BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019677
         (337 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
          Length = 2876

 Score = 39.3 bits (90), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 14/84 (16%)

Query: 89  RVSTKDSDRDRDRDRERSHRDRGRD---HRDRDRERSHRDRGRDHRDRDRDRGR-SDRDR 144
           +V  KD D+ RD+DR++  R++ RD    +DRD+ R  +DR +  R+RDRD+GR  DRD+
Sbjct: 844 KVREKDRDKVRDKDRDKV-REKDRDKVREKDRDKLR-EKDREK-IRERDRDKGREKDRDK 900

Query: 145 DGNRERE-------YKDRERERER 161
           +  + RE        KDR++ERE+
Sbjct: 901 EQVKTREKDQEKERLKDRDKEREK 924



 Score = 38.9 bits (89), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 12/81 (14%)

Query: 93  KDSDRDRDRDRERSHRDRGRD---HRDRDRERSH-RDRGRDH-----RDRDRDRGR-SDR 142
           KD D+ R++DR++  RD+ RD    +DRD+ R   RD+ R+      R+RDRD+GR  DR
Sbjct: 840 KDRDKVREKDRDKV-RDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDR 898

Query: 143 DRDGNREREYKDRERERERGR 163
           D++  + RE KD+E+ER + R
Sbjct: 899 DKEQVKTRE-KDQEKERLKDR 918



 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 10/72 (13%)

Query: 93  KDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDH-RDRDRDRGRSDRDRDGNRERE 151
           KD D++ ++ +E+  RD+ R+ +DRD+ R   D+ RD  R++DRD+ R ++DRD  RE  
Sbjct: 828 KDQDKELEKGQEKD-RDKVRE-KDRDKVR---DKDRDKVREKDRDKVR-EKDRDKLRE-- 879

Query: 152 YKDRERERERGR 163
            KDRE+ RER R
Sbjct: 880 -KDREKIRERDR 890


>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
          Length = 5560

 Score = 38.5 bits (88), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 110  RGRDHRDRD-RERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVS 168
            R ++ R+RD RE+  RD+  D R+++  R +  R+++ +RE++ ++RE   +   RR++ 
Sbjct: 2011 REKEQRERDNREKELRDK--DLREKEM-REKEQREKELHREKDQREREHREKEQSRRAMD 2067

Query: 169  PPREGRGGKRREVEKERNSKVDYS 192
              +EGRGG+ RE+   + SK+D +
Sbjct: 2068 VEQEGRGGRMRELSSYQKSKMDIA 2091


>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
            GN=ncm PE=1 SV=3
          Length = 1330

 Score = 35.4 bits (80), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 20/84 (23%)

Query: 108  RDRGRDHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREY-----------KDRE 156
            R+R R++   DRER   +RG    DR+R RG S  DR+ NRE  Y            DR+
Sbjct: 1141 RERNRENSSYDRER---NRGNSSYDRERKRGNSSYDRERNRESSYDKERKNRNAVAHDRQ 1197

Query: 157  RERERGRR------RSVSPPREGR 174
            R+R+R R       R  S PRE R
Sbjct: 1198 RKRDRSRSYERPTIRENSAPREKR 1221


>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
           GN=U2AF65A PE=2 SV=2
          Length = 573

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 11/81 (13%)

Query: 72  IQNKLKKKPSEEKPAQSRVSTKDSDRDR----DRDRERSHRDRGRDHRDRDRERS---HR 124
           I+++L  KP  E     R +++  DR+R    D+DRER   +  R  RDRD E+S    R
Sbjct: 29  IEDQLDSKPKRESRDHERETSRSKDREREKGRDKDRERD-SEVSRRSRDRDGEKSKERSR 87

Query: 125 DRGRDHRDRDRDRGRSDRDRD 145
           D+ RDHR+R     RS R RD
Sbjct: 88  DKDRDHRERHH---RSSRHRD 105


>sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2
          Length = 416

 Score = 31.6 bits (70), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 17/85 (20%)

Query: 92  TKDSDRDRDRDRER----------SHRDRGRDHRDRDRERSHRDRGRDH---RDRDRDR- 137
           +K  DR+R+ DRE+          SHR R  D RD DRER  + + R H   RDR +D  
Sbjct: 332 SKVGDRERESDREKERGRERDRGRSHRGRDSD-RDSDRERD-KLKDRSHHRSRDRLKDSG 389

Query: 138 GRSDRDR-DGNREREYKDRERERER 161
           G SD+ R   +R+R+Y+D  ++R R
Sbjct: 390 GHSDKSRHHSSRDRDYRDSSKDRRR 414


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.126    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,190,454
Number of Sequences: 539616
Number of extensions: 5851267
Number of successful extensions: 63203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 1450
Number of HSP's that attempted gapping in prelim test: 26800
Number of HSP's gapped (non-prelim): 13874
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)