Query 019675
Match_columns 337
No_of_seqs 48 out of 50
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s9g_A Protein hexim1; cyclin 85.5 1 3.5E-05 37.4 4.8 51 207-266 42-92 (104)
2 3q8t_A Beclin-1; autophagy, AT 84.4 8 0.00027 30.7 9.4 64 192-271 8-72 (96)
3 3s4r_A Vimentin; alpha-helix, 72.6 4.5 0.00015 32.0 4.5 69 197-266 11-90 (93)
4 3ghg_C Fibrinogen gamma chain; 69.0 64 0.0022 31.8 12.6 99 190-288 26-133 (411)
5 1dip_A Delta-sleep-inducing pe 67.4 1.9 6.6E-05 34.2 1.3 31 194-224 14-44 (78)
6 3a7p_A Autophagy protein 16; c 66.6 31 0.0011 30.1 8.9 64 192-259 65-130 (152)
7 3a7p_A Autophagy protein 16; c 65.9 29 0.001 30.3 8.5 42 180-221 85-129 (152)
8 1ci6_A Transcription factor AT 61.3 18 0.00061 26.6 5.5 35 189-223 24-58 (63)
9 1jnm_A Proto-oncogene C-JUN; B 56.8 10 0.00035 27.5 3.5 32 241-272 31-62 (62)
10 2oxj_A Hybrid alpha/beta pepti 52.0 12 0.00039 25.8 2.9 16 241-256 10-25 (34)
11 3kin_B Kinesin heavy chain; mo 51.9 22 0.00074 28.9 5.1 31 193-223 87-117 (117)
12 4aj5_K Spindle and kinetochore 51.1 18 0.00061 30.8 4.5 32 193-224 48-79 (123)
13 2yy0_A C-MYC-binding protein; 49.9 21 0.00071 25.8 4.2 31 196-226 20-50 (53)
14 2jee_A YIIU; FTSZ, septum, coi 49.0 32 0.0011 27.2 5.4 29 239-267 27-62 (81)
15 2dfs_A Myosin-5A; myosin-V, in 47.8 99 0.0034 33.4 10.6 33 194-226 969-1001(1080)
16 1gk7_A Vimentin; intermediate 47.0 28 0.00097 23.9 4.3 29 195-223 6-34 (39)
17 2oqq_A Transcription factor HY 47.0 32 0.0011 24.6 4.6 22 202-223 17-38 (42)
18 2v4h_A NF-kappa-B essential mo 45.4 1E+02 0.0035 25.7 8.2 48 209-265 62-109 (110)
19 2wvr_A Geminin; DNA replicatio 42.7 32 0.0011 31.5 5.1 45 251-299 127-171 (209)
20 3hnw_A Uncharacterized protein 40.4 1.6E+02 0.0055 24.5 9.1 63 193-266 66-130 (138)
21 1ci6_A Transcription factor AT 39.7 42 0.0014 24.6 4.5 29 242-270 33-61 (63)
22 4dk0_A Putative MACA; alpha-ha 39.7 1E+02 0.0035 27.3 7.9 55 194-248 76-131 (369)
23 2oqq_A Transcription factor HY 39.6 18 0.00062 25.8 2.4 20 251-270 22-41 (42)
24 2b9c_A Striated-muscle alpha t 38.7 1.8E+02 0.0061 24.6 9.0 52 172-223 57-108 (147)
25 4etp_A Kinesin-like protein KA 36.1 55 0.0019 31.3 5.9 37 187-223 2-38 (403)
26 3oja_B Anopheles plasmodium-re 36.0 2.7E+02 0.0094 26.3 10.6 24 201-224 508-531 (597)
27 1gu4_A CAAT/enhancer binding p 32.0 1.5E+02 0.0052 22.8 6.8 15 208-222 42-56 (78)
28 2w83_C C-JUN-amino-terminal ki 29.4 34 0.0012 27.1 2.7 30 192-221 48-77 (77)
29 3na7_A HP0958; flagellar bioge 29.1 3E+02 0.01 24.2 9.2 85 195-291 90-174 (256)
30 3hnw_A Uncharacterized protein 28.0 2.6E+02 0.009 23.2 9.7 40 185-224 79-118 (138)
31 2dfs_A Myosin-5A; myosin-V, in 27.8 3.4E+02 0.012 29.3 10.8 27 194-220 976-1002(1080)
32 2hy6_A General control protein 27.8 70 0.0024 22.0 3.7 19 251-269 13-31 (34)
33 2x5c_A Hypothetical protein OR 27.6 57 0.002 27.3 3.9 26 193-218 96-121 (131)
34 2dgc_A Protein (GCN4); basic d 27.2 61 0.0021 23.8 3.6 28 242-269 33-60 (63)
35 2bni_A General control protein 27.2 40 0.0014 23.1 2.4 16 241-256 10-25 (34)
36 3u1c_A Tropomyosin alpha-1 cha 27.0 2.3E+02 0.0078 22.2 9.7 22 245-266 74-99 (101)
37 3cl3_D NF-kappa-B essential mo 26.9 41 0.0014 28.8 3.0 89 188-280 2-100 (130)
38 2j5u_A MREC protein; bacterial 25.5 47 0.0016 29.8 3.3 21 241-261 38-58 (255)
39 3qne_A Seryl-tRNA synthetase, 25.4 91 0.0031 31.1 5.6 43 179-221 60-104 (485)
40 1hjb_A Ccaat/enhancer binding 25.3 1E+02 0.0036 24.2 4.9 26 195-222 31-56 (87)
41 2w6a_A ARF GTPase-activating p 24.8 2.3E+02 0.0078 21.7 6.4 51 194-260 12-62 (63)
42 2wg5_A General control protein 24.6 53 0.0018 26.2 3.1 27 197-223 9-35 (109)
43 1i84_S Smooth muscle myosin he 24.5 1.9E+02 0.0066 30.9 8.2 26 196-221 865-890 (1184)
44 3c3f_A Alpha/beta peptide with 23.8 63 0.0022 22.2 2.9 15 241-255 10-24 (34)
45 2b9c_A Striated-muscle alpha t 23.7 1.4E+02 0.0049 25.2 5.7 38 185-222 77-114 (147)
46 1gd2_E Transcription factor PA 23.5 94 0.0032 23.6 4.1 13 210-222 44-56 (70)
47 1kd8_A GABH AIV, GCN4 acid bas 23.5 60 0.0021 22.5 2.7 17 241-257 10-26 (36)
48 1t2k_D Cyclic-AMP-dependent tr 23.4 1.2E+02 0.0041 21.6 4.5 29 241-269 31-59 (61)
49 1go4_E MAD1 (mitotic arrest de 23.2 3E+02 0.01 22.3 7.6 60 201-269 11-91 (100)
50 3jsv_C NF-kappa-B essential mo 23.0 3E+02 0.01 22.3 8.4 63 195-266 26-88 (94)
51 1jnm_A Proto-oncogene C-JUN; B 22.5 1.1E+02 0.0038 21.9 4.2 30 193-222 27-56 (62)
52 1ik9_A DNA repair protein XRCC 22.0 1.5E+02 0.005 26.5 5.7 49 206-265 136-184 (213)
53 2wt7_B Transcription factor MA 21.7 1.1E+02 0.0039 24.4 4.5 39 211-265 50-88 (90)
54 3u06_A Protein claret segregat 21.6 1.6E+02 0.0055 28.4 6.3 23 199-221 7-29 (412)
55 1wle_A Seryl-tRNA synthetase; 21.2 2.1E+02 0.0071 28.4 7.2 32 190-221 118-149 (501)
56 1t2k_D Cyclic-AMP-dependent tr 21.1 1.5E+02 0.0051 21.1 4.6 30 193-222 27-56 (61)
57 1dh3_A Transcription factor CR 21.0 67 0.0023 23.1 2.7 23 246-268 29-51 (55)
58 1t6f_A Geminin; coiled-coil, c 20.5 1.8E+02 0.0063 20.2 4.7 30 194-223 6-35 (37)
59 3pe0_A Plectin; cytoskeleton, 20.1 4.7E+02 0.016 23.4 10.0 74 193-274 46-119 (283)
No 1
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.53 E-value=1 Score=37.39 Aligned_cols=51 Identities=29% Similarity=0.346 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 019675 207 MQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLH 266 (337)
Q Consensus 207 ~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~ 266 (337)
.-.|..+||+||++||--.... -.+++.|-+|--||--||..+.+||..-+
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~---------~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRL---------DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999642211 25677888888888888888777776544
No 2
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.40 E-value=8 Score=30.68 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH-hHHHHHHHH
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRE-NQCLHQLVE 270 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arE-n~~L~e~ve 270 (337)
.|..||+.++.+=+-+.+.+..||.|...| ..+|+++-+|..+|-++-..|-|| |-|-+++++
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l----------------~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e 71 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVV----------------AENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 478889999888888888888888887665 477999999999998888888777 556666655
Q ss_pred h
Q 019675 271 Y 271 (337)
Q Consensus 271 y 271 (337)
|
T Consensus 72 ~ 72 (96)
T 3q8t_A 72 L 72 (96)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.63 E-value=4.5 Score=31.96 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc----cccCCCCChhHH-------HHHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 019675 197 LKSIKSDLCFMQERCTLLEEENRRLRDG----FVKGIRPEEDDL-------VRLQLEALLAEKSRLANENASLVRENQCL 265 (337)
Q Consensus 197 LKtvksdl~f~~~RcaqLEEENk~LReg----~~kG~~pedDDL-------vR~QlE~LlaEKsrLA~EN~~~arEn~~L 265 (337)
|+++=.-||-=-++.-.||.+|+.|.-. ..+|. +...++ .|.|++.+-.||+||.-|-.+++.+...|
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~-~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK-SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455566677777777521 11111 112222 46788888888888888777776665554
Q ss_pred H
Q 019675 266 H 266 (337)
Q Consensus 266 ~ 266 (337)
+
T Consensus 90 k 90 (93)
T 3s4r_A 90 R 90 (93)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=69.01 E-value=64 Score=31.78 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhccccCCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 019675 190 AATLARELKSIKSDLCFMQERCTLLE-------EENRRLRDGFVKGIR--PEEDDLVRLQLEALLAEKSRLANENASLVR 260 (337)
Q Consensus 190 Akll~rELKtvksdl~f~~~RcaqLE-------EENk~LReg~~kG~~--pedDDLvR~QlE~LlaEKsrLA~EN~~~ar 260 (337)
|..|++=-++||.||..++..+.+|+ +=-+.|++...+-.+ |.-.|.|-.-=...|.|+.|+..=..+...
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677788899999999999988885 445667776544433 333466666666789999999555555666
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhHHhhhh
Q 019675 261 ENQCLHQLVEYHQLTSQDLSASYEEFIQ 288 (337)
Q Consensus 261 En~~L~e~veyhQlt~Qdv~e~~Eev~e 288 (337)
..+.|+.+++-..-.+|+|.....+..+
T Consensus 106 ~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999988777777777765555544
No 5
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.39 E-value=1.9 Score=34.21 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
.+|...+|..+.-..+|..|||-||..||..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677778888888888899999998864
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.58 E-value=31 Score=30.12 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHH--HHhhhhhhhhhhH
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLA--EKSRLANENASLV 259 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~Lla--EKsrLA~EN~~~a 259 (337)
.+...+..+++++.-.+.||.+|++|.+--....+. =-|.++-+||+.-++ ...+|-.||..+.
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~----l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTER----LNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999986544432221 135666666665444 4568899998775
No 7
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=65.94 E-value=29 Score=30.30 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 180 KNLAISMATKAAT---LARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 180 RdVA~amA~KAkl---l~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
+++...+..|.|+ |.-|+-++...+.-+.++...|++||+.|
T Consensus 85 ~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 85 RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666654 45677777777777777888888877765
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.30 E-value=18 Score=26.60 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 189 KAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 189 KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
+..-|..+.+.++.+-.-.+.+++.|+.|+..|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888888888888888874
No 9
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.83 E-value=10 Score=27.50 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhh
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLVEYH 272 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~veyh 272 (337)
.+.|-.+...|..+-..+..|+..|+++|.-|
T Consensus 31 v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H 62 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLREQVAQLKQKVMNH 62 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555666666677777777777777777655
No 10
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=52.02 E-value=12 Score=25.83 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhhhhh
Q 019675 241 LEALLAEKSRLANENA 256 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~ 256 (337)
.|.|+++|+-|.+|..
T Consensus 10 VEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHH
Confidence 5667777766666554
No 11
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=51.89 E-value=22 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
|.+++...+..+...++++++||+|..+.|+
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566667777788889999999999999884
No 12
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=51.14 E-value=18 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
|+.|||.||++.+-.+.||..|.-|-|.+-++
T Consensus 48 Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ 79 (123)
T 4aj5_K 48 LLKELSVIKSRYQTLYARFKPVAVEQKESKSR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998888776654
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.89 E-value=21 Score=25.84 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRLRDGFV 226 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~LReg~~ 226 (337)
+.-.+|.++...+.||..|.++|..|+....
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777778888888888888876443
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.03 E-value=32 Score=27.23 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhhhhh-------hHHHhHHHHH
Q 019675 239 LQLEALLAEKSRLANENAS-------LVRENQCLHQ 267 (337)
Q Consensus 239 ~QlE~LlaEKsrLA~EN~~-------~arEn~~L~e 267 (337)
+-+|.|-.+...|++||.. +.+||.-|++
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555555555554 4555555544
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=47.81 E-value=99 Score=33.37 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDGFV 226 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg~~ 226 (337)
+.+|+....++.-++.++..|++|+..||+-.+
T Consensus 969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777888888888888888876543
No 16
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=47.05 E-value=28 Score=23.88 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 195 RELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 195 rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
.+|+++-.-||.--+|+..||.+|++|..
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~ 34 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888999999999999863
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=47.02 E-value=32 Score=24.57 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh
Q 019675 202 SDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 202 sdl~f~~~RcaqLEEENk~LRe 223 (337)
.-.+-..+|+..|+-||-|||.
T Consensus 17 ~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3344557899999999999995
No 18
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.42 E-value=1e+02 Score=25.70 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 019675 209 ERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCL 265 (337)
Q Consensus 209 ~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L 265 (337)
+++.-|+.....-|+-|.. =|.-=|.+..||.+|+.+++.+-|+|.-|
T Consensus 62 E~I~vLkaQv~IY~~DF~a---------ERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQA---------ERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcc---------chhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4777777777777766553 24556888899999999998888887643
No 19
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.75 E-value=32 Score=31.50 Aligned_cols=45 Identities=27% Similarity=0.218 Sum_probs=26.4
Q ss_pred hhhhhhhhHHHhHHHHHHHHhhhhhhhhhhhhHHhhhhcccccccCCCC
Q 019675 251 LANENASLVRENQCLHQLVEYHQLTSQDLSASYEEFIQGMYLDFSSPSS 299 (337)
Q Consensus 251 LA~EN~~~arEn~~L~e~veyhQlt~Qdv~e~~Eev~eg~~ld~Ssp~~ 299 (337)
|-.|++.|.-||.-|++|++- .|++++-+++++.+-+=+|-+|-+
T Consensus 127 l~eEi~~LkeEn~eLkeLae~----~q~la~vi~~l~~~~~~~~e~~~~ 171 (209)
T 2wvr_A 127 KDNEIARLKKENKELAEVAEH----VQYMAELIERLNGEPLDNFESLDN 171 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCcccccCchh
Confidence 344566666777888888885 578999999999988888877743
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.38 E-value=1.6e+02 Score=24.55 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHH--HHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVR--LQLEALLAEKSRLANENASLVRENQCLH 266 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR--~QlE~LlaEKsrLA~EN~~~arEn~~L~ 266 (337)
+.-||-..+....-.......+++|+-.|+. +||. .++|.+..|...|..+|..+-+++.-|.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~-----------el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKH-----------ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666667777777777764 3443 4566777777777777777777666664
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.73 E-value=42 Score=24.58 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhhhhhhHHHhHHHHHHHH
Q 019675 242 EALLAEKSRLANENASLVRENQCLHQLVE 270 (337)
Q Consensus 242 E~LlaEKsrLA~EN~~~arEn~~L~e~ve 270 (337)
+.|-.+-..|..+-+.+..|+.+|++|+.
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444555667778888888763
No 22
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.73 E-value=1e+02 Score=27.31 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCC-hhHHHHHHHHHHHHHH
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPE-EDDLVRLQLEALLAEK 248 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pe-dDDLvR~QlE~LlaEK 248 (337)
..+|...+++|.-++.+..+.+.+.++++.-+.+|.-.. +=|-.+.+++...++.
T Consensus 76 ~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~ 131 (369)
T 4dk0_A 76 KAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEM 131 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 345666677777788888877888888888777777554 4455566665555443
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.61 E-value=18 Score=25.84 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=15.8
Q ss_pred hhhhhhhhHHHhHHHHHHHH
Q 019675 251 LANENASLVRENQCLHQLVE 270 (337)
Q Consensus 251 LA~EN~~~arEn~~L~e~ve 270 (337)
|-+--+.+.+||+.||+++.
T Consensus 22 LEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 22 LEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhc
Confidence 44455788999999999985
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.74 E-value=1.8e+02 Score=24.57 Aligned_cols=52 Identities=33% Similarity=0.374 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 172 KDKIMKKAKNLAISMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 172 ~e~qLKaSRdVA~amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
.+.|||.++.+|-..-.|..=+.|=|+-+-.||.-+.+|+...|...+-|.+
T Consensus 57 lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEe 108 (147)
T 2b9c_A 57 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 108 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999887777777777777777777777766665555555543
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.13 E-value=55 Score=31.32 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 187 ATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 187 A~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
|+|...|..|++.++..+.-.++.+.+|+++++.|.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567777777777777777777777777666543
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.01 E-value=2.7e+02 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 201 KSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LReg 224 (337)
+..+...++|.+.+|.++.++++.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHh
Confidence 444555566666666666665543
No 27
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.98 E-value=1.5e+02 Score=22.83 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHhhh
Q 019675 208 QERCTLLEEENRRLR 222 (337)
Q Consensus 208 ~~RcaqLEEENk~LR 222 (337)
..|+..|+.||..||
T Consensus 42 ~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 42 QHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666555
No 28
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.38 E-value=34 Score=27.08 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 192 TLARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 192 ll~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
.|.-||.+++.-...++.|...||+|-|++
T Consensus 48 ~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 48 VLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466788888888888888899999988764
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.06 E-value=3e+02 Score=24.21 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhhhh
Q 019675 195 RELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYHQL 274 (337)
Q Consensus 195 rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyhQl 274 (337)
||+..+..++.+++.|...||++...+-+..+ ..-+.+-.-+.+|+.--..+.....-+.+.+.=-+-
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie------------~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIK------------RKSEKQEDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHhhhhccc
Q 019675 275 TSQDLSASYEEFIQGMY 291 (337)
Q Consensus 275 t~Qdv~e~~Eev~eg~~ 291 (337)
..+.+..--+++..+++
T Consensus 158 e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 158 TQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcCC
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.96 E-value=2.6e+02 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LReg 224 (337)
.+-..-+-+.+|+..+|.+|.-++..+..++.|+..|++-
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567777788899999998888888888887753
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.82 E-value=3.4e+02 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRR 220 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~ 220 (337)
..|++..+..+.-.++..+.|+++...
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433343344444444443333
No 32
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.76 E-value=70 Score=21.96 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=10.3
Q ss_pred hhhhhhhhHHHhHHHHHHH
Q 019675 251 LANENASLVRENQCLHQLV 269 (337)
Q Consensus 251 LA~EN~~~arEn~~L~e~v 269 (337)
|.++|..++-|-.-|+++|
T Consensus 13 Ll~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 13 LASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 4444444455555566665
No 33
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=27.55 E-value=57 Score=27.31 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEEN 218 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEEN 218 (337)
++.||-.||.||.+...|....|||-
T Consensus 96 ilkelcevkkdleyvlkrykeyeeeg 121 (131)
T 2x5c_A 96 ILKELCEVKKDLEYVLKRYKEYEEEG 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 58999999999999999999999873
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.24 E-value=61 Score=23.84 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 242 EALLAEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 242 E~LlaEKsrLA~EN~~~arEn~~L~e~v 269 (337)
+.|-.+=..|-.||+.+..|...|++.|
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444567777777777777655
No 35
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.23 E-value=40 Score=23.14 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhhhhh
Q 019675 241 LEALLAEKSRLANENA 256 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~ 256 (337)
+|.||.+|+-|.+|=+
T Consensus 10 vEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 10 LEEILSKGHHICNELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHH
Confidence 6777877777766543
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.01 E-value=2.3e+02 Score=22.23 Aligned_cols=22 Identities=36% Similarity=0.179 Sum_probs=14.6
Q ss_pred HHHHhhhhh----hhhhhHHHhHHHH
Q 019675 245 LAEKSRLAN----ENASLVRENQCLH 266 (337)
Q Consensus 245 laEKsrLA~----EN~~~arEn~~L~ 266 (337)
|.+..+.+. |+++|.|=++.|-
T Consensus 74 Lee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 74 LLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555 8888888877664
No 37
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.90 E-value=41 Score=28.83 Aligned_cols=89 Identities=28% Similarity=0.282 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhhhhccc--cCCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 019675 188 TKAATLARELKSIKSDLCFM-------QERCTLLEEENRRLRDGFV--KGIRPEEDDLVRLQLEALLAEKSRLANENASL 258 (337)
Q Consensus 188 ~KAkll~rELKtvksdl~f~-------~~RcaqLEEENk~LReg~~--kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~ 258 (337)
+++..|.-||..-.+-|.-| ++||--||+.++.+-.-.+ +-.-.-.-|-.|+|++.+-++ |--|-..-
T Consensus 2 ~~vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaa---lkmEr~~~ 78 (130)
T 3cl3_D 2 HMASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAA---LRMERQAA 78 (130)
T ss_dssp -------------------------------------------------CTTTHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 46677888888876666544 6788888888887743221 111223557778998877553 22233333
Q ss_pred HHHhHHHHHH-HHhhhhhhhhhh
Q 019675 259 VRENQCLHQL-VEYHQLTSQDLS 280 (337)
Q Consensus 259 arEn~~L~e~-veyhQlt~Qdv~ 280 (337)
.-|.+-|-+| +-||+| .||--
T Consensus 79 ~eEKrkLAqLQ~AY~~L-fqeYd 100 (130)
T 3cl3_D 79 SEEKRKLAQLQVAYHQL-FQEYD 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH
Confidence 3345555554 566666 45543
No 38
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.51 E-value=47 Score=29.85 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHH
Q 019675 241 LEALLAEKSRLANENASLVRE 261 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arE 261 (337)
|+..+++-..|.+||..|..-
T Consensus 38 l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455544443
No 39
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.39 E-value=91 Score=31.08 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 179 AKNLAISMATK--AATLARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 179 SRdVA~amA~K--Akll~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
|+.++..++.+ +.-|..|++.||.+|.-+.+....||++...+
T Consensus 60 sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 60 QKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444332 45688899999999999999999999887433
No 40
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.32 E-value=1e+02 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 195 RELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 195 rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
|+=+..|.+ -...|+..||.||..||
T Consensus 31 R~krk~r~~--e~~~r~~~Le~EN~~Lr 56 (87)
T 1hjb_A 31 RDKAKMRNL--ETQHKVLELTAENERLQ 56 (87)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444444443 34678888888888776
No 41
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.81 E-value=2.3e+02 Score=21.68 Aligned_cols=51 Identities=29% Similarity=0.365 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVR 260 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~ar 260 (337)
..|.-.||..|+.+..|+.||=.=|--|-+ .|-++| .+-.+|..||+++++
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~-----------Elr~mQ-----~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSD-----------ELRKLQ-----REIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhH-----------HHHHHH-----HHHHHHHhhhhhhcc
Confidence 356667888888888888887666655532 222222 334567777777654
No 42
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.64 E-value=53 Score=26.18 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 197 LKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 197 LKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
+|.+++.+..+++++..|++|+++|+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466777777778888899999999996
No 43
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.47 E-value=1.9e+02 Score=30.94 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 196 ELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 196 ELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
||+.++..|.-....+..|+++...|
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433433333333333
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.79 E-value=63 Score=22.19 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhhhh
Q 019675 241 LEALLAEKSRLANEN 255 (337)
Q Consensus 241 lE~LlaEKsrLA~EN 255 (337)
.|.|+.+|+-|.+|=
T Consensus 10 VEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 10 LEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHH
Confidence 567777777666553
No 45
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.74 E-value=1.4e+02 Score=25.18 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 185 SMATKAATLARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 185 amA~KAkll~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
-++.|.+.+-.+|.....-+..+-.+|..||++.+.+=
T Consensus 77 E~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 77 EVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667799999888888899999999999988653
No 46
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.53 E-value=94 Score=23.62 Aligned_cols=13 Identities=31% Similarity=0.233 Sum_probs=6.1
Q ss_pred HHHHHHHHhHhhh
Q 019675 210 RCTLLEEENRRLR 222 (337)
Q Consensus 210 RcaqLEEENk~LR 222 (337)
-...|..||..||
T Consensus 44 ~~~~l~~en~~Lr 56 (70)
T 1gd2_E 44 LHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3334445555554
No 47
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.48 E-value=60 Score=22.53 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhhhhh
Q 019675 241 LEALLAEKSRLANENAS 257 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~ 257 (337)
.|.|+.+|+-|.+|=+.
T Consensus 10 VEeLl~~~~~Le~EV~R 26 (36)
T 1kd8_A 10 VEEIESEVWHLENEVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 56677777777665443
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.36 E-value=1.2e+02 Score=21.62 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 019675 241 LEALLAEKSRLANENASLVRENQCLHQLV 269 (337)
Q Consensus 241 lE~LlaEKsrLA~EN~~~arEn~~L~e~v 269 (337)
.+.|-.+...|..+-..+..|+..|+++|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666666666666654
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.24 E-value=3e+02 Score=22.33 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHH---------------------HHHHHhhhhhhhhhhH
Q 019675 201 KSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEA---------------------LLAEKSRLANENASLV 259 (337)
Q Consensus 201 ksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~---------------------LlaEKsrLA~EN~~~a 259 (337)
...+.-.+.++..||-||.+||+-.. ...++||. .-.-+....++=..|.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~---------~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq 81 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKR---------MLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQ 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHH
Q 019675 260 RENQCLHQLV 269 (337)
Q Consensus 260 rEn~~L~e~v 269 (337)
.||.-||+.|
T Consensus 82 ~E~erLr~~v 91 (100)
T 1go4_E 82 AECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 50
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.00 E-value=3e+02 Score=22.29 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 019675 195 RELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLH 266 (337)
Q Consensus 195 rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~ 266 (337)
.+||.-=+.+....++..-|......-++-|.. =|.-=|.+..||.+|+..+..+-++|.-|.
T Consensus 26 d~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a---------ERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 26 DKLKEEAEQHKIVMETVPVLKAQADIYKADFQA---------ERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344443333444447888888888888876663 355568888888888888888888776554
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.54 E-value=1.1e+02 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
|..+...+.++-.-.+..+.+|.+|+..|+
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555556666655554
No 52
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.01 E-value=1.5e+02 Score=26.46 Aligned_cols=49 Identities=24% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 019675 206 FMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCL 265 (337)
Q Consensus 206 f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L 265 (337)
-++++++.|.+||.+|...+.+ +..|||.+..+|.. +|+..|++=...|
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~---------l~~qlE~~v~~K~~--~E~~L~~KF~~lL 184 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWND---------VQGRFEKAVSAKEA--LETDLYKRFILVL 184 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3456667777777777765542 35899999988874 6888887644444
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.72 E-value=1.1e+02 Score=24.36 Aligned_cols=39 Identities=36% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 019675 211 CTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCL 265 (337)
Q Consensus 211 caqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L 265 (337)
+..||.|+..|. .|++.|..|.+++..|=..|..-..-|
T Consensus 50 ~~~LE~e~~~L~----------------~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 50 KHHLENEKTQLI----------------QQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 54
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.59 E-value=1.6e+02 Score=28.36 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q 019675 199 SIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 199 tvksdl~f~~~RcaqLEEENk~L 221 (337)
+++.+|...++|+.+|+++++.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.17 E-value=2.1e+02 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 190 AATLARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 190 Akll~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
+.-|..|++.||.+|.-+......+|++...+
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999988888888888886443
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.07 E-value=1.5e+02 Score=21.12 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLR 222 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LR 222 (337)
|..+.+.+..+-...+..+.+|.+|+..|+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555554444
No 57
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.95 E-value=67 Score=23.05 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=12.5
Q ss_pred HHHhhhhhhhhhhHHHhHHHHHH
Q 019675 246 AEKSRLANENASLVRENQCLHQL 268 (337)
Q Consensus 246 aEKsrLA~EN~~~arEn~~L~e~ 268 (337)
.+-..|-.||..+..++..|++.
T Consensus 29 ~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 29 NRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666665544
No 58
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.45 E-value=1.8e+02 Score=20.22 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 194 ARELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 194 ~rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
+.|=..+--++.--.+.+|.|-+||..|.+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 455556667788888999999999998876
No 59
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=20.07 E-value=4.7e+02 Score=23.37 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHhh
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRLANENASLVRENQCLHQLVEYH 272 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrLA~EN~~~arEn~~L~e~veyh 272 (337)
+++--+.+.+||..=..|+.++.+.=..|=+..+ ..-+-|+..+++|...-..|-+ ..-.|+. .|.+.+.||
T Consensus 46 ~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~h-----p~~~~I~~r~~~L~~~W~~L~~--l~~~R~~-~L~~a~~~~ 117 (283)
T 3pe0_A 46 KKESYSALMRELELKEKKIKELQNAGDRLLREDH-----PARPTVESFQAALQTQWSWMLQ--LCCCIEA-HLKENAAYF 117 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----TTHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-----CChHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHH
Confidence 3566677778888888888888877776655333 2345688888888777666643 2333332 356666666
Q ss_pred hh
Q 019675 273 QL 274 (337)
Q Consensus 273 Ql 274 (337)
|+
T Consensus 118 qF 119 (283)
T 3pe0_A 118 QF 119 (283)
T ss_dssp HH
T ss_pred HH
Confidence 64
Done!