||+||+++|||+|+|+ |..+|..+++++||+++| +|||
T Consensus 164 s~~ef~YplLQaa--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG--~KMS 233 (420)
T 1jil_A 164 SYTEFTYTILQAI--------DFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG--KKFG 233 (420)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS--CBTT
T ss_pred chHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc--cccc
Confidence 9999999999999 577772223343 579999999999999999999 988899999999999998 7999
Q ss_pred CCCCCCeEeccC---CHHHHHHHHhh
Q 019674 280 ASDPNSAIYVTD---SAKAIKNKINK 302 (337)
Q Consensus 280 kS~~nsaI~L~D---~p~~i~~KI~k 302 (337)
||.+| +|||+| +|+++++||++
T Consensus 234 KS~~n-aI~L~d~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 234 KSESG-AVWLDAEKTSPYEFYQFWIN 258 (420)
T ss_dssp BCSSS-BCBSSTTTSCHHHHHHHHHT
T ss_pred CCCCC-eEecCCCCCCHHHHHHHHhc
Confidence 99976 999999 99999999999
No 34
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-51 Score=400.71 Aligned_cols=236 Identities=22% Similarity=0.253 Sum_probs=194.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhh-CCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CC
Q 019674 60 VFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (337)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~-~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~ 137 (337)
.|++|| +....+.+.|.+.+++ ++++++|+||+||| +|||||++++++..++|++ |+.++++|+|+||++++. .+
T Consensus 14 ~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~-g~~~ii~I~D~ha~t~~~~~~ 90 (394)
T 2dlc_X 14 GLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKA-GCEVTVLLADLHAFLDNMKAP 90 (394)
T ss_dssp HHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTSSC
T ss_pred HHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHc-CCcEEEEEcCCccccCCCCCc
Confidence 567899 5555566777777774 67889999999999 8999999999988888885 889999999999999765 67
Q ss_pred HHHHHHHHH----HHHHHHHHcCCCCCceEEEeCccccc-cccHHHHHHHHhhcCHHHHHHhh----CCCCCccccccch
Q 019674 138 VEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVSF 208 (337)
Q Consensus 138 ~e~i~~~~~----~~~~~ilA~G~dp~k~~I~~~s~~~~-~~~~~~~~~i~r~~t~~~~~~~~----g~~~~~~~g~~~Y 208 (337)
.+.++.+++ ...+.|+|||+||+++.||.||+|.. ..++.+++.+++++|++++++.- ++.+++++|+|+|
T Consensus 91 ~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~Y 170 (394)
T 2dlc_X 91 LEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIY 170 (394)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceeeec
Confidence 777777753 23346789999999999999999974 46778888999999999998752 3346789999999
Q ss_pred hhhhcCCCCCCCcCccccCCCCcccccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEe
Q 019674 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 288 (337)
Q Consensus 209 p~lQaad~~~~~f~di~~l~~d~~c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 288 (337)
|+|||| |++.++++ ++|+|.||++|++++||+++|+|+++|..+++++||+|++ |+|||||.+|++||
T Consensus 171 P~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~~ns~I~ 238 (394)
T 2dlc_X 171 PLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASDPNSKID 238 (394)
T ss_dssp HHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC-----------CCSCB
T ss_pred hhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCCCCCEEe
Confidence 999999 57778875 4789999999999999999999999999999999999992 48999999998899
Q ss_pred ccCCHHHHHHHHhhcCcCCCCch
Q 019674 289 VTDSAKAIKNKINKYAFSGGQES 311 (337)
Q Consensus 289 L~D~p~~i~~KI~k~A~t~g~~t 311 (337)
|+|+|++|++|||+ |||+++.+
T Consensus 239 L~D~p~~i~kKI~k-a~Td~~~~ 260 (394)
T 2dlc_X 239 LLEEPKQVKKKINS-AFCSPGNV 260 (394)
T ss_dssp TTCCHHHHHHHHHH-SCCCTTCC
T ss_pred ccCCHHHHHHHHHH-hcCCCCCC
Confidence 99999999999999 99998654
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.4e-49 Score=390.72 Aligned_cols=231 Identities=14% Similarity=0.149 Sum_probs=190.8
Q ss_pred hhhhhcCccc-ccCCHHHHHHHHhhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC--
Q 019674 59 HVFLRRGVFF-AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (337)
Q Consensus 59 ~~l~~Rgi~~-~~~d~~~ll~~~~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-- 135 (337)
..|.+||+++ .+++.+.|.+.++ ++++++|+||+|||+|||||||++++.++|||++ |+.++++|||+|+++.++
T Consensus 38 ~~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~-G~~~~~lIgD~haligdpsg 115 (392)
T 1y42_X 38 DLFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE-GYKAFTLIGGSTAKIGDPTG 115 (392)
T ss_dssp HHHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHH-TCEEEEEECTTTTTTCCCCC
T ss_pred HHHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHc-CCcEEEEEcCceeEeCCCCC
Confidence 5688899999 4456775555444 5789999999999988999999999999999998 788899999999998643
Q ss_pred -------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEeCccccccccHHHHH-HHHhhcCHHHHHH
Q 019674 136 -------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVG 193 (337)
Q Consensus 136 -------~~~e~i~~~~~~~~~~ilA~-----------G~d---p~k~~I~~~s~~~~~~~~~~~~-~i~r~~t~~~~~~ 193 (337)
++.+++++|++.+.++++|+ |+| |+++.||+|++|..+..+.+++ .+++++++++|.+
T Consensus 116 k~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~ 195 (392)
T 1y42_X 116 RLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLS 195 (392)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHS
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhh
Confidence 48889999998887777765 456 6899999999997666677777 5999999999875
Q ss_pred h------hCCCCCccccccchhhhhcCCCCCCCcCccccCCCCcccc-cccccCchhHHHHHHHHhhhhCC---------
Q 019674 194 I------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGY--------- 257 (337)
Q Consensus 194 ~------~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~-vp~G~DQd~~~~l~rdla~k~~~--------- 257 (337)
+ ++..+++|+|+|+||+|||| ||+.+..+++|. +|||.||+||+++|||+|+|+|.
T Consensus 196 ~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~ 267 (392)
T 1y42_X 196 RDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERK 267 (392)
T ss_dssp SHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred hhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcccccccc
Confidence 4 33346799999999999999 577674223343 57999999999999999999863
Q ss_pred --------CCceeeecceecCCCCCCCccCCCCCCCeEeccC---CHHHHHHHHhh
Q 019674 258 --------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINK 302 (337)
Q Consensus 258 --------~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D---~p~~i~~KI~k 302 (337)
.+|..+++++||+|+| +|||||.+| +|||+| +|+++++||++
T Consensus 268 ~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~ 320 (392)
T 1y42_X 268 YVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR 320 (392)
T ss_dssp HHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT
T ss_pred ccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc
Confidence 5678889999999998 799999876 999999 99999999998
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.3e-44 Score=376.84 Aligned_cols=228 Identities=13% Similarity=0.102 Sum_probs=194.0
Q ss_pred CCceeEEEecCCCCCCcchhhHHHHHH--HHhHHhhCCceEEEEecCcccccccC--CCHHHHHHHHHHHHHHHHHcCCC
Q 019674 83 GEKFYLYTGRGPSSEALHLGHLVPFMF--TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFD 158 (337)
Q Consensus 83 ~~~~~vytG~~PTg~slHlGh~l~~~~--~~~lQ~~~~~~v~I~IaD~~a~~~r~--~~~e~i~~~~~~~~~~ilA~G~d 158 (337)
..+..++++- ||| +|||||++++++ .+|+|.++|++++|+||||||+++++ .+++++++++.+++++|+|+|+|
T Consensus 380 ~~~l~~~~~p-s~g-~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACMWMP-ALL-KVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEEECC-CCS-SCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEEecC-CCC-CcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4567788776 776 799999999987 45567778999999999999999987 89999999999999999999999
Q ss_pred CCceEEEeCcccccc---ccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCccccCCCCccccc
Q 019674 159 VTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (337)
Q Consensus 159 p~k~~I~~~s~~~~~---~~~~~~~~i~r~~t~~~~~~~~g~~~~~~~g~~~Yp~lQaad~~~~~f~di~~l~~d~~c~v 235 (337)
+ ++.|+.||+|... .||.+++++++++|+++|+++++ .+++++|+|.||+|||| |++.+++| ++
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~ 524 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HV 524 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EE
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EE
Confidence 8 6766667777644 69999999999999999999986 57889999999999999 57888987 48
Q ss_pred ccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcCCC-------
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG------- 308 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~g------- 308 (337)
|+|+||++|++|+||+++|++ +|+.++++++|+|+|++.+||||.++|+|+|+|+|++|++|||| |||++
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~ve~np~ 601 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPV 601 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTTCSCSHH
T ss_pred ecccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCCCCCChH
Confidence 999999999999999999954 68888899999999987777788888999999999999999999 99964
Q ss_pred ------------CchHHHHhhcCCCccchHHH
Q 019674 309 ------------QESVELHRKLGANLEVLEVL 328 (337)
Q Consensus 309 ------------~~t~e~~~~~ggn~~~~~~~ 328 (337)
..++++++++|||+++..+.
T Consensus 602 l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~e 633 (690)
T 3p0j_A 602 ISVAQHLLAQHGALSIERGEANGGNVSYNTPE 633 (690)
T ss_dssp HHHHHHHHHHHSCEEECCCTTTTCCEEESSHH
T ss_pred HHHHHHHhccCCceEEechhhhCCCCCccCHH
Confidence 56778888999998884444
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.60 E-value=8.8e-07 Score=83.76 Aligned_cols=187 Identities=15% Similarity=0.184 Sum_probs=97.6
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
.||| .|||||+.++ +.+| +.+..+...++-|.|...- |. ...+...+.+++.++|++++.. ++.||+..
T Consensus 13 sPtG-~LHiG~~rta-l~n~l~Ar~~~g~~ilRieDtD~~--R~-----~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAA-LGSYLQARARQGRWLVRIEDIDPP--RE-----VPGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTS-CCCHHHHHHH-HHHHHHHHHTTCEEEEEECCSCGG--GS-----CTTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCC-CccHHHHHHH-HHHHHHHHhcCCeEEEEEecCCch--hh-----HHHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 4567 6999999999 4667 3344677888888885311 11 1345557788999999999875 56677654
Q ss_pred ccccHHHHHHH---Hh----hcCHHHHHHh---h-CC--C---C------------------Cccccccchhh-hhcCCC
Q 019674 172 GGAFYKNMVKV---AK----CVTYNKVVGI---F-GF--T---G------------------EDHIGKVSFPP-VQAVPS 216 (337)
Q Consensus 172 ~~~~~~~~~~i---~r----~~t~~~~~~~---~-g~--~---~------------------~~~~g~~~Yp~-lQaad~ 216 (337)
+ .|..-+-++ +. ..|..++.+. + |. . . ..-.|.+.++. .+.-
T Consensus 83 ~-~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~-- 159 (298)
T 1nzj_A 83 D-AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLARE-- 159 (298)
T ss_dssp H-HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHS--
T ss_pred H-HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCC--
Confidence 2 222222222 21 1344555432 1 10 0 0 01123333332 2333
Q ss_pred CCCCcCccccCCCCc-c---------------cccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCC
Q 019674 217 FPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 280 (337)
Q Consensus 217 ~~~~f~di~~l~~d~-~---------------c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSk 280 (337)
|+...++|- + +.|.-|.|+..+--.-..+.+-+|.+.|...|.++|.+.+| +||||
T Consensus 160 ------D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSK 231 (298)
T 1nzj_A 160 ------DFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSK 231 (298)
T ss_dssp ------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC----------
T ss_pred ------CEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--Ccccc
Confidence 444444432 0 11223888776555555566889999999888888888887 89999
Q ss_pred CCCCCeEeccCCHHHHHHHH
Q 019674 281 SDPNSAIYVTDSAKAIKNKI 300 (337)
Q Consensus 281 S~~nsaI~L~D~p~~i~~KI 300 (337)
+.++.+|--.+...-+..=+
T Consensus 232 R~g~~~v~~~~~~~~~~~~l 251 (298)
T 1nzj_A 232 QNHAPALPKGDPRPVLIAAL 251 (298)
T ss_dssp -----CCCSSCCHHHHHHHH
T ss_pred cCCccChhcCCccHHHHHHH
Confidence 99876555445544444333
No 38
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.55 E-value=5.7e-07 Score=89.99 Aligned_cols=192 Identities=11% Similarity=0.117 Sum_probs=118.6
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~-------I 164 (337)
.||| .|||||+..+ +.+| +.+..|...++-|-|.-.- | .. ..+...++.++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rta-l~n~l~Ar~~~G~filRieDtD~~--R-~~----~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIA-LFNYAWARRNGGRFIVRIEDTDRA--R-YV----PGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHH-HHHHHHHHHTTCEEEECBCCCCTT--S-CC----TTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHH-HHHHHHHHHcCCEEEEEeCcCCCc--c-cC----hHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 4678 6999999999 4566 5555677777778775421 1 11 2344467788889999998763 4
Q ss_pred EeCccccccccHH---HHHHH--------------------------HhhcCHHHHHHhh--CC--------C-C-Ccc-
Q 019674 165 FSDFDYVGGAFYK---NMVKV--------------------------AKCVTYNKVVGIF--GF--------T-G-EDH- 202 (337)
Q Consensus 165 ~~~s~~~~~~~~~---~~~~i--------------------------~r~~t~~~~~~~~--g~--------~-~-~~~- 202 (337)
|.||+..+ .|+. .+++- +|..+..+..+.. |. . + ...
T Consensus 80 ~~QS~r~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLP-LYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHH-HHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHH-HHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 77887652 1221 11111 2234444433321 21 0 0 111
Q ss_pred ----ccccchhhhhcCCCCCCCcCccccCCCCc-c---------------cccccccCchhHHHHHHHHhhhhCCCCcee
Q 019674 203 ----IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 262 (337)
Q Consensus 203 ----~g~~~Yp~lQaad~~~~~f~di~~l~~d~-~---------------c~vp~G~DQd~~~~l~rdla~k~~~~~p~~ 262 (337)
.|++.++..+.- |+...++|. + +.|..|.|+..+...-.-+.+.+|.+.|..
T Consensus 159 ~D~~~G~~~~~~~~~~--------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 159 KDELRGVVVYDNQEIP--------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp EETTTEEEEEEGGGSC--------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred EeccceeEeecccCCC--------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 255666766554 455555542 0 123449999888888888889999988887
Q ss_pred eecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhhcCcC
Q 019674 263 IESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINKYAFS 306 (337)
Q Consensus 263 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 306 (337)
.|.+++.+.+| +||||+.++.+ |.+ .|+.|.+-+..--++
T Consensus 231 ~h~~li~~~~g--~klSKR~g~~~--l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 231 YHMPLLRNPDK--TKISKRKSHTS--LDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp EEECCCBCTTS--CBCCTTTSCCB--HHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred EEeeeeeCCCC--Cccccccchhh--HHHHHHCCCCHHHHHHHHHHhccC
Confidence 77777777777 89999997643 332 577777776553444
No 39
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.52 E-value=1.5e-06 Score=87.43 Aligned_cols=193 Identities=13% Similarity=0.147 Sum_probs=115.0
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCcccc
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~~~s~~~ 171 (337)
-||| .|||||+..++ .+| +.+..|...++-|.|.-. .| .. ..+...+..++..+|++++.. ++.||+..
T Consensus 9 SPtG-~lHiG~artal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~i~~dL~wLGl~wde~-~~~QS~r~ 78 (492)
T 2cfo_A 9 SPTG-NLHIGTARTAV-FNWLYARHRGGKFILRIEDTDR--ER-SR----PEYTENILEGLQWLGLTWDEG-PYFQSDRL 78 (492)
T ss_dssp CTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCSS--SS-CC----HHHHHHHHHHHHHTTCCCSEE-EEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEeeCCc--cc-cc----hHHHHHHHHHHHHcCCCCCCC-CccccCCH
Confidence 4667 69999999994 466 445568888888888642 11 22 345557788888999998764 57787765
Q ss_pred ccccHHHHHHH-----------------------------------HhhcCHHHHHHh--hCC------CCC--------
Q 019674 172 GGAFYKNMVKV-----------------------------------AKCVTYNKVVGI--FGF------TGE-------- 200 (337)
Q Consensus 172 ~~~~~~~~~~i-----------------------------------~r~~t~~~~~~~--~g~------~~~-------- 200 (337)
. .|..-+-++ +|..+..+..+. .|. +..
T Consensus 79 ~-~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~ 157 (492)
T 2cfo_A 79 D-LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQ 157 (492)
T ss_dssp H-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEE
T ss_pred H-HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEE
Confidence 2 222111111 111222221111 111 000
Q ss_pred -ccccccchhhhhc-CCCCCCCcCccccCCCC------cc---------------cccccccCchhHHHHHHHHhhhhCC
Q 019674 201 -DHIGKVSFPPVQA-VPSFPSSFPHLFSGKDH------LR---------------CLIPCAIDQDPYFRMTRDVAPRIGY 257 (337)
Q Consensus 201 -~~~g~~~Yp~lQa-ad~~~~~f~di~~l~~d------~~---------------c~vp~G~DQd~~~~l~rdla~k~~~ 257 (337)
.--|.+.++.-+. - |+...++| .| +.|..|.|+..+--.-..+.+.+|.
T Consensus 158 D~v~G~~~~~~~~~~~--------D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~ 229 (492)
T 2cfo_A 158 DLVRGRVSWQGADLGG--------DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGA 229 (492)
T ss_dssp ETTTEEEEEEGGGGCS--------SEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC
T ss_pred ecceeeeeecccccCC--------CeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC
Confidence 0114444454444 3 44444444 11 3355788887776666777789999
Q ss_pred CCceeeecceecCCCCCCCccCCCCCCCeEe-ccC---CHHHHHHHHhhcCcC
Q 019674 258 HKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINKYAFS 306 (337)
Q Consensus 258 ~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~-L~D---~p~~i~~KI~k~A~t 306 (337)
+.|.-.|.+++.+.+| +|||||.++.+|- +.+ .|+.|..=+..--.+
T Consensus 230 ~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s 280 (492)
T 2cfo_A 230 TPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWS 280 (492)
T ss_dssp CCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBC
T ss_pred CCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 9998888999999987 8999999764331 111 577777776653343
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.32 E-value=3.6e-06 Score=84.77 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=112.0
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 164 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~-------~I 164 (337)
.||| .|||||+..+ +.+| +.+..|...++-|-|.-.- | .. ..+...++.++..+|++++.. -+
T Consensus 14 sPTG-~LHiG~~rtA-L~n~l~Ar~~gG~fiLRieDtD~~--R-~~----~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTA-LFNWAYARHTGGTFVFRIEDTDAQ--R-DS----EESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHH-HHHHHHHHHHTCEEEECBCCCCTT--T-CC----HHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHH-HHHHHHHHHcCCEEEEEECcCCCc--c-cC----hHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 4667 6999999999 4555 4454566666667775321 1 22 244456778888999999873 47
Q ss_pred EeCccccccccHH---HHHHHH-------------------------------hhcCHHHHHHhh--CCC------C---
Q 019674 165 FSDFDYVGGAFYK---NMVKVA-------------------------------KCVTYNKVVGIF--GFT------G--- 199 (337)
Q Consensus 165 ~~~s~~~~~~~~~---~~~~i~-------------------------------r~~t~~~~~~~~--g~~------~--- 199 (337)
|.||+..+ .|+. .+++-+ |..+..+..+.. |.. -
T Consensus 85 ~~QS~r~~-~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 163 (498)
T 2ja2_A 85 YRQSQRAE-IYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDD 163 (498)
T ss_dssp CBGGGCHH-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eeeecCHH-HHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCC
Confidence 78887652 2211 111111 112222222211 110 0
Q ss_pred Cc-----cccccchhhhhcCCCCCCCcCccccCCCCc-c---------------cccccccCchhHHHHHHHHhhhh---
Q 019674 200 ED-----HIGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRI--- 255 (337)
Q Consensus 200 ~~-----~~g~~~Yp~lQaad~~~~~f~di~~l~~d~-~---------------c~vp~G~DQd~~~~l~rdla~k~--- 255 (337)
.+ -.|.+.++.-+.- |+...++|. + +.|..|.|+..+...-+.+.+.+
T Consensus 164 ~~~~~D~v~G~i~~~~~~~~--------D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~ 235 (498)
T 2ja2_A 164 DLAWNDLVRGPVTFAAGSVP--------DFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRI 235 (498)
T ss_dssp CEEEEETTTEEEEECTTCSC--------CCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHT
T ss_pred ceEEEecccceEeecccccC--------cceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhh
Confidence 01 1244555544433 455444442 0 12335999999888777888888
Q ss_pred --CCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 256 --GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 256 --~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
|.+.|...|.+++.+.+| +||||+.++. .|.+ .|+.+..-+..
T Consensus 236 g~g~~~P~~~h~plil~~~g--~KLSKR~g~~--~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 236 GVAERIPKFAHLPTVLGEGT--KKLSKRDPQS--NLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp TSCCCCCEEEEECCEECSSS--SBCCTTSGGG--BHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCCCCeEEEeeeeECCCC--CcccccCCcc--cHHHHHhCCCCHHHHHHHHHH
Confidence 998998888899888887 8999998653 3332 57777766655
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.26 E-value=2.6e-06 Score=85.60 Aligned_cols=191 Identities=12% Similarity=0.159 Sum_probs=113.5
Q ss_pred CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 019674 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (337)
Q Consensus 93 ~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~-------I 164 (337)
.||| .|||||+..+ +.+| +.+..|...++-|-|.-.- | .. ..+...+..++..+|++++... +
T Consensus 33 sPtG-~LHiG~~rta-l~n~l~Ar~~~G~filRieDtD~~--R-~~----~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp 103 (488)
T 3afh_A 33 SPTG-HLHVGGARTA-LFNWMFARKEGGKFILRIEDTDTE--R-SS----REYEQQILESLRWCGLDWDEGPDIGGDFGP 103 (488)
T ss_dssp CCSS-SCBHHHHHHH-HHHHHHHHHHTCEEEECBCCCCTT--T-CC----HHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHH-HHHHHHHHHcCCEEEEEEeeCCcc--c-cc----HHHHHHHHHHHHHcCCCCCcCCCCCCCCCC
Confidence 4567 6999999999 4566 4455577777777775321 1 22 3444467788889999998753 5
Q ss_pred EeCccccccccHHHHH-HH---Hhhc----CHHHH-------------HHhhCC--------CC-C-----ccccccchh
Q 019674 165 FSDFDYVGGAFYKNMV-KV---AKCV----TYNKV-------------VGIFGF--------TG-E-----DHIGKVSFP 209 (337)
Q Consensus 165 ~~~s~~~~~~~~~~~~-~i---~r~~----t~~~~-------------~~~~g~--------~~-~-----~~~g~~~Yp 209 (337)
|.||+..+ .|..++ ++ +... |-.++ ....|. .+ . .-.|.+.++
T Consensus 104 ~~QSer~~--~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~ 181 (488)
T 3afh_A 104 YRQSERLE--IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFD 181 (488)
T ss_dssp CBGGGCHH--HHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEE
T ss_pred eeeeCCHH--HHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeec
Confidence 77887652 232222 22 1111 00000 001111 00 0 112444444
Q ss_pred hhhcCCCCCCCcCccccCCCCc-c---------------cccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCC
Q 019674 210 PVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG 273 (337)
Q Consensus 210 ~lQaad~~~~~f~di~~l~~d~-~---------------c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G 273 (337)
.-+.- |+...++|. + +.|..|.|+..+--.-+-+.+.+|.+.|...|.+++.+.+|
T Consensus 182 ~~~~~--------D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g 253 (488)
T 3afh_A 182 NSTLE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR 253 (488)
T ss_dssp GGGSC--------CEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS
T ss_pred CCCCC--------CeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC
Confidence 43332 333333321 0 23446999988887788888999999998888899988887
Q ss_pred CCCccCCCCCCCeEeccC------CHHHHHHHHhhcCcC
Q 019674 274 ETGKMSASDPNSAIYVTD------SAKAIKNKINKYAFS 306 (337)
Q Consensus 274 ~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 306 (337)
+||||+.++. .|.+ .|+.+.+-+..--.+
T Consensus 254 --~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~lG~s 288 (488)
T 3afh_A 254 --TPLSKRHGAT--SVEHFRREGILSRALMNYLALLGWR 288 (488)
T ss_dssp --SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred --CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 8999998753 3433 578887777653333
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.22 E-value=4.2e-06 Score=86.01 Aligned_cols=192 Identities=13% Similarity=0.176 Sum_probs=114.1
Q ss_pred cCCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------
Q 019674 92 RGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF------- 163 (337)
Q Consensus 92 ~~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~------- 163 (337)
=.||| .|||||+..++ ..| +.+..|...++-|.|.. .... ...+...+..++..+|++++...
T Consensus 136 PsPTG-~LHiG~artAl-~n~l~Ar~~~G~~ilRieDtD----~~r~---~~~~~~~I~~dL~wlGl~~D~~~~~gG~~g 206 (592)
T 3al0_C 136 PSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTD----TERS---SREYEQQILESLRWCGLDWDEGPDIGGDFG 206 (592)
T ss_dssp CCSSS-CCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCC----SSSC---CHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCCCC-CccHHHHHHHH-HHHHHHHhcCCcEEEEecCcC----hhhc---cHHHHHHHHHHHHHcCCCCCCCCCcCCCCC
Confidence 45678 69999999994 555 55556777888788843 2211 23344467788889999998753
Q ss_pred EEeCccccccccHHHHHHH---HhhcC---------------H---HHHHHhhCC--------C-C-----Cccccccch
Q 019674 164 IFSDFDYVGGAFYKNMVKV---AKCVT---------------Y---NKVVGIFGF--------T-G-----EDHIGKVSF 208 (337)
Q Consensus 164 I~~~s~~~~~~~~~~~~~i---~r~~t---------------~---~~~~~~~g~--------~-~-----~~~~g~~~Y 208 (337)
+|.||+..+ .|..-+-++ +.... + .+.. ..|. . . ..-.|.+.+
T Consensus 207 p~~qSer~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~-~~g~~~~iR~k~~~~~~~~~D~v~G~~~~ 284 (592)
T 3al0_C 207 PYRQSERLE-IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYK-EKGHPVTIKFKVLPGKTSFEDLLKGYMEF 284 (592)
T ss_dssp CCBSTTCHH-HHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHH-HTTCCEEEEECCCSSCCEECCTTTCSEEC
T ss_pred CeeeeCCHH-HHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHh-hcCCCceEEEECCCCCceeeecccceeee
Confidence 577887652 222222222 11110 0 0000 1111 0 0 011244444
Q ss_pred hhhhcCCCCCCCcCccccCCCCc-c---------------cccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCC
Q 019674 209 PPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 272 (337)
Q Consensus 209 p~lQaad~~~~~f~di~~l~~d~-~---------------c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~ 272 (337)
+.-+.- |+...++|. + +.|..|.|+..+.-.-+-+.+.+|.+.|...|.+++.+.+
T Consensus 285 ~~~~~~--------D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~ 356 (592)
T 3al0_C 285 DNSTLE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSD 356 (592)
T ss_dssp CSSSSC--------CEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTT
T ss_pred ccccCC--------CeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCC
Confidence 433322 333333321 0 2345699998888888888999999889888888888888
Q ss_pred CCCCccCCCCCCCeEeccC------CHHHHHHHHhhcCcC
Q 019674 273 GETGKMSASDPNSAIYVTD------SAKAIKNKINKYAFS 306 (337)
Q Consensus 273 G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 306 (337)
| +||||+.++. .|.+ .|+.+..-+..--.+
T Consensus 357 g--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~lG~s 392 (592)
T 3al0_C 357 R--TPLSKRHGAT--SVEHFRREGILSRALMNYLALLGWR 392 (592)
T ss_dssp S--SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTTTTBC
T ss_pred C--CcccccCCcc--cHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 7 8999998753 3433 588888777653333
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.61 E-value=0.00018 Score=72.11 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=48.4
Q ss_pred cccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC------CHHHHHHHHhh
Q 019674 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 302 (337)
|..|.||..+.-.-.-+.+.+|.+.|...|.+++.+.+| +||||+.++. .|.+ .|+.+.+-+..
T Consensus 222 virG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 222 VIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred EEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 458999888887777788999998898778887777776 8999998764 3332 56666665544
No 44
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.50 E-value=0.00034 Score=70.76 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=31.3
Q ss_pred ccccCchhHH---HHHHHHh-hhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccC-----CHHHHHHHHhh
Q 019674 236 PCAIDQDPYF---RMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 302 (337)
Q Consensus 236 p~G~DQd~~~---~l~rdla-~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 302 (337)
.+|.|+...+ .....++ .-+|.+.|..+|..+|.. .|.|+|||||.+| .|.+.| .|+.++.=+.+
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 4577765511 1234455 457877787777777655 3235899999987 665433 45555554443
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.39 E-value=0.00076 Score=68.50 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=50.8
Q ss_pred EEEecCC--CCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 019674 88 LYTGRGP--SSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (337)
Q Consensus 88 vytG~~P--Tg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I 164 (337)
+.|=|.| || .|||||+-+++ ++| +.+.++...++-|.|.-.- | . ..++...+..++..+|++++ .+
T Consensus 97 v~tRFaPsPtG-~LHIGhaRtal-~n~l~Ar~~~G~~iLRieDtD~~--R-~----~~e~~~~I~edL~wLGl~wd--~~ 165 (553)
T 3aii_A 97 VVLRFAPNPSG-PLHIGHARAAI-LNHEYARKYDGRLILRIEDTDPR--R-V----DPEAYDMIPADLEWLGVEWD--ET 165 (553)
T ss_dssp CEEEECCCSSS-SCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-C----CTTHHHHHHHHHHHHTCCCS--EE
T ss_pred eEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--c-c----cHHHHHHHHHHHHHcCCCCC--CC
Confidence 4455655 47 79999999994 566 5566788888878885421 1 1 12445567788889999996 46
Q ss_pred EeCcccc
Q 019674 165 FSDFDYV 171 (337)
Q Consensus 165 ~~~s~~~ 171 (337)
+.||+..
T Consensus 166 ~~qSdr~ 172 (553)
T 3aii_A 166 VIQSDRM 172 (553)
T ss_dssp EEGGGGH
T ss_pred cccccCH
Confidence 8888876
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.30 E-value=0.0021 Score=64.94 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=39.5
Q ss_pred cccccccCchhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCC
Q 019674 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (337)
Q Consensus 233 c~vp~G~DQd~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~n 284 (337)
+.|..|.|....--.-+-|.+-+|.+.|.-.|.+++.+-+| +|+||..+.
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 35667887666655556677889999999999999988877 899999753
No 47
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.28 E-value=0.0025 Score=63.95 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=49.3
Q ss_pred EEecCCC--CCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 019674 89 YTGRGPS--SEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (337)
Q Consensus 89 ytG~~PT--g~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA~G~dp~k~~I~ 165 (337)
-+=|.|| | .|||||+..++ .+| +.+..+...++-|-|.-. .| .. ..+...+..++..+|++++.. ++
T Consensus 27 ~~RFAPSPTG-~lHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~i~~dl~wlGl~~d~~-~~ 96 (490)
T 4g6z_A 27 RTRFAPSPTG-FIHLGNIRSAL-YPWAFARKMKGTFVLRIEDTDV--ER-SS----QEAVDAILEGMAWLGLDYDEG-PY 96 (490)
T ss_dssp EEEECCCCCS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCG--GG-CC----HHHHHHHHHHHHHTTCCCSEE-EE
T ss_pred eEEeCCCCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEeCCCCc--cc-cc----HHHHHHHHHHHHHcCCCCCCC-Cc
Confidence 3455554 7 69999999984 456 555567777777777432 11 22 345557778888999999764 56
Q ss_pred eCcccc
Q 019674 166 SDFDYV 171 (337)
Q Consensus 166 ~~s~~~ 171 (337)
.||+..
T Consensus 97 ~qS~r~ 102 (490)
T 4g6z_A 97 YQMQRM 102 (490)
T ss_dssp EGGGCH
T ss_pred ccccCH
Confidence 787754
No 48
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.43 E-value=0.018 Score=57.36 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=44.4
Q ss_pred ceeE-EEecCCCCCCcchhhHHHHH----HHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHHH
Q 019674 85 KFYL-YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKD 151 (337)
Q Consensus 85 ~~~v-ytG~~PTg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i-~~~~~~~~~~ 151 (337)
.+.+ +||--|.+ .+||||+.+.+ +.++++. .|..|..+ ++|.- +...+ ..++.++ .++..+..++
T Consensus 25 ~v~~YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 25 KVKLYVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp EEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCC-CCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3444 46766777 79999987753 3444544 46666554 44433 33221 1555554 4455677778
Q ss_pred HHHcCCCCCc
Q 019674 152 IIACGFDVTK 161 (337)
Q Consensus 152 ilA~G~dp~k 161 (337)
+.++|+.++.
T Consensus 103 ~~~LgI~~d~ 112 (462)
T 3tqo_A 103 EKALRVLSPD 112 (462)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCc
Confidence 8889987643
No 49
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.62 E-value=0.14 Score=51.90 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=54.5
Q ss_pred HHHhhCCceeEEEecC--CCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH
Q 019674 78 DAYEKGEKFYLYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (337)
Q Consensus 78 ~~~~~~~~~~vytG~~--PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA 154 (337)
+.+++|+.-.+.|=|. ||| .|||||+-+++ .+| +.+.+|...++=|.|.-.- | .. .++...+..++..
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal-~n~l~Ar~~gG~fiLRieDTD~~--R-~~----~e~~~~I~edL~w 87 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSIC-LNFGIAQDYKGQCNLRFDDTNPV--K-ED----IEYVESIKNDVEW 87 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-CC----HHHHHHHHHHHHH
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECCCCch--h-cC----HHHHHHHHHHHHH
Confidence 3455654433555555 557 69999999984 456 5566788888878875421 1 22 3445567788889
Q ss_pred cCCCCCceEEEeCcccc
Q 019674 155 CGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 155 ~G~dp~k~~I~~~s~~~ 171 (337)
+|++++.. ++.||+..
T Consensus 88 LGl~wde~-~~~qSer~ 103 (553)
T 1qtq_A 88 LGFHWSGN-VRYSSDYF 103 (553)
T ss_dssp TTCCCSSS-CEEGGGGH
T ss_pred cCCCCCCC-CeehcccH
Confidence 99998543 46777765
No 50
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.30 E-value=0.024 Score=56.41 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=37.2
Q ss_pred ccccCchhHHHHHHHHhhhhCCCCcee--eecceec-CCCCCCCccCCCCCCCeEeccCC
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFP-ALQGETGKMSASDPNSAIYVTDS 292 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~p~~--l~~~~lp-~L~G~~~KMSkS~~nsaI~L~D~ 292 (337)
-+|.||..|+..-..+++.+|++.+.. ++..++. .-+|.+.|||||.+| .|++.|=
T Consensus 241 v~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~dl 299 (464)
T 3fnr_A 241 IWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSDV 299 (464)
T ss_dssp EEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHHH
T ss_pred EecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHHH
Confidence 589999999998888889999865432 2344442 224533599999987 8888663
No 51
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.06 E-value=0.46 Score=50.50 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHhhCCceeEEEec--CCCCCCcchhhHHHHHHHHh-HHhhCCceEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH
Q 019674 78 DAYEKGEKFYLYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (337)
Q Consensus 78 ~~~~~~~~~~vytG~--~PTg~slHlGh~l~~~~~~~-lQ~~~~~~v~I~IaD~~a~~~r~~~~e~i~~~~~~~~~~ilA 154 (337)
+.+++|+.-.+.|=| .||| .|||||+-+++ .+| +.+.+|..+++=|.|.-.- | . ..++...+..++..
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL-~n~l~Ar~~gG~fiLRIEDTD~~--R-~----~~e~~~~IledL~w 127 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASL-LDFNTARQYGGQFNLRMDDTNPE--L-A----RQEYVDSIADDLKW 127 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCTT--T-C----CHHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--c-c----cHHHHHHHHHHHHH
Confidence 445665543355644 4567 79999999984 456 5566788888878885311 1 2 23455577788888
Q ss_pred cCCCCCceEEEeCcccc
Q 019674 155 CGFDVTKTFIFSDFDYV 171 (337)
Q Consensus 155 ~G~dp~k~~I~~~s~~~ 171 (337)
+|++++.. ++.||+..
T Consensus 128 LGl~wde~-~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGEH-FYYASDYF 143 (851)
T ss_dssp HTCCCTTC-EEEGGGGH
T ss_pred cCCCCCCC-cccHhhhH
Confidence 99998543 56777765
No 52
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=92.75 E-value=0.2 Score=50.17 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred hhCCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc---cccc----cCCCHHH-HHHHHHHH
Q 019674 81 EKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE---KCMW----KNLSVEE-SQRLAREN 148 (337)
Q Consensus 81 ~~~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~---a~~~----r~~~~e~-i~~~~~~~ 148 (337)
++.++++|-|.+ =++| .+||||+.... ++.++++.-|..|..+-|.++ +... ...++.+ +.++..+.
T Consensus 6 ~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455677776663 4677 69999988753 333344544766666555544 2221 1256555 44555666
Q ss_pred HHHHHHcCCCCC
Q 019674 149 AKDIIACGFDVT 160 (337)
Q Consensus 149 ~~~ilA~G~dp~ 160 (337)
.+++.++|++.+
T Consensus 85 ~~~~~~lgi~~D 96 (542)
T 3u1f_A 85 KKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHTCCCS
T ss_pred HHHHHHhCCccC
Confidence 777888888764
No 53
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=90.77 E-value=0.12 Score=51.47 Aligned_cols=74 Identities=18% Similarity=0.052 Sum_probs=41.8
Q ss_pred eEEEecC--CCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Cccccc-c-----cCCCHHH-HHHHHHHHHHHHH
Q 019674 87 YLYTGRG--PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEE-SQRLARENAKDII 153 (337)
Q Consensus 87 ~vytG~~--PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~a~~-~-----r~~~~e~-i~~~~~~~~~~il 153 (337)
++.+|-- ||| .+||||+...+ .+.++++..|..|..+.+ |.|..- . ...++++ +.++.....+++.
T Consensus 7 ~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 7 FYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3445544 558 69999987753 333344445666654422 322211 0 1144544 4445566777888
Q ss_pred HcCCCCCc
Q 019674 154 ACGFDVTK 161 (337)
Q Consensus 154 A~G~dp~k 161 (337)
++|++++.
T Consensus 86 ~lgi~~d~ 93 (497)
T 2csx_A 86 FLKIEYTK 93 (497)
T ss_dssp HTTCCCSE
T ss_pred HhCCcCCC
Confidence 89998773
No 54
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=90.06 E-value=0.15 Score=50.63 Aligned_cols=55 Identities=16% Similarity=-0.007 Sum_probs=33.1
Q ss_pred ccccccCchhHHHH-HHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l-~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+..+|.||..++-+ -.-....+|.+.|. .+++.++..-+| +|||||.+| .|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHHH
Confidence 34689998873221 11122234665555 345666654355 899999987 887654
No 55
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=89.32 E-value=0.096 Score=53.58 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=35.7
Q ss_pred ccccCchhHHHHHHHHhhhhCCCCc--eeee--cceecCCCCCCCccCCCCCCCeEeccCCHHH
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~p--~~l~--~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~ 295 (337)
-.|.||..|+.....+++.+|++.+ ...| +.+|. +. ++|||||.+| .|.+.|=-++
T Consensus 352 V~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~--g~KMSKr~Gn-~v~l~dll~~ 411 (592)
T 1iq0_A 352 VVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LE--GRQMSGRKGL-AVSVDEVLEE 411 (592)
T ss_dssp EEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ET--TBCSCC-----CCBHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cC--CCcccCCCCC-ccCHHHHHHH
Confidence 4799999999988889999997542 2223 33453 34 4899999987 8877553333
No 56
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=88.87 E-value=0.24 Score=51.08 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=40.9
Q ss_pred ccccCchhHHHHHHHHhhhhCCCC-ce-eee--cceecCCCCCCCccCCCCC--CCeEeccCCHHHHHH
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHK-PA-LIE--SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKN 298 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~-p~-~l~--~~~lp~L~G~~~KMSkS~~--nsaI~L~D~p~~i~~ 298 (337)
-.|.+|+.|+.-...+++.+|++. +. ..| +.++. +. ++|||||.+ | .|.|.|=-++..+
T Consensus 382 V~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~--~~KMSkr~G~~n-~v~l~dLl~e~~~ 446 (629)
T 2zue_A 382 VIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RP--EGKFSGRKGTWV-GFTVDEVIQEAVK 446 (629)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BT--TBCCCTTTTTTT-TCBHHHHHHHHHH
T ss_pred EEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cC--CCcccCCCCCCC-eeeHHHHHHHHHH
Confidence 479999999988888889999854 22 222 34443 33 389999998 7 8888664444333
No 57
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=88.86 E-value=0.12 Score=52.37 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=42.1
Q ss_pred CCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc--cc----cCCCHHHH-HHHHHHHHH
Q 019674 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW----KNLSVEES-QRLARENAK 150 (337)
Q Consensus 83 ~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~--~~----r~~~~e~i-~~~~~~~~~ 150 (337)
++++++-+.. -|+| .+||||+...+ .+.++++..|..|..+ -.|.|.. .. ...+++++ .++.....+
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~ 103 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQ 103 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455544432 3678 69999987653 2333444335555444 4455532 11 12555553 344455566
Q ss_pred HHHHcCCCCC
Q 019674 151 DIIACGFDVT 160 (337)
Q Consensus 151 ~ilA~G~dp~ 160 (337)
++.++|+..+
T Consensus 104 ~~~~lgi~~D 113 (564)
T 3kfl_A 104 CFQEMNYDMN 113 (564)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7777888766
No 58
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=87.05 E-value=0.31 Score=51.69 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=31.5
Q ss_pred cccccCchh-HHHHHHHHhhhh-CCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~-~~~l~rdla~k~-~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||.. |+........-+ +.+.+. .+.+.++...+| +|||||.+| .|.+.|
T Consensus 548 ~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~d 604 (821)
T 1ile_A 548 IAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWD 604 (821)
T ss_dssp EEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred ccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHH
Confidence 347899863 543322222222 333333 344667766676 899999987 777643
No 59
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=86.22 E-value=0.22 Score=50.04 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=41.9
Q ss_pred CceeEEEecCC--CCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc--cc----cCCCHHHH-HHHHHHHHH
Q 019674 84 EKFYLYTGRGP--SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW----KNLSVEES-QRLARENAK 150 (337)
Q Consensus 84 ~~~~vytG~~P--Tg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~--~~----r~~~~e~i-~~~~~~~~~ 150 (337)
+++++ ||--| || .+||||+.+.+ .+.++++..|..|... -.|.|.. .. ...+++++ .++.....+
T Consensus 25 ~~~~i-~~p~pypng-~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~ 102 (536)
T 4dlp_A 25 EKYYI-TTAIAYPNG-KPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRR 102 (536)
T ss_dssp CEEEE-EECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCEEE-eCCCCCCCC-CcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34444 44444 57 69999987653 3334444457666544 3455432 11 11455553 344455666
Q ss_pred HHHHcCCCCC
Q 019674 151 DIIACGFDVT 160 (337)
Q Consensus 151 ~ilA~G~dp~ 160 (337)
++.++|+..+
T Consensus 103 ~l~~lgi~~d 112 (536)
T 4dlp_A 103 MAEVLNSSND 112 (536)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7778888776
No 60
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=85.63 E-value=2.1 Score=43.09 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=43.3
Q ss_pred CceeEEEe-cCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE-ecCcccc--cc----cCCCHHHH-HHHHHHHHHH
Q 019674 84 EKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW----KNLSVEES-QRLARENAKD 151 (337)
Q Consensus 84 ~~~~vytG-~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~-IaD~~a~--~~----r~~~~e~i-~~~~~~~~~~ 151 (337)
+++++.++ --||| .+||||+...+ .+.++++..|..|... -.|.|.. .. ...+++++ .++.....++
T Consensus 18 ~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 96 (560)
T 3h99_A 18 KKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD 96 (560)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34555444 33448 69999988753 2333444447666554 3444432 11 12555553 4445566677
Q ss_pred HHHcCCCCCc
Q 019674 152 IIACGFDVTK 161 (337)
Q Consensus 152 ilA~G~dp~k 161 (337)
+.++|++.+.
T Consensus 97 ~~~lgi~~d~ 106 (560)
T 3h99_A 97 FAGFNISYDN 106 (560)
T ss_dssp HHHTTCCCSE
T ss_pred HHHcCCCCCC
Confidence 8889998763
No 61
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=85.48 E-value=1.7 Score=45.42 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=46.9
Q ss_pred CceeEEEec-CCCCCCcchhhHHH-H---HHHHhHHhhCCceEEEEecCcc-cc--cc---c-CCCHHHH-HHHHHHHHH
Q 019674 84 EKFYLYTGR-GPSSEALHLGHLVP-F---MFTKYLQDAFKVPLVIQLTDDE-KC--MW---K-NLSVEES-QRLARENAK 150 (337)
Q Consensus 84 ~~~~vytG~-~PTg~slHlGh~l~-~---~~~~~lQ~~~~~~v~I~IaD~~-a~--~~---r-~~~~e~i-~~~~~~~~~ 150 (337)
++++|.+++ =|+| .+||||+.. . .++.++++.-|..|..+.|.++ .. .. + ..++.++ .++.....+
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357777776 4566 799999986 3 2444556666777766655444 32 11 1 2555553 344556667
Q ss_pred HHHHcCCCCCc
Q 019674 151 DIIACGFDVTK 161 (337)
Q Consensus 151 ~ilA~G~dp~k 161 (337)
++.++|++.+.
T Consensus 81 ~~~~lgis~D~ 91 (722)
T 1rqg_A 81 TFQRAKISFDF 91 (722)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCCCCC
Confidence 77788887653
No 62
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=85.26 E-value=0.27 Score=49.25 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=29.7
Q ss_pred cccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEecc
Q 019674 235 IPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVT 290 (337)
Q Consensus 235 vp~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~ 290 (337)
...|.||-.++.+ ++-++. |.+.|..+. +.++. .. |+|||||.+| .|...
T Consensus 282 ~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~~--G~KMSKSlGN-vi~p~ 335 (542)
T 3u1f_A 282 HVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-KD--RKKISKSLGN-VFDPV 335 (542)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-ET--TBCCBTTTTB-CCCHH
T ss_pred EEecccccccccchhHHHHHhh--cccccceecccccee-cC--CceeccccCC-CCChh
Confidence 3579998765433 444443 444444433 44432 34 5999999987 77653
No 63
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=85.18 E-value=1.8 Score=42.76 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=32.0
Q ss_pred cccccCchhHHH-HHHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFR-MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~-l~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
..+|.||..++- .-......+|.+.|. .+++.++.. +| +|||||.+| .|.+.|
T Consensus 254 ~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~d 308 (497)
T 2csx_A 254 HLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPYE 308 (497)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHHH
T ss_pred EEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHHH
Confidence 468999877322 211122334665554 345666654 55 899999987 887654
No 64
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=84.91 E-value=0.32 Score=49.15 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=30.5
Q ss_pred ccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.||..++-+ ++- .-++.+.|..+. +.++.. .| +|||||.+| .|++.|
T Consensus 305 ~~G~D~~~fh~~~~~a~l--~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p~d 358 (560)
T 3h99_A 305 FIGKDIVYFLSLFWPAML--EGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKAST 358 (560)
T ss_dssp EEEGGGHHHHHTHHHHHH--HHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBHHH
T ss_pred EeccccchhHHHHHHHHH--HhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCHHH
Confidence 469998874322 222 225666664433 445443 55 899999987 887654
No 65
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=83.93 E-value=0.59 Score=50.24 Aligned_cols=53 Identities=30% Similarity=0.276 Sum_probs=31.3
Q ss_pred cccccCchh-HHH--HHHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDP-YFR--MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~-~~~--l~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||.. |+. +....+ -.+..+.. .+.+.++...+| +|||||.+| .|.+.|
T Consensus 552 ~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P~d 608 (917)
T 1ffy_A 552 YLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPDQ 608 (917)
T ss_dssp EEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCHHH
T ss_pred EEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCChHH
Confidence 468999873 432 234443 23432222 344567666565 899999987 776543
No 66
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=83.89 E-value=0.26 Score=49.27 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=41.0
Q ss_pred CceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Cccccc-c-----cCCCHHH-HHHHHHHHHHH
Q 019674 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEE-SQRLARENAKD 151 (337)
Q Consensus 84 ~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~a~~-~-----r~~~~e~-i~~~~~~~~~~ 151 (337)
+.+++.|.+ -|+| .+||||+...+ .+.++++..|..|..+.+ |.|..- . ...++.+ ++++..+..++
T Consensus 12 ~~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 90 (524)
T 2x1l_A 12 EPFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRL 90 (524)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344455543 3467 69999987753 333344445766655433 322211 0 1144444 33445566667
Q ss_pred HHHcCCCCC
Q 019674 152 IIACGFDVT 160 (337)
Q Consensus 152 ilA~G~dp~ 160 (337)
+.++|++++
T Consensus 91 ~~~lgi~~d 99 (524)
T 2x1l_A 91 QEKLNISFD 99 (524)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCcCC
Confidence 778888765
No 67
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=81.82 E-value=3 Score=41.06 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=41.0
Q ss_pred eEEEecCC--CCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Cccccc-c-----cCCCHHHH-HHHHHHHHHHHH
Q 019674 87 YLYTGRGP--SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEES-QRLARENAKDII 153 (337)
Q Consensus 87 ~vytG~~P--Tg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~a~~-~-----r~~~~e~i-~~~~~~~~~~il 153 (337)
++.||--| +| .+||||+...+ .+.++++..|..|..+.+ |.|..- . ...++.++ .++.....+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555555 67 69999988653 333344445766655433 322210 0 11444443 334456667788
Q ss_pred HcCCCCC
Q 019674 154 ACGFDVT 160 (337)
Q Consensus 154 A~G~dp~ 160 (337)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 68
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=81.57 E-value=4.8 Score=40.24 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=41.9
Q ss_pred eeEE-EecCCCCCCcchhhHHHHH----HHHhHHhhCCceEEEE--ecCc---------c--ccccc----CCCHHH-HH
Q 019674 86 FYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD---------E--KCMWK----NLSVEE-SQ 142 (337)
Q Consensus 86 ~~vy-tG~~PTg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~--IaD~---------~--a~~~r----~~~~e~-i~ 142 (337)
+.+| ||-=|.+ .+||||+.+.+ +.+|++-. |..|..+ |+|. | +...+ ..++.+ ..
T Consensus 43 v~~YvcgPTvYg-~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 43 VKVYACGPTVYN-YAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp EEEEECCCBCSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred ceEEeCCCcCCC-CcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 3344 4544447 69999987653 44445443 6666554 5554 2 33322 155555 44
Q ss_pred HHHHHHHHHHHHcCCCCCce
Q 019674 143 RLARENAKDIIACGFDVTKT 162 (337)
Q Consensus 143 ~~~~~~~~~ilA~G~dp~k~ 162 (337)
++.....+++.++|+.++..
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~~ 140 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPDK 140 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCSE
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 55567778888899987653
No 69
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=81.01 E-value=0.63 Score=45.30 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=40.4
Q ss_pred EEEecCCCCCCcchhhHHHHH----HHHhHHhhCCceEEEE-ecCccc--ccc----cCCCHHHH-HHHHHHHHHHHHHc
Q 019674 88 LYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEK--CMW----KNLSVEES-QRLARENAKDIIAC 155 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~-IaD~~a--~~~----r~~~~e~i-~~~~~~~~~~ilA~ 155 (337)
..||-=|.| .+||||+.+.+ +.+++.. .|..|..+ -.|++. ... ...++.++ .++.....+++.++
T Consensus 43 y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~-~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~L 120 (414)
T 3c8z_A 43 YVCGITPYD-ATHLGHAATYLTFDLVHRLWLD-AGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAAL 120 (414)
T ss_dssp EECCCCTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCcCCC-CcCccccHHHHHHHHHHHHHHH-cCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345555557 69999987653 3444444 46665443 344442 221 11455443 34455666778889
Q ss_pred CCC-CC
Q 019674 156 GFD-VT 160 (337)
Q Consensus 156 G~d-p~ 160 (337)
|+. ++
T Consensus 121 gi~~~d 126 (414)
T 3c8z_A 121 RVLPPH 126 (414)
T ss_dssp TCCCCS
T ss_pred CCCCCc
Confidence 997 53
No 70
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=80.56 E-value=4 Score=41.13 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=32.4
Q ss_pred cccccCchhHHHH---HHHHhhhhCCCCceeee-cceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l---~rdla~k~~~~~p~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||..++.+ ++=.+ +|.+.|..+. +.++ ...| +|||||.+| .|++.|
T Consensus 298 ~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 298 HVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPVE 352 (564)
T ss_dssp EEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHHH
T ss_pred EEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHHH
Confidence 4689999885332 22222 4555554443 6666 4555 899999987 887654
No 71
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=80.19 E-value=4.8 Score=40.19 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=21.8
Q ss_pred ccccccCchhHHHH---HHHHhhhhCCCCceee-ecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 234 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 234 ~vp~G~DQd~~~~l---~rdla~k~~~~~p~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+...|.||..++-+ ++=.+ +|.+.|..+ .+.++. +.| +|||||.+| .|++.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence 34689999884221 33333 455545443 356664 455 899999987 887654
No 72
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=80.11 E-value=0.69 Score=45.74 Aligned_cols=72 Identities=25% Similarity=0.239 Sum_probs=41.5
Q ss_pred eeEE-EecCCCCCCcchhhHHHHH----HHHhHHhhCCceEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHHHH
Q 019674 86 FYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAKDI 152 (337)
Q Consensus 86 ~~vy-tG~~PTg~slHlGh~l~~~----~~~~lQ~~~~~~v~I~--IaD~~-a~~~r----~~~~e~i~-~~~~~~~~~i 152 (337)
+.+| ||--|.+ .+||||+-+.+ +.++++.. |..|..+ ++|.- +...+ ..++.++. ++..+..+++
T Consensus 23 v~~yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~-G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 23 VGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFL-GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHH-TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCC-CCcccccHHHHHHHHHHHHHHHc-CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4444 4433447 69999987653 44445444 6565554 56654 22211 25666544 3445666778
Q ss_pred HHcCCCC
Q 019674 153 IACGFDV 159 (337)
Q Consensus 153 lA~G~dp 159 (337)
.++|+.+
T Consensus 101 ~~LgI~~ 107 (461)
T 1li5_A 101 DALNILR 107 (461)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 8899875
No 73
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=78.65 E-value=1.1 Score=47.85 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=31.0
Q ss_pred cccccCchhHHHHHHHHhhh--hCCCCc--eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l~rdla~k--~~~~~p--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||... =.+|-++.- +....| ..+.+.++...+| +|||||.+| .|...|
T Consensus 485 ~v~G~Dii~~-W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d 541 (862)
T 1gax_A 485 LVTGYDILFL-WVSRMEVSGYHFMGERPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE 541 (862)
T ss_dssp EEEEGGGTTT-THHHHHHHHHHHSSSCSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred EecCcccccc-HHHHHHHHHHHhcCCCcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence 4578887652 123333322 222234 2344677777776 899999987 776543
No 74
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=78.32 E-value=4.7 Score=39.00 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=18.6
Q ss_pred cccccCchh-HHHHHHHHhhh-hCCCCce-e-eecceecCCCCCCCccCCCCCCCeEecc
Q 019674 235 IPCAIDQDP-YFRMTRDVAPR-IGYHKPA-L-IESSFFPALQGETGKMSASDPNSAIYVT 290 (337)
Q Consensus 235 vp~G~DQd~-~~~l~rdla~k-~~~~~p~-~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 290 (337)
..+|.|+-. |+..-.-...- .+.+++. . +|..+|. +.| +|||||.+| .|++.
T Consensus 248 ~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~~ 303 (414)
T 3c8z_A 248 QGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLVS 303 (414)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHH
T ss_pred EEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCHH
Confidence 357888766 44443222222 2553333 2 3334544 455 899999987 88764
No 75
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=78.01 E-value=6.2 Score=39.11 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=30.5
Q ss_pred cccccCchhHHHH-HHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~~~l-~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
..+|.||-.++-+ -.-.+..+|.+.|. .+.+.++.. +| +|||||.+| .|.+.|
T Consensus 269 ~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p~d 323 (524)
T 2x1l_A 269 HMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDPVN 323 (524)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCHHH
T ss_pred EEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCHHH
Confidence 4589998754322 11122234655443 333455544 44 899999987 887654
No 76
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=77.95 E-value=6.3 Score=42.10 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=46.5
Q ss_pred hCCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Cccccc------ccCCCHHH-HHHHHHHHH
Q 019674 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM------WKNLSVEE-SQRLARENA 149 (337)
Q Consensus 82 ~~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~a~~------~r~~~~e~-i~~~~~~~~ 149 (337)
.++++++++++ -||| .|||||..... .+.++++.-|..|....| |.|..- ....++.+ ..++.....
T Consensus 51 ~~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~ 129 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMK 129 (880)
T ss_dssp TSCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34678888887 4556 69999988753 334455555776655433 333321 01244443 334455566
Q ss_pred HHHHHcCCCCC
Q 019674 150 KDIIACGFDVT 160 (337)
Q Consensus 150 ~~ilA~G~dp~ 160 (337)
+++.++|+..+
T Consensus 130 ~~l~~LGis~D 140 (880)
T 4arc_A 130 NQLKMLGFGYD 140 (880)
T ss_dssp HHHHHTTCCCC
T ss_pred HHHHHhCCCcC
Confidence 77788898776
No 77
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=75.24 E-value=4.6 Score=39.79 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=28.8
Q ss_pred ccccCch-hHHHH--HHHHhhhhCCCCcee-eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 236 PCAIDQD-PYFRM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 236 p~G~DQd-~~~~l--~rdla~k~~~~~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
.+|.|+. +|+.. +.-.+- +|.+.|.. +|+.++.. .| +|||||.+| .|.+.|
T Consensus 225 ~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~~d 279 (461)
T 1li5_A 225 GGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTVRD 279 (461)
T ss_dssp ECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBHHH
T ss_pred eccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccChhH
Confidence 4677754 34332 322221 45544433 44455543 44 899999987 887654
No 78
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=71.05 E-value=1.8 Score=45.66 Aligned_cols=53 Identities=23% Similarity=0.152 Sum_probs=28.3
Q ss_pred cccccCchh-HHHHHHHHhhh-hCC-CCc-eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~-~~~l~rdla~k-~~~-~~p-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
..+|.||-. |+...+-...- ++. +-| ..+++.++.. .| +|||||.+| .|.+.|
T Consensus 607 ~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d 663 (810)
T 1wkb_A 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFID 663 (810)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHHH
T ss_pred EeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHHH
Confidence 358999865 32222211111 121 122 3344555543 44 899999987 887654
No 79
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=70.73 E-value=2.2 Score=46.05 Aligned_cols=53 Identities=23% Similarity=0.157 Sum_probs=28.1
Q ss_pred cccccCchhH-HHHHHHHhhh-hCC-CCc-eeeecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 235 IPCAIDQDPY-FRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 235 vp~G~DQd~~-~~l~rdla~k-~~~-~~p-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
...|.||-.. +...+-...- ++. +-| ..+++.++.. +| +|||||.+| .|.+.|
T Consensus 607 ~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d 663 (967)
T 1wz2_A 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFID 663 (967)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBHHH
T ss_pred EeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCHHH
Confidence 4589998542 2222111111 221 112 2344555554 54 899999987 777643
No 80
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=67.82 E-value=8.6 Score=41.03 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Cccccc-c-----cCCCHHH-HHHHHHHHHH
Q 019674 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEE-SQRLARENAK 150 (337)
Q Consensus 83 ~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~a~~-~-----r~~~~e~-i~~~~~~~~~ 150 (337)
++++++++|+ =|+| .|||||..... ++.++++.-|..|....| |.|..- . ...++.+ ..++.....+
T Consensus 32 ~~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 32 RGKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp --EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3568888885 3346 79999988753 333344444666655433 333321 0 1234433 3445556667
Q ss_pred HHHHcCCCCC
Q 019674 151 DIIACGFDVT 160 (337)
Q Consensus 151 ~ilA~G~dp~ 160 (337)
++.++|+..+
T Consensus 111 ~~~~LGi~~D 120 (878)
T 2v0c_A 111 SLRLMGILYD 120 (878)
T ss_dssp HHHHTTCCCC
T ss_pred HHHHhCCccC
Confidence 7778887654
No 81
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=67.13 E-value=2 Score=44.03 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=39.5
Q ss_pred ccccCchhHHHHHHHHhhhhCCCCce-eeecceecCCCCCCCccCCCCCCCeEeccCCHHHH
Q 019674 236 PCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296 (337)
Q Consensus 236 p~G~DQd~~~~l~rdla~k~~~~~p~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i 296 (337)
-+|.||+.|+.-...+++.+|++.+. ..|..+ ++- .||||+.+| .|.|.|=-+++
T Consensus 370 V~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde~ 425 (607)
T 1f7u_A 370 VIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEET 425 (607)
T ss_dssp ECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHHH
T ss_pred EEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHHH
Confidence 48999999999888899999986543 334444 222 379999987 88887644433
No 82
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=62.70 E-value=10 Score=40.44 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=30.9
Q ss_pred hCCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEecCcc
Q 019674 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (337)
Q Consensus 82 ~~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~IaD~~ 129 (337)
.++++++++|. =||| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 32 ~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp CSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred CCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 34678888875 3467 79999998652 344456655777766655444
No 83
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=62.18 E-value=1.5 Score=45.72 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=20.2
Q ss_pred CCcee-eecceecCCCCCCCccCCCCCCCeEeccC
Q 019674 258 HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (337)
Q Consensus 258 ~~p~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 291 (337)
+.|.. +++.++.. .| +|||||.+| .|+..|
T Consensus 327 ~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d 357 (722)
T 1rqg_A 327 NLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHE 357 (722)
T ss_dssp CCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHH
T ss_pred CCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHH
Confidence 44543 34556554 55 899999987 888754
No 84
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=58.65 E-value=5.3 Score=42.19 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=30.5
Q ss_pred hCCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEEec-Cccc
Q 019674 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEK 130 (337)
Q Consensus 82 ~~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~Ia-D~~a 130 (337)
.+++++++.|. =||| .|||||..... ++.++++.-|..|....| |-|+
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~G 88 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCC
Confidence 45678888888 6777 69999998753 333455554655544434 4443
No 85
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=58.20 E-value=7.5 Score=39.45 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.6
Q ss_pred eeEEEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCc
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDD 128 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~ 128 (337)
+.-|+|--|++ .|||||+-..+ .+.++.+..|..|+-. |+|+
T Consensus 106 ~ve~~spn~~~-~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNK-ELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCC-CCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 34477888888 59999987653 3334445557777654 7887
No 86
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=55.84 E-value=3.4 Score=41.37 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=7.6
Q ss_pred eeecceecCCCCCCCccCCCCCCCeEec
Q 019674 262 LIESSFFPALQGETGKMSASDPNSAIYV 289 (337)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L 289 (337)
.+|+.+|. +.| +|||||.+| .|.+
T Consensus 287 w~H~g~v~-~~G--~KMSKSlGN-~it~ 310 (501)
T 3sp1_A 287 FVHGEFLI-MDY--NKMSKSRGN-FITV 310 (501)
T ss_dssp EEEECCEE-CC-------------CCCH
T ss_pred EEEeeeEe-eCC--eEccccCCC-cCCH
Confidence 44546664 455 899999987 6655
No 87
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=55.76 E-value=10 Score=38.76 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=26.7
Q ss_pred EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCc
Q 019674 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDD 128 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~ 128 (337)
|+|-=|++ .|||||+-+.+ .+..+.+..|..|+-. |+||
T Consensus 149 ~~spN~~~-plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAK-PFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTS-CCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCC-CCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 67888888 59999998654 3333444457666554 8885
No 88
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=53.85 E-value=3.5 Score=43.98 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=11.9
Q ss_pred CccCCCCCCCeEeccC
Q 019674 276 GKMSASDPNSAIYVTD 291 (337)
Q Consensus 276 ~KMSkS~~nsaI~L~D 291 (337)
+|||||.+| .|...|
T Consensus 636 ~KMSKSkGN-vVdP~d 650 (878)
T 2v0c_A 636 AVMSKSKGN-GVMVGP 650 (878)
T ss_dssp EECSGGGTC-CCBHHH
T ss_pred HHhhccCCC-cccHHH
Confidence 699999987 776543
No 89
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=53.19 E-value=11 Score=38.64 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.5
Q ss_pred EEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCc
Q 019674 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDD 128 (337)
Q Consensus 89 ytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~ 128 (337)
|+|--|++ .|||||+-..+ .+.++.+..|..|+.. |+||
T Consensus 125 ~~spN~~~-~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTK-PLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 78888998 59999987653 3333444457777664 8887
No 90
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=52.67 E-value=1.1e+02 Score=27.75 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=59.9
Q ss_pred hhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCccc-ccc--cCCCHHHHHHHH--------HHHH
Q 019674 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK-CMW--KNLSVEESQRLA--------RENA 149 (337)
Q Consensus 81 ~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a-~~~--r~~~~e~i~~~~--------~~~~ 149 (337)
++|+. ++.|+-|-. +-|=+.++-. ++.|.+..|+ .|.|+++|-+. .+- ...+..+.++.+ +.+.
T Consensus 27 ~~g~H--allGISpgN-syFs~d~L~~-Li~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ 101 (257)
T 3oqi_A 27 KRRRH--VLVGISPFN-SRFSEDYIHR-LIAWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAE 101 (257)
T ss_dssp HHTCE--EEEEECTTS-TTCCHHHHHH-HHHHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCe--EEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 56664 899999985 7888888877 7889988875 57778899763 322 235555444333 2333
Q ss_pred HHHHHcCCCCCceEEEeCccccccccHHHHH
Q 019674 150 KDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (337)
Q Consensus 150 ~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~ 180 (337)
..+.++|.+.+ -|..=|++..+..|.++.
T Consensus 102 ral~~~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 102 KALEAHGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred HHHHHcCCCcc--cceeHHHhhcCHHHHHHH
Confidence 44556788776 354446666666665543
No 91
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=49.37 E-value=4.3 Score=40.08 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=10.9
Q ss_pred ccccCCC--CcccccccccCchhHH
Q 019674 223 HLFSGKD--HLRCLIPCAIDQDPYF 245 (337)
Q Consensus 223 di~~l~~--d~~c~vp~G~DQd~~~ 245 (337)
|++.+.. -.+|+||+|+|||||.
T Consensus 223 Dil~~~~d~~~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 223 PVYSTYFDGLPFTRVPLPVGTGNED 247 (451)
T ss_dssp GGSGGGGTTSGGGCCBCC-------
T ss_pred HHHHhhcCCCCccccccccccccch
Confidence 6654433 2589999999999994
No 92
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=46.61 E-value=8.9 Score=40.96 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=10.8
Q ss_pred ccCCCCCCCeEeccC
Q 019674 277 KMSASDPNSAIYVTD 291 (337)
Q Consensus 277 KMSkS~~nsaI~L~D 291 (337)
|||||.+| .|...|
T Consensus 639 KMSKSkGN-vVdP~d 652 (880)
T 4arc_A 639 KMSKSKNN-GIDPQV 652 (880)
T ss_dssp ECCTTTTC-CCCHHH
T ss_pred cccCcCCC-CCCHHH
Confidence 99999988 665543
No 93
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=46.56 E-value=12 Score=40.07 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=27.4
Q ss_pred hCCceeEEEec-CCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE
Q 019674 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (337)
Q Consensus 82 ~~~~~~vytG~-~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~ 124 (337)
.++++++.+|. =||| .|||||.+... ++.++++.-|..|...
T Consensus 46 ~~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~ 91 (917)
T 1ffy_A 46 GNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAPYV 91 (917)
T ss_dssp TSCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred CCCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 34678888887 4567 69999998653 3344555546555443
No 94
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=45.37 E-value=20 Score=35.33 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEecCCCCCCcchhhHHHHH---HHHhHHhhCCceEEEE--ecCccc
Q 019674 88 LYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDEK 130 (337)
Q Consensus 88 vytG~~PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~--IaD~~a 130 (337)
=|+.--||| .||+||+-... .+..+.+..|..|+-. |+||=.
T Consensus 35 E~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 35 EYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp ECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred EeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 367888998 59999987654 2344445557666543 777643
No 95
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=27.49 E-value=1.8e+02 Score=23.05 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcccccccC-CCHHHHH
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQ 142 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~a~~~r~-~~~e~i~ 142 (337)
..++.|.- +.+|+||+--+..+ .+.++..+++.-.|+++ +. .+.++-.
T Consensus 3 i~i~~GsF---DpvH~GH~~l~~~a---~~~~d~v~v~~~~~p~k---~~~~~~~~R~ 51 (158)
T 1qjc_A 3 RAIYPGTF---DPITNGHIDIVTRA---TQMFDHVILAIAASPSK---KPMFTLEERV 51 (158)
T ss_dssp EEEEEECC---TTCCHHHHHHHHHH---HTTSSEEEEEEESCCSS---CCSSCHHHHH
T ss_pred EEEEEecC---CCCCHHHHHHHHHH---HHhCCEEEEEECCCCCC---CCCCCHHHHH
Confidence 34566643 45999997655333 22234334444557765 23 4555433
No 96
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=27.26 E-value=34 Score=35.85 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=24.7
Q ss_pred CCceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEEE
Q 019674 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (337)
Q Consensus 83 ~~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I~ 124 (337)
++++++.+|.- ||| .|||||+.... .+.++++.-|..|...
T Consensus 33 ~~~~~i~~~~Py~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 33 EKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp GGEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred CCcEEEEeCCCCCCC-CCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 35566666653 356 69999998753 3333444446666554
No 97
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=24.57 E-value=2.1e+02 Score=25.72 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=64.3
Q ss_pred hhCCceeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecCcc-ccccc--CCCHHHHHHHH--------HHHH
Q 019674 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWK--NLSVEESQRLA--------RENA 149 (337)
Q Consensus 81 ~~~~~~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD~~-a~~~r--~~~~e~i~~~~--------~~~~ 149 (337)
++|+ .++.|+-|-. +-|=+..+-. ++.|.+..|+ .+.|+++|-+ +.+-. ..+..+.++.+ +.+.
T Consensus 27 ~~g~--HallGVSpgN-syFs~drl~~-li~Wa~~~F~-~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ 101 (247)
T 3oqv_A 27 QRGE--HALIGISAGN-SYFSQKNTVM-LLQWAGQRFE-RTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLR 101 (247)
T ss_dssp -CEE--EEEEEEESSC-TTCCHHHHHH-HHHHHHHHEE-EEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC--eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 4444 4899999985 7888888877 7889888765 5677789996 33221 34554433333 2333
Q ss_pred HHHHHcCCCCCceEEEeCccccccccHHHHHH-HHhhcC
Q 019674 150 KDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVT 187 (337)
Q Consensus 150 ~~ilA~G~dp~k~~I~~~s~~~~~~~~~~~~~-i~r~~t 187 (337)
..|.++|.+.+..-|..=|++..+..|.++.. +.+.+.
T Consensus 102 ral~~~~~~~~~~rv~~~Sd~~~~~~Y~~l~~~ve~a~~ 140 (247)
T 3oqv_A 102 RSLESVGDHAERFRVRSLSELQETPEYRAVRERTDRAFE 140 (247)
T ss_dssp HHHHHHCTTGGGEEEEEHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccCceeeeHHHhhCCHHHHHHHHHHHHHHh
Confidence 45556888887766665566766666666543 444433
No 98
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=23.48 E-value=44 Score=35.86 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=25.4
Q ss_pred CceeEEEecC-CCCCCcchhhHHHHH---HHHhHHhhCCceEEE
Q 019674 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (337)
Q Consensus 84 ~~~~vytG~~-PTg~slHlGh~l~~~---~~~~lQ~~~~~~v~I 123 (337)
++++++.|.= ||| .||+||.+... ++.++++.-|..|.-
T Consensus 34 ~kf~i~~~pPy~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~ 76 (967)
T 1wz2_A 34 KKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLF 76 (967)
T ss_dssp GCCBEEECCCBCSS-CCBHHHHHHHHHHHHHHHHHHHTTCCCBC
T ss_pred CcEEEEeCCCCCCC-CcchhhhHHHHHHHHHHHHHHcCCCccCC
Confidence 5788888874 456 79999998653 334455554555433
No 99
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=20.95 E-value=2.8e+02 Score=22.70 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=26.7
Q ss_pred eeEEEecCCCCCCcchhhHHHHHHHHhHHhhCCceEEEEecC-cccccccC-CCHHHHHHHH
Q 019674 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DEKCMWKN-LSVEESQRLA 145 (337)
Q Consensus 86 ~~vytG~~PTg~slHlGh~l~~~~~~~lQ~~~~~~v~I~IaD-~~a~~~r~-~~~e~i~~~~ 145 (337)
..+|.|.- +.+|.||+--+...+ +.++ .+++.++. +++ ++ .+.++-.+..
T Consensus 4 i~i~~GsF---DPiH~GHl~ii~~A~---~~~D-~viv~v~~~~~K---~~~~~~~eR~~ml 55 (157)
T 3nv7_A 4 VGIYPGTF---DPVTNGHIDIIHRSS---ELFE-KLIVAVAHSSAK---NPMFSLDERLKMI 55 (157)
T ss_dssp EEEEEECC---TTCCHHHHHHHHHHH---TTSS-EEEEEEECCGGG---CCSSCHHHHHHHH
T ss_pred EEEEEEEc---CCCCHHHHHHHHHHH---HhCC-ceEEEEccCCCC---CCCCCHHHHHHHH
Confidence 34566633 469999976654333 2234 34444444 444 33 6666655433
No 100
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=20.28 E-value=99 Score=28.25 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhhhCCCCceeeecceecCCCCCCCccCCCCCCCeEeccCCHHHHHHHHhhcCcC
Q 019674 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306 (337)
Q Consensus 242 d~~~~l~rdla~k~~~~~p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t 306 (337)
.|-..+-|.+++.+|++ ...+-.+.+..-+| ..||++ .+||+++..+..-.|-+ |.+
T Consensus 151 ~qq~~~l~~~~~dl~~~-v~iv~vp~vr~~dG--laiSSr----n~yLs~~er~~A~~l~~-~L~ 207 (280)
T 2ejc_A 151 AQQFRVLRRMVRDLNMD-VEMIECPIVREPDG--LAMSSR----NVYLSPEERQQALSLYQ-SLK 207 (280)
T ss_dssp HHHHHHHHHHHHHTTCC-CEEEEECCCBCTTS--CBCCGG----GGGCCHHHHHHTHHHHH-HHH
T ss_pred CcCHHHHHHHHHHcCCe-EEEEeeCcEEcCCC--CEeccC----cccCCHHHHHHHHHHHH-HHH
Confidence 66677788999998873 22222444443344 799988 57888877666666655 554
Done!