Query 019676
Match_columns 337
No_of_seqs 177 out of 1533
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.7E-35 5.7E-40 275.5 11.5 143 165-314 1-231 (248)
2 1kca_A Repressor protein CI; g 99.1 2.2E-10 7.4E-15 93.7 10.3 90 171-315 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.0 1.6E-09 5.5E-14 88.8 9.1 53 168-234 25-78 (116)
4 1jhf_A LEXA repressor; LEXA SO 98.8 1.7E-08 5.8E-13 89.6 11.3 58 169-241 109-167 (202)
5 3bdn_A Lambda repressor; repre 98.7 4.5E-08 1.5E-12 88.2 8.9 91 170-315 140-236 (236)
6 2hnf_A Repressor protein CI101 98.6 9.2E-08 3.2E-12 80.3 9.0 52 170-234 44-101 (133)
7 3k2z_A LEXA repressor; winged 98.3 3E-06 1E-10 75.1 10.4 52 169-234 108-160 (196)
8 2fjr_A Repressor protein CI; g 95.7 0.031 1.1E-06 48.1 7.8 50 178-242 113-162 (189)
9 3v2d_O 50S ribosomal protein L 57.5 48 0.0016 27.3 8.2 27 271-298 79-105 (122)
10 2lqh_B Forkhead box O3, FOXO3A 59.6 2.6 8.9E-05 29.0 0.0 21 114-134 23-44 (52)
11 1w4s_A Polybromo, polybromo 1 49.0 27 0.00091 29.9 5.6 103 181-308 6-108 (174)
12 3r8s_K 50S ribosomal protein L 47.5 60 0.002 26.8 7.2 38 170-207 19-57 (122)
13 3bbo_M Ribosomal protein L14; 46.0 62 0.0021 26.6 7.1 27 272-299 80-106 (121)
14 1whi_A Ribosomal protein L14; 30.3 2.2E+02 0.0076 23.3 8.0 27 271-298 79-105 (122)
15 3fm8_A Kinesin-like protein KI 28.4 1.2E+02 0.004 24.6 6.0 35 236-282 79-116 (124)
16 3u5e_V L17A, YL32, 60S ribosom 28.0 1.2E+02 0.0043 25.4 6.2 28 270-298 94-121 (137)
17 4egx_A Kinesin-like protein KI 20.3 1.4E+02 0.0049 25.7 5.3 34 243-280 139-172 (184)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=1.7e-35 Score=275.51 Aligned_cols=143 Identities=36% Similarity=0.536 Sum_probs=118.4
Q ss_pred HHHheeeeEEEcCCCccccccCCCEEEEEeeecc------------cCCCCCCcEEEEeCCccccccccCCCccEEEEEE
Q 019676 165 FRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYY------------FRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVV 232 (337)
Q Consensus 165 l~~~i~~~~~V~gdSMePTL~~GD~VLVdk~~~~------------~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVi 232 (337)
++.|+++++.|.|+||+|||++||+|+|+|..|. ...+++||||+|+.|.. .+..+||||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi 73 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV 73 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence 3578999999999999999999999999998764 25799999999998752 4678999999
Q ss_pred eeCCCEEEEeCC--EEEECC-----------EEccccccc----------------------------------------
Q 019676 233 AKEGDVVEVREG--KLIVNG-----------VVRNEDYIL---------------------------------------- 259 (337)
Q Consensus 233 alPGDtV~i~dg--~lyVNG-----------~~~~e~~~~---------------------------------------- 259 (337)
|+|||+|+++++ .+|||| +.+.+.+..
T Consensus 74 glpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e 153 (248)
T 1b12_A 74 GLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKE 153 (248)
T ss_dssp ECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEE
T ss_pred eeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence 999999999999 999999 554322110
Q ss_pred ----------cCCCC-------------CCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEEEEEEEcCCCCC
Q 019676 260 ----------EAPSY-------------NMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRI 314 (337)
Q Consensus 260 ----------~~p~~-------------~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGkv~~~lwP~~r~ 314 (337)
..+.. ....++||+|+|||||||+++|.||||||+||+++|+|||+++|||+++.
T Consensus 154 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~ 231 (248)
T 1b12_A 154 TLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp EETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred hhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence 00110 22357999999999999999999999999999999999999999988754
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.14 E-value=2.2e-10 Score=93.71 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=67.3
Q ss_pred eeEEEcCCCcc------ccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEeCC
Q 019676 171 EPRYIPSLSMY------PTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREG 244 (337)
Q Consensus 171 ~~~~V~gdSMe------PTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVialPGDtV~i~dg 244 (337)
..+.|.|+||+ |+|++||+|+|++.. .++.||+|++..+ ++..++||++...
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~~----~~~~Gdivv~~~~---------~~~~~vKrl~~~~--------- 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ----AVEPGDFCIARLG---------GDEFTFKKLIRDS--------- 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCTTCEEEEETTS----CCCTTCEEEEECS---------TTCEEEEEEEEET---------
T ss_pred EEEEEeCcCcCCCCCCCCeeCCCCEEEEecCC----cCCCCCEEEEEEC---------CCeEEEEEEEEeC---------
Confidence 46789999999 999999999999853 6889999999962 3478999998642
Q ss_pred EEEECCEEccccccccCCCCCCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEEEEEEEcCCCCCC
Q 019676 245 KLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIG 315 (337)
Q Consensus 245 ~lyVNG~~~~e~~~~~~p~~~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGkv~~~lwP~~r~g 315 (337)
|.+++.+||.. |....+- ..-.|+|+|++.+||+..||
T Consensus 72 -----------------------------~~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 -----------------------------GQVFLQPLNPQ--YPMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -----------------------------TEEEEECSSTT--SCCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred -----------------------------CEEEEEECCCC--CCCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 33556677752 1111111 34679999999999988775
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.98 E-value=1.6e-09 Score=88.81 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=44.6
Q ss_pred heeeeEEEcCCCccc-cccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEee
Q 019676 168 FVAEPRYIPSLSMYP-TFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAK 234 (337)
Q Consensus 168 ~i~~~~~V~gdSMeP-TL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVial 234 (337)
--...+.|.|+||+| +|++||+++|++.. .++.||+|++.. ++..++||++..
T Consensus 25 ~~~~~~~v~GdSM~p~~i~~Gd~v~vd~~~----~~~~gdivv~~~----------~~~~~vKr~~~~ 78 (116)
T 1umu_A 25 SATYFVKASGDSMIDGGISDGDLLIVDSAI----TASHGDIVIAAV----------DGEFTVKKLQLR 78 (116)
T ss_dssp GGEEEEECCSSTTGGGTCCTTCEEEEETTS----CCCTTCEEEEEE----------TTEEEEEEEECS
T ss_pred CCEEEEEECCCCcCCCCCCCCCEEEEEcCC----CCCCCCEEEEEE----------CCEEEEEEEEeC
Confidence 345578899999999 89999999999853 588999999985 457899999864
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.84 E-value=1.7e-08 Score=89.57 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=47.0
Q ss_pred eeeeEEEcCCCcccc-ccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEE
Q 019676 169 VAEPRYIPSLSMYPT-FDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEV 241 (337)
Q Consensus 169 i~~~~~V~gdSMePT-L~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVialPGDtV~i 241 (337)
-...+.|.|+||+|+ |.+||+|+|++.. .++.||||++.. ++..+|||+. .+|+.+.+
T Consensus 109 ~~~~~~v~GdSM~p~~i~~Gd~v~vd~~~----~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l 167 (202)
T 1jhf_A 109 ADFLLRVSGMSMKDIGIMDGDLLAVHKTQ----DVRNGQVVVARI----------DDEVTVKRLK-KQGNKVEL 167 (202)
T ss_dssp CCEEEECCSSTTGGGTCCTTCEEEEEECS----CCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEE
T ss_pred CEEEEEECCCCCCCCCCCCCCEEEEeccC----CcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEE
Confidence 345688999999999 9999999999853 688999999985 5678999998 45554443
No 5
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.68 E-value=4.5e-08 Score=88.20 Aligned_cols=91 Identities=22% Similarity=0.335 Sum_probs=66.0
Q ss_pred eeeEEEcCCCcc------ccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEeC
Q 019676 170 AEPRYIPSLSMY------PTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVRE 243 (337)
Q Consensus 170 ~~~~~V~gdSMe------PTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVialPGDtV~i~d 243 (337)
...+.|.|+||+ |+|.+||+|+|++.. .++.||+|++... ++..+|||+...+|.
T Consensus 140 ~~~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~~----~~~~g~ivv~~~~---------~~~~~vKrl~~~~~~------ 200 (236)
T 3bdn_A 140 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ----AVEPGDFCIARLG---------GDEFTFKKLIRGSGQ------ 200 (236)
T ss_dssp CEEEECCSSSSCCCSSCSSCCCSSCEEEECCSS----CCCTTSEEEEEST---------TTCCCCEEEECCSSS------
T ss_pred EEEEEEeCCCcCCCCCCCCcCCCCCEEEECCCC----CCCCCcEEEEEEC---------CCeEEEEEEEEcCCc------
Confidence 446789999999 999999999999743 6889999999862 457899999864433
Q ss_pred CEEEECCEEccccccccCCCCCCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEEEEEEEcCCCCCC
Q 019676 244 GKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIG 315 (337)
Q Consensus 244 g~lyVNG~~~~e~~~~~~p~~~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGkv~~~lwP~~r~g 315 (337)
+++..||.. |....+- ..-.|+|+|++.+||...|+
T Consensus 201 --------------------------------~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 201 --------------------------------VFLQPLNPQ--YPMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp --------------------------------CEEECSSTT--SCCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred --------------------------------EEEEeCCCC--CCCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 344455542 1111110 23569999999999988775
No 6
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.64 E-value=9.2e-08 Score=80.25 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=43.3
Q ss_pred eeeEEEcCCCcc------ccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEee
Q 019676 170 AEPRYIPSLSMY------PTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAK 234 (337)
Q Consensus 170 ~~~~~V~gdSMe------PTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVial 234 (337)
...++|.|+||+ |+|++||+|+|++. ..++.||+|++... ++..+|||++..
T Consensus 44 ~f~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~ 101 (133)
T 2hnf_A 44 AFWLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFAKLIRD 101 (133)
T ss_dssp CEEEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEET---------TTEEEEEEEEEE
T ss_pred EEEEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEEC---------CCEEEEEEEEEe
Confidence 346889999999 99999999999984 36889999999852 347899999854
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.31 E-value=3e-06 Score=75.13 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=43.9
Q ss_pred eeeeEEEcCCCc-cccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEee
Q 019676 169 VAEPRYIPSLSM-YPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAK 234 (337)
Q Consensus 169 i~~~~~V~gdSM-ePTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVial 234 (337)
....+.|.|+|| +|++.+||+|+|++.. .++.||+|++.. ++...|||+.-.
T Consensus 108 ~~f~l~v~GdSM~~p~i~~GD~viv~~~~----~~~~G~ivv~~~----------~~~~~vKr~~~~ 160 (196)
T 3k2z_A 108 DHFLLKVKGESMIEEHICDGDLVLVRRQD----WAQNGDIVAAMV----------DGEVTLAKFYQR 160 (196)
T ss_dssp CEEEEECCSSTTGGGTCCTTCEEEEEECS----CCCTTCEEEEEE----------TTEEEEEEEEEE
T ss_pred CEEEEEEeCCCcCCCCCCCCCEEEEeccC----cCCCCCEEEEEE----------CCcEEEEEEEEE
Confidence 355789999999 6999999999999853 678999999985 567899999754
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=95.66 E-value=0.031 Score=48.05 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=36.9
Q ss_pred CCccccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEe
Q 019676 178 LSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVR 242 (337)
Q Consensus 178 dSMePTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVialPGDtV~i~ 242 (337)
++|...-.+||+|+|++. .+..|++|++.. ++..+|||+.-.+|+.+.+.
T Consensus 113 ~~~~~v~~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L~ 162 (189)
T 2fjr_A 113 TDGMAIRSEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHVA 162 (189)
T ss_dssp SSEEEEEETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEEE
T ss_pred CCeEEEeeCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEEE
Confidence 344443379999999974 256799999985 56789999987777665543
No 9
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=57.46 E-value=48 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.489 Sum_probs=18.2
Q ss_pred ecCCcEEEEcCCCCCCCCCCccCcccCC
Q 019676 271 VPENSVFVMGDNRNNSYDSHVWGPLPAK 298 (337)
Q Consensus 271 VP~g~yfVLGDNr~~S~DSRyfGpVp~~ 298 (337)
..+|.+.++.++. +-.-+|-||||++|
T Consensus 79 FddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 79 FDDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp ESSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred cCCcEEEEECCCC-CEeeeEEEccchHH
Confidence 3445555555553 67778999999875
No 10
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=59.61 E-value=2.6 Score=29.00 Aligned_cols=21 Identities=48% Similarity=0.882 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCC-chhhh
Q 019676 114 GSGGGGGGDGGGGDGS-DDEEA 134 (337)
Q Consensus 114 ~~~~~~~~sag~G~~~-~~e~~ 134 (337)
.+|||.+|+.|||+.. +.|..
T Consensus 23 sdgggsgggsgggslecdmesi 44 (52)
T 2lqh_B 23 SDGGGSGGGSGGGSLECDMESI 44 (52)
Confidence 3466666667777764 44433
No 11
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=49.04 E-value=27 Score=29.87 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=46.2
Q ss_pred cccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEeCCEEEECCEEcccccccc
Q 019676 181 YPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILE 260 (337)
Q Consensus 181 ePTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVialPGDtV~i~dg~lyVNG~~~~e~~~~~ 260 (337)
+|....++...-....+....++.||-|.+..+.. ....+|.||..+-.+ .++..++.++-.-.+- +
T Consensus 6 ~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~-------~~~p~I~rI~~i~~~----~~g~~~v~v~WfyRPe--e 72 (174)
T 1w4s_A 6 SAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEA-------NLQPHIVCIERLWED----SAGEKWLYGCWFYRPN--E 72 (174)
T ss_dssp --------------------CCCTTCEEEECCSST-------TSCCEEEEEEEEEEC----TTCCEEEEEEEEECGG--G
T ss_pred CccccCCCcEEeEEEEECCEEEECCCEEEEeCCCC-------CCCCEEEEEEEEEEc----CCCCEEEEEEEecCHH--H
Confidence 35555555555544444445788999999987542 345788888764321 2444455444321110 0
Q ss_pred CCCCCCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEEEEEEE
Q 019676 261 APSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRY 308 (337)
Q Consensus 261 ~p~~~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGkv~~~l 308 (337)
.... .....-++++|.- .++--++.+.|+||..-..
T Consensus 73 t~~~--~~~~~~~~EvF~S----------~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 73 TFHL--ATRKFLEKEVFKS----------DYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp SCCC--TTCEEETTEEEEE----------EEEEEEEGGGEEEEEEEEE
T ss_pred cccc--cCCcCCCCeeEEe----------CCcceecHHHeeeeEEEEE
Confidence 0010 1111127777763 3446788999999975433
No 12
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=47.49 E-value=60 Score=26.78 Aligned_cols=38 Identities=18% Similarity=-0.097 Sum_probs=21.3
Q ss_pred eeeEEEcCCCccccccCCCEEEEEeeec-ccCCCCCCcE
Q 019676 170 AEPRYIPSLSMYPTFDVGDRIVAEKVTY-YFRKPCSNDI 207 (337)
Q Consensus 170 ~~~~~V~gdSMePTL~~GD~VLVdk~~~-~~~~pkrGDI 207 (337)
+..+.|.|.+-...-..||.|++.--.. ....+++||+
T Consensus 19 v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v 57 (122)
T 3r8s_K 19 VMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDV 57 (122)
T ss_dssp EEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCE
T ss_pred EEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCE
Confidence 4456677766666666788776654321 1123455665
No 13
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=45.96 E-value=62 Score=26.63 Aligned_cols=27 Identities=11% Similarity=0.399 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCCCCCCCccCcccCCC
Q 019676 272 PENSVFVMGDNRNNSYDSHVWGPLPAKN 299 (337)
Q Consensus 272 P~g~yfVLGDNr~~S~DSRyfGpVp~~~ 299 (337)
.+|.+.++.++. +-.=+|-||||++|.
T Consensus 80 ddNa~Vlin~~g-~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQEG-NPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTTS-SCSSSCCCSCCCGGG
T ss_pred CCceEEEECCCC-CEeEeEEEcCcCHHH
Confidence 345555555553 667789999998763
No 14
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=30.33 E-value=2.2e+02 Score=23.26 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=18.6
Q ss_pred ecCCcEEEEcCCCCCCCCCCccCcccCC
Q 019676 271 VPENSVFVMGDNRNNSYDSHVWGPLPAK 298 (337)
Q Consensus 271 VP~g~yfVLGDNr~~S~DSRyfGpVp~~ 298 (337)
..+|.+.++.++. +-.=+|-||||++|
T Consensus 79 FddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 79 FDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred eCCceEEEECCCC-CEeeeEEEccchHH
Confidence 3455555666553 66778999999875
No 15
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=28.38 E-value=1.2e+02 Score=24.61 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCEEEEe---CCEEEECCEEccccccccCCCCCCCCEEecCCcEEEEcCC
Q 019676 236 GDVVEVR---EGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDN 282 (337)
Q Consensus 236 GDtV~i~---dg~lyVNG~~~~e~~~~~~p~~~~~~~~VP~g~yfVLGDN 282 (337)
++.+.+. .+..||||+.+.+. ..+.+|....+|.+
T Consensus 79 ~g~~~l~dl~~ngt~VNG~~V~~~------------~~L~~GD~I~lG~~ 116 (124)
T 3fm8_A 79 EGQVMLTPQKNTRTFVNGSSVSSP------------IQLHHGDRILWGNN 116 (124)
T ss_dssp TSCEEEEECTTCCEEETTEECCSC------------EEECTTCEEEETTT
T ss_pred CCeEEEEECCCCCEEECCEEcCCc------------EECCCCCEEEECCC
Confidence 4444543 46899999998643 34555555555543
No 16
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=27.99 E-value=1.2e+02 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=19.0
Q ss_pred EecCCcEEEEcCCCCCCCCCCccCcccCC
Q 019676 270 TVPENSVFVMGDNRNNSYDSHVWGPLPAK 298 (337)
Q Consensus 270 ~VP~g~yfVLGDNr~~S~DSRyfGpVp~~ 298 (337)
...+|.+.++.++. +-.=+|-||||++|
T Consensus 94 ~FddNA~Vlin~~g-~p~GTrI~GPVarE 121 (137)
T 3u5e_V 94 YFEDNAGVIANPKG-EMKGSAITGPVGKE 121 (137)
T ss_dssp EESSCEEEEBCTTC-CBSSSCBCSCBCHH
T ss_pred EcCCceEEEECCCC-CEeeeEEEcchhHH
Confidence 34455555666553 67778999999875
No 17
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=20.29 E-value=1.4e+02 Score=25.72 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=18.9
Q ss_pred CCEEEECCEEccccccccCCCCCCCCEEecCCcEEEEc
Q 019676 243 EGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMG 280 (337)
Q Consensus 243 dg~lyVNG~~~~e~~~~~~p~~~~~~~~VP~g~yfVLG 280 (337)
+..+||||+.+.+...+ .....+.+..+|+|...
T Consensus 139 ~a~t~VNG~~I~~~~~L----~~GDrI~lG~~h~Frfn 172 (184)
T 4egx_A 139 GADTYVNGKKVTEPSIL----RSGNRIIMGKSHVFRFN 172 (184)
T ss_dssp TCCEEETTEECCSCEEC----CTTCEEEETTTEEEEEE
T ss_pred CCeEEEcCEEccccEEc----CCCCEEEECCCCEEEEC
Confidence 56799999998653321 12223444455555443
Done!