Query 019675
Match_columns 337
No_of_seqs 48 out of 50
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 05:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019675.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019675hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jn6a1 a.4.1.19 (A:1-89) Unch 38.4 6.4 0.00047 27.9 1.8 16 209-224 66-81 (89)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 27.8 70 0.0051 24.5 6.5 45 179-223 58-105 (129)
3 d1hcia4 a.7.1.1 (A:633-746) al 24.5 40 0.0029 23.6 4.1 33 193-225 42-74 (114)
4 d1kyqa2 e.37.1.1 (A:151-273) B 18.8 1.1E+02 0.0082 23.3 6.0 28 261-288 70-103 (123)
5 d1seta1 a.2.7.1 (A:1-110) Sery 18.1 69 0.005 23.0 4.4 31 191-221 67-97 (110)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 17.6 44 0.0032 22.2 2.9 21 204-224 35-55 (61)
7 d2oa5a1 d.362.1.1 (A:7-102) Un 14.3 56 0.0041 24.8 3.0 80 207-295 7-93 (96)
8 d1ta8a_ d.142.2.2 (A:) Adenyla 13.2 1.2E+02 0.0089 24.9 5.2 45 203-247 3-51 (313)
9 d1sjpa2 c.8.5.1 (A:189-372) Gr 11.1 96 0.007 24.7 3.7 31 184-214 149-181 (184)
10 d1u5pa2 a.7.1.1 (A:1772-1872) 9.6 2.4E+02 0.017 18.3 8.2 56 191-251 34-89 (101)
No 1
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=38.39 E-value=6.4 Score=27.88 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHhhhhc
Q 019675 209 ERCTLLEEENRRLRDG 224 (337)
Q Consensus 209 ~RcaqLEEENk~LReg 224 (337)
+|+..|+.||++||.-
T Consensus 66 ~ei~~L~~En~~Lk~~ 81 (89)
T d2jn6a1 66 EQIRQLKKENALQRAR 81 (89)
T ss_dssp HHHHHHHHCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999999963
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.76 E-value=70 Score=24.53 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 019675 179 AKNLAISMATKAATLA---RELKSIKSDLCFMQERCTLLEEENRRLRD 223 (337)
Q Consensus 179 SRdVA~amA~KAkll~---rELKtvksdl~f~~~RcaqLEEENk~LRe 223 (337)
-+.+|-.++.|||=+- .-|=.+-..=.--..|++.||+||+....
T Consensus 58 ~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~ 105 (129)
T d1ykhb1 58 IDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVED 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776443 33333333333345899999999987664
No 3
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.50 E-value=40 Score=23.64 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 019675 193 LARELKSIKSDLCFMQERCTLLEEENRRLRDGF 225 (337)
Q Consensus 193 l~rELKtvksdl~f~~~RcaqLEEENk~LReg~ 225 (337)
+++-.+.++++|..-+.|+..|.+.=+.|.+..
T Consensus 42 ~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~ 74 (114)
T d1hcia4 42 QMNQLKQYEHNIINYKNNIDKLEGDHQLIQEAL 74 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567778888888888899999988888888753
No 4
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.80 E-value=1.1e+02 Score=23.26 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=19.0
Q ss_pred HhHHHHHHHHh------hhhhhhhhhhhHHhhhh
Q 019675 261 ENQCLHQLVEY------HQLTSQDLSASYEEFIQ 288 (337)
Q Consensus 261 En~~L~e~vey------hQlt~Qdv~e~~Eev~e 288 (337)
=-++|.+|++| ++++..++...++++..
T Consensus 70 Rm~W~~qi~e~~~l~~la~~d~~~~~~l~~~~~~ 103 (123)
T d1kyqa2 70 RMDWARRCTDLFGIQHCHNIDVKRLLDLFKVMFQ 103 (123)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788888876 45666666677776654
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=18.12 E-value=69 Score=22.95 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019675 191 ATLARELKSIKSDLCFMQERCTLLEEENRRL 221 (337)
Q Consensus 191 kll~rELKtvksdl~f~~~RcaqLEEENk~L 221 (337)
.-|..|++++|+++.-.......++++-..+
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888777775544
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.64 E-value=44 Score=22.25 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhc
Q 019675 204 LCFMQERCTLLEEENRRLRDG 224 (337)
Q Consensus 204 l~f~~~RcaqLEEENk~LReg 224 (337)
+.|.+..+..|++||..||.-
T Consensus 35 I~~Lq~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 35 IKYLQQVNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888754
No 7
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=14.35 E-value=56 Score=24.77 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhHhhhhccccC--CCCChhHHHHHHHHHHHHHH-hhhhhhhhhhHHHhHHHHHHHHhhhhhhhhhh--h
Q 019675 207 MQERCTLLEEENRRLRDGFVKG--IRPEEDDLVRLQLEALLAEK-SRLANENASLVRENQCLHQLVEYHQLTSQDLS--A 281 (337)
Q Consensus 207 ~~~RcaqLEEENk~LReg~~kG--~~pedDDLvR~QlE~LlaEK-srLA~EN~~~arEn~~L~e~veyhQlt~Qdv~--e 281 (337)
+..++++|+=|||-|+.....| ..|.|.-|---|=|.++.-= ++|.. ++.-..|-+.-..+ =.++ +
T Consensus 7 LaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts-~A~kKIe~kV~~~~--------~~~vTk~ 77 (96)
T d2oa5a1 7 MVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGA-VAMRKIEAKVRSRA--------AKAVTEQ 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------TTCCBHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--------cccccHH
Confidence 4568899999999999876554 34556666666777766432 23322 22222333322211 1222 6
Q ss_pred hHHhhhhcc--ccccc
Q 019675 282 SYEEFIQGM--YLDFS 295 (337)
Q Consensus 282 ~~Eev~eg~--~ld~S 295 (337)
.+|+++.+. +||||
T Consensus 78 e~e~~l~~lt~Ri~vs 93 (96)
T d2oa5a1 78 ELTSLLQSLTLRVDVS 93 (96)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHhcCeeeEEec
Confidence 788888875 67876
No 8
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]}
Probab=13.17 E-value=1.2e+02 Score=24.88 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccccCCCCC----hhHHHHHHHHHHHHH
Q 019675 203 DLCFMQERCTLLEEENRRLRDGFVKGIRPE----EDDLVRLQLEALLAE 247 (337)
Q Consensus 203 dl~f~~~RcaqLEEENk~LReg~~kG~~pe----dDDLvR~QlE~LlaE 247 (337)
++-.|+.|.++|+++.++..+-+-....|. +=|.++.+|+.|-.+
T Consensus 3 ~~~~~~~~~~~L~~~i~~~~~~Yy~~~~p~iSD~eYD~L~~~L~~le~~ 51 (313)
T d1ta8a_ 3 TLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETE 51 (313)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 456789999999999999998875433333 445566666655444
No 9
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=11.14 E-value=96 Score=24.65 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 019675 184 ISMATKAATLARELKSIK--SDLCFMQERCTLL 214 (337)
Q Consensus 184 ~amA~KAkll~rELKtvk--sdl~f~~~RcaqL 214 (337)
-++..+...|..+|+.-. .|..+.++|+|.|
T Consensus 149 ~~I~~Ri~~Lk~~l~~~~~~~e~~~L~eRLAkL 181 (184)
T d1sjpa2 149 DAIAGRVAQIRQEIENSDSDYDREKLQERLAKL 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346677778999998874 4778999999887
No 10
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.58 E-value=2.4e+02 Score=18.32 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCCChhHHHHHHHHHHHHHHhhh
Q 019675 191 ATLARELKSIKSDLCFMQERCTLLEEENRRLRDGFVKGIRPEEDDLVRLQLEALLAEKSRL 251 (337)
Q Consensus 191 kll~rELKtvksdl~f~~~RcaqLEEENk~LReg~~kG~~pedDDLvR~QlE~LlaEKsrL 251 (337)
..+++..+.++.++.--+.+...|.+.=+.|-... +.+-+.|+.+++.|-.-=..|
T Consensus 34 ~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~-----~~~~~~I~~~~~~l~~~w~~L 89 (101)
T d1u5pa2 34 QNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN-----TIGKEEIQQRLAQFVDHWKEL 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHH
Confidence 44688888888888888888888888777766532 345678899988876544443
Done!