Query 019675
Match_columns 337
No_of_seqs 48 out of 50
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 03:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09755 DUF2046: Uncharacteri 93.6 0.96 2.1E-05 44.7 11.4 80 186-268 25-110 (310)
2 PF05769 DUF837: Protein of un 92.3 2.2 4.7E-05 38.7 11.0 97 172-290 5-107 (181)
3 TIGR02449 conserved hypothetic 90.3 0.86 1.9E-05 35.9 5.6 45 196-256 1-45 (65)
4 PF14197 Cep57_CLD_2: Centroso 89.5 3.5 7.6E-05 32.4 8.5 65 193-266 3-67 (69)
5 TIGR00219 mreC rod shape-deter 88.5 0.75 1.6E-05 43.7 4.9 45 211-274 68-112 (283)
6 KOG0977 Nuclear envelope prote 86.7 7.2 0.00016 41.2 11.2 104 189-294 142-269 (546)
7 PF01166 TSC22: TSC-22/dip/bun 85.8 0.75 1.6E-05 36.0 2.7 33 193-225 12-44 (59)
8 PF09726 Macoilin: Transmembra 82.1 28 0.00061 37.6 13.3 102 187-294 544-663 (697)
9 PRK13922 rod shape-determining 81.2 20 0.00043 33.1 10.5 80 176-275 36-115 (276)
10 KOG4797 Transcriptional regula 80.6 9.9 0.00022 33.4 7.7 53 170-226 44-98 (123)
11 smart00340 HALZ homeobox assoc 75.4 3.3 7.1E-05 30.9 2.9 23 201-223 4-26 (44)
12 PF05377 FlaC_arch: Flagella a 74.3 9.8 0.00021 29.4 5.3 48 243-290 4-51 (55)
13 PF10226 DUF2216: Uncharacteri 72.6 47 0.001 31.4 10.3 81 185-272 45-141 (195)
14 COG1792 MreC Cell shape-determ 71.3 9.2 0.0002 36.6 5.6 31 194-224 75-105 (284)
15 PF15035 Rootletin: Ciliary ro 71.3 20 0.00044 32.6 7.5 23 201-223 66-88 (182)
16 PF06156 DUF972: Protein of un 71.0 15 0.00033 31.0 6.2 31 240-270 23-53 (107)
17 cd07429 Cby_like Chibby, a nuc 70.0 7.1 0.00015 33.5 4.1 18 205-222 75-92 (108)
18 PF04849 HAP1_N: HAP1 N-termin 69.0 27 0.00058 34.7 8.4 104 185-288 164-290 (306)
19 PF10224 DUF2205: Predicted co 68.2 18 0.00038 29.6 5.8 38 186-223 21-58 (80)
20 TIGR03752 conj_TIGR03752 integ 67.5 31 0.00067 36.2 8.8 68 193-269 64-132 (472)
21 PF08614 ATG16: Autophagy prot 65.7 46 0.001 29.7 8.5 63 192-258 113-177 (194)
22 KOG0963 Transcription factor/C 64.8 49 0.0011 35.9 9.8 89 192-280 232-323 (629)
23 PF08232 Striatin: Striatin fa 63.9 77 0.0017 27.4 9.3 43 185-227 29-71 (134)
24 PF02183 HALZ: Homeobox associ 63.3 18 0.0004 26.4 4.6 37 233-269 6-42 (45)
25 PF06005 DUF904: Protein of un 61.5 35 0.00077 27.1 6.3 47 197-266 6-52 (72)
26 KOG4005 Transcription factor X 60.6 67 0.0015 31.8 9.2 44 201-253 89-132 (292)
27 PF10224 DUF2205: Predicted co 60.3 19 0.00041 29.4 4.7 32 239-270 30-61 (80)
28 PF08614 ATG16: Autophagy prot 60.2 75 0.0016 28.4 8.9 44 178-221 131-177 (194)
29 PF00261 Tropomyosin: Tropomyo 59.9 1.1E+02 0.0025 28.1 10.2 54 172-225 97-150 (237)
30 KOG1086 Cytosolic sorting prot 59.1 63 0.0014 34.5 9.2 80 223-306 234-317 (594)
31 PF12808 Mto2_bdg: Micro-tubul 57.9 9.2 0.0002 29.1 2.3 23 202-224 22-44 (52)
32 PF04111 APG6: Autophagy prote 57.8 1.4E+02 0.0031 29.0 10.9 63 193-271 48-111 (314)
33 COG2919 Septum formation initi 57.4 44 0.00095 28.1 6.6 35 190-224 52-86 (117)
34 PF08537 NBP1: Fungal Nap bind 57.3 16 0.00035 36.6 4.6 29 188-216 189-217 (323)
35 PRK00888 ftsB cell division pr 57.2 20 0.00043 29.8 4.4 32 193-224 32-63 (105)
36 PF08172 CASP_C: CASP C termin 55.9 49 0.0011 31.5 7.3 52 199-266 83-134 (248)
37 PF12022 DUF3510: Domain of un 55.7 15 0.00033 31.1 3.6 30 212-241 87-121 (125)
38 PRK10884 SH3 domain-containing 55.5 1.2E+02 0.0026 28.2 9.6 16 193-208 98-113 (206)
39 TIGR00219 mreC rod shape-deter 54.2 20 0.00044 34.2 4.5 31 193-223 71-105 (283)
40 TIGR02449 conserved hypothetic 54.0 88 0.0019 24.8 7.3 53 185-246 4-56 (65)
41 PF13851 GAS: Growth-arrest sp 53.9 1.5E+02 0.0033 27.1 9.9 40 188-227 93-132 (201)
42 KOG3119 Basic region leucine z 52.9 64 0.0014 30.8 7.6 52 167-226 188-239 (269)
43 PRK13169 DNA replication intia 52.1 23 0.00049 30.4 4.0 31 240-270 23-53 (110)
44 PF10174 Cast: RIM-binding pro 51.6 1.4E+02 0.003 33.2 10.7 105 172-277 37-145 (775)
45 PRK13169 DNA replication intia 50.2 65 0.0014 27.6 6.5 39 185-223 12-50 (110)
46 PRK09039 hypothetical protein; 50.2 90 0.002 30.7 8.3 66 173-247 122-187 (343)
47 PF00170 bZIP_1: bZIP transcri 49.9 58 0.0013 24.2 5.5 20 203-222 27-46 (64)
48 PF02403 Seryl_tRNA_N: Seryl-t 49.4 42 0.00092 26.9 5.0 43 178-220 55-99 (108)
49 PF14662 CCDC155: Coiled-coil 49.3 40 0.00087 31.7 5.5 52 212-272 11-62 (193)
50 PF06005 DUF904: Protein of un 49.1 44 0.00096 26.5 5.0 35 190-224 20-54 (72)
51 PF00038 Filament: Intermediat 49.1 2.2E+02 0.0048 26.4 11.4 60 200-264 228-287 (312)
52 PRK10884 SH3 domain-containing 48.3 2E+02 0.0044 26.7 9.9 16 206-221 129-144 (206)
53 PF00769 ERM: Ezrin/radixin/mo 47.5 2.5E+02 0.0054 26.5 12.8 79 189-269 34-112 (246)
54 PF08317 Spc7: Spc7 kinetochor 47.3 2.7E+02 0.0059 26.9 12.7 56 240-295 238-300 (325)
55 TIGR03495 phage_LysB phage lys 46.9 1.2E+02 0.0025 27.0 7.7 46 192-240 65-110 (135)
56 PF01166 TSC22: TSC-22/dip/bun 46.2 12 0.00026 29.5 1.4 33 241-273 16-48 (59)
57 COG5185 HEC1 Protein involved 46.0 1.9E+02 0.004 31.3 10.2 102 182-290 289-419 (622)
58 KOG2129 Uncharacterized conser 45.0 39 0.00084 35.7 5.1 74 189-265 51-130 (552)
59 PF07926 TPR_MLP1_2: TPR/MLP1/ 44.4 1.1E+02 0.0024 25.9 7.0 50 174-223 76-126 (132)
60 KOG4797 Transcriptional regula 43.2 33 0.00072 30.3 3.7 52 194-274 51-102 (123)
61 PRK13922 rod shape-determining 42.9 41 0.00088 31.1 4.5 11 213-223 97-107 (276)
62 TIGR02894 DNA_bind_RsfA transc 42.4 59 0.0013 29.9 5.4 32 239-270 118-149 (161)
63 PF05769 DUF837: Protein of un 41.2 20 0.00043 32.6 2.2 22 203-224 154-175 (181)
64 PRK13729 conjugal transfer pil 41.1 81 0.0017 33.2 6.7 41 183-223 78-118 (475)
65 PF10186 Atg14: UV radiation r 40.9 2.7E+02 0.0059 25.0 12.9 29 196-224 57-85 (302)
66 KOG0977 Nuclear envelope prote 40.6 2.7E+02 0.0059 30.0 10.5 111 172-282 90-212 (546)
67 KOG4378 Nuclear protein COP1 [ 40.1 67 0.0015 34.7 6.1 47 178-224 623-672 (673)
68 PF09311 Rab5-bind: Rabaptin-l 39.0 16 0.00035 32.6 1.2 40 237-276 13-52 (181)
69 PF10168 Nup88: Nuclear pore c 38.9 3.7E+02 0.0081 29.4 11.5 107 176-289 553-661 (717)
70 PF06818 Fez1: Fez1; InterPro 38.8 3.2E+02 0.0069 25.9 9.7 79 188-266 66-169 (202)
71 KOG4571 Activating transcripti 38.6 2.4E+02 0.0052 28.3 9.2 27 199-225 245-271 (294)
72 PF11365 DUF3166: Protein of u 38.4 60 0.0013 27.4 4.5 31 193-223 6-36 (96)
73 PF13851 GAS: Growth-arrest sp 38.4 2.9E+02 0.0063 25.3 9.2 66 190-257 29-94 (201)
74 PF03962 Mnd1: Mnd1 family; I 38.2 2.6E+02 0.0055 25.5 8.8 59 193-261 67-125 (188)
75 PF04849 HAP1_N: HAP1 N-termin 37.6 2.4E+02 0.0051 28.3 9.1 70 202-271 160-246 (306)
76 KOG4674 Uncharacterized conser 36.0 1.3E+02 0.0029 36.4 8.1 79 201-280 1105-1194(1822)
77 KOG0980 Actin-binding protein 35.5 3.3E+02 0.0071 31.3 10.5 107 174-286 325-450 (980)
78 KOG4378 Nuclear protein COP1 [ 35.3 94 0.002 33.7 6.2 77 182-267 568-664 (673)
79 PF00038 Filament: Intermediat 35.1 3.7E+02 0.0081 24.9 10.9 51 172-222 52-109 (312)
80 KOG0804 Cytoplasmic Zn-finger 35.1 5E+02 0.011 27.8 11.3 40 175-214 348-387 (493)
81 PF12761 End3: Actin cytoskele 34.9 1.6E+02 0.0035 27.7 7.1 51 193-255 101-151 (195)
82 PF07106 TBPIP: Tat binding pr 34.6 1.1E+02 0.0025 26.4 5.8 51 173-223 78-130 (169)
83 KOG2077 JNK/SAPK-associated pr 34.6 1.7E+02 0.0038 32.3 8.1 60 177-236 317-388 (832)
84 PF10112 Halogen_Hydrol: 5-bro 34.5 3E+02 0.0065 24.4 8.5 83 194-287 67-149 (199)
85 KOG4343 bZIP transcription fac 33.9 85 0.0018 34.1 5.7 32 191-222 312-343 (655)
86 PF10473 CENP-F_leu_zip: Leuci 33.7 2.4E+02 0.0052 25.1 7.7 83 172-277 8-97 (140)
87 PF03961 DUF342: Protein of un 33.6 3.5E+02 0.0076 27.2 9.7 77 193-272 332-408 (451)
88 PF13260 DUF4051: Protein of u 33.4 39 0.00085 26.1 2.4 23 204-226 27-49 (54)
89 PF14645 Chibby: Chibby family 33.2 45 0.00097 28.5 3.0 21 204-224 73-93 (116)
90 smart00338 BRLZ basic region l 32.8 91 0.002 23.1 4.3 30 240-269 34-63 (65)
91 PF14073 Cep57_CLD: Centrosome 32.7 3.2E+02 0.007 25.5 8.6 27 198-224 60-86 (178)
92 PF13863 DUF4200: Domain of un 32.1 2.7E+02 0.0059 22.6 7.3 31 192-222 78-108 (126)
93 COG1792 MreC Cell shape-determ 31.9 63 0.0014 31.1 4.1 36 241-276 78-113 (284)
94 smart00150 SPEC Spectrin repea 31.5 2E+02 0.0044 20.8 7.8 55 190-249 33-87 (101)
95 PF13805 Pil1: Eisosome compon 31.4 5.2E+02 0.011 25.5 11.6 83 193-282 126-213 (271)
96 PF05300 DUF737: Protein of un 31.3 84 0.0018 29.2 4.6 32 188-219 130-165 (187)
97 PF08182 Pedibin: Pedibin/Hym- 31.3 86 0.0019 22.6 3.6 30 193-222 2-31 (35)
98 PF06156 DUF972: Protein of un 30.5 2.1E+02 0.0045 24.3 6.5 27 196-222 16-42 (107)
99 KOG0982 Centrosomal protein Nu 30.4 1.8E+02 0.0039 31.0 7.2 19 205-223 300-318 (502)
100 PF04871 Uso1_p115_C: Uso1 / p 30.2 2.2E+02 0.0048 24.7 6.8 19 281-299 101-119 (136)
101 KOG3091 Nuclear pore complex, 30.1 5.8E+02 0.013 27.5 10.9 77 171-249 345-428 (508)
102 PHA03155 hypothetical protein; 29.8 72 0.0016 28.1 3.7 84 204-296 10-98 (115)
103 PF05701 WEMBL: Weak chloropla 29.7 6.6E+02 0.014 26.1 13.3 100 174-274 295-407 (522)
104 PRK09413 IS2 repressor TnpA; R 29.4 85 0.0018 26.0 4.0 33 241-273 73-105 (121)
105 PRK14160 heat shock protein Gr 29.0 3.5E+02 0.0075 25.6 8.3 27 188-214 54-80 (211)
106 PF04977 DivIC: Septum formati 28.6 1.4E+02 0.003 22.0 4.6 31 192-222 21-51 (80)
107 TIGR02231 conserved hypothetic 28.5 4E+02 0.0086 27.2 9.2 73 193-265 76-164 (525)
108 PF04156 IncA: IncA protein; 28.2 4E+02 0.0086 23.1 9.3 27 196-222 124-150 (191)
109 PF11365 DUF3166: Protein of u 27.7 60 0.0013 27.4 2.8 29 193-221 67-95 (96)
110 PRK15422 septal ring assembly 27.7 1.8E+02 0.0038 24.2 5.4 32 236-267 22-60 (79)
111 PRK00888 ftsB cell division pr 27.6 89 0.0019 26.0 3.8 11 250-260 45-55 (105)
112 PF06894 Phage_lambd_GpG: Bact 27.5 2.4E+02 0.0051 24.8 6.5 51 255-305 50-119 (127)
113 KOG4083 Head-elevated expressi 27.3 1.1E+02 0.0023 29.1 4.6 33 189-221 84-120 (192)
114 PF12711 Kinesin-relat_1: Kine 26.7 63 0.0014 26.8 2.7 22 247-268 45-66 (86)
115 PF09744 Jnk-SapK_ap_N: JNK_SA 26.5 1.9E+02 0.004 26.1 5.8 23 201-223 88-110 (158)
116 PF07888 CALCOCO1: Calcium bin 26.4 2.6E+02 0.0055 30.1 7.6 66 191-258 167-232 (546)
117 PF07412 Geminin: Geminin; In 26.3 1.1E+02 0.0024 29.0 4.5 44 251-298 137-180 (200)
118 COG1579 Zn-ribbon protein, pos 26.3 3.7E+02 0.0081 25.9 8.1 35 193-227 87-121 (239)
119 PF02949 7tm_6: 7tm Odorant re 26.2 71 0.0015 27.7 3.1 27 262-289 172-198 (313)
120 PF14775 NYD-SP28_assoc: Sperm 26.2 93 0.002 23.9 3.4 27 243-269 30-56 (60)
121 PF11932 DUF3450: Protein of u 26.0 5.3E+02 0.011 23.8 10.9 21 270-290 94-114 (251)
122 PF14662 CCDC155: Coiled-coil 25.4 2.4E+02 0.0053 26.7 6.5 26 198-223 63-88 (193)
123 TIGR00722 ttdA_fumA_fumB hydro 25.2 41 0.00089 32.8 1.6 36 176-218 185-220 (273)
124 PF09726 Macoilin: Transmembra 24.4 2.9E+02 0.0063 30.2 7.8 17 207-223 543-559 (697)
125 PF02321 OEP: Outer membrane e 24.2 3.5E+02 0.0075 21.1 10.7 64 191-255 111-174 (188)
126 PF00769 ERM: Ezrin/radixin/mo 24.1 6.1E+02 0.013 23.9 10.1 35 191-225 15-49 (246)
127 PF10267 Tmemb_cc2: Predicted 23.6 5.1E+02 0.011 26.7 8.9 47 197-251 214-260 (395)
128 PF10473 CENP-F_leu_zip: Leuci 23.6 5.3E+02 0.011 23.0 11.7 31 194-224 9-39 (140)
129 PF07544 Med9: RNA polymerase 23.6 83 0.0018 25.1 2.8 46 178-223 22-73 (83)
130 PF05812 Herpes_BLRF2: Herpesv 23.5 1.3E+02 0.0028 26.5 4.1 85 204-297 5-98 (118)
131 PF00170 bZIP_1: bZIP transcri 23.3 3.1E+02 0.0068 20.3 6.5 29 193-221 31-59 (64)
132 PF05233 PHB_acc: PHB accumula 23.3 77 0.0017 22.8 2.3 24 262-285 3-26 (41)
133 PF07439 DUF1515: Protein of u 22.9 3.4E+02 0.0074 23.9 6.5 56 187-242 7-79 (112)
134 KOG3850 Predicted membrane pro 22.8 4.9E+02 0.011 27.5 8.7 63 199-276 264-326 (455)
135 PF02183 HALZ: Homeobox associ 22.7 1.5E+02 0.0032 21.8 3.7 30 241-270 7-36 (45)
136 TIGR01730 RND_mfp RND family e 22.7 4.2E+02 0.0091 23.9 7.4 51 196-246 65-116 (322)
137 PF15070 GOLGA2L5: Putative go 22.4 6.7E+02 0.015 27.2 9.9 81 189-269 30-117 (617)
138 PF15058 Speriolin_N: Sperioli 22.4 1.3E+02 0.0027 28.8 4.1 31 237-268 10-40 (200)
139 KOG0980 Actin-binding protein 22.4 3.8E+02 0.0082 30.9 8.3 58 188-254 487-544 (980)
140 PF05622 HOOK: HOOK protein; 22.4 29 0.00063 36.7 0.0 63 207-270 457-519 (713)
141 PF04880 NUDE_C: NUDE protein, 22.2 1.4E+02 0.0031 27.3 4.3 20 199-218 4-23 (166)
142 PRK14127 cell division protein 21.7 1.7E+02 0.0036 25.2 4.4 26 236-261 34-59 (109)
143 PF05644 Miff: Mitochondrial a 21.1 1.1E+02 0.0023 29.6 3.5 27 194-220 194-220 (246)
144 TIGR02209 ftsL_broad cell divi 21.0 3.8E+02 0.0082 20.3 6.3 28 196-223 25-52 (85)
145 PRK09413 IS2 repressor TnpA; R 20.8 1.6E+02 0.0035 24.3 4.1 20 204-223 80-99 (121)
146 PF04420 CHD5: CHD5-like prote 20.4 3.2E+02 0.0069 24.1 6.0 40 185-224 37-88 (161)
147 PF07889 DUF1664: Protein of u 20.3 4.8E+02 0.01 22.9 7.0 51 173-223 74-124 (126)
No 1
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.60 E-value=0.96 Score=44.65 Aligned_cols=80 Identities=30% Similarity=0.442 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCC-CCC-hhHHHHH----HHHHHHHHHhhhhhhhhhhH
Q 019675 186 MATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGI-RPE-EDDLVRL----QLEALLAEKSRLANENASLV 259 (337)
Q Consensus 186 mA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~-~pe-dDDLvR~----QlE~LlaEKsrLA~EN~~~a 259 (337)
+..+...|.+|-+.+|.+|.--+.||+.|.+||+.||...++-. ..| ++..|-- -|..|-.||..||+ .|-
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~---~~e 101 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLAL---KYE 101 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34456669999999999999999999999999999998644321 222 3333322 25667778888875 366
Q ss_pred HHhHHHHHH
Q 019675 260 RENQCLHQL 268 (337)
Q Consensus 260 rEn~~L~e~ 268 (337)
+|-.||..-
T Consensus 102 ~EEE~ltn~ 110 (310)
T PF09755_consen 102 QEEEFLTND 110 (310)
T ss_pred HHHHHHHHH
Confidence 666666443
No 2
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=92.27 E-value=2.2 Score=38.68 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=67.8
Q ss_pred hhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHH
Q 019675 172 KDKIMKKAKNLAISMA---TKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEK 248 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA---~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEK 248 (337)
-+.-|..|+.++..+. .+|-.|+.+--+|...+.-++ +-.|+...|-+-...+.+
T Consensus 5 i~~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~----~y~eei~~l~~~~~~~~~------------------ 62 (181)
T PF05769_consen 5 IEQILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMR----QYQEEIQELNELSKNRPR------------------ 62 (181)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcccc------------------
Confidence 4455777777777655 367778888888888887666 334443333332221111
Q ss_pred hhhhhhh---hhhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhcc
Q 019675 249 SRLANEN---ASLVRENQCLHQLVEYHQLTSQDLSASYEEFIQGM 290 (337)
Q Consensus 249 srLA~EN---~~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg~ 290 (337)
..|.+|| ..+-+||+=|+..|+=||-+++-+...|-+.+...
T Consensus 63 ~~l~~En~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l 107 (181)
T PF05769_consen 63 AGLQQENRQIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQL 107 (181)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777 67889999999999999999999998887766544
No 3
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.25 E-value=0.86 Score=35.90 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENA 256 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~ 256 (337)
||+.+-.-|.-.-.||.+|.+||..|| .|+..+-+|.+.|..-|.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr----------------~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLR----------------AQEKTWREERAQLLEKNE 45 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 466677777888899999999999887 456666667666665554
No 4
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.55 E-value=3.5 Score=32.35 Aligned_cols=65 Identities=31% Similarity=0.426 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLH 266 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~ 266 (337)
|-.|..+++.+|.-+-+..+-.+.+|++||. +-|-...||--...+=.+|-.||..+..|+.-+|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~---------ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR---------ERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999999986 3344556777777777888888888888865443
No 5
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.49 E-value=0.75 Score=43.67 Aligned_cols=45 Identities=29% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhh
Q 019675 211 CTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQL 274 (337)
Q Consensus 211 caqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQl 274 (337)
..+|.+||++||+- +..| +++|...+..+.+||+-||+++.|.+-
T Consensus 68 ~~~l~~EN~~Lr~e----------------~~~l---~~~~~~~~~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 68 VNNLEYENYKLRQE----------------LLKK---NQQLEILTQNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHH----------------HHHH---HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45789999999842 2222 233444445589999999999998753
No 6
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.74 E-value=7.2 Score=41.24 Aligned_cols=104 Identities=23% Similarity=0.282 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHH--
Q 019675 189 KAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLH-- 266 (337)
Q Consensus 189 KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~-- 266 (337)
|+...+-=|-.+.+.++.++.|.+.||+|.++|+.-... -..+=..||.||+.=..=+.++-+..-.+.-|..|+.
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r--l~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR--LREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 334344456678999999999999999999999964332 2334445666666555556777777777888888876
Q ss_pred ---HHHH---hh----------------hhhhhhhhhhHHhhhhcccccc
Q 019675 267 ---QLVE---YH----------------QLTSQDLSASYEEFIQGMYLDF 294 (337)
Q Consensus 267 ---e~ve---yh----------------Qlt~Qdv~e~~Eev~eg~~ld~ 294 (337)
||.| || ++.|||+.+-||..+..+.-|+
T Consensus 220 h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di 269 (546)
T KOG0977|consen 220 HKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI 269 (546)
T ss_pred cHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2322 22 3567888888888887776554
No 7
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.80 E-value=0.75 Score=36.01 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGF 225 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~ 225 (337)
+..|...+|..+.-..+|..+||.||.+||...
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467888899999999999999999999999753
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.15 E-value=28 Score=37.64 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc-cccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 019675 187 ATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDG-FVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCL 265 (337)
Q Consensus 187 A~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg-~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L 265 (337)
-.+.+=|-.|+|.++.||.-..++|..||.|..-||.- ++ ...+-+.| -.-|-++-.+...|. .+++-|+|+=
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e--~~~~~e~L-~~aL~amqdk~~~LE---~sLsaEtriK 617 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE--SEKDTEVL-MSALSAMQDKNQHLE---NSLSAETRIK 617 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHH-HHHHHHHHHHHHHHH---HhhhHHHHHH
Confidence 34556677899999999999999999999999988875 43 22233333 233333333333332 2466677765
Q ss_pred HHHHHh-----hh-------hhhhh--hh---hhHHhhhhcccccc
Q 019675 266 HQLVEY-----HQ-------LTSQD--LS---ASYEEFIQGMYLDF 294 (337)
Q Consensus 266 ~e~vey-----hQ-------lt~Qd--v~---e~~Eev~eg~~ld~ 294 (337)
.+|... .| +..|| ++ .-+.||+.|||-++
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~ 663 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDS 663 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 444322 12 22233 32 77889999999744
No 9
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.22 E-value=20 Score=33.15 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 019675 176 MKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANEN 255 (337)
Q Consensus 176 LKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN 255 (337)
+...|.+...+.+..--+......-=.+.-..-.-..+|.+||+.||+- +..|-++..+|
T Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e----------------~~~l~~~~~~~---- 95 (276)
T PRK13922 36 LSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKE----------------LLELESRLQEL---- 95 (276)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH----
Confidence 3344555555444443333333333334333444556788888888742 33333333333
Q ss_pred hhhHHHhHHHHHHHHhhhhh
Q 019675 256 ASLVRENQCLHQLVEYHQLT 275 (337)
Q Consensus 256 ~~~arEn~~L~e~veyhQlt 275 (337)
..+..||.-|++++.+.+-.
T Consensus 96 ~~l~~en~~L~~lL~~~~~~ 115 (276)
T PRK13922 96 EQLEAENARLRELLNLKESL 115 (276)
T ss_pred HHHHHHHHHHHHHhcCcccC
Confidence 25677888999998876543
No 10
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=80.55 E-value=9.9 Score=33.41 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=42.6
Q ss_pred CChhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 019675 170 SPKDKIMKKAKNLAIS--MATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFV 226 (337)
Q Consensus 170 ~~~e~qLKaSRdVA~a--mA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~ 226 (337)
..-+.+|..+-|+.-. |-| ++.|...+|..+--.-+|..+||+||..||....
T Consensus 44 vaIDNKIeQAMDLVKtHLmfA----VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 44 VAIDNKIEQAMDLVKTHLMFA----VREEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred EeechHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3467778888887644 333 6888999999999999999999999999998654
No 11
>smart00340 HALZ homeobox associated leucin zipper.
Probab=75.39 E-value=3.3 Score=30.93 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 019675 201 KSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LRe 223 (337)
..|-.|.|+-|..|-|||++|+.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~k 26 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQK 26 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999974
No 12
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.31 E-value=9.8 Score=29.39 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhcc
Q 019675 243 ALLAEKSRLANENASLVRENQCLHQLVEYHQLTSQDLSASYEEFIQGM 290 (337)
Q Consensus 243 ~LlaEKsrLA~EN~~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg~ 290 (337)
.|-.+=.+|.-.=.+..+||+-|++-|+=-.=+.|||.+.||-|++++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444555666666778889999999999999999999999999999987
No 13
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=72.55 E-value=47 Score=31.41 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc-------cccCCCCC---------hhHHHHHHHHHHHHHH
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDG-------FVKGIRPE---------EDDLVRLQLEALLAEK 248 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg-------~~kG~~pe---------dDDLvR~QlE~LlaEK 248 (337)
.+=.+-...+.|+..+|..- ..|-+||+.|||- ++||-+.. --.+||..+...+..=
T Consensus 45 evNrrlQ~hl~EIR~LKe~N-------qkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL 117 (195)
T PF10226_consen 45 EVNRRLQQHLNEIRGLKEVN-------QKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKL 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33445555566666665543 3456999999974 33333222 1467777777666655
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHhh
Q 019675 249 SRLANENASLVRENQCLHQLVEYH 272 (337)
Q Consensus 249 srLA~EN~~~arEn~~L~e~veyh 272 (337)
.-|-.-=..+.|||..|+||.-|-
T Consensus 118 ~eLE~kq~~L~rEN~eLKElcl~L 141 (195)
T PF10226_consen 118 KELEDKQEELIRENLELKELCLYL 141 (195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555444567889999999998763
No 14
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=71.33 E-value=9.2 Score=36.62 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
-++||.-.+++.....+..+||+||++||+-
T Consensus 75 n~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 75 NEELKKELAELEQLLEEVESLEEENKRLKEL 105 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888899999999999999999974
No 15
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=71.31 E-value=20 Score=32.61 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 019675 201 KSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LRe 223 (337)
-.-|.--+.||.-|++-|-+||+
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLRe 88 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLRE 88 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34466678999999999999985
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.96 E-value=15 Score=31.02 Aligned_cols=31 Identities=39% Similarity=0.444 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 240 QLEALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 240 QlE~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
+|+.|-..=..|-.||+.+..||.-||+.+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677889999999999999874
No 17
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=70.03 E-value=7.1 Score=33.51 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhHhhh
Q 019675 205 CFMQERCTLLEEENRRLR 222 (337)
Q Consensus 205 ~f~~~RcaqLEEENk~LR 222 (337)
...|.|.-+|||||.+||
T Consensus 75 ~rlkkk~~~LeEENNlLk 92 (108)
T cd07429 75 LRLKKKNQQLEEENNLLK 92 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344568889999999887
No 18
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.96 E-value=27 Score=34.70 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCC------C-h-------hHHHHH--HHHHHHHHH
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRP------E-E-------DDLVRL--QLEALLAEK 248 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~p------e-d-------DDLvR~--QlE~LlaEK 248 (337)
++--|-|.|-.|-+.+|.+.+..+.=+.++||+-.+|-..+.+--.. . . +|..|. ++-.|+++-
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666655322220000 0 1 222222 234566665
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHhhh-----h--hhhhhhhhHHhhhh
Q 019675 249 SRLANENASLVRENQCLHQLVEYHQ-----L--TSQDLSASYEEFIQ 288 (337)
Q Consensus 249 srLA~EN~~~arEn~~L~e~veyhQ-----l--t~Qdv~e~~Eev~e 288 (337)
..|-+-=..|+-||.=|+..+.--. | -.+|+-+-|.|++.
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666655543221 1 23455577777654
No 19
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=68.15 E-value=18 Score=29.58 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 186 MATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 186 mA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
+-..|+.|+.-|..+-.-+.-.++-|.+|+.||+.|.+
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777778888888888888875
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.54 E-value=31 Score=36.20 Aligned_cols=68 Identities=26% Similarity=0.347 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHH-HHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALL-AEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~Ll-aEKsrLA~EN~~~arEn~~L~e~v 269 (337)
|--++|.++.+|.-+..--..|-+||++||.... -|..|+..-| +++.+|.+|-..+..|.+-|+.++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~---------~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQ---------SIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666667778888888875332 2445555444 677788888777777777666655
No 21
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.66 E-value=46 Score=29.66 Aligned_cols=63 Identities=29% Similarity=0.374 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHH--hhhhhhhhhh
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEK--SRLANENASL 258 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEK--srLA~EN~~~ 258 (337)
...+.|..+++.+...+.+|.+|+++.+-++...+. =-|.++-+||+.-+.|+ .+|-.||..+
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----LQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888999999999998888776542 24778888877666554 3455555543
No 22
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=64.80 E-value=49 Score=35.93 Aligned_cols=89 Identities=24% Similarity=0.219 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccC---CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHH
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKG---IRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQL 268 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG---~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~ 268 (337)
+..-|+--|=.+|+||+.|+-.||.|+.-||....+- ..-+--|.|-.+-..|-.--+-.++=+.-|-|.--.|++.
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e 311 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE 311 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677889999999999999999999642221 0111112222222333332222344456677888888899
Q ss_pred HHhhhhhhhhhh
Q 019675 269 VEYHQLTSQDLS 280 (337)
Q Consensus 269 veyhQlt~Qdv~ 280 (337)
.+-|-.+.++|.
T Consensus 312 ~e~~~~qI~~le 323 (629)
T KOG0963|consen 312 REKHKAQISALE 323 (629)
T ss_pred HHHHHHHHHHHH
Confidence 999998888887
No 23
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=63.89 E-value=77 Score=27.42 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccc
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVK 227 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~k 227 (337)
.|=+|-+.|.-|.|+.+.=-.....||.-||-.+|..|..+.+
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888899998887665566689999999999999976543
No 24
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.29 E-value=18 Score=26.42 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 233 EDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 233 dDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~v 269 (337)
|=|..+.+-++|-++-.+|.+||..+..|...|.+.+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456667778888888888888888888888777654
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.55 E-value=35 Score=27.07 Aligned_cols=47 Identities=30% Similarity=0.431 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 019675 197 LKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLH 266 (337)
Q Consensus 197 LKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~ 266 (337)
+..+-+-+.-|-+.|+.|..||..|+ .++..|..||..+..||.-|+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLk-----------------------e~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELK-----------------------EKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHhHHHHHHHHHHHHHHHH
Confidence 44445556666777777776665555 445555677777777777776
No 26
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.62 E-value=67 Score=31.78 Aligned_cols=44 Identities=34% Similarity=0.379 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhh
Q 019675 201 KSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLAN 253 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~ 253 (337)
|+-.+-+..-+.-|+|||++|+- +.|++|-+=+.|+++--.|-+
T Consensus 89 KaRm~eme~~i~dL~een~~L~~---------en~~Lr~~n~~L~~~n~el~~ 132 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQN---------ENDSLRAINESLLAKNHELDS 132 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhhHHHHH
Confidence 44555566667778888888873 557888888888887555443
No 27
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=60.33 E-value=19 Score=29.38 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 239 LQLEALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 239 ~QlE~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
..|+.|...=-..-.||..+..||+||++-+.
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566777788888999887664
No 28
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.16 E-value=75 Score=28.35 Aligned_cols=44 Identities=36% Similarity=0.531 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 178 KAKNLAISMATKAAT---LARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 178 aSRdVA~amA~KAkl---l~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
+-+++...+.-|.++ |.-|+-++.-.+.-+.+|+..|++||+.|
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666654 56788888888888999999999999877
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.92 E-value=1.1e+02 Score=28.08 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 019675 172 KDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGF 225 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~ 225 (337)
.+.+|+.++..|-..-.|..=+.|=|+.|..+|.-+.+|+..+|...+.|.+-.
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 788999999999999999998999999999999999999888888888777543
No 30
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.05 E-value=63 Score=34.47 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=54.1
Q ss_pred hccccCCCCChhH-HH---HHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhcccccccCCC
Q 019675 223 DGFVKGIRPEEDD-LV---RLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQLTSQDLSASYEEFIQGMYLDFSSPS 298 (337)
Q Consensus 223 eg~~kG~~pedDD-Lv---R~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg~~ld~Ssp~ 298 (337)
+..+.|..+.|.. |+ -.++|.|---=-|||.|-+-- --||-||+.-...-.| |+-.|+.+++|-...-+.-+
T Consensus 234 ~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrlaset~dn---D~aL~eILqanD~ltr-vi~~ykt~~~G~~~~g~a~t 309 (594)
T KOG1086|consen 234 DYSQEGNASPDNELLLQEVYNRCEQLRPTLFRLASETEDN---DPALAEILQANDNLTR-VINLYKTPKEGNVANGSART 309 (594)
T ss_pred hhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccccC---cHHHHHHHhhhhhHHh-hhhhccccccccccccccee
Confidence 4455566555444 43 235666655566888875432 4689999876544333 67899999999988888888
Q ss_pred CCCCCCCC
Q 019675 299 SAKSGETG 306 (337)
Q Consensus 299 ~~i~~~~~ 306 (337)
.++++.+.
T Consensus 310 ~slpd~q~ 317 (594)
T KOG1086|consen 310 QSLPDSQS 317 (594)
T ss_pred ccCCcchh
Confidence 88777654
No 31
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=57.88 E-value=9.2 Score=29.13 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc
Q 019675 202 SDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 202 sdl~f~~~RcaqLEEENk~LReg 224 (337)
-|=.-|..|++.|+.||+.||.-
T Consensus 22 ~d~~~a~~rl~~l~~EN~~Lr~e 44 (52)
T PF12808_consen 22 LDRSAARKRLSKLEGENRLLRAE 44 (52)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999964
No 32
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.78 E-value=1.4e+02 Score=29.03 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH-hHHHHHHHHh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRE-NQCLHQLVEY 271 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arE-n~~L~e~vey 271 (337)
+..||+.++.+-.-+.+.+..||.|+..| ..+|+.|-+|...|.++-..|-++ |.+-.++.++
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l----------------~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~ 111 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREEL----------------DQELEELEEELEELDEEEEEYWREYNELQLELIEF 111 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665554 466778888888887655555544 4444455443
No 33
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=57.44 E-value=44 Score=28.10 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 190 AATLARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 190 Akll~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
-..+.+.++..++++.-...|-..||.|++.|++|
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456667778888888999999999999999998
No 34
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=57.26 E-value=16 Score=36.55 Aligned_cols=29 Identities=38% Similarity=0.546 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019675 188 TKAATLARELKSIKSDLCFMQERCTLLEE 216 (337)
Q Consensus 188 ~KAkll~rELKtvksdl~f~~~RcaqLEE 216 (337)
.+-.-+..||..++.+|-||+++|++||.
T Consensus 189 ~~l~~~~~eL~~~~k~L~faqekn~Llqs 217 (323)
T PF08537_consen 189 ERLNDLEKELEITKKDLKFAQEKNALLQS 217 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445788999999999999999988875
No 35
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.22 E-value=20 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
+.+++..++..+.-.++|-+.|++|.+.|+++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 55666666666666666666666666666643
No 36
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.86 E-value=49 Score=31.55 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 019675 199 SIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLH 266 (337)
Q Consensus 199 tvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~ 266 (337)
-|.+.=..-+.|+.+||+|++.+. .++..|-+|-..|-..|..+--=.|||+
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~----------------~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQ----------------QTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555678999999999998775 3456677777777777776666666654
No 37
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=55.66 E-value=15 Score=31.10 Aligned_cols=30 Identities=37% Similarity=0.441 Sum_probs=23.1
Q ss_pred HHHHHHhHhhhhcccc--C---CCCChhHHHHHHH
Q 019675 212 TLLEEENRRLRDGFVK--G---IRPEEDDLVRLQL 241 (337)
Q Consensus 212 aqLEEENk~LReg~~k--G---~~pedDDLvR~Ql 241 (337)
.+.||-+++||.++.. | ...-|||=||+||
T Consensus 87 ~KtEeSL~rlkk~~~~~~~~~~~~~sD~dKIr~QL 121 (125)
T PF12022_consen 87 RKTEESLKRLKKRRKRTSGSSSGGMSDDDKIRLQL 121 (125)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCcHHHHHHHH
Confidence 4678999999987443 2 3556999999998
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.48 E-value=1.2e+02 Score=28.21 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019675 193 LARELKSIKSDLCFMQ 208 (337)
Q Consensus 193 l~rELKtvksdl~f~~ 208 (337)
|.+||+.+++.|+-+.
T Consensus 98 le~el~~l~~~l~~~~ 113 (206)
T PRK10884 98 LENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666665543
No 39
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=54.20 E-value=20 Score=34.19 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---H-HHHHhHhhhh
Q 019675 193 LARELKSIKSDLCFMQERCT---L-LEEENRRLRD 223 (337)
Q Consensus 193 l~rELKtvksdl~f~~~Rca---q-LEEENk~LRe 223 (337)
|..|-+.+|..++.++.+.. + |+.||++||+
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777776655433333 3 8888888885
No 40
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=54.04 E-value=88 Score=24.82 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHH
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLA 246 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~Lla 246 (337)
+.+.|.--|.+-...+|.+=...+++.+++..|+..|.+..+ +-|..+|+++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne---------~Ar~rvEamI~ 56 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE---------QARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 567888899999999999999999999999999999998754 67888998875
No 41
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.90 E-value=1.5e+02 Score=27.08 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccc
Q 019675 188 TKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVK 227 (337)
Q Consensus 188 ~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~k 227 (337)
++.+.+..+|+.++-+-....+||.+|+.|-..|...|..
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578899999999999999999999999888877663
No 42
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=52.92 E-value=64 Score=30.76 Aligned_cols=52 Identities=19% Similarity=0.122 Sum_probs=31.2
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 019675 167 DGPSPKDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFV 226 (337)
Q Consensus 167 ~~~~~~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~ 226 (337)
......+-..+.-||.+.+ .|....=|.-..-++.|..+||.||..||...+
T Consensus 188 ~~~~~~~y~err~rNN~A~--------~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAV--------RKSRDKRKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred hhcCCHHHHHHHHhhhHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555554332 444444444446778899999999988886544
No 43
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.09 E-value=23 Score=30.36 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 240 QLEALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 240 QlE~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
+|+.|-+.=..|-.||+.+..||.-||+.+.
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556667788888889999998887
No 44
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=51.58 E-value=1.4e+02 Score=33.17 Aligned_cols=105 Identities=23% Similarity=0.186 Sum_probs=71.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc---ccc-CCCCChhHHHHHHHHHHHHH
Q 019675 172 KDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDG---FVK-GIRPEEDDLVRLQLEALLAE 247 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg---~~k-G~~pedDDLvR~QlE~LlaE 247 (337)
-++.||+-|.++=-.+++..++..+|.-+..+..-++.=...|.+|.|.=++- +.. .....+.+-... |+.....
T Consensus 37 wspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q 115 (775)
T PF10174_consen 37 WSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEELRAQRELNRLQQELEKAQYEFESLQE-LDKAQEQ 115 (775)
T ss_pred cchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccccchhhh-hhhHHHH
Confidence 34569999999999999999999999999999999999999999998553331 111 011222222222 5555555
Q ss_pred HhhhhhhhhhhHHHhHHHHHHHHhhhhhhh
Q 019675 248 KSRLANENASLVRENQCLHQLVEYHQLTSQ 277 (337)
Q Consensus 248 KsrLA~EN~~~arEn~~L~e~veyhQlt~Q 277 (337)
=.||..|+..+.+|+.-|+.-++=-|+.+.
T Consensus 116 ~~rl~~E~er~~~El~~lr~~lE~~q~~~e 145 (775)
T PF10174_consen 116 FERLQAERERLQRELERLRKTLEELQLRIE 145 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665555443
No 45
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.21 E-value=65 Score=27.60 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
.|-.....|..||..+|.++.-+-+-=+.|.-||..||+
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777776666666666666666666664
No 46
>PRK09039 hypothetical protein; Validated
Probab=50.18 E-value=90 Score=30.69 Aligned_cols=66 Identities=15% Similarity=0.280 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHH
Q 019675 173 DKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAE 247 (337)
Q Consensus 173 e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaE 247 (337)
...|...+.+....-.+..+|.+|+..+|+.|+-.+.-++-+|+..+-.+...+ +| ...|+.++++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~--------~L-~~~L~~a~~~ 187 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA--------DL-GRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHH
Confidence 345666666767777778888888888888888888777777777755554433 22 4566666666
No 47
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.89 E-value=58 Score=24.19 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q 019675 203 DLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 203 dl~f~~~RcaqLEEENk~LR 222 (337)
-+.....++..|+.+|..|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665554
No 48
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.45 E-value=42 Score=26.85 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019675 178 KAKNLAISMATK--AATLARELKSIKSDLCFMQERCTLLEEENRR 220 (337)
Q Consensus 178 aSRdVA~amA~K--Akll~rELKtvksdl~f~~~RcaqLEEENk~ 220 (337)
.|+.|+..+..+ +.-|..|.+.+|..+.-....+..+|++-..
T Consensus 55 ~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 55 LSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666653 5678889999999999999988888887544
No 49
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=49.33 E-value=40 Score=31.71 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=37.7
Q ss_pred HHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhh
Q 019675 212 TLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYH 272 (337)
Q Consensus 212 aqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyh 272 (337)
+-|+--|++|++-..| +...+|+.-..-+||+.|+..+...-+.|+++|++.
T Consensus 11 ~dL~~~n~~L~~en~k---------L~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 11 EDLQLNNQKLADENAK---------LQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666654433 335678888888889999998888888888887765
No 50
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.13 E-value=44 Score=26.51 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 190 AATLARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 190 Akll~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
..+|..|+..+|..-.-.++--..|.+||..|+.-
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34688899888888777788888999999999843
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.09 E-value=2.2e+02 Score=26.39 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHH
Q 019675 200 IKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQC 264 (337)
Q Consensus 200 vksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~ 264 (337)
+..+|...+.+.+.||....-|..-+. .+-+-....+..|-+|-..|-.+-....+|.+-
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~~-----~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRLD-----EEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHHH-----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444443222 112222233444444444454444444444433
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.26 E-value=2e+02 Score=26.70 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhHhh
Q 019675 206 FMQERCTLLEEENRRL 221 (337)
Q Consensus 206 f~~~RcaqLEEENk~L 221 (337)
-++.-...|++||+.|
T Consensus 129 ~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 129 QSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444466666555
No 53
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.47 E-value=2.5e+02 Score=26.48 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHH
Q 019675 189 KAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQL 268 (337)
Q Consensus 189 KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~ 268 (337)
+|.+|.-+++-....-.-...+-..+|+++.+|+....+ .-++=..+...+..+.++..+|..+...-..|..-|+.=
T Consensus 34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~--~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEM--QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333445677888888765443 122333344556666667777777777777777777653
Q ss_pred H
Q 019675 269 V 269 (337)
Q Consensus 269 v 269 (337)
+
T Consensus 112 l 112 (246)
T PF00769_consen 112 L 112 (246)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.30 E-value=2.7e+02 Score=26.89 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH-hhhhhhhhhh------hhHHhhhhccccccc
Q 019675 240 QLEALLAEKSRLANENASLVRENQCLHQLVE-YHQLTSQDLS------ASYEEFIQGMYLDFS 295 (337)
Q Consensus 240 QlE~LlaEKsrLA~EN~~~arEn~~L~e~ve-yhQlt~Qdv~------e~~Eev~eg~~ld~S 295 (337)
||+.|.++-..+..+-.-+.-|.+-+..+++ -...|.+||. ...|..+..-.+-++
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 3333333333333344444444555555554 4556788877 334444433344444
No 55
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=46.89 E-value=1.2e+02 Score=26.97 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHH
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQ 240 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~Q 240 (337)
-|..++..+-+-+.-.+.++.-|--||+-||.=.. .|=-||.||++
T Consensus 65 ~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~---t~LPd~V~RL~ 110 (135)
T TIGR03495 65 QLRQQLAQARALLAQREQRIERLKRENEDLRRWAD---TPLPDDVIRLR 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc---CCCcHHHHHHh
Confidence 35666777777778888888888889999998766 35678888875
No 56
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=46.17 E-value=12 Score=29.46 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhh
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLVEYHQ 273 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQ 273 (337)
.|.|-..-+.|...|+.+..||.+|+..+.-.|
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~ 48 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNASPEQ 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 344444444555566777788888888765433
No 57
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=46.05 E-value=1.9e+02 Score=31.35 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhHhhhhcc--------ccCCCCC
Q 019675 182 LAISMATKAATLARELKSIKSDL---------------------CFMQERCTLLEEENRRLRDGF--------VKGIRPE 232 (337)
Q Consensus 182 VA~amA~KAkll~rELKtvksdl---------------------~f~~~RcaqLEEENk~LReg~--------~kG~~pe 232 (337)
-|+-|..|-+.|.+--+++++|+ .-++.-|..-|||.+.||... .+|.+++
T Consensus 289 ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e 368 (622)
T COG5185 289 EAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE 368 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH
Confidence 36677777888887777777764 345667888899999999652 2366664
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhcc
Q 019675 233 EDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQLTSQDLSASYEEFIQGM 290 (337)
Q Consensus 233 dDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg~ 290 (337)
|.|...+||-.|-.|=.....+..-|+-.|--..+-.|...++.|...+-|
T Consensus 369 -------~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~ 419 (622)
T COG5185 369 -------QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQY 419 (622)
T ss_pred -------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888778888888999999888888999888888887765
No 58
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.99 E-value=39 Score=35.71 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc-cccCCCCC-hhHHHH----HHHHHHHHHHhhhhhhhhhhHHHh
Q 019675 189 KAATLARELKSIKSDLCFMQERCTLLEEENRRLRDG-FVKGIRPE-EDDLVR----LQLEALLAEKSRLANENASLVREN 262 (337)
Q Consensus 189 KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg-~~kG~~pe-dDDLvR----~QlE~LlaEKsrLA~EN~~~arEn 262 (337)
...+|..+=|-+|.||.-.+--|.-+-|||+-|+-. ...-.+.+ ++..|- ...-+|..||--||. +|.+|-
T Consensus 51 rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~---~Ye~ee 127 (552)
T KOG2129|consen 51 RVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLAT---VYEVEE 127 (552)
T ss_pred HHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccch---hhhhhh
Confidence 344577777999999999999999999999999964 33334444 566654 233456666666664 788888
Q ss_pred HHH
Q 019675 263 QCL 265 (337)
Q Consensus 263 ~~L 265 (337)
.||
T Consensus 128 e~l 130 (552)
T KOG2129|consen 128 EFL 130 (552)
T ss_pred hhc
Confidence 775
No 59
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=44.42 E-value=1.1e+02 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 174 KIMKKAKNLAISMATKAA-TLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 174 ~qLKaSRdVA~amA~KAk-ll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
.+|+..++-|.+....++ ....+=+.+..++.-++.||.-|.+.|+.|=+
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544332222 22333455688899999999999999998853
No 60
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=43.21 E-value=33 Score=30.27 Aligned_cols=52 Identities=33% Similarity=0.445 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhh
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQ 273 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQ 273 (337)
-+-|.-||.-|-||-+ ||-..|| -|+ -.|..-|+.+.|||+.|+.++--.|
T Consensus 51 eQAMDLVKtHLmfAVR------EEVe~Lk----------------~qI-------~eL~er~~~Le~EN~lLk~~~spe~ 101 (123)
T KOG4797|consen 51 EQAMDLVKTHLMFAVR------EEVEVLK----------------EQI-------RELEERNSALERENSLLKTLASPEQ 101 (123)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHH----------------HHH-------HHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 4556779999999853 2332222 333 3345557777888888888875544
Q ss_pred h
Q 019675 274 L 274 (337)
Q Consensus 274 l 274 (337)
|
T Consensus 102 L 102 (123)
T KOG4797|consen 102 L 102 (123)
T ss_pred H
Confidence 4
No 61
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=42.89 E-value=41 Score=31.13 Aligned_cols=11 Identities=64% Similarity=0.875 Sum_probs=5.6
Q ss_pred HHHHHhHhhhh
Q 019675 213 LLEEENRRLRD 223 (337)
Q Consensus 213 qLEEENk~LRe 223 (337)
.|++||.+||+
T Consensus 97 ~l~~en~~L~~ 107 (276)
T PRK13922 97 QLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHH
Confidence 44555555553
No 62
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.44 E-value=59 Score=29.88 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 239 LQLEALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 239 ~QlE~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
.+++.|..|..+|-+++..|..+-+-|-.||+
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666654
No 63
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=41.16 E-value=20 Score=32.63 Aligned_cols=22 Identities=36% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhc
Q 019675 203 DLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 203 dl~f~~~RcaqLEEENk~LReg 224 (337)
..+--+++++||+-||+-||+-
T Consensus 154 ~~~~~qe~i~qL~~EN~~LRel 175 (181)
T PF05769_consen 154 NSQEEQEIIAQLETENKGLREL 175 (181)
T ss_pred hhHhHHHHHHHHHHHHHHHHHH
Confidence 4456679999999999999984
No 64
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.07 E-value=81 Score=33.25 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 183 AISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 183 A~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
+..+-.|-+.|.+|+..+.+.+.-.++++..||+||+.|++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33344444444455554445555667777888888887764
No 65
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.92 E-value=2.7e+02 Score=25.05 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
....++.++.-.+.|+..|.++...+|..
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~ 85 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKR 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666555543
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.64 E-value=2.7e+02 Score=29.95 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=75.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccc-----cCCCCChhHHHHHHHHHHHH
Q 019675 172 KDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFV-----KGIRPEEDDLVRLQLEALLA 246 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~-----kG~~pedDDLvR~QlE~Lla 246 (337)
.+.-|-.+|.+--..+.+-.-+..|++-++.++.-++.+....+.+-.--|+... -+.-..+..++..-...|.-
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4444656666666666655567788888888888888777666555444443211 13334577788888888999
Q ss_pred HHhhhhhhhhhhHHHhHHHHHHHH-------hhhhhhhhhhhh
Q 019675 247 EKSRLANENASLVRENQCLHQLVE-------YHQLTSQDLSAS 282 (337)
Q Consensus 247 EKsrLA~EN~~~arEn~~L~e~ve-------yhQlt~Qdv~e~ 282 (337)
|+.||..||..+..+..-+|..++ =+|...|++.+.
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999998888875433 235566666633
No 67
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=40.09 E-value=67 Score=34.75 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhhhhc
Q 019675 178 KAKNLAISMATKAATLARELKSIK---SDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 178 aSRdVA~amA~KAkll~rELKtvk---sdl~f~~~RcaqLEEENk~LReg 224 (337)
--||+|++|-----+..||+-.|- ..=...+.-+..|-|||++||-+
T Consensus 623 dirNl~~ell~Qfhm~~~Ems~llery~eNe~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 623 DIRNLALELLLQFHMFMREMSRLLERYNENEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhcc
Confidence 457788999888888889988875 22233555567778888888865
No 68
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=39.00 E-value=16 Score=32.59 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhh
Q 019675 237 VRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQLTS 276 (337)
Q Consensus 237 vR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQlt~ 276 (337)
|..+|-.|-++|.+|..+-..+..||.+||+=...||--+
T Consensus 13 l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~l 52 (181)
T PF09311_consen 13 LQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKL 52 (181)
T ss_dssp HHHHHHHHHHCCHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999888888776
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.91 E-value=3.7e+02 Score=29.43 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 019675 176 MKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANEN 255 (337)
Q Consensus 176 LKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN 255 (337)
|++--.+..++..++++|.++.+.--.+|+-++++...|.+.-++|.|.++. .-+--..+...++.++. +.+.+
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~--a~d~Qe~L~~R~~~vl~----~l~~~ 626 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE--AKDKQEKLMKRVDRVLQ----LLNSQ 626 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HHhcc
Confidence 3444457788999999999999988889999999999998888888876543 11111222233444443 22221
Q ss_pred h--hhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhc
Q 019675 256 A--SLVRENQCLHQLVEYHQLTSQDLSASYEEFIQG 289 (337)
Q Consensus 256 ~--~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg 289 (337)
. .=.-|+.|-.||-.+.. ..+++..+.+++-..
T Consensus 627 ~P~LS~AEr~~~~EL~~~~~-~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 627 LPVLSEAEREFKKELERMKD-QLQDLKASIEQLKKK 661 (717)
T ss_pred CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1 11236777777766665 357777777776533
No 70
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=38.83 E-value=3.2e+02 Score=25.95 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCC--------------------C-CChhHHHHHHHHHHHH
Q 019675 188 TKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGI--------------------R-PEEDDLVRLQLEALLA 246 (337)
Q Consensus 188 ~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~--------------------~-pedDDLvR~QlE~Lla 246 (337)
..-.....||..-+++....++-+++||.|+..||+...... . +..-+=.+.++|.|-+
T Consensus 66 ~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~a 145 (202)
T PF06818_consen 66 LELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRA 145 (202)
T ss_pred HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHH
Confidence 334455788888899999999999999999999997544320 1 2233335567888877
Q ss_pred HHhhhhhhh----hhhHHHhHHHH
Q 019675 247 EKSRLANEN----ASLVRENQCLH 266 (337)
Q Consensus 247 EKsrLA~EN----~~~arEn~~L~ 266 (337)
|=.++-+.+ .+|..|.+--.
T Consensus 146 eL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 146 ELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 755444433 35666655543
No 71
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.64 E-value=2.4e+02 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 019675 199 SIKSDLCFMQERCTLLEEENRRLRDGF 225 (337)
Q Consensus 199 tvksdl~f~~~RcaqLEEENk~LReg~ 225 (337)
.=|+.-.-+-.-|.-||.+|..||+-.
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777788999999999998643
No 72
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.45 E-value=60 Score=27.45 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
|.|-|.=|+.+.+-+++-++.||++|+.|+.
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~ 36 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTE 36 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999984
No 73
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.45 E-value=2.9e+02 Score=25.33 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 019675 190 AATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENAS 257 (337)
Q Consensus 190 Akll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~ 257 (337)
-+.|-.|+..+|....-.......+..||++|++...+ ...+=.=.+.+|...-..|..|++=-+.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~--a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKK--AEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777888899999886543 1122233345555555555555543333
No 74
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.15 E-value=2.6e+02 Score=25.47 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRE 261 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arE 261 (337)
+.+.+..+++++.-.+.+++.|+++...++.++... ..=..+|++...|..++..+..|
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~----------~eR~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES----------EEREELLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888887665532 12233444555555544444443
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.62 E-value=2.4e+02 Score=28.29 Aligned_cols=70 Identities=34% Similarity=0.326 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccC----CCCC--hhHHHH----------HHHHHHHHHHhhhhhhhhhhHHHhH-H
Q 019675 202 SDLCFMQERCTLLEEENRRLRDGFVKG----IRPE--EDDLVR----------LQLEALLAEKSRLANENASLVRENQ-C 264 (337)
Q Consensus 202 sdl~f~~~RcaqLEEENk~LReg~~kG----~~pe--dDDLvR----------~QlE~LlaEKsrLA~EN~~~arEn~-~ 264 (337)
..+.+.+++|..|||||..||.-...= ..-| +--||+ .|+-.|-.|=+|-..||..+-.|.- .
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999632220 1122 555665 4555666666666777877777764 4
Q ss_pred HHHHHHh
Q 019675 265 LHQLVEY 271 (337)
Q Consensus 265 L~e~vey 271 (337)
|.+||+.
T Consensus 240 lsqivdl 246 (306)
T PF04849_consen 240 LSQIVDL 246 (306)
T ss_pred HHHHHHH
Confidence 4566654
No 76
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=35.96 E-value=1.3e+02 Score=36.40 Aligned_cols=79 Identities=28% Similarity=0.265 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcccc---------CCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 201 KSDLCFMQERCTLLEEENRRLRDGFVK---------GIR--PEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LReg~~k---------G~~--pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~v 269 (337)
.-.+.-.+.||+-|+..|+.|-+.++. |.. +-+.||.++ +-.|--||-.+..+=.+..+||.+|++=|
T Consensus 1105 eqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~i-v~~LR~Ekei~~tk~~~lk~e~~~L~qq~ 1183 (1822)
T KOG4674|consen 1105 EQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNI-VSFLRKEKEIAETKLDTLKRENARLKQQV 1183 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHH-HHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445566789999999999999975332 222 125666654 56677788888888888888888888888
Q ss_pred Hhhhhhhhhhh
Q 019675 270 EYHQLTSQDLS 280 (337)
Q Consensus 270 eyhQlt~Qdv~ 280 (337)
.--+-+.||+-
T Consensus 1184 ~~~~k~i~dL~ 1194 (1822)
T KOG4674|consen 1184 ASLNRTIDDLQ 1194 (1822)
T ss_pred HHHHHHHHHHH
Confidence 88888888776
No 77
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.50 E-value=3.3e+02 Score=31.34 Aligned_cols=107 Identities=25% Similarity=0.321 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhhhc-----cccCCCCChhHHHHHHHHHH
Q 019675 174 KIMKKAKNLAISMATKAATLARELKSIKSD----LCFMQERCTLLEEENRRLRDG-----FVKGIRPEEDDLVRLQLEAL 244 (337)
Q Consensus 174 ~qLKaSRdVA~amA~KAkll~rELKtvksd----l~f~~~RcaqLEEENk~LReg-----~~kG~~pedDDLvR~QlE~L 244 (337)
-.-|-+|+.+.-++ .||+...|+. +.-|+.||+|++--+.-|--- +..-.+.+|..-+|.++--|
T Consensus 325 ~sqkd~~~~~~~~~------~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 325 ASQKDPRELQIEQL------SREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred cccCChhhHHHHHH------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33446677776654 4676666654 457888999988655444310 11112334555667766666
Q ss_pred HHHHhhh--------hhhhhhhHHHhHHHHHHHHhhhhhh--hhhhhhHHhh
Q 019675 245 LAEKSRL--------ANENASLVRENQCLHQLVEYHQLTS--QDLSASYEEF 286 (337)
Q Consensus 245 laEKsrL--------A~EN~~~arEn~~L~e~veyhQlt~--Qdv~e~~Eev 286 (337)
++....+ --||-.++-|||+=.-.--|-+|-- +|+..-|.|+
T Consensus 399 ~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 399 LASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6644333 3367788888888555555555432 3333444444
No 78
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=35.32 E-value=94 Score=33.72 Aligned_cols=77 Identities=31% Similarity=0.360 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhc----cccCCCCChhHHHHHHHHHHHH----
Q 019675 182 LAISMATKAATLARELKSIKSDLCFMQERCTLLEEE-------NRRLRDG----FVKGIRPEEDDLVRLQLEALLA---- 246 (337)
Q Consensus 182 VA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEE-------Nk~LReg----~~kG~~pedDDLvR~QlE~Lla---- 246 (337)
.+.|.-|++..++|+ |.+++|..-|.| |++|--. .+.=...--+|++-+|||-|++
T Consensus 568 ~~~a~~ag~~s~l~~---------~v~qs~~~~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~ 638 (673)
T KOG4378|consen 568 QMDADWAGEFSELRD---------FVDQSCEKVEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMF 638 (673)
T ss_pred hhhhhhhhhhHHHHH---------HHHhhhhhHHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456667777777775 667777766655 3333321 1110111245666699998875
Q ss_pred --HHhhhh---hhhhhhHHHhHHHHH
Q 019675 247 --EKSRLA---NENASLVRENQCLHQ 267 (337)
Q Consensus 247 --EKsrLA---~EN~~~arEn~~L~e 267 (337)
|-+||- .||..+.-|..||||
T Consensus 639 ~~Ems~llery~eNe~l~aelk~lre 664 (673)
T KOG4378|consen 639 MREMSRLLERYNENEMLKAELKFLRE 664 (673)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 889998 999999999999987
No 79
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=35.10 E-value=3.7e+02 Score=24.94 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhh
Q 019675 172 KDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCT-------LLEEENRRLR 222 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~Rca-------qLEEENk~LR 222 (337)
.+..|+..|...-.++.--.-|.-|+..++.++.-.+.||. -||.+...||
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67778888887776666444455566666666666655554 5556666666
No 80
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.08 E-value=5e+02 Score=27.83 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019675 175 IMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLL 214 (337)
Q Consensus 175 qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqL 214 (337)
||+.-|.-....-..|+.|..++..+.+.---+-+||.||
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~ 387 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQL 387 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544444444555554
No 81
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.87 E-value=1.6e+02 Score=27.72 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANEN 255 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN 255 (337)
|.|||..+.+-|.-+++-... + .+.....--|||.|+|.||.=|.+--++.
T Consensus 101 LkrELa~Le~~l~~~~~~~~~-----~-------~~~~~~~~~lvk~e~EqLL~YK~~ql~~~ 151 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAES-----R-------RSDTDSKPALVKREFEQLLDYKERQLREL 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----c-------ccCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 688888877766665544311 1 23344566899999999999887765554
No 82
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.63 E-value=1.1e+02 Score=26.43 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhh
Q 019675 173 DKIMKKAKNLAISMATKAATLARELKSIKSDL--CFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 173 e~qLKaSRdVA~amA~KAkll~rELKtvksdl--~f~~~RcaqLEEENk~LRe 223 (337)
+.+++.-++=........+.|.-||+++.+.+ .-+...+++|++|++.|.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666677777777777776644 3455566666666666554
No 83
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=34.59 E-value=1.7e+02 Score=32.31 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=43.5
Q ss_pred HHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----ccccCCCCChhHH
Q 019675 177 KKAKN-LAISMATKAA-------TLARELKSIKSDLCFMQERCTLLEEENRRLRD----GFVKGIRPEEDDL 236 (337)
Q Consensus 177 KaSRd-VA~amA~KAk-------ll~rELKtvksdl~f~~~RcaqLEEENk~LRe----g~~kG~~pedDDL 236 (337)
|-|-| |-+-..+|+- .|+-||..+|-.-.-+.+|+..||||.|++|- .+++---.|+||+
T Consensus 317 KNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddi 388 (832)
T KOG2077|consen 317 KNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDI 388 (832)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 44444 3456666764 46678888888888889999999999999993 4555555677775
No 84
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=34.51 E-value=3e+02 Score=24.44 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhh
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQ 273 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQ 273 (337)
.+|.+-++.-|.-|++-+.+|++.+.++|+-... .++..+..-=.++-..-...-+--.-.+..+.||.
T Consensus 67 ~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~-----------~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yL 135 (199)
T PF10112_consen 67 DREYEYIREILEEAKEKIRRIEKAIKRIRDLEMI-----------EKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYL 135 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHh
Confidence 4566667777777888888888888887764321 11221111111111111111222234566677888
Q ss_pred hhhhhhhhhHHhhh
Q 019675 274 LTSQDLSASYEEFI 287 (337)
Q Consensus 274 lt~Qdv~e~~Eev~ 287 (337)
-|+.++.+.|-++-
T Consensus 136 p~~~~l~~kY~~l~ 149 (199)
T PF10112_consen 136 PTAVKLLEKYAELE 149 (199)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888877654
No 85
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=33.91 E-value=85 Score=34.12 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 191 ATLARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 191 kll~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
+.|+.|-..+|.+=+..|+|++.|+-||++||
T Consensus 312 q~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 312 QALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 33444444444444444444444444444444
No 86
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.71 E-value=2.4e+02 Score=25.12 Aligned_cols=83 Identities=23% Similarity=0.243 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHH
Q 019675 172 KDKIMKKAKNLAISMATKAATLARELKSIKSDL-------CFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEAL 244 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA~KAkll~rELKtvksdl-------~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~L 244 (337)
....||+++.=+-++-.++-.|-|||..+-..+ .-++.=|.-|++ +|+.+
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~-----------------------el~~l 64 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEE-----------------------ELEEL 64 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------------------HHHHH
Confidence 345688888888888888888888887764433 223333333333 45555
Q ss_pred HHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhhh
Q 019675 245 LAEKSRLANENASLVRENQCLHQLVEYHQLTSQ 277 (337)
Q Consensus 245 laEKsrLA~EN~~~arEn~~L~e~veyhQlt~Q 277 (337)
-.+..+|-.|=.++..|+..|-..++=.|--..
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544444443333
No 87
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.64 E-value=3.5e+02 Score=27.15 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYH 272 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyh 272 (337)
|.++++.++..+.-.+.++..|+.....|..... + ...+.-.+.++..|...+..|..+-..+..+..-|.+-++-+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~--~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-Q--GKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666677777777777777777666665333 1 222333456677788888888777777777776676666655
No 88
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=33.41 E-value=39 Score=26.14 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhccc
Q 019675 204 LCFMQERCTLLEEENRRLRDGFV 226 (337)
Q Consensus 204 l~f~~~RcaqLEEENk~LReg~~ 226 (337)
-+|-++|=|+||..||.+|...+
T Consensus 27 rafrqdrdallear~kl~~r~~e 49 (54)
T PF13260_consen 27 RAFRQDRDALLEARNKLFRRSGE 49 (54)
T ss_pred HHHhhhHHHHHHHHHHHHhccch
Confidence 47889999999999999996543
No 89
>PF14645 Chibby: Chibby family
Probab=33.17 E-value=45 Score=28.53 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhc
Q 019675 204 LCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 204 l~f~~~RcaqLEEENk~LReg 224 (337)
..-.+++..+|+|||.+||=.
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk 93 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLK 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334567788999999999844
No 90
>smart00338 BRLZ basic region leucin zipper.
Probab=32.75 E-value=91 Score=23.13 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 240 QLEALLAEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 240 QlE~LlaEKsrLA~EN~~~arEn~~L~e~v 269 (337)
+++.|.++...|..+...+..|+..|++++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555655555543
No 91
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=32.68 E-value=3.2e+02 Score=25.49 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 198 KSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 198 Ktvksdl~f~~~RcaqLEEENk~LReg 224 (337)
+.+-+.|..|..||..||....-.|.-
T Consensus 60 ~dl~~qL~aAEtRCslLEKQLeyMRkm 86 (178)
T PF14073_consen 60 QDLSSQLSAAETRCSLLEKQLEYMRKM 86 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999999888777754
No 92
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.06 E-value=2.7e+02 Score=22.56 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
-...|++.++++|..++.++..|++....+.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666555443
No 93
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=31.94 E-value=63 Score=31.07 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhh
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLVEYHQLTS 276 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQlt~ 276 (337)
|...++|+..+..+...|.+||+-|++++.+-+-..
T Consensus 78 Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~ 113 (284)
T COG1792 78 LKKELAELEQLLEEVESLEEENKRLKELLDFKESSS 113 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 455678888899999999999999999999887773
No 94
>smart00150 SPEC Spectrin repeats.
Probab=31.45 E-value=2e+02 Score=20.76 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHh
Q 019675 190 AATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKS 249 (337)
Q Consensus 190 Akll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKs 249 (337)
+..++++++.++.++.--+.++..+...=+.|... .+.+-+-|+..++.|...=.
T Consensus 33 ~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~-----~~~~~~~i~~~~~~l~~~w~ 87 (101)
T smart00150 33 VEALLKKHEALEAELEAHEERVEALNELGEQLIEE-----GHPDAEEIEERLEELNERWE 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHHH
Confidence 45567788888888887777777777766666554 24566778888777765433
No 95
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=31.39 E-value=5.2e+02 Score=25.51 Aligned_cols=83 Identities=24% Similarity=0.252 Sum_probs=58.1
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhHhhhhccccCCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHH
Q 019675 193 LARELKSIK---SDLCFMQERCTLLEEENRRLRDGFVKGIR--PEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQ 267 (337)
Q Consensus 193 l~rELKtvk---sdl~f~~~RcaqLEEENk~LReg~~kG~~--pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e 267 (337)
-+--||.|+ ..|.=.++|-..|-.+..+|+...-...+ .-+..|||...|.|.+|. .| .+|.|+ .|+|
T Consensus 126 yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEA-qL----~n~kR~--~lKE 198 (271)
T PF13805_consen 126 YRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEA-QL----SNIKRQ--KLKE 198 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHH-HH----HHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHH-HH----HHhhHH--HHHH
Confidence 344566664 47888888888888888888753222221 127788888888888883 23 568886 7999
Q ss_pred HHHhhhhhhhhhhhh
Q 019675 268 LVEYHQLTSQDLSAS 282 (337)
Q Consensus 268 ~veyhQlt~Qdv~e~ 282 (337)
-+.||=-.+++..|-
T Consensus 199 a~~~~f~Al~E~aEK 213 (271)
T PF13805_consen 199 AYSLKFDALIERAEK 213 (271)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888887644
No 96
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=31.31 E-value=84 Score=29.17 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhH
Q 019675 188 TKAATLARELKSI----KSDLCFMQERCTLLEEENR 219 (337)
Q Consensus 188 ~KAkll~rELKtv----ksdl~f~~~RcaqLEEENk 219 (337)
.||+.|+|+|..- |..=+|=|+-++.||+-|-
T Consensus 130 ~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 130 QKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777554 3333677777777777664
No 97
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=31.29 E-value=86 Score=22.64 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
|.+|+.-+..-++-.-+||.+||+.-+-|.
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~ 31 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELS 31 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 577888888888889999999998777663
No 98
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.51 E-value=2.1e+02 Score=24.27 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
-|..+=+++.-.|.....|.|||-.||
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555
No 99
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.44 E-value=1.8e+02 Score=30.96 Aligned_cols=19 Identities=47% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHhhhh
Q 019675 205 CFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 205 ~f~~~RcaqLEEENk~LRe 223 (337)
.-.+-|..|||+||-.||.
T Consensus 300 Enlqmr~qqleeentelRs 318 (502)
T KOG0982|consen 300 ENLQMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456688899999999996
No 100
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=30.16 E-value=2.2e+02 Score=24.73 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=9.1
Q ss_pred hhHHhhhhcccccccCCCC
Q 019675 281 ASYEEFIQGMYLDFSSPSS 299 (337)
Q Consensus 281 e~~Eev~eg~~ld~Ssp~~ 299 (337)
..|-.-+.-.-.+||+--.
T Consensus 101 ~kyk~rLk~LG~eVSddE~ 119 (136)
T PF04871_consen 101 KKYKERLKELGEEVSDDED 119 (136)
T ss_pred HHHHHHHHHcCCCccCCcc
Confidence 4444444444455555443
No 101
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.09 E-value=5.8e+02 Score=27.48 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=52.1
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc------cccCCCC-ChhHHHHHHHHH
Q 019675 171 PKDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDG------FVKGIRP-EEDDLVRLQLEA 243 (337)
Q Consensus 171 ~~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg------~~kG~~p-edDDLvR~QlE~ 243 (337)
.|+.+.|-.|.--..+--+..-|..+-.+-=+-++-+|+|..-|+ .|+||-. +.+|-.- .|++-+|.||-+
T Consensus 345 ~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls--~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldt 422 (508)
T KOG3091|consen 345 VQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELS--HRILRVMIKQEILRKRGYALTPDEEELRAKLDT 422 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccCCcCCccHHHHHHHHHH
Confidence 466667777777777666666665444444456777888887775 5777732 4445543 378888999999
Q ss_pred HHHHHh
Q 019675 244 LLAEKS 249 (337)
Q Consensus 244 LlaEKs 249 (337)
|+++=.
T Consensus 423 ll~~ln 428 (508)
T KOG3091|consen 423 LLAQLN 428 (508)
T ss_pred HHHHhc
Confidence 998743
No 102
>PHA03155 hypothetical protein; Provisional
Probab=29.75 E-value=72 Score=28.06 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHH-HhhhhhhhhhhHHHhHHHHHHHHhhhhhhhhhh--
Q 019675 204 LCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAE-KSRLANENASLVRENQCLHQLVEYHQLTSQDLS-- 280 (337)
Q Consensus 204 l~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaE-KsrLA~EN~~~arEn~~L~e~veyhQlt~Qdv~-- 280 (337)
+.-+..++.+|+=|||-|+...-.|..|+|.-|---|=|.+++- =++|.. .+.-..|-+....+. .++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~-~A~~KIe~kVrk~~~--------~~vTk 80 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTK-KAEEKIRERVLKDLL--------PLVSK 80 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh--------hhccH
Confidence 34456788999999999998876666788777777787877653 233432 233333444333322 233
Q ss_pred hhHHhhhhcc--cccccC
Q 019675 281 ASYEEFIQGM--YLDFSS 296 (337)
Q Consensus 281 e~~Eev~eg~--~ld~Ss 296 (337)
+.+++++.+. +||||-
T Consensus 81 ~q~~~al~~lt~RidvSm 98 (115)
T PHA03155 81 NQCMEAIADIKYRIDVSI 98 (115)
T ss_pred HHHHHHHhcCeeeEEecc
Confidence 6788888874 789874
No 103
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=29.69 E-value=6.6e+02 Score=26.13 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhhhc------cccCCCCChhHHHHHH
Q 019675 174 KIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCT-------LLEEENRRLRDG------FVKGIRPEEDDLVRLQ 240 (337)
Q Consensus 174 ~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~Rca-------qLEEENk~LReg------~~kG~~pedDDLvR~Q 240 (337)
..|..+++=+..+-..+..|..||..+|.++.-+++|-. .|+.+..++|-- ..+.....-++ +-..
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~-l~~~ 373 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSE-LPKA 373 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHH-HHHH
Confidence 346677777788889999999999999999999998854 677777777732 11112222233 4567
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhh
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLVEYHQL 274 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQl 274 (337)
|..|-.|--..-.+-..-..|.+.+++-++--..
T Consensus 374 Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 374 LQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777665555555555566666665554433
No 104
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.42 E-value=85 Score=25.97 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhh
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLVEYHQ 273 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQ 273 (337)
+..+..|-.+|..++..+..||.+|...++|-.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566667888888888899999999988853
No 105
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.05 E-value=3.5e+02 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019675 188 TKAATLARELKSIKSDLCFMQERCTLL 214 (337)
Q Consensus 188 ~KAkll~rELKtvksdl~f~~~RcaqL 214 (337)
.|.+-|..++..++..+.-++..++.|
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~el 80 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEAL 80 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777666665555555444
No 106
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.63 E-value=1.4e+02 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
-+.+|+..++..+.-.+.+...|+++.+.|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777776666663
No 107
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.53 E-value=4e+02 Score=27.16 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccC-----------C-CC----ChhHHHHHHHHHHHHHHhhhhhhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKG-----------I-RP----EEDDLVRLQLEALLAEKSRLANENA 256 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG-----------~-~p----edDDLvR~QlE~LlaEKsrLA~EN~ 256 (337)
|..+|+.++..++.++.+.+-++...++|..-.... . .+ +-.+.++.|+..|.+++..|.++=.
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554322111 1 10 1235566677777776666655555
Q ss_pred hhHHHhHHH
Q 019675 257 SLVRENQCL 265 (337)
Q Consensus 257 ~~arEn~~L 265 (337)
.+.++..-|
T Consensus 156 ~~~~~l~~l 164 (525)
T TIGR02231 156 ELEKQLSEL 164 (525)
T ss_pred HHHHHHHHH
Confidence 555554444
No 108
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.23 E-value=4e+02 Score=23.12 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
+++.+++.+...++.+..+++|-+.|+
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666665
No 109
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.74 E-value=60 Score=27.45 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
|..|||.++.++.-...+.-+|+=|||.|
T Consensus 67 l~~eLk~a~~qi~~Ls~kv~eLq~ENRvl 95 (96)
T PF11365_consen 67 LQEELKLAREQINELSGKVMELQYENRVL 95 (96)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhccccc
Confidence 68899999999999999999999999854
No 110
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.72 E-value=1.8e+02 Score=24.22 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-------hHHHhHHHHH
Q 019675 236 LVRLQLEALLAEKSRLANENAS-------LVRENQCLHQ 267 (337)
Q Consensus 236 LvR~QlE~LlaEKsrLA~EN~~-------~arEn~~L~e 267 (337)
|.++-+|.|-..+..|++|+.. +.+||.-|++
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444455555555555555444 5555555543
No 111
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.57 E-value=89 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=3.9
Q ss_pred hhhhhhhhhHH
Q 019675 250 RLANENASLVR 260 (337)
Q Consensus 250 rLA~EN~~~ar 260 (337)
+|.++|..+.+
T Consensus 45 ~l~~~n~~L~~ 55 (105)
T PRK00888 45 KLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 112
>PF06894 Phage_lambd_GpG: Bacteriophage lambda minor tail protein (GpG); InterPro: IPR010027 This entry is represented by Bacteriophage lambda, GpG, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C terminus of protein G from phage lambda, with about 4% efficiency, to produce tail assembly protein G-T.
Probab=27.52 E-value=2.4e+02 Score=24.80 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.3
Q ss_pred hhhhHHHhHHHHHHHHhhh--------hhhhhhhhhHHhhhhccc-----------ccccCCCCCCCCCC
Q 019675 255 NASLVRENQCLHQLVEYHQ--------LTSQDLSASYEEFIQGMY-----------LDFSSPSSAKSGET 305 (337)
Q Consensus 255 N~~~arEn~~L~e~veyhQ--------lt~Qdv~e~~Eev~eg~~-----------ld~Ssp~~~i~~~~ 305 (337)
|....|-|.+|.-+-=.|. --.+||-+.+.+|+..+| +.+|-+.|..++.+
T Consensus 50 ~~~~i~~~A~LVA~SLwh~h~~k~~~~~~~~~v~~lq~eVm~tWp~eaI~~a~~~V~~LSGM~~~~~e~~ 119 (127)
T PF06894_consen 50 NRMNIRINAWLVAMSLWHSHPQKGEYPDPEEDVEELQQEVMSTWPPEAIGAAEEVVKSLSGMVPPVEETD 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 5667778888876655655 445888899999998887 56888855444443
No 113
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=27.27 E-value=1.1e+02 Score=29.05 Aligned_cols=33 Identities=39% Similarity=0.517 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhh
Q 019675 189 KAATLARELKSI----KSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 189 KAkll~rELKtv----ksdl~f~~~RcaqLEEENk~L 221 (337)
|+.-|+|+|... |..-+|-|++.+-|||.++.+
T Consensus 84 k~~~LAr~le~~~q~L~k~daf~Ke~larlEen~~e~ 120 (192)
T KOG4083|consen 84 KAARLARDLEEKSQELKKQDAFYKEQLARLEENSSEF 120 (192)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444455555443 556699999999999998543
No 114
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=26.69 E-value=63 Score=26.84 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=12.0
Q ss_pred HHhhhhhhhhhhHHHhHHHHHH
Q 019675 247 EKSRLANENASLVRENQCLHQL 268 (337)
Q Consensus 247 EKsrLA~EN~~~arEn~~L~e~ 268 (337)
+=.|.|-||-.+.-||+-|+.+
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 115
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.46 E-value=1.9e+02 Score=26.12 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 019675 201 KSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LRe 223 (337)
+.+---...++++|+++||.|..
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~ 110 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLEL 110 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567889999999999984
No 116
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.39 E-value=2.6e+02 Score=30.15 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 019675 191 ATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASL 258 (337)
Q Consensus 191 kll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~ 258 (337)
.-|..++..+++.|.-.+++|.+|+.+++-|....+. ...+-+.+..|++.+-+.-..|-.+...+
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~--l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEE--LKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777654332 22344444455554444444444444444
No 117
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.35 E-value=1.1e+02 Score=28.96 Aligned_cols=44 Identities=27% Similarity=0.206 Sum_probs=18.1
Q ss_pred hhhhhhhhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhcccccccCCC
Q 019675 251 LANENASLVRENQCLHQLVEYHQLTSQDLSASYEEFIQGMYLDFSSPS 298 (337)
Q Consensus 251 LA~EN~~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg~~ld~Ssp~ 298 (337)
|-.|++.|..||.-|.+|++- .|-+++-+|.++..-+=+|-+|-
T Consensus 137 ~~eEi~~lk~en~~L~elae~----~~~la~~ie~l~~~~~~~~e~~~ 180 (200)
T PF07412_consen 137 KDEEIAKLKEENEELKELAEH----VQYLAEVIERLTGQELDNLESLD 180 (200)
T ss_dssp HHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccCcccccCcc
Confidence 334455555666666666652 23355556666644444444443
No 118
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.32 E-value=3.7e+02 Score=25.94 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccc
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVK 227 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~k 227 (337)
=.||+..+..++.-+++|...||.|...|.+-.++
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999876654
No 119
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila.; GO: 0004984 olfactory receptor activity, 0005549 odorant binding, 0007608 sensory perception of smell, 0016020 membrane
Probab=26.22 E-value=71 Score=27.70 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHhhhhc
Q 019675 262 NQCLHQLVEYHQLTSQDLSASYEEFIQG 289 (337)
Q Consensus 262 n~~L~e~veyhQlt~Qdv~e~~Eev~eg 289 (337)
.+.|++++++||...+ .++..++...+
T Consensus 172 ~~~L~~~I~~H~~ll~-~~~~l~~~~~~ 198 (313)
T PF02949_consen 172 REELKECIKRHQRLLR-FVEKLEDIFSP 198 (313)
T ss_pred HHHHHHHHhhhcchhh-hhhhhhhccch
Confidence 7889999999998774 33455555443
No 120
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=26.17 E-value=93 Score=23.88 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred HHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 243 ALLAEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 243 ~LlaEKsrLA~EN~~~arEn~~L~e~v 269 (337)
..|-+++.|-+|+..+.++|.-||-|+
T Consensus 30 ~vL~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 30 KVLLDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888888775
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.02 E-value=5.3e+02 Score=23.81 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=9.0
Q ss_pred HhhhhhhhhhhhhHHhhhhcc
Q 019675 270 EYHQLTSQDLSASYEEFIQGM 290 (337)
Q Consensus 270 eyhQlt~Qdv~e~~Eev~eg~ 290 (337)
+-.+-+.+.++..+.+++...
T Consensus 94 ~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 94 EQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 122
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.37 E-value=2.4e+02 Score=26.67 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 198 KSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 198 Ktvksdl~f~~~RcaqLEEENk~LRe 223 (337)
|+|+..|.-+|.=|.-|||+|+.|=.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667778888888887753
No 123
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=25.22 E-value=41 Score=32.75 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019675 176 MKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEEN 218 (337)
Q Consensus 176 LKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEEN 218 (337)
|=-+.|.|+.||-|| |+|.+-+ .+...|+++||+|.
T Consensus 185 IGGt~d~aa~LaK~A--llr~ig~-----~n~d~~~a~lE~el 220 (273)
T TIGR00722 185 IGGSFETAAKLAKKA--LLRPIGE-----RHPNPKIAKLELEL 220 (273)
T ss_pred eCCCHHHHHHHHHHH--hhhhhcc-----CCCChhHHHHHHHH
Confidence 344667899999988 6777743 34557788888874
No 124
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.41 E-value=2.9e+02 Score=30.20 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHhhhh
Q 019675 207 MQERCTLLEEENRRLRD 223 (337)
Q Consensus 207 ~~~RcaqLEEENk~LRe 223 (337)
.++|..+||.|-++||.
T Consensus 543 ~r~r~~~lE~E~~~lr~ 559 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRR 559 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999999995
No 125
>PF02321 OEP: Outer membrane efflux protein; InterPro: IPR003423 The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm. Examples include the Escherichia coli TolC outer membrane protein, which is required for proper expression of outer membrane protein genes; the Rhizobium nodulation protein; and the Pseudomonas FusA protein, which is involved in resistance to fusaric acid.; GO: 0005215 transporter activity, 0006810 transport; PDB: 3PIK_A 1YC9_A 3D5K_C 1WP1_B 2XMN_C 2WMZ_B 1EK9_B 2VDD_C 1TQQ_A 2VDE_B ....
Probab=24.25 E-value=3.5e+02 Score=21.10 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 019675 191 ATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANEN 255 (337)
Q Consensus 191 kll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN 255 (337)
+.....+...+..+..+++....+++.-+..+..+..|..+.-| ++..+.+-.-++-.....++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d-~~~a~~~~~~~~~~~~~~~~ 174 (188)
T PF02321_consen 111 KQAYYQLLQAQEQLEIAEEQLELAKEQLEIAEKRYEAGLISELD-LLQAQAQLLQAQLQLIQAQN 174 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444555556677777777777777777777888888777654 77777766555554444433
No 126
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.07 E-value=6.1e+02 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 019675 191 ATLARELKSIKSDLCFMQERCTLLEEENRRLRDGF 225 (337)
Q Consensus 191 kll~rELKtvksdl~f~~~RcaqLEEENk~LReg~ 225 (337)
.-+.-|++.....|.-+.++...|+++.+.+.+-.
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea 49 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEELEEKLKQAEEEA 49 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777778888888999999999999988643
No 127
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=23.62 E-value=5.1e+02 Score=26.73 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhh
Q 019675 197 LKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRL 251 (337)
Q Consensus 197 LKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrL 251 (337)
|+.++.+|.-.++.+.+|++....|++-+.+ | +...+++|-.||-|.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~-------e-~~~~~~~LqEEr~R~ 260 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQR-------E-YQFILEALQEERYRY 260 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHhHHHH
Confidence 3444444444455556666666666653332 1 234555666665553
No 128
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.60 E-value=5.3e+02 Score=23.00 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
..+||.+++.-+..+.|.--||-+..+..+.
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 4455566665555666665555554444443
No 129
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.58 E-value=83 Score=25.07 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=33.8
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 178 KAKNLAISMA------TKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 178 aSRdVA~amA------~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
.++||..++. .||+.+.++|--|-..++--.+.+..||+++++.|+
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~ 73 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKRE 73 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3556655554 366677777777777788888888999998888775
No 130
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.55 E-value=1.3e+02 Score=26.52 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhccccCCC----CChhHHHHHHHHHHHHHH-hhhhhhhhhhHHHhHHHHHHHHhhhhhhhh
Q 019675 204 LCFMQERCTLLEEENRRLRDGFVKGIR----PEEDDLVRLQLEALLAEK-SRLANENASLVRENQCLHQLVEYHQLTSQD 278 (337)
Q Consensus 204 l~f~~~RcaqLEEENk~LReg~~kG~~----pedDDLvR~QlE~LlaEK-srLA~EN~~~arEn~~L~e~veyhQlt~Qd 278 (337)
+.-+..++++|+=|||-|+...-.|.. |.|.-|---|=|.++.-= ++|.. .|.-..|-+.-..+ =.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss-~A~~KIe~kVr~~t--------~~ 75 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSS-QASKKIEAKVRKLT--------AK 75 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------hh
Confidence 344567899999999999986555554 777778888888877532 23322 22223333322221 12
Q ss_pred hh--hhHHhhhhcc--cccccCC
Q 019675 279 LS--ASYEEFIQGM--YLDFSSP 297 (337)
Q Consensus 279 v~--e~~Eev~eg~--~ld~Ssp 297 (337)
++ +.+|+++.+. +||||--
T Consensus 76 ~vTk~e~~e~l~~l~~Ri~vSm~ 98 (118)
T PF05812_consen 76 LVTKEEIEEALKNLTIRIDVSMD 98 (118)
T ss_dssp --BHHHHHHHHHT-EEEEEEEGG
T ss_pred hccHHHHHHHHhcceeeEEEeec
Confidence 23 6778888875 7898743
No 131
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.32 E-value=3.1e+02 Score=20.26 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
|..++..+.....-++.++..|..++..|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 132
>PF05233 PHB_acc: PHB accumulation regulatory domain; InterPro: IPR007897 The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria, for example the production of poly-beta-hydroxybutyrate (PHB) which is formed via the polymerisation of D(-)-3-hydroxybutyryl-CoA []. The function of this domain is unknown.
Probab=23.29 E-value=77 Score=22.83 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHh
Q 019675 262 NQCLHQLVEYHQLTSQDLSASYEE 285 (337)
Q Consensus 262 n~~L~e~veyhQlt~Qdv~e~~Ee 285 (337)
+.+|++++-|..-+||.++.+|=|
T Consensus 3 ~~~L~qlIrfyg~~mQ~~m~~YLE 26 (41)
T PF05233_consen 3 TEFLRQLIRFYGPSMQGMMGSYLE 26 (41)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHH
Confidence 468999999999999999976643
No 133
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=22.86 E-value=3.4e+02 Score=23.91 Aligned_cols=56 Identities=29% Similarity=0.381 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHhhh------hccccCCCCChhHHHHHHHH
Q 019675 187 ATKAATLARELKSIKSDLC-----------FMQERCTLLEEENRRLR------DGFVKGIRPEEDDLVRLQLE 242 (337)
Q Consensus 187 A~KAkll~rELKtvksdl~-----------f~~~RcaqLEEENk~LR------eg~~kG~~pedDDLvR~QlE 242 (337)
..+-..|.+|++.+|.|+- ++-+|.-.|.+.-..|- .+...++.|=-||..|.||-
T Consensus 7 ~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~rwklm 79 (112)
T PF07439_consen 7 HQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVKRWKLM 79 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHHHHHHh
Confidence 4556679999999988885 44555556666655553 23445778888999988873
No 134
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.84 E-value=4.9e+02 Score=27.52 Aligned_cols=63 Identities=30% Similarity=0.386 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhhhh
Q 019675 199 SIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQLTS 276 (337)
Q Consensus 199 tvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQlt~ 276 (337)
.|+.+|.-+++=.++|||--.+|.+-+.+ | +-.-+|+|-.|+-| |.|=-.-|.+++|.||--+
T Consensus 264 aileeL~eIk~~q~~Leesye~Lke~~kr-------d-y~fi~etLQEERyR-------~erLEEqLNdlteLqQnEi 326 (455)
T KOG3850|consen 264 AILEELREIKETQALLEESYERLKEQIKR-------D-YKFIAETLQEERYR-------YERLEEQLNDLTELQQNEI 326 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHH
Confidence 34444444455566777777777765443 1 23457888777765 4444455666666666544
No 135
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.67 E-value=1.5e+02 Score=21.75 Aligned_cols=30 Identities=37% Similarity=0.370 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
-+.|-+.=..|+.+|..+..||..|+.-|.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777776554
No 136
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.66 E-value=4.2e+02 Score=23.89 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCC-hhHHHHHHHHHHHH
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPE-EDDLVRLQLEALLA 246 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pe-dDDLvR~QlE~Lla 246 (337)
++...++++.-++....+++.+.+++++-+.+|.... +-+..+.+++.+-+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~ 116 (322)
T TIGR01730 65 ALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQA 116 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Confidence 3444455566666666677777777777666666554 33444555554433
No 137
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.43 E-value=6.7e+02 Score=27.16 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCC------CCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHH
Q 019675 189 KAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGI------RPEEDD-LVRLQLEALLAEKSRLANENASLVRE 261 (337)
Q Consensus 189 KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~------~pedDD-LvR~QlE~LlaEKsrLA~EN~~~arE 261 (337)
|-.-|.-|+.++|....-...|...||.....|+.-...-. .|.+.+ =..-.+++|..|+.+|+.......++
T Consensus 30 r~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ 109 (617)
T PF15070_consen 30 RMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVEN 109 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446777888888888888888888888888874322211 122333 34556788999999999888888888
Q ss_pred hHHHHHHH
Q 019675 262 NQCLHQLV 269 (337)
Q Consensus 262 n~~L~e~v 269 (337)
|..|..++
T Consensus 110 ne~Ls~L~ 117 (617)
T PF15070_consen 110 NEQLSRLN 117 (617)
T ss_pred HHHHHHHH
Confidence 88887664
No 138
>PF15058 Speriolin_N: Speriolin N terminus
Probab=22.41 E-value=1.3e+02 Score=28.76 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHH
Q 019675 237 VRLQLEALLAEKSRLANENASLVRENQCLHQL 268 (337)
Q Consensus 237 vR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~ 268 (337)
.|+|+|+|+.|-++|-+- -.+-|||+-|+-+
T Consensus 10 lrhqierLv~ENeeLKKl-VrLirEN~eLksa 40 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKL-VRLIRENHELKSA 40 (200)
T ss_pred HHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHH
Confidence 589999888655554432 2345666666665
No 139
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.41 E-value=3.8e+02 Score=30.86 Aligned_cols=58 Identities=31% Similarity=0.386 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhh
Q 019675 188 TKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANE 254 (337)
Q Consensus 188 ~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~E 254 (337)
+|....+.=|+.+|.+|+-+..+.++|+.+..-+++..-. --.||++++.+|-||+.|
T Consensus 487 ~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~---------~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 487 TKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNN---------QLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHHHHHHHHhhHHHHHH
Confidence 4666667778888999999999999999987777764321 126789999999988754
No 140
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.37 E-value=29 Score=36.73 Aligned_cols=63 Identities=29% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 207 MQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 207 ~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
.++|+..||-||++||....... .+.--.+..+|+.+-..|.+|-.+|.........|+.=|+
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~-~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle 519 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESE-EEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLE 519 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999986543211 1111124566777777788888887766655555644343
No 141
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.20 E-value=1.4e+02 Score=27.28 Aligned_cols=20 Identities=40% Similarity=0.366 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019675 199 SIKSDLCFMQERCTLLEEEN 218 (337)
Q Consensus 199 tvksdl~f~~~RcaqLEEEN 218 (337)
.+-+-|--|-||-|.||+|.
T Consensus 4 D~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34445556667777777664
No 142
>PRK14127 cell division protein GpsB; Provisional
Probab=21.65 E-value=1.7e+02 Score=25.20 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHH
Q 019675 236 LVRLQLEALLAEKSRLANENASLVRE 261 (337)
Q Consensus 236 LvR~QlE~LlaEKsrLA~EN~~~arE 261 (337)
.|-..+|+|..|..+|..||..+..+
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQ 59 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556555555555555544443
No 143
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=21.07 E-value=1.1e+02 Score=29.57 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRR 220 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~ 220 (337)
..|++.+|..++-..+|+-.|||||+.
T Consensus 194 ~~~~~~lrrQi~klnrRl~~lE~~n~~ 220 (246)
T PF05644_consen 194 VVDAASLRRQIIKLNRRLQALEEENKE 220 (246)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHH
Confidence 446667888899999999999999975
No 144
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.99 E-value=3.8e+02 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
....+..++.-++....+|++||..|+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777777777764
No 145
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.79 E-value=1.6e+02 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHhhhh
Q 019675 204 LCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 204 l~f~~~RcaqLEEENk~LRe 223 (337)
+.-.+..+++|+.||..|++
T Consensus 80 i~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345556677777777765
No 146
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.37 E-value=3.2e+02 Score=24.12 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HH-----HHHHHHHHHHhHhhhhc
Q 019675 185 SMATKAATLARELKSIKSDLC-------FM-----QERCTLLEEENRRLRDG 224 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~-------f~-----~~RcaqLEEENk~LReg 224 (337)
..+.+-+.|++|++.+|.++. || ++++.+|++|.+.+.+.
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777776663 44 46777777777766543
No 147
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.26 E-value=4.8e+02 Score=22.91 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 173 DKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 173 e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
+-+|.....+.-.|..+..-+.+.+..++.|+...+.....||--...|.+
T Consensus 74 d~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 74 DDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444667777777788888889999999999999999999999987766654
Done!