Query 019677
Match_columns 337
No_of_seqs 224 out of 283
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 97.8 8.9E-06 3E-10 80.6 2.9 8 6-13 157-164 (437)
2 2hzc_A Splicing factor U2AF 65 97.4 2.1E-05 7.2E-10 59.0 0.4 66 220-285 4-78 (87)
3 2yh0_A Splicing factor U2AF 65 96.9 0.00018 6.2E-09 60.7 0.3 70 222-291 4-83 (198)
4 2g4b_A Splicing factor U2AF 65 96.8 0.00022 7.7E-09 58.8 0.6 71 222-292 4-84 (172)
5 1sjq_A Polypyrimidine tract-bi 96.4 0.00054 1.8E-08 55.9 0.2 70 219-293 13-89 (105)
6 2wbr_A GW182, gawky, LD47780P; 96.3 0.00064 2.2E-08 54.6 -0.0 64 223-291 8-76 (89)
7 2lxi_A RNA-binding protein 10; 96.2 0.00051 1.7E-08 53.1 -0.9 70 224-293 3-80 (91)
8 1wex_A Hypothetical protein (r 96.2 0.0012 4E-08 53.0 1.1 67 222-293 15-88 (104)
9 1fj7_A Nucleolin RBD1, protein 96.2 0.00092 3.2E-08 51.6 0.3 71 221-291 16-90 (101)
10 2cq1_A PTB-like protein L; RRM 96.1 0.0008 2.7E-08 53.8 -0.4 65 222-291 15-86 (101)
11 2i2y_A Fusion protein consists 96.1 0.0021 7.3E-08 53.2 2.1 66 221-291 72-143 (150)
12 2la4_A Nuclear and cytoplasmic 96.0 0.0017 5.7E-08 50.1 1.2 70 216-290 21-95 (101)
13 2m2b_A RNA-binding protein 10; 96.0 0.0032 1.1E-07 51.3 2.9 72 221-293 22-105 (131)
14 1x4f_A Matrin 3; structural ge 96.0 0.0012 4.1E-08 54.3 0.3 67 221-292 24-98 (112)
15 4f25_A Polyadenylate-binding p 96.0 0.00057 2E-08 54.7 -1.7 68 224-292 7-79 (115)
16 1x4d_A Matrin 3; structural ge 96.0 0.0013 4.4E-08 53.0 0.4 68 222-294 15-90 (102)
17 3r27_A HnRNP L, heterogeneous 96.0 0.00089 3E-08 54.2 -0.7 66 221-291 20-92 (100)
18 4fxv_A ELAV-like protein 1; RN 96.0 0.00049 1.7E-08 54.1 -2.2 65 221-290 18-93 (99)
19 3p5t_L Cleavage and polyadenyl 96.0 0.00063 2.2E-08 51.8 -1.6 71 224-294 3-81 (90)
20 1x4h_A RNA-binding protein 28; 95.9 0.0027 9.3E-08 49.5 1.9 72 218-294 11-99 (111)
21 2cph_A RNA binding motif prote 95.9 0.0022 7.6E-08 49.7 1.3 70 220-294 13-95 (107)
22 1wel_A RNA-binding protein 12; 95.9 0.00093 3.2E-08 53.9 -1.0 58 223-280 26-85 (124)
23 2cpx_A Hypothetical protein FL 95.9 0.0027 9.2E-08 50.0 1.6 74 221-294 24-103 (115)
24 2ytc_A PRE-mRNA-splicing facto 95.8 0.0014 4.8E-08 48.8 -0.2 57 220-280 10-66 (85)
25 2ad9_A Polypyrimidine tract-bi 95.8 0.0012 4.2E-08 54.8 -0.6 67 221-292 30-103 (119)
26 2cpj_A Non-POU domain-containi 95.7 0.0017 5.7E-08 50.1 -0.3 66 221-291 14-84 (99)
27 3egn_A RNA-binding protein 40; 95.6 0.0025 8.5E-08 52.4 0.7 73 221-293 44-127 (143)
28 2mss_A Protein (musashi1); RNA 95.6 0.0013 4.4E-08 48.0 -1.1 52 224-280 1-59 (75)
29 1whx_A Hypothetical protein ri 95.6 0.0022 7.6E-08 51.1 0.1 65 222-291 10-79 (111)
30 2cqi_A Nucleolysin TIAR; RNA r 95.6 0.0023 7.8E-08 49.5 0.2 70 220-294 13-91 (103)
31 1fje_B Nucleolin RBD12, protei 95.5 0.0017 6E-08 53.8 -0.6 75 220-294 11-89 (175)
32 1x4g_A Nucleolysin TIAR; struc 95.5 0.0027 9.1E-08 49.9 0.5 68 219-291 22-94 (109)
33 2cqd_A RNA-binding region cont 95.5 0.00085 2.9E-08 53.2 -2.5 69 221-294 16-94 (116)
34 2j76_E EIF-4B, EIF4B, eukaryot 95.5 0.0046 1.6E-07 48.0 1.7 69 218-291 15-93 (100)
35 1wg1_A KIAA1579 protein, homol 95.5 0.0016 5.4E-08 49.4 -1.0 66 222-292 5-74 (88)
36 2cqg_A TDP-43, TAR DNA-binding 95.5 0.0014 4.7E-08 50.8 -1.4 70 220-294 13-91 (103)
37 1wi8_A EIF-4B, eukaryotic tran 95.5 0.0029 9.9E-08 49.1 0.5 66 222-292 15-90 (104)
38 2lcw_A RNA-binding protein FUS 94.5 0.0024 8.3E-08 50.6 0.0 73 221-293 6-92 (116)
39 1s79_A Lupus LA protein; RRM, 95.4 0.002 6.8E-08 51.3 -0.7 55 221-280 10-70 (103)
40 3ex7_B RNA-binding protein 8A; 95.4 0.004 1.4E-07 49.8 1.2 68 220-292 20-98 (126)
41 2dgv_A HnRNP M, heterogeneous 95.4 0.0027 9.4E-08 47.8 0.1 71 221-292 7-82 (92)
42 1p27_B RNA-binding protein 8A; 95.4 0.004 1.4E-07 48.2 1.0 66 221-291 22-98 (106)
43 2lkz_A RNA-binding protein 5; 95.4 0.002 6.8E-08 50.8 -0.7 57 220-280 7-71 (95)
44 2dgs_A DAZ-associated protein 95.4 0.0037 1.3E-07 48.0 0.7 68 220-292 8-85 (99)
45 1why_A Hypothetical protein ri 95.4 0.0049 1.7E-07 47.2 1.4 66 222-291 17-88 (97)
46 1iqt_A AUF1, heterogeneous nuc 95.3 0.0015 5.2E-08 47.4 -1.5 51 225-280 2-59 (75)
47 2dh8_A DAZ-associated protein 95.3 0.0022 7.7E-08 49.7 -0.7 69 221-294 15-93 (105)
48 3smz_A Protein raver-1, ribonu 95.3 0.0048 1.6E-07 55.5 1.3 85 200-291 2-90 (284)
49 2dnm_A SRP46 splicing factor; 95.3 0.0035 1.2E-07 48.4 0.4 67 221-292 12-89 (103)
50 2dhg_A TRNA selenocysteine ass 95.3 0.0042 1.4E-07 47.9 0.8 69 221-294 8-88 (104)
51 2dnh_A Bruno-like 5, RNA bindi 95.3 0.0017 5.9E-08 50.3 -1.4 68 222-294 15-95 (105)
52 2hgm_A HNRPF protein, heteroge 95.3 0.0019 6.4E-08 54.0 -1.3 72 219-290 39-115 (126)
53 3beg_B Splicing factor, argini 95.3 0.0057 2E-07 48.9 1.6 61 221-286 15-78 (115)
54 2cpy_A RNA-binding protein 12; 95.2 0.0019 6.5E-08 51.5 -1.4 69 222-290 15-88 (114)
55 2kn4_A Immunoglobulin G-bindin 95.2 0.003 1E-07 52.4 -0.2 65 222-291 70-145 (158)
56 1x4a_A Splicing factor, argini 95.2 0.0051 1.7E-07 48.1 1.1 69 221-294 21-97 (109)
57 2div_A TRNA selenocysteine ass 95.2 0.002 7E-08 49.3 -1.2 66 220-285 7-78 (99)
58 2d9p_A Polyadenylate-binding p 95.2 0.0026 8.7E-08 49.2 -0.8 69 221-294 14-91 (103)
59 2cqp_A RNA-binding protein 12; 95.1 0.0025 8.7E-08 48.7 -0.8 69 222-291 15-90 (98)
60 2jrs_A RNA-binding protein 39; 95.1 0.0014 4.8E-08 52.1 -2.4 74 213-291 17-101 (108)
61 1wg5_A Heterogeneous nuclear r 95.1 0.0021 7.3E-08 50.3 -1.3 70 221-290 14-88 (104)
62 2ek1_A RNA-binding protein 12; 95.1 0.0026 8.9E-08 48.2 -0.9 70 222-291 15-90 (95)
63 2cqb_A Peptidyl-prolyl CIS-tra 95.1 0.0018 6.2E-08 49.9 -1.8 68 220-292 10-88 (102)
64 2db1_A Heterogeneous nuclear r 95.1 0.0024 8.4E-08 51.4 -1.1 67 220-286 15-87 (118)
65 1x5u_A Splicing factor 3B subu 95.1 0.0018 6.1E-08 50.2 -1.9 69 220-293 13-92 (105)
66 2cpf_A RNA binding motif prote 95.0 0.0033 1.1E-07 48.0 -0.4 68 222-294 5-86 (98)
67 1x5s_A Cold-inducible RNA-bind 95.0 0.0023 7.8E-08 49.3 -1.3 67 220-291 10-87 (102)
68 2jvr_A Nucleolar protein 3; RN 95.0 0.0038 1.3E-07 50.8 -0.1 71 218-291 24-100 (111)
69 1wez_A HnRNP H', FTP-3, hetero 95.0 0.0018 6E-08 51.2 -2.2 64 221-286 14-81 (102)
70 2lmi_A GRSF-1, G-rich sequence 95.0 0.0037 1.3E-07 49.2 -0.3 67 220-286 9-81 (107)
71 2cpz_A CUG triplet repeat RNA- 95.0 0.0027 9.3E-08 50.2 -1.1 71 221-292 24-101 (115)
72 1whw_A Hypothetical protein ri 95.0 0.0047 1.6E-07 47.2 0.2 69 221-294 7-86 (99)
73 2dgp_A Bruno-like 4, RNA bindi 95.0 0.0022 7.7E-08 49.7 -1.6 69 221-294 12-94 (106)
74 2fy1_A RNA-binding motif prote 94.9 0.0032 1.1E-07 50.6 -0.8 67 221-292 6-82 (116)
75 3ucg_A Polyadenylate-binding p 94.9 0.0019 6.5E-08 48.3 -2.1 65 222-291 6-80 (89)
76 2cpe_A RNA-binding protein EWS 94.9 0.0044 1.5E-07 48.7 -0.1 72 221-292 14-99 (113)
77 2la6_A RNA-binding protein FUS 94.9 0.0026 8.9E-08 49.0 -1.4 68 219-286 10-90 (99)
78 2fc8_A NCL protein; structure 94.9 0.002 6.7E-08 49.7 -2.2 69 221-292 14-88 (102)
79 2krb_A Eukaryotic translation 94.9 0.0029 9.8E-08 47.1 -1.2 60 223-286 2-74 (81)
80 3n9u_C Cleavage and polyadenyl 94.9 0.0018 6.3E-08 55.2 -2.6 69 221-291 54-132 (156)
81 3lqv_A PRE-mRNA branch site pr 94.9 0.0073 2.5E-07 47.5 1.1 67 221-292 7-81 (115)
82 2dis_A Unnamed protein product 94.9 0.0068 2.3E-07 47.1 0.9 67 222-292 8-88 (109)
83 2e5h_A Zinc finger CCHC-type a 94.8 0.0041 1.4E-07 47.0 -0.4 61 220-285 14-84 (94)
84 2cq3_A RNA-binding protein 9; 94.8 0.0059 2E-07 47.1 0.5 67 220-291 13-88 (103)
85 1x4c_A Splicing factor, argini 94.8 0.0055 1.9E-07 48.2 0.3 60 221-285 14-76 (108)
86 2cqc_A Arginine/serine-rich sp 94.8 0.0049 1.7E-07 46.5 -0.0 67 220-291 13-90 (95)
87 1uaw_A Mouse-musashi-1; RNP-ty 94.8 0.0026 8.8E-08 46.3 -1.6 56 224-280 2-60 (77)
88 2kxn_B Transformer-2 protein h 94.8 0.0048 1.7E-07 50.7 -0.1 69 220-293 44-123 (129)
89 2cq4_A RNA binding motif prote 94.8 0.0018 6.3E-08 51.1 -2.6 63 223-290 26-98 (114)
90 1h2v_Z 20 kDa nuclear CAP bind 94.8 0.0043 1.5E-07 51.7 -0.5 67 221-292 38-115 (156)
91 1x4e_A RNA binding motif, sing 94.8 0.0029 9.9E-08 47.1 -1.4 61 222-287 5-75 (85)
92 1x5t_A Splicing factor 3B subu 94.7 0.0032 1.1E-07 47.8 -1.2 71 222-292 5-82 (96)
93 2dha_A FLJ20171 protein; RRM d 94.7 0.0047 1.6E-07 51.1 -0.3 66 221-286 22-94 (123)
94 2f3j_A RNA and export factor b 94.7 0.014 4.7E-07 50.7 2.6 67 220-291 86-162 (177)
95 2x1f_A MRNA 3'-END-processing 94.7 0.0061 2.1E-07 46.6 0.3 64 223-291 3-77 (96)
96 3q2s_C Cleavage and polyadenyl 94.7 0.0018 6.3E-08 58.4 -3.1 69 222-291 68-145 (229)
97 2dnq_A RNA-binding protein 4B; 94.7 0.0073 2.5E-07 45.6 0.6 68 221-294 7-78 (90)
98 2hgn_A Heterogeneous nuclear r 94.6 0.004 1.4E-07 52.6 -1.0 69 220-290 44-117 (139)
99 2rs2_A Musashi-1, RNA-binding 94.6 0.0056 1.9E-07 48.5 -0.1 58 218-280 21-85 (109)
100 2dnz_A Probable RNA-binding pr 94.6 0.0025 8.6E-08 48.3 -2.1 65 222-291 5-80 (95)
101 2dng_A Eukaryotic translation 94.6 0.0019 6.6E-08 50.0 -2.8 66 222-292 15-89 (103)
102 2dnn_A RNA-binding protein 12; 94.6 0.0026 9E-08 51.4 -2.1 62 223-286 17-82 (109)
103 1p1t_A Cleavage stimulation fa 94.6 0.0028 9.6E-08 48.8 -1.9 70 222-292 8-84 (104)
104 1oo0_B CG8781-PA, drosophila Y 94.6 0.003 1E-07 49.4 -1.8 66 221-291 25-101 (110)
105 2a3j_A U1 small nuclear ribonu 94.6 0.0051 1.7E-07 51.1 -0.5 70 221-292 28-106 (127)
106 2hvz_A Splicing factor, argini 94.5 0.006 2.1E-07 46.9 -0.1 64 224-292 2-71 (101)
107 3s8s_A Histone-lysine N-methyl 94.5 0.0023 7.9E-08 51.4 -2.6 65 222-291 6-81 (110)
108 2fc9_A NCL protein; structure 94.5 0.0025 8.5E-08 49.1 -2.4 69 221-292 14-87 (101)
109 2cq0_A Eukaryotic translation 94.5 0.0029 1E-07 48.9 -2.0 66 222-292 15-91 (103)
110 2jwn_A Embryonic polyadenylate 94.5 0.0026 8.8E-08 50.8 -2.4 65 222-291 36-110 (124)
111 1l3k_A Heterogeneous nuclear r 94.5 0.0031 1.1E-07 53.0 -2.1 67 220-291 11-87 (196)
112 2dgx_A KIAA0430 protein; RRM d 94.5 0.0063 2.2E-07 46.8 -0.2 66 222-291 9-85 (96)
113 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.5 0.0077 2.6E-07 48.5 0.4 60 221-285 62-131 (140)
114 2do4_A Squamous cell carcinoma 94.5 0.0041 1.4E-07 47.8 -1.3 65 222-291 17-91 (100)
115 3s7r_A Heterogeneous nuclear r 94.4 0.0016 5.3E-08 48.8 -3.6 56 220-280 9-71 (87)
116 2e5j_A Methenyltetrahydrofolat 94.4 0.0064 2.2E-07 46.7 -0.2 67 221-291 18-89 (97)
117 2ki2_A SS-DNA binding protein 94.4 0.0027 9.3E-08 47.8 -2.3 64 223-292 2-76 (90)
118 3md1_A Nuclear and cytoplasmic 94.4 0.0025 8.6E-08 47.0 -2.5 63 224-291 3-76 (83)
119 2jvo_A Nucleolar protein 3; nu 94.4 0.0066 2.2E-07 48.2 -0.3 67 218-291 27-98 (108)
120 2ywk_A Putative RNA-binding pr 94.3 0.003 1E-07 47.9 -2.2 67 220-291 14-90 (95)
121 3mdf_A Peptidyl-prolyl CIS-tra 94.3 0.0035 1.2E-07 46.5 -1.9 62 220-286 5-76 (85)
122 2dnl_A Cytoplasmic polyadenyla 94.3 0.0051 1.8E-07 48.9 -1.0 59 221-281 7-71 (114)
123 2dgo_A Cytotoxic granule-assoc 94.3 0.0044 1.5E-07 48.8 -1.4 66 221-291 14-90 (115)
124 3bs9_A Nucleolysin TIA-1 isofo 94.3 0.0028 9.7E-08 47.1 -2.4 59 222-285 6-74 (87)
125 2err_A Ataxin-2-binding protei 94.3 0.0078 2.7E-07 47.6 0.0 70 221-291 28-102 (109)
126 1rk8_A CG8781-PA, CG8781-PA pr 94.3 0.0036 1.2E-07 53.0 -2.2 67 220-291 70-147 (165)
127 2dgu_A Heterogeneous nuclear r 94.2 0.0089 3E-07 46.3 0.3 66 221-293 10-80 (103)
128 1nu4_A U1A RNA binding domain; 94.2 0.008 2.7E-07 45.7 -0.1 69 221-291 7-84 (97)
129 3ulh_A THO complex subunit 4; 94.1 0.0047 1.6E-07 47.9 -1.6 66 220-290 27-102 (107)
130 2kvi_A Nuclear polyadenylated 94.1 0.0064 2.2E-07 46.7 -0.8 67 221-294 9-81 (96)
131 1u6f_A Tcubp1, RNA-binding pro 94.1 0.0038 1.3E-07 50.8 -2.3 65 223-292 43-118 (139)
132 2lea_A Serine/arginine-rich sp 94.1 0.0055 1.9E-07 50.6 -1.4 66 222-292 47-123 (135)
133 1wf0_A TDP-43, TAR DNA-binding 94.0 0.0065 2.2E-07 45.7 -0.9 55 221-280 4-60 (88)
134 1x4b_A Heterogeneous nuclear r 94.0 0.0032 1.1E-07 49.8 -2.8 70 223-293 28-103 (116)
135 3ns6_A Eukaryotic translation 94.0 0.0036 1.2E-07 48.8 -2.5 61 222-286 6-81 (100)
136 2xnq_A Nuclear polyadenylated 94.0 0.012 4.2E-07 45.6 0.6 66 219-291 19-90 (97)
137 2cpi_A CCR4-NOT transcription 93.9 0.011 3.9E-07 46.6 0.3 67 221-292 14-97 (111)
138 2do0_A HnRNP M, heterogeneous 93.9 0.0063 2.2E-07 47.7 -1.2 66 221-291 14-89 (114)
139 1fjc_A Nucleolin RBD2, protein 93.9 0.0045 1.5E-07 47.1 -2.0 67 221-291 15-86 (96)
140 2hgl_A HNRPF protein, heteroge 93.8 0.0071 2.4E-07 50.8 -1.1 67 219-285 41-113 (136)
141 1wf1_A RNA-binding protein RAL 93.8 0.0082 2.8E-07 47.1 -0.7 63 223-292 28-96 (110)
142 4a8x_A RNA-binding protein wit 93.8 0.0098 3.4E-07 44.1 -0.3 64 223-291 5-80 (88)
143 2dgw_A Probable RNA-binding pr 93.8 0.0057 1.9E-07 46.2 -1.7 68 221-290 9-81 (91)
144 2cjk_A Nuclear polyadenylated 93.7 0.0046 1.6E-07 50.6 -2.4 65 222-291 3-76 (167)
145 3sde_A Paraspeckle component 1 93.7 0.011 3.8E-07 53.2 -0.1 66 221-291 21-91 (261)
146 3md3_A Nuclear and cytoplasmic 93.7 0.0054 1.9E-07 49.7 -2.0 64 223-291 1-74 (166)
147 2cpd_A Apobec-1 stimulating pr 93.7 0.014 4.8E-07 44.8 0.4 68 221-292 14-85 (99)
148 3d2w_A TAR DNA-binding protein 93.7 0.0082 2.8E-07 46.1 -0.9 56 218-278 7-64 (89)
149 1x5o_A RNA binding motif, sing 93.5 0.0066 2.3E-07 47.7 -1.7 57 223-284 26-91 (114)
150 2khc_A Testis-specific RNP-typ 93.5 0.0038 1.3E-07 49.4 -3.1 59 222-285 40-108 (118)
151 1jmt_B Splicing factor U2AF 65 93.5 0.037 1.3E-06 35.8 2.1 21 189-209 6-26 (28)
152 2cqh_A IGF-II mRNA-binding pro 93.3 0.013 4.6E-07 44.2 -0.2 68 221-293 7-80 (93)
153 2dnp_A RNA-binding protein 14; 93.3 0.019 6.5E-07 43.2 0.6 65 221-292 8-77 (90)
154 4f02_A Polyadenylate-binding p 93.3 0.0061 2.1E-07 53.2 -2.5 53 223-280 16-75 (213)
155 2nlw_A Eukaryotic translation 93.3 0.013 4.5E-07 45.8 -0.4 66 222-291 15-95 (105)
156 2e5g_A U6 snRNA-specific termi 93.3 0.035 1.2E-06 42.2 2.0 67 221-292 7-78 (94)
157 1b7f_A Protein (SXL-lethal pro 93.1 0.0068 2.3E-07 49.4 -2.3 65 222-291 3-78 (168)
158 2xs2_A Deleted in azoospermia- 93.0 0.0052 1.8E-07 47.4 -3.0 56 220-280 7-68 (102)
159 2kt5_A RNA and export factor-b 92.9 0.0098 3.3E-07 47.6 -1.7 67 220-291 33-109 (124)
160 2cq2_A Hypothetical protein LO 92.6 0.03 1E-06 46.2 0.8 55 221-280 24-81 (114)
161 1fxl_A Paraneoplastic encephal 92.4 0.021 7.3E-07 46.1 -0.3 64 223-291 3-77 (167)
162 2qfj_A FBP-interacting repress 92.4 0.014 4.7E-07 49.7 -1.5 66 221-291 27-103 (216)
163 2dgt_A RNA-binding protein 30; 91.9 0.022 7.5E-07 43.1 -0.7 66 220-292 8-78 (92)
164 2adc_A Polypyrimidine tract-bi 91.9 0.077 2.6E-06 46.6 2.7 66 221-291 33-105 (229)
165 3pgw_A U1-A; protein-RNA compl 91.8 0.029 9.8E-07 50.3 -0.2 72 220-291 7-85 (282)
166 2diu_A KIAA0430 protein; struc 91.4 0.041 1.4E-06 44.7 0.3 66 225-294 12-82 (96)
167 3u1l_A PRE-mRNA-splicing facto 91.2 0.026 9E-07 52.1 -1.1 56 220-279 132-196 (240)
168 3nmr_A Cugbp ELAV-like family 91.1 0.022 7.4E-07 46.6 -1.6 53 223-280 4-65 (175)
169 2cjk_A Nuclear polyadenylated 90.9 0.015 5.3E-07 47.4 -2.7 63 223-290 88-160 (167)
170 4f02_A Polyadenylate-binding p 90.9 0.031 1.1E-06 48.6 -0.9 68 223-291 104-176 (213)
171 3tht_A Alkylated DNA repair pr 89.9 0.069 2.3E-06 51.8 0.4 59 217-280 13-74 (345)
172 1l3k_A Heterogeneous nuclear r 89.8 0.022 7.6E-07 47.7 -2.7 64 223-291 105-178 (196)
173 2ghp_A U4/U6 snRNA-associated 89.8 0.052 1.8E-06 48.8 -0.5 67 219-290 38-112 (292)
174 2voo_A Lupus LA protein; RNA-b 89.7 0.023 8E-07 49.7 -2.8 65 223-291 110-182 (193)
175 1x5p_A Negative elongation fac 89.5 0.067 2.3E-06 40.8 -0.0 65 222-292 15-83 (97)
176 2qfj_A FBP-interacting repress 89.4 0.061 2.1E-06 45.6 -0.3 66 221-291 124-200 (216)
177 3md3_A Nuclear and cytoplasmic 89.3 0.027 9.3E-07 45.5 -2.5 62 224-286 89-156 (166)
178 1qm9_A Polypyrimidine tract-bi 89.3 0.078 2.7E-06 44.8 0.2 65 223-291 4-74 (198)
179 1sjr_A Polypyrimidine tract-bi 88.8 0.12 4.1E-06 45.3 1.1 66 221-291 45-119 (164)
180 3nmr_A Cugbp ELAV-like family 88.4 0.051 1.7E-06 44.3 -1.5 53 223-280 96-154 (175)
181 2e5i_A Heterogeneous nuclear r 88.3 0.094 3.2E-06 43.6 0.1 64 224-291 27-97 (124)
182 2e44_A Insulin-like growth fac 88.1 0.1 3.4E-06 39.5 0.1 65 222-291 15-87 (96)
183 3sde_A Paraspeckle component 1 88.0 0.06 2E-06 48.4 -1.4 73 222-294 96-177 (261)
184 1fje_B Nucleolin RBD12, protei 87.8 0.056 1.9E-06 44.6 -1.6 59 223-286 100-163 (175)
185 2g4b_A Splicing factor U2AF 65 87.3 0.065 2.2E-06 43.8 -1.5 59 223-286 95-163 (172)
186 3pgw_A U1-A; protein-RNA compl 86.8 0.13 4.6E-06 45.9 0.2 60 221-285 206-270 (282)
187 1fxl_A Paraneoplastic encephal 86.4 0.099 3.4E-06 42.1 -0.8 59 223-286 89-157 (167)
188 2bz2_A Negative elongation fac 86.0 0.11 3.8E-06 42.1 -0.7 66 221-292 38-107 (121)
189 2yh0_A Splicing factor U2AF 65 85.2 0.048 1.7E-06 45.6 -3.4 66 221-291 113-189 (198)
190 2adc_A Polypyrimidine tract-bi 84.2 0.31 1.1E-05 42.7 1.3 61 222-285 151-215 (229)
191 3tyt_A Heterogeneous nuclear r 84.2 0.13 4.6E-06 45.1 -1.1 64 223-286 124-192 (205)
192 3smz_A Protein raver-1, ribonu 84.1 0.097 3.3E-06 46.9 -2.1 71 220-291 93-170 (284)
193 1qm9_A Polypyrimidine tract-bi 83.7 0.23 7.9E-06 41.8 0.2 61 222-285 120-184 (198)
194 3zzy_A Polypyrimidine tract-bi 83.5 0.3 1E-05 41.0 0.8 72 215-291 21-101 (130)
195 2ghp_A U4/U6 snRNA-associated 83.2 0.18 6.1E-06 45.3 -0.8 59 223-286 211-280 (292)
196 1b7f_A Protein (SXL-lethal pro 81.2 0.13 4.6E-06 41.6 -2.2 58 223-284 90-156 (168)
197 3tyt_A Heterogeneous nuclear r 80.7 0.4 1.4E-05 42.1 0.6 65 223-291 5-75 (205)
198 2d9o_A DNAJ (HSP40) homolog, s 65.5 2.8 9.5E-05 33.1 1.9 39 253-291 44-85 (100)
199 2j8a_A Histone-lysine N-methyl 62.3 0.45 1.5E-05 40.9 -3.4 44 224-271 4-57 (136)
200 2l9w_A U4/U6 snRNA-associated- 48.3 3.3 0.00011 34.8 -0.4 67 222-288 21-91 (117)
201 1owx_A Lupus LA protein, SS-B, 46.1 4.8 0.00016 33.4 0.3 54 224-281 20-75 (121)
202 3v4m_A Splicing factor U2AF 65 44.8 10 0.00034 29.7 2.0 28 260-287 57-87 (105)
203 1jmt_A Splicing factor U2AF 35 38.1 13 0.00045 28.9 1.7 28 260-287 66-96 (104)
204 2pe8_A Splicing factor 45; RRM 35.3 17 0.00058 28.5 1.9 29 259-287 53-84 (105)
205 2dit_A HIV TAT specific factor 26.2 28 0.00096 26.8 1.8 32 260-291 62-97 (112)
206 3s6e_A RNA-binding protein 39; 24.4 30 0.001 27.7 1.6 28 260-287 53-83 (114)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.77 E-value=8.9e-06 Score=80.62 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019677 6 AAAYYDEL 13 (337)
Q Consensus 6 ~~~~~~~~ 13 (337)
|.+.+..|
T Consensus 157 A~~Ai~~l 164 (437)
T 3pgw_S 157 MHSAYKHA 164 (437)
T ss_pred HHHHHHHc
Confidence 33333333
No 2
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.45 E-value=2.1e-05 Score=58.97 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=49.2
Q ss_pred ccccccCCcccccccccCCccc---hh----hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLD---DE----EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMFG 285 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealld---N~----~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~fG 285 (337)
.....|||||||+.++++.|.+ .. ++...++.++..+.+..+++||||+|.+.+.+..|+ ++..|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 4556799999999999988776 22 333334568999999999999999999977665554 455444
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.87 E-value=0.00018 Score=60.71 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=51.8
Q ss_pred ccccCCcccccccccCCccch---h----hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD---E----EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN---~----~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~ 291 (337)
.+.|||+|||+.++++.|.+. . ++...++++++.+.++.+++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~ 83 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEe
Confidence 467999999999999987772 1 333345668999999999999999999977766554 4544 44555444
No 4
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.83 E-value=0.00022 Score=58.79 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=51.5
Q ss_pred ccccCCcccccccccCCccch---h----hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD---E----EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN---~----~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~ 291 (337)
...|||||||+.++++.|.+. . ++...++.+++.+.+..+++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 83 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeec
Confidence 467899999999999987772 1 222234568999999999999999999977766665 4444 44455444
Q ss_pred C
Q 019677 292 S 292 (337)
Q Consensus 292 ~ 292 (337)
.
T Consensus 84 ~ 84 (172)
T 2g4b_A 84 R 84 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.42 E-value=0.00054 Score=55.92 Aligned_cols=70 Identities=7% Similarity=-0.091 Sum_probs=48.4
Q ss_pred cccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhhh------hccCCcccCC
Q 019677 219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDE------AMFGASAVPP 291 (337)
Q Consensus 219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~Dg------i~fG~ptvv~ 291 (337)
......|||||||+.++++.|.+. ... | .|..|.|-.+++||||||.+.+....|++. .+.|-++.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~f----G-~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPF----G-KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHH----C-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----C-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 344567999999999998886652 111 1 356666667799999999997776666542 2456677666
Q ss_pred CC
Q 019677 292 SV 293 (337)
Q Consensus 292 ~t 293 (337)
-.
T Consensus 88 ~A 89 (105)
T 1sjq_A 88 FS 89 (105)
T ss_dssp CC
T ss_pred Ec
Confidence 43
No 6
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.30 E-value=0.00064 Score=54.59 Aligned_cols=64 Identities=6% Similarity=-0.127 Sum_probs=47.1
Q ss_pred cccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
-.||||||++.++++.|.+.. +.- ||+.+++..+++||||||.+++.+..|. ++.. +|-++.|.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G-----~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHG-----PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhC-----CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 358999999999999877732 222 6888899899999999999976665554 4545 45555553
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.24 E-value=0.00051 Score=53.05 Aligned_cols=70 Identities=14% Similarity=0.011 Sum_probs=44.4
Q ss_pred ccCCcccccccccCCccch---hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh----hh-ccCCcccCCCC
Q 019677 224 TKGSGWERFEFDKDAPLDD---EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD----EA-MFGASAVPPSV 293 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN---~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D----gi-~fG~ptvv~~t 293 (337)
.|+|+|||+.++++.|.+. .+..+....-+....++.+++||||+|.+.+.+..|++ +. +.|-++.|.-.
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 4789999999999987772 12111111111112367899999999999877776654 33 34567766543
No 8
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.22 E-value=0.0012 Score=53.00 Aligned_cols=67 Identities=7% Similarity=-0.096 Sum_probs=46.1
Q ss_pred ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---h--h-ccCCcccCCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---E--A-MFGASAVPPSV 293 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---g--i-~fG~ptvv~~t 293 (337)
...|||+|||+.++++.|.+.. ..- .|..+.+-..++||||||.+.+....|+. + + +.|.++.|.-.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFG-----TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4569999999999988766521 111 34455555679999999999777766654 2 2 46677766643
No 9
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.19 E-value=0.00092 Score=51.60 Aligned_cols=71 Identities=14% Similarity=0.005 Sum_probs=45.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhcc-CCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMF-GASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~f-G~ptvv~ 291 (337)
....|||||||+.++++.|.+. ...-.+...-+....++.+++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence 3457999999999999887662 1211122223344457889999999999976665554 44443 4455444
No 10
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.11 E-value=0.0008 Score=53.76 Aligned_cols=65 Identities=6% Similarity=-0.162 Sum_probs=45.0
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhhh-----h-ccCCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDE-----A-MFGASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~Dg-----i-~fG~ptvv~ 291 (337)
...|||+|||+.++++.|.+. ...- .|..+.+...++||||||.+.+....|+.. . +.|-++.|.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG-----~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFG-----KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 356999999999998876652 1111 245555666799999999997777666652 2 456677665
No 11
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.08 E-value=0.0021 Score=53.19 Aligned_cols=66 Identities=12% Similarity=-0.038 Sum_probs=43.7
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCC-cccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQ-SFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInq-sk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
....|||||||+.++++.|.+. ... + +|..|.|.. +++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYY----G-PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHH----S-CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhh----C-CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3356899999999998876552 111 1 355566544 4999999999977766665 45444 4455443
No 12
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0017 Score=50.13 Aligned_cols=70 Identities=11% Similarity=-0.075 Sum_probs=46.6
Q ss_pred ccccccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677 216 AETANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP 290 (337)
Q Consensus 216 ~~tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv 290 (337)
.........|||||||+.++++.|.+. ... -+|..+.+..+++||||+|.+.+.+..|+ ++..| |.++.|
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~-----G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNF-----GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTT-----SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhC-----CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 334444567999999999998876652 111 13555666689999999999977666554 45554 444444
No 13
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.05 E-value=0.0032 Score=51.35 Aligned_cols=72 Identities=10% Similarity=-0.011 Sum_probs=45.7
Q ss_pred cccccCCcccccccccCCccch-hhhhhcc-CCceeEE--ecCCcccchhhhhhhHhhHHHHh---hh-----hccCCcc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAALVK--HIGQSFRFSAIEARREEQIKAAH---DE-----AMFGASA 288 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie-~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dg-----i~fG~pt 288 (337)
....|||||||+.++++.|.+. ...-.+. .+..|.. .++++++||||+|.+. ....|+ ++ .+.|-++
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3456999999999999887662 1111111 1112222 2678999999999998 655554 45 4566677
Q ss_pred cCCCC
Q 019677 289 VPPSV 293 (337)
Q Consensus 289 vv~~t 293 (337)
.|...
T Consensus 101 ~V~~a 105 (131)
T 2m2b_A 101 NVEFA 105 (131)
T ss_dssp CCEEC
T ss_pred EEEEC
Confidence 66533
No 14
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.01 E-value=0.0012 Score=54.28 Aligned_cols=67 Identities=12% Similarity=-0.065 Sum_probs=45.7
Q ss_pred cccccCCcccccc-cccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhhh-----h-ccCCcccCCC
Q 019677 221 KDETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDE-----A-MFGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~Dg-----i-~fG~ptvv~~ 292 (337)
....|||+|||+. ++++.|.+.. ..- .|..|.|..+++||||||.+.+....|+.. . +.|-++.|.-
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYG-----KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTS-----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcC-----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3457999999997 8888766521 111 244555667899999999997776666542 2 4566776653
No 15
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.99 E-value=0.00057 Score=54.73 Aligned_cols=68 Identities=10% Similarity=-0.037 Sum_probs=42.7
Q ss_pred ccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
.|||||||+.++++.|.+. ...-.+ .+.-|..+.+.+++||||+|.+.+.+..|+ ++.. .|-++.|..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCE-EEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4899999999999876662 111100 011222334557899999999977776665 4554 455665543
No 16
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.0013 Score=52.95 Aligned_cols=68 Identities=16% Similarity=-0.033 Sum_probs=47.9
Q ss_pred ccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---h---hccCCcccCCCC
Q 019677 222 DETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---E---AMFGASAVPPSV 293 (337)
Q Consensus 222 dr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---g---i~fG~ptvv~~t 293 (337)
...|||||||+ .++++.|.+. ... + .|..|.|-.+++||||||.+.+....|++ + .+.|-++.|.-.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~f----G-~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPF----G-VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGG----S-CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhc----C-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 35699999999 9988876652 122 1 36666777788999999999777666654 2 256777777644
Q ss_pred C
Q 019677 294 S 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 90 ~ 90 (102)
T 1x4d_A 90 Q 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.98 E-value=0.00089 Score=54.23 Aligned_cols=66 Identities=9% Similarity=-0.110 Sum_probs=46.6
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hh---ccCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EA---MFGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi---~fG~ptvv~ 291 (337)
....|||+|+|+.++++.|.+.. .. | +|..+.+-..++||||||.+.+....|++ +. +.|-++.|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~f----G-~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEF----G-PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGG----S-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcc----C-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 44679999999999998765521 12 1 35566666789999999999877776765 32 346677665
No 18
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.97 E-value=0.00049 Score=54.15 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=42.4
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv 289 (337)
+...|||||||+.++++.|.+.- ..- +|..| .++.+++||||+|.+.+.+..|+ ++..|+ -++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIG-----EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34569999999999998866621 110 12222 24678899999999977766554 455544 4444
Q ss_pred C
Q 019677 290 P 290 (337)
Q Consensus 290 v 290 (337)
|
T Consensus 93 V 93 (99)
T 4fxv_A 93 V 93 (99)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=95.95 E-value=0.00063 Score=51.83 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=42.5
Q ss_pred ccCCcccccccccCCccch-hhhhhccC-CceeEEe--cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCCC
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKH--IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSVS 294 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~q--Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t~ 294 (337)
.|||||||+.++++.|.+. ...-.++. +..+..+ .+++++||||+|.+.+.+..|+ ++.. .|-++.|....
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999998876662 11110011 2222222 6688999999999977765554 4544 55566665444
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.91 E-value=0.0027 Score=49.48 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=46.6
Q ss_pred ccccccccCCcccccccccCCccch-hhhhhccCCceeEEec------CCcccchhhhhhhHhhHHHHhh---------h
Q 019677 218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------GQSFRFSAIEARREEQIKAAHD---------E 281 (337)
Q Consensus 218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------nqsk~fA~vEFKseetvalA~D---------g 281 (337)
.......|||+|||+.++++.|.+. ..+- +|..|.| +..++||||+|.+.+.+..|+. +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFG-----DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3344567999999999998876662 1111 2344443 4678999999999777766654 3
Q ss_pred hc-cCCcccCCCCC
Q 019677 282 AM-FGASAVPPSVS 294 (337)
Q Consensus 282 i~-fG~ptvv~~t~ 294 (337)
.. .|.++.|....
T Consensus 86 ~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 86 LKLDGRQLKVDLAV 99 (111)
T ss_dssp EESSSCEEEEECCC
T ss_pred cEEcCEEEEEEECC
Confidence 44 45556555433
No 21
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.0022 Score=49.66 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=45.2
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHHhh----hhc-cCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAAHD----EAM-FGA 286 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA~D----gi~-fG~ 286 (337)
.....|||+|||+.++++.|.+. ..+- +|..|.| +..++||||+|.+.+.+..|+. +.. .|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFG-----ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccC-----CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 34466999999999998876652 1111 2444443 4558999999999777666653 334 455
Q ss_pred cccCCCCC
Q 019677 287 SAVPPSVS 294 (337)
Q Consensus 287 ptvv~~t~ 294 (337)
++.|....
T Consensus 88 ~l~v~~a~ 95 (107)
T 2cph_A 88 RLVLEWAD 95 (107)
T ss_dssp BCEEEECC
T ss_pred EEEEEeCC
Confidence 66665443
No 22
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.87 E-value=0.00093 Score=53.94 Aligned_cols=58 Identities=21% Similarity=0.056 Sum_probs=37.8
Q ss_pred cccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~D 280 (337)
..|||+|||+.++++.|.+. ..+-.+.. --++....+..++||||+|.+.+.+..|+.
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 56899999999998876652 11111111 112222367889999999999777666654
No 23
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.0027 Score=49.95 Aligned_cols=74 Identities=8% Similarity=-0.095 Sum_probs=46.7
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCC-ceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDD-AALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSVS 294 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~D-pvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t~ 294 (337)
....|||+|||+.++++.|.+. ..+-.+..- -.+....+..++||||+|.+.+.+..|+ ++.. .|.++.|....
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 3467999999999999887662 122111110 1112226788999999999977766665 4444 55666665433
No 24
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.0014 Score=48.77 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=41.0
Q ss_pred ccccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677 220 NKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D 280 (337)
.....|||+|||+.++++.|.+. +.. --+|..+.+..+++||||+|.+.+.+..|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~--f~~--~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNH--FYQ--FGEIRTITVVQRQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHH--HHT--TSCEEEEEEEGGGTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHH--HHh--CCCEeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34467999999999888875551 111 1147777777889999999999777666653
No 25
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.78 E-value=0.0012 Score=54.76 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=45.4
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---h---hccCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---E---AMFGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---g---i~fG~ptvv~~ 292 (337)
....|||||||+.++++.|.+.. .. -.|..+.|-.+++||||||.+.+.+..|+. + .+.|-++.|.-
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f-----G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF-----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT-----SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34679999999999988766521 11 124445555679999999999777666654 2 24666776653
No 26
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.66 E-value=0.0017 Score=50.07 Aligned_cols=66 Identities=14% Similarity=-0.018 Sum_probs=45.2
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
....|||+|||+.++++.|.+. ... -+|..+.+..+++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKY-----GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTT-----CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc-----CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456999999999988876551 111 14566677788999999999976665554 4544 45555554
No 27
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=95.64 E-value=0.0025 Score=52.39 Aligned_cols=73 Identities=10% Similarity=-0.119 Sum_probs=46.3
Q ss_pred cccccCCcccccccccCCccch-hhhhhccC------CceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAED------DAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~------Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv 289 (337)
....|||||||+.++++.|.+. ..+-.+.. --+.....+.+++||||+|.+.+.+..|+ ++.. .|.++.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3456999999999998876662 11111111 01222357889999999999977766554 4544 555666
Q ss_pred CCCC
Q 019677 290 PPSV 293 (337)
Q Consensus 290 v~~t 293 (337)
|...
T Consensus 124 V~~a 127 (143)
T 3egn_A 124 VQFA 127 (143)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6543
No 28
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.59 E-value=0.0013 Score=47.97 Aligned_cols=52 Identities=8% Similarity=-0.030 Sum_probs=35.2
Q ss_pred ccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D 280 (337)
.|||+|||+.++++.|.+. ...- ++..+ ..+.+++||||+|.+.+.+..|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFG-----KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS-----CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3789999999998886662 1111 11122 246678999999999777666653
No 29
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.57 E-value=0.0022 Score=51.13 Aligned_cols=65 Identities=3% Similarity=-0.244 Sum_probs=45.6
Q ss_pred ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
...|||+|||+.++++.|.+.- .. -+|..|.|..+++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF-----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT-----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4569999999999888765521 11 14667778889999999999977766664 4554 45555443
No 30
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.56 E-value=0.0023 Score=49.50 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=45.1
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
.....|||+|||+.++++.|.+. ..+- +|..|.| +..++||||+|.+.+.+..|+ ++.. .|.++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIG-----PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHS-----CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcC-----CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34466999999999998876662 1111 2333332 346899999999977766554 4444 5666666
Q ss_pred CCCC
Q 019677 291 PSVS 294 (337)
Q Consensus 291 ~~t~ 294 (337)
....
T Consensus 88 ~~a~ 91 (103)
T 2cqi_A 88 NWAT 91 (103)
T ss_dssp EECC
T ss_pred EECC
Confidence 5444
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.55 E-value=0.0017 Score=53.80 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=49.5
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCCCCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPPSVS 294 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~~t~ 294 (337)
.....|||+|||+.++++.|.+. ..+-.+.+-.+..+.++.+++||||+|.+.+.+..|+ ++.. .|.++.|....
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 44566999999999999887661 1211111234555568899999999999977665554 4544 45566655443
No 32
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.54 E-value=0.0027 Score=49.87 Aligned_cols=68 Identities=10% Similarity=-0.026 Sum_probs=47.4
Q ss_pred cccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
......|||+|||+.++++.|.+. ... + +|..|.+...++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G-~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF----G-QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH----S-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345567999999999998876652 111 1 4667777777999999999977766554 55554 4455444
No 33
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.53 E-value=0.00085 Score=53.20 Aligned_cols=69 Identities=10% Similarity=-0.056 Sum_probs=46.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhccCCcccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAMFGASAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~fG~ptvv 290 (337)
....|||+|||+.++++.|.+. ..+ -+|..|. .+..++||||+|.+.+.+..|+. +.+.|.++.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGF-----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTT-----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 3456999999999998876662 111 1233333 35678899999999888777764 5556667766
Q ss_pred CCCC
Q 019677 291 PSVS 294 (337)
Q Consensus 291 ~~t~ 294 (337)
....
T Consensus 91 ~~a~ 94 (116)
T 2cqd_A 91 NLAY 94 (116)
T ss_dssp EEST
T ss_pred EEcc
Confidence 5443
No 34
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.51 E-value=0.0046 Score=47.97 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=41.1
Q ss_pred ccccccccCCcccccccccCCccchhhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHH--hhhhccCC-c
Q 019677 218 TANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAA--HDEAMFGA-S 287 (337)
Q Consensus 218 tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA--~Dgi~fG~-p 287 (337)
.......|||||||+.++++.|.+. +... + |..|.| ++.++||||+|.+.+.+..| +++..|++ +
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~--F~~~-G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEF--FRGL-N--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHH--SCSS-C--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHH--HHhc-C--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 3455577999999999999876551 1111 2 444443 45688999999996665544 45555543 4
Q ss_pred ccCC
Q 019677 288 AVPP 291 (337)
Q Consensus 288 tvv~ 291 (337)
+.|.
T Consensus 90 l~V~ 93 (100)
T 2j76_E 90 IRVD 93 (100)
T ss_dssp CCCE
T ss_pred EEEE
Confidence 4443
No 35
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=95.48 E-value=0.0016 Score=49.36 Aligned_cols=66 Identities=9% Similarity=-0.101 Sum_probs=43.8
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
...|||||||+.++++.|.+. +... +|..+.+.+.++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~--F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDL--LKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHH--TCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHH--HhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 456899999999998775541 1111 3444555588999999999977766664 4544 444555543
No 36
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.47 E-value=0.0014 Score=50.80 Aligned_cols=70 Identities=10% Similarity=-0.044 Sum_probs=45.9
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhhh--hccCCcccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHDE--AMFGASAVP 290 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~Dg--i~fG~ptvv 290 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+.+++||||+|.+.+.+..|+.. .+.|.++.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFG-----EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGS-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEE
Confidence 33456999999999998876662 1111 222332 466788999999998887777762 235556655
Q ss_pred CCCC
Q 019677 291 PSVS 294 (337)
Q Consensus 291 ~~t~ 294 (337)
....
T Consensus 88 ~~a~ 91 (103)
T 2cqg_A 88 KLPN 91 (103)
T ss_dssp ECCC
T ss_pred EecC
Confidence 5443
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.47 E-value=0.0029 Score=49.11 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=42.5
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHH--hhhhcc-CCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAA--HDEAMF-GASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA--~Dgi~f-G~ptvv~ 291 (337)
...|||+|||+.++++.|.+. +... + |+.|.| +..++||||+|.+.+.+..| +++..| |.++.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~--F~~~-G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEF--FRGL-N--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHH--TTTS-C--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHH--HHHC-C--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 356899999999998876551 1111 2 444443 56688999999997665555 455544 4455554
Q ss_pred C
Q 019677 292 S 292 (337)
Q Consensus 292 ~ 292 (337)
.
T Consensus 90 ~ 90 (104)
T 1wi8_A 90 V 90 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 38
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=94.46 E-value=0.0024 Score=50.63 Aligned_cols=73 Identities=12% Similarity=-0.024 Sum_probs=45.4
Q ss_pred cccccCCcccccccccCCccch-hhhhhcc-----CCceeEE----ecCCcccchhhhhhhHhhHHHHh---hhhc-cCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAE-----DDAALVK----HIGQSFRFSAIEARREEQIKAAH---DEAM-FGA 286 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie-----~Dpvl~~----qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ 286 (337)
....|||+|||+.++++.|.+. ...-.+. +.|++.+ ..+..++||||+|.+.+.+..|+ ++.. .|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3456999999999999987772 1111111 1221222 24577899999999977766554 4544 455
Q ss_pred cccCCCC
Q 019677 287 SAVPPSV 293 (337)
Q Consensus 287 ptvv~~t 293 (337)
++.|...
T Consensus 86 ~l~V~~a 92 (116)
T 2lcw_A 86 PIKVSFA 92 (116)
Confidence 6666543
No 39
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.42 E-value=0.002 Score=51.26 Aligned_cols=55 Identities=9% Similarity=-0.185 Sum_probs=38.5
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHhh
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~D 280 (337)
....|||||||+.++++.|.+.- .. | +|..|.| +.+++||||+|.+.+.+..|+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~----G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK----G-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS----S-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc----C-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 34679999999999988766511 11 0 2333332 6689999999999887776764
No 40
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.41 E-value=0.004 Score=49.80 Aligned_cols=68 Identities=13% Similarity=-0.027 Sum_probs=44.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~pt 288 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++..| |.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYG-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 33456999999999998876662 1111 233333 4456899999999977766554 45554 4555
Q ss_pred cCCC
Q 019677 289 VPPS 292 (337)
Q Consensus 289 vv~~ 292 (337)
.|..
T Consensus 95 ~v~~ 98 (126)
T 3ex7_B 95 SVDW 98 (126)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 41
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.40 E-value=0.0027 Score=47.83 Aligned_cols=71 Identities=14% Similarity=-0.028 Sum_probs=43.3
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. ..+-.+. +..+....+..++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4466899999999998876652 1111000 11122234567899999999977766554 4544 455555543
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.39 E-value=0.004 Score=48.24 Aligned_cols=66 Identities=14% Similarity=-0.000 Sum_probs=42.7
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv 289 (337)
....|||+|||+.++++.|.+. ...- +|..|. ++..++||||+|.+.+.+..|+ ++..| |.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYG-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC-----CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3456999999999998876652 1111 233333 3567899999999977766554 45544 44554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 97 V~ 98 (106)
T 1p27_B 97 VD 98 (106)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.38 E-value=0.002 Score=50.79 Aligned_cols=57 Identities=9% Similarity=-0.075 Sum_probs=39.9
Q ss_pred ccccccCCcccccccccCCccch-hhh---hh----ccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEI---EA----AEDDAALVKHIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~L---ea----ie~Dpvl~~qInqsk~fA~vEFKseetvalA~D 280 (337)
.....|||+|||+.++++.|.+. ... .. +.-|+ .++++++||||+|.+.+.+..|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~----~tg~srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK----QTQQNRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS----SSSSCSSEEEEECSSSHHHHHHHH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC----CCCCCceEeEEEECCHHHHHHHHH
Confidence 34456999999999999987772 111 10 11222 268899999999999777777765
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.0037 Score=47.98 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=44.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hhc-cCCccc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAV 289 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptv 289 (337)
.....|||+|||+.++++.|.+. ... -+|..|. .+..++||||+|.+.+.+..|++ +.. .|.++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF-----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS-----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 34467999999999998876551 111 1233333 35678999999999777666653 433 455555
Q ss_pred CCC
Q 019677 290 PPS 292 (337)
Q Consensus 290 v~~ 292 (337)
|..
T Consensus 83 V~~ 85 (99)
T 2dgs_A 83 VKR 85 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 45
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.35 E-value=0.0049 Score=47.22 Aligned_cols=66 Identities=11% Similarity=-0.106 Sum_probs=44.4
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccC---CcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFG---ASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG---~ptvv~ 291 (337)
...|||+|||+.++++.|.+.- . .--+|..+.+...++||||+|.+.+.+..|+ ++..|. .++.|.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F--~--~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREF--D--RFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHH--H--TTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHH--H--hcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 3579999999999888765521 1 1114666777777999999999977665554 455543 455444
No 46
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.34 E-value=0.0015 Score=47.44 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=35.5
Q ss_pred cCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh
Q 019677 225 KGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 225 L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D 280 (337)
|||+|||+.++++.+.+. ...- ++..+ ..+..++||||+|.+.+.+..|+.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFG-----EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHS-----CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 689999999998886662 1111 12222 246778999999999877776764
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.0022 Score=49.73 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=44.4
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv 290 (337)
....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+. +.. .|.++.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V 89 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYG-----EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP 89 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTS-----CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 3456999999999998876662 1111 222222 45677899999999777665553 444 4556666
Q ss_pred CCCC
Q 019677 291 PSVS 294 (337)
Q Consensus 291 ~~t~ 294 (337)
....
T Consensus 90 ~~a~ 93 (105)
T 2dh8_A 90 KPCT 93 (105)
T ss_dssp CCSC
T ss_pred EEcc
Confidence 5443
No 48
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.29 E-value=0.0048 Score=55.48 Aligned_cols=85 Identities=9% Similarity=-0.074 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHhhhhccccccccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh
Q 019677 200 HMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH 279 (337)
Q Consensus 200 ~~TPAEkvkar~q~QL~~tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~ 279 (337)
+|+|.+.....- .+.........|||+|||+.++++.|.+. +... | ++.|.++.+++||||+|.+.+.+..|+
T Consensus 2 ~~~~~e~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~l~~~--F~~~-G--i~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (284)
T 3smz_A 2 MLDPEEIRKRLE--HTERQFRNRRKILIRGLPGDVTNQEVHDL--LSDY-E--LKYCFVDKYKGTAFVTLLNGEQAEAAI 74 (284)
T ss_dssp CCCHHHHHHHHH--HHHHHHHCCCEEEEECCCTTCCHHHHHHH--TTTS-C--EEEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCChHHHHHHHh--hhhccCCCCCEEEEeCCCCCCCHHHHHHH--HHHc-C--CEEEEEecCCCEEEEEeCCHHHHHHHH
Confidence 567766554311 12233344567999999999998876551 1222 3 778888999999999999977776665
Q ss_pred ---hhhc-cCCcccCC
Q 019677 280 ---DEAM-FGASAVPP 291 (337)
Q Consensus 280 ---Dgi~-fG~ptvv~ 291 (337)
++.. .|.++.|.
T Consensus 75 ~~l~~~~~~g~~i~v~ 90 (284)
T 3smz_A 75 NAFHQSRLRERELSVQ 90 (284)
T ss_dssp HHHTTCEETTEECEEE
T ss_pred HHcCCCeeCCeEEEEE
Confidence 4444 44455443
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.0035 Score=48.44 Aligned_cols=67 Identities=12% Similarity=-0.071 Sum_probs=43.3
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv 289 (337)
....|||+|||+.++++.|.+. ..+ -+|..+. ++..++||||+|.+.+.+..|+ ++.. .|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKY-----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3467999999999998876662 111 1233333 3567899999999966655554 4544 455555
Q ss_pred CCC
Q 019677 290 PPS 292 (337)
Q Consensus 290 v~~ 292 (337)
|..
T Consensus 87 V~~ 89 (103)
T 2dnm_A 87 VQV 89 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.29 E-value=0.0042 Score=47.93 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=45.7
Q ss_pred cccccCCcccccccccCCccch-hh-hhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh---hh--ccCCcc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EE-IEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD---EA--MFGASA 288 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~-Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D---gi--~fG~pt 288 (337)
....|||+|||+.++++.|.+. .. .- +|..|. .+..++||||+|.+.+.+..|+. +. +.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G-----~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP-----SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCT-----TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCC-----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 4467999999999998876662 11 21 233333 45678999999999777666654 43 456666
Q ss_pred cCCCCC
Q 019677 289 VPPSVS 294 (337)
Q Consensus 289 vv~~t~ 294 (337)
.|....
T Consensus 83 ~v~~a~ 88 (104)
T 2dhg_A 83 RLSVAI 88 (104)
T ss_dssp CCCBCC
T ss_pred EEEEcc
Confidence 666443
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.28 E-value=0.0017 Score=50.26 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=44.0
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhc-cC---Ccc
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAM-FG---ASA 288 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~-fG---~pt 288 (337)
...|||+|||+.++++.|.+. ...- +|..|. .+..++||||+|.+.+.+..|+ ++.. +| .++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFG-----VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 456999999999998876652 1111 133333 3456899999999977776665 4544 55 566
Q ss_pred cCCCCC
Q 019677 289 VPPSVS 294 (337)
Q Consensus 289 vv~~t~ 294 (337)
.|....
T Consensus 90 ~V~~a~ 95 (105)
T 2dnh_A 90 VVKFAD 95 (105)
T ss_dssp EEEESC
T ss_pred EEEECc
Confidence 665433
No 52
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.28 E-value=0.0019 Score=53.96 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=43.8
Q ss_pred cccccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhccC-CcccC
Q 019677 219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMFG-ASAVP 290 (337)
Q Consensus 219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~fG-~ptvv 290 (337)
......|||+||||.++++.|.+- ..+.+++.+..|.. ..+++++||||+|.+.+.+..|+. +..|+ -++.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 344566999999999999886661 12211100111111 136789999999999877777764 43443 34443
No 53
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.27 E-value=0.0057 Score=48.91 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=41.2
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
....|||+|||+.++++.|.+.- ... + +|+.|.|..+ +||||+|.+.+.+..|+ ++..|++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F--~~~-G-~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHM--REA-G-DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHH--GGG-S-CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH--Hhc-C-CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34679999999999998866521 111 1 4666676655 99999999977665554 4655554
No 54
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.22 E-value=0.0019 Score=51.46 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=42.7
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhcc-CCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMF-GASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~f-G~ptvv 290 (337)
...|||+|||+.++++.|.+. ..+..++.+..|.. ..+..++||||+|.+.+.+..|+. +..| |-++.|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 456899999999999886662 11211111122221 146789999999999777766653 4444 344444
No 55
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.22 E-value=0.003 Score=52.37 Aligned_cols=65 Identities=11% Similarity=-0.036 Sum_probs=42.9
Q ss_pred ccccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv 290 (337)
...|||||||+.++++.|.+.- ..- +|..|. .+.+++||||+|.+.+.+..|+ ++..| |.++.|
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G-----~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYG-----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHS-----CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3568999999999988866621 111 122222 5678899999999977766665 45444 455555
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 145 ~ 145 (158)
T 2kn4_A 145 Q 145 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.22 E-value=0.0051 Score=48.10 Aligned_cols=69 Identities=13% Similarity=-0.095 Sum_probs=44.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. ..+ -+|..|.| ...++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKY-----GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGG-----SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467999999999998876652 111 13444443 345779999999977766665 4444 555666654
Q ss_pred CC
Q 019677 293 VS 294 (337)
Q Consensus 293 t~ 294 (337)
..
T Consensus 96 a~ 97 (109)
T 1x4a_A 96 PR 97 (109)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.002 Score=49.31 Aligned_cols=66 Identities=6% Similarity=-0.028 Sum_probs=40.8
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG 285 (337)
.....|||||||+.++++.|.+. ...-.+..+..+.. ..+..++||||+|.+.+.+..|+ ++..|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 34567999999999999887662 11111110111111 24567899999999977766665 454443
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.0026 Score=49.23 Aligned_cols=69 Identities=9% Similarity=-0.089 Sum_probs=44.9
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFG-----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTS-----CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456899999999998876552 1111 233333 4477999999999977766664 4444 55666665
Q ss_pred CCC
Q 019677 292 SVS 294 (337)
Q Consensus 292 ~t~ 294 (337)
...
T Consensus 89 ~a~ 91 (103)
T 2d9p_A 89 LAQ 91 (103)
T ss_dssp ECS
T ss_pred Eec
Confidence 433
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.14 E-value=0.0025 Score=48.68 Aligned_cols=69 Identities=10% Similarity=0.002 Sum_probs=43.1
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeE--EecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV--KHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~--~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
...|||+|||+.++++.|.+. ..+-.+. +.++. ...+..++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456899999999998876652 1111111 11222 235678999999999977776665 34444 4444443
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.13 E-value=0.0014 Score=52.08 Aligned_cols=74 Identities=16% Similarity=0.023 Sum_probs=47.2
Q ss_pred hhhccccccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhh
Q 019677 213 LQLAETANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEA 282 (337)
Q Consensus 213 ~QL~~tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi 282 (337)
+.++........|||+|||+.++++.+.+. ..+- +|..+. .+..++||||+|.+.+.+..|+ ++.
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG-----RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTS-----CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 334455555677999999999998876552 1111 232332 3567899999999977766665 455
Q ss_pred c-cCCcccCC
Q 019677 283 M-FGASAVPP 291 (337)
Q Consensus 283 ~-fG~ptvv~ 291 (337)
. .|.++.|.
T Consensus 92 ~i~g~~l~V~ 101 (108)
T 2jrs_A 92 ELAGRPMKVG 101 (108)
T ss_dssp CSSSSCCEEE
T ss_pred EECCEEEEEE
Confidence 4 44555544
No 61
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.12 E-value=0.0021 Score=50.34 Aligned_cols=70 Identities=14% Similarity=0.045 Sum_probs=42.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhccCC-cccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMFGA-SAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~fG~-ptvv 290 (337)
....|||+|||+.++++.|.+. ..+-.+.....|.. ..++.++||||+|.+.+.+..|+. +..|++ ++.|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 3456899999999998876662 11111110011111 256789999999999877766654 444543 4433
No 62
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=95.10 E-value=0.0026 Score=48.25 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=42.9
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCcee-EEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAAL-VKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl-~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
...|||+|||+.++++.|.+. ...-.+..--++ ....+..++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 356899999999998876662 122112211121 1235678999999999977666554 45544 4444443
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.0018 Score=49.89 Aligned_cols=68 Identities=16% Similarity=0.037 Sum_probs=44.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt 288 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFG-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTS-----CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccC-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34567999999999998876652 1111 122222 4567999999999977766665 4554 45555
Q ss_pred cCCC
Q 019677 289 VPPS 292 (337)
Q Consensus 289 vv~~ 292 (337)
.|..
T Consensus 85 ~V~~ 88 (102)
T 2cqb_A 85 RVNL 88 (102)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 64
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.09 E-value=0.0024 Score=51.42 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=41.4
Q ss_pred ccccccCCcccccccccCCccch-hhhhhcc-CCce-eEE-ecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAA-LVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFGA 286 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie-~Dpv-l~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG~ 286 (337)
.....|+|+|||+.++++.|.+. ..+..+. ...| |.. ..++.++||||+|.+.+.+..|+ ++..|++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 34556899999999999886662 1111100 0111 111 13678999999999977776665 4555543
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.08 E-value=0.0018 Score=50.17 Aligned_cols=69 Identities=17% Similarity=0.100 Sum_probs=44.9
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~pt 288 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+. +.. .|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAG-----PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTS-----CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34466999999999998876652 1111 233333 45577899999999777766654 444 55566
Q ss_pred cCCCC
Q 019677 289 VPPSV 293 (337)
Q Consensus 289 vv~~t 293 (337)
.|...
T Consensus 88 ~v~~a 92 (105)
T 1x5u_A 88 RVNKA 92 (105)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 55543
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.05 E-value=0.0033 Score=48.02 Aligned_cols=68 Identities=15% Similarity=-0.003 Sum_probs=43.4
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEec---------CCcccchhhhhhhHhhHHHHh---hhhc-cCCc
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI---------GQSFRFSAIEARREEQIKAAH---DEAM-FGAS 287 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI---------nqsk~fA~vEFKseetvalA~---Dgi~-fG~p 287 (337)
...|||+|||+.++++.|.+. ..+- +|..|.| +..++||||+|.+.+.+..|+ ++.. .|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVG-----AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 456899999999998876662 1111 2233322 267899999999977766665 4444 4555
Q ss_pred ccCCCCC
Q 019677 288 AVPPSVS 294 (337)
Q Consensus 288 tvv~~t~ 294 (337)
+.|....
T Consensus 80 l~V~~a~ 86 (98)
T 2cpf_A 80 LEVRISE 86 (98)
T ss_dssp CEEECSS
T ss_pred EEEEEcc
Confidence 6555443
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.05 E-value=0.0023 Score=49.30 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=43.1
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt 288 (337)
.....|||+|||+.++++.|.+. ..+- +|..+. .+..++||||+|.+.+.+..|+ ++.. .|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYG-----QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHS-----CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567999999999998886662 1111 122222 4557889999999977766665 4544 45555
Q ss_pred cCC
Q 019677 289 VPP 291 (337)
Q Consensus 289 vv~ 291 (337)
.|.
T Consensus 85 ~v~ 87 (102)
T 1x5s_A 85 RVD 87 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 68
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.04 E-value=0.0038 Score=50.79 Aligned_cols=71 Identities=11% Similarity=-0.098 Sum_probs=45.2
Q ss_pred ccccccccCCcccccccccCCccchhhhhhccCCceeEEec--CCcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677 218 TANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI--GQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP 291 (337)
Q Consensus 218 tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI--nqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~ 291 (337)
.......|||||||+.++++.|.+.- ... +..|..+.| ..+++||||+|.+.+.+..|+ ++..|+ -++.|.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F--~~~-G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLA--REN-SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHH--HHH-TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH--HHh-CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34455679999999999988766621 110 112334444 368999999999977766665 455554 454443
No 69
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.00 E-value=0.0018 Score=51.20 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=40.5
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFGA 286 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG~ 286 (337)
....|||+|||+.++++.|.+. ..+-.+ +..|.. ..+++++||||+|.+.+.+..|+ ++..|+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 81 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQH 81 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECC
Confidence 3456899999999998876661 111111 112222 25678899999999977766665 4555543
No 70
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.97 E-value=0.0037 Score=49.20 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=40.8
Q ss_pred ccccccCCcccccccccCCccch-hhhhhcc-CCce-eEEe-cCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAA-LVKH-IGQSFRFSAIEARREEQIKAAH--DEAMFGA 286 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie-~Dpv-l~~q-Inqsk~fA~vEFKseetvalA~--Dgi~fG~ 286 (337)
.....|||+|||+.++++.|.+- ..+..+. ...| |..+ .++.++||||+|.+.+.+..|+ ++..|++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQ 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCC
Confidence 34456899999999999886661 1111000 0111 1111 2678899999999977766665 4555543
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.97 E-value=0.0027 Score=50.15 Aligned_cols=71 Identities=11% Similarity=-0.109 Sum_probs=43.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. ..+-.+. +..|.. ..+..++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467999999999998876662 1111010 111111 14667899999999977766665 4554 455555553
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.96 E-value=0.0047 Score=47.24 Aligned_cols=69 Identities=9% Similarity=-0.099 Sum_probs=44.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv 289 (337)
....|||+|||+.++++.|.+. ... -+|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY-----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT-----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3456899999999998876652 111 1233343 3557799999999977766665 4544 455665
Q ss_pred CCCCC
Q 019677 290 PPSVS 294 (337)
Q Consensus 290 v~~t~ 294 (337)
|....
T Consensus 82 V~~a~ 86 (99)
T 1whw_A 82 VLPST 86 (99)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 55433
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=94.95 E-value=0.0022 Score=49.69 Aligned_cols=69 Identities=12% Similarity=-0.048 Sum_probs=43.9
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc----cCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM----FGA 286 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~----fG~ 286 (337)
....|||+|||+.++++.|.+. ...- +|..|. ++..++||||+|.+.+.+..|+ ++.. .|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFG-----KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHS-----CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3456999999999999876662 1111 122222 4668899999999977766664 3433 355
Q ss_pred cccCCCCC
Q 019677 287 SAVPPSVS 294 (337)
Q Consensus 287 ptvv~~t~ 294 (337)
++.|....
T Consensus 87 ~l~v~~a~ 94 (106)
T 2dgp_A 87 PIQVKPAD 94 (106)
T ss_dssp CCEEEECC
T ss_pred eEEEEECC
Confidence 66655433
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=94.93 E-value=0.0032 Score=50.57 Aligned_cols=67 Identities=12% Similarity=-0.062 Sum_probs=43.4
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
....|||+|||+.++++.|.+. ...- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHG-----PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSS-----CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456899999999998876652 1111 122222 4567899999999977766665 4554 4556655
Q ss_pred CC
Q 019677 291 PS 292 (337)
Q Consensus 291 ~~ 292 (337)
..
T Consensus 81 ~~ 82 (116)
T 2fy1_A 81 EQ 82 (116)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=94.91 E-value=0.0019 Score=48.31 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=41.2
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHH--hhhhccC-CcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAA--HDEAMFG-ASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA--~Dgi~fG-~ptvv~ 291 (337)
...|||+|||+.++++.|.+. ...- +|..+ ..+..++||||+|.+.+.+..| +++..|+ .++.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG-----SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC-----CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEE
Confidence 356899999999998876651 1111 12222 2556799999999997665555 4455544 444443
No 76
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.89 E-value=0.0044 Score=48.67 Aligned_cols=72 Identities=11% Similarity=-0.071 Sum_probs=44.2
Q ss_pred cccccCCcccccccccCCccch-hhhhhccC-------CceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAED-------DAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGA 286 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~-------Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ 286 (337)
....|||+|||+.++++.|.+. ...-.+.. +..|.. ..+..++||||+|.+.+.+..|+ ++.. .|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 4456999999999998876662 12211211 111111 24567899999999977766554 4554 445
Q ss_pred cccCCC
Q 019677 287 SAVPPS 292 (337)
Q Consensus 287 ptvv~~ 292 (337)
++.|..
T Consensus 94 ~l~V~~ 99 (113)
T 2cpe_A 94 KLKVSL 99 (113)
T ss_dssp ECEEEC
T ss_pred EEEEEE
Confidence 555543
No 77
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=94.89 E-value=0.0026 Score=48.95 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=42.1
Q ss_pred cccccccCCcccccccccCCccch-hhhhhcc-----CCceeEE----ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677 219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAE-----DDAALVK----HIGQSFRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 219 A~adr~L~VGnipf~~tEealldN-~~Leaie-----~Dpvl~~----qInqsk~fA~vEFKseetvalA~---Dgi~fG 285 (337)
......|||||||+.++++.|.+. ...-.+. +.|++.+ ..+..++||||+|.+.+.+..|+ ++..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344566999999999998876662 1111111 1222222 24567899999999977766554 455544
Q ss_pred C
Q 019677 286 A 286 (337)
Q Consensus 286 ~ 286 (337)
+
T Consensus 90 g 90 (99)
T 2la6_A 90 G 90 (99)
T ss_dssp S
T ss_pred C
Confidence 3
No 78
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.86 E-value=0.002 Score=49.68 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=43.4
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+.- ... ....+.. ..+..++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F--~~~-~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESF--DGS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTS--TTC-SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHh--cCC-eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44669999999999988766521 111 1122222 25567899999999977766654 4544 455555543
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.86 E-value=0.0029 Score=47.08 Aligned_cols=60 Identities=7% Similarity=-0.157 Sum_probs=36.4
Q ss_pred cccCCcccccccc------cCCccchhhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHhh---hhccCC
Q 019677 223 ETKGSGWERFEFD------KDAPLDDEEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAHD---EAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~~t------EealldN~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~D---gi~fG~ 286 (337)
..|||||||+.++ ++.|.+. +... -+|..+. .+.+++||||+|.+.+.+..|+. +..|++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~--F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKI--FSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHH--HHTT--CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHH--Hhhc--CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 3589999999773 3333321 1100 1233333 45789999999999887777754 544443
No 80
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=94.86 E-value=0.0018 Score=55.20 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=43.1
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-CcccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv 290 (337)
....|||||||+.++++.|.+.- .......|+.|. ++.+++||||+|.+.+.+..|+ ++..|+ -++.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F--~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVI--RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHH--HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH--HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 44679999999999998876621 111000122222 5678999999999977776665 445544 45544
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 132 ~ 132 (156)
T 3n9u_C 132 R 132 (156)
T ss_dssp E
T ss_pred E
Confidence 4
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.85 E-value=0.0073 Score=47.52 Aligned_cols=67 Identities=6% Similarity=-0.152 Sum_probs=43.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. ... -+|..|.+ ..+++||||+|.+.+.+..|+ ++..| |.++.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY-----GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-----SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999998876552 111 12344443 567899999999977766554 45554 45555543
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.85 E-value=0.0068 Score=47.15 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=43.6
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHHhhh-----hc-cCCc
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAAHDE-----AM-FGAS 287 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA~Dg-----i~-fG~p 287 (337)
...|||||||+.++++.|.+. ... +..|..+.+ +..++||||+|.+.+.+..|+.. .. .|.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 456899999999998887662 111 111333333 37899999999998777766542 33 4555
Q ss_pred ccCCC
Q 019677 288 AVPPS 292 (337)
Q Consensus 288 tvv~~ 292 (337)
+.|..
T Consensus 84 l~V~~ 88 (109)
T 2dis_A 84 IAVDW 88 (109)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 55543
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.85 E-value=0.0041 Score=47.02 Aligned_cols=61 Identities=8% Similarity=-0.031 Sum_probs=40.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEec------CCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------GQSFRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------nqsk~fA~vEFKseetvalA~---Dgi~fG 285 (337)
.....|||+|||+.++++.|.+. ... -+|..+.+ +..++||||+|.+.+.+..|+ ++..|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY-----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT-----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34467999999999998876552 111 12333333 556889999999977766555 455443
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.85 E-value=0.0059 Score=47.15 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=43.3
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
.....|||+|||+.++++.|.+. ..+ -+|..|.| +..++||||+|.+.+.+..|+ ++.. .|.++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF-----GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT-----SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33466899999999998876552 111 12434443 345889999999977766665 4544 4555555
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 88 ~ 88 (103)
T 2cq3_A 88 N 88 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 85
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.85 E-value=0.0055 Score=48.18 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=40.8
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAMFG 285 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~fG 285 (337)
....|||+|||+.++++.|.+.- ... + +|+.|.|..+ +||||+|.+.+.+..|+. +..|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F--~~~-G-~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 76 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHM--REA-G-DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 76 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHH--GGG-S-CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH--Hhc-C-CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCcc
Confidence 34579999999999988765521 111 1 3666666555 999999999777666654 54443
No 86
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.81 E-value=0.0049 Score=46.54 Aligned_cols=67 Identities=9% Similarity=-0.053 Sum_probs=42.6
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~pt 288 (337)
.....|||+|||+.++++.|.+. ...- +|..+. .+..++||||+|.+.+.+..|+ ++..| |.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYG-----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTS-----CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-----CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34466899999999998876652 1111 233333 3567889999999977766664 44444 4454
Q ss_pred cCC
Q 019677 289 VPP 291 (337)
Q Consensus 289 vv~ 291 (337)
.|.
T Consensus 88 ~v~ 90 (95)
T 2cqc_A 88 RVS 90 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 87
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.78 E-value=0.0026 Score=46.30 Aligned_cols=56 Identities=5% Similarity=0.037 Sum_probs=36.3
Q ss_pred ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D 280 (337)
.|+|+|+|+.++++.+.+. ...-.+ .+..+.. ..+.+++||||+|.+.+.+..|+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 60 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCC-CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEecCCCCCCcCceEEEEEcCHHHHHHHHH
Confidence 4789999999998876651 111101 1111111 246788999999999877777765
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.77 E-value=0.0048 Score=50.70 Aligned_cols=69 Identities=9% Similarity=-0.107 Sum_probs=44.6
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt 288 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYG-----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTS-----CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 33456999999999998876652 1111 233333 3578899999999977766665 4554 45556
Q ss_pred cCCCC
Q 019677 289 VPPSV 293 (337)
Q Consensus 289 vv~~t 293 (337)
.|.-.
T Consensus 119 ~V~~a 123 (129)
T 2kxn_B 119 RVDFS 123 (129)
T ss_dssp EESCC
T ss_pred EEEEe
Confidence 55543
No 89
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.77 E-value=0.0018 Score=51.06 Aligned_cols=63 Identities=8% Similarity=-0.149 Sum_probs=40.4
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHH--hhhhccC-CcccC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAA--HDEAMFG-ASAVP 290 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA--~Dgi~fG-~ptvv 290 (337)
..|||+|||+.++++.|.+. ..+- .|..|. ++..++||||+|.+.+.+..| +++..|+ .++.|
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVG-----KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIV 98 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC-----CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEE
Confidence 56899999999998876652 1110 233333 367789999999996665544 4555544 34433
No 90
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.76 E-value=0.0043 Score=51.67 Aligned_cols=67 Identities=10% Similarity=-0.095 Sum_probs=43.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv 289 (337)
....|+|+|||+.++++.|.+. ..+- +|..|. ++..++||||+|.+.+.+..|+ ++.. .|.++.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSG-----DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3467999999999998876662 1111 233333 3567899999999977766665 4444 455555
Q ss_pred CCC
Q 019677 290 PPS 292 (337)
Q Consensus 290 v~~ 292 (337)
|..
T Consensus 113 V~~ 115 (156)
T 1h2v_Z 113 TDW 115 (156)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.76 E-value=0.0029 Score=47.13 Aligned_cols=61 Identities=3% Similarity=-0.112 Sum_probs=40.3
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCCc
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGAS 287 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~p 287 (337)
...|||+|||+.++++.|.+. ...- +|..+. .+..++||||+|.+.+.+..|+ ++..|++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYG-----KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTS-----CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 456899999999998876652 1111 233332 4567899999999977766554 46555543
No 92
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.0032 Score=47.79 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=43.7
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPS 292 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~ 292 (337)
...|||+|||+.++++.|.+. ...-.+..-..|.. ..+..++||||+|.+.+.+..|+. +.. .|.++.|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999998876662 11111111101222 356789999999999777666654 444 455665553
No 93
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.74 E-value=0.0047 Score=51.07 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=42.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhc--c-CCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAA--E-DDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMFGA 286 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leai--e-~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~fG~ 286 (337)
....|||+||||.++++.|.+- ..+-.+ . .+..|.. ..+++++||||+|.+.+.+..|+. +..|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 3456899999999999987772 122111 1 1222222 256789999999999777776664 444543
No 94
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=94.73 E-value=0.014 Score=50.65 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=43.5
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV 289 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv 289 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+.+++||||+|.+.+.+..|+ ++..| |.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTS-----CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 44567999999999998876652 1111 223333 3567899999999977766664 45444 44554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 161 V~ 162 (177)
T 2f3j_A 161 IQ 162 (177)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 95
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=94.73 E-value=0.0061 Score=46.60 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=41.8
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
..|||||||+.++++.|.+. ...- +|..+. .+..++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVG-----PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcC-----CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 46899999999998876652 1111 233333 3566899999999977766655 45554 4455444
No 96
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=94.71 E-value=0.0018 Score=58.42 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=43.0
Q ss_pred ccccCCcccccccccCCccch-hhhh--hccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIE--AAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Le--aie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~ 291 (337)
...|||+||++.++++.|.+. ..+- .|. +..|.. .++++++||||+|.+.+.+..|+. +.. .|-++.|.
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~-~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEE-EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 346999999999999887662 1111 010 111222 256789999999999777776654 444 44555554
No 97
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.66 E-value=0.0073 Score=45.59 Aligned_cols=68 Identities=10% Similarity=-0.093 Sum_probs=44.2
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhh-ccCCcccCCCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEA-MFGASAVPPSVS 294 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi-~fG~ptvv~~t~ 294 (337)
....|||+|||+.++++.|.+.- ... -+|..+.+. ++||||+|.+.+.+..|+ ++. +.|.++.|....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F--~~~--G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLF--EQY--GKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHH--HTS--SCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHH--HhC--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 34569999999999988765521 111 135555554 789999999977766655 454 455666555433
No 98
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.63 E-value=0.004 Score=52.63 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=42.5
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-cCCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-IGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP 290 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-Inqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv 290 (337)
.....|+|+|||+.++++.|.+. ..+-.+ +..|..+ .+++++||||+|.+.+.+..|+ ++..|+ -++.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence 34567999999999999887661 111111 1111111 3678999999999977776665 344444 34444
No 99
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=94.63 E-value=0.0056 Score=48.50 Aligned_cols=58 Identities=5% Similarity=-0.064 Sum_probs=37.9
Q ss_pred ccccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh
Q 019677 218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D 280 (337)
.......|||||||+.++++.|.+. ..+- +|..|. ++.+++||||+|.+.+.+..|+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFG-----EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccC-----CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3344567999999999998876652 1111 233333 36678999999999888777765
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.63 E-value=0.0025 Score=48.32 Aligned_cols=65 Identities=15% Similarity=-0.001 Sum_probs=42.2
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
...|||+|||+.++++.|.+. ...- +|..+. .+..++||||+|.+.+.+..|+ ++.. .|.++.|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFG-----KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-----CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 356899999999998876652 1111 233333 3567889999999977766664 4544 4556655
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 80 ~ 80 (95)
T 2dnz_A 80 G 80 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 101
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.63 E-value=0.0019 Score=50.04 Aligned_cols=66 Identities=15% Similarity=-0.041 Sum_probs=42.4
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPPS 292 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~~ 292 (337)
...|||+|||+.++++.|.+. +... + |+.|. ++..++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~--F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAI--FKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHH--TTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHH--HHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 456899999999998876551 1111 1 33333 3567889999999977766555 4544 444555543
No 102
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.62 E-value=0.0026 Score=51.39 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=39.5
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG~ 286 (337)
..|+|+|||+.++++.|.+- ..+. + .+..|.. ..+++++||||+|.+.+.+..|+ ++..|++
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~~-v-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 82 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGLR-V-DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQ 82 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTSC-C-CEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHhccCC-e-eEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 35899999999999887662 1221 1 1111111 13678999999999976665554 5555554
No 103
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.61 E-value=0.0028 Score=48.83 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=42.6
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
...|||+|||+.++++.|.+. ...-.+. +..+.. ..+..++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 356899999999998876652 1111010 111111 24567899999999977766665 3444 455555543
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.59 E-value=0.003 Score=49.40 Aligned_cols=66 Identities=17% Similarity=0.030 Sum_probs=42.6
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv 289 (337)
....|||+|||+.++++.|.+. ...- +|..|. .+..++||||+|.+.+.+..|+ ++..| |.++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYG-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3456999999999998876652 1111 233333 3566899999999977766554 45544 44554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 100 V~ 101 (110)
T 1oo0_B 100 VD 101 (110)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 105
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=94.58 E-value=0.0051 Score=51.07 Aligned_cols=70 Identities=11% Similarity=-0.147 Sum_probs=43.6
Q ss_pred cccccCCcccccccccCCccc-hhh-hhhccCCceeEE---ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLD-DEE-IEAAEDDAALVK---HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealld-N~~-Leaie~Dpvl~~---qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
....|||||||+.++++.|.+ ... +... | +|+.| ..+.+++||||+|.+.+.+..|+ +|.. +|-++.|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G-~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-G-DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-S-CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-C-CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 345699999999998876543 111 1110 0 12223 34578999999999977766665 4444 56677665
Q ss_pred C
Q 019677 292 S 292 (337)
Q Consensus 292 ~ 292 (337)
-
T Consensus 106 ~ 106 (127)
T 2a3j_A 106 F 106 (127)
T ss_dssp E
T ss_pred E
Confidence 3
No 106
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.54 E-value=0.006 Score=46.92 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=42.4
Q ss_pred ccCCcccccccccCCccch-hhhhhccCCceeEEecCC-cccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQ-SFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInq-sk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
.|||+|||+.++++.|.+. ...- +|..+.+.. .++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYG-----PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHC-----CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 4789999999998876662 1111 344445444 5999999999977766664 4444 555665553
No 107
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=94.54 E-value=0.0023 Score=51.36 Aligned_cols=65 Identities=5% Similarity=-0.137 Sum_probs=43.4
Q ss_pred ccccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
...|||+|||+.++++.|.+.- ..- +|..| .++.+++||||+|.+.+.+..|+ ++.. .|-++.|
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G-----~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYG-----EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC-----CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3568999999999988866621 110 12222 24788999999999977776664 4554 5556655
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 81 ~ 81 (110)
T 3s8s_A 81 Q 81 (110)
T ss_dssp E
T ss_pred E
Confidence 4
No 108
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.53 E-value=0.0025 Score=49.14 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=43.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. ..+-.+ -++....+..++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456999999999998876652 111111 1111135678999999999977766664 4444 455665543
No 109
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.50 E-value=0.0029 Score=48.88 Aligned_cols=66 Identities=14% Similarity=-0.119 Sum_probs=42.7
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
...|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFG-----SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTC-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-----CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456899999999998876662 1111 222332 4567889999999977766665 4444 4555555
Q ss_pred CC
Q 019677 291 PS 292 (337)
Q Consensus 291 ~~ 292 (337)
..
T Consensus 90 ~~ 91 (103)
T 2cq0_A 90 EW 91 (103)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.48 E-value=0.0026 Score=50.82 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=41.9
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh--hhhccC-CcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv~ 291 (337)
...|||+|||+.++++.|.+. ..+- +|..| ..+..++||||+|.+.+.+..|+ ++..|+ .++.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCG-----SINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTS-----CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 356999999999998876662 1111 12222 24677999999999977665554 455544 444443
No 111
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.47 E-value=0.0031 Score=52.97 Aligned_cols=67 Identities=16% Similarity=0.068 Sum_probs=44.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hh-ccCCccc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EA-MFGASAV 289 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi-~fG~ptv 289 (337)
.....|||||||+.++++.|.+. ..+- +|..|. .+.+++||||+|.+.+.+..|+. +. +.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWG-----TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 44567999999999999887662 1111 122222 35678999999999887777765 33 3455554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 86 v~ 87 (196)
T 1l3k_A 86 PK 87 (196)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 112
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.47 E-value=0.0063 Score=46.83 Aligned_cols=66 Identities=2% Similarity=-0.072 Sum_probs=42.1
Q ss_pred ccccCCcccccccccCCcc----chhhhhhccCCceeEEecCCc---ccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 222 DETKGSGWERFEFDKDAPL----DDEEIEAAEDDAALVKHIGQS---FRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEeall----dN~~Leaie~Dpvl~~qInqs---k~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
...|||||||+.++++.|. +. +... -+|..|.|..+ ++||||+|.+.+.+..|+ ++.. .|-++.|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~--F~~~--G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEA--FARH--GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHH--HHHH--SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh--cccc--CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3468999999999998876 31 1110 13444554322 889999999977766664 4554 4555555
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 85 ~ 85 (96)
T 2dgx_A 85 S 85 (96)
T ss_dssp E
T ss_pred E
Confidence 4
No 113
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.46 E-value=0.0077 Score=48.52 Aligned_cols=60 Identities=15% Similarity=-0.017 Sum_probs=40.2
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG 285 (337)
....|||+|||+.++++.|.+. ..+- +|..+. .+..++||||+|.+.+.+..|+ ++..|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFG-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcC-----CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567999999999998876652 1111 233333 3567999999999977766665 455444
No 114
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.46 E-value=0.0041 Score=47.81 Aligned_cols=65 Identities=12% Similarity=-0.021 Sum_probs=42.4
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
...|||+|||+.++++.|.+. ..+- +|..+. .+..++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHG-----TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-----CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456899999999998876652 1111 233333 3566799999999977766665 45554 4455443
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.43 E-value=0.0016 Score=48.84 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=38.2
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D 280 (337)
.....|||+|||+.++++.|.+. ...- +|..+. ++.+++||||+|.+.+.+..|+.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFG-----EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 34467999999999998876652 1111 122222 46778999999999777766664
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.0064 Score=46.65 Aligned_cols=67 Identities=7% Similarity=-0.117 Sum_probs=43.0
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
....|||+|||+.++++.|.+. ...-.+. +.+.++..++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~----~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP----LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC----SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE----EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457999999999998876652 1221121 12224688999999999977766554 45554 4455443
No 117
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=94.40 E-value=0.0027 Score=47.78 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=41.5
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~ 291 (337)
..|||||||+.++++.+.+. ...- +|..+. .+.+++||||+|.+.+ +..|+. +.. .|.++.|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG-----KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT-----CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC-----CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 35899999999999887762 1111 122222 4677999999999977 666653 444 45565554
Q ss_pred C
Q 019677 292 S 292 (337)
Q Consensus 292 ~ 292 (337)
.
T Consensus 76 ~ 76 (90)
T 2ki2_A 76 E 76 (90)
T ss_dssp E
T ss_pred E
Confidence 3
No 118
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=94.40 E-value=0.0025 Score=47.02 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=40.4
Q ss_pred ccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP 291 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~ 291 (337)
.|||+|||+.++++.|.+. ...- ++..+. .+..++||||+|.+.+.+..|+ ++..++ .++.|.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFP-----SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTST-----TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999998876652 1111 222222 4567999999999977766554 455544 454443
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=94.35 E-value=0.0066 Score=48.23 Aligned_cols=67 Identities=9% Similarity=-0.093 Sum_probs=42.6
Q ss_pred ccccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
.......|||||||+.++++.|.+. ...- +|..|.+. ++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-----~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFG-----PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTS-----CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3345567999999999998876551 1111 23344443 899999999977766554 45554 4455444
No 120
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.33 E-value=0.003 Score=47.88 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAV 289 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv 289 (337)
.....|||+|||+.++++.|.+. ..+- +|..+.| +..++||||+|.+.+.+..|+ ++.. .|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAG-----PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-----CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34567999999999998876652 1111 2333333 456889999999977766554 4444 444554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 89 V~ 90 (95)
T 2ywk_A 89 VS 90 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 121
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=94.32 E-value=0.0035 Score=46.46 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=40.9
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
.....|||+|||+.++++.|.+. ...- ++..+. .+..++||||+|.+.+.+..|+ ++..|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFG-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccC-----CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34567899999999998876552 1111 233333 4567899999999977766554 4555443
No 122
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.31 E-value=0.0051 Score=48.91 Aligned_cols=59 Identities=10% Similarity=-0.002 Sum_probs=38.9
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe--c---CCcccchhhhhhhHhhHHHHhhh
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH--I---GQSFRFSAIEARREEQIKAAHDE 281 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q--I---nqsk~fA~vEFKseetvalA~Dg 281 (337)
....|||||||+.++++.|.+. ...-.+. .++... . +.+++||||+|.+.+.+..|+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 4467999999999999886662 1111111 111111 2 47899999999998888777753
No 123
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.30 E-value=0.0044 Score=48.79 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=42.7
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv 289 (337)
....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++..| |.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFG-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456999999999998876662 1111 133333 4556889999999977766665 45554 44554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 89 V~ 90 (115)
T 2dgo_A 89 TN 90 (115)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 124
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.29 E-value=0.0028 Score=47.13 Aligned_cols=59 Identities=12% Similarity=-0.047 Sum_probs=38.9
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAMFG 285 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~fG 285 (337)
...|||+|||+.++++.|.+. ...- +|..+. .+..++||||+|.+.+.+..|+. +..|+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFG-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcC-----CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999998876652 1111 122222 45678999999999777666654 44444
No 125
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.28 E-value=0.0078 Score=47.55 Aligned_cols=70 Identities=10% Similarity=0.038 Sum_probs=41.5
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
....|||||||+.++++.|.+. ...-.+ .+..+..+.+..++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCC-SCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCE-EEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456899999999998876552 111100 011122223457899999999976665554 45544 4454443
No 126
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.26 E-value=0.0036 Score=52.98 Aligned_cols=67 Identities=16% Similarity=0.022 Sum_probs=43.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA 288 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt 288 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. ++..++||||+|.+.+.+..|+ ++.. .|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYG-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCC-----CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456999999999998876652 1111 233333 4456899999999977666554 4554 45555
Q ss_pred cCC
Q 019677 289 VPP 291 (337)
Q Consensus 289 vv~ 291 (337)
.|.
T Consensus 145 ~V~ 147 (165)
T 1rk8_A 145 QVD 147 (165)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 127
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.25 E-value=0.0089 Score=46.35 Aligned_cols=66 Identities=6% Similarity=-0.184 Sum_probs=43.6
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSV 293 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t 293 (337)
....|||+|||+.++++.|.+. ..+- +|..|.+. ++||||+|.+.+.+..|+ ++.. .|.++.|...
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-----~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFG-----KLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHS-----CEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3467999999999998876662 1221 34455554 569999999977766654 4444 5556655543
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.21 E-value=0.008 Score=45.67 Aligned_cols=69 Identities=7% Similarity=-0.158 Sum_probs=43.4
Q ss_pred cccccCCcccccccccCCccc-h-hhhhhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLD-D-EEIEAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealld-N-~~Leaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
....|||+|||+.++++.+.. . .-+... -+|..+.+ +..++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345689999999999887662 0 011111 13444444 467899999999977766664 4544 45555554
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=94.13 E-value=0.0047 Score=47.92 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=42.0
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV 289 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv 289 (337)
.....|||+|||+.++++.|.+. ..+- +|..+. .+..++||||+|.+.+.+..|+ ++..|+ .++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44567999999999998876552 1111 222332 4467899999999977765554 455544 3443
Q ss_pred C
Q 019677 290 P 290 (337)
Q Consensus 290 v 290 (337)
|
T Consensus 102 V 102 (107)
T 3ulh_A 102 I 102 (107)
T ss_dssp E
T ss_pred E
Confidence 3
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.0064 Score=46.70 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=44.3
Q ss_pred cccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCCCC
Q 019677 221 KDETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPSVS 294 (337)
Q Consensus 221 adr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~t~ 294 (337)
....|||||||+ .++++.|.+. ... -+|..+.+ .++||||+|.+.+.+..|+. +.. .|.++.|....
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~-----G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPY-----GHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTT-----CCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-----CCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 345699999999 9988876552 111 13444445 38999999999777666653 444 57777665443
No 131
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.07 E-value=0.0038 Score=50.81 Aligned_cols=65 Identities=8% Similarity=-0.082 Sum_probs=42.6
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
..|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYG-----PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHS-----CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 56999999999998876662 1111 122232 3567899999999977766665 4544 45555554
Q ss_pred C
Q 019677 292 S 292 (337)
Q Consensus 292 ~ 292 (337)
.
T Consensus 118 ~ 118 (139)
T 1u6f_A 118 L 118 (139)
T ss_dssp E
T ss_pred E
Confidence 3
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=94.05 E-value=0.0055 Score=50.64 Aligned_cols=66 Identities=12% Similarity=-0.037 Sum_probs=43.3
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv 290 (337)
...|||+|||+.++++.|.+. ..+- +|..+. .+..++||||+|.+.+.+..|+. +.. .|.++.|
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYG-----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGS-----CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 456999999999998886662 1111 122222 45778999999999777776653 444 4555555
Q ss_pred CC
Q 019677 291 PS 292 (337)
Q Consensus 291 ~~ 292 (337)
..
T Consensus 122 ~~ 123 (135)
T 2lea_A 122 QM 123 (135)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 133
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.05 E-value=0.0065 Score=45.69 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=38.1
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHhh
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~D 280 (337)
....|||||||+.++++.|.+. ... -+|..|.|- ..++||||+|.+.+.+..++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY-----GDVMDVFIPKPFRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT-----SCCCEEECCSSCCSCCEEECSCHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-----CCeeEEEEecCCCCEEEEEECCHHHHHHHhc
Confidence 3467999999999998876552 111 134555543 468999999999877765544
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.03 E-value=0.0032 Score=49.82 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=43.0
Q ss_pred cccCCcccccccccCCccchh-hhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCCCC
Q 019677 223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPPSV 293 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~~t 293 (337)
..|||+|||+.++++.|.+.- .+-.+ .+..|.. .++..++||||+|.+.+.+..|+. +.. .|.++.|...
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 568999999999988766521 11000 0111111 246678999999999877777764 333 4555555443
No 135
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=93.99 E-value=0.0036 Score=48.77 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=38.4
Q ss_pred ccccCCccccc------ccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 222 DETKGSGWERF------EFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 222 dr~L~VGnipf------~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
+..|+|+|||+ .++++.|.+. +... + +|..|. ++++++||||+|.+.+.+..|+ ++..|++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~--F~~~-G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSL--FSKA-G-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHH--HHTT-S-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHH--HHhc-C-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 45689999999 6666654441 1110 1 233333 3678999999999977666554 5665554
No 136
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=93.99 E-value=0.012 Score=45.57 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=44.0
Q ss_pred cccccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 219 ANKDETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 219 A~adr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
......|||||||+ .++++.|.+. ... -.|..+.+ .++||||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-----G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY-----GHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG-----SCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc-----CCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999998 9998876552 111 13555555 4899999999977766665 45554 5555543
No 137
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.93 E-value=0.011 Score=46.64 Aligned_cols=67 Identities=9% Similarity=-0.090 Sum_probs=42.0
Q ss_pred cccccCCcccccccccCCcc---ch-hhhhhccCCceeEEecC---------CcccchhhhhhhHhhHHHHh---hhhc-
Q 019677 221 KDETKGSGWERFEFDKDAPL---DD-EEIEAAEDDAALVKHIG---------QSFRFSAIEARREEQIKAAH---DEAM- 283 (337)
Q Consensus 221 adr~L~VGnipf~~tEeall---dN-~~Leaie~Dpvl~~qIn---------qsk~fA~vEFKseetvalA~---Dgi~- 283 (337)
....|||+|||+.++++.|. +. ...- +|..|.|. ..++||||+|.+.+.+..|+ ++..
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G-----~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG-----KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTS-----CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccC-----CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 34568999999999999876 41 1111 23333322 34579999999977766665 4444
Q ss_pred cCCcccCCC
Q 019677 284 FGASAVPPS 292 (337)
Q Consensus 284 fG~ptvv~~ 292 (337)
.|-++.|..
T Consensus 89 ~gr~l~V~~ 97 (111)
T 2cpi_A 89 DGRTLKASL 97 (111)
T ss_dssp TTEEEEEES
T ss_pred CCEEEEEEe
Confidence 455555543
No 138
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.90 E-value=0.0063 Score=47.71 Aligned_cols=66 Identities=8% Similarity=-0.042 Sum_probs=42.5
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv 290 (337)
....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++.. .|.++.|
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAG-----VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 3467999999999998876652 1111 233333 2456889999999977766554 4544 4555555
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 89 ~ 89 (114)
T 2do0_A 89 K 89 (114)
T ss_dssp E
T ss_pred E
Confidence 4
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=93.90 E-value=0.0045 Score=47.10 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=43.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~ 291 (337)
....|||+|||+.++++.|.+. ..+..+ . ++ ...+..++||||+|.+.+.+..|+. +.. .|.++.|.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v--~-~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEI--R-LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEE--C-CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcE--E-Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999998876652 111100 0 11 4567889999999999777776654 444 45555544
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=93.82 E-value=0.0071 Score=50.83 Aligned_cols=67 Identities=9% Similarity=0.038 Sum_probs=42.1
Q ss_pred cccccccCCcccccccccCCccch-hhhhhc--cCCceeEEe-cCCcccchhhhhhhHhhHHHHhh--hhccC
Q 019677 219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAA--EDDAALVKH-IGQSFRFSAIEARREEQIKAAHD--EAMFG 285 (337)
Q Consensus 219 A~adr~L~VGnipf~~tEealldN-~~Leai--e~Dpvl~~q-Inqsk~fA~vEFKseetvalA~D--gi~fG 285 (337)
......|+|+|||+.++++.|.+- ..+-.+ -.+..|..+ .+++++||||+|.+.+.+..|+. +..|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 344566899999999999887661 111110 011222221 36789999999999877766654 44444
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=93.82 E-value=0.0082 Score=47.08 Aligned_cols=63 Identities=10% Similarity=-0.044 Sum_probs=41.9
Q ss_pred cccCCcccccc-cccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 223 ETKGSGWERFE-FDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 223 r~L~VGnipf~-~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
..|||+|||+. ++++.|.+. ...- +|..|.+ .++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G-----~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYG-----RVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGS-----CCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCC-----CeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 56999999999 888776552 1111 3444555 7899999999976665554 5555 455555543
No 142
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=93.81 E-value=0.0098 Score=44.11 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=41.0
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEec------CC-cccchhhhhhhHhhHHHHh---hhhccC-CcccC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------GQ-SFRFSAIEARREEQIKAAH---DEAMFG-ASAVP 290 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------nq-sk~fA~vEFKseetvalA~---Dgi~fG-~ptvv 290 (337)
..|||+|||+.++++.|.+. ... -+|..+.+ +. .++||||+|.+.+.+..|+ ++..|+ .++.|
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTY-----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTT-----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC-----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 46899999999998876652 111 13334443 22 7899999999977765554 555544 44444
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 80 ~ 80 (88)
T 4a8x_A 80 T 80 (88)
T ss_dssp E
T ss_pred E
Confidence 3
No 143
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.76 E-value=0.0057 Score=46.19 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=41.6
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP 290 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv 290 (337)
....|+|+|||+.++++.|.+. ... .+. +..|.. ..++.++||||+|.+.+.+..|+ ++..|+ -++.|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v 81 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-Cce-EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence 3456899999999998876651 112 111 111111 24567899999999977766665 455544 34444
No 144
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=93.75 E-value=0.0046 Score=50.55 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=43.1
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhhh--hccCCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHDE--AMFGASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~Dg--i~fG~ptvv~ 291 (337)
...|||||||+.++++.|.+. ..+- +|..+. .+.+++||||+|.+.+.+..|+.. .+.|.++.|.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYG-----TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPK 76 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTC-----CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccc
Confidence 356899999999999886662 1110 233333 467789999999998888777762 2344444443
No 145
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.73 E-value=0.011 Score=53.17 Aligned_cols=66 Identities=11% Similarity=-0.043 Sum_probs=45.9
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
....|||||||+.++++.|.+. ..+ -+|..|.+..+++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERY-----GEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGG-----CCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-----CCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3356999999999998876652 111 13566777889999999999977766554 4555 44455444
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.0054 Score=49.67 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=41.7
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
+.|||+|||+.++++.|.+. ... + +|..+.+ +.+++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~----G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG----G-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG----S-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc----C-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEE
Confidence 35899999999998876662 111 1 2333333 567899999999977776665 4554 44555444
No 147
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.71 E-value=0.014 Score=44.77 Aligned_cols=68 Identities=6% Similarity=-0.085 Sum_probs=42.6
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. +.....-.|..+.+ .++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~--F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKE--FNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHH--HHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHH--HHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467999999999998876652 11110023444444 4779999999977766554 4544 455555543
No 148
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.70 E-value=0.0082 Score=46.06 Aligned_cols=56 Identities=5% Similarity=-0.059 Sum_probs=37.0
Q ss_pred ccccccccCCcccccccccCCccch-hhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHH
Q 019677 218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAA 278 (337)
Q Consensus 218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA 278 (337)
.......|||||||+.++++.|.+. ... -+|..|.|- .+++||||+|.+.+.+..+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~-----G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQY-----GEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTT-----SCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcc-----CCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3445567999999999999876552 111 135555543 4799999999997776633
No 149
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.55 E-value=0.0066 Score=47.71 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=38.1
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh---hhcc
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD---EAMF 284 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D---gi~f 284 (337)
..|||+|||+.++++.|.+. ...- +|..+. .+..++||||+|.+.+.+..|+. +..+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFG-----QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTS-----CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46899999999998876552 1111 122332 35678999999999777666654 5544
No 150
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.55 E-value=0.0038 Score=49.37 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=39.1
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAMFG 285 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~fG 285 (337)
...|||+|||+.++++.|.+. ..+ -+|..+. .+..++||||+|.+.+....|+. +..|+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPF-----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTS-----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356899999999998876652 111 0233333 35678999999999777666654 54444
No 151
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=93.49 E-value=0.037 Score=35.77 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=18.3
Q ss_pred CCcccccCCCCCCChHHHHHH
Q 019677 189 VDYSRLIEGYDHMTPAAIVKA 209 (337)
Q Consensus 189 ~d~~~~i~GfE~~TPAEkvka 209 (337)
..|+..++||||+||++++.+
T Consensus 6 ~~WDvpP~GyE~vtp~qykam 26 (28)
T 1jmt_B 6 KYWDVPPPGFEHITPMQYKAM 26 (28)
T ss_dssp CCBTCCCTTCTTSCHHHHHHT
T ss_pred cccCCCCCCccccCHHHHhhc
Confidence 379999999999999997754
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.34 E-value=0.013 Score=44.25 Aligned_cols=68 Identities=6% Similarity=-0.159 Sum_probs=42.2
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hh-hc-cCCcccCCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DE-AM-FGASAVPPSV 293 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dg-i~-fG~ptvv~~t 293 (337)
....|||+|||+.++++.|.+. ...- ..+..+.+ ..++||||+|.+.+.+..|+ ++ .. .|.++.|...
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK----LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT----CCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 3467999999999998876652 1111 11111112 46899999999977665554 45 44 5556655533
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.33 E-value=0.019 Score=43.25 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=42.4
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||+|||+.++++.|.+. ...- +|..+.+. ++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRG-----RVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHS-----CEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCC-----CEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4466899999999998876652 1221 25555554 449999999977766554 4554 445555543
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.32 E-value=0.0061 Score=53.18 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=38.1
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D 280 (337)
..|||||||+.++++.|.+. ...- +|+.|. ++.+++||||+|.+.+.+..|+.
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 75 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAG-----PILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhC-----CEEEEEEecccCCCCccccccceeCCHHHHHHHHH
Confidence 46999999999999887662 1111 233332 46788999999999888777754
No 155
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=93.26 E-value=0.013 Score=45.85 Aligned_cols=66 Identities=8% Similarity=-0.139 Sum_probs=39.4
Q ss_pred ccccCCccccccccc------CCccchhhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHh---hhhccCC--
Q 019677 222 DETKGSGWERFEFDK------DAPLDDEEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAH---DEAMFGA-- 286 (337)
Q Consensus 222 dr~L~VGnipf~~tE------ealldN~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~---Dgi~fG~-- 286 (337)
...|||||||+.+++ +.|.+. +... -+|..|. .+.+++||||+|.+.+.+..|+ ++..|++
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~--F~~~--G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKI--FSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHH--HGGG--SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHH--HhcC--CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 456999999997743 322221 1110 1233333 4578899999999976665554 4555554
Q ss_pred cccCC
Q 019677 287 SAVPP 291 (337)
Q Consensus 287 ptvv~ 291 (337)
++.|.
T Consensus 91 ~l~V~ 95 (105)
T 2nlw_A 91 TFRVN 95 (105)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55554
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.25 E-value=0.035 Score=42.20 Aligned_cols=67 Identities=7% Similarity=-0.156 Sum_probs=40.1
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHhh--hhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAHD--EAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~~ 292 (337)
....|||||||+.++++.|.+. ...- +|..|-+. .+..||||+|.+.+.+..|+. +.. .|.++.|..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-----~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-----PVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS-----CEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-----CeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 3457999999999998876652 1111 11122221 122299999999777666654 444 445666653
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=93.12 E-value=0.0068 Score=49.44 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=42.5
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP 290 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv 290 (337)
...|+|+|||+.++++.|.+. ...- +|..+. .+.+++||||+|.+.+.+..|+ ++..+ |.++.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIG-----PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTS-----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 356899999999998886662 1111 233333 4456789999999977776665 45554 445544
Q ss_pred C
Q 019677 291 P 291 (337)
Q Consensus 291 ~ 291 (337)
.
T Consensus 78 ~ 78 (168)
T 1b7f_A 78 S 78 (168)
T ss_dssp E
T ss_pred E
Confidence 4
No 158
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.03 E-value=0.0052 Score=47.39 Aligned_cols=56 Identities=9% Similarity=-0.025 Sum_probs=38.7
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D 280 (337)
.....|||||||+.++++.|.+. ...- +|..|. .+..++||||+|.+.+.+..|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYG-----SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 34467999999999998876652 1111 222333 35678999999999777777765
No 159
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=92.91 E-value=0.0098 Score=47.62 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=42.8
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV 289 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv 289 (337)
.....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+ ++..| |.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTS-----CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34457999999999998876652 1111 122222 3567899999999977766654 45554 44554
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 108 V~ 109 (124)
T 2kt5_A 108 IQ 109 (124)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.56 E-value=0.03 Score=46.17 Aligned_cols=55 Identities=15% Similarity=-0.015 Sum_probs=38.4
Q ss_pred cccccCC--cccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677 221 KDETKGS--GWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 221 adr~L~V--Gnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D 280 (337)
....||| ||+++.++++.|.+. ... | .|..+.|...++||||+|.+.+....|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G-~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKC----G-LVDALLMPPNKPYSFARYRTTEESKRAYV 81 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHH----S-CEEEEECCTTCSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhc----C-CeEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3456999 889999999876652 111 1 34555666679999999999776665543
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.40 E-value=0.021 Score=46.13 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=41.7
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
..|+|+|||+.++++.|.+. ...- ++..+. .+.+++||||+|.+.+.+..|+ ++..+ |.++.|.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G-----~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 77 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIG-----EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC-----CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence 46899999999998886662 1111 233332 4556799999999977776665 45544 4455444
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=92.37 E-value=0.014 Score=49.71 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=42.8
Q ss_pred cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~ptv 289 (337)
....|||+|||+.++++.|.+. ..+- +|..|. .+..++||||+|.+.+.+..|+. +.. .|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFG-----PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCC-----CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 3456999999999998887662 1111 233333 45689999999999777766654 544 455665
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 102 v~ 103 (216)
T 2qfj_A 102 VG 103 (216)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 163
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.90 E-value=0.022 Score=43.08 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=41.9
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
.....|||+|||+.++++.|.+. ... + +|..|.+. ++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY----G-PVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT----S-CCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34456899999999988876552 111 1 34445554 449999999976665554 4544 455555543
No 164
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=91.88 E-value=0.077 Score=46.62 Aligned_cols=66 Identities=6% Similarity=-0.155 Sum_probs=44.5
Q ss_pred cccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCc-ccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 221 KDETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQS-FRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqs-k~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
....|||+|||+ .++++.|.+. ... + +|..|.+-.+ ++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~----G-~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVY----G-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHH----T-CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhC----C-CeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345699999999 8998876652 111 1 2555665443 699999999977776665 3444 56666554
No 165
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.80 E-value=0.029 Score=50.29 Aligned_cols=72 Identities=8% Similarity=-0.149 Sum_probs=44.8
Q ss_pred ccccccCCcccccccccCCccc-h-hhhhhc-cCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLD-D-EEIEAA-EDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealld-N-~~Leai-e~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
.....|||+|||+.++++.|.. . +-+... +...|..+..+..++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4456799999999999887432 0 011110 1111222236678999999999977776665 3444 56666554
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.38 E-value=0.041 Score=44.72 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=42.0
Q ss_pred cCCcccccccccCCccc-hhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh----hhccCCcccCCCCC
Q 019677 225 KGSGWERFEFDKDAPLD-DEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD----EAMFGASAVPPSVS 294 (337)
Q Consensus 225 L~VGnipf~~tEealld-N~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D----gi~fG~ptvv~~t~ 294 (337)
|||+|||+.++++.|-. ...+=..=+=.|+.+ +.+||||+|.+.+....|+. .-+||-|+.|+-..
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 89999999999876443 111100001124333 34999999999888777754 34488888776433
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.22 E-value=0.026 Score=52.12 Aligned_cols=56 Identities=9% Similarity=-0.116 Sum_probs=36.9
Q ss_pred ccccccCCcccccccc---------cCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh
Q 019677 220 NKDETKGSGWERFEFD---------KDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH 279 (337)
Q Consensus 220 ~adr~L~VGnipf~~t---------EealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~ 279 (337)
.....||||||++.++ ++.|.+. +. +==+|..+.|-.+++||||+|.+.+.+..|+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~--F~--~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFV--FS--RLGDIDRIRYVESKNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHH--HH--TTSCEEEEEEEGGGTEEEEEESSHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHH--HH--ccCCEEEEEEECCCCEEEEEeCCHHHHHHHH
Confidence 3456799999999874 3322221 11 1124566666678999999999977766664
No 168
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=91.10 E-value=0.022 Score=46.59 Aligned_cols=53 Identities=11% Similarity=-0.029 Sum_probs=36.7
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEec------C--CcccchhhhhhhHhhHHHHhh
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------G--QSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------n--qsk~fA~vEFKseetvalA~D 280 (337)
..|||+|||+.++++.|.+. ...- +|..+.+ + .+++||||+|.+.+.+..|+.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 65 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYG-----AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 65 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHH
Confidence 46899999999999886662 1111 2333332 2 688999999999887776654
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=90.89 E-value=0.015 Score=47.37 Aligned_cols=63 Identities=10% Similarity=-0.078 Sum_probs=40.1
Q ss_pred cccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh--hhccC-CcccC
Q 019677 223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD--EAMFG-ASAVP 290 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D--gi~fG-~ptvv 290 (337)
..|+|+|+|+.++++.|.+.- ..- +|..+ ..+.+++||||+|.+.+.+..|+. +..|+ .++.|
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V 160 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQWG-----TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 160 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTTS-----CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEE
T ss_pred CeEEECCCCCCCCHHHHHHHHHhCc-----cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEE
Confidence 358999999999888766521 110 12222 246778999999999777766654 44443 34433
No 170
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=90.88 E-value=0.031 Score=48.63 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=42.5
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
..|+|+|||+.++++.|.+. ...-.+ .+..|..+.+..++||||+|.+.+.+..|+ ++..+ |.++.|.
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccceECCcccccHHHHHHHHHhhcCCe-EEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35899999999998876662 111100 011222334567899999999977776665 45554 4566554
No 171
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=89.87 E-value=0.069 Score=51.79 Aligned_cols=59 Identities=10% Similarity=-0.084 Sum_probs=40.5
Q ss_pred cccccccccCCcc--cccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677 217 ETANKDETKGSGW--ERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 217 ~tA~adr~L~VGn--ipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D 280 (337)
-.......||||| ++++++++.|.+.- .. | .|..+.+..+++||||+|.+.+....|++
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G-~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~ 74 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKC----G-LVDALLMPPNKPYSFARYRTTEESKRAYV 74 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTT----S-CEEEEECCTTCSEEEEEESSHHHHHHHHH
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----C-CeEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3345556799999 67889988876621 11 1 23445566689999999999777776654
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=89.83 E-value=0.022 Score=47.66 Aligned_cols=64 Identities=9% Similarity=-0.047 Sum_probs=41.1
Q ss_pred cccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~ 291 (337)
..|+|+|||+.++++.|.+.. ..- +|..+. .+..++||||+|.+.+.+..|+. +.. -|.++.|.
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQYG-----KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcCC-----CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEE
Confidence 568999999999888766521 111 122222 45678999999999877777764 333 34455444
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=89.76 E-value=0.052 Score=48.84 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=41.5
Q ss_pred cccccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677 219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP 290 (337)
Q Consensus 219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv 290 (337)
......|+|+|||+.++++.|.+. ..+- +|..|.| +.+++||||+|.+.+.+..|+ ++..|+ .++.|
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCG-----PIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 344567999999999998886662 1111 3444443 236899999999977766665 455544 34433
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=89.66 E-value=0.023 Score=49.74 Aligned_cols=65 Identities=8% Similarity=-0.245 Sum_probs=41.1
Q ss_pred cccCCcccccccccCCccchhhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~ 291 (337)
..|||+|||+.++++.|.+.- ... -+|..|. .+..++||||+|.+.+.+..|+. +.. -|.++.|.
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F--~~~--G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWL--EDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHH--TTS--CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred CEEEecCCCCcCCHHHHHHHH--hcC--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 568999999998887655411 100 0233332 25678999999999888777764 333 34455544
No 175
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.45 E-value=0.067 Score=40.84 Aligned_cols=65 Identities=6% Similarity=-0.118 Sum_probs=41.1
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
...|||+|+ .++++.|.+. +. .--+|..|.|...++||||+|.+.+.+..|+ ++.. .|.++.|..
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~--F~--~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGA--FS--PFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHH--HT--TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCEEEEcCC--CCCHHHHHHH--Hh--hCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 356899984 5555554331 11 1115777788899999999999977766665 4544 444555543
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=89.45 E-value=0.061 Score=45.64 Aligned_cols=66 Identities=9% Similarity=-0.064 Sum_probs=41.9
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv 289 (337)
....|+|+|||+.++++.|.+.. .+- .|..+. .+..++||||+|.+.+.+..|+ ++..|+ .++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFG-----KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccC-----CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 34568999999999888766521 111 233333 3456899999999977766554 455554 4544
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 199 V~ 200 (216)
T 2qfj_A 199 VG 200 (216)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.027 Score=45.47 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=38.1
Q ss_pred ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
.|+|+|+|+.++++.|.+. ...-.+. +..+.. ..+..++||||+|.+.+.+..|+ ++..|++
T Consensus 89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 89 NLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred eEEECCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 4889999999988776652 1111000 011111 24567889999999977766665 4555543
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=89.27 E-value=0.078 Score=44.82 Aligned_cols=65 Identities=6% Similarity=-0.180 Sum_probs=42.2
Q ss_pred cccCCccccc-ccccCCccchhhhhhccCCceeEEecCCc-ccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 223 ETKGSGWERF-EFDKDAPLDDEEIEAAEDDAALVKHIGQS-FRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnipf-~~tEealldN~~Leaie~Dpvl~~qInqs-k~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
..|||+|||+ .++++.|.+.- ... + +|..|.+-.+ ++||||+|.+.+.+..|+ ++.. .|.++.|.
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F--~~~-G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILF--GVY-G-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHH--HTT-C-CCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred cEEEEeCCCcccCCHHHHHHHH--Hhc-C-CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 5689999999 89988766521 111 1 2445555433 689999999977766664 4544 55566554
No 179
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=88.81 E-value=0.12 Score=45.29 Aligned_cols=66 Identities=6% Similarity=-0.175 Sum_probs=41.1
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEec--CCcccchhhhhhhHhhHHHHh---hhhcc-C--CcccCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI--GQSFRFSAIEARREEQIKAAH---DEAMF-G--ASAVPP 291 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI--nqsk~fA~vEFKseetvalA~---Dgi~f-G--~ptvv~ 291 (337)
..-.|||+|+++.++++.|.+.. .. + .|..+.| ...++||||||.+.+....|+ +|..| | .++.|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f----G-~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF----G-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH----S-CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc----C-CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34458999999999988766521 11 0 1223332 335679999999977666554 55554 4 455554
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=88.37 E-value=0.051 Score=44.35 Aligned_cols=53 Identities=8% Similarity=-0.153 Sum_probs=35.4
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD 280 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D 280 (337)
..|+|+|+|+.++++.|.+. ...- +|..+. .+.+++||||+|.+.+.+..|+.
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~G-----~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSFG-----QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhCC-----CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 45899999999988876552 1111 122222 34568999999999777766653
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.33 E-value=0.094 Score=43.56 Aligned_cols=64 Identities=8% Similarity=-0.102 Sum_probs=37.1
Q ss_pred ccCCcccccccccCCccchhhhhhccCCceeEEecCCcccc-hhhhhhhHhhHHHH---hhhhc-cC--CcccCC
Q 019677 224 TKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRF-SAIEARREEQIKAA---HDEAM-FG--ASAVPP 291 (337)
Q Consensus 224 ~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~f-A~vEFKseetvalA---~Dgi~-fG--~ptvv~ 291 (337)
.|||||+++.++++.|.+.- ..- | .|..+.|-...+| |||||.+.+....| |+|.. +| .++.|.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~F--s~y-G-~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVC--NPV-G-KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHH--TTT-S-CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHH--Hhc-C-CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 46899999999988755521 100 0 1222222111376 99999996665555 45554 45 255554
No 182
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.12 E-value=0.1 Score=39.46 Aligned_cols=65 Identities=3% Similarity=-0.152 Sum_probs=39.6
Q ss_pred ccccCCcccccccccCCccch-hhhhhccCCceeEE-ec--CCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HI--GQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qI--nqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
...|||||||+.++++.|.+. ...- +|..| .+ ....+.|||+|.+.+.+..|+ ++..| |.++.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYG-----VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHS-----CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcC-----CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456999999999998876652 1111 23333 22 233334999999977666554 45554 4455444
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=87.97 E-value=0.06 Score=48.39 Aligned_cols=73 Identities=8% Similarity=0.018 Sum_probs=44.5
Q ss_pred ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh----hhcc----CCcccCCC
Q 019677 222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD----EAMF----GASAVPPS 292 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D----gi~f----G~ptvv~~ 292 (337)
...|+|+|+|+.++++.|.+.. .+-.+..--++....+.+++||||+|.+.+.+..|+. +.++ |-|++|..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 3568999999999887765521 1110100011111245679999999999877766654 4444 66776654
Q ss_pred CC
Q 019677 293 VS 294 (337)
Q Consensus 293 t~ 294 (337)
..
T Consensus 176 ~~ 177 (261)
T 3sde_A 176 ME 177 (261)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=87.85 E-value=0.056 Score=44.58 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=39.2
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeE-EecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV-KHIGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~-~qInqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
..|+|+|+|+.++++.|.+. ..+ + .|.. ...+.+++||||+|.+.+.+..|+ ++..|++
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~----g-~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDA----L-EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTC----S-EEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----C-eEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45899999999888776552 111 1 1222 345688999999999977766665 4555543
No 185
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=87.30 E-value=0.065 Score=43.81 Aligned_cols=59 Identities=12% Similarity=-0.039 Sum_probs=38.2
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
..|+|+|+|+.++++.+.+. ...- ++..+. .+.+++||||+|.+.+.+..|+ ++..|++
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFG-----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTS-----CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcC-----CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 55889999999888776552 1111 222222 4566899999999977766554 4555543
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=86.83 E-value=0.13 Score=45.90 Aligned_cols=60 Identities=10% Similarity=-0.179 Sum_probs=39.9
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEecCCc-ccchhhhhhhHhhHHHHh---hhhccC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQS-FRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqs-k~fA~vEFKseetvalA~---Dgi~fG 285 (337)
....|||+|||+.++++.|.+.. .. -.|..+.+-.. ++|+||+|.+.+....|+ ++..|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~-----G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF-----PGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc-----CCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 34569999999999888766521 11 13444554443 489999999977766665 455544
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=86.40 E-value=0.099 Score=42.13 Aligned_cols=59 Identities=7% Similarity=-0.095 Sum_probs=38.5
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
..|+|+|+|+.++++.|.+. ...- ++..+. .+..++||||+|.+.+.+..|+ ++..|++
T Consensus 89 ~~l~v~nl~~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFSQYG-----RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CcEEECCCCCcCCHHHHHHHHHhcC-----CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 45899999998888775552 1111 122222 3456899999999977766664 4666654
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=85.97 E-value=0.11 Score=42.07 Aligned_cols=66 Identities=8% Similarity=-0.096 Sum_probs=40.0
Q ss_pred cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677 221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS 292 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~ 292 (337)
....|||||+ .++++.|.+. +.. --+|..|.+...++||||+|.+.+.+..|+ ++.. .|.++.|.-
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~--F~~--~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGA--FSP--FGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHH--HST--TCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHH--HHc--cCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4456899984 4555543331 111 113555566789999999999977766665 4554 445555543
No 189
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=85.18 E-value=0.048 Score=45.63 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=41.2
Q ss_pred cccccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677 221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV 289 (337)
Q Consensus 221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv 289 (337)
....|+|+|+|+.++++.|.+.. ..- +|..+. .+.+++||||+|.+.+.+..|+ ++..|+ .++.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G-----~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFG-----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBS-----CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-----CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34568999999999887765521 111 122222 4566899999999966665554 455554 4444
Q ss_pred CC
Q 019677 290 PP 291 (337)
Q Consensus 290 v~ 291 (337)
|.
T Consensus 188 v~ 189 (198)
T 2yh0_A 188 VQ 189 (198)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=84.24 E-value=0.31 Score=42.68 Aligned_cols=61 Identities=8% Similarity=-0.088 Sum_probs=41.4
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEec-CCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-GQSFRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-nqsk~fA~vEFKseetvalA~---Dgi~fG 285 (337)
...|+|+|+|+.++++.|.+.. ... +-.|..+.+ ..+++||||+|.+.+.+..|+ ++..|+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f--~~~-G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLF--SSN-GGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHH--HTT-SCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCEEEEeCCCccCCHHHHHHHH--HHc-CCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 4678999999998887655521 111 213555565 568999999999977766664 466554
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=84.23 E-value=0.13 Score=45.10 Aligned_cols=64 Identities=6% Similarity=-0.032 Sum_probs=37.4
Q ss_pred cccCCcccccccccCCccch-hhhhhccCCceeE-EecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677 223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV-KHIGQSFRFSAIEARREEQIKAAH---DEAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~-~qInqsk~fA~vEFKseetvalA~---Dgi~fG~ 286 (337)
..|||+|||+.++++.|.+. ...-.+....|.. ...+..++||||+|.+.+....|+ ++..+++
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 45999999999998876652 1111110011111 112345689999999976665554 4555443
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=84.15 E-value=0.097 Score=46.85 Aligned_cols=71 Identities=13% Similarity=-0.016 Sum_probs=42.5
Q ss_pred ccccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677 220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP 291 (337)
Q Consensus 220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~ 291 (337)
.....|+|+|+|+.++++.|.+. ...-.+. ...+.. ..+.+++||||+|.+.+.+..|+ ++..+ |.++.|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456899999999988876652 1111000 011111 25667899999999977766665 45544 4455443
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=83.67 E-value=0.23 Score=41.84 Aligned_cols=61 Identities=8% Similarity=-0.088 Sum_probs=40.4
Q ss_pred ccccCCcccccccccCCccchhhhhhccCCceeEEec-CCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677 222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-GQSFRFSAIEARREEQIKAAH---DEAMFG 285 (337)
Q Consensus 222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-nqsk~fA~vEFKseetvalA~---Dgi~fG 285 (337)
...|+|+|+|+.++++.|.+.. ... +-++..+.+ ...++||||+|.+.+.+..|+ ++..++
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f--~~~-G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLF--SSN-GGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHH--HHT-TSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred ccEEEEeCCCCCCCHHHHHHHH--HHc-CCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4668999999999887765521 111 213444454 457899999999977766664 455554
No 194
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=83.51 E-value=0.3 Score=41.04 Aligned_cols=72 Identities=7% Similarity=-0.088 Sum_probs=42.1
Q ss_pred hccccccccccCCcccccccccCCccchh-hhhhccCCceeEEec-CCcccc-hhhhhhhHhhHHHHh---hhhc-cC--
Q 019677 215 LAETANKDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI-GQSFRF-SAIEARREEQIKAAH---DEAM-FG-- 285 (337)
Q Consensus 215 L~~tA~adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI-nqsk~f-A~vEFKseetvalA~---Dgi~-fG-- 285 (337)
+.......-.+||+|+++.++++.|.+.- ..- +|..+.| ...++| |||||.+.+....|+ +|.. +|
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG-----~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFG-----TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSS-----CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcC-----CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 33344455567899999999988765521 110 1322222 345788 999999977666664 4554 56
Q ss_pred CcccCC
Q 019677 286 ASAVPP 291 (337)
Q Consensus 286 ~ptvv~ 291 (337)
.++-|+
T Consensus 96 ~~LrI~ 101 (130)
T 3zzy_A 96 CTLRID 101 (130)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 344444
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=83.18 E-value=0.18 Score=45.30 Aligned_cols=59 Identities=8% Similarity=-0.007 Sum_probs=37.8
Q ss_pred cccCCcccccc-cccCCccchh-hhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677 223 ETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAAH--DEAMFGA 286 (337)
Q Consensus 223 r~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA~--Dgi~fG~ 286 (337)
..|+|+|||+. ++++.|.+.. ..- +|..+.+ +..++||||+|.+.+.+..|+ ++..|++
T Consensus 211 ~~l~v~nlp~~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g 280 (292)
T 2ghp_A 211 REIMIRNLSTELLDENLLRESFEGFG-----SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGN 280 (292)
T ss_dssp TEEEEEEECTTTCCHHHHHHHHGGGS-----CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETT
T ss_pred ceEEEECCCcccCCHHHHHHHHhccC-----CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECC
Confidence 45899999999 8887766521 111 2333333 667899999999976665554 4554443
No 196
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=81.18 E-value=0.13 Score=41.61 Aligned_cols=58 Identities=9% Similarity=-0.051 Sum_probs=36.9
Q ss_pred cccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc
Q 019677 223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF 284 (337)
Q Consensus 223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f 284 (337)
..|+|+|+|+.++++.|.+.- ... + +|..+. .+..++||||+|.+.+.+..|+ ++..|
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f--~~~-G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIF--GKY-G-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHH--TSS-S-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCEEEeCCCCCCCHHHHHHhh--hcC-C-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 458899999988887655511 100 0 222222 3456799999999977766664 46555
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=80.74 E-value=0.4 Score=42.05 Aligned_cols=65 Identities=8% Similarity=-0.127 Sum_probs=41.8
Q ss_pred cccCCcccc-cccccCCccchhhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677 223 ETKGSGWER-FEFDKDAPLDDEEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP 291 (337)
Q Consensus 223 r~L~VGnip-f~~tEealldN~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~ 291 (337)
..||||||| +.++++.|.+.- ... | .|+.|.|- ..++||||+|.+.+.+..|+ ++.. +|-++.|.
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F--~~~-G-~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVF--CLY-G-NVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHH--TTT-S-CEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEEeCCCcccCCHHHHHHHH--Hhc-C-CeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 458999999 788888655521 100 1 34455543 35799999999977776664 4544 55566554
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.45 E-value=2.8 Score=33.14 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=27.7
Q ss_pred eeEEec-CCcccchhhhhhhHhhHHHHhhh--hccCCcccCC
Q 019677 253 ALVKHI-GQSFRFSAIEARREEQIKAAHDE--AMFGASAVPP 291 (337)
Q Consensus 253 vl~~qI-nqsk~fA~vEFKseetvalA~Dg--i~fG~ptvv~ 291 (337)
|..|.| ...++||||+|.+.+.+..|+.. .++|.|+.|.
T Consensus 44 V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~ 85 (100)
T 2d9o_A 44 VLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKIS 85 (100)
T ss_dssp EEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEE
T ss_pred EEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEE
Confidence 445554 58899999999998887777763 2356666654
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=62.31 E-value=0.45 Score=40.91 Aligned_cols=44 Identities=7% Similarity=-0.108 Sum_probs=30.3
Q ss_pred ccCCccc----ccccccCCccch-hhh-hhc----cCCceeEEecCCcccchhhhhhh
Q 019677 224 TKGSGWE----RFEFDKDAPLDD-EEI-EAA----EDDAALVKHIGQSFRFSAIEARR 271 (337)
Q Consensus 224 ~L~VGni----pf~~tEealldN-~~L-eai----e~Dpvl~~qInqsk~fA~vEFKs 271 (337)
.|||||+ |+.++++.|-+. ... ++. -.||. ++.+++|+||+|.+
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~----Tg~slGfgfVef~d 57 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN----SALPLHVYLIKYAS 57 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT----TCCEEEEEEEECC-
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC----CCceeeEEEEEECC
Confidence 4789999 998888876652 111 111 13443 88999999999994
No 200
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.26 E-value=3.3 Score=34.78 Aligned_cols=67 Identities=7% Similarity=-0.126 Sum_probs=44.7
Q ss_pred ccccCCcccccccccCCccc-hhhhhhccCCceeEEecCCcccchhhhhhhHhh---HHHHhhhhccCCcc
Q 019677 222 DETKGSGWERFEFDKDAPLD-DEEIEAAEDDAALVKHIGQSFRFSAIEARREEQ---IKAAHDEAMFGASA 288 (337)
Q Consensus 222 dr~L~VGnipf~~tEealld-N~~Leaie~Dpvl~~qInqsk~fA~vEFKseet---valA~Dgi~fG~pt 288 (337)
++.+.+-|||=.++.+.+.. .+....++..++.-..+-.+.+-|+|||.++.. +.||++|..|++-+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 34455556766666554433 223334455667777788999999999999555 56788999988543
No 201
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.08 E-value=4.8 Score=33.42 Aligned_cols=54 Identities=2% Similarity=-0.168 Sum_probs=35.4
Q ss_pred ccCCcccccc-cccCCccchhhhhhccCCceeEEecCCcccchhhhhhh-HhhHHHHhhh
Q 019677 224 TKGSGWERFE-FDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARR-EEQIKAAHDE 281 (337)
Q Consensus 224 ~L~VGnipf~-~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKs-eetvalA~Dg 281 (337)
-|+|+|++.. ++.+.+.+ -+. +--+|..|.+.....++||+|.+ +.....|+..
T Consensus 20 il~v~~l~~~~~sredLke--~F~--~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHI--LFS--NHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp EEEEEESCCSSCCHHHHHH--HTC--SSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHH
T ss_pred EEEEecCCCCcCCHHHHHH--HHH--hcCCEEEEEEecCCCEEEEEECCChHHHHHHHHH
Confidence 3678888887 66554333 111 11268888887777789999999 5555555543
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=44.81 E-value=10 Score=29.73 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=20.9
Q ss_pred CcccchhhhhhhHhhHHHH---hhhhccCCc
Q 019677 260 QSFRFSAIEARREEQIKAA---HDEAMFGAS 287 (337)
Q Consensus 260 qsk~fA~vEFKseetvalA---~Dgi~fG~p 287 (337)
.+++|+||+|.+.+....| ++|..|++-
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 4689999999997666555 567777753
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=38.06 E-value=13 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=20.7
Q ss_pred CcccchhhhhhhHhhHHHH---hhhhccCCc
Q 019677 260 QSFRFSAIEARREEQIKAA---HDEAMFGAS 287 (337)
Q Consensus 260 qsk~fA~vEFKseetvalA---~Dgi~fG~p 287 (337)
++++|+||+|.+.+....| ++|..|++-
T Consensus 66 ~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp SSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 5689999999997766555 457666653
No 204
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=35.27 E-value=17 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCcccchhhhhhhHhhHHHH---hhhhccCCc
Q 019677 259 GQSFRFSAIEARREEQIKAA---HDEAMFGAS 287 (337)
Q Consensus 259 nqsk~fA~vEFKseetvalA---~Dgi~fG~p 287 (337)
+.+++|+||+|.+.+....| ++|..|++-
T Consensus 53 ~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 53 DDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp TTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 36789999999997665555 467776653
No 205
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.19 E-value=28 Score=26.83 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=22.3
Q ss_pred CcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677 260 QSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP 291 (337)
Q Consensus 260 qsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~ 291 (337)
.+++|+||+|.+.+.+..|+ ++..|+ -++.|.
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~ 97 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 97 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 47999999999977766665 455554 455444
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=24.35 E-value=30 Score=27.68 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=20.6
Q ss_pred CcccchhhhhhhHhhHHHH---hhhhccCCc
Q 019677 260 QSFRFSAIEARREEQIKAA---HDEAMFGAS 287 (337)
Q Consensus 260 qsk~fA~vEFKseetvalA---~Dgi~fG~p 287 (337)
..++|+||+|.+.+....| ++|..|++-
T Consensus 53 ~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 53 SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3589999999997665555 567777653
Done!