Query 019679
Match_columns 337
No_of_seqs 175 out of 1283
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 6.7E-32 1.4E-36 242.1 26.3 333 2-334 327-666 (759)
2 KOG0211 Protein phosphatase 2A 99.9 1.4E-26 3E-31 208.1 20.2 333 2-334 248-627 (759)
3 KOG2023 Nuclear transport rece 99.9 1.4E-25 3.1E-30 192.1 20.8 333 2-337 101-510 (885)
4 KOG2171 Karyopherin (importin) 99.9 4.6E-23 9.9E-28 187.5 31.4 328 3-331 92-460 (1075)
5 PRK09687 putative lyase; Provi 99.9 3.8E-22 8.3E-27 163.4 24.0 254 31-329 24-279 (280)
6 PRK13800 putative oxidoreducta 99.9 4.9E-22 1.1E-26 188.6 26.4 265 2-329 632-896 (897)
7 KOG2171 Karyopherin (importin) 99.9 9.9E-21 2.2E-25 172.4 32.5 336 1-336 128-553 (1075)
8 KOG2023 Nuclear transport rece 99.9 3.8E-22 8.3E-27 171.3 17.5 333 2-336 366-736 (885)
9 PRK09687 putative lyase; Provi 99.9 1.2E-20 2.6E-25 154.6 22.0 244 2-290 34-279 (280)
10 KOG1242 Protein containing ada 99.9 3.6E-19 7.8E-24 153.1 27.4 329 3-336 108-448 (569)
11 KOG1241 Karyopherin (importin) 99.9 5.3E-19 1.1E-23 154.4 27.6 331 3-335 102-480 (859)
12 PRK13800 putative oxidoreducta 99.8 5E-19 1.1E-23 168.2 23.4 244 31-330 622-865 (897)
13 KOG1240 Protein kinase contain 99.8 2.6E-19 5.6E-24 163.0 18.8 270 5-274 437-745 (1431)
14 KOG0213 Splicing factor 3b, su 99.8 6.2E-18 1.3E-22 147.4 25.1 321 2-331 727-1064(1172)
15 KOG1240 Protein kinase contain 99.8 2.7E-17 5.9E-22 150.1 22.7 291 31-335 423-728 (1431)
16 KOG0213 Splicing factor 3b, su 99.8 3.9E-16 8.5E-21 136.4 25.4 317 2-330 810-1140(1172)
17 PF01602 Adaptin_N: Adaptin N 99.8 3.8E-16 8.3E-21 142.2 25.8 317 3-336 54-373 (526)
18 KOG1242 Protein containing ada 99.8 6.9E-16 1.5E-20 133.1 23.4 316 5-325 189-516 (569)
19 KOG0212 Uncharacterized conser 99.7 7.6E-16 1.7E-20 130.7 22.5 334 1-335 10-368 (675)
20 COG5181 HSH155 U2 snRNP splice 99.7 8.2E-16 1.8E-20 131.9 22.9 177 147-331 688-869 (975)
21 KOG1241 Karyopherin (importin) 99.7 6E-15 1.3E-19 129.4 28.4 333 2-336 337-715 (859)
22 PLN03200 cellulose synthase-in 99.7 5.7E-15 1.2E-19 145.2 30.0 327 4-335 417-767 (2102)
23 KOG0166 Karyopherin (importin) 99.7 5.4E-15 1.2E-19 126.9 24.0 328 7-334 82-438 (514)
24 PF01602 Adaptin_N: Adaptin N 99.7 1.2E-14 2.7E-19 132.4 26.7 295 22-333 36-334 (526)
25 COG5181 HSH155 U2 snRNP splice 99.7 1.9E-14 4.1E-19 123.7 25.5 313 2-326 615-941 (975)
26 KOG0166 Karyopherin (importin) 99.7 1.8E-14 3.8E-19 123.8 23.7 302 31-333 67-394 (514)
27 PLN03200 cellulose synthase-in 99.7 4.9E-14 1.1E-18 138.8 29.8 326 3-333 458-812 (2102)
28 COG5215 KAP95 Karyopherin (imp 99.7 2.5E-13 5.3E-18 116.0 29.2 331 3-335 106-482 (858)
29 KOG1824 TATA-binding protein-i 99.7 7.5E-14 1.6E-18 125.2 26.4 323 9-333 231-639 (1233)
30 KOG0212 Uncharacterized conser 99.7 4.6E-14 1E-18 120.1 23.1 295 2-297 95-410 (675)
31 KOG0915 Uncharacterized conser 99.7 7.2E-14 1.6E-18 130.9 26.3 327 3-331 969-1343(1702)
32 PTZ00429 beta-adaptin; Provisi 99.7 1E-12 2.3E-17 120.5 33.0 299 28-335 66-400 (746)
33 PTZ00429 beta-adaptin; Provisi 99.6 2.3E-12 5E-17 118.3 31.8 295 4-314 81-416 (746)
34 KOG1824 TATA-binding protein-i 99.6 1.3E-12 2.8E-17 117.5 26.9 331 5-336 188-603 (1233)
35 PF10508 Proteasom_PSMB: Prote 99.5 1E-10 2.3E-15 104.7 31.3 302 32-333 40-367 (503)
36 COG1413 FOG: HEAT repeat [Ener 99.5 3.1E-11 6.7E-16 103.5 24.3 184 31-252 44-240 (335)
37 KOG2259 Uncharacterized conser 99.5 3.1E-11 6.8E-16 105.0 23.9 243 78-329 167-472 (823)
38 KOG0915 Uncharacterized conser 99.5 3.3E-11 7.1E-16 113.6 25.8 333 1-334 1008-1429(1702)
39 COG5215 KAP95 Karyopherin (imp 99.5 1.6E-10 3.4E-15 99.3 27.1 333 2-336 339-715 (858)
40 PF10508 Proteasom_PSMB: Prote 99.5 1.8E-10 3.9E-15 103.2 28.0 323 9-333 56-421 (503)
41 COG1413 FOG: HEAT repeat [Ener 99.5 4.7E-11 1E-15 102.4 23.0 267 2-330 54-333 (335)
42 TIGR02270 conserved hypothetic 99.4 8.6E-11 1.9E-15 101.2 23.2 240 31-331 55-295 (410)
43 KOG4224 Armadillo repeat prote 99.4 8.7E-12 1.9E-16 101.3 15.6 328 5-333 99-447 (550)
44 KOG1243 Protein kinase [Genera 99.4 6.3E-12 1.4E-16 110.5 15.4 254 80-335 265-518 (690)
45 COG5240 SEC21 Vesicle coat com 99.4 8.1E-11 1.8E-15 101.1 20.8 292 28-331 262-554 (898)
46 COG5064 SRP1 Karyopherin (impo 99.4 1.4E-11 3E-16 99.3 15.3 304 30-333 114-444 (526)
47 PF12348 CLASP_N: CLASP N term 99.4 7.2E-11 1.6E-15 95.4 19.4 143 190-335 57-209 (228)
48 COG5064 SRP1 Karyopherin (impo 99.4 3.3E-11 7.1E-16 97.2 16.7 302 31-332 72-398 (526)
49 KOG4224 Armadillo repeat prote 99.4 4.6E-11 1E-15 97.2 17.6 329 3-331 138-492 (550)
50 KOG1243 Protein kinase [Genera 99.4 1.2E-11 2.6E-16 108.8 15.1 258 37-296 261-518 (690)
51 PF12348 CLASP_N: CLASP N term 99.4 8.1E-11 1.8E-15 95.1 18.5 189 108-298 7-211 (228)
52 KOG2259 Uncharacterized conser 99.4 5.8E-11 1.3E-15 103.3 16.5 252 29-291 197-473 (823)
53 TIGR02270 conserved hypothetic 99.3 6.8E-10 1.5E-14 95.7 22.0 210 31-293 87-296 (410)
54 KOG1060 Vesicle coat complex A 99.3 1.4E-08 3.1E-13 90.5 28.9 308 4-331 84-457 (968)
55 KOG1060 Vesicle coat complex A 99.3 1.4E-08 3E-13 90.6 26.8 309 13-336 54-425 (968)
56 KOG1061 Vesicle coat complex A 99.2 5.6E-09 1.2E-13 93.2 20.7 301 26-336 45-383 (734)
57 COG5240 SEC21 Vesicle coat com 99.2 9.3E-09 2E-13 88.7 19.8 277 3-292 276-554 (898)
58 KOG1061 Vesicle coat complex A 99.1 6.4E-09 1.4E-13 92.8 16.6 127 7-139 65-191 (734)
59 COG5096 Vesicle coat complex, 99.1 3.2E-07 6.9E-12 83.6 27.2 164 4-177 32-196 (757)
60 KOG1062 Vesicle coat complex A 99.1 1.1E-07 2.4E-12 85.3 23.5 276 11-297 124-418 (866)
61 KOG1248 Uncharacterized conser 99.1 1.7E-06 3.7E-11 81.1 31.0 294 5-300 587-905 (1176)
62 KOG1820 Microtubule-associated 99.0 3.7E-08 8.1E-13 91.0 19.4 189 144-336 250-447 (815)
63 KOG2137 Protein kinase [Signal 99.0 4.9E-08 1.1E-12 86.8 19.0 236 81-319 285-524 (700)
64 PF12755 Vac14_Fab1_bd: Vacuol 99.0 3.5E-09 7.7E-14 71.7 9.3 90 46-136 2-95 (97)
65 KOG1248 Uncharacterized conser 99.0 7.7E-06 1.7E-10 76.9 33.3 331 4-336 530-902 (1176)
66 KOG2032 Uncharacterized conser 98.9 2.5E-06 5.3E-11 72.9 25.0 258 68-332 257-531 (533)
67 KOG2137 Protein kinase [Signal 98.9 8.3E-08 1.8E-12 85.5 16.8 228 7-237 289-520 (700)
68 COG5096 Vesicle coat complex, 98.9 1.4E-06 3.1E-11 79.5 24.9 129 4-138 68-196 (757)
69 KOG1078 Vesicle coat complex C 98.9 4.3E-07 9.4E-12 81.4 20.5 287 29-331 244-531 (865)
70 KOG1059 Vesicle coat complex A 98.9 2.2E-06 4.8E-11 76.3 24.6 228 15-253 130-364 (877)
71 PF13646 HEAT_2: HEAT repeats; 98.9 8E-09 1.7E-13 69.9 7.6 86 32-133 1-88 (88)
72 KOG1059 Vesicle coat complex A 98.9 6.1E-06 1.3E-10 73.6 27.0 203 3-214 156-364 (877)
73 KOG1062 Vesicle coat complex A 98.9 1.8E-06 3.8E-11 77.8 23.3 102 229-336 317-418 (866)
74 PF12755 Vac14_Fab1_bd: Vacuol 98.9 3.3E-08 7.1E-13 67.0 9.8 82 242-323 3-88 (97)
75 PF12717 Cnd1: non-SMC mitotic 98.9 1.7E-07 3.8E-12 72.2 15.2 111 4-117 1-111 (178)
76 KOG1943 Beta-tubulin folding c 98.9 1.1E-05 2.3E-10 75.3 28.0 325 4-333 188-612 (1133)
77 PF13646 HEAT_2: HEAT repeats; 98.8 4.1E-08 8.9E-13 66.4 9.5 86 227-328 1-88 (88)
78 PF04826 Arm_2: Armadillo-like 98.8 1E-06 2.2E-11 71.2 18.2 191 30-220 12-210 (254)
79 PF12717 Cnd1: non-SMC mitotic 98.8 7.5E-07 1.6E-11 68.7 16.8 107 83-192 2-108 (178)
80 KOG0567 HEAT repeat-containing 98.8 6.7E-07 1.5E-11 70.2 16.3 75 5-95 50-126 (289)
81 KOG1820 Microtubule-associated 98.8 3.9E-07 8.5E-12 84.4 17.6 198 61-262 245-451 (815)
82 PF12460 MMS19_C: RNAPII trans 98.8 8.9E-05 1.9E-09 65.4 31.9 302 4-310 56-413 (415)
83 KOG1943 Beta-tubulin folding c 98.8 3.6E-05 7.8E-10 71.9 28.9 324 1-335 481-840 (1133)
84 PF04826 Arm_2: Armadillo-like 98.7 2.4E-06 5.3E-11 69.1 17.8 212 112-323 16-253 (254)
85 cd00020 ARM Armadillo/beta-cat 98.7 1.7E-07 3.7E-12 67.4 9.9 107 225-331 7-119 (120)
86 KOG1078 Vesicle coat complex C 98.7 3.4E-06 7.3E-11 75.8 19.1 273 4-292 258-531 (865)
87 KOG1058 Vesicle coat complex C 98.7 1.4E-05 3.1E-10 71.7 22.4 280 35-329 104-422 (948)
88 KOG4653 Uncharacterized conser 98.7 6.9E-06 1.5E-10 74.7 20.3 176 77-258 735-922 (982)
89 cd00020 ARM Armadillo/beta-cat 98.7 3.5E-07 7.5E-12 65.8 10.2 108 29-136 6-119 (120)
90 KOG0567 HEAT repeat-containing 98.6 7.7E-05 1.7E-09 59.0 23.0 93 226-334 188-282 (289)
91 PF05804 KAP: Kinesin-associat 98.6 9.2E-05 2E-09 68.4 27.0 300 28-333 288-650 (708)
92 KOG2032 Uncharacterized conser 98.6 9.4E-05 2E-09 63.6 23.8 255 30-293 258-531 (533)
93 KOG1077 Vesicle coat complex A 98.6 7.7E-05 1.7E-09 66.7 23.9 272 31-309 112-451 (938)
94 KOG1020 Sister chromatid cohes 98.6 0.00055 1.2E-08 66.5 31.1 131 3-135 828-958 (1692)
95 KOG1293 Proteins containing ar 98.6 0.00039 8.5E-09 61.9 27.6 330 2-331 64-532 (678)
96 KOG2025 Chromosome condensatio 98.5 0.00013 2.8E-09 65.4 24.3 226 84-329 61-291 (892)
97 PF12460 MMS19_C: RNAPII trans 98.5 0.00052 1.1E-08 60.6 30.9 320 8-333 19-395 (415)
98 PF05918 API5: Apoptosis inhib 98.5 0.00012 2.7E-09 65.1 24.1 261 31-299 24-303 (556)
99 KOG1058 Vesicle coat complex C 98.5 0.00022 4.8E-09 64.4 25.2 295 28-332 132-463 (948)
100 KOG1991 Nuclear transport rece 98.5 0.00095 2.1E-08 62.3 31.3 322 7-333 105-533 (1010)
101 KOG4413 26S proteasome regulat 98.5 0.00039 8.4E-09 56.9 25.0 318 11-332 63-439 (524)
102 PF05918 API5: Apoptosis inhib 98.5 2.9E-05 6.3E-10 69.0 18.9 258 3-273 34-315 (556)
103 PF05004 IFRD: Interferon-rela 98.5 9.8E-05 2.1E-09 62.0 21.2 205 111-315 46-285 (309)
104 KOG4413 26S proteasome regulat 98.5 0.0003 6.5E-09 57.5 22.8 280 50-332 63-377 (524)
105 KOG2062 26S proteasome regulat 98.5 2E-05 4.4E-10 70.6 17.3 261 31-318 414-680 (929)
106 KOG2025 Chromosome condensatio 98.5 3.7E-05 8.1E-10 68.7 18.8 169 29-212 84-256 (892)
107 PF13513 HEAT_EZ: HEAT-like re 98.4 6.4E-07 1.4E-11 54.3 5.6 53 239-291 1-55 (55)
108 KOG2956 CLIP-associating prote 98.4 0.0001 2.2E-09 62.9 20.0 182 113-298 292-482 (516)
109 PF05004 IFRD: Interferon-rela 98.4 0.00016 3.6E-09 60.7 20.9 183 153-335 49-260 (309)
110 KOG2062 26S proteasome regulat 98.4 4.6E-05 9.9E-10 68.5 17.0 225 81-332 426-653 (929)
111 KOG4653 Uncharacterized conser 98.3 0.0001 2.2E-09 67.4 19.0 184 31-220 728-923 (982)
112 PF13513 HEAT_EZ: HEAT-like re 98.3 1.4E-06 2.9E-11 52.9 5.2 53 278-330 1-55 (55)
113 KOG4535 HEAT and armadillo rep 98.3 0.00025 5.4E-09 60.9 20.1 329 5-334 10-464 (728)
114 KOG2956 CLIP-associating prote 98.3 0.00017 3.8E-09 61.6 18.8 186 31-220 288-482 (516)
115 KOG0168 Putative ubiquitin fus 98.3 0.00056 1.2E-08 62.7 22.8 165 12-176 186-364 (1051)
116 KOG1991 Nuclear transport rece 98.3 0.0034 7.5E-08 58.8 29.4 147 9-156 390-553 (1010)
117 PLN03076 ARF guanine nucleotid 98.3 0.002 4.4E-08 65.6 28.6 306 8-313 1109-1512(1780)
118 PF01347 Vitellogenin_N: Lipop 98.3 0.00022 4.7E-09 66.7 21.2 217 81-327 376-617 (618)
119 KOG1949 Uncharacterized conser 98.3 0.0011 2.4E-08 59.6 23.1 146 146-292 173-330 (1005)
120 PF12719 Cnd3: Nuclear condens 98.2 0.00026 5.6E-09 59.6 18.6 165 30-196 26-207 (298)
121 KOG1967 DNA repair/transcripti 98.2 9.9E-05 2.1E-09 68.0 16.4 147 145-291 865-1022(1030)
122 PF12719 Cnd3: Nuclear condens 98.2 0.00051 1.1E-08 57.8 19.9 228 73-331 31-284 (298)
123 KOG4535 HEAT and armadillo rep 98.2 0.00028 6E-09 60.6 17.9 290 7-296 271-606 (728)
124 PF08506 Cse1: Cse1; InterPro 98.2 0.00076 1.6E-08 58.1 21.0 126 199-327 224-370 (370)
125 KOG1020 Sister chromatid cohes 98.2 0.0049 1.1E-07 60.3 27.8 143 30-174 816-958 (1692)
126 PF13001 Ecm29: Proteasome sta 98.2 0.0015 3.2E-08 59.1 23.6 168 160-330 296-486 (501)
127 PF14500 MMS19_N: Dos2-interac 98.2 0.0016 3.5E-08 53.3 21.6 232 74-310 4-254 (262)
128 PF02985 HEAT: HEAT repeat; I 98.2 2.9E-06 6.3E-11 44.4 3.7 29 265-293 1-29 (31)
129 smart00638 LPD_N Lipoprotein N 98.2 0.00066 1.4E-08 62.8 21.0 218 83-327 340-573 (574)
130 KOG1949 Uncharacterized conser 98.1 0.00055 1.2E-08 61.5 18.9 143 71-213 176-329 (1005)
131 PF02985 HEAT: HEAT repeat; I 98.1 4.9E-06 1.1E-10 43.5 3.8 30 31-60 1-30 (31)
132 PF14500 MMS19_N: Dos2-interac 98.1 0.0024 5.3E-08 52.2 21.2 226 35-265 4-248 (262)
133 KOG1525 Sister chromatid cohes 98.1 0.0026 5.5E-08 62.5 24.5 324 2-333 61-406 (1266)
134 KOG1517 Guanine nucleotide bin 98.1 0.00042 9.1E-09 64.9 18.0 210 85-294 486-733 (1387)
135 PF05804 KAP: Kinesin-associat 98.1 0.0042 9.1E-08 57.8 24.2 294 32-331 252-563 (708)
136 KOG1293 Proteins containing ar 98.1 0.0028 6.1E-08 56.7 21.8 290 4-293 194-533 (678)
137 COG5218 YCG1 Chromosome conden 98.1 0.0068 1.5E-07 53.8 23.5 172 105-290 88-263 (885)
138 KOG1077 Vesicle coat complex A 98.0 0.0093 2E-07 54.0 28.6 322 2-330 159-585 (938)
139 KOG0414 Chromosome condensatio 97.9 0.00031 6.7E-09 66.6 13.5 149 179-333 912-1065(1251)
140 KOG1822 Uncharacterized conser 97.9 0.0063 1.4E-07 60.9 22.6 285 9-294 802-1128(2067)
141 KOG2933 Uncharacterized conser 97.9 0.00071 1.5E-08 55.0 13.6 176 30-209 88-271 (334)
142 KOG0414 Chromosome condensatio 97.9 0.00059 1.3E-08 64.8 14.5 177 12-198 898-1083(1251)
143 KOG1822 Uncharacterized conser 97.8 0.015 3.3E-07 58.4 24.0 284 45-328 799-1123(2067)
144 KOG2274 Predicted importin 9 [ 97.8 0.029 6.2E-07 52.4 26.0 138 2-140 101-262 (1005)
145 KOG1967 DNA repair/transcripti 97.8 0.00026 5.7E-09 65.3 11.3 149 183-331 864-1023(1030)
146 KOG0168 Putative ubiquitin fus 97.8 0.0033 7.2E-08 57.9 17.6 184 35-218 172-367 (1051)
147 COG5116 RPN2 26S proteasome re 97.8 0.0012 2.7E-08 58.0 14.3 153 150-316 519-675 (926)
148 COG5218 YCG1 Chromosome conden 97.8 0.0086 1.9E-07 53.2 19.4 139 143-293 87-229 (885)
149 KOG1992 Nuclear export recepto 97.8 0.032 7E-07 51.6 24.9 325 5-332 102-527 (960)
150 KOG1517 Guanine nucleotide bin 97.7 0.0038 8.3E-08 58.9 17.5 188 30-217 512-734 (1387)
151 COG5116 RPN2 26S proteasome re 97.7 0.0012 2.5E-08 58.2 13.4 132 188-333 518-651 (926)
152 KOG0392 SNF2 family DNA-depend 97.7 0.0012 2.6E-08 63.1 14.3 216 1-217 87-327 (1549)
153 PF01347 Vitellogenin_N: Lipop 97.7 0.0049 1.1E-07 57.8 18.6 199 108-329 363-586 (618)
154 KOG0413 Uncharacterized conser 97.7 0.0069 1.5E-07 56.8 17.8 140 4-150 944-1086(1529)
155 KOG2933 Uncharacterized conser 97.6 0.0047 1E-07 50.4 14.8 138 155-296 96-237 (334)
156 PF13251 DUF4042: Domain of un 97.6 0.0016 3.4E-08 49.8 10.9 153 6-177 1-175 (182)
157 KOG0392 SNF2 family DNA-depend 97.6 0.0025 5.4E-08 61.2 13.9 222 71-294 79-326 (1549)
158 KOG1992 Nuclear export recepto 97.5 0.079 1.7E-06 49.2 28.9 247 70-321 499-782 (960)
159 smart00638 LPD_N Lipoprotein N 97.5 0.012 2.7E-07 54.5 18.0 136 186-329 393-542 (574)
160 KOG0413 Uncharacterized conser 97.4 0.083 1.8E-06 50.0 21.6 182 109-291 473-683 (1529)
161 PLN03076 ARF guanine nucleotid 97.4 0.18 3.9E-06 52.2 25.2 257 2-258 1148-1493(1780)
162 KOG2011 Sister chromatid cohes 97.4 0.093 2E-06 50.6 21.4 241 6-251 170-432 (1048)
163 PF10363 DUF2435: Protein of u 97.3 0.0015 3.3E-08 43.8 7.3 83 32-119 5-88 (92)
164 COG5098 Chromosome condensatio 97.3 0.14 3.1E-06 46.8 23.7 107 32-138 301-416 (1128)
165 COG5098 Chromosome condensatio 97.3 0.0085 1.8E-07 54.3 12.9 149 179-333 885-1038(1128)
166 PF08506 Cse1: Cse1; InterPro 97.2 0.088 1.9E-06 45.6 18.8 125 161-288 225-370 (370)
167 PF10274 ParcG: Parkin co-regu 97.2 0.0075 1.6E-07 45.8 10.7 119 26-144 34-171 (183)
168 PF10274 ParcG: Parkin co-regu 97.2 0.019 4.1E-07 43.7 12.8 115 184-298 36-169 (183)
169 KOG2160 Armadillo/beta-catenin 97.2 0.064 1.4E-06 45.0 16.9 176 158-333 94-283 (342)
170 PF13001 Ecm29: Proteasome sta 97.1 0.038 8.2E-07 50.1 16.4 222 30-254 237-488 (501)
171 KOG2021 Nuclear mRNA export fa 97.1 0.21 4.5E-06 46.2 27.9 304 31-336 336-768 (980)
172 PF11865 DUF3385: Domain of un 97.1 0.011 2.4E-07 44.5 10.7 70 146-215 85-157 (160)
173 PF13251 DUF4042: Domain of un 97.1 0.014 3.1E-07 44.7 11.1 128 190-334 44-176 (182)
174 PF12054 DUF3535: Domain of un 97.1 0.067 1.5E-06 47.5 16.9 227 2-235 98-364 (441)
175 PF11865 DUF3385: Domain of un 97.1 0.0069 1.5E-07 45.6 9.4 148 182-334 6-159 (160)
176 PF10363 DUF2435: Protein of u 97.1 0.016 3.4E-07 39.0 9.9 81 152-237 8-89 (92)
177 PF12530 DUF3730: Protein of u 97.1 0.12 2.6E-06 41.8 21.7 197 74-278 6-217 (234)
178 PF04118 Dopey_N: Dopey, N-ter 97.0 0.15 3.3E-06 42.7 21.8 180 109-293 55-254 (307)
179 KOG2973 Uncharacterized conser 97.0 0.16 3.5E-06 41.7 18.9 63 270-332 245-315 (353)
180 KOG2274 Predicted importin 9 [ 97.0 0.36 7.8E-06 45.6 28.6 212 41-254 461-689 (1005)
181 KOG2011 Sister chromatid cohes 96.9 0.42 9E-06 46.4 21.1 129 157-290 297-432 (1048)
182 cd08050 TAF6 TATA Binding Prot 96.9 0.037 8.1E-07 47.4 13.3 137 110-253 180-339 (343)
183 cd08050 TAF6 TATA Binding Prot 96.9 0.03 6.5E-07 48.0 12.5 133 192-331 184-339 (343)
184 PF12530 DUF3730: Protein of u 96.9 0.18 4E-06 40.7 19.9 199 111-317 3-217 (234)
185 PF08389 Xpo1: Exportin 1-like 96.8 0.032 6.8E-07 41.5 11.2 142 5-171 2-148 (148)
186 PF12074 DUF3554: Domain of un 96.8 0.12 2.6E-06 44.5 15.9 49 225-274 204-254 (339)
187 PF11864 DUF3384: Domain of un 96.8 0.4 8.6E-06 43.3 24.7 143 187-331 177-329 (464)
188 KOG4524 Uncharacterized conser 96.7 0.65 1.4E-05 44.3 21.0 94 223-316 801-902 (1014)
189 COG5656 SXM1 Importin, protein 96.6 0.58 1.3E-05 43.4 27.7 311 25-336 403-761 (970)
190 KOG2973 Uncharacterized conser 96.6 0.32 6.9E-06 40.1 18.0 255 32-293 5-315 (353)
191 PF12074 DUF3554: Domain of un 96.6 0.41 8.8E-06 41.3 18.9 218 86-312 4-253 (339)
192 KOG2160 Armadillo/beta-catenin 96.6 0.38 8.2E-06 40.5 19.7 177 41-217 94-284 (342)
193 KOG2081 Nuclear transport regu 96.6 0.53 1.1E-05 42.1 20.5 196 39-238 256-481 (559)
194 KOG1993 Nuclear transport rece 96.5 0.71 1.5E-05 43.2 24.2 276 12-293 465-765 (978)
195 PF08161 NUC173: NUC173 domain 96.5 0.15 3.3E-06 39.8 13.1 167 160-330 13-197 (198)
196 KOG0946 ER-Golgi vesicle-tethe 96.5 0.4 8.6E-06 44.7 17.2 170 106-296 20-198 (970)
197 KOG1525 Sister chromatid cohes 96.4 1.2 2.7E-05 44.7 28.5 278 8-294 19-330 (1266)
198 KOG2549 Transcription initiati 96.4 0.25 5.5E-06 43.9 14.8 139 109-254 208-370 (576)
199 PF10521 DUF2454: Protein of u 96.3 0.12 2.6E-06 43.2 12.3 134 65-198 115-277 (282)
200 KOG2081 Nuclear transport regu 96.3 0.76 1.6E-05 41.1 18.9 208 4-217 260-497 (559)
201 PF07571 DUF1546: Protein of u 96.2 0.025 5.4E-07 38.1 6.3 70 2-75 17-90 (92)
202 KOG2549 Transcription initiati 96.2 0.41 8.8E-06 42.7 14.9 132 194-332 215-370 (576)
203 PF14868 DUF4487: Domain of un 96.1 1.1 2.3E-05 41.1 24.1 269 10-295 247-554 (559)
204 PF05536 Neurochondrin: Neuroc 96.1 1.1 2.4E-05 41.2 25.0 186 33-222 53-268 (543)
205 KOG0891 DNA-dependent protein 96.1 0.42 9.1E-06 50.7 16.8 250 35-292 486-762 (2341)
206 PF03224 V-ATPase_H_N: V-ATPas 95.9 0.95 2.1E-05 38.5 20.9 171 150-320 108-302 (312)
207 PF03378 CAS_CSE1: CAS/CSE pro 95.8 1.2 2.7E-05 39.6 19.5 217 80-298 41-277 (435)
208 PF03378 CAS_CSE1: CAS/CSE pro 95.8 1.3 2.7E-05 39.5 18.3 224 31-259 27-277 (435)
209 KOG1993 Nuclear transport rece 95.8 1.8 3.8E-05 40.7 26.3 152 3-155 499-664 (978)
210 PF01603 B56: Protein phosphat 95.8 1.3 2.8E-05 39.2 24.7 254 78-333 99-371 (409)
211 KOG2213 Apoptosis inhibitor 5/ 95.7 1.1 2.4E-05 38.3 20.9 53 6-60 39-91 (460)
212 PF01603 B56: Protein phosphat 95.7 1.4 2.9E-05 39.1 21.5 207 2-210 101-321 (409)
213 KOG0803 Predicted E3 ubiquitin 95.7 2.5 5.5E-05 42.7 19.5 204 110-316 43-289 (1312)
214 PF08167 RIX1: rRNA processing 95.7 0.63 1.4E-05 35.3 12.7 75 66-140 22-100 (165)
215 PF08389 Xpo1: Exportin 1-like 95.6 0.38 8.3E-06 35.6 11.4 48 239-288 100-148 (148)
216 KOG2149 Uncharacterized conser 95.6 0.8 1.7E-05 39.3 14.0 111 111-222 61-177 (393)
217 KOG2149 Uncharacterized conser 95.6 0.46 1E-05 40.7 12.4 108 191-298 63-175 (393)
218 PF07571 DUF1546: Protein of u 95.5 0.099 2.1E-06 35.2 6.9 56 197-252 17-76 (92)
219 PF08167 RIX1: rRNA processing 95.5 0.72 1.6E-05 35.0 12.4 112 184-297 23-147 (165)
220 PF12054 DUF3535: Domain of un 95.5 1.8 3.8E-05 38.8 17.6 75 122-196 101-178 (441)
221 PF14664 RICTOR_N: Rapamycin-i 95.5 1.6 3.4E-05 38.1 20.1 215 77-292 34-268 (371)
222 PF11701 UNC45-central: Myosin 95.4 0.32 6.8E-06 36.6 10.2 131 197-328 16-155 (157)
223 PF10521 DUF2454: Protein of u 95.4 1.3 2.8E-05 37.0 19.4 135 182-316 115-278 (282)
224 PF08713 DNA_alkylation: DNA a 95.4 1 2.3E-05 35.7 16.1 134 148-296 52-187 (213)
225 PF08713 DNA_alkylation: DNA a 95.4 1.1 2.3E-05 35.7 15.6 31 186-216 155-185 (213)
226 KOG4524 Uncharacterized conser 95.2 3.1 6.7E-05 40.1 19.9 93 185-277 802-902 (1014)
227 PF03224 V-ATPase_H_N: V-ATPas 95.2 1.8 3.8E-05 36.9 16.6 147 109-257 106-272 (312)
228 KOG2005 26S proteasome regulat 95.1 2.8 6E-05 38.7 21.5 266 30-316 452-727 (878)
229 KOG0889 Histone acetyltransfer 95.0 7.3 0.00016 43.2 22.5 279 30-311 984-1327(3550)
230 PF11698 V-ATPase_H_C: V-ATPas 95.0 0.084 1.8E-06 37.1 5.4 68 70-137 44-115 (119)
231 KOG1851 Uncharacterized conser 94.9 2 4.4E-05 43.5 16.0 150 67-217 1524-1680(1710)
232 PF12231 Rif1_N: Rap1-interact 94.9 2.4 5.2E-05 37.1 25.4 208 82-295 59-305 (372)
233 KOG0803 Predicted E3 ubiquitin 94.9 5.1 0.00011 40.7 18.9 241 35-296 46-307 (1312)
234 COG5095 TAF6 Transcription ini 94.8 1.4 3E-05 36.3 12.4 131 194-331 206-358 (450)
235 PF12830 Nipped-B_C: Sister ch 94.7 0.23 5E-06 38.6 7.9 73 222-297 5-78 (187)
236 COG5101 CRM1 Importin beta-rel 94.7 3.5 7.5E-05 37.9 21.1 158 60-217 472-650 (1053)
237 smart00567 EZ_HEAT E-Z type HE 94.7 0.044 9.6E-07 28.0 2.7 30 5-42 1-30 (30)
238 PF12765 Cohesin_HEAT: HEAT re 94.7 0.042 9E-07 30.8 2.7 25 29-53 17-41 (42)
239 PF14664 RICTOR_N: Rapamycin-i 94.6 2.8 6.1E-05 36.5 25.5 229 25-253 20-268 (371)
240 cd03568 VHS_STAM VHS domain fa 94.6 0.85 1.8E-05 33.7 10.2 74 224-297 36-114 (144)
241 PF12765 Cohesin_HEAT: HEAT re 94.5 0.045 9.8E-07 30.6 2.6 24 107-130 17-40 (42)
242 COG5110 RPN1 26S proteasome re 94.5 3.5 7.7E-05 37.1 24.5 250 29-295 449-707 (881)
243 PF05536 Neurochondrin: Neuroc 94.5 4 8.6E-05 37.7 23.9 229 30-259 5-266 (543)
244 PF08064 UME: UME (NUC010) dom 94.4 0.77 1.7E-05 31.9 9.2 73 226-300 12-90 (107)
245 COG5095 TAF6 Transcription ini 94.4 1.5 3.3E-05 36.1 11.8 138 70-214 199-358 (450)
246 PF12830 Nipped-B_C: Sister ch 94.4 1.9 4.1E-05 33.5 14.0 70 30-101 8-77 (187)
247 KOG1851 Uncharacterized conser 94.3 4.9 0.00011 40.9 17.1 151 146-297 1525-1682(1710)
248 KOG0946 ER-Golgi vesicle-tethe 94.3 4.9 0.00011 37.9 24.2 70 29-98 21-92 (970)
249 PF08161 NUC173: NUC173 domain 94.3 2.1 4.5E-05 33.6 13.6 28 263-291 170-197 (198)
250 PF11698 V-ATPase_H_C: V-ATPas 94.2 0.21 4.6E-06 35.1 5.9 68 30-97 43-114 (119)
251 PF11701 UNC45-central: Myosin 94.1 0.75 1.6E-05 34.6 9.3 115 41-156 16-137 (157)
252 PF12231 Rif1_N: Rap1-interact 94.1 3.7 8.1E-05 35.9 27.0 211 43-258 59-307 (372)
253 PF00514 Arm: Armadillo/beta-c 94.1 0.1 2.2E-06 29.0 3.5 27 265-291 13-39 (41)
254 PF00514 Arm: Armadillo/beta-c 93.9 0.22 4.8E-06 27.6 4.7 29 108-136 12-40 (41)
255 PF08569 Mo25: Mo25-like; Int 93.7 4.1 8.9E-05 34.9 22.3 211 103-315 71-313 (335)
256 KOG2022 Nuclear transport rece 93.6 7.1 0.00015 37.4 24.8 172 45-221 439-625 (982)
257 cd03561 VHS VHS domain family; 93.4 1.5 3.2E-05 32.0 9.5 72 30-101 37-115 (133)
258 COG5537 IRR1 Cohesin [Cell div 93.4 4.8 0.0001 36.7 14.0 138 36-177 281-423 (740)
259 KOG1848 Uncharacterized conser 93.4 9.9 0.00022 38.4 21.0 216 77-293 850-1132(1610)
260 COG5656 SXM1 Importin, protein 93.4 7.1 0.00015 36.7 29.1 115 219-333 402-529 (970)
261 cd03569 VHS_Hrs_Vps27p VHS dom 93.2 2.6 5.6E-05 31.1 10.7 87 225-311 41-132 (142)
262 KOG2213 Apoptosis inhibitor 5/ 93.0 5.4 0.00012 34.4 21.9 206 83-295 38-272 (460)
263 PF08623 TIP120: TATA-binding 93.0 0.35 7.6E-06 36.5 5.8 76 41-117 38-115 (169)
264 cd03567 VHS_GGA VHS domain fam 92.9 2.6 5.7E-05 30.9 10.1 70 266-335 40-119 (139)
265 KOG2005 26S proteasome regulat 92.9 2.7 5.9E-05 38.7 12.0 280 31-331 416-703 (878)
266 cd03568 VHS_STAM VHS domain fa 92.9 2.9 6.2E-05 30.9 12.5 97 78-180 13-114 (144)
267 cd03569 VHS_Hrs_Vps27p VHS dom 92.8 3 6.4E-05 30.8 10.6 68 73-140 45-117 (142)
268 cd03561 VHS VHS domain family; 92.8 2.6 5.6E-05 30.7 10.0 73 264-336 37-116 (133)
269 KOG4500 Rho/Rac GTPase guanine 92.6 6.8 0.00015 34.4 22.3 290 41-330 53-388 (604)
270 PF08569 Mo25: Mo25-like; Int 92.4 6.5 0.00014 33.7 15.6 185 30-216 76-284 (335)
271 PF04118 Dopey_N: Dopey, N-ter 92.0 6.8 0.00015 33.1 19.7 138 186-329 54-198 (307)
272 PF08623 TIP120: TATA-binding 91.9 0.59 1.3E-05 35.3 5.8 62 2-64 38-99 (169)
273 COG5110 RPN1 26S proteasome re 91.7 8.2 0.00018 35.0 13.1 280 31-330 414-703 (881)
274 smart00288 VHS Domain present 91.3 2.9 6.3E-05 30.4 8.8 71 265-335 38-114 (133)
275 PF12397 U3snoRNP10: U3 small 91.3 4 8.7E-05 29.0 11.8 35 183-217 3-38 (121)
276 KOG1848 Uncharacterized conser 91.0 20 0.00043 36.5 24.5 215 116-331 850-1131(1610)
277 KOG0891 DNA-dependent protein 90.9 13 0.00028 40.5 15.8 217 112-332 485-719 (2341)
278 smart00567 EZ_HEAT E-Z type HE 90.9 0.54 1.2E-05 23.8 3.5 29 83-119 1-29 (30)
279 cd00197 VHS_ENTH_ANTH VHS, ENT 90.8 4.3 9.3E-05 28.6 9.8 37 224-260 36-72 (115)
280 COG5234 CIN1 Beta-tubulin fold 90.7 3.3 7.1E-05 38.5 10.1 174 40-214 206-415 (993)
281 KOG3678 SARM protein (with ste 90.7 5.5 0.00012 35.2 11.0 147 187-333 181-337 (832)
282 PF12397 U3snoRNP10: U3 small 90.5 4.8 0.0001 28.6 11.1 71 145-217 4-76 (121)
283 KOG0889 Histone acetyltransfer 90.4 35 0.00077 38.5 23.0 151 185-336 983-1159(3550)
284 PF11935 DUF3453: Domain of un 90.4 8.5 0.00018 31.3 13.8 119 195-315 2-165 (239)
285 PF07539 DRIM: Down-regulated 90.2 1.9 4.2E-05 31.6 7.1 81 29-117 16-97 (141)
286 COG5537 IRR1 Cohesin [Cell div 90.1 15 0.00033 33.7 16.1 104 188-292 277-385 (740)
287 KOG1048 Neural adherens juncti 90.0 17 0.00038 34.3 21.1 302 30-332 233-641 (717)
288 cd06561 AlkD_like A new struct 89.7 8.3 0.00018 30.1 15.6 102 196-311 82-183 (197)
289 KOG2022 Nuclear transport rece 89.4 21 0.00046 34.4 30.0 143 4-150 480-632 (982)
290 KOG2153 Protein involved in th 89.4 18 0.00038 33.5 22.9 126 13-138 192-354 (704)
291 smart00802 UME Domain in UVSB 89.4 5.5 0.00012 27.7 9.4 72 226-299 12-89 (107)
292 KOG1222 Kinesin associated pro 89.3 16 0.00034 32.7 26.0 110 224-333 546-664 (791)
293 PF03130 HEAT_PBS: PBS lyase H 89.2 0.64 1.4E-05 23.0 2.7 14 85-98 1-14 (27)
294 PF08064 UME: UME (NUC010) dom 88.8 6.2 0.00013 27.4 10.0 60 120-182 27-89 (107)
295 KOG4500 Rho/Rac GTPase guanine 88.5 17 0.00037 32.1 22.6 68 225-292 315-389 (604)
296 PF00790 VHS: VHS domain; Int 88.4 8.1 0.00018 28.4 13.4 96 78-179 18-121 (140)
297 cd06561 AlkD_like A new struct 88.4 10 0.00022 29.5 15.8 32 185-216 140-171 (197)
298 PF08767 CRM1_C: CRM1 C termin 88.0 16 0.00034 31.2 23.9 136 84-219 42-198 (319)
299 PF00790 VHS: VHS domain; Int 87.9 8.8 0.00019 28.2 12.8 72 146-217 41-120 (140)
300 PF11864 DUF3384: Domain of un 87.8 21 0.00046 32.4 30.6 285 3-297 2-335 (464)
301 smart00185 ARM Armadillo/beta- 87.7 0.82 1.8E-05 24.9 2.9 27 304-330 13-39 (41)
302 PF09324 DUF1981: Domain of un 87.0 3.1 6.8E-05 27.5 5.8 21 81-101 30-50 (86)
303 KOG2122 Beta-catenin-binding p 86.8 42 0.00092 34.8 17.8 68 264-331 530-600 (2195)
304 COG5369 Uncharacterized conser 86.8 3.9 8.5E-05 36.8 7.7 107 225-331 431-544 (743)
305 KOG2199 Signal transducing ada 86.6 6.4 0.00014 33.9 8.5 74 225-298 45-123 (462)
306 KOG2021 Nuclear mRNA export fa 86.5 31 0.00066 32.9 28.9 286 43-335 206-567 (980)
307 smart00185 ARM Armadillo/beta- 86.4 1.3 2.9E-05 24.0 3.3 28 265-292 13-40 (41)
308 cd00256 VATPase_H VATPase_H, r 86.2 24 0.00052 31.4 25.0 302 29-331 52-424 (429)
309 PF14668 RICTOR_V: Rapamycin-i 85.9 6.1 0.00013 25.2 6.3 55 242-296 4-61 (73)
310 KOG2759 Vacuolar H+-ATPase V1 85.5 24 0.00053 30.9 23.6 70 264-333 366-439 (442)
311 PF09324 DUF1981: Domain of un 85.4 7.1 0.00015 25.8 6.9 67 262-328 15-84 (86)
312 cd03572 ENTH_epsin_related ENT 84.6 12 0.00026 26.6 9.1 30 186-215 38-67 (122)
313 cd00197 VHS_ENTH_ANTH VHS, ENT 83.9 12 0.00027 26.2 9.8 37 146-182 36-72 (115)
314 KOG2229 Protein required for a 83.7 33 0.00072 31.0 23.2 90 30-123 20-115 (616)
315 cd03567 VHS_GGA VHS domain fam 83.6 15 0.00033 26.9 13.4 98 77-180 13-120 (139)
316 smart00288 VHS Domain present 83.6 15 0.00032 26.7 12.1 96 78-179 13-114 (133)
317 KOG1087 Cytosolic sorting prot 83.2 26 0.00057 31.6 11.2 98 77-180 13-116 (470)
318 KOG2038 CAATT-binding transcri 82.8 45 0.00098 31.9 20.3 69 67-137 302-370 (988)
319 KOG1837 Uncharacterized conser 82.8 65 0.0014 33.6 24.3 92 243-336 1522-1615(1621)
320 KOG2038 CAATT-binding transcri 82.5 47 0.001 31.8 15.4 109 183-295 301-411 (988)
321 cd03572 ENTH_epsin_related ENT 82.5 15 0.00033 26.2 10.3 33 225-257 38-70 (122)
322 cd07064 AlkD_like_1 A new stru 82.2 23 0.0005 28.1 16.1 26 33-58 49-74 (208)
323 PF12612 TFCD_C: Tubulin foldi 81.7 17 0.00037 28.4 8.8 28 187-214 8-35 (193)
324 COG5369 Uncharacterized conser 81.7 5 0.00011 36.2 6.2 107 186-292 431-544 (743)
325 COG5234 CIN1 Beta-tubulin fold 81.6 49 0.0011 31.3 18.4 68 259-331 686-757 (993)
326 cd03565 VHS_Tom1 VHS domain fa 81.5 19 0.00041 26.5 10.8 60 276-335 51-118 (141)
327 PF07539 DRIM: Down-regulated 81.1 18 0.00039 26.6 8.1 48 107-159 16-63 (141)
328 cd03565 VHS_Tom1 VHS domain fa 81.0 20 0.00042 26.4 10.9 97 157-259 15-120 (141)
329 KOG3961 Uncharacterized conser 80.4 9 0.0002 30.1 6.5 88 184-271 112-206 (262)
330 COG4912 Predicted DNA alkylati 79.2 15 0.00032 29.1 7.4 30 69-98 154-183 (222)
331 PF14868 DUF4487: Domain of un 78.6 57 0.0012 30.3 24.3 86 249-335 465-555 (559)
332 PF14225 MOR2-PAG1_C: Cell mor 76.0 43 0.00094 27.7 18.9 121 186-314 111-239 (262)
333 PF11935 DUF3453: Domain of un 76.0 41 0.00089 27.3 17.9 118 39-158 2-164 (239)
334 KOG1932 TATA binding protein a 75.9 92 0.002 31.3 14.0 49 239-290 882-930 (1180)
335 KOG2759 Vacuolar H+-ATPase V1 75.2 58 0.0013 28.7 17.3 57 4-60 127-187 (442)
336 PF12612 TFCD_C: Tubulin foldi 74.8 38 0.00083 26.4 10.1 142 107-252 6-156 (193)
337 PF14668 RICTOR_V: Rapamycin-i 74.2 14 0.0003 23.6 5.1 54 203-256 4-60 (73)
338 cd00256 VATPase_H VATPase_H, r 74.1 66 0.0014 28.8 20.8 168 155-322 109-298 (429)
339 smart00802 UME Domain in UVSB 74.0 27 0.00058 24.3 9.7 58 123-182 30-89 (107)
340 KOG1087 Cytosolic sorting prot 73.5 47 0.001 30.0 9.9 73 264-336 38-116 (470)
341 KOG1837 Uncharacterized conser 71.6 1.4E+02 0.003 31.4 22.4 72 226-297 1542-1615(1621)
342 COG5101 CRM1 Importin beta-rel 71.5 91 0.002 29.3 24.4 72 31-102 571-652 (1053)
343 KOG2199 Signal transducing ada 70.9 72 0.0016 27.9 11.7 99 77-181 20-123 (462)
344 PF08767 CRM1_C: CRM1 C termin 70.8 67 0.0015 27.5 25.6 137 44-180 41-198 (319)
345 KOG4646 Uncharacterized conser 69.2 42 0.00091 24.5 10.3 135 194-330 25-168 (173)
346 KOG1048 Neural adherens juncti 67.8 1.2E+02 0.0025 29.1 20.8 146 185-330 517-682 (717)
347 KOG1789 Endocytosis protein RM 66.9 1.5E+02 0.0033 30.1 21.6 116 4-120 1785-1910(2235)
348 cd07064 AlkD_like_1 A new stru 66.6 63 0.0014 25.6 19.1 158 77-254 20-179 (208)
349 KOG4199 Uncharacterized conser 64.4 93 0.002 26.8 23.4 291 38-331 115-443 (461)
350 KOG3036 Protein involved in ce 62.0 87 0.0019 25.6 10.4 69 29-97 123-196 (293)
351 KOG3961 Uncharacterized conser 61.3 12 0.00026 29.5 3.4 68 30-97 114-183 (262)
352 COG5330 Uncharacterized protei 60.3 62 0.0013 28.0 7.7 61 231-291 13-74 (364)
353 cd00872 PI3Ka_I Phosphoinositi 60.0 50 0.0011 25.3 6.6 15 83-97 85-99 (171)
354 KOG2153 Protein involved in th 59.8 1.6E+02 0.0034 27.8 22.5 52 127-178 304-355 (704)
355 KOG1877 Putative transmembrane 59.4 1.8E+02 0.0039 28.4 14.6 89 49-137 75-174 (819)
356 PF14663 RasGEF_N_2: Rapamycin 58.9 39 0.00085 23.8 5.5 29 225-253 8-36 (115)
357 KOG4646 Uncharacterized conser 57.3 74 0.0016 23.3 7.5 68 30-97 58-127 (173)
358 cd03562 CID CID (CTD-Interacti 56.4 66 0.0014 22.4 8.6 69 223-291 35-106 (114)
359 COG5330 Uncharacterized protei 55.9 67 0.0015 27.8 7.2 66 265-330 8-74 (364)
360 PF00613 PI3Ka: Phosphoinositi 55.8 56 0.0012 25.3 6.4 77 30-118 45-121 (184)
361 PF12333 Ipi1_N: Rix1 complex 54.9 52 0.0011 22.6 5.5 53 260-312 7-62 (102)
362 cd00864 PI3Ka Phosphoinositide 54.6 88 0.0019 23.4 7.5 15 83-97 85-99 (152)
363 PF06371 Drf_GBD: Diaphanous G 54.5 96 0.0021 23.8 9.0 27 148-174 159-185 (187)
364 PF12333 Ipi1_N: Rix1 complex 53.2 72 0.0016 21.9 6.8 54 183-236 8-64 (102)
365 COG5231 VMA13 Vacuolar H+-ATPa 50.8 1.6E+02 0.0035 25.2 14.9 66 187-252 357-426 (432)
366 PF14631 FancD2: Fanconi anaem 50.3 3.5E+02 0.0075 28.9 14.0 135 185-321 434-572 (1426)
367 PF09759 Atx10homo_assoc: Spin 50.3 64 0.0014 22.2 5.2 58 7-64 2-64 (102)
368 PF11841 DUF3361: Domain of un 49.4 1.1E+02 0.0024 23.0 11.6 97 201-298 32-136 (160)
369 PF06371 Drf_GBD: Diaphanous G 49.3 1.2E+02 0.0026 23.3 8.7 54 239-292 130-186 (187)
370 PF04078 Rcd1: Cell differenti 49.1 1.5E+02 0.0033 24.4 16.4 68 147-214 95-167 (262)
371 PF14225 MOR2-PAG1_C: Cell mor 48.1 1.6E+02 0.0035 24.4 21.3 129 108-241 111-244 (262)
372 PF13764 E3_UbLigase_R4: E3 ub 47.4 2.9E+02 0.0064 27.3 11.6 183 126-310 120-317 (802)
373 KOG0904 Phosphatidylinositol 3 47.0 1.3E+02 0.0028 29.6 8.1 87 4-94 566-674 (1076)
374 PF08158 NUC130_3NT: NUC130/3N 46.9 40 0.00087 19.9 3.3 31 300-330 16-46 (52)
375 KOG1988 Uncharacterized conser 46.6 3E+02 0.0065 27.1 18.1 117 25-141 19-135 (970)
376 PF12783 Sec7_N: Guanine nucle 45.7 1.3E+02 0.0028 22.7 12.4 70 185-254 72-146 (168)
377 PF14222 MOR2-PAG1_N: Cell mor 43.9 2.8E+02 0.006 26.0 22.9 42 255-296 462-503 (552)
378 PF14663 RasGEF_N_2: Rapamycin 43.3 76 0.0016 22.4 5.0 30 31-60 9-38 (115)
379 KOG3036 Protein involved in ce 43.2 1.9E+02 0.004 23.8 12.1 54 159-212 137-194 (293)
380 KOG1222 Kinesin associated pro 43.0 2.6E+02 0.0057 25.5 24.3 94 27-120 301-398 (791)
381 KOG1988 Uncharacterized conser 42.9 3.4E+02 0.0074 26.8 17.3 174 72-253 27-205 (970)
382 COG4912 Predicted DNA alkylati 42.7 1.8E+02 0.0038 23.3 10.0 88 198-296 98-186 (222)
383 COG2733 Predicted membrane pro 42.5 2.4E+02 0.0052 24.9 23.9 29 267-295 304-332 (415)
384 COG5221 DOP1 Dopey and related 42.1 3.7E+02 0.0081 27.4 10.4 165 123-292 78-256 (1618)
385 PF09268 Clathrin-link: Clathr 41.7 30 0.00064 16.6 1.8 19 225-243 3-21 (24)
386 KOG2374 Uncharacterized conser 41.1 2.8E+02 0.0061 25.3 11.8 108 187-298 8-130 (661)
387 KOG4634 Mitochondrial F1F0-ATP 40.8 1.1E+02 0.0024 20.6 5.1 59 278-336 10-78 (105)
388 PF11919 DUF3437: Domain of un 40.3 1.1E+02 0.0024 20.4 5.6 57 240-297 4-62 (90)
389 PF04510 DUF577: Family of unk 40.1 1.7E+02 0.0037 22.4 8.2 31 108-140 3-33 (174)
390 PF11841 DUF3361: Domain of un 39.6 1.7E+02 0.0036 22.2 9.8 73 261-335 59-134 (160)
391 KOG2753 Uncharacterized conser 39.1 2.5E+02 0.0055 24.1 15.6 14 202-215 122-135 (378)
392 KOG1823 DRIM (Down-regulated i 38.9 4.9E+02 0.011 27.4 20.0 164 107-275 1001-1180(1364)
393 PF11707 Npa1: Ribosome 60S bi 37.8 2.7E+02 0.0058 24.0 13.2 31 32-62 58-88 (330)
394 KOG1926 Predicted regulator of 35.9 5E+02 0.011 26.6 17.6 163 31-197 75-253 (1129)
395 PF11919 DUF3437: Domain of un 35.7 1.3E+02 0.0028 20.2 4.8 51 281-332 6-58 (90)
396 PF01465 GRIP: GRIP domain; I 34.9 90 0.0019 17.7 4.0 33 106-138 5-37 (46)
397 PF08664 YcbB: YcbB domain; I 34.5 1.6E+02 0.0034 21.5 5.4 14 6-19 70-83 (134)
398 KOG0267 Microtubule severing p 32.8 1.7E+02 0.0037 27.9 6.5 74 146-220 675-748 (825)
399 smart00145 PI3Ka Phosphoinosit 32.2 2.4E+02 0.0053 21.9 7.4 16 122-137 90-105 (184)
400 COG5593 Nucleic-acid-binding p 31.8 4.2E+02 0.0091 24.6 13.5 94 154-251 198-293 (821)
401 KOG3534 p53 inducible protein 31.2 2.1E+02 0.0045 27.4 6.8 77 62-138 920-998 (1253)
402 COG1698 Uncharacterized protei 30.7 1.7E+02 0.0036 19.5 8.1 61 185-245 16-81 (93)
403 cd00870 PI3Ka_III Phosphoinosi 30.0 2.5E+02 0.0054 21.4 6.8 15 122-136 92-106 (166)
404 PF14961 BROMI: Broad-minded p 29.3 3.4E+02 0.0073 28.1 8.2 68 228-296 164-234 (1296)
405 KOG0267 Microtubule severing p 29.0 5.1E+02 0.011 25.0 8.8 64 196-260 686-749 (825)
406 PF04388 Hamartin: Hamartin pr 28.6 5.5E+02 0.012 24.9 14.4 86 224-311 69-160 (668)
407 KOG2753 Uncharacterized conser 28.3 3.9E+02 0.0085 23.1 14.0 15 224-238 205-219 (378)
408 PF01816 LRV: Leucine rich rep 28.1 51 0.0011 16.2 1.5 10 5-14 1-10 (26)
409 PF12243 CTK3: CTD kinase subu 27.6 2.5E+02 0.0055 20.6 8.3 94 194-294 16-120 (139)
410 PF12783 Sec7_N: Guanine nucle 27.5 2.7E+02 0.0059 21.0 9.2 71 68-138 72-147 (168)
411 PF14228 MOR2-PAG1_mid: Cell m 26.5 7.5E+02 0.016 25.8 14.6 69 70-138 504-573 (1120)
412 PF04388 Hamartin: Hamartin pr 26.3 6.1E+02 0.013 24.6 14.3 52 201-252 83-138 (668)
413 PF09450 DUF2019: Domain of un 25.7 91 0.002 21.6 2.9 25 267-291 50-74 (106)
414 PF12031 DUF3518: Domain of un 25.6 1.8E+02 0.0039 23.8 4.8 53 8-60 141-203 (257)
415 PHA02855 anti-apoptotic membra 25.5 3E+02 0.0065 20.8 5.7 35 107-141 75-110 (180)
416 KOG3678 SARM protein (with ste 25.5 5.2E+02 0.011 23.6 17.3 149 29-177 179-337 (832)
417 PHA02855 anti-apoptotic membra 24.5 1.1E+02 0.0024 23.0 3.2 34 264-297 76-110 (180)
418 KOG0905 Phosphoinositide 3-kin 24.5 8.3E+02 0.018 25.6 11.0 116 42-170 902-1028(1639)
419 PF08620 RPAP1_C: RPAP1-like, 24.2 1.5E+02 0.0032 19.0 3.4 33 29-61 38-70 (73)
420 KOG4190 Uncharacterized conser 24.2 5.9E+02 0.013 23.7 10.3 90 208-298 418-533 (1034)
421 KOG0890 Protein kinase of the 24.0 1.1E+03 0.024 26.8 24.3 201 123-333 895-1114(2382)
422 PF14222 MOR2-PAG1_N: Cell mor 23.9 6.1E+02 0.013 23.9 28.1 281 9-295 10-348 (552)
423 cd00871 PI4Ka Phosphoinositide 23.4 2.9E+02 0.0063 21.3 5.5 44 81-129 83-127 (175)
424 PF14911 MMS22L_C: S-phase gen 23.3 5.2E+02 0.011 22.8 17.3 35 262-296 254-290 (373)
425 PF11707 Npa1: Ribosome 60S bi 22.8 5E+02 0.011 22.4 20.5 145 188-332 58-237 (330)
426 PF05997 Nop52: Nucleolar prot 21.6 4.3E+02 0.0092 21.2 19.0 176 151-327 4-213 (217)
427 COG2733 Predicted membrane pro 21.6 5.8E+02 0.012 22.7 24.0 105 30-138 109-215 (415)
428 COG4335 DNA alkylation repair 20.5 3.7E+02 0.008 20.0 9.4 103 30-138 39-145 (167)
429 cd04374 RhoGAP_Graf RhoGAP_Gra 20.5 4.4E+02 0.0094 20.8 7.2 40 9-48 87-126 (203)
430 PF13925 Katanin_con80: con80 20.3 3.9E+02 0.0084 20.2 8.3 36 185-220 68-103 (164)
431 KOG3534 p53 inducible protein 20.2 8E+02 0.017 23.8 10.9 73 101-173 920-994 (1253)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-32 Score=242.08 Aligned_cols=333 Identities=53% Similarity=0.800 Sum_probs=314.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----HHHHHHhhhHhhHHh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKEL 77 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~----~~~~~~~ll~~l~~l 77 (337)
|++|++|+++++....+...+|++..+.++.|.+..++.|+.+++|.+.+.-...+....+ +....+.++|.++.+
T Consensus 327 d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 327 DGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred ChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 7899999999999999999999988899999999999999999999999999999999887 444556788999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHH---HhHHHhHhhhchhhHHhhHHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLSQSLLPAIVE 154 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~---~~l~~l~~~~~~~~~~~~llp~l~~ 154 (337)
+.|.+..||.+.+..+..+...+|.+.....+.|.+...++|..+.||.+.. ..+..+....|.+...+..+|.+..
T Consensus 407 v~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e 486 (759)
T KOG0211|consen 407 VLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE 486 (759)
T ss_pred HhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh
Confidence 9999999999999999999999998888899999999999999999999999 5666666777888888999999999
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhh
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 234 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 234 (337)
+..|..|++|.+..+.+..++...|.+.+.+.+-+.+..++.|...++|++|+..+..++..+|.+|..+.++|.+..+.
T Consensus 487 l~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 487 LAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMD 566 (759)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHh
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCC
Q 019679 235 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 314 (337)
Q Consensus 235 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d 314 (337)
.+++|.+|.+.+.++..+++.+|.+.+..+++|.+..+..|+.++||.++++.|..+.+.+......+.+.|++..+..|
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d 646 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSD 646 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q 019679 315 PDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 315 ~~~~vr~~a~~al~~l~~~~ 334 (337)
++.+||+.|..|++.+....
T Consensus 647 ~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 647 QELDVRYRAILAFGSIELSR 666 (759)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-26 Score=208.11 Aligned_cols=333 Identities=23% Similarity=0.312 Sum_probs=268.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHhcCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSD 80 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l~~d 80 (337)
|..++||+++++.++.+++.++.+.....++|.+.++..|+...||.+|...+..+.+.+..+ ...+.+.+.+.+..+|
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED 327 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Confidence 789999999999999999999998888899999999999999999999999999999998887 8888999999999999
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc----hhhHHhhHHHHHHHHh
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELA 156 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~llp~l~~~~ 156 (337)
.+|++|....+.+..+...+|++.......+.+..+++|+..++|.++......+..... ++...+.++|.+..+.
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence 999999999999999999999877777889999999999999999999999999888776 4445567889999999
Q ss_pred cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHH---HHHhChHHHHhhHHHHHHHh
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFGPDWAMQHIVPQVLEM 233 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~---~~~~~~~~~~~~l~~~l~~~ 233 (337)
.|.+..+|.+.+.....+...+|.+...+.+.|.+...++|..+.||......+... -...|.....+.++|.+.++
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred hcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 999999999988888887777777666667778888888888888887777443332 23334555666777777777
Q ss_pred hcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCC-------------------------------------
Q 019679 234 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR------------------------------------- 276 (337)
Q Consensus 234 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------------------------------------- 276 (337)
..|.+|++|.+.++.+..++...|.+++.+.+.+.+...+.|.
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL 567 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence 7777777777777777777776665555544444444444444
Q ss_pred --ChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 277 --VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 277 --~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
++.+|.+...++..+++.+|.+.+.++++|.+..+.+|+.++||..+++.+..+...+
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 4555555555555555556667777888888888888888888888888888877654
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-25 Score=192.09 Aligned_cols=333 Identities=20% Similarity=0.247 Sum_probs=266.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-------HHHHhhhHhh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCV 74 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-------~~~~~ll~~l 74 (337)
|+++.+|..+.-.+..++..-|-.. |++++|.+.+++.+++....+.|..+|.++++..... .-..-++|.+
T Consensus 101 d~~~lIr~tvGivITTI~s~~~~~~-wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkf 179 (885)
T KOG2023|consen 101 DASPLIRATVGIVITTIASTGGLQH-WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKF 179 (885)
T ss_pred CchHHHHhhhhheeeeeeccccccc-chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHH
Confidence 6777888887777777776555544 6999999999999999999999999999999864432 1134588999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH---hhHH
Q 019679 75 KELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLL 149 (337)
Q Consensus 75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~ll 149 (337)
.++.++++|++|.-|+.++..+.-...+.. ..+..+..+..+.+|++++||+..+.++..+.+.- ++.+. ..++
T Consensus 180 l~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr-~dkl~phl~~Iv 258 (885)
T KOG2023|consen 180 LQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIV 258 (885)
T ss_pred HHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHH
Confidence 999999999999999999999876555432 34778888999999999999999999999988763 33332 3466
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhhC-hh---hHHHHHHHHHHHHc----------c-------------------
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG---FFDDKLGALCMQWL----------K------------------- 196 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~---~~~~~l~~~l~~~l----------~------------------- 196 (337)
..+....+|.+..|--.+++....+++.-- ++ .+.++++|++++.+ +
T Consensus 259 eyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRf 338 (885)
T KOG2023|consen 259 EYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRF 338 (885)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchh
Confidence 666777789999999999999988887642 22 25678888887655 1
Q ss_pred -----------------c----------cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHH
Q 019679 197 -----------------D----------KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI 249 (337)
Q Consensus 197 -----------------d----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l 249 (337)
| ..|+.|+.++.++..++..+|.+ +.+.++|++.+.+.+..|.+|++++.++
T Consensus 339 hksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAl 417 (885)
T KOG2023|consen 339 HKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLAL 417 (885)
T ss_pred hhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHH
Confidence 0 13899999999999999999755 6788999999999999999999999999
Q ss_pred HHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHH---HhhhCCCCccHHHHHH
Q 019679 250 SLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL---VELSEDPDVDVRFFAT 324 (337)
Q Consensus 250 ~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l---~~l~~d~~~~vr~~a~ 324 (337)
|++++.+-.. +..+.++|++..++.|+.+.||.-++.+|++.++.+-++...+.+.|.| .+..-|++.+|+..|+
T Consensus 418 GAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAc 497 (885)
T KOG2023|consen 418 GAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAAC 497 (885)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999877443 3456799999999999999999999999999998775443333444444 4445688999999999
Q ss_pred HHHHHHHHhhhCC
Q 019679 325 QALQSKDQVMMSG 337 (337)
Q Consensus 325 ~al~~l~~~~~~~ 337 (337)
.|+..+-.-.+++
T Consensus 498 sAfAtleE~A~~e 510 (885)
T KOG2023|consen 498 SAFATLEEEAGEE 510 (885)
T ss_pred HHHHHHHHhccch
Confidence 9999988776653
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-23 Score=187.45 Aligned_cols=328 Identities=17% Similarity=0.237 Sum_probs=261.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD 80 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d 80 (337)
+.+.||+..++.+.++++...++ .|+++++++.+..+++++..|+.|+..|..+...++.. .+...+.+++.+.++|
T Consensus 92 ~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d 170 (1075)
T KOG2171|consen 92 TEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTD 170 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccC
Confidence 56789999999999999999999 79999999999999999999999999999998887765 4567899999999999
Q ss_pred CcHHHHHHHHHHHHhcCcccC--hhhH--HhhhHHHHH----HhhcCCChhHHHHHHHhHHHhHhhhch--hhHHhhHHH
Q 019679 81 SSQHVRSALATVIMGMAPILG--KDAT--IEQLLPIFL----SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLP 150 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp 150 (337)
++..||..++++++.++.... +... ...++|-++ +.+.+.+...-..++.++..+....++ ......++.
T Consensus 171 ~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 171 PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQ 250 (1075)
T ss_pred CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 988899999999999998774 2211 234556444 445566777778888888888876542 122234555
Q ss_pred HHHHHhcC--CchHHHHHHHHHhhHhHhhhCh-----hhHHHHHHHHHHHHcccc----c------------hHHHHHHH
Q 019679 151 AIVELAED--RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDK----V------------YSIRDAAA 207 (337)
Q Consensus 151 ~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~----~------------~~vr~~a~ 207 (337)
...+...+ -+..+|..+++.+..+++.... ..+.+.+++.++..+.|. + ..--..|.
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~ 330 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAE 330 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHH
Confidence 55555544 4578999999999999887321 124556777777766421 1 12355788
Q ss_pred HHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHH
Q 019679 208 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVA 285 (337)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~ 285 (337)
+++..++..+|++.+...+++++..++.+++|..|.+++.+++.++++++.. ...+.++|+++.+++|+++.||.+|+
T Consensus 331 ~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 331 QALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred HHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999988753 24678999999999999999999999
Q ss_pred HHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCC-ccHHHHHHHHHHHHH
Q 019679 286 KVLQSLIPIVDQS---VVEKSIRPCLVELSEDPD-VDVRFFATQALQSKD 331 (337)
Q Consensus 286 ~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~-~~vr~~a~~al~~l~ 331 (337)
.++|+++..+.+. .+.+.+.|+|.....|+. ++|...|+-|+-.+.
T Consensus 411 naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 9999999999876 455678888888777764 588888888877554
No 5
>PRK09687 putative lyase; Provisional
Probab=99.91 E-value=3.8e-22 Score=163.39 Aligned_cols=254 Identities=20% Similarity=0.185 Sum_probs=205.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
-.+.+.+.+.|++..||..++..|..+.+ ..+.+.+..+++|+++.+|..++..|+.+...-. .....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence 36677788899999999999999987764 3566777788999999999999999999875211 124567
Q ss_pred HHHHHh-hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679 111 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 189 (337)
Q Consensus 111 ~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 189 (337)
+.+..+ .+|+++.||..++.+|+.+...- ......+++.+.....|++|.||..++..++.+. .+..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHH
Confidence 778776 78999999999999999985421 1112446667778889999999999999987552 145789
Q ss_pred HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679 190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 269 (337)
Q Consensus 190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 269 (337)
.+..+++|+++.||..|+.+|+.+. .+ .+...+.+...+.|+++.||..++.+++.+.. ...+|.+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence 9999999999999999999999871 11 23577888888999999999999999988542 4788999
Q ss_pred HhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhC-CCCccHHHHHHHHHHH
Q 019679 270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS 329 (337)
Q Consensus 270 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~ 329 (337)
.+.+.+++ +|..++.+|+.++. ...+|.|..+++ ++|..|+..+.+++..
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99998875 78899999999975 468888888876 8899999999999864
No 6
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.91 E-value=4.9e-22 Score=188.57 Aligned_cols=265 Identities=23% Similarity=0.280 Sum_probs=213.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 81 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~ 81 (337)
|+++.||+.+++.|+.+. .+..+|.|.+.+.|+++.||..++..|..+++..+.. +.+...++|+
T Consensus 632 D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------~~L~~~L~~~ 696 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------PALRDHLGSP 696 (897)
T ss_pred CCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------HHHHHHhcCC
Confidence 889999999999999865 3557899999999999999999999999887644332 3455677889
Q ss_pred cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCch
Q 019679 82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 161 (337)
Q Consensus 82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~ 161 (337)
++.||..++..|+.+.. +. .+.+...+.|+++.||..|+.+|+.+... +.+...+.|+++
T Consensus 697 d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~-----------~~l~~~l~D~~~ 756 (897)
T PRK13800 697 DPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDDV-----------ESVAGAATDENR 756 (897)
T ss_pred CHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccCc-----------HHHHHHhcCCCH
Confidence 99999999999998752 11 13567789999999999999999986321 335677899999
Q ss_pred HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHH
Q 019679 162 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241 (337)
Q Consensus 162 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 241 (337)
.||..++..|+.+...- ....+.+..+++|+++.||..|+.+|+.+.. . +.+.+.+...+.|++|.+
T Consensus 757 ~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~~aL~d~d~~V 823 (897)
T PRK13800 757 EVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAATAALRASAWQV 823 (897)
T ss_pred HHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHHHHhcCCChHH
Confidence 99999999998875432 1235778889999999999999999987632 1 224456778889999999
Q ss_pred HHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHH
Q 019679 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 321 (337)
Q Consensus 242 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~ 321 (337)
|..++.+|+.+.. +.-++.|..++.|+++.||.+|+.+|+.+. + .....+.|..+++|.+.+||.
T Consensus 824 R~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 824 RQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTALTDSDADVRA 888 (897)
T ss_pred HHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHHhCCCHHHHH
Confidence 9999999988642 345588899999999999999999999972 1 135667777889999999999
Q ss_pred HHHHHHHH
Q 019679 322 FATQALQS 329 (337)
Q Consensus 322 ~a~~al~~ 329 (337)
.|.+||+.
T Consensus 889 ~A~~aL~~ 896 (897)
T PRK13800 889 YARRALAH 896 (897)
T ss_pred HHHHHHhh
Confidence 99999974
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.9e-21 Score=172.42 Aligned_cols=336 Identities=14% Similarity=0.198 Sum_probs=255.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHH--HHhhhHhh
Q 019679 1 MDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELA--IQHILPCV 74 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~--~~~ll~~l 74 (337)
+++++..|..+...+..+...+|.... ...+.+.+.+.+.|++..||.+++++++.++..+. +..+ ...++|.+
T Consensus 128 ~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~ 207 (1075)
T KOG2171|consen 128 KSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSL 207 (1075)
T ss_pred cCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHH
Confidence 357888999999999999999998664 34799999999999988899999999999998874 2211 11233322
Q ss_pred H----HhcC-------------------------------------------CCcHHHHHHHHHHHHhcCcccChhh---
Q 019679 75 K----ELSS-------------------------------------------DSSQHVRSALATVIMGMAPILGKDA--- 104 (337)
Q Consensus 75 ~----~l~~-------------------------------------------d~~~~vr~~a~~~l~~l~~~~~~~~--- 104 (337)
. ..++ +-+..+|..|++.+..+.+..+...
T Consensus 208 l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 208 LNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred HHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 1 1111 3455677777777776665532111
Q ss_pred --HHhhhHHHHHHhhcCCC----------------hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHH
Q 019679 105 --TIEQLLPIFLSLLKDEF----------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 166 (337)
Q Consensus 105 --~~~~l~~~l~~~l~d~~----------------~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~ 166 (337)
....+++.++.++.|.. ..--..|.++++.++-.+|++.+.+.+++.+..++++++|+-|++
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 23456666666653211 225567888899999888888888899999999999999999999
Q ss_pred HHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcc-hH
Q 019679 167 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPH-YL 240 (337)
Q Consensus 167 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~-~~ 240 (337)
++.+++.+++.++... ..+++++++.++++|+.+.||.+|+.++|+++..+.++. +.+.+.|.+...+.+.. .+
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r 447 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR 447 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH
Confidence 9999999999886543 567899999999999999999999999999999998753 35567777777777654 78
Q ss_pred HHHHHHHHHHHhccccChHH---HHhhHHH-HHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC
Q 019679 241 YRMTILQAISLLAPVMGSEI---TCSQLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED 314 (337)
Q Consensus 241 vR~~~~~~l~~l~~~~~~~~---~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d 314 (337)
|...|+.++-.+.+.+.++. |.+.++. .+..++....+.||..++.+++.++...+.. .+.+.++|.|.+.+..
T Consensus 448 V~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQN 527 (1075)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhC
Confidence 88888888888887776654 3444555 4444556777899999999999999988875 4568899999996543
Q ss_pred C----CccHHHHHHHHHHHHHHhhhC
Q 019679 315 P----DVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 315 ~----~~~vr~~a~~al~~l~~~~~~ 336 (337)
. ...+|.+..+.++.++.+.|.
T Consensus 528 ~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 528 ADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred CCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 2 356788888999999988874
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.8e-22 Score=171.25 Aligned_cols=333 Identities=19% Similarity=0.188 Sum_probs=237.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS 79 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~ 79 (337)
+..|..|+-.+.+++-++..+|.+. .+.++|.+.+.+.++++.+|++++-++|.+++.+... .+...++|++..++.
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 3569999999999999999999888 4889999999999999999999999999999998775 345568999999999
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH---hhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHH
Q 019679 80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVE 154 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~ 154 (337)
|+.+-||+.+|+.++..+.+.-.+...+.+.|.+.. .+-|++..|+++|+.+++.+-+..+.+-+ ...++..+..
T Consensus 445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~ 524 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF 524 (885)
T ss_pred cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999999999999877655554555555554 45699999999999999999888775422 2233333333
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhCh----hhHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHH------
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDW------ 221 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------ 221 (337)
..+--..+--.....+++.++..+|. ..+.+.++|.+. +.++|+++.+ .-.+.++..++..+|.-+
T Consensus 525 af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~ 603 (885)
T KOG2023|consen 525 AFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQP 603 (885)
T ss_pred HHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHH
Confidence 33221111122345667777776654 345666777776 3567777664 344667777777665321
Q ss_pred HHhhHHHHHH---Hhh----cCc-----chHHHHHHHHHHHHhccccChH----HHHhhHHHHHHhhccCCChhHHHHHH
Q 019679 222 AMQHIVPQVL---EMI----NNP-----HYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVA 285 (337)
Q Consensus 222 ~~~~l~~~l~---~~~----~~~-----~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~ 285 (337)
..+.-+..+. +.+ +++ +-.--..++..++.+++.+|.. ...+.++.+++.++.|+.++||+.+.
T Consensus 604 Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~F 683 (885)
T KOG2023|consen 604 VYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAF 683 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHH
Confidence 1111111221 111 121 1112246788888888888753 24567999999999999999999999
Q ss_pred HHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 286 KVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 286 ~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
..||.+.+.+.+. .....++|.+-.-++-....+-..|++|+|.++-.+|.
T Consensus 684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch
Confidence 9999999877433 12344555555433334566889999999999988874
No 9
>PRK09687 putative lyase; Provisional
Probab=99.88 E-value=1.2e-20 Score=154.63 Aligned_cols=244 Identities=16% Similarity=0.098 Sum_probs=196.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHh-cCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSD 80 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l-~~d 80 (337)
|++..||..++.+|+.+. .+.+++.+.+++.|+++.+|..++.+|+.++..-.. ....+|.+..+ .+|
T Consensus 34 d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~~~D 102 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLALED 102 (280)
T ss_pred CCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHhcC
Confidence 789999999999998765 256788999999999999999999999998652111 23456777765 899
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 160 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~ 160 (337)
+++.||..++.+||.++.... .....++..+...+.|+++.||..++.+|+.+.. +..++.|...++|++
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~ 172 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPN 172 (280)
T ss_pred CCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCC
Confidence 999999999999999864221 1123456677788899999999999999987643 457788899999999
Q ss_pred hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 240 (337)
+.||..++..|+.+. .+ .+...+.+...+.|+++.||..|+.+|+.+. . ...+|.+.+.++++.
T Consensus 173 ~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~----~~av~~Li~~L~~~~-- 236 (280)
T PRK09687 173 GDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D----KRVLSVLIKELKKGT-- 236 (280)
T ss_pred HHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C----hhHHHHHHHHHcCCc--
Confidence 999999999999881 11 2457788999999999999999999998743 2 258889999999877
Q ss_pred HHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc-CCChhHHHHHHHHHHH
Q 019679 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQS 290 (337)
Q Consensus 241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~ 290 (337)
+|..++.+++.+.. +..+|.+..++. +++..|+..+..++..
T Consensus 237 ~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 237 VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 56678888888664 367889999886 8889999999988764
No 10
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.6e-19 Score=153.14 Aligned_cols=329 Identities=18% Similarity=0.211 Sum_probs=252.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-HHhhhHhhHHhcCCC
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDS 81 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~~ll~~l~~l~~d~ 81 (337)
++..||+++..++..+........ ...+++.+.+++....-.-|..+...+..+....+.+.. ...++..+.+..+|.
T Consensus 108 ps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk 186 (569)
T KOG1242|consen 108 PSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDK 186 (569)
T ss_pred CcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhccc
Confidence 567788888888877776554433 246777888888777777888888888888776665533 234667777788887
Q ss_pred cHHHHH-HHHHHHHhcCcccCh--hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC
Q 019679 82 SQHVRS-ALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 158 (337)
Q Consensus 82 ~~~vr~-~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d 158 (337)
+...|+ .+..+.......+|. +...-.++|.++..+.|..+.||.++..+...+...+..... +.++|.+..-+.+
T Consensus 187 ~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~ 265 (569)
T KOG1242|consen 187 KSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLE 265 (569)
T ss_pred chhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHH
Confidence 664444 455555555444442 334567788888889999999999999999999998877666 5566666555555
Q ss_pred CchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC
Q 019679 159 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236 (337)
Q Consensus 159 ~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 236 (337)
..|+.+.++++.++.++...+.. ...+.++|.+.+-|.|+.++||+++..++.+++....+.. .+.++|.+.+.+.|
T Consensus 266 ~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~d 344 (569)
T KOG1242|consen 266 AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALAD 344 (569)
T ss_pred HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcC
Confidence 59999999999999887766543 3678899999999999999999999999999999887654 56799999999999
Q ss_pred cchHHHHHHHHHHHHh--ccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHh
Q 019679 237 PHYLYRMTILQAISLL--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVE 310 (337)
Q Consensus 237 ~~~~vR~~~~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~ 310 (337)
++-.+..+ +..++.- .+.... +....++|++.+.+.+.+.+.++.++..++.++.....+ .+...++|.|..
T Consensus 345 p~~~~~e~-~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 345 PSCYTPEC-LDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE 422 (569)
T ss_pred cccchHHH-HHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence 98555443 3333332 222333 356789999999999999999999999999999988332 567889999999
Q ss_pred hhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 311 LSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 311 l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
-..|..|++|..+.+||+.+.+-+|.
T Consensus 423 ~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 423 NLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988877663
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.3e-19 Score=154.35 Aligned_cols=331 Identities=17% Similarity=0.172 Sum_probs=262.5
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH-HHHHHHHhHHHHHHhhCHHHHHH---hhhHhhHHh-
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPELAIQ---HILPCVKEL- 77 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~-vR~~a~~~l~~~~~~~~~~~~~~---~ll~~l~~l- 77 (337)
+.++.+..++++++.++..--|...|+++++.+..-..++.+. +|+.+++++|.+++.++++...+ .++.-+.+.
T Consensus 102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gm 181 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGM 181 (859)
T ss_pred CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhc
Confidence 5677888999999999998888888999999999998887776 99999999999999999984433 344444443
Q ss_pred -cCCCcHHHHHHHHHHHHhcCc----ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679 78 -SSDSSQHVRSALATVIMGMAP----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL 149 (337)
Q Consensus 78 -~~d~~~~vr~~a~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll 149 (337)
.+.++..||.++..+|.+-.+ .+..+.-...++...++.-+.++.+|+.+|+.+|-.+....-. .-+.+.++
T Consensus 182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf 261 (859)
T KOG1241|consen 182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF 261 (859)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999987443 4445656678999999999999999999999999999876532 11224455
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhh---------------Chh------hHHHHHHHHHHHHcc-------ccchH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQL---------------GVG------FFDDKLGALCMQWLK-------DKVYS 201 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~---------------~~~------~~~~~l~~~l~~~l~-------d~~~~ 201 (337)
+.-.....+.+..|...+++..+.++..- .+. ...+.++|.++++|. |++|+
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 55556667788889888888888665421 110 123478899988874 46799
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCCh
Q 019679 202 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVP 278 (337)
Q Consensus 202 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 278 (337)
+-.+|-.+|..+++..|.+ +.+.++|++.+.+++++|+.|.+++.++|.+.+.-... ......+|.+..+..|++-
T Consensus 342 p~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 9999999999999988755 66789999999999999999999999999998766543 3455788999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcH----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 279 NIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 279 ~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
.||..+..+|+++++.+.. ......+++.+..-++| .|+|-..+++++..++++..
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH
Confidence 9999999999999987653 34556667777776777 89999999999999997654
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.84 E-value=5e-19 Score=168.20 Aligned_cols=244 Identities=21% Similarity=0.184 Sum_probs=195.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
-++.+.+.+.|+++.||..|+..|+.+.. ...+|.|.+++.|+++.||..++.+|..+.+..+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 47788899999999999999999998753 34567777888999999999999999988653332 2
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 190 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 190 (337)
+.+...+.++++.||..++..|+.+... . .+.+...+.|+++.||..++..|..+. .. +.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~~-------~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVD----DV-------ES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhccc----Cc-------HH
Confidence 5667778899999999999999886421 1 124556789999999999999988752 11 33
Q ss_pred HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHH
Q 019679 191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 270 (337)
Q Consensus 191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 270 (337)
+..++.|+++.||..++.+|+.+...- ...++.+..+++|+++.+|.+++.+|+.+... ..+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 567899999999999999999875421 12367788899999999999999999886431 22335577
Q ss_pred hhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 271 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 271 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
..+.|+++.||.+|+++|+.+.. ....+.|..+++|+++.||..|+.+|+.+
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 88999999999999999998752 34457788889999999999999999886
No 13
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-19 Score=163.03 Aligned_cols=270 Identities=22% Similarity=0.287 Sum_probs=225.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH------HHHHHhhhHhhHHhc
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKELS 78 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~------~~~~~~ll~~l~~l~ 78 (337)
...|..+++.+..++.+...+.....++|.+..++.|+++.||..|+.+|.++...+.+ ..+.++++|.+..++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 35688999999999999999888899999999999999999999999999998876532 267899999999999
Q ss_pred CC-CcHHHHHHHHHHHHhcCcccC------------------------h-------hhHHhhhHHHHHHhhcCCChhHHH
Q 019679 79 SD-SSQHVRSALATVIMGMAPILG------------------------K-------DATIEQLLPIFLSLLKDEFPDVRL 126 (337)
Q Consensus 79 ~d-~~~~vr~~a~~~l~~l~~~~~------------------------~-------~~~~~~l~~~l~~~l~d~~~~vr~ 126 (337)
+| ....||.+.+.+|+.++...- . ....+.+-..+..++.|+.+.||+
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr 596 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR 596 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99 677999999999998865321 0 001234556677889999999999
Q ss_pred HHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHH
Q 019679 127 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA 206 (337)
Q Consensus 127 ~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 206 (337)
+.++++..++..+|.+.-.+.+++++..+++|++|+.|.+.++.+.-++-..|.....+.++|.+.+.|.|.++.|-..|
T Consensus 597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a 676 (1431)
T KOG1240|consen 597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA 676 (1431)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence 99999999999999887778899999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHhC-hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc
Q 019679 207 ANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 274 (337)
Q Consensus 207 ~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (337)
+.++..+++.-- .+.....++..+.-++-+|+..+|.+++..|..++..++.....-.++|.+..++.
T Consensus 677 L~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 677 LGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999998887421 12233446666777788999999999999999999888866555566666555544
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.83 E-value=6.2e-18 Score=147.40 Aligned_cols=321 Identities=20% Similarity=0.283 Sum_probs=256.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~----~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~ 75 (337)
|.++..|++.+.++..+...+|...... .++.-+.-.++..+.+.. -.+..++.+...++. +.+...+...+.
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 6778899999999999999988755433 344444444444333332 344566666666555 345556666777
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCc---ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---HhhHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAP---ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLL 149 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll 149 (337)
..++++++.||..++..++.++. .++++....++--++.+.+...+|+|--..+.++..+...+|.... .+.++
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll 885 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL 885 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence 78999999999999999998774 5667777778888899999999999999999999999999875443 36789
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
|.+..++++.+..|...++..++.++..-.......+.+.+++ .+|+..+.++|.+|..++|.+++.+|++. +
T Consensus 886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd----V 961 (1172)
T KOG0213|consen 886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD----V 961 (1172)
T ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH----H
Confidence 9999999999999999999999999876543222233444544 55678899999999999999999999974 6
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhh
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSI 304 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i 304 (337)
+..+++.++.+..+.|.+...+|+-.++.+|.- .++|.+.+-..-++..|+....++++.+.+.+|+. .+...+
T Consensus 962 LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen 962 LATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred HHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence 667777777777888988888898888888764 57888888888999999999999999999999875 566889
Q ss_pred hHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 305 RPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 305 ~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
.|+|...+.|.|.-.|+.|..++..++
T Consensus 1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999887764
No 15
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=2.7e-17 Score=150.09 Aligned_cols=291 Identities=18% Similarity=0.242 Sum_probs=210.0
Q ss_pred hHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---h---h
Q 019679 31 VVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---K---D 103 (337)
Q Consensus 31 l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~---~ 103 (337)
+++.+...+.. ...+-|..|++.|..++.++..+...+.++|++..+++|+...||..|+.++..+..... + .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 55666655544 346778899999999999999998889999999999999999999999998887654332 1 2
Q ss_pred hHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH-----HhcCCchHHHHHHHHHhhHhHhh
Q 019679 104 ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-----LAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 104 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~-----~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
.+.++++|.+..++.| ....||.+-+.+++.++..... ++..-.+ +.++++.+ .....-..
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r------Fle~~q~~~~~g~~n~~nse-------t~~~~~~~ 569 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR------FLELTQELRQAGMLNDPNSE-------TAPEQNYN 569 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH------HHHHHHHHHhcccccCcccc-------cccccccc
Confidence 3558899999999999 6678999999999998875321 1111111 12332221 00000000
Q ss_pred hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 257 (337)
Q Consensus 178 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~ 257 (337)
.+.......+-..+..++.|+.+.||.+.+..|..++..||.+...+.+++++..+++|++|+.|.+....|..++-..|
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 01111223345566778899999999999999999999999887778899999999999999999999999988888888
Q ss_pred hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh--hcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI--VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
.....++++|.+.+.+.|..+.|-..|+.++..+++. +....+ ..++.....++--++.=||..++..|..++..++
T Consensus 650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 8777889999999999999999999999998888763 233322 2222222233333444589999888888887765
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.77 E-value=3.9e-16 Score=136.38 Aligned_cols=317 Identities=16% Similarity=0.180 Sum_probs=252.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~ 75 (337)
++++.||+.+++.++.++..+.. +.....+--.+.+.+..++++|--..+.++..+.+.++-.. =.+.++|.+-
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 57899999999999999976643 33455677788999999999999999999988888764321 1356778887
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH---hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 152 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l 152 (337)
..+.+...+|...++..++.++..-+......+.+.++.+ +++.-+.++|+++.++++-+++.+|+..+. ..+
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL----atL 965 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL----ATL 965 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH----HHH
Confidence 7888999999999999999999866654445666666555 456678899999999999999999996554 444
Q ss_pred HHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHH
Q 019679 153 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQV 230 (337)
Q Consensus 153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l 230 (337)
.+-++..+-+.|.+..-.++.+++.+|+-. ++|.+++=-.-++..|+...++++..+.+..|. ..+...+.|.+
T Consensus 966 lnnLkvqeRq~RvcTtvaIaIVaE~c~pFt----VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~Pll 1041 (1172)
T KOG0213|consen 966 LNNLKVQERQNRVCTTVAIAIVAETCGPFT----VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLL 1041 (1172)
T ss_pred HhcchHHHHHhchhhhhhhhhhhhhcCchh----hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHH
Confidence 444444445567777777888888888754 778888777889999999999999999998875 33566789999
Q ss_pred HHhhcCcchHHHHHHHHHHHHhc---cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHH
Q 019679 231 LEMINNPHYLYRMTILQAISLLA---PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC 307 (337)
Q Consensus 231 ~~~~~~~~~~vR~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~ 307 (337)
.+.+.|++.-+|++++..+..++ ..+|.+....+++.+++.-.-+++|.|.++...++..+...+|+..+..++...
T Consensus 1042 eDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QG 1121 (1172)
T KOG0213|consen 1042 EDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQG 1121 (1172)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 99999999999999999999886 345667778899999999999999999999999999999999998777776655
Q ss_pred HHhhhCCCCccHHHHHHHHHHHH
Q 019679 308 LVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 308 l~~l~~d~~~~vr~~a~~al~~l 330 (337)
|- -+...||..-.+..+.+
T Consensus 1122 LF----HParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1122 LF----HPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred cc----CcHHHHHHHHHHHHHhH
Confidence 43 35666776666555544
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.77 E-value=3.8e-16 Score=142.22 Aligned_cols=317 Identities=17% Similarity=0.124 Sum_probs=224.5
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
++...|+.+--.+..+...-++ ...-..+.+.+-+.++++.+|..|+.+++.+. ..+..+.+.|.+.+++.|++
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~ 127 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPS 127 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCc
Confidence 4455555555555544432111 11236777778888888999999988888775 23455678888889999999
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCCc
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRH 160 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~~ 160 (337)
|.||+.|+.++..+....++..... +++.+.+++.|+++.|+.+|+..+..+ +..+.. .+.+.+.+.+.+.+.+.+
T Consensus 128 ~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~ 205 (526)
T PF01602_consen 128 PYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPD 205 (526)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccc
Confidence 9999999999999887655432223 789999999999999999999988888 221111 334556666666667888
Q ss_pred hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 240 (337)
+..+..+++.+..++..-........+++.+...+.+.++.|+..+++++..+... ......+++.+..++.+++..
T Consensus 206 ~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~n 282 (526)
T PF01602_consen 206 PWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPN 282 (526)
T ss_dssp HHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHH
T ss_pred hHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccch
Confidence 88888888888776644322211146888888888899999999998888865432 224667889999999999999
Q ss_pred HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCC-CccH
Q 019679 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDP-DVDV 319 (337)
Q Consensus 241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~-~~~v 319 (337)
+|..++.++..++.......+ .....+..+..+++..+|..++..+..++..- ....+++.|...+.+. +.++
T Consensus 283 vr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~----n~~~Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 283 VRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANES----NVKEILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHC--HHH
T ss_pred hehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhccccc----chhhHHHHHHHHHHhccchhh
Confidence 999999999999876522222 33333444455888999999999998887632 2355777777777444 7889
Q ss_pred HHHHHHHHHHHHHhhhC
Q 019679 320 RFFATQALQSKDQVMMS 336 (337)
Q Consensus 320 r~~a~~al~~l~~~~~~ 336 (337)
|..++++++.++..+..
T Consensus 357 ~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHHHHHHHHHHHHGS
T ss_pred hhhHHHHHHHHHhccCc
Confidence 99999999999987754
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.9e-16 Score=133.14 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=242.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 5 WRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
...|..+..+.......+|+..- .-+++|.+.....|..+.||.++..+...+...++...+...+.+.+..+..+ .
T Consensus 189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-k 267 (569)
T KOG1242|consen 189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-K 267 (569)
T ss_pred hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-h
Confidence 34455677788888888886442 23678888888899999999999999999999988887655455555555555 9
Q ss_pred HHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679 83 QHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 160 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~ 160 (337)
|+..+++++.++.++...+... ....++|.+.+.+.|..++||+++..++..+++.+....+ +.++|.+.+.+.|++
T Consensus 268 WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALADPS 346 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhcCcc
Confidence 9999999999999998777644 4578999999999999999999999999999999887765 789999999999998
Q ss_pred hHHHHHHHHHhh-HhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh-ChHH---HHhhHHHHHHHhhc
Q 019679 161 WRVRLAIIEYIP-LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDW---AMQHIVPQVLEMIN 235 (337)
Q Consensus 161 ~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~---~~~~l~~~l~~~~~ 235 (337)
..+..+.-.... .++..... .....++|++-+.+.+.+...+..++..++.++... ++.+ +...++|-+...+.
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred cchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc
Confidence 666655433222 22333333 345679999999999999999999999999999887 4433 46678888888888
Q ss_pred CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh-hhC
Q 019679 236 NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSE 313 (337)
Q Consensus 236 ~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~ 313 (337)
++-+.+|..+.++++.+.+..|...+ ....|.+...+.++.. .-|..+++.++.+....+-+.+ ..++|.+.. ...
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHHHHhh
Confidence 99899999999999999998887766 7888999998876654 4566788888888887776654 344444433 332
Q ss_pred -CCCccHHHHHHH
Q 019679 314 -DPDVDVRFFATQ 325 (337)
Q Consensus 314 -d~~~~vr~~a~~ 325 (337)
..++.+|.....
T Consensus 504 ~~~~~~~~dg~~~ 516 (569)
T KOG1242|consen 504 VLIDERIRDGVIW 516 (569)
T ss_pred ccchhhhccCeee
Confidence 233444443333
No 19
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=7.6e-16 Score=130.69 Aligned_cols=334 Identities=15% Similarity=0.132 Sum_probs=260.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcccchHH----HHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhh
Q 019679 1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP----AYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCV 74 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~----~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l 74 (337)
.|+.+.-|++++.-+..+.+.+-......++=. ...++..+++..-|++++..++..+-.++.+ .+...++|.+
T Consensus 10 tdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv 89 (675)
T KOG0212|consen 10 TDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPV 89 (675)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHH
Confidence 378889999999999999987765444333322 4445556677778889998888887777665 4667789999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCcccChhhH--HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch----hhHHhhH
Q 019679 75 KELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSL 148 (337)
Q Consensus 75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l 148 (337)
..++.|.+.+||..||+.+.++++....+.. .+.+...++++..|++..||.+ +..+..+.+.+-. ..-.+.+
T Consensus 90 ~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ 168 (675)
T KOG0212|consen 90 LNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEF 168 (675)
T ss_pred HHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHH
Confidence 9999999999999999999999987765542 3788899999999999999965 4556666655432 1225789
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--HH-HH
Q 019679 149 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DW-AM 223 (337)
Q Consensus 149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~-~~ 223 (337)
+|.+.+.+...++..|...++++..+-...+-+. +.+.+++.++++|+|++.+||..+-.+++.+...+.. .. -.
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~ 248 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY 248 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 9999999999999999999999998877665554 6788999999999999999999999999999877643 22 24
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcHHHH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSVV 300 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~~~ 300 (337)
...++.+...+.+++...+..|+.++..+....|... +.+.++..++.++.|..+ .++..+...-+.+.+.++.+..
T Consensus 249 ~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~ 328 (675)
T KOG0212|consen 249 DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL 328 (675)
T ss_pred ccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence 5677888888888999999999999999998887653 456777888888888877 5777666555555554443321
Q ss_pred -----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 301 -----EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 301 -----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
...++..+.+.+.+...+.|..+.+.+..+-..++
T Consensus 329 ~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 329 KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 24688888888888899999999999888776654
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.75 E-value=8.2e-16 Score=131.91 Aligned_cols=177 Identities=19% Similarity=0.225 Sum_probs=144.7
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHHHH
Q 019679 147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAM 223 (337)
Q Consensus 147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 223 (337)
.++|.+..++.+++..+....+..++.++...+...-..+.+.+++ ..|+..+.++|..|..++|-+++.+|++.
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd-- 765 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD-- 765 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH--
Confidence 4777777788888888999999999988876433222223444444 45678899999999999999999999984
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVE 301 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~ 301 (337)
++..+++.++.+..+.|.+...+++-.++++|+- .++|.+..-...++..|+....+++..+.+.+|+. .+.
T Consensus 766 --vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 766 --VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred --HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777778889999999999999988874 57788888888999999999999999999999876 567
Q ss_pred HhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 302 KSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
..+.|.|...+.|.|+-.|+.|...+..+.
T Consensus 840 y~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 840 YSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 889999999999999999999988776654
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6e-15 Score=129.43 Aligned_cols=333 Identities=16% Similarity=0.202 Sum_probs=250.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 78 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~ 78 (337)
|++|..-+++..+|.-++...|.+.. ++++|++.+-++.+++.-|.+++.+++.+.+.-.++ .+....+|.+..+.
T Consensus 337 ~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm 415 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM 415 (859)
T ss_pred cccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh
Confidence 67799999999999999999999885 699999999999999999999999999998876655 34456788888888
Q ss_pred CCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch-----------hh
Q 019679 79 SDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----------DL 143 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----------~~ 143 (337)
.|++-.||.++.+++|.+++.++. +.....+++.+.+-++| .|.|-.+++.++..+++.... ..
T Consensus 416 ~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~ 494 (859)
T KOG1241|consen 416 SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATP 494 (859)
T ss_pred cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccch
Confidence 999999999999999999987653 33345566677777766 589999999999998876532 11
Q ss_pred HHhhHHHHHHHHhc--C-CchHHHHHHHHHhhHhHhhhChhhHH--HHHHHHHHH---------Hcc----ccchHHHHH
Q 019679 144 LSQSLLPAIVELAE--D-RHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQ---------WLK----DKVYSIRDA 205 (337)
Q Consensus 144 ~~~~llp~l~~~~~--d-~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~---------~l~----d~~~~vr~~ 205 (337)
+.+.++..|.+... | .+...|.++.++|..+++......+. ..+.+..+. .++ +....+...
T Consensus 495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~ 574 (859)
T KOG1241|consen 495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSL 574 (859)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence 22333333333322 2 45689999999999999988765421 122222222 111 122356667
Q ss_pred HHHHHHHHHHHhChH--HHHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhc-cCCChh
Q 019679 206 AANNVKRLAEEFGPD--WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINAS-KDRVPN 279 (337)
Q Consensus 206 a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~ 279 (337)
.+..|..+...++++ ...+.++..+..+++. ++.-+...++.+++.++..+|+.+ +.+.+.|++...| +-....
T Consensus 575 Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~q 654 (859)
T KOG1241|consen 575 LCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQ 654 (859)
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHH
Confidence 778888888888764 2466788899999987 557788899999999999998764 6788999999999 555679
Q ss_pred HHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHHhhhC
Q 019679 280 IKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 280 vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~~~~~ 336 (337)
|..+++...+.++..++.+ .+.+.++..|...+..+ +.+|+-.....++.++-+.|.
T Consensus 655 Vc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~ 715 (859)
T KOG1241|consen 655 VCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA 715 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence 9999999999999999876 34556666666665543 345677777888888877664
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.74 E-value=5.7e-15 Score=145.19 Aligned_cols=327 Identities=13% Similarity=0.118 Sum_probs=254.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHh
Q 019679 4 SWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKEL 77 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l 77 (337)
+..+|..++.++..++..-.. .......+|.+.+++.+++..+++.++..++.++...... ......+|.+.++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 457888888888887743211 1112346899999999999999999999999987643322 2334589999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccCh--hhH-HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGK--DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 154 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~ 154 (337)
+..++.++|+.|++++++++..-.+ ... ....+|.+.+++++.++.++..++.++..+......+ .++.+..
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~ 571 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTA 571 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHH
Confidence 9999999999999999999873211 112 2367899999999999999999999999998754332 3466777
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhChhhH------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHhh
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQH 225 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~ 225 (337)
++...+..++..++..++.+......+.. ....+|.+.++++.++..+++.|+..|..++..-.. ......
T Consensus 572 LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag 651 (2102)
T PLN03200 572 LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE 651 (2102)
T ss_pred HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence 78878888888889888888665543321 134789999999999999999999999998763211 123456
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--H
Q 019679 226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V 299 (337)
Q Consensus 226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~ 299 (337)
.+|.++.++.+.+..+|..++++++.+......+. .....+|.+.+++++++..++..++.+|..+...-... .
T Consensus 652 aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei 731 (2102)
T PLN03200 652 IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEA 731 (2102)
T ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHH
Confidence 78999999999999999999999999986433221 23457899999999999999999999999998765433 3
Q ss_pred HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 300 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 300 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
.....++.|.+++++.++++|..|+.+|..+...+.
T Consensus 732 ~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 346678999999999999999999999999887654
No 23
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.4e-15 Score=126.93 Aligned_cols=328 Identities=18% Similarity=0.148 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679 7 VRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 78 (337)
Q Consensus 7 vR~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~ 78 (337)
.+..+...+..+...... ......++|.+.+.+. +.++.++..|+.+|..++...... -.....+|.+.+++
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 355555555555433221 1123468999999995 677999999999999999865544 23455789999999
Q ss_pred CCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCCh-hHHHHHHHhHHHhHhhhchh---hHHhhHHHH
Q 019679 79 SDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID---LLSQSLLPA 151 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~~llp~ 151 (337)
.+++..||+.++++||+++...+. ......+++.++.++...++ ...+.+..++..++..-.+. .....++|.
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 999999999999999999864432 12224577888888877665 67778899999998765321 334789999
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhh
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQH 225 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~ 225 (337)
+..++.+.+..|..-++.+++.++..-... .....+.|.+..+|...+..|+..|++++|.+...-+.+ .+...
T Consensus 242 L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~ 321 (514)
T KOG0166|consen 242 LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG 321 (514)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC
Confidence 999999999999999999999888654332 133468899999999999999999999999977543322 12446
Q ss_pred HHHHHHHhhc-CcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---
Q 019679 226 IVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--- 298 (337)
Q Consensus 226 l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--- 298 (337)
.+|.+..++. ++...+|..|++.++.+...... ......++|.+..+++.....+|+.|+.+++.+...-.++
T Consensus 322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~ 401 (514)
T KOG0166|consen 322 ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIK 401 (514)
T ss_pred hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHH
Confidence 7899999998 66677999999999998763221 2234568999999999999999999999999997654443
Q ss_pred H-HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 299 V-VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 299 ~-~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
+ +..-+++.|..++.-+|.++-..+..+++.+..+.
T Consensus 402 yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 402 YLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 1 23448888888887777777778888888876653
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.71 E-value=1.2e-14 Score=132.37 Aligned_cols=295 Identities=17% Similarity=0.149 Sum_probs=226.5
Q ss_pred hCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679 22 VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 101 (337)
.|.+. +...+.+.+++.+++...|+.+...+..+...-+. ..-.+...+.+-++++++.+|..|+.+++.+..
T Consensus 36 ~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--- 108 (526)
T PF01602_consen 36 LGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--- 108 (526)
T ss_dssp TT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---
T ss_pred cCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---
Confidence 45544 47899999999999999999999888888765333 223466677778899999999999999999884
Q ss_pred hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh
Q 019679 102 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181 (337)
Q Consensus 102 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 181 (337)
....+.+.|.+.+++.|+++.||+.|+.++..+.+.. ++.....++|.+.+++.|+++.|+.+++..+..+ +.-+..
T Consensus 109 -~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~ 185 (526)
T PF01602_consen 109 -PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS 185 (526)
T ss_dssp -HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH
T ss_pred -cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch
Confidence 4456789999999999999999999999999998873 3433222799999999999999999999999888 211111
Q ss_pred --hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHH--hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679 182 --FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 257 (337)
Q Consensus 182 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~ 257 (337)
...+.+.+.+.+.+.+.+++++...++.+..+...- .. .. ..+++.+...+.+.++.++..++.++..+....
T Consensus 186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~-~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~- 262 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PE-DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP- 262 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-
T ss_pred hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hh-hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-
Confidence 345667777777779999999999999988765432 11 22 468888888888888999999998888766532
Q ss_pred hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
.....+++.+..++.++++++|..+++++..++....+. +. .....+..+..|++..||..+.+.+..++..
T Consensus 263 --~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 263 --ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp --HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred --HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-hh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 256788999999999999999999999999998876332 22 2222333455588999999999988887653
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.71 E-value=1.9e-14 Score=123.68 Aligned_cols=313 Identities=15% Similarity=0.140 Sum_probs=244.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~ 75 (337)
++.+.||..+++.++.++..+. +......+-..+.+.+...+++|--..+.++..+.+..+-.. =...++|.+-
T Consensus 615 ~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~lt 694 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLT 694 (975)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccccc
Confidence 4678999999999999987665 333344566778888988899998888888887766543321 1245778887
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh---hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 152 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l 152 (337)
..+.+...+|....+..++.++...+...-..+.+.+..++ ++.-+.++|++|..+++-+++.+|++.+ +..+
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdv----L~~L 770 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDV----LDIL 770 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHH----HHHH
Confidence 78888999999999999999997666544455666665554 5667899999999999999999998654 4444
Q ss_pred HHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHH
Q 019679 153 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQV 230 (337)
Q Consensus 153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l 230 (337)
.+-++..+-+.|.+..-.++.+++.+|+-. ++|.++.=-+.++..|+...++++..+.+..|.. .+...+.|.+
T Consensus 771 lnnLkvqeRq~RvctsvaI~iVae~cgpfs----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPll 846 (975)
T COG5181 771 LNNLKVQERQQRVCTSVAISIVAEYCGPFS----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLL 846 (975)
T ss_pred HhcchHHHHHhhhhhhhhhhhhHhhcCchh----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555677777788888999998854 6788777677789999999999999999998764 3466789999
Q ss_pred HHhhcCcchHHHHHHHHHHHHhccc---cChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHH
Q 019679 231 LEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC 307 (337)
Q Consensus 231 ~~~~~~~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~ 307 (337)
.+.+.|++.-+|+++...+..++-. .|.+...-+++.+++.-.-+++|.|..+.-..+..++..+|+..+..++...
T Consensus 847 eDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qG 926 (975)
T COG5181 847 EDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQG 926 (975)
T ss_pred HhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 9999999999999999999988643 3456667789999999999999999999999999999999987665555543
Q ss_pred HHhhhCCCCccHHHHHHHH
Q 019679 308 LVELSEDPDVDVRFFATQA 326 (337)
Q Consensus 308 l~~l~~d~~~~vr~~a~~a 326 (337)
| .-++..||..=...
T Consensus 927 L----FHPs~~VRk~ywtv 941 (975)
T COG5181 927 L----FHPSSTVRKRYWTV 941 (975)
T ss_pred c----cCchHHHHHHHHHH
Confidence 3 44677787544433
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.8e-14 Score=123.84 Aligned_cols=302 Identities=16% Similarity=0.178 Sum_probs=230.3
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--H-H-HHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh--
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--P-E-LAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD-- 103 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~-~-~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~-- 103 (337)
..+...+.+.+.++..+..+...+.++.+.-. + + .+...++|.+.+++. +.++.++..++++|.+++..-...
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 46666777777788778888888887765432 2 2 234468888877775 778999999999999999744322
Q ss_pred -hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hHHhhHHHHHHHHhcCCch-HHHHHHHHHhhHhHhhh
Q 019679 104 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQL 178 (337)
Q Consensus 104 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~ 178 (337)
......+|+|..++.+++..|++.|+.+|+.++..... + .+...+++.+..++..... .....+..+++.++...
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 23357889999999999999999999999999876331 1 2233455666666655443 66777788888888776
Q ss_pred Chh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679 179 GVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISL 251 (337)
Q Consensus 179 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~ 251 (337)
.+. .....++|.+..++.+.+.+|...|+.++..++..- ++. +...++|.+.+++.+++..++..+++++|.
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 322 245679999999999999999999999999998653 332 234688999999999999999999999999
Q ss_pred hccccChH---HHHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHH
Q 019679 252 LAPVMGSE---ITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFAT 324 (337)
Q Consensus 252 l~~~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~ 324 (337)
++..-+.. ......+|.+..++. .+...+|..|+.++++|+..-..+ .+...++|.|..++...+-++|..|+
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 87554422 234468899999998 566679999999999997632221 44567999999999988999999999
Q ss_pred HHHHHHHHh
Q 019679 325 QALQSKDQV 333 (337)
Q Consensus 325 ~al~~l~~~ 333 (337)
+|++.+.+.
T Consensus 386 waIsN~ts~ 394 (514)
T KOG0166|consen 386 WAISNLTSS 394 (514)
T ss_pred HHHHhhccc
Confidence 999987653
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.69 E-value=4.9e-14 Score=138.78 Aligned_cols=326 Identities=14% Similarity=0.171 Sum_probs=250.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HH-HHhhhHhhHH
Q 019679 3 KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LA-IQHILPCVKE 76 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~-~~~ll~~l~~ 76 (337)
.+..+|+.++..++.++..-.. .......+|.+.+++.+++..+|+.|+.+++.++..-... .+ ....+|.+.+
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 4678899999999988753222 1123468999999999999999999999999998742111 22 2357888889
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH------HhhHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLP 150 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~llp 150 (337)
++++.+++++..++.+|.++..... ...++.+..++..+++.++..++..++.+......+.. ....+|
T Consensus 538 LL~sgd~~~q~~Aa~AL~nLi~~~d-----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~ 612 (2102)
T PLN03200 538 LLKNGGPKGQEIAAKTLTKLVRTAD-----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612 (2102)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH
Confidence 9999999999999999999976432 23447778888888899999999999988775544321 135789
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HH
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AM 223 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~ 223 (337)
.+.+++++.+..++..++..+..++..-.. .......+|.++.++++.+..+++.++.+|+.+......+. ..
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999988764322 22345678999999999999999999999999986432221 23
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH-H
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-V 300 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~-~ 300 (337)
...+|.+++++++.+..++..++.++..++..-.. +......++.+..++.+.++++|..|+.+|..++.....+. +
T Consensus 693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~ 772 (2102)
T PLN03200 693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL 772 (2102)
T ss_pred cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH
Confidence 45889999999999999999999999999865532 23445779999999999999999999999999998876443 1
Q ss_pred -----HHhhhHHHHhhhCCCCccHHHH--HHHHHHHHHHh
Q 019679 301 -----EKSIRPCLVELSEDPDVDVRFF--ATQALQSKDQV 333 (337)
Q Consensus 301 -----~~~i~~~l~~l~~d~~~~vr~~--a~~al~~l~~~ 333 (337)
..-.+..|..+++..+.+.-.. |..+|..+++.
T Consensus 773 ~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 773 KDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 1234555556666666666554 78888877764
No 28
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.69 E-value=2.5e-13 Score=116.04 Aligned_cols=331 Identities=13% Similarity=0.085 Sum_probs=245.3
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCHHHHHHh---hhHhhH--H
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPELAIQH---ILPCVK--E 76 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~~~~~~~---ll~~l~--~ 76 (337)
+.|+.-.++++.++.++..--|.-.|+.++..+..-..|++| .++..++.+++.+++.-.|+...+. ++--+. .
T Consensus 106 ~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga 185 (858)
T COG5215 106 PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGA 185 (858)
T ss_pred CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhh
Confidence 567777889999999999888888889999888888888775 5788899999999998888643322 332222 2
Q ss_pred hcCCCcHHHHHHHHHHHHh-cCc---ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679 77 LSSDSSQHVRSALATVIMG-MAP---ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL 149 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~-l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll 149 (337)
+-+.++..||.+++.+|.. +.. .+..+.....++...++.-+.++.++..+++-++..+....-. ..+.+.+.
T Consensus 186 ~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 186 LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999987 322 3333445678889999999999999999999999988765421 11223344
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhh-Chh------------------hHHHHHHHHHHHHcc-------ccchHHH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG------------------FFDDKLGALCMQWLK-------DKVYSIR 203 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~------------------~~~~~l~~~l~~~l~-------d~~~~vr 203 (337)
........+.+.+|...+++..+.+++.- +.+ .....++|.++++|. +++|++-
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 44456668888999999999988877542 100 012347888888884 3678999
Q ss_pred HHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCChhH
Q 019679 204 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNI 280 (337)
Q Consensus 204 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v 280 (337)
.+|..+|..+.+..|.. +.+.++.++.+.+.+++|+.|.+++.++|++.+.-... .+.+..+|.+.....|+.-.|
T Consensus 346 maA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 346 MAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred hhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 99999999999988754 56669999999999999999999999999998765543 345677888899999999999
Q ss_pred HHHHHHHHHHHhhhhcHHHH-HHhhhHHHHh---hhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 281 KFNVAKVLQSLIPIVDQSVV-EKSIRPCLVE---LSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 281 r~~a~~~l~~i~~~~~~~~~-~~~i~~~l~~---l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+..++.++++++.++....- ..++.+.... -+.| .+.+-..+.++...+..++.
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhh
Confidence 99999999999987643211 0122222222 2334 66777788888888777664
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.68 E-value=7.5e-14 Score=125.25 Aligned_cols=323 Identities=16% Similarity=0.142 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHhCCCCc--ccchHHHHHHhc---CCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhc---
Q 019679 9 YMVANQLYELCEAVGPEPT--RSDVVPAYVRLL---RDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELS--- 78 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~---~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~--- 78 (337)
+.-+++++.++...|.... .+.++|.+.+++ +..+++.|+.+++++..|...++.+. +.+.++..+.+.+
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYD 310 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYD 310 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccC
Confidence 4567889999998887654 457999999999 77889999999999999999988763 2222333322211
Q ss_pred -------------------------------CCCcHHHHHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHH
Q 019679 79 -------------------------------SDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVR 125 (337)
Q Consensus 79 -------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr 125 (337)
+|-+|+||++|++++..+.....+. .+.+.+-|.+..-+++.+..|+
T Consensus 311 PNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk 390 (1233)
T KOG1824|consen 311 PNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVK 390 (1233)
T ss_pred CCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHH
Confidence 1457999999999999887544322 2446788899999999999999
Q ss_pred HHHHHhHHHhHhhhch--------h-----------h-H---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--
Q 019679 126 LNIISKLDQVNQVIGI--------D-----------L-L---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-- 180 (337)
Q Consensus 126 ~~a~~~l~~l~~~~~~--------~-----------~-~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-- 180 (337)
.-.+.++-.+....++ + . + ...+...+.+...+++...|..++..+..++..++.
T Consensus 391 ~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l 470 (1233)
T KOG1824|consen 391 ADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGAL 470 (1233)
T ss_pred HHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchh
Confidence 9999888877766542 0 0 1 123555555556677778899999999988877633
Q ss_pred hhHHHHHHHHHHHHccccc--hHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679 181 GFFDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 255 (337)
Q Consensus 181 ~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 255 (337)
..+.+.++|.+...+.|.+ ...+..++..+.......+++.+ ...+.|.+.....|+.+.+-.-|+...+.++..
T Consensus 471 ~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkv 550 (1233)
T KOG1824|consen 471 AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKV 550 (1233)
T ss_pred hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHH
Confidence 3456778999999999865 46788888888777777776643 556788888888999888877777777776543
Q ss_pred ---------cChHHHHhhHHHHHHhhc--cCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCCCccHHHH
Q 019679 256 ---------MGSEITCSQLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVRFF 322 (337)
Q Consensus 256 ---------~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr~~ 322 (337)
++...+...++...++.+ +|.+.+||.+|+.+++++...+|... ....++|.+.+=+ ...-.|..
T Consensus 551 irpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~ 628 (1233)
T KOG1824|consen 551 IRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLT 628 (1233)
T ss_pred hcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHH
Confidence 344455666777766666 67778999999999999999988431 1233444444322 23457999
Q ss_pred HHHHHHHHHHh
Q 019679 323 ATQALQSKDQV 333 (337)
Q Consensus 323 a~~al~~l~~~ 333 (337)
|++|+..++..
T Consensus 629 AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 629 AVKALTLIAMS 639 (1233)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.6e-14 Score=120.07 Aligned_cols=295 Identities=15% Similarity=0.206 Sum_probs=234.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~ 75 (337)
|.+-+||..+|+.+-.+++....+.. .+++...+.++..|.+..||.++ +.+..+.+.+..+ ...+.++|.+.
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~ 173 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLR 173 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHH
Confidence 78889999999999999998877654 46899999999999999999876 5555555544332 23567899999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh---HHhhHHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLP 150 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~llp 150 (337)
.-+.+.++.+|...+..+.-+-..-+-+. ....+++.+..+++|++++||..+-..++.+...+..+. -.+.+++
T Consensus 174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~ 253 (675)
T KOG0212|consen 174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMIN 253 (675)
T ss_pred HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchh
Confidence 99999999999999999987765444332 236899999999999999999999999988887775322 1356788
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccch-HHHHHHHHHHHHHHHHhChHH-----H
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW-----A 222 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~-----~ 222 (337)
.+..-.+.+++.++..++.++..+.+..|... +...++..+++++.|+.. .+++.+...-+.+...++.+. .
T Consensus 254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id 333 (675)
T KOG0212|consen 254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEID 333 (675)
T ss_pred hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 88888889999999999999999999988764 445666677777888776 578777766655555544322 2
Q ss_pred HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
...++..+...+.+.....|.+++.++..+-...+.+. ....+++.+++.++|++.+|-..+...++.++..-..
T Consensus 334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 34678888889999999999999999999987777654 3567999999999999999999999999988865443
No 31
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=7.2e-14 Score=130.88 Aligned_cols=327 Identities=16% Similarity=0.145 Sum_probs=235.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELS 78 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~ 78 (337)
..|..|+.++..++.+++..+.+. +.+.++|-+.++-.||+..|+.+....+..+...-. .+.+...++.-+..-+
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999998755 356899999999999999999999988887755311 1234445555555567
Q ss_pred CCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh---hcCCChhHHHHHHHhHHHhHhhh---c-------hhhHH
Q 019679 79 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQVI---G-------IDLLS 145 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~ 145 (337)
.+..|+||+++|-++..+.+..+.+...+.+..++..+ ..|-...||.++=.+...+.+.+ . .....
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l 1128 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL 1128 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH
Confidence 89999999999999999998777666555555554444 44656789988766655554432 1 12344
Q ss_pred hhHHHHHHH-HhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHH------------------
Q 019679 146 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRD------------------ 204 (337)
Q Consensus 146 ~~llp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~------------------ 204 (337)
..++|.+.. ..-++-..+|..++..+..+++..|... +.++++|.+++....-++.|-.
T Consensus 1129 ~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R 1208 (1702)
T KOG0915|consen 1129 DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLR 1208 (1702)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHH
Confidence 678888764 2346778899999999999999998754 6788999998887665544332
Q ss_pred -HHHH------HHHHHHHHhChHHHHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhcc
Q 019679 205 -AAAN------NVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASK 274 (337)
Q Consensus 205 -~a~~------~l~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~ 274 (337)
.+++ +++.....++ ....+.++|.+.+..... .-..|..+...+..++..+|.+ ++..+++..++..+.
T Consensus 1209 ~s~aksspmmeTi~~ci~~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~ 1287 (1702)
T KOG0915|consen 1209 ASAAKSSPMMETINKCINYID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAK 1287 (1702)
T ss_pred HhhhcCCcHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccc
Confidence 1111 1222222222 124667889999988764 3567888999999998888865 567889999999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 275 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 275 d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
|.++.+|++.+.+.+.+++.-.++.....+-..+..++.+.+..- ..++..+..++
T Consensus 1288 dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~Ia 1343 (1702)
T KOG0915|consen 1288 DRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISNIA 1343 (1702)
T ss_pred cccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHHHH
Confidence 999999999999999999988877665555555555555544322 44444444333
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.66 E-value=1e-12 Score=120.54 Aligned_cols=299 Identities=14% Similarity=0.068 Sum_probs=187.0
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 107 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 107 (337)
...+++.+.+++..++.++|+.....+..+++..+... -..+..+.+-++|+|+.+|-.|++.++.+.. ....+
T Consensus 66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e 139 (746)
T PTZ00429 66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLE 139 (746)
T ss_pred chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHH
Confidence 36788888899999999999999888888776543322 2346677778889999999999999888775 34557
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh-HHHH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDK 186 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~ 186 (337)
.+++.+.+.+.|.++.||+.|+-++..+.+..+.......+++.+.+++.|+++.|...++..+..+.+..+... ....
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~ 219 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNE 219 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHH
Confidence 788888889999999999999999988876543221224577888888899999999888888888765432211 1122
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH---h
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---S 263 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~---~ 263 (337)
.+.-+.+.+.+-+.+-+-..+..+...... .+.-...++..+...+++.+..|-..++.++-.+......+... .
T Consensus 220 ~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~ 297 (746)
T PTZ00429 220 WVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV 297 (746)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 333334444444444444444444321100 01112345555555566666666666666666655443322111 1
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--------------------------------HHHHHhhhHHHHhh
Q 019679 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--------------------------------SVVEKSIRPCLVEL 311 (337)
Q Consensus 264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------------------------------~~~~~~i~~~l~~l 311 (337)
.+.+.+..+ ....+++|..+.+.+..+...... +.....++.-|.+.
T Consensus 298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eY 376 (746)
T PTZ00429 298 RVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEY 376 (746)
T ss_pred HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 122333333 233455666555555544432210 11124456666677
Q ss_pred hCCCCccHHHHHHHHHHHHHHhhh
Q 019679 312 SEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 312 ~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
..|.+.+++..++++++.++..+.
T Consensus 377 a~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 377 ASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCh
Confidence 778888999999999999987654
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=2.3e-12 Score=118.32 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=195.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+..+|+.+--.+..+++.-+... --.++.+.+-+.|+|+.+|..|+.+++.+ ....+.+.+++.+++.+.|+++
T Consensus 81 d~elKKLvYLYL~~ya~~~pela--lLaINtl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~p 154 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDP 154 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCH
Confidence 45566666666655543211111 12478888999999999999999988854 3345667888999999999999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh-------------------h-
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-------------------L- 143 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------------------~- 143 (337)
.||++|+-++.++....++......+++.+.+++.|+++.|..+|+.++..+.+..+.. .
T Consensus 155 YVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW 234 (746)
T PTZ00429 155 YVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEW 234 (746)
T ss_pred HHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChH
Confidence 99999999999988766643334567888999999999999999999888776432100 0
Q ss_pred ------------------HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH---HHHHHHHHHHccccchHH
Q 019679 144 ------------------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSI 202 (337)
Q Consensus 144 ------------------~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~v 202 (337)
-...++..+...+++.+..|..+++.++-.+.....++... ..+.+.++.+ ...++++
T Consensus 235 ~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~ei 313 (746)
T PTZ00429 235 GQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAET 313 (746)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccH
Confidence 01124444455556677777777777766665543322211 1233444444 4566788
Q ss_pred HHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHH
Q 019679 203 RDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 282 (337)
Q Consensus 203 r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 282 (337)
|..+++.+..+.... +..+.. -+..+.-..+|+.+ +|...+..+..++..-+- ..++.-+..+..|.+.+++.
T Consensus 314 qyvaLr~I~~i~~~~-P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv----~~IL~EL~eYa~d~D~ef~r 386 (746)
T PTZ00429 314 QYIVCKNIHALLVIF-PNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVA----PEILKELAEYASGVDMVFVV 386 (746)
T ss_pred HHHHHHHHHHHHHHC-HHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCcccH----HHHHHHHHHHhhcCCHHHHH
Confidence 999998888777654 332222 23444444566664 788888888887654332 34556666777788888889
Q ss_pred HHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCC
Q 019679 283 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 314 (337)
Q Consensus 283 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d 314 (337)
.++++++.++..+.. ..+.++..|..++.+
T Consensus 387 ~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 387 EVVRAIASLAIKVDS--VAPDCANLLLQIVDR 416 (746)
T ss_pred HHHHHHHHHHHhChH--HHHHHHHHHHHHhcC
Confidence 999999998876653 335566666665554
No 34
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.61 E-value=1.3e-12 Score=117.54 Aligned_cols=331 Identities=16% Similarity=0.140 Sum_probs=224.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhc---
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELS--- 78 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~--- 78 (337)
.-||+.++.+++.++...+.+.. .++...+...+. ..++..-+.-+.+++.++...+.. .+...++|.+.+.+
T Consensus 188 ~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence 35788888888888877776664 445555444443 344555556667777777665543 34556778877777
Q ss_pred CCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhh----------------------------------cCCCh
Q 019679 79 SDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLL----------------------------------KDEFP 122 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l----------------------------------~d~~~ 122 (337)
+..+...|+.++++++.+...++.+... ..++..+.+.+ .|-++
T Consensus 267 e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SW 346 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSW 346 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhH
Confidence 6667788899999888888777765432 44555555544 11236
Q ss_pred hHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh----------------h---
Q 019679 123 DVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------------G--- 181 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----------------~--- 181 (337)
.||++|++++..+...-.+ ..+.+.+-|.+...+++....||.-+++.+..+....+. .
T Consensus 347 kVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~ 426 (1233)
T KOG1824|consen 347 KVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDL 426 (1233)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccch
Confidence 6899999988877654221 223456667777777888888888777766655443211 1
Q ss_pred hHH----HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhc
Q 019679 182 FFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLA 253 (337)
Q Consensus 182 ~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~ 253 (337)
... +.++..+-.-+++.+..-|..++..|..+...+.. ......++|-+...++|.+ ...+..++.++....
T Consensus 427 ~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L 506 (1233)
T KOG1824|consen 427 SMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSAL 506 (1233)
T ss_pred HHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHH
Confidence 011 22334444445555555677777777777766532 2235568899999998865 678888888888887
Q ss_pred cccChHHHHhh---HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH----------HHHHHhhhHHHHhh-hCCCCccH
Q 019679 254 PVMGSEITCSQ---LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----------SVVEKSIRPCLVEL-SEDPDVDV 319 (337)
Q Consensus 254 ~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------~~~~~~i~~~l~~l-~~d~~~~v 319 (337)
...+++.|.++ +.|.+.....|+.+.+-..|......+.+.+.+ +++...+.-.+..+ .+|.|.+|
T Consensus 507 ~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeV 586 (1233)
T KOG1824|consen 507 ISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEV 586 (1233)
T ss_pred hcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHH
Confidence 77888877654 688889999999999999999999998877643 23333333334443 57899999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 019679 320 RFFATQALQSKDQVMMS 336 (337)
Q Consensus 320 r~~a~~al~~l~~~~~~ 336 (337)
|..|+.+++.+...|||
T Consensus 587 keraIscmgq~i~~fgD 603 (1233)
T KOG1824|consen 587 KERAISCMGQIIANFGD 603 (1233)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999986
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.52 E-value=1e-10 Score=104.65 Aligned_cols=302 Identities=17% Similarity=0.159 Sum_probs=217.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh---hHHhh
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQ 108 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ 108 (337)
.+.+..++++.+.+.-..++..|..+.+...+........+.+...+.++++.||..+++.++.+...-... .....
T Consensus 40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 40 EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 344777787777777788889999999988888777888999999999999999999999999987644321 12367
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch-h-hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---H
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---F 183 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~ 183 (337)
+++.+..++.|++..|...|++.+..+++.-.. + .+.+...+.+.++....+..+|..+.+.+..++..-.... .
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999999999875322 1 1223447888888877788889888898888865532211 1
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh-ChHHH-HhhHHHHHHHhhcCcc--h---HHH-HHHHHHHHHhccc
Q 019679 184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDWA-MQHIVPQVLEMINNPH--Y---LYR-MTILQAISLLAPV 255 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~l~~~l~~~~~~~~--~---~vR-~~~~~~l~~l~~~ 255 (337)
...+++.++..+++++.-|+..++..+..++..- |.+++ ...+++.+.+.+.+.. + ... ...+.+++.++..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 2238888889999999999999999999998733 22333 3357888888876432 1 112 2344666666654
Q ss_pred cChHH--HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH--------HhhhHHHHhhhCCCCccHHHHHHH
Q 019679 256 MGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--------KSIRPCLVELSEDPDVDVRFFATQ 325 (337)
Q Consensus 256 ~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~--------~~i~~~l~~l~~d~~~~vr~~a~~ 325 (337)
-.... ..+.++..+..++...++..+..|+.++|.++......... ..++..+-........++|..+..
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 22222 23466777778888899999999999999999765443222 223333333444566789999999
Q ss_pred HHHHHHHh
Q 019679 326 ALQSKDQV 333 (337)
Q Consensus 326 al~~l~~~ 333 (337)
+++.+...
T Consensus 360 al~~il~~ 367 (503)
T PF10508_consen 360 ALASILTS 367 (503)
T ss_pred HHHHHHhc
Confidence 99888543
No 36
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.49 E-value=3.1e-11 Score=103.47 Aligned_cols=184 Identities=24% Similarity=0.318 Sum_probs=93.0
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
..+.+.+.+.|+++.+|..++..++.+.. ...+|.+..++.|.++.||..+..+++.+.. +..+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~ 107 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEAV 107 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHH
Confidence 45555555555566666666655444433 2344555556666666666666665555553 2233
Q ss_pred HHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC------------CchHHHHHHHHHhhHhHhh
Q 019679 111 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------------RHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 111 ~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d------------~~~~vr~~~~~~l~~l~~~ 177 (337)
|.+.+++. |.+..||..+..+++.+...-. ++.+....+| ..+.+|..++..++.+..
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~- 178 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDERA--------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD- 178 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-
Confidence 44444444 5556666666666665555321 1112222222 123455555555544422
Q ss_pred hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL 252 (337)
Q Consensus 178 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l 252 (337)
+...+.+.+.+.|+...||..+..+++.+.... ..+.+.+...+.+++|.+|..++..++.+
T Consensus 179 -------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 179 -------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred -------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 224445555556666666666666665544321 23445555555666666666665555553
No 37
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.1e-11 Score=104.98 Aligned_cols=243 Identities=17% Similarity=0.134 Sum_probs=168.0
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhh-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 156 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~ 156 (337)
.++.+...|..+......++..-.... ..+.+..-+..+..|.++.||..|+.++-.+.+.+ .+.+.+.....+..
T Consensus 167 ~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~l 243 (823)
T KOG2259|consen 167 SSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHL 243 (823)
T ss_pred hhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHh
Confidence 344555666666665555553222111 22455555778888888888888888888887732 23355667777788
Q ss_pred cCCchHHHHHHHHHhhHhHhhhC-h-------hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHH-
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLG-V-------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV- 227 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~-~-------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~- 227 (337)
.|.+..||.++++.+..+++... + ....+....-+-..+.|-++.||-.|++.+|.+.+.. .+.+.+.+-
T Consensus 244 sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdK 322 (823)
T KOG2259|consen 244 SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDK 322 (823)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHH
Confidence 88888888888888888877761 1 1123344445556778888888888888888776542 221111111
Q ss_pred -----------------------------------------------------HHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679 228 -----------------------------------------------------PQVLEMINNPHYLYRMTILQAISLLAP 254 (337)
Q Consensus 228 -----------------------------------------------------~~l~~~~~~~~~~vR~~~~~~l~~l~~ 254 (337)
..++.-+.|..+.||.+|+.+++.++.
T Consensus 323 Klms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ 402 (823)
T KOG2259|consen 323 KLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT 402 (823)
T ss_pred HHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc
Confidence 123333445567899999999999985
Q ss_pred ccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679 255 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329 (337)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 329 (337)
.- ..|...-+.++..+++|+...||..|+.+|..|+.++. +.+..++.+...+.|.+++||...-..|..
T Consensus 403 ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 403 SS--PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred CC--CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 43 33667888999999999999999999999999998854 446777888888899999999877666543
No 38
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.3e-11 Score=113.58 Aligned_cols=333 Identities=17% Similarity=0.182 Sum_probs=204.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhh---H
Q 019679 1 MDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV---K 75 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l---~ 75 (337)
+||+..|+.+....++.+.+.-.. +...++++..+...+.+..|.||++++.+|..+...-+.+.+.+.+..+. .
T Consensus 1008 yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~f 1087 (1702)
T KOG0915|consen 1008 YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAF 1087 (1702)
T ss_pred cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 588999999999988888764332 33456788888888888999999999999999888766665555444333 3
Q ss_pred HhcCCCcHHHHHHHHH---HHHhcCcccC-------hhhHHhhhHHHHHHh-hcCCChhHHHHHHHhHHHhHhhhchh--
Q 019679 76 ELSSDSSQHVRSALAT---VIMGMAPILG-------KDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGID-- 142 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~---~l~~l~~~~~-------~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~-- 142 (337)
....|-...||.++-. .+++++-..+ .....+.++|.++.- +...-++||+.++..+-.+.+..|..
T Consensus 1088 RvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1088 RVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 3445666677776533 3333332111 112335566665542 23566778888877777777665431
Q ss_pred h---------------------------------------------------------------HHhhHHHHHHHHhcC-
Q 019679 143 L---------------------------------------------------------------LSQSLLPAIVELAED- 158 (337)
Q Consensus 143 ~---------------------------------------------------------------~~~~llp~l~~~~~d- 158 (337)
. ....++|.+.++...
T Consensus 1168 P~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred chhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 0 112344444444432
Q ss_pred CchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC
Q 019679 159 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236 (337)
Q Consensus 159 ~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 236 (337)
-.-..|.+++..+..++..+|.+. +..+++..++..++|.+..+|.+.+.+++.+.+.-.++....-+-..+...+.+
T Consensus 1248 Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1248 VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence 223457778888888888887653 667899999999999999999999999999998776654433333344444444
Q ss_pred cchHHHHHHHHHHHHhccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh-hcH-H-HHHHhhhHHHHhh
Q 019679 237 PHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQ-S-VVEKSIRPCLVEL 311 (337)
Q Consensus 237 ~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~-~~~-~-~~~~~i~~~l~~l 311 (337)
.+.. +..++..+..++.+... +.+.+.++|.++-..++...+...-=-+.+..+... .|. + +..+.+.+...+.
T Consensus 1328 ~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni 1406 (1702)
T KOG0915|consen 1328 DESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENI 1406 (1702)
T ss_pred CCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHh
Confidence 3321 12333333334433221 224567888887666655221111111222222211 111 1 3345666666677
Q ss_pred hCCCCccHHHHHHHHHHHHHHhh
Q 019679 312 SEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 312 ~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
.++..|.+|..+++++..++.-.
T Consensus 1407 ~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1407 TNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred ccchHHHHHHHHHHHHHHHcccc
Confidence 88888999999999998876544
No 39
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.48 E-value=1.6e-10 Score=99.30 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=231.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 78 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~ 78 (337)
|++|.+-.++..++.-++...|.....+ ++.++.+-+..+++.-|++++.+++.+.+.-... .+.+..+|.+....
T Consensus 339 ~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m 417 (858)
T COG5215 339 GDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM 417 (858)
T ss_pred ccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence 6789999999999999998888877544 8999999999999999999999999987764444 24566788888888
Q ss_pred CCCcHHHHHHHHHHHHhcCcccChhhHH-hhhHHHHHHhh---cCCChhHHHHHHHhHHHhHhhhchhh------H---H
Q 019679 79 SDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDL------L---S 145 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~------~---~ 145 (337)
+|+.--|+..+++++|.++.....-... .++.+.....+ .| .|.+-.++......++.++.+-. + .
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY 496 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFY 496 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHH
Confidence 9999999999999999999766533322 34444444443 33 46677777777777777665321 1 1
Q ss_pred hhHHHHHHHH--hcCCchHHHHHHHHHhhHhHhhhChhh------HHHH-------HHHHHHHHc--cc--cchHHHHHH
Q 019679 146 QSLLPAIVEL--AEDRHWRVRLAIIEYIPLLASQLGVGF------FDDK-------LGALCMQWL--KD--KVYSIRDAA 206 (337)
Q Consensus 146 ~~llp~l~~~--~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~-------l~~~l~~~l--~d--~~~~vr~~a 206 (337)
..++..+... ..+.+...|.+..+.++.++..++... +.+. -+.+.-+.+ +| ...++...-
T Consensus 497 ~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~ 576 (858)
T COG5215 497 LAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNY 576 (858)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 2233333222 135667799999999999988775431 1111 111111111 12 123556666
Q ss_pred HHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHH
Q 019679 207 ANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIK 281 (337)
Q Consensus 207 ~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr 281 (337)
+..|..+....++ +...+.++..+...+...+ ..+-.-...+++.++..+++. .+.+.+.|++.+.++..+..|-
T Consensus 577 ~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~ 656 (858)
T COG5215 577 IGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVL 656 (858)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHH
Confidence 6777777777766 4456678888888887653 334444567788888777754 4678899999999999999999
Q ss_pred HHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHHhhhC
Q 019679 282 FNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 282 ~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~~~~~ 336 (337)
..++...+.++..+|.+ .+.+-++.-|..++..+ +.+++-.....++.++...|.
T Consensus 657 ~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 657 NSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 99999999999999876 33455666666655443 345666667777777776653
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=1.8e-10 Score=103.17 Aligned_cols=323 Identities=17% Similarity=0.173 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHH
Q 019679 9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHV 85 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~v 85 (337)
..+++.|..+.....+....+.+.+.+...+.++++.||..++..++.++..-... .....+++.+..++.|++..|
T Consensus 56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V 135 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV 135 (503)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence 34566777777766666556789999999999999999999999999887653221 123558899999999999999
Q ss_pred HHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHHHhcCC
Q 019679 86 RSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDR 159 (337)
Q Consensus 86 r~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~d~ 159 (337)
...|++++..++..-... .....+.+.+..++..+++.+|..+...+..+++.- ++. ....+++.+...++++
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~d 214 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSD 214 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCc
Confidence 999999999998744321 112344788888888878999998888888876542 222 1234788888888889
Q ss_pred chHHHHHHHHHhhHhHhhhChhhH--HHHHHHHHHHHccc----c-chHHH-HHHHHHHHHHHHHhChHHH---HhhHHH
Q 019679 160 HWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKD----K-VYSIR-DAAANNVKRLAEEFGPDWA---MQHIVP 228 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d----~-~~~vr-~~a~~~l~~~~~~~~~~~~---~~~l~~ 228 (337)
+.-+|..+++.+..++..-....+ ...+++.+.+.+.+ + ...+. -..++.++.++.. ++..+ .+.++.
T Consensus 215 DiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 215 DILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLE 293 (503)
T ss_pred cHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 999999999999999984422222 12355555555543 3 22222 2333555555543 23222 245666
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHhccccChHHHH--------hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---
Q 019679 229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITC--------SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 297 (337)
Q Consensus 229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~--------~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--- 297 (337)
.+.+++.+.+...+..|+.++|.++....+.... .+++..+.........++|.++.++++.+...-..
T Consensus 294 ~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~ 373 (503)
T PF10508_consen 294 RLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD 373 (503)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch
Confidence 6677777888999999999999998655433222 34556666666777789999999999999533221
Q ss_pred H--------HHH---HhhhH-HHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 298 S--------VVE---KSIRP-CLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 298 ~--------~~~---~~i~~-~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
+ .|. ..-.. .+..+++.|=+++|..+.+.+..++..
T Consensus 374 ~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 374 NDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 1 110 11111 555566666689999999998887653
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.46 E-value=4.7e-11 Score=102.37 Aligned_cols=267 Identities=24% Similarity=0.279 Sum_probs=197.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-C
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-D 80 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d 80 (337)
|+++.+|..++..++.+. ..+.+|.+...+.|+++.||..++.+|+.+... ..+|.+.++++ |
T Consensus 54 ~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--------~a~~~li~~l~~d 117 (335)
T COG1413 54 DEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP--------EAVPPLVELLEND 117 (335)
T ss_pred CCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------hHHHHHHHHHHcC
Confidence 567899999999977766 478999999999999999999999987766432 22333444444 8
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCCh------------hHHHHHHHhHHHhHhhhchhhHHhhH
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP------------DVRLNIISKLDQVNQVIGIDLLSQSL 148 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~------------~vr~~a~~~l~~l~~~~~~~~~~~~l 148 (337)
+++.||..+..+++.+.. ..-+..+.+.+.|... .+|..++..++.+.. +..
T Consensus 118 ~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~ 181 (335)
T COG1413 118 ENEGVRAAAARALGKLGD--------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD--------PEA 181 (335)
T ss_pred CcHhHHHHHHHHHHhcCc--------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhh
Confidence 999999999999999986 2225667777777662 466666666666643 788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679 149 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 228 (337)
Q Consensus 149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 228 (337)
.+.+...+.+....+|..++..++.+.... ..+.+.+...+.|+++.||..++..++.+.. + ...+
T Consensus 182 ~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----~----~~~~ 247 (335)
T COG1413 182 IPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD----E----EAVD 247 (335)
T ss_pred hHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----c----hhHH
Confidence 999999999999999999999988876543 3577888899999999999999999986532 2 3556
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHH
Q 019679 229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL 308 (337)
Q Consensus 229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l 308 (337)
.+...+.+.++.++.......+. .....-.+.+...+.|....+|..+...++.+.... ....+
T Consensus 248 ~l~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~a~ 311 (335)
T COG1413 248 ALAKALEDEDVILALLAAAALGA--------LDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEK--------AVAAL 311 (335)
T ss_pred HHHHHHhccchHHHHHHHHHhcc--------cCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--------hHHHH
Confidence 66777788888887776555541 112344556667778888999999999998886533 33334
Q ss_pred HhhhCCCCccHHHHHHHHHHHH
Q 019679 309 VELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 309 ~~l~~d~~~~vr~~a~~al~~l 330 (337)
.....+.+..+|..+..+...+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 312 LLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred HHHhcCCchhhHHHHHHHHHhh
Confidence 4566677777887777666543
No 42
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.44 E-value=8.6e-11 Score=101.19 Aligned_cols=240 Identities=14% Similarity=0.036 Sum_probs=170.6
Q ss_pred hHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679 31 VVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109 (337)
Q Consensus 31 l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 109 (337)
.++.+...+ .|++++++..++..+..... ...+..+.+.+.|.++.||..++++|+.+.. ...
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence 466677777 57778888877666653311 1125666778889999999999999998774 456
Q ss_pred HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 189 (337)
Q Consensus 110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 189 (337)
.+.+..++.+.++.||..++.+++.... .-.+.+...++|+++.||..++..++.+... ...|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRR--------LSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--------cchH
Confidence 6888888899999999998877776322 1235566777899999999999999887532 2445
Q ss_pred HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679 190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 269 (337)
Q Consensus 190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 269 (337)
.+...+.|.++.||.+|+.+++.+. .. .-++.+..+..++.+.++..+...+... +. +..++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAG----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcC----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 5667799999999999999997653 22 2334555545555555554444444332 22 2677888
Q ss_pred HhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 270 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
..++.|+. +|..++.+++.+.. ....+.|...++|.. ++..|.+++..+.
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 88888865 99999999998865 456666667776644 8999999988764
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.7e-12 Score=101.27 Aligned_cols=328 Identities=16% Similarity=0.149 Sum_probs=229.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccc---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhcC
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSS 79 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~~ 79 (337)
+.+...++.++|.++-..+.....- -+-|.+.+.+.| ..+||..++.++..++..-..+. -..--+..+.++.+
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLak 177 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAK 177 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcc
Confidence 3455566677777666555443222 344567777755 66788888888888877633321 11223444555889
Q ss_pred CCcHHHHHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 80 DSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
.++.+||..+..++.++....... .....-+|.+.++++..+++||..+..+++.++-.-..... .+.++|.+.
T Consensus 178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV 257 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence 999999999999999988644322 12245579999999999999999999999988755332221 256899999
Q ss_pred HHhcCCchHHHHHHHHHhhHhHhhh--ChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--HhhHHHH
Q 019679 154 ELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQ 229 (337)
Q Consensus 154 ~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~ 229 (337)
++..|.+.+++..+...+..++.-- ..+.....-+|.+++++.++.-..--+.+-++..++..-+++.. -..++..
T Consensus 258 ~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~p 337 (550)
T KOG4224|consen 258 DLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRP 337 (550)
T ss_pred HHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhH
Confidence 9999999999999998888887532 22223334578889999888776666667777666554333321 2345566
Q ss_pred HHHhhcCc-chHHHHHHHHHHHHhccccC---hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh--hcHHHHHHh
Q 019679 230 VLEMINNP-HYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI--VDQSVVEKS 303 (337)
Q Consensus 230 l~~~~~~~-~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~ 303 (337)
++.++.-. +...+..|...+-.++.... ...+...-+|.+..++.|..-+||.....++.+++-. ........-
T Consensus 338 LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~g 417 (550)
T KOG4224|consen 338 LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSG 417 (550)
T ss_pred HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcC
Confidence 66666543 45588888888888865332 2334456788999999999899999888888887632 222234456
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
++|.|..+..|.+.+||..++.||..+.+-
T Consensus 418 i~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 418 IIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred CcceeecccCccchhhcccHHHHHHhhhhh
Confidence 889999999999999999999999988654
No 44
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.42 E-value=6.3e-12 Score=110.49 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=209.8
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC
Q 019679 80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 159 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~ 159 (337)
=.+..-|......|....+.++++.....++|++...+.-.+ --...+.-+-.+++....+.+...++|.+.++....
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 345556667777777777777778888888898888765322 111222333444455555557788999999999999
Q ss_pred chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679 160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 239 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 239 (337)
+..+|...++.+..++..+.++...+++.|.+...+.|+++.+|+.+++++..++..++.......++..+...-.|.+.
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~ 422 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG 422 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999998876667788888888888899
Q ss_pred HHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccH
Q 019679 240 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDV 319 (337)
Q Consensus 240 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~v 319 (337)
..|....-+++.+++..........+.-.+...+.|+...-|.++...+....+.+..+....+++|-+..+.-|++..|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 99999999999999887665433344455566799999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 019679 320 RFFATQALQSKDQVMM 335 (337)
Q Consensus 320 r~~a~~al~~l~~~~~ 335 (337)
|..|-+++..+.....
T Consensus 503 r~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhHHHHHHHHHHhhhh
Confidence 9999999988776543
No 45
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.41 E-value=8.1e-11 Score=101.06 Aligned_cols=292 Identities=14% Similarity=0.091 Sum_probs=209.0
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 107 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 107 (337)
..++.|++-.++.|.-+.|...++..+..++...-..+..+..+..++.+++.+....|-+|+..+..++...+... .
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~ 339 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--S 339 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--e
Confidence 34688999999999888899999998888877653444556677888888999999999999999999987665322 1
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 187 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 187 (337)
.--+-+..++.|.+..+-..|+.+|-.- |.+.-...++..+..+..|-+...+..++.++..++..++.+. .-+
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~ 413 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKT----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSY 413 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHc----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHH
Confidence 1224566778888877777666655433 3333346677777788888777788888888888888876543 224
Q ss_pred HHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679 188 GALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL 266 (337)
Q Consensus 188 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 266 (337)
+..+...|. ....+-+..++.++..+.+.. ++ ..+..+..+++++.|-.++ +-+++.++.+++-..........+
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~-p~-skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMEND-PD-SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhC-ch-HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHH
Confidence 555554444 455688899999999988865 33 3567888899999986643 234555666654333222222333
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
-++.+.+-=++.-||.+|+++|..++-........+.+..+|.++++|.|.+||..|.-++..+-
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 34444444456789999999999998777766667889999999999999999999988887654
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.41 E-value=1.4e-11 Score=99.30 Aligned_cols=304 Identities=16% Similarity=0.086 Sum_probs=214.6
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---h
Q 019679 30 DVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---K 102 (337)
Q Consensus 30 ~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~ 102 (337)
-.+|-+.+++ +.+..-..-.|+.+|..+++...... +....+|.+.+++.+++..||..+.++||+++.-.. +
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 4789999999 44556667788899999988765542 223468999999999999999999999999985322 1
Q ss_pred hhHHhhhHHHHHHhhcCCCh--hHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679 103 DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
....-..+..++.++..+.. .+-+.+--.|..++..-.+. ......+|.+.+++-..++.+-.-++-+++.++..
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 11122345666677666555 44556677777776643321 23467899999999888888887777888777654
Q ss_pred hChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679 178 LGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISL 251 (337)
Q Consensus 178 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~ 251 (337)
.... ....-+.+.++++|..++..|..-+++++|.+...-+.+. +.-..++.+..+++++...+|..+++.++.
T Consensus 274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 3221 1112244668899999999999999999999876443221 123467888888999989999999999999
Q ss_pred hccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--H---H-HHHhhhHHHHhhhCCCCccHHHH
Q 019679 252 LAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--S---V-VEKSIRPCLVELSEDPDVDVRFF 322 (337)
Q Consensus 252 l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~---~-~~~~i~~~l~~l~~d~~~~vr~~ 322 (337)
+...... ......++|.+..++..-...+|+.|+.++.......-+ + + ..+-++..|..+++-.+..+-..
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhh
Confidence 8543322 223446899999999999999999999999988654321 1 1 12346666777777666666667
Q ss_pred HHHHHHHHHHh
Q 019679 323 ATQALQSKDQV 333 (337)
Q Consensus 323 a~~al~~l~~~ 333 (337)
+..++..+...
T Consensus 434 ~LD~~eniLk~ 444 (526)
T COG5064 434 ALDAIENILKV 444 (526)
T ss_pred hHHHHHHHHhh
Confidence 77777766543
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.40 E-value=7.2e-11 Score=95.41 Aligned_cols=143 Identities=18% Similarity=0.251 Sum_probs=57.2
Q ss_pred HHHHHccccchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhH-H
Q 019679 190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL-L 266 (337)
Q Consensus 190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l-~ 266 (337)
.+...+.|....|-..|+.++..++..+|... +.+.++|.+...+.+.+..+|..+..++..+.+..+ +...+ .
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~ 133 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILL 133 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHH
Confidence 33344444444444444555555444443321 233444445555554444455555555555444433 01122 4
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhhc---H----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIVD---Q----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+.+.....++++.+|..++..+..+....+ . ......+.+.+..++.|++++||..|.+++..+.++++
T Consensus 134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 444444455555555555555544444444 0 01123444444445555555555555555555544443
No 48
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.40 E-value=3.3e-11 Score=97.16 Aligned_cols=302 Identities=13% Similarity=0.099 Sum_probs=211.9
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHh--hCH-HH-HHHhhhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccChhh-
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI--LNP-EL-AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA- 104 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~--~~~-~~-~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~- 104 (337)
=+|.+.+.+.+.+-+-...+..-+.++.+. .+| +. +..-++|.+.+++ +......+-.|++++.+++.--..+-
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 357777777777777777777666655442 111 12 2334778888877 55556777899999999986443221
Q ss_pred --HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--hh-HHhhHHHHHHHHhcCCch--HHHHHHHHHhhHhHhh
Q 019679 105 --TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DL-LSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQ 177 (337)
Q Consensus 105 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~llp~l~~~~~d~~~--~vr~~~~~~l~~l~~~ 177 (337)
....-+|.+.+++.+.+.+||..++-+|+.++..... +. +.-..+..+..++.++.. ..-..+--.++.++..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 2246789999999999999999999999999765321 11 111233334444433322 3334445667777765
Q ss_pred hChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679 178 LGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISL 251 (337)
Q Consensus 178 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~ 251 (337)
..+. ....+.+|++.+++...+++|-..|+-+++.++..-... .+-..+.+.+++++.+++..+...+++.+|.
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 5332 245689999999999999999999999999987643111 1123456789999999998888889999999
Q ss_pred hccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679 252 LAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQ 325 (337)
Q Consensus 252 l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~ 325 (337)
+...-... ...-..++.+..+|+.+...+|+.++.+++.+...-..+ .+...+.|.|..++...+..++.-||+
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 87654322 123357888889999999999999999999995422221 345678899999988888999999999
Q ss_pred HHHHHHH
Q 019679 326 ALQSKDQ 332 (337)
Q Consensus 326 al~~l~~ 332 (337)
|+....+
T Consensus 392 AisNats 398 (526)
T COG5064 392 AISNATS 398 (526)
T ss_pred HHHhhhc
Confidence 9987654
No 49
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.6e-11 Score=97.16 Aligned_cols=329 Identities=17% Similarity=0.168 Sum_probs=221.3
Q ss_pred CChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--CHHHHHHhhhHhhHHhc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELS 78 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~--~~~~~~~~ll~~l~~l~ 78 (337)
+.-.||..++.++..+++.-... ....--+..+.++-+.++..+|..+..+|..+-..- ....+..--+|.+..++
T Consensus 138 d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll 217 (550)
T KOG4224|consen 138 DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL 217 (550)
T ss_pred CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence 34456667777777777652221 122334555667888899999999998888764321 11122233689999999
Q ss_pred CCCcHHHHHHHHHHHHhcCcccCh-hh---HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hhhHHhhHHHHH
Q 019679 79 SDSSQHVRSALATVIMGMAPILGK-DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAI 152 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~llp~l 152 (337)
...++.||..++.++++++-.--. .. ....++|.+..++.|.++.|+..|-.++..++.... .+.....-+|.+
T Consensus 218 ~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~l 297 (550)
T KOG4224|consen 218 KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLL 297 (550)
T ss_pred ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHH
Confidence 999999999999999998842211 11 124599999999999999999999999999987543 233344578999
Q ss_pred HHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChH---HHHhhH
Q 019679 153 VELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPD---WAMQHI 226 (337)
Q Consensus 153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l 226 (337)
.++++++....-.+.+.++..++-.-+.+. ...-++..++.+|.- ++.+++..|...+..++...... .....-
T Consensus 298 v~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA 377 (550)
T KOG4224|consen 298 VELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA 377 (550)
T ss_pred HHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc
Confidence 999998887777777777766665544332 122355667777765 44568999999999887654321 223467
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHh--ccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH-H---
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLL--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-V--- 300 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~-~--- 300 (337)
+|.+.+++.|....+|...-.++..+ ............++|.+..+..+.+.+||-+++.+|..+.+....-. +
T Consensus 378 i~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 378 IPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred hHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 89999999998766665554455555 44444444556799999999999999999999999999976543210 0
Q ss_pred ----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 301 ----EKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 301 ----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
.+-+...|..+.......+|-.+.+.+..+.
T Consensus 458 wd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 458 WDHPVQGIQGRLARFLASHELTFRHIARWTIQQLL 492 (550)
T ss_pred hcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0223333444444444445555555554443
No 50
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=108.75 Aligned_cols=258 Identities=13% Similarity=0.194 Sum_probs=214.8
Q ss_pred HhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh
Q 019679 37 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 116 (337)
Q Consensus 37 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 116 (337)
.-+.-.+.+-|..-...|....+.++.+.....++|.+...+.-.+ --...+..+-.++..+..+.+...++|.+.++
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kL 338 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKL 338 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHH
Confidence 3444566777888888888888888888888889998876654433 11223333334455444455667899999999
Q ss_pred hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcc
Q 019679 117 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK 196 (337)
Q Consensus 117 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 196 (337)
++..+..+|...++.+..+...+.++.+.+.++|.+...+.|.+..+|...+.++..++..+++.....+++..+..+-.
T Consensus 339 F~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 339 FKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP 418 (690)
T ss_pred hcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999998888
Q ss_pred ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCC
Q 019679 197 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR 276 (337)
Q Consensus 197 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 276 (337)
|+...+|.....+++.++..+.+......+...+...+.|+...-|.+++..+....+++........++|.+..+..|+
T Consensus 419 d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~ 498 (690)
T KOG1243|consen 419 DEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDP 498 (690)
T ss_pred cccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCc
Confidence 99999999999999999887755543334555666678899999999999999999999988888899999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhhc
Q 019679 277 VPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 277 ~~~vr~~a~~~l~~i~~~~~ 296 (337)
+..||..+.+++...-..+.
T Consensus 499 e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 499 EKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred ccchhhHHHHHHHHHHhhhh
Confidence 99999999999888866554
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.38 E-value=8.1e-11 Score=95.09 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=129.6
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH-------hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.+...+.+--.+.+++.|..++..+..++..-...... ..+++.+...+.|....+-..++.++..++..++.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444445677888888888887777654111111 22335555666777778888899999999998876
Q ss_pred hh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-
Q 019679 181 GF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG- 257 (337)
Q Consensus 181 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~- 257 (337)
.. +.+.++|.++..+.|++..+|+.|..+|..+.+..+.. ...+.+.+....+++++.+|..++.++..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 53 56789999999999999999999999999999877511 12237888888999999999999999999987777
Q ss_pred -hH-----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679 258 -SE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 258 -~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
.. ...+.+.+.+..++.|.+++||.+|-+++..+.+.+|..
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 123678999999999999999999999999999998875
No 52
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=5.8e-11 Score=103.34 Aligned_cols=252 Identities=15% Similarity=0.170 Sum_probs=172.9
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC-------
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG------- 101 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~------- 101 (337)
+.+..-+..+..|.+..||..|++++..+.+.+. ..+.+.....+++.|.+..||.+|++.+.-.++..+
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3466668888999999999999999999888432 223455667778999999999999999887776652
Q ss_pred -hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHh---hHhHhh
Q 019679 102 -KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI---PLLASQ 177 (337)
Q Consensus 102 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l---~~l~~~ 177 (337)
+....+....-+++.++|-+..||-.|++.+|.+.+.- .+.+.+.+=..+.. .+..|+..+..-..+ +.++..
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKKlms--~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKKLMS--RLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHHHhh--hhhhhhhcccchHHHHhcCCcccC
Confidence 11234667778888999999999999999999887652 22221211111111 111111111111111 111100
Q ss_pred ------hChhhH--------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHH
Q 019679 178 ------LGVGFF--------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRM 243 (337)
Q Consensus 178 ------~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~ 243 (337)
.+.+.. ..-....+...++|+..+||.+|+.++..++..- +. +...-+..+.++++|.-..||.
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~-FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PG-FAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhccHHHHHHH
Confidence 000000 0112245677899999999999999999998753 23 3456788999999999999999
Q ss_pred HHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 244 TILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 244 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
.++.++..++..+ ...+..++.++..+.|.+..||.+.-..|+..
T Consensus 429 ~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHL---AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999988653 24567889999999999999999887776654
No 53
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.33 E-value=6.8e-10 Score=95.70 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=160.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
.+..+.+.+.|.++.||..++..|+.+.. ....+.+..+++++++.||..++.+++.... .-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChH
Confidence 38888999999999999999999996543 2455667778899999999999988887442 123
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 190 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 190 (337)
+.+..+++|.++.||..++.+++.+.. ....|.+.....|.++.||..++..+..+.. . ...+.
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~ 213 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGV 213 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHH
Confidence 677788889999999999999999865 3455667788999999999999999866532 1 23345
Q ss_pred HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHH
Q 019679 191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 270 (337)
Q Consensus 191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 270 (337)
+..+..++...++..+...++.. |.+ ..++.+..+++++. +|..++.+++.+.. ...++.+.
T Consensus 214 l~~~~~~~g~~~~~~l~~~lal~----~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~ 275 (410)
T TIGR02270 214 CRRFQVLEGGPHRQRLLVLLAVA----GGP----DAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCL 275 (410)
T ss_pred HHHHHhccCccHHHHHHHHHHhC----Cch----hHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHH
Confidence 55545666666655555555433 322 57778888888866 99999999998763 46778888
Q ss_pred hhccCCChhHHHHHHHHHHHHhh
Q 019679 271 NASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 271 ~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
..+.|+. +++.|..++..|..
T Consensus 276 ~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 276 EAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHhcCcH--HHHHHHHHHHHhhC
Confidence 8888874 99999999999963
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.4e-08 Score=90.54 Aligned_cols=308 Identities=17% Similarity=0.125 Sum_probs=165.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+..||+.+--.|-+.|..-+.-... =+..+.+.+.|+|+.+|..|+..+..+- -..+..-++-.++++..|+++
T Consensus 84 n~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~ 157 (968)
T KOG1060|consen 84 NIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSP 157 (968)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcH
Confidence 4445555544444444332222211 1567778888888888888888777552 112233455567889999999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH---HHHHHhcCCc
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP---AIVELAEDRH 160 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp---~l~~~~~d~~ 160 (337)
.||+.|+.++.++-..-+++. +.+..++..++.|.++-|-.+|+.++..++..- + +.+-+ .++.++.|-+
T Consensus 158 yVRk~AA~AIpKLYsLd~e~k--~qL~e~I~~LLaD~splVvgsAv~AF~evCPer----l-dLIHknyrklC~ll~dvd 230 (968)
T KOG1060|consen 158 YVRKTAAHAIPKLYSLDPEQK--DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPER----L-DLIHKNYRKLCRLLPDVD 230 (968)
T ss_pred HHHHHHHHhhHHHhcCChhhH--HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhH----H-HHhhHHHHHHHhhccchh
Confidence 999999999999887555433 389999999999999999999999888776430 0 11212 1222233322
Q ss_pred hHHHHHHHHHhhHhHhhh--C--------------------------h---hhHHHHHHHHHHHHccccchHHHHHHHHH
Q 019679 161 WRVRLAIIEYIPLLASQL--G--------------------------V---GFFDDKLGALCMQWLKDKVYSIRDAAANN 209 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~--~--------------------------~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 209 (337)
..-+...++.+...+... . + +.-...++.....++...++.|--++++.
T Consensus 231 eWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 231 EWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQL 310 (968)
T ss_pred hhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhH
Confidence 222333333333333221 0 0 00011233333344455555555555555
Q ss_pred HHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--------------------------------
Q 019679 210 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-------------------------------- 257 (337)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-------------------------------- 257 (337)
+..++.... ...+...++.++.+ +..++...+..+..++..-.
T Consensus 311 ~y~lAP~~~----~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 311 FYHLAPKNQ----VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred HHhhCCHHH----HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence 555443221 12223333333322 12233333333333321100
Q ss_pred hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
.+.-...+++-+..+.++.+..+-.++++++|..++.++. ..+.++..|..++...+.-|-..++-.|..+.
T Consensus 386 ~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 386 NESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred hhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 0011234555566666666666777777777777776663 34667777777766666655555555554444
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.4e-08 Score=90.56 Aligned_cols=309 Identities=13% Similarity=0.070 Sum_probs=204.9
Q ss_pred HHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHH
Q 019679 13 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATV 92 (337)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~ 92 (337)
+++..+............++|.+.+....+|.+||+...-.|.+.++.-+..... -+..+.+.+.|+|+-+|..|+..
T Consensus 54 eAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRv 131 (968)
T KOG1060|consen 54 EAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRV 131 (968)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHH
Confidence 3333333333333335788999999999999999999999999998875554221 24567788999999999999999
Q ss_pred HHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhh
Q 019679 93 IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 172 (337)
Q Consensus 93 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~ 172 (337)
+..+--. .....++-.+.++..|..+.||+.|+.++..+-+. +++.. ..+...+..++.|.++.|-.+++.++.
T Consensus 132 lSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k-~qL~e~I~~LLaD~splVvgsAv~AF~ 205 (968)
T KOG1060|consen 132 LSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQK-DQLEEVIKKLLADRSPLVVGSAVMAFE 205 (968)
T ss_pred HHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhH-HHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 9877631 11233444566677899999999999999998764 44443 478888999999999999888888877
Q ss_pred HhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh----------------------------Ch---HH
Q 019679 173 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF----------------------------GP---DW 221 (337)
Q Consensus 173 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----------------------------~~---~~ 221 (337)
.++..-= .....-..-+-+++.|-+.+-+...+..|.+.+..- ++ +.
T Consensus 206 evCPerl--dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~ 283 (968)
T KOG1060|consen 206 EVCPERL--DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP 283 (968)
T ss_pred HhchhHH--HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCc
Confidence 7653210 011111122334555555554555566666554421 01 11
Q ss_pred HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh------
Q 019679 222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV------ 295 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~------ 295 (337)
....++.....++.+.+..|-++++.++-.++... -...+...++.+|.. +.++|....+.+..++..-
T Consensus 284 D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 284 DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEP 358 (968)
T ss_pred cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhh
Confidence 13345556666777888888888888777776532 233455566665544 3677777777777776221
Q ss_pred --------------------------cHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 296 --------------------------DQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 296 --------------------------~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
-++.....|++-|..+.++.+.++-..+++||+.+++..++
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 01122356777777888888888999999999999987653
No 56
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.6e-09 Score=93.15 Aligned_cols=301 Identities=12% Similarity=0.077 Sum_probs=200.6
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH
Q 019679 26 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 105 (337)
Q Consensus 26 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 105 (337)
.....++|.+...++-.|-+.++..-.-+...+..-+.... ..+..+.+-++|++|.+|..|+..++.+.- ...
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~--~avnt~~kD~~d~np~iR~lAlrtm~~l~v----~~i 118 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI--LAVNTFLKDCEDPNPLIRALALRTMGCLRV----DKI 118 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH--hhhhhhhccCCCCCHHHHHHHhhceeeEee----hHH
Confidence 33467899999999888888888888777777765444432 355667778889999999999998887763 334
Q ss_pred HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---hhh
Q 019679 106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGF 182 (337)
Q Consensus 106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~ 182 (337)
.+.+...+.+.++|.++.||..+.-+...+...-..-.....+++.+..++.|.++.|-..++.++..+.+.-. .-.
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 57788889999999999999999988888765533223345688889999999999999999999888876642 122
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E 259 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~ 259 (337)
....++.-+++.++..+.+-+-....++... ...+. -.+.+...+...+.+.+..+-..+...+..+...+.. +
T Consensus 199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y---~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~ 275 (734)
T KOG1061|consen 199 LNPQLINKLLEALNECTEWGQIFILDCLAEY---VPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE 275 (734)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc---CCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH
Confidence 3445666666666665555555554444433 22221 1234555666666666666666666666665554443 2
Q ss_pred HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--------------------------------HHHHHHhhhHH
Q 019679 260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--------------------------------QSVVEKSIRPC 307 (337)
Q Consensus 260 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--------------------------------~~~~~~~i~~~ 307 (337)
.+..++-|-+..++..+. ++...+.+.+..+..+.+ ......++++-
T Consensus 276 ~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~E 354 (734)
T KOG1061|consen 276 LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAE 354 (734)
T ss_pred HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHH
Confidence 233445555555554443 666666555555542211 11223457777
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 308 LVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 308 l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
|.....+.|.+.-..+++|++.++....+
T Consensus 355 l~eYatevD~~fvrkaIraig~~aik~e~ 383 (734)
T KOG1061|consen 355 LKEYATEVDVDFVRKAVRAIGRLAIKAEQ 383 (734)
T ss_pred HHHhhhhhCHHHHHHHHHHhhhhhhhhhh
Confidence 77888888888888999999999876543
No 57
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.16 E-value=9.3e-09 Score=88.74 Aligned_cols=277 Identities=13% Similarity=0.133 Sum_probs=202.9
Q ss_pred CChHHHHHHHHHHHHHHHHh-CCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679 3 KSWRVRYMVANQLYELCEAV-GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 81 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~ 81 (337)
+-..|-..+++++..++..- +++. ....+..+..++..+....|-+|+..|.+++-..+... ...-+-+..+++|.
T Consensus 276 k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~ 352 (898)
T COG5240 276 KFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDE 352 (898)
T ss_pred cchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcc
Confidence 34567888888888887654 5544 46778888899999999999999999999987655442 23445667789999
Q ss_pred cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh-cCCc
Q 019679 82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRH 160 (337)
Q Consensus 82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~d~~ 160 (337)
|..+-..|+..|-+-+. +...+.++..+..++.|-++..+..++.++..++-.++.+. ..++..+...+ +...
T Consensus 353 Nr~IstyAITtLLKTGt----~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg 426 (898)
T COG5240 353 NRTISTYAITTLLKTGT----EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGG 426 (898)
T ss_pred cccchHHHHHHHHHcCc----hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhccc
Confidence 98888888888776654 66677888888888888888888888888888877665443 34556665544 4556
Q ss_pred hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 240 (337)
...+...++.++.+.+..+.. .+..+..+-.+++|.... +.+++.|+-+++......--...+.++.+-+-=.+..
T Consensus 427 ~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~i 502 (898)
T COG5240 427 LEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNI 502 (898)
T ss_pred chHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhH
Confidence 678999999999888876442 356777777888887542 4455566655543221111113444554444446789
Q ss_pred HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
+|.+|+.++..++-........+.+...+..+++|.+.+||..|.-.+..+-
T Consensus 503 vRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 503 VRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 9999999999998777766667788889999999999999999998888874
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.4e-09 Score=92.78 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHH
Q 019679 7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR 86 (337)
Q Consensus 7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr 86 (337)
.++.+=-.+...+..-+... -..++.+..-++|++|.+|..|+.+++.+ +.+.+.+++...+.++++|.++.||
T Consensus 65 lKKlvyLYl~nYa~~~P~~a--~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvR 138 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLA--ILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVR 138 (734)
T ss_pred HHHHHHHHHHHhhccCchHH--HhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHH
Confidence 34444444444443222211 24578888888899999999998888743 4445567778888889999999999
Q ss_pred HHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh
Q 019679 87 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 139 (337)
Q Consensus 87 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 139 (337)
+.++-+..++...-++......+++.+..++.|++|.|-.+|+.++..+.+.-
T Consensus 139 ktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 139 KTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 99999988888776666666788888888888999999999999988887653
No 59
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.09 E-value=3.2e-07 Score=83.63 Aligned_cols=164 Identities=11% Similarity=0.137 Sum_probs=127.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+...|..+++.+-... ..|.+ .+.++|.+.+.....|.++++..-.-+..+++.-+.+.. ..++.+.+-++|+|+
T Consensus 32 n~~~kidAmK~iIa~M-~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQM-SLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHhhccCCCH
Confidence 3444555544432221 23444 578999999999899999999999999988887664433 356778888999999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhh-HHHHHHHHhcCCchH
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS-LLPAIVELAEDRHWR 162 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-llp~l~~~~~d~~~~ 162 (337)
.+|..|++.++.+.. ......+++.+.+++.|.++.||+.|+-++..+-+. +++-+.+. ....+..+..|+++.
T Consensus 107 ~iR~~AlR~ls~l~~----~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~ 181 (757)
T COG5096 107 EIRGFALRTLSLLRV----KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPI 181 (757)
T ss_pred HHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCch
Confidence 999999999998875 445678899999999999999999999999998764 44444455 677778888999999
Q ss_pred HHHHHHHHhhHhHhh
Q 019679 163 VRLAIIEYIPLLASQ 177 (337)
Q Consensus 163 vr~~~~~~l~~l~~~ 177 (337)
|...++..+..+...
T Consensus 182 Vi~nAl~sl~~i~~e 196 (757)
T COG5096 182 VIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhchh
Confidence 999998888777654
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.1e-07 Score=85.26 Aligned_cols=276 Identities=18% Similarity=0.204 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHH
Q 019679 11 VANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 90 (337)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~ 90 (337)
++-+|..++...+++.. ..+.|.+.++++..++-||+.|+.+...+....+.- .+.+++...+++.|.+..|-.+.+
T Consensus 124 VglAL~alg~i~s~Ema-rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL~ek~hGVL~~~l 200 (866)
T KOG1062|consen 124 VGLALCALGNICSPEMA-RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLLCEKHHGVLIAGL 200 (866)
T ss_pred hHHHHHHhhccCCHHHh-HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHHhhcCCceeeeHH
Confidence 34445555555555553 456666666666666666666666666655443321 234555555566666665555555
Q ss_pred HHHHhcCcccChhh-HHhhhHHHHHHhhcC---------------CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679 91 TVIMGMAPILGKDA-TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 154 (337)
Q Consensus 91 ~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~ 154 (337)
..+..+++.-++.. ..+++.+-+...+++ ++|..+...++.|..+++.-. ...+.+-..+.+
T Consensus 201 ~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaq 278 (866)
T KOG1062|consen 201 HLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQ 278 (866)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHH
Confidence 55555554322211 112233333333211 235555555555554444311 111111122222
Q ss_pred Hhc--CCch-HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHH
Q 019679 155 LAE--DRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 231 (337)
Q Consensus 155 ~~~--d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 231 (337)
... |.+. .-.....+++..+.............+.++-++|...+.++|..++++|.+..+. ++ ...+.--..+.
T Consensus 279 vatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~-d~-~avqrHr~tIl 356 (866)
T KOG1062|consen 279 VATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQ-DP-TAVQRHRSTIL 356 (866)
T ss_pred HHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcC-Cc-HHHHHHHHHHH
Confidence 211 1111 1112222333333333333333334445555555555556666666665555442 11 22344446788
Q ss_pred HhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 232 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 232 ~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
++++|++..+|..|++..-.+...-.-......++.++-. .++..|...+..+..+++.+.+
T Consensus 357 eCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~----~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 357 ECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES----SDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888887776655444444444444444 3567777777777777766654
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.7e-06 Score=81.14 Aligned_cols=294 Identities=12% Similarity=0.156 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHH-HHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHH----HHHhhCHHHHHHhhhHhhHHhcC
Q 019679 5 WRVRYMVANQLY-ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK----ICRILNPELAIQHILPCVKELSS 79 (337)
Q Consensus 5 ~~vR~~~~~~l~-~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~----~~~~~~~~~~~~~ll~~l~~l~~ 79 (337)
..+|......+. ......+.+. -..+...+.+...+.+..++..-...+.. ++...+.+.+.. +..+....-+
T Consensus 587 l~~~~~~L~~i~~~~~~~t~~dv-~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~-l~~v~~~~e~ 664 (1176)
T KOG1248|consen 587 LASRSTVLEIIRVDYFTVTPTDV-VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSK-LFTVDPEFEN 664 (1176)
T ss_pred HHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHH-HHHhhHHhhc
Confidence 455666666665 3333333333 34566666666667665555444433333 333333333332 2234444556
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh--HHhhHHHHHH
Q 019679 80 DSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIV 153 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~ 153 (337)
..+..+|+-+.+.|..+......+. ..+++...+..-+++.....|...+.++..+.+..+.+. +....+|-+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI 744 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI 744 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6688999999999999887622222 234556666666777788999999999999999887432 3344555444
Q ss_pred HHhcCCchHHHHHHHHHhhHhH--hhh---Chh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHH
Q 019679 154 ELAEDRHWRVRLAIIEYIPLLA--SQL---GVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWA 222 (337)
Q Consensus 154 ~~~~d~~~~vr~~~~~~l~~l~--~~~---~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~ 222 (337)
-..++.+...|+.+..+|..+. +.. |.+ ...+.+++.+...+-.++..++...+-++..+...++. +..
T Consensus 745 L~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~ 824 (1176)
T KOG1248|consen 745 LSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDET 824 (1176)
T ss_pred HhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 4448888889999888888777 332 433 35567888887777777777776667777777665532 345
Q ss_pred HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH---HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679 223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 299 (337)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~ 299 (337)
.+.++..+.-++...+..++.+|+.++..+...+.... +.+.++|.++.+.+|....+|..+-..|..++..+|.+.
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 67788889999999999999999999999998887653 456689999999999999999999999999999999875
Q ss_pred H
Q 019679 300 V 300 (337)
Q Consensus 300 ~ 300 (337)
+
T Consensus 905 L 905 (1176)
T KOG1248|consen 905 L 905 (1176)
T ss_pred H
Confidence 4
No 62
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.03 E-value=3.7e-08 Score=90.98 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=156.3
Q ss_pred HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
+.+.+-+.+..-+.+++|.-|..+++.+....+.-+ ...+...+...+-..+.|.+..|-..++..+..++..++..
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 335566677777889999999999999988877655 12244455566666789999999999999999999988754
Q ss_pred --HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-
Q 019679 221 --WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ- 297 (337)
Q Consensus 221 --~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~- 297 (337)
.+...++|.+.+.+.+....+|.++..++..++... -...+.+.+..++++.++.+|..+...+.......++
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 345678899999999999999999999999887633 3457889999999999999999999999888877772
Q ss_pred ---HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 298 ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 298 ---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
....+.+.|.+....+|.+.+||..|.++++.+..++|.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 244678999999999999999999999999999999985
No 63
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=99.02 E-value=4.9e-08 Score=86.83 Aligned_cols=236 Identities=17% Similarity=0.282 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CC
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 159 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~ 159 (337)
.++.-+....+.|.++...++.......++|.+.+.+.+. ...-...-.+-.+.+......+...++|.+....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 3444567788889999988888888889999999888542 11112222233344444444556778888888776 55
Q ss_pred chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-Ccc
Q 019679 160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPH 238 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~ 238 (337)
..+++...++.+..+.+...++.+.+.++|++...++|.+..+++.+++.+..+.+.++...+.+.++|.+..+.. ..+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 5678889999999999999999999999999999999999999999999999999999877788899999988754 456
Q ss_pred hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--HHHHHHhhhHHHHhhhCCCC
Q 019679 239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPD 316 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~d~~ 316 (337)
..+|..++.|++.+++.+......+.+.|++.+. +-.++.+.....+....++-... .+...++++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 8999999999999998777766666676666655 33446777777777766654332 35667889999988766555
Q ss_pred ccH
Q 019679 317 VDV 319 (337)
Q Consensus 317 ~~v 319 (337)
-.+
T Consensus 522 L~~ 524 (700)
T KOG2137|consen 522 LNG 524 (700)
T ss_pred ccH
Confidence 433
No 64
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.02 E-value=3.5e-09 Score=71.73 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=72.7
Q ss_pred HHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH--HhhhHHHHHHhhcCCC
Q 019679 46 VRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEF 121 (337)
Q Consensus 46 vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~ 121 (337)
.|+.++.+|..++..++.. .+.+.++|.+...++|++++||..+++++.++++..+.+.. ..++.+.+.+++.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4788888888888877765 56677888888999999999999999999999987776553 3678888899999999
Q ss_pred hhHHHHHHHhHHHhH
Q 019679 122 PDVRLNIISKLDQVN 136 (337)
Q Consensus 122 ~~vr~~a~~~l~~l~ 136 (337)
+.||.+| ..+.++.
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999877 4455443
No 65
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=7.7e-06 Score=76.90 Aligned_cols=331 Identities=14% Similarity=0.134 Sum_probs=220.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCC-----------CcccchHHHHHHhcCCCh------HHHHHHHHHhHH-HHHHhhCHHH
Q 019679 4 SWRVRYMVANQLYELCEAVGPE-----------PTRSDVVPAYVRLLRDNE------AEVRIAAAGKVT-KICRILNPEL 65 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~-----------~~~~~l~~~l~~~~~d~~------~~vR~~a~~~l~-~~~~~~~~~~ 65 (337)
++..|-.+|.+|..+.....|. ..-+..+|.+........ ...|...+.... ..... .+.+
T Consensus 530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~-t~~d 608 (1176)
T KOG1248|consen 530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTV-TPTD 608 (1176)
T ss_pred chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhc-ccHH
Confidence 4567888888888888664211 112246777777665432 334444444443 22222 2333
Q ss_pred HHHhhhHhhHHhcCCCcHHHHH----HHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch
Q 019679 66 AIQHILPCVKELSSDSSQHVRS----ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 141 (337)
Q Consensus 66 ~~~~ll~~l~~l~~d~~~~vr~----~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 141 (337)
+...+..-+..+..+.+..++. ..+..+..++........ ..+..+.-..-+..+..+++-+...|..+......
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~ 687 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-SKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG 687 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-HHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence 3344555566666666544443 344444445554443322 22333334444455789999999999999887332
Q ss_pred h----hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHH-
Q 019679 142 D----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLA- 214 (337)
Q Consensus 142 ~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~- 214 (337)
+ .....+...+.+-.++.+...|...+.++..+.+..+.+. +.+..+|-++=.+++.+..-|+.+..+|-.++
T Consensus 688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 2 2335677777777788888899999999999999888443 34455555544558888888888888877776
Q ss_pred -HH---hChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc---cChHHHHhhHHHHHHhhccCCChhHHHHH
Q 019679 215 -EE---FGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVVINASKDRVPNIKFNV 284 (337)
Q Consensus 215 -~~---~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 284 (337)
.. .|.+. ..+.+++.+..-+.....+++...+-++..+... .....+.+.++..+..++....++++.+|
T Consensus 768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA 847 (1176)
T KOG1248|consen 768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA 847 (1176)
T ss_pred HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 22 23222 3455666666665555566665556666666432 23445677899999999999999999999
Q ss_pred HHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 285 AKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 285 ~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
+..+..+...++.. .+.+.++|.+..+..|....+|..+-..|..+.+.||-
T Consensus 848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 99999999888765 44567899999999999999999999999999999874
No 66
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.5e-06 Score=72.89 Aligned_cols=258 Identities=16% Similarity=0.108 Sum_probs=162.7
Q ss_pred HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhH-HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH
Q 019679 68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLL-PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 144 (337)
Q Consensus 68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 144 (337)
..++..+.+-..|++..+|..++.++++.+...+..... ..++ -++..+..+.+.+|...+++++..+.+......+
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 445555666778999999999999999999876654422 3333 4444555566789999999999999888776666
Q ss_pred HhhHHHH---HHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHH---HccccchHHHHHHHHHHHHHHH
Q 019679 145 SQSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQ---WLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 145 ~~~llp~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
...+++. +.++..+.+..+|.++...++.++...|. +.+.+++..-+.. -+.|+++.|-.++=..+.....
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence 5555554 45677899999999999999999988754 3344444433222 3578888876654444333223
Q ss_pred HhChHHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 216 EFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 216 ~~~~~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
+++ .+.+-..+-+.+ |.. .+.+.-.-.+...+.+.+.. ..-.+......+++...+.||.++...-..+...
T Consensus 417 ~l~----rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 417 NLV----RKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred hhH----HHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 222 222222222222 211 12222222222222222211 1112333344556666678898888777777666
Q ss_pred hcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 295 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 295 ~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
+.++ .....+...+..+-.|+-++++..+.+|++.+..
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 6554 2235677788889999999999999999987653
No 67
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.93 E-value=8.3e-08 Score=85.45 Aligned_cols=228 Identities=16% Similarity=0.181 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcHHH
Q 019679 7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHV 85 (337)
Q Consensus 7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~~v 85 (337)
-+-.+.+.|..+...++....+..++|.+...+.+ ...--...-.+..|++..+..++...++|.+....+ -.+-.+
T Consensus 289 qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~ 366 (700)
T KOG2137|consen 289 QKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQA 366 (700)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccc
Confidence 34455666777777777777667777777777643 222222333444555555666666677777766655 333466
Q ss_pred HHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh-cCCchHHH
Q 019679 86 RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVR 164 (337)
Q Consensus 86 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~d~~~~vr 164 (337)
+...++.+..+.+....+...+.++|.+...++|.+..++..+++.++.+.+.+....+.+.++|.+..+. ...+..++
T Consensus 367 ~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vk 446 (700)
T KOG2137|consen 367 LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVK 446 (700)
T ss_pred hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHH
Confidence 67777777777777777777777888888888887788888888888888877776666777777777654 45666777
Q ss_pred HHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HhChHHHHhhHHHHHHHhhcCc
Q 019679 165 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE--EFGPDWAMQHIVPQVLEMINNP 237 (337)
Q Consensus 165 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~ 237 (337)
..++.+++.+++.++.....+++.|++.+ .+-.++.+....++....+.- ..|.+...++++|.++.+...+
T Consensus 447 vn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 77888888777777766666666666544 333334444433333333221 1122444556667666655443
No 68
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.92 E-value=1.4e-06 Score=79.46 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+..+++.+--.+...++.-|... -..++.+.+-++|+|+.+|..|+++++.+ +...+...+++.++++++|+++
T Consensus 68 d~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~a 141 (757)
T COG5096 68 DVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHA 141 (757)
T ss_pred CHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcH
Confidence 45566666666666655444222 13688899999999999999999998854 5567778899999999999999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 138 (337)
.||+.|+-++.++-+.-...........++..++.|++|.|..+|+.++..+-..
T Consensus 142 yVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 142 YVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999998864443322233788889999999999999999999887654
No 69
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.3e-07 Score=81.36 Aligned_cols=287 Identities=17% Similarity=0.139 Sum_probs=177.8
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 108 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 108 (337)
..++|++..++.+....|-..++.++..+....+.+.. -.+..+.-+++.+....|-+|...|.+++...+.... .
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~ 319 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--V 319 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--c
Confidence 45677777777777777766666666655443322211 1334455567777777777777777777765543221 1
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 188 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 188 (337)
--+-+..++.|.+..+-.-|+..+-.-+. +.-...++..+..+..|-+...+..+++.+..++..++... .-++
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m 393 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMM 393 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHH
Confidence 11234555666665555555544433322 22224455555555555555566666677777776665432 3456
Q ss_pred HHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHH
Q 019679 189 ALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLP 267 (337)
Q Consensus 189 ~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 267 (337)
+.+.+.|++ ...+-+.+.+.++..+.+... + ..+.-+.++++++.|-. .+.-+...++.++.-......-+..+-
T Consensus 394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~p-d-sKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENP-D-SKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHhCc-c-hhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhH
Confidence 666666665 445778888888888887542 2 24567788888888855 333455555555543322222233444
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 268 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 268 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
++.+...=.+..||.+|..+|..++ .+.......+.-.|.+++.|+|.+||..|.-++..+-
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5555555567899999999999998 3444455678888889999999999999988887765
No 70
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.2e-06 Score=76.26 Aligned_cols=228 Identities=18% Similarity=0.174 Sum_probs=152.5
Q ss_pred HHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHH
Q 019679 15 LYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIM 94 (337)
Q Consensus 15 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~ 94 (337)
|+-+.....|+.. -.+.+-+..++++.-+-+|+.|+..+.++....+.. .....|.++.-++|++|.|..+|...++
T Consensus 130 L~GLS~fvTpdLA-RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VIC 206 (877)
T KOG1059|consen 130 LSGLSCIVTPDLA-RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVIC 206 (877)
T ss_pred ecccccccCchhh-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHH
Confidence 3333334444443 357888889999999999999999998887655443 2345688888899999999999999999
Q ss_pred hcCcccChhhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhH
Q 019679 95 GMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 173 (337)
Q Consensus 95 ~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~ 173 (337)
.++..-++.. -.+-|.|.+++.++ +..+-...++-++.+... . .-+.+.++|.+.+++...+ ......+++..
T Consensus 207 ELArKnPkny--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl-E-PRLgKKLieplt~li~sT~--AmSLlYECvNT 280 (877)
T KOG1059|consen 207 ELARKNPQNY--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL-E-PRLGKKLIEPITELMESTV--AMSLLYECVNT 280 (877)
T ss_pred HHHhhCCccc--ccccHHHHHHHhccCCCeehHHHHHHHhhcccc-C-chhhhhhhhHHHHHHHhhH--HHHHHHHHHHH
Confidence 9998776543 34678888888654 345555566666666543 1 1233667788887776543 23334445444
Q ss_pred hHhh---hCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHH
Q 019679 174 LASQ---LGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQ 247 (337)
Q Consensus 174 l~~~---~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~ 247 (337)
++.. .|. .....-.+.-+-.++.|.+++.+..++.+++.+++.. .+..+.-...++.++.|.+..+|..|+.
T Consensus 281 VVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 281 VVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAHKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred heeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHhHHHHHHHhccCCchhHHHHHH
Confidence 4333 121 1112223333345677888999999999999888775 2234455667788888888888888887
Q ss_pred HHHHhc
Q 019679 248 AISLLA 253 (337)
Q Consensus 248 ~l~~l~ 253 (337)
.+-.+.
T Consensus 359 Ll~gmV 364 (877)
T KOG1059|consen 359 LLYGMV 364 (877)
T ss_pred HHHHHh
Confidence 776654
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.90 E-value=8e-09 Score=69.89 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=57.4
Q ss_pred HHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 32 VPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 32 ~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
+|.+.+.+ +|+++.+|..++.+++.+.. ...+|.+.++++|+++.||..++.+++.++. +..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 35566666 77778888887777774422 2456667777778888888888888877742 4466
Q ss_pred HHHHHhhcCC-ChhHHHHHHHhHH
Q 019679 111 PIFLSLLKDE-FPDVRLNIISKLD 133 (337)
Q Consensus 111 ~~l~~~l~d~-~~~vr~~a~~~l~ 133 (337)
+.+.+++.++ +..||..|+.+|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7777766554 4556777777664
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=6.1e-06 Score=73.61 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=138.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC--C
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS--D 80 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~--d 80 (337)
+-+-||+.++-.+-.+.-..+... ...+|-+.+-+.|+|+.|..+|+..+..++...++.-. .+-|.+.+++. +
T Consensus 156 skpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkllttSs 231 (877)
T KOG1059|consen 156 SKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKLLVTSS 231 (877)
T ss_pred CchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHHHhccC
Confidence 345688888888888876666554 35699999999999999999999999999998665422 35676766654 4
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHh
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELA 156 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~ 156 (337)
.||.. --.++.++++...=+. .-..++|.+.+++.... ..+-..+++++-...-..| .....+.....+..++
T Consensus 232 NNWmL-IKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fi 308 (877)
T KOG1059|consen 232 NNWVL-IKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFI 308 (877)
T ss_pred CCeeh-HHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhh
Confidence 56743 3345666666653221 23578888888887654 2444444444433211112 1233456677777888
Q ss_pred cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 214 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 214 (337)
.|.++..|...+-+++.+...-... ...-.++++.+|.|.+.++|-.|+..+--+.
T Consensus 309 edsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 309 EDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred hcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 9999999999988888887764332 2345677888999999999988877665553
No 73
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.8e-06 Score=77.79 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHH
Q 019679 229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL 308 (337)
Q Consensus 229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l 308 (337)
.+-.++.+++-..|..++..+....+.-. ...+.--..++.+++|++..+|+.|...+-.+...-.-......++.
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~-- 392 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLE-- 392 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHH--
Confidence 33333433333444444444444333211 12334456788999999999999999988888764433333333333
Q ss_pred HhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 309 VELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 309 ~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
++...+++.+...+..+..++..|.+
T Consensus 393 --fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 393 --FLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred --HHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 33334666777777777777666654
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.88 E-value=3.3e-08 Score=67.03 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCCCc
Q 019679 242 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDV 317 (337)
Q Consensus 242 R~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~ 317 (337)
|..++.++..++..++.. .+.+.++|.++.++.|+++.||..|+++|..+++..+.+. +...+.+.|.++..|+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 555666666655555532 3455666777777777777777777777777766666542 345666666667777777
Q ss_pred cHHHHH
Q 019679 318 DVRFFA 323 (337)
Q Consensus 318 ~vr~~a 323 (337)
+||..|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 776544
No 75
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.88 E-value=1.7e-07 Score=72.18 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+|.||-.++.+++.++...+.-. ...+|.+...+.|+++.||+.|+..+..+...-.- .....++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCCH
Confidence 57899999999999998887543 45689999999999999999999999988764211 2223444555567899999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 117 (337)
.||..|...+..+....++......+.+.+..+-
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 9999999999999987555555555555554443
No 76
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-05 Score=75.25 Aligned_cols=325 Identities=16% Similarity=0.095 Sum_probs=193.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC---hHH--HHHHHHHhHHHHHHhhCHHHHHHh---hhHhhH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN---EAE--VRIAAAGKVTKICRILNPELAIQH---ILPCVK 75 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~---~~~--vR~~a~~~l~~~~~~~~~~~~~~~---ll~~l~ 75 (337)
+|..|+.++-.++.+... ++. .+.++.++.-.+..+ .+. +.-..+..+.++.+..+.+....+ .+..+.
T Consensus 188 ~~~~r~~aalllsk~~sR--~D~-~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~ 264 (1133)
T KOG1943|consen 188 SGILRRSAALLLSKLFSR--TDV-KDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLS 264 (1133)
T ss_pred cchhHHHHHHHHHHHccc--ccH-HHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhc
Confidence 566777777776655421 111 112333333333222 222 445666777778777666533222 222222
Q ss_pred Hh--cCCCcHHHHHHHHHHHHhcCccc----------------------------------------Chh--hHHhhhHH
Q 019679 76 EL--SSDSSQHVRSALATVIMGMAPIL----------------------------------------GKD--ATIEQLLP 111 (337)
Q Consensus 76 ~l--~~d~~~~vr~~a~~~l~~l~~~~----------------------------------------~~~--~~~~~l~~ 111 (337)
.. .+|...-+|+..++.+-.++-.. +++ ...+.++.
T Consensus 265 ~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie 344 (1133)
T KOG1943|consen 265 VCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIE 344 (1133)
T ss_pred ccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHH
Confidence 22 12333466666666665443210 001 12346788
Q ss_pred HHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhh-ChhhHHHHHHH
Q 019679 112 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGA 189 (337)
Q Consensus 112 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~ 189 (337)
.+.+.++|.+..||..|+++++.+.+..+.+ +...++..+.++.. -++...-++++-++..++..- -.....+.++|
T Consensus 345 ~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvp 423 (1133)
T KOG1943|consen 345 HLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVP 423 (1133)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 8889999999999999999999999987743 33444444444321 112333447777777777542 22234567899
Q ss_pred HHHHHcccc--------chHHHHHHHHHHHHHHHHhChHHH---HhhHHHHH-HHhhcCcchHHHHHHHHHHHHhccccC
Q 019679 190 LCMQWLKDK--------VYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQV-LEMINNPHYLYRMTILQAISLLAPVMG 257 (337)
Q Consensus 190 ~l~~~l~d~--------~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l-~~~~~~~~~~vR~~~~~~l~~l~~~~~ 257 (337)
.+...+.-+ ...||.+|+.....++....+..+ .+.+.+.+ ...+=|++...|.+|.-++.......|
T Consensus 424 lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~ 503 (1133)
T KOG1943|consen 424 LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQG 503 (1133)
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCC
Confidence 998888643 357999999999999998876543 23344443 344458888999888877766543221
Q ss_pred h-----H------H-------------------HHhhHHHHHHhh----ccCCChhHHHHHHHHHHHHhhhhcHHHHHHh
Q 019679 258 S-----E------I-------------------TCSQLLPVVINA----SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 303 (337)
Q Consensus 258 ~-----~------~-------------------~~~~l~~~l~~~----l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 303 (337)
. + + |..+.-|.+..+ +..-+..+|..++.+|..+...- ++.....
T Consensus 504 n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-pk~~a~~ 582 (1133)
T KOG1943|consen 504 NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-PKYLADY 582 (1133)
T ss_pred CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-HHhhccc
Confidence 1 1 0 011122233322 55667899999999999976543 3444456
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
++|-+......++...|..+..+.+.+...
T Consensus 583 ~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 583 VLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred chhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 666666666667788888888877776654
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.84 E-value=4.1e-08 Score=66.38 Aligned_cols=86 Identities=29% Similarity=0.432 Sum_probs=65.3
Q ss_pred HHHHHHhh-cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhh
Q 019679 227 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR 305 (337)
Q Consensus 227 ~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~ 305 (337)
+|.+.+.+ +++++.+|..++.+++.+ + .+..+|.+..+++|+++.||.+++.+|+.++. ....
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45666766 788899999998888843 2 23678888888899999999999999998842 4567
Q ss_pred HHHHhhhCC-CCccHHHHHHHHHH
Q 019679 306 PCLVELSED-PDVDVRFFATQALQ 328 (337)
Q Consensus 306 ~~l~~l~~d-~~~~vr~~a~~al~ 328 (337)
+.|..++.| ++..||..|+++|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777775554 45667988988875
No 78
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.82 E-value=1e-06 Score=71.23 Aligned_cols=191 Identities=9% Similarity=0.090 Sum_probs=138.0
Q ss_pred chHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHHHH--hhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH
Q 019679 30 DVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQ--HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 106 (337)
Q Consensus 30 ~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~--~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 106 (337)
+-+..+..+++ .++|.+++.+..+++..+.+-....... ..++.+..++.++++.+|..|+.++.+++.........
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 44566667776 4689999999999998766543333322 37899999999999999999999999998766555444
Q ss_pred hhhHHHHHHhh-cC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--hhh
Q 019679 107 EQLLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF 182 (337)
Q Consensus 107 ~~l~~~l~~~l-~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~ 182 (337)
+..++.+++.. .+ .+..++.++++.|..+.-......+....+|.+..++...+..+|..++..+..++.... .+.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~L 171 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTREL 171 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence 54555555543 33 367899999999998864433334445577888888888888999999999999887643 334
Q ss_pred HHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChH
Q 019679 183 FDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
...+..+.++.++... ..++...++..+..+...+..+
T Consensus 172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 4455666777777654 5677777777777777666443
No 79
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.82 E-value=7.5e-07 Score=68.65 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchH
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 162 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~ 162 (337)
|.||..++-++|.++..++. ..+..+|.+...++|+++.||+.|+..+..+... +.-.+...++..+...+.|+++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 45666666666665554442 2344555666666666666666666666555443 22222233444445555666666
Q ss_pred HHHHHHHHhhHhHhhhChhhHHHHHHHHHH
Q 019679 163 VRLAIIEYIPLLASQLGVGFFDDKLGALCM 192 (337)
Q Consensus 163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 192 (337)
+|..+...+..+....+++.+.+.+.+.+.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 666666666666555444444443444433
No 80
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.81 E-value=6.7e-07 Score=70.22 Aligned_cols=75 Identities=25% Similarity=0.256 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
...++..+-.+|++. ..+-+|.+...+.|. .+-||..|.++|+.++. ...++.+.+..+|+-
T Consensus 50 ~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~~l~k~~~dp~ 113 (289)
T KOG0567|consen 50 ALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLEILTKYIKDPC 113 (289)
T ss_pred hhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHHHHHHHhcCCc
Confidence 334444555555443 234566666666553 36667777777766652 234455555556666
Q ss_pred HHHHHHHHHHHHh
Q 019679 83 QHVRSALATVIMG 95 (337)
Q Consensus 83 ~~vr~~a~~~l~~ 95 (337)
..||..+..++..
T Consensus 114 ~~v~ETc~lAi~r 126 (289)
T KOG0567|consen 114 KEVRETCELAIKR 126 (289)
T ss_pred cccchHHHHHHHH
Confidence 6666655444443
No 81
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.81 E-value=3.9e-07 Score=84.42 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=155.3
Q ss_pred hCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679 61 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 61 ~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 137 (337)
+.+.++.+.+-+-+...+.|++|.-|..+++.+....+.-+ .......+...+.....|.+-.|...++..+..++.
T Consensus 245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 34445667777778888889999999999999988776444 122234555566666789999999999999999998
Q ss_pred hhchh--hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 138 VIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 138 ~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
..+.. .+...++|.+...+.+....+|..+..++..++... ....+.+.+..++++.++.+|..+...+.....
T Consensus 325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 87753 345668888888889999999999988888887743 345678888889999999999999888888888
Q ss_pred HhCh----HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679 216 EFGP----DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 262 (337)
Q Consensus 216 ~~~~----~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 262 (337)
..++ ......+.|++....+|.+..||.++..+++.+...+|.+.+.
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7763 2235678899999999999999999999999988888876554
No 82
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.79 E-value=8.9e-05 Score=65.41 Aligned_cols=302 Identities=17% Similarity=0.164 Sum_probs=191.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCC---c----cc-chHHHHHHhcCC-----C--hHHHHHHHHHhHHHHHHhhCHHHHHH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEP---T----RS-DVVPAYVRLLRD-----N--EAEVRIAAAGKVTKICRILNPELAIQ 68 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~---~----~~-~l~~~l~~~~~d-----~--~~~vR~~a~~~l~~~~~~~~~~~~~~ 68 (337)
+...-+.+++++..+......+. . .+ .++|.+.+...+ . ++.+-..+...+..+...++.+...+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455666777777766554333 1 11 267777666622 1 25666677777777777777764432
Q ss_pred hhhHhhHHhcC----------CCc------HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHh
Q 019679 69 HILPCVKELSS----------DSS------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISK 131 (337)
Q Consensus 69 ~ll~~l~~l~~----------d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~ 131 (337)
. +..+..+.- +.+ ...-......++.+-+...-. ....++..+..+.. ..++..|..+++.
T Consensus 136 ~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 213 (415)
T PF12460_consen 136 I-LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQL 213 (415)
T ss_pred H-HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 2 222222111 111 111122333344444322211 12345566666544 4458999999999
Q ss_pred HHHhHhhhchhhHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhh--ChhhHHHHHHHHHHHHccccchHHHHHHHH
Q 019679 132 LDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAAN 208 (337)
Q Consensus 132 l~~l~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 208 (337)
+..++.....+...+.++..+.... .......|...++.+.-+.+.+ ........+++.+++++.| +.+...+++
T Consensus 214 la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~ 291 (415)
T PF12460_consen 214 LASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAK 291 (415)
T ss_pred HHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHH
Confidence 9999988765544455555555544 4555566777777666665554 1122345678888888888 778888999
Q ss_pred HHHHHHHHhC---------------hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH---HhhHHHHHH
Q 019679 209 NVKRLAEEFG---------------PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVI 270 (337)
Q Consensus 209 ~l~~~~~~~~---------------~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~ 270 (337)
+++.+....+ .+.+...++|.+.+.+++.+...|..++.++..+.+......+ .+.++|.++
T Consensus 292 ~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLl 371 (415)
T PF12460_consen 292 AFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLL 371 (415)
T ss_pred HHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 9988865421 1233556889999998887777899999999999888886654 457999999
Q ss_pred hhccCCChhHHHHHHHHHHHHhhhhcHHHH---HHhhhHHHHh
Q 019679 271 NASKDRVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLVE 310 (337)
Q Consensus 271 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~ 310 (337)
+.+.-++..++.++..+|..+...- ++.+ .+.++|.|.+
T Consensus 372 qsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 372 QSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLK 413 (415)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998765 3323 3345555443
No 83
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.6e-05 Score=71.88 Aligned_cols=324 Identities=17% Similarity=0.140 Sum_probs=189.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhc--
Q 019679 1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-- 78 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~-- 78 (337)
+|++-.+||++..++.+.....|..-.--+++ ...+.-.-.-|..+...+.......+ .+.-|.+..++
T Consensus 481 FDrevncRRAAsAAlqE~VGR~~n~p~Gi~Li----s~~dy~sV~~rsNcy~~l~~~ia~~~-----~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 481 FDREVNCRRAASAALQENVGRQGNFPHGISLI----STIDYFSVTNRSNCYLDLCVSIAEFS-----GYREPVFNHLLTK 551 (1133)
T ss_pred cCchhhHhHHHHHHHHHHhccCCCCCCchhhh----hhcchhhhhhhhhHHHHHhHHHHhhh-----hHHHHHHHHHHhc
Confidence 57888888888888887776555432111111 12222223345554444443333222 23334444444
Q ss_pred --CCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh-----HH------
Q 019679 79 --SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-----LS------ 145 (337)
Q Consensus 79 --~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~------ 145 (337)
.+=+..+|..++.+|.++...-++ ...+..+|.++...-..+...|..+..+.+.+......-. +.
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~~pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLTEPK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhHH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 344678999999999998765553 3456677777777777889999998888877765432110 10
Q ss_pred -hhHHHHHHHHhcCCc--hHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC-
Q 019679 146 -QSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG- 218 (337)
Q Consensus 146 -~~llp~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~- 218 (337)
..++|.+....-... .-.|.+....+..+...-. .+.+.+..-.++...+.+++ .+|+++..+++.+...+-
T Consensus 631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 112333322221111 3345555555554443321 23444555556666667777 999999999999987651
Q ss_pred -hHHHHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhh
Q 019679 219 -PDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIV 295 (337)
Q Consensus 219 -~~~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~ 295 (337)
.+.....++.....-+.+ .+.++|.....+++.+....-.....+++...++.... |-+++-|+..+.++..+.+.+
T Consensus 710 ~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~ 789 (1133)
T KOG1943|consen 710 ADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTV 789 (1133)
T ss_pred cCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHH
Confidence 111112243444444444 46888988888887765322122234445455555443 337888999999999999887
Q ss_pred cH-------HHHHHhhhHHHHhhhCCCCcc----HHHHHHHHHHHHHHhhh
Q 019679 296 DQ-------SVVEKSIRPCLVELSEDPDVD----VRFFATQALQSKDQVMM 335 (337)
Q Consensus 296 ~~-------~~~~~~i~~~l~~l~~d~~~~----vr~~a~~al~~l~~~~~ 335 (337)
+. +.+.+.++.++.....|.-.+ ||..|.+++..+.....
T Consensus 790 ~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 790 TSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 72 234455666666665555433 79999999998876554
No 84
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.73 E-value=2.4e-06 Score=69.06 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=110.9
Q ss_pred HHHHhhc-CCChhHHHHHHHhHHHhHhhhchhh-HHh-hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679 112 IFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDL-LSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 188 (337)
Q Consensus 112 ~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~-~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 188 (337)
.+..+++ .++|.+++.+..+++..+.....+. +.+ ..++.+.+++.++++.+|..++.++..++.........+..+
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i 95 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI 95 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 3334443 3355666666665555443322111 111 245555566666666666666665555544432222222233
Q ss_pred HHHHHH-ccc-cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--hHHHHhh
Q 019679 189 ALCMQW-LKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--SEITCSQ 264 (337)
Q Consensus 189 ~~l~~~-l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~ 264 (337)
+-+.+. ..+ .+..++.++++.|..+.-...........+|.+..++...+...|..++..+..++..-. .+.....
T Consensus 96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q 175 (254)
T PF04826_consen 96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQ 175 (254)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 333322 222 245666667777776654333333344456666667766666677777777777765432 3333444
Q ss_pred HHHHHHhhccCC-ChhHHHHHHHHHHHHhhhhcHH----------------H--HHHhhhHHHHhhhCCCCccHHHHH
Q 019679 265 LLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS----------------V--VEKSIRPCLVELSEDPDVDVRFFA 323 (337)
Q Consensus 265 l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~----------------~--~~~~i~~~l~~l~~d~~~~vr~~a 323 (337)
.++.+..++... ..++-..++..+..+.+.++.+ . -.+.+..-|..+...+|++||..+
T Consensus 176 ~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 176 VLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred chhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 555666666544 4566666777777776554332 0 012355555566677888888654
No 85
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.72 E-value=1.7e-07 Score=67.39 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=75.8
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC---hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--H
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V 299 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~ 299 (337)
.+++.+.+++.+.++.+|..++.+++.++.... ........+|.+.+++.|+++.+|..++.+|+.++...+.. .
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 467777777777778888888888888775422 12223367888888888888888888888888887654321 1
Q ss_pred -HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 300 -VEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 300 -~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
....+++.+.+++++.+.++|..++.+|..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22346777878777778888888888887764
No 86
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3.4e-06 Score=75.85 Aligned_cols=273 Identities=12% Similarity=0.133 Sum_probs=181.4
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
..+|-..++.++..+....+-... ..+..+.-++..+....|-+|..+|.+++-..+.... ..-.-+..+++|.|.
T Consensus 258 ~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~Nr 333 (865)
T KOG1078|consen 258 SEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNR 333 (865)
T ss_pred hHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhccccc
Confidence 445566666666655544333332 2566777788899999999999999999887655421 223345668899998
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CCchH
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWR 162 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~~~~ 162 (337)
.+-..|...+-+-+. +...+.++..+..+..|-+.+.+..++.++..++..++... ..+++.+..++. +....
T Consensus 334 sIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e 407 (865)
T KOG1078|consen 334 SIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFE 407 (865)
T ss_pred chhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCch
Confidence 888888887776664 55566777777788777777777777777777776654322 346677766654 44557
Q ss_pred HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHH
Q 019679 163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR 242 (337)
Q Consensus 163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR 242 (337)
-+...++++..++...... .+.-+..+..++.|.. .++.+..-+..+++.......-...+.++.+..-=.+..+|
T Consensus 408 ~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivR 483 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVR 483 (865)
T ss_pred HHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhH
Confidence 7888888888887754321 1223444445555543 34555555655554322111112334444444334578899
Q ss_pred HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 243 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
.+|+.++..++ .+.+...+.+.-.+..++.|.+.+||.+|.-.|..+-
T Consensus 484 aaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 484 AAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 99999999987 5555567788888889999999999999988888775
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.4e-05 Score=71.66 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=136.4
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHH
Q 019679 35 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL 114 (337)
Q Consensus 35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 114 (337)
+.+-+++||.-+|-..+..|.++ ...+....++|.+.+.+++.+..||+.|.-++..+-..+. ....+.-..+.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~ 177 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIE 177 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHH
Confidence 34445677888888877666644 4445667789999999999999999999988888775421 11112222222
Q ss_pred Hh-hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH
Q 019679 115 SL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 193 (337)
Q Consensus 115 ~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 193 (337)
++ ..+.++..+++|+-.|...-+...- +.+...+ .-+.+-+...+...++.+-..+..-+. -...++..+.+
T Consensus 178 ~fL~~e~DpsCkRNAFi~L~~~D~ErAl----~Yl~~~i-dqi~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i~~ 250 (948)
T KOG1058|consen 178 SFLLTEQDPSCKRNAFLMLFTTDPERAL----NYLLSNI-DQIPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCIYN 250 (948)
T ss_pred HHHHhccCchhHHHHHHHHHhcCHHHHH----HHHHhhH-hhccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHHHH
Confidence 22 3467788888887666544321100 0000000 000111112222223333222221111 11223333444
Q ss_pred HccccchHHHHHH-----------------HHHHHHHHHHh------------------ChHHHHhhHHHHHHHhhcCcc
Q 019679 194 WLKDKVYSIRDAA-----------------ANNVKRLAEEF------------------GPDWAMQHIVPQVLEMINNPH 238 (337)
Q Consensus 194 ~l~d~~~~vr~~a-----------------~~~l~~~~~~~------------------~~~~~~~~l~~~l~~~~~~~~ 238 (337)
+|..+++.|+..| +.++-.+.... +.+.+.+.++--++..+..++
T Consensus 251 lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~d 330 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPD 330 (948)
T ss_pred HHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccc
Confidence 4433333333222 22222211111 112223444444555666677
Q ss_pred hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhh---ccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCC
Q 019679 239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDP 315 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~ 315 (337)
..+|..++...-.++..-.-+.....+-.-+.+. =+|++..-|+..+++++..+-.++. +...+.|.|.....|.
T Consensus 331 ldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 331 LDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDS 408 (948)
T ss_pred ccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccC
Confidence 7777777766666655443332222222222221 1344456677777777777666653 3456666666666665
Q ss_pred CccHHHHHHHHHHH
Q 019679 316 DVDVRFFATQALQS 329 (337)
Q Consensus 316 ~~~vr~~a~~al~~ 329 (337)
++.--......+..
T Consensus 409 N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 409 NEAAASDVLMFVRE 422 (948)
T ss_pred CHHHHHHHHHHHHH
Confidence 54433333333333
No 88
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=6.9e-06 Score=74.67 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=129.8
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 154 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~ 154 (337)
.+.|+.+.+|..++..+..+.+... .-.....++.++...++|.++.|--+|++++..+++... +.++|.+.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~e 809 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLSE 809 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHHH
Confidence 4568888899999999988887332 222346789999999999999999999999999988754 345555554
Q ss_pred ----HhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHHHhh
Q 019679 155 ----LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQH 225 (337)
Q Consensus 155 ----~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~ 225 (337)
.-+......|.-+-+++..+++..|+-. +...++..++....|++...|..++..+|.+++... .++ ...
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~-~~e 888 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF-FHE 888 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH-HHH
Confidence 2233323344444488888888887643 556788999999999999999999999999987653 343 333
Q ss_pred HHHHHHHhh-cCcchHHHHHHHHHHHHhccccCh
Q 019679 226 IVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGS 258 (337)
Q Consensus 226 l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~ 258 (337)
++..+.... .|.+..+|.+|+..+..+-...|.
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 444444444 477899999999999988777763
No 89
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.66 E-value=3.5e-07 Score=65.76 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=88.4
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh-
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA- 104 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~- 104 (337)
..++|.+.+.+.+.++.+|..++.++..++...+.. .....++|.+.++++|+++.+|..++.++++++...+...
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 347889999999999999999999999998763222 2334789999999999999999999999999997654211
Q ss_pred --HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679 105 --TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 136 (337)
Q Consensus 105 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 136 (337)
....+++.+.+.+.+.+..+|..++..+..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22458999999999999999999999988775
No 90
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.65 E-value=7.7e-05 Score=58.96 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc--CCChhHHHHHHHHHHHHhhhhcHHHHHHh
Q 019679 226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSVVEKS 303 (337)
Q Consensus 226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 303 (337)
-+..+.+-+.+++.-.|-.+...+|++-. +.-+|.+.+.|. .+++-||-.|+.+|+.++. +.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~ 251 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------ED 251 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HH
Confidence 44556666677777788888778877542 234455555554 4457899999999999975 68
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
.++.|.++++|+++-||..+.-+|...-...
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999998888765443
No 91
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.63 E-value=9.2e-05 Score=68.37 Aligned_cols=300 Identities=17% Similarity=0.205 Sum_probs=180.2
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--h
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--D 103 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~ 103 (337)
...+++.+...+..++.++...++..|.+++-.-.. ......++|.+.+++..++..++..++..|.+++..-.- .
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 346899999999989999999998888887643222 233456889999999999999999999999999863322 2
Q ss_pred hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh-H-HhhHHHHHHHHh-cCCchHHHHHHHH-----------
Q 019679 104 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVELA-EDRHWRVRLAIIE----------- 169 (337)
Q Consensus 104 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-~~~llp~l~~~~-~d~~~~vr~~~~~----------- 169 (337)
.....++|.+..++.|+ ..+..++..|..++..-.... + ....+|.+.+++ ..++.++...++.
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 23356889999999874 455566666666654311111 1 122445544432 2222222222221
Q ss_pred ---------------------------HhhHhHhhhChh--hHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHh--
Q 019679 170 ---------------------------YIPLLASQLGVG--FFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEF-- 217 (337)
Q Consensus 170 ---------------------------~l~~l~~~~~~~--~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~-- 217 (337)
.+..++++-|+. .+.+ ++.-+...+.. ++++ ..+.++|.++..-
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~-~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVD-FIGDLAKIVSSGDSEE---FVVECLGILANLTIP 521 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHhhcCCcHH---HHHHHHHHHHhcccC
Confidence 222222222111 1222 22222233333 2333 3444444444321
Q ss_pred ChHH--H--HhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCC--ChhHHHHHHHH
Q 019679 218 GPDW--A--MQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDR--VPNIKFNVAKV 287 (337)
Q Consensus 218 ~~~~--~--~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~~~ 287 (337)
+.++ + ...++|.+.+.+.... ..+...++.++|.++..-.... ..+.+++.+..++... +.+.-...+.+
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 1122 2 2368999999987542 4566777888888775433222 2446777777777443 35666677777
Q ss_pred HHHHhhhhcHHHH---HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 288 LQSLIPIVDQSVV---EKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 288 l~~i~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
+.++..+=..... ...+..-|..+..|++++||..|-.+|.-++..
T Consensus 602 f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 602 FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 7777655332211 235677778899999999999999999988764
No 92
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=9.4e-05 Score=63.55 Aligned_cols=255 Identities=14% Similarity=0.084 Sum_probs=156.0
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhh-HhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHIL-PCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 106 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll-~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 106 (337)
.++-.+.+-..|++..+|..|+.+|+..++..+.+. +.+.++ -++..+..+.+..|...++.++..+.+........
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 456666667789999999999999999999976652 333334 45566777778899999999999888766655555
Q ss_pred hhhHHH---HHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHH---HhcCCchHHHHHHHHHhhHhHhh
Q 019679 107 EQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 107 ~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~---~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
..++++ +..++.|.++++|.+++..++.+....|. +.+.+.+...+.. .++|+++.+-.++-..+..
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~---- 413 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT---- 413 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh----
Confidence 555554 45677899999999999999999988763 2333333333322 3578888766555444333
Q ss_pred hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcch-HHHHHHHHHHHHhcc
Q 019679 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAP 254 (337)
Q Consensus 178 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~-~vR~~~~~~l~~l~~ 254 (337)
+++....+.+-..+-+.+ |.... |..+... .++..+.+. ...-.+......++ ..+| .+|.++....+.+..
T Consensus 414 c~p~l~rke~~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~i~~d~l~~~~t~~~~~f-~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 414 CYPNLVRKELYHLFQESL-DTDMA-RFQAFYN--QWCIQLNHIHPDILMLLLTEDQHIF-SSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred cCchhHHHHHHHHHhhhh-HHhHH-HHHHHHH--HHHHHHhhhCHHHHHHHHHhchhhe-ecchHHHHHHHHHHHHHHHH
Confidence 333333333444444333 22221 2222111 111111000 00111111112222 2456 788888877777654
Q ss_pred ccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 255 VMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 255 ~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
...... ....+...+..+..|+.++|+..+.++++.+..
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 443321 233566677788899999999999999987653
No 93
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=7.7e-05 Score=66.73 Aligned_cols=272 Identities=13% Similarity=0.046 Sum_probs=163.7
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
+...+.+-+.+.|+..-..|+.+++.+++.-..+.+...+-..+ ...+..+.||+.++-++-.+.+..++-.-.....
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlL--vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~ 189 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLL--VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWA 189 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHH--hCCcchHHHHHHHHHHHHHHHhcCccccChhhHH
Confidence 34445555556677777778888887776544443333333222 2346677899988888888777655433345667
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----------------------------------HHhhHHHHHHHHh
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------------------------------LSQSLLPAIVELA 156 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------------------------------~~~~llp~l~~~~ 156 (337)
..+..++.|.+-.|-.++..-+..+++...++. +.-.++..+...-
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 778888888877776666666666665543210 0011222222222
Q ss_pred cCCchHHHHHHHHHhhHhHhhhC------------------------------hhhHHHHHHHHHHHHccccchHHHHHH
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLG------------------------------VGFFDDKLGALCMQWLKDKVYSIRDAA 206 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a 206 (337)
.-+++.+|....+++..+..... ...........+-.++.+.+.++|.-+
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLa 349 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLA 349 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhh
Confidence 23344555555555555543322 111223344444455666777777777
Q ss_pred HHHHHHHHHHh-ChHHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHH
Q 019679 207 ANNVKRLAEEF-GPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 284 (337)
Q Consensus 207 ~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 284 (337)
+.++..++..- ..+.+. .-...+...++ +++..+|..++..+=.++..-..+ .++.-+++++..-++.+|...
T Consensus 350 LEsm~~L~ss~~s~davK-~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVK-KHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHHHHHhccchHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHhhcchHHHHHH
Confidence 77777666431 122222 23556666666 788899999999888877644333 566666777777888999999
Q ss_pred HHHHHHHhhhhcHH--HHHHhhhHHHH
Q 019679 285 AKVLQSLIPIVDQS--VVEKSIRPCLV 309 (337)
Q Consensus 285 ~~~l~~i~~~~~~~--~~~~~i~~~l~ 309 (337)
+--.+.+++.+..+ ++.+-++.++.
T Consensus 425 vlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 425 VLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 99999999888765 45555555554
No 94
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.58 E-value=0.00055 Score=66.52 Aligned_cols=131 Identities=19% Similarity=0.147 Sum_probs=99.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
+...+|-.|++++..+...-+.-...+.+...+.+-+.|....||.+|++.+|.+.-..+. ........+..-+.|+.
T Consensus 828 ~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYYDQIIERILDTG 905 (1692)
T ss_pred chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCc
Confidence 4567899999999998876555555677888888888999999999999999988654332 23344566777888999
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHh
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 135 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 135 (337)
..||+=+++.+..++...+.-....++.--++.-..|++..|...+...+..+
T Consensus 906 vsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred hhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999999999999987765444445555555566787777888877776554
No 95
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.56 E-value=0.00039 Score=61.90 Aligned_cols=330 Identities=18% Similarity=0.109 Sum_probs=193.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhCHH-----HHHHhhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPE-----LAIQHILP 72 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~ 72 (337)
|++..+.+.++..++..+...... ..+...+|.+.+++.+++ ..++..+..++..+.+..+.. .....+++
T Consensus 64 ~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~ 143 (678)
T KOG1293|consen 64 DGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIV 143 (678)
T ss_pred CCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHH
Confidence 567777777888888777554432 234567899999999998 899999999999988764221 11112222
Q ss_pred hhHH-----------------------------------------hcCCCcHHHHHHHHHHHHhcCcccChh--------
Q 019679 73 CVKE-----------------------------------------LSSDSSQHVRSALATVIMGMAPILGKD-------- 103 (337)
Q Consensus 73 ~l~~-----------------------------------------l~~d~~~~vr~~a~~~l~~l~~~~~~~-------- 103 (337)
.+.. +....+..+|.++..++..-...+-.+
T Consensus 144 ~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l 223 (678)
T KOG1293|consen 144 KFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLL 223 (678)
T ss_pred HHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHH
Confidence 1111 111235688899999888322221110
Q ss_pred --hHHhhhHH--HHHHhhcCCChhHHHHHHHhHHHhHhhhc-hh--------------hHH-------------------
Q 019679 104 --ATIEQLLP--IFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID--------------LLS------------------- 145 (337)
Q Consensus 104 --~~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~--------------~~~------------------- 145 (337)
.....+.+ .+.++.+|.++.-|-.++.++..+...-. .+ .+.
T Consensus 224 ~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~ 303 (678)
T KOG1293|consen 224 GLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHT 303 (678)
T ss_pred HHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhh
Confidence 11134444 56677888888888888888776654421 00 000
Q ss_pred --------------------hhHHHHHHHHh------cCCchHHHHHHHHHh---hHhHhhhCh---hhHHH-HHHHHHH
Q 019679 146 --------------------QSLLPAIVELA------EDRHWRVRLAIIEYI---PLLASQLGV---GFFDD-KLGALCM 192 (337)
Q Consensus 146 --------------------~~llp~l~~~~------~d~~~~vr~~~~~~l---~~l~~~~~~---~~~~~-~l~~~l~ 192 (337)
...+|...+++ +...++.|.-++... ...+...+. ..+.+ .....+.
T Consensus 304 ~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~ 383 (678)
T KOG1293|consen 304 NVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLM 383 (678)
T ss_pred hhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHc
Confidence 00001111110 111122222211110 011111110 00111 1111111
Q ss_pred HHccccchHHHHHHHHHHHHHHHHhC---hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC---hHHHHhhHH
Q 019679 193 QWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLL 266 (337)
Q Consensus 193 ~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~ 266 (337)
....-.+..++.+++.++..++.... ...-...+...+++.+.|+...+..+++.++..+.--++ ..+.....+
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 12223455677888887777765542 111133455666677799999999999999999875555 345567799
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
..+.+++.++.+.+|..+.+.|..+.-..... .....-...+..+.+|++|.|+..+.+.+.++.
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887554432 222344555667899999999999988887764
No 96
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=0.00013 Score=65.45 Aligned_cols=226 Identities=15% Similarity=0.124 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hhhHHhhHHHHHHHHhcCCch
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHW 161 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~llp~l~~~~~d~~~ 161 (337)
+|-+.++..+..+-..-..++..+.++..+++....++..||..+++-+..+....+ .+.+.+.+...+...+.|..+
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence 344444444444444333333445555555566666677777777777777766433 244446666666666777777
Q ss_pred HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679 162 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240 (337)
Q Consensus 162 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 240 (337)
.||..++.++..+=..-+.+.+ .+...+..++ .|++++||.+++.++.. + ..-.|.+++-..|-+..
T Consensus 141 ~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~v-----d-----nsTlp~IveRarDV~~a 208 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISV-----D-----NSTLPCIVERARDVSGA 208 (892)
T ss_pred hHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhcc-----C-----cccchhHHHHhhhhhHH
Confidence 7777777777766532222111 1223333333 46777777777666542 1 12446666666665544
Q ss_pred HHHH-HHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHH-HhhhhcHHHHHHhhhHHHHhhhCCCCcc
Q 019679 241 YRMT-ILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS-LIPIVDQSVVEKSIRPCLVELSEDPDVD 318 (337)
Q Consensus 241 vR~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~-i~~~~~~~~~~~~i~~~l~~l~~d~~~~ 318 (337)
+|.. .-.++..+ ..... -...-.-.+-..+.|....||.++...+.. +.... ...++..|..+--..+.+
T Consensus 209 nRrlvY~r~lpki-d~r~l--si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~ 280 (892)
T KOG2025|consen 209 NRRLVYERCLPKI-DLRSL--SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSE 280 (892)
T ss_pred HHHHHHHHhhhhh-hhhhh--hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchH
Confidence 4433 33444443 11110 112344455566677777777766655433 21111 124444555444444445
Q ss_pred HHHHHHHHHHH
Q 019679 319 VRFFATQALQS 329 (337)
Q Consensus 319 vr~~a~~al~~ 329 (337)
|+..+.+|+-.
T Consensus 281 vavk~lealf~ 291 (892)
T KOG2025|consen 281 VAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 97
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.54 E-value=0.00052 Score=60.61 Aligned_cols=320 Identities=16% Similarity=0.159 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHHhhCHH-------HHHH-hhhHhh
Q 019679 8 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRILNPE-------LAIQ-HILPCV 74 (337)
Q Consensus 8 R~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----d~~~~vR~~a~~~l~~~~~~~~~~-------~~~~-~ll~~l 74 (337)
.+.+.+++.+++. .......+.+.+...+. +.+..+-...+.++..+.+....+ .+.+ .++|.+
T Consensus 19 ~~~~L~~l~~ls~---~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l 95 (415)
T PF12460_consen 19 YERILEALAALST---SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRL 95 (415)
T ss_pred HHHHHHHHHHHHC---ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHH
Confidence 4445566666553 22223334444444432 225667777778887776654222 2222 266666
Q ss_pred HHhcC-----CC--cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc----------CCC--hhHHHHHHHhHHHh
Q 019679 75 KELSS-----DS--SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK----------DEF--PDVRLNIISKLDQV 135 (337)
Q Consensus 75 ~~l~~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------d~~--~~vr~~a~~~l~~l 135 (337)
.+... +. ++.+=..+...+..+...++.+... .++..+..++. +.. +......+.-+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~-~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 174 (415)
T PF12460_consen 96 FELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ-EILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAI 174 (415)
T ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHccccccCCCCccccccccccccHHHHHHHH
Confidence 55432 22 2566666777777777766654432 23333333332 111 11122222223333
Q ss_pred HhhhchhhH---HhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHHHHH
Q 019679 136 NQVIGIDLL---SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNV 210 (337)
Q Consensus 136 ~~~~~~~~~---~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l 210 (337)
...+.++.. .+.++..+.... ...++..|..+++.+..++..+......+.++..+...+ .......|..++..+
T Consensus 175 l~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (415)
T PF12460_consen 175 LCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEIL 254 (415)
T ss_pred HHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHH
Confidence 333333221 123555555553 445588999999999999988766555556666666666 566778888999999
Q ss_pred HHHHHHh--ChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc---------------ChHHHHhhHHHHHHhhc
Q 019679 211 KRLAEEF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---------------GSEITCSQLLPVVINAS 273 (337)
Q Consensus 211 ~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---------------~~~~~~~~l~~~l~~~l 273 (337)
..+.+++ ..+.....++..+.+++.+ ..+...+..+++.+..-. .+..+...++|.+.+..
T Consensus 255 ~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~ 332 (415)
T PF12460_consen 255 IWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF 332 (415)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH
Confidence 8888775 1122244577888888888 446677778887775331 12234567899999999
Q ss_pred cCCChhHHHHHHHHHHHHhhhhcHHHH---HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 274 KDRVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 274 ~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
.+...+.|.+...+|..+.++.+.+.+ ...++|.|.+.+.-++.+++..+.+.+..+..-
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 888888999999999999999887633 467999999988878889999999988877653
No 98
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.53 E-value=0.00012 Score=65.14 Aligned_cols=261 Identities=13% Similarity=0.098 Sum_probs=146.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
-...++.... .++..++.|+..+..+.+.++.- .+..+..+..+++|.+..||..|++.|..++..-++ ....+.
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kva 98 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVA 98 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHH
Confidence 3444445554 36889999999999999887663 244567777899999999999999999999974332 346788
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh------hhHH
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV------GFFD 184 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~ 184 (337)
.++.+++..+++..+..+=++|..+.+.-.... ...++..+..- ...+..+|.-++..+..-...++. +...
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t-L~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT-LTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 999999998888888888888877776532222 23333333321 234567898888877554444332 2344
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHHHhhHHHHHHHhhc-C-------cc--hHHHHHHHHHHHH
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMIN-N-------PH--YLYRMTILQAISL 251 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~-~-------~~--~~vR~~~~~~l~~ 251 (337)
..++..+.+.|.|-...--......|..+- .++ ...-.+.+++.+.+... + +. .+...+.-.++..
T Consensus 177 ~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk-~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~ 255 (556)
T PF05918_consen 177 EFIVDEIKKVLQDVTAEEFELFMSLLKSLK-IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPF 255 (556)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHTSG-G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhCc-cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHH
Confidence 567777778888844332223233333221 111 12224567777765542 1 11 1233334444445
Q ss_pred hccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679 252 LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 299 (337)
Q Consensus 252 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~ 299 (337)
++.......|.+++..-++.-+.+-....|...++.++.++...+...
T Consensus 256 fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 256 FSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp -BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T
T ss_pred hcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc
Confidence 555555544555555555555566667888899999999999888644
No 99
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00022 Score=64.41 Aligned_cols=295 Identities=12% Similarity=0.108 Sum_probs=164.3
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHH-hcCCCcHHHHHHHHHHHHhcCc--------
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAP-------- 98 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-l~~d~~~~vr~~a~~~l~~l~~-------- 98 (337)
...++|.+.+++++.+.-||+.|+-++..+-.... ........++.. +..+.++..++.|.-.|....+
T Consensus 132 lepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 132 LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence 45689999999999999999999998888766521 001111111111 2334444444444433332211
Q ss_pred -------ccChh-----------------hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679 99 -------ILGKD-----------------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 154 (337)
Q Consensus 99 -------~~~~~-----------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~ 154 (337)
.+++. ......+..+..++..+++.|+-.|..++..+... +..+ +..-..+..
T Consensus 210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~ 286 (948)
T KOG1058|consen 210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTAL-KAAASTYID 286 (948)
T ss_pred hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHH
Confidence 01100 00123445555566666677776666665555433 1111 222222333
Q ss_pred Hh-cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh
Q 019679 155 LA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 233 (337)
Q Consensus 155 ~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 233 (337)
++ +.++-.++...+.-+..+. .+.+...+.++--++..|..++-+||.-++...-.+......+.+...+-..+...
T Consensus 287 l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT 364 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT 364 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence 32 3334445555555555554 22233445566667788999999999998887666665443333222222222222
Q ss_pred h---cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh
Q 019679 234 I---NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 310 (337)
Q Consensus 234 ~---~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~ 310 (337)
- .+.+...|+..++.+...+-.+.. +...++|.++..++|.++.--...+..+....+.+++=. ...+-..+..
T Consensus 365 ~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-~~ii~~l~~~ 441 (948)
T KOG1058|consen 365 HNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-ASIIEKLLET 441 (948)
T ss_pred cccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHh
Confidence 1 235577899999999988766543 467899999999999998776666666666666655321 1222222222
Q ss_pred hhCCCCccHHHHHHHHHHHHHH
Q 019679 311 LSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 311 l~~d~~~~vr~~a~~al~~l~~ 332 (337)
+-.=.+..+-..|.+.+|....
T Consensus 442 ~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 442 FPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred hhhhcccccchhHHHHHHHHHh
Confidence 3333455566666666665543
No 100
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00095 Score=62.30 Aligned_cols=322 Identities=16% Similarity=0.166 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---H------HHHHH----hhhHh
Q 019679 7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---P------ELAIQ----HILPC 73 (337)
Q Consensus 7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~------~~~~~----~ll~~ 73 (337)
+|-....++..+...--|+ .|+.+++....++++++...-..++.++..+++... . ..... .++..
T Consensus 105 iRvql~~~l~~Ii~~D~p~-~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~ 183 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKADYPE-QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQI 183 (1010)
T ss_pred HHHHHHHHHHHHHhcCCcc-cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 4444455554555444443 368999999999999999999999999999987643 1 11223 33444
Q ss_pred hHHhcCCCcH---HHHHHHHHHHHhcCc-ccChhhH----HhhhHHHHHHhhcC-----------------CChhHHHHH
Q 019679 74 VKELSSDSSQ---HVRSALATVIMGMAP-ILGKDAT----IEQLLPIFLSLLKD-----------------EFPDVRLNI 128 (337)
Q Consensus 74 l~~l~~d~~~---~vr~~a~~~l~~l~~-~~~~~~~----~~~l~~~l~~~l~d-----------------~~~~vr~~a 128 (337)
...++.+++. ...+..++.+...+. .++.+.. ....+..+...++- ....+++=|
T Consensus 184 ~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa 263 (1010)
T KOG1991|consen 184 FNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWA 263 (1010)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHH
Confidence 4455666553 344445554444332 2222222 22334444444421 123355668
Q ss_pred HHhHHHhHhhhchh--------hH----H----hhHHHHHHHHhc---CCch---HHHHHHHHHhhHhHhhhChhhHHHH
Q 019679 129 ISKLDQVNQVIGID--------LL----S----QSLLPAIVELAE---DRHW---RVRLAIIEYIPLLASQLGVGFFDDK 186 (337)
Q Consensus 129 ~~~l~~l~~~~~~~--------~~----~----~~llp~l~~~~~---d~~~---~vr~~~~~~l~~l~~~~~~~~~~~~ 186 (337)
+..+.++.+..|.. .+ . +.++..+.+.+. ..-| +|-.-++..+... .........
T Consensus 264 ~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~---Vs~~~twkl 340 (1010)
T KOG1991|consen 264 LHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQC---VSHASTWKL 340 (1010)
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh---ccHHHHHHH
Confidence 88888888877631 11 1 122222222221 1111 2222222222222 222222222
Q ss_pred HHH--------HHHHHc-----------cccchHHHH-------------HHHHHHHHHHHHhChHHHHhhHHHHHHHhh
Q 019679 187 LGA--------LCMQWL-----------KDKVYSIRD-------------AAANNVKRLAEEFGPDWAMQHIVPQVLEMI 234 (337)
Q Consensus 187 l~~--------~l~~~l-----------~d~~~~vr~-------------~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 234 (337)
+.| +++.++ +|+..-+|. +|...+-.++..-|++ ..+.+++.+.+.+
T Consensus 341 l~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke-~l~k~l~F~~~Il 419 (1010)
T KOG1991|consen 341 LKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKE-TLPKILSFIVDIL 419 (1010)
T ss_pred hhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchh-hhhhHHHHHHHHH
Confidence 222 222222 244445554 6666677776666555 3566778887777
Q ss_pred c------C--cchHHHHHHHHHHHHhccccChH-----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh-hhhcHHHH
Q 019679 235 N------N--PHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI-PIVDQSVV 300 (337)
Q Consensus 235 ~------~--~~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~-~~~~~~~~ 300 (337)
. . .+++.+..|+..+++++..+.+. .+...+.++++..+.++.--.|..|+..++.++ ..+..+..
T Consensus 420 ~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~ 499 (1010)
T KOG1991|consen 420 TRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN 499 (1010)
T ss_pred HhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH
Confidence 6 2 35788899999999998665432 233356778888889999999999999999998 55666655
Q ss_pred HHhhhHHHHhhh-CCCCccHHHHHHHHHHHHHHh
Q 019679 301 EKSIRPCLVELS-EDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 301 ~~~i~~~l~~l~-~d~~~~vr~~a~~al~~l~~~ 333 (337)
....+....+++ +|++-.||..|+-||..+.+.
T Consensus 500 l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 500 LSEALELTHNCLLNDNELPVRVEAALALQSFISN 533 (1010)
T ss_pred HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence 566666666654 488999999999999988765
No 101
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00039 Score=56.92 Aligned_cols=318 Identities=14% Similarity=0.076 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhhhHhhHHhcCCCcH
Q 019679 11 VANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQ 83 (337)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-------~~~ll~~l~~l~~d~~~ 83 (337)
++.++..+.+...+....+.+.|.+...+-.++..|+..++..++.+.+.++...+ ...++|.+...+..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 67777777777766666778999999999899999999999999999998875422 34477888888888999
Q ss_pred HHHHHHHHHHHhcCcccChh--hHHhhhHH--HHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHH-
Q 019679 84 HVRSALATVIMGMAPILGKD--ATIEQLLP--IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVE- 154 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~--~~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~- 154 (337)
.|-+++.+.+..++..-..- .+...+.. .+.++....++-+|..+..-+-.+.+. +++. -...++..+..
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHH
Confidence 99999999998887521100 00011111 111222233444555444444444432 2221 12234444443
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhChhhHH--HHHHHHHHHHcc--ccchHHHHHHHHHHHHHHHHhChHHH--------
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWA-------- 222 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~-------- 222 (337)
+-..++.-|+..+++....++..-....|. +-+++.+.+.+. |..+--+-.+....++ .+|++.+
T Consensus 222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgk---ffgkeaimdvseeai 298 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK---FFGKEAIMDVSEEAI 298 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH---HhcchHHhhcCHHHH
Confidence 334467778888888888887654322221 234555544443 3333333334444444 3444322
Q ss_pred HhhH---HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH-HhhH---HHHHHhhccCCC-hhHHHHHHHHHHHHhhh
Q 019679 223 MQHI---VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT-CSQL---LPVVINASKDRV-PNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 223 ~~~l---~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l---~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~ 294 (337)
.+.+ +.-..+++...+..-..+++.++|.++........ ...- ...++....|.+ ..-+.+++++|..|+..
T Consensus 299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 2222 22223444445566778899999999766543322 2211 122223333444 44566889999999865
Q ss_pred hcH--H---------HHHHhh------------hHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 295 VDQ--S---------VVEKSI------------RPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 295 ~~~--~---------~~~~~i------------~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
+.. + .....+ ..++...+.-+.+++|..+.+.+..++.
T Consensus 379 lrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 379 LRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 421 1 011111 1223334556789999999988887753
No 102
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.48 E-value=2.9e-05 Score=69.04 Aligned_cols=258 Identities=13% Similarity=0.137 Sum_probs=139.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
.+..+++.+++.|+...+.++.-. .+.+..+..+++|++..||..|+..|..++... ..+...+...|.++++..+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~--~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ--EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH--HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhccc
Confidence 357789999999999988877543 567888999999999999999999999998863 2345678888888999888
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh--cCCChhHHHHHHHhHHHhHhhhch------hhHHhhHHHHHHH
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVE 154 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~llp~l~~ 154 (337)
+.....+-++|..+...-+ ...+-.++.... ...+..+|..+++-+..-+..++. +.....+...+.+
T Consensus 110 ~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikk 185 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKK 185 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHH
Confidence 8777777777777765222 233334444443 245678999999888654444433 2344567777777
Q ss_pred HhcCCchHHHHHHHHHhhHhHhh--hChhhHHHHHHHHHHHHcc-c-----cchHHHHHHHHHHHHHHHHhCh----H--
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWLK-D-----KVYSIRDAAANNVKRLAEEFGP----D-- 220 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~-d-----~~~~vr~~a~~~l~~~~~~~~~----~-- 220 (337)
.++|-...-=....+.|..+-.. ........++++++.+-.. | .+++.-...+.++..-...+.. .
T Consensus 186 vL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskf 265 (556)
T PF05918_consen 186 VLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKF 265 (556)
T ss_dssp HCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHH
T ss_pred HHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHH
Confidence 77773322111222222222221 1112234567777765442 1 1223222333333332222211 1
Q ss_pred --HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhc
Q 019679 221 --WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 273 (337)
Q Consensus 221 --~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 273 (337)
.+...++|.+.++ ....|.-.+..+..++...+... ...++|.+...|
T Consensus 266 v~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 266 VNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp HHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 2234444543333 34566678888888888887543 444445555444
No 103
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.48 E-value=9.8e-05 Score=62.00 Aligned_cols=205 Identities=15% Similarity=0.149 Sum_probs=139.9
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhh-hchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC----hhh
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGF 182 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~ 182 (337)
.-.+..+.++....|.+++..+..+... +-.+.+ ...+++.+.+.++-....-+..++..++.++-.+| .+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 3444555677889999999998776643 333333 34577777777766655677778888888887765 344
Q ss_pred HHHHHHHHHHHHccccch--HHHHHHHHHHHHHHHHhChHH-HHh---hHHHHHH--Hhhc-C---------cchHHHHH
Q 019679 183 FDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDW-AMQ---HIVPQVL--EMIN-N---------PHYLYRMT 244 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~-~~~---~l~~~l~--~~~~-~---------~~~~vR~~ 244 (337)
+.+.+.|.+.+.+.|... .+|.+++.+|+.+.-..+.+. -.. ..+..+. ...+ + ++..+..+
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 677899999999988654 678888888887665433321 112 1223111 1111 1 23578999
Q ss_pred HHHHHHHhccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---H---HHHHhhhHHHHhhhCCC
Q 019679 245 ILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---VVEKSIRPCLVELSEDP 315 (337)
Q Consensus 245 ~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~---~~~~~i~~~l~~l~~d~ 315 (337)
|+.+.+.+...++.. ......+|.+..+|..++..||.+|-.+|+-+.+.... + ...+.+...+..|..|.
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 999999998877753 23455789999999999999999999999999776543 1 12356777788887775
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.0003 Score=57.55 Aligned_cols=280 Identities=14% Similarity=0.120 Sum_probs=166.8
Q ss_pred HHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH-------HhhhHHHHHHhhcCCCh
Q 019679 50 AAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT-------IEQLLPIFLSLLKDEFP 122 (337)
Q Consensus 50 a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~ 122 (337)
++.+|..+.+..-+......++|-+...+..++..|+..+++.++.+.+.+..... ...++|.+..++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 67788888777666666677888888888888999999999999999887653221 35788999999999999
Q ss_pred hHHHHHHHhHHHhHhhhch-hhH-HhhHHHH--HHHHhcCCchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHc
Q 019679 123 DVRLNIISKLDQVNQVIGI-DLL-SQSLLPA--IVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWL 195 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~-~~~-~~~llp~--l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l 195 (337)
+|-++|++++..++..-.. +.+ ...++.. +.++...-+.-+|..+.+.+..+...-. .+....-++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999988765211 111 0111111 1122222334456666666665544321 1122334666666555
Q ss_pred cc-cchHHHHHHHHHHHHHHHHh-ChHHH-HhhHHHHHHHhhc--CcchHHHHHHHHHHHHhccccChHHH--------H
Q 019679 196 KD-KVYSIRDAAANNVKRLAEEF-GPDWA-MQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSEIT--------C 262 (337)
Q Consensus 196 ~d-~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~l~~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~~~--------~ 262 (337)
+- ++.-|+..++.....+...- |.++. ...++..+++.+. |..+--+..++.-+ ...+|++.. .
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgf---gkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF---GKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH---HHHhcchHHhhcCHHHHH
Confidence 54 66678888888777776543 33433 2357777777775 23333333233333 333333221 1
Q ss_pred h---hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhh-hHHHHhh---hCCCC-ccHHHHHHHHHHHHHH
Q 019679 263 S---QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSI-RPCLVEL---SEDPD-VDVRFFATQALQSKDQ 332 (337)
Q Consensus 263 ~---~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i-~~~l~~l---~~d~~-~~vr~~a~~al~~l~~ 332 (337)
. ..++-.+.+..-.++....+|+.+++.++..........+- .|...++ ..|.+ ..-+..+..+|..++.
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 1 22333455566667788999999999998766443222222 1233332 12322 2345566777766654
No 105
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2e-05 Score=70.62 Aligned_cols=261 Identities=14% Similarity=0.097 Sum_probs=158.1
Q ss_pred hHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679 31 VVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109 (337)
Q Consensus 31 l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 109 (337)
+...+.+.+.+ +++.||..++-.++-.+=.... ..+...++..+...+...-+++.-++|.+.-.-.. .+.
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----~ea 485 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----QEA 485 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----HHH
Confidence 55566666644 4677888887766644322222 23445556665555555556666666665432222 223
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679 110 LPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 188 (337)
Q Consensus 110 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 188 (337)
+.-+.....+. ...+.+...-++.-+.- |.+ +..=|.+.+++.|.++..|.+..-.+..---.-|.. ..+
T Consensus 486 iedm~~Ya~ETQHeki~RGl~vGiaL~~y--grq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kai 556 (929)
T KOG2062|consen 486 IEDMLTYAQETQHEKIIRGLAVGIALVVY--GRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAI 556 (929)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHh--hhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhH
Confidence 33344444433 34455554444443322 211 234577788999999999988665443322222332 234
Q ss_pred HHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679 189 ALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLL 266 (337)
Q Consensus 189 ~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 266 (337)
..+++ ..+|.+..||.+|+.+||-++-. ++ ..+|..++++.+ -|++||..++.++|..+..-|... -+
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~-dp-----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai 626 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFR-DP-----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AI 626 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEec-Ch-----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HH
Confidence 44444 47899999999999999976532 22 345566666654 469999999999999888777653 34
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCcc
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVD 318 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~ 318 (337)
..+..+.+|+..-||+.|+-+++.|.-...+. .-..-+...+.+...|+..+
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 55666778999999999999988886433221 11234555566666666544
No 106
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=3.7e-05 Score=68.71 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=121.5
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 106 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 106 (337)
..++-++.+..+.++..||...+..+..+.+... ++.+...+...+..-+.|..|.||..|..+|..+-..-+++.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc--
Confidence 4566677777788999999999999998887332 344556666777777889999999999999998875333222
Q ss_pred hhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHH-hhHhHhhhChhhHH
Q 019679 107 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY-IPLLASQLGVGFFD 184 (337)
Q Consensus 107 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~-l~~l~~~~~~~~~~ 184 (337)
-.+...+..++ +|++++||++++.++..= +.-+|.+.+...|-+..+|..+.+- +..+ .... ...
T Consensus 162 ~~v~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~--lsi 228 (892)
T KOG2025|consen 162 CPVVNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-DLRS--LSI 228 (892)
T ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhh--hhH
Confidence 23455555555 489999999998876432 4456888888888888888777653 3344 2211 123
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHH
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKR 212 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 212 (337)
++-+..+-..+.|.+..|+.++...+..
T Consensus 229 ~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 229 DKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 4566677788999999999999988875
No 107
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.44 E-value=6.4e-07 Score=54.32 Aligned_cols=53 Identities=23% Similarity=0.157 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 239 YLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
|++|.+++.+|+.+++..+. ..+.+.++|.+..++.|+++.||.+|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67788888888776655543 235667777888888877778888888777754
No 108
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.43 E-value=0.0001 Score=62.91 Aligned_cols=182 Identities=12% Similarity=0.112 Sum_probs=129.8
Q ss_pred HHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcC-CchHHHHHHHHHhhHhHhhhChhh--HHHH
Q 019679 113 FLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDK 186 (337)
Q Consensus 113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ 186 (337)
+.++-.++..+-|+.|+..+..+...-+.. .....++-.+.+.+.| ++...|..++..+..++..-.... ..+.
T Consensus 292 l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ 371 (516)
T KOG2956|consen 292 LKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI 371 (516)
T ss_pred HHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH
Confidence 333333445677888888777766543332 2335677777888888 888899999999999887654433 2344
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH---Hh
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CS 263 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~ 263 (337)
.+.-+++.-+|....|-..|......+...+.+......+.|.|.. .++..-.+++..+..+.+.+..+.. .+
T Consensus 372 ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 372 AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 5556667778888877666666655555555555444556666655 3445556777888898888887754 45
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
.+.|.+.+.....+..||+.++-||..+...+|.+
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 78999999999999999999999999999999954
No 109
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.41 E-value=0.00016 Score=60.66 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=129.0
Q ss_pred HHHhcCCchHHHHHHHHHhhHhHhh-hChhh---HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC----hHHHHh
Q 019679 153 VELAEDRHWRVRLAIIEYIPLLASQ-LGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG----PDWAMQ 224 (337)
Q Consensus 153 ~~~~~d~~~~vr~~~~~~l~~l~~~-~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~ 224 (337)
...+.+++...|..++..+..+... +-.+. ....+++.+.+.++-....-+..|++.++.++-.+| .+.+.+
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 3445677788999999888776543 33322 235678888888887777777788888998887766 244566
Q ss_pred hHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChHH-HHh---hHHHHHHhh--c-c---------CCChhHHHHHHH
Q 019679 225 HIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEI-TCS---QLLPVVINA--S-K---------DRVPNIKFNVAK 286 (337)
Q Consensus 225 ~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~-~~~---~l~~~l~~~--l-~---------d~~~~vr~~a~~ 286 (337)
.+.|.+...+.|.+ ...|.+++.+++.++-..+.+. -.. ..+..++.. . . .+++.+..+|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 78899999998765 5678888888887654433221 122 233322221 1 1 123579999999
Q ss_pred HHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 287 VLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 287 ~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+++-+...++.. ...+..+|.|..++..++.+||..|-++|..+-....
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999888774 3345578889999999999999999999998876543
No 110
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.6e-05 Score=68.46 Aligned_cols=225 Identities=15% Similarity=0.080 Sum_probs=135.3
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC-
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR- 159 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~- 159 (337)
+++.||..+|-.+|-.+---. ..++...+.+.+...+...-++|.-+++-+.-.... +..+.-+....++.
T Consensus 426 ~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----~eaiedm~~Ya~ETQ 497 (929)
T KOG2062|consen 426 ENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----QEAIEDMLTYAQETQ 497 (929)
T ss_pred cchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----HHHHHHHHHHhhhhh
Confidence 355666666665554332111 123444444444443444444444555544322111 22333333343332
Q ss_pred chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh-hcCcc
Q 019679 160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPH 238 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 238 (337)
+.++..+..-.+..+ .+|.. +..-|.+.+++.|.++-+|....-+++.-...-|+.. .+..++.. .+|.+
T Consensus 498 Heki~RGl~vGiaL~--~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----air~lLh~aVsD~n 568 (929)
T KOG2062|consen 498 HEKIIRGLAVGIALV--VYGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----AIRRLLHVAVSDVN 568 (929)
T ss_pred HHHHHHHHHHhHHHH--Hhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----hHHHhhcccccccc
Confidence 233333333222222 12222 3466778889999999999998877765444444443 33444444 67899
Q ss_pred hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC-CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679 239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV 317 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~ 317 (337)
..||.+|+.++|.+.- -.+...|...++|.+ -++.||..++-+|+..+..-|.. ..+.+|..+..|+..
T Consensus 569 DDVrRaAVialGFVl~------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~ 638 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLF------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVD 638 (929)
T ss_pred hHHHHHHHHHheeeEe------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHH
Confidence 9999999999988752 123455666666654 45899999999999998877753 556677788889999
Q ss_pred cHHHHHHHHHHHHHH
Q 019679 318 DVRFFATQALQSKDQ 332 (337)
Q Consensus 318 ~vr~~a~~al~~l~~ 332 (337)
-||+.|+-+++.+.-
T Consensus 639 fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 639 FVRQGALIALAMIMI 653 (929)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887643
No 111
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0001 Score=67.41 Aligned_cols=184 Identities=15% Similarity=0.170 Sum_probs=134.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 108 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 108 (337)
-+......+.|+..-+|.+++..+..+.+.-.+. .....++......+.|.++.|-..+++.+..+++..+ +.
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~ 802 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----ED 802 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hh
Confidence 3556666778999999999999999999854333 4556688888999999999999999998888887654 44
Q ss_pred hHHHHHH-hhc---CCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---
Q 019679 109 LLPIFLS-LLK---DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--- 179 (337)
Q Consensus 109 l~~~l~~-~l~---d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--- 179 (337)
++|.+.+ +.+ ...++.|..+=+++..+++..|+= .+...++..+.....|++..-|.+++..++.+++...
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 5565555 222 222455555557777777776642 2335677777888889988999999999999998763
Q ss_pred hhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChH
Q 019679 180 VGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 180 ~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
.+ +..++...+.. .-.|.+..||.+|+..+.......|.+
T Consensus 883 sd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 883 SD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred hH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence 33 33333333333 345889999999999999998877744
No 112
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.34 E-value=1.4e-06 Score=52.87 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 278 PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 278 ~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
|.||.+|+.+|+.++...+.. .+...++|.|..+++|++++||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999999987665543 46688999999999999999999999999864
No 113
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00025 Score=60.90 Aligned_cols=329 Identities=14% Similarity=0.154 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCc---ccchHH---------HHHHhcCCChHHHHHHHHHhHHHHHHhh----------C
Q 019679 5 WRVRYMVANQLYELCEAVGPEPT---RSDVVP---------AYVRLLRDNEAEVRIAAAGKVTKICRIL----------N 62 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~---~~~l~~---------~l~~~~~d~~~~vR~~a~~~l~~~~~~~----------~ 62 (337)
.+||..+...+....+.++.... |+-++| .+.-.+.|+++..|..|+..+..+.... +
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 57999999999998887765432 222332 2234568999999999999888876531 1
Q ss_pred HHH-------HHHhhhH---hh-HHhcCCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcCCChhHHHH
Q 019679 63 PEL-------AIQHILP---CV-KELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLN 127 (337)
Q Consensus 63 ~~~-------~~~~ll~---~l-~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~ 127 (337)
+.. +...+.. .+ ..+..+.++.+-..+++++..+....+-+.. .-++...+..+++.+++.||..
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 110 0111111 11 2233456667778889999988876653332 2456777888999999999999
Q ss_pred HHHhHHHhHhhhch--h-----------------------hHHhhH--HHHHHHH------------------------h
Q 019679 128 IISKLDQVNQVIGI--D-----------------------LLSQSL--LPAIVEL------------------------A 156 (337)
Q Consensus 128 a~~~l~~l~~~~~~--~-----------------------~~~~~l--lp~l~~~------------------------~ 156 (337)
++..++.++..-.+ + .+ +.+ =|...+. .
T Consensus 170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWW-KKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHH-HhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 99999888754211 1 00 000 0000000 0
Q ss_pred cCCc----------------hHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679 157 EDRH----------------WRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 219 (337)
Q Consensus 157 ~d~~----------------~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 219 (337)
...+ ..+|-.+++.+..++..+|.-. +.-++...+...+.|..+.+...+.+.+..++...+.
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~ 328 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQ 328 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 1111 2367778888888888876533 4456777777888999999999999999998877653
Q ss_pred HH----H-HhhHHHHHHHhhc---------Cc-chHHHHHHHHHHHHhccc-c-ChHHHHhhHHHHHHhhccCCC-hhHH
Q 019679 220 DW----A-MQHIVPQVLEMIN---------NP-HYLYRMTILQAISLLAPV-M-GSEITCSQLLPVVINASKDRV-PNIK 281 (337)
Q Consensus 220 ~~----~-~~~l~~~l~~~~~---------~~-~~~vR~~~~~~l~~l~~~-~-~~~~~~~~l~~~l~~~l~d~~-~~vr 281 (337)
+. . .+.....+..++. |+ ......+.+.++..+... + +-..-.....+.++....|.. ..||
T Consensus 329 ~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~ 408 (728)
T KOG4535|consen 329 QYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVK 408 (728)
T ss_pred hcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHH
Confidence 21 1 1122222333322 11 234555566666665321 1 111112356677777766554 5688
Q ss_pred HHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 282 FNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 282 ~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
.+|+++++-..-+.+.. .+.......+..-+.|+.-++|..++.+++.+.+++
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL 464 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL 464 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH
Confidence 89999888776655543 334445555556667777778888888888777654
No 114
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.32 E-value=0.00017 Score=61.59 Aligned_cols=186 Identities=15% Similarity=0.063 Sum_probs=121.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCcccChhh--
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDA-- 104 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-- 104 (337)
+...+.+.-.++..+-|+.|...+..+.-.-+- +++...++..+.+.+.| .+...|+.|+..|..+++.-+...
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 334444444555667788887766655433222 23445566666677777 788889999999999887555322
Q ss_pred HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH-
Q 019679 105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF- 183 (337)
Q Consensus 105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~- 183 (337)
..+..+--+++.-+|..++|-..|.+....++....+..-...+-|.+.. .+...-..++..+..+.+.+..+..
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHH
Confidence 12334455666667887777777766655554444433333444454443 4444555666778888888877653
Q ss_pred --HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 184 --DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 184 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
.+.+.|.+++.....+..||+.|+-+|..+...+|.+
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 4568888888888889999999999999988888744
No 115
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00056 Score=62.73 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=96.4
Q ss_pred HHHHHHHHHHh--CCCC-----cccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhH-HhcC
Q 019679 12 ANQLYELCEAV--GPEP-----TRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPEL---AIQHILPCVK-ELSS 79 (337)
Q Consensus 12 ~~~l~~~~~~~--~~~~-----~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~-~l~~ 79 (337)
++++.+++..+ |.+. ..+.++|.+..+++++ +.++-..|+.++..+++.++... +....+|.+. +++.
T Consensus 186 leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~ 265 (1051)
T KOG0168|consen 186 LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT 265 (1051)
T ss_pred HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence 45555555543 3322 2357999999999875 69999999999999999998762 2334666543 4555
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhc
Q 019679 80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE 157 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~ 157 (337)
-.--.|-+.+++++..|....+..+....-+-.++.++.=-+-.+++.|+.....+++.+..+.+ .-..+|.|..+++
T Consensus 266 IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs 345 (1051)
T KOG0168|consen 266 IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLS 345 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHh
Confidence 55556777777777777766655544433333333333211234555566666666666554432 2345555555555
Q ss_pred CCchHHHHHHHHHhhHhHh
Q 019679 158 DRHWRVRLAIIEYIPLLAS 176 (337)
Q Consensus 158 d~~~~vr~~~~~~l~~l~~ 176 (337)
..+.++-..++-++..++.
T Consensus 346 ~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 346 YQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred hccchhHHHHHHHHHHHHH
Confidence 4444444444444444433
No 116
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0034 Score=58.76 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHhcC------C--ChHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhH
Q 019679 9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLR------D--NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVK 75 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------d--~~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~ 75 (337)
-++...+..+++.-|++.. +.+++++.+.+. . .++.-+..|+.+++.+++.+.++ .+...+.+.+.
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 4566667777776666663 556666666665 2 35677888999999999877654 33444566666
Q ss_pred HhcCCCcHHHHHHHHHHHHhcC-cccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMA-PILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPA 151 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~ 151 (337)
...+++....|.-||+.++.++ ..+.........+....+.+. |++--||..|+-++..+...... +.+.+.+-|.
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 7889999999999999999999 455555555667777777777 88889999999999988876542 2344444444
Q ss_pred HHHHh
Q 019679 152 IVELA 156 (337)
Q Consensus 152 l~~~~ 156 (337)
+.+++
T Consensus 549 mq~lL 553 (1010)
T KOG1991|consen 549 MQELL 553 (1010)
T ss_pred HHHHH
Confidence 44443
No 117
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.29 E-value=0.002 Score=65.60 Aligned_cols=306 Identities=10% Similarity=0.052 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHhCCCC--ccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HH-----HHHHhhhHhhH
Q 019679 8 RYMVANQLYELCEAVGPEP--TRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PE-----LAIQHILPCVK 75 (337)
Q Consensus 8 R~~~~~~l~~~~~~~~~~~--~~~----~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~-----~~~~~ll~~l~ 75 (337)
|....+.+.+++.+-.... .|. .+-+++.+...+++..++..|+..|.+++-.+- .+ .+.+.++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 5566777777776655432 233 356666666566778899999998888776432 22 23344555444
Q ss_pred H-hcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-c---h--hhHHh
Q 019679 76 E-LSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-G---I--DLLSQ 146 (337)
Q Consensus 76 ~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~---~--~~~~~ 146 (337)
. +....+..||...++++..+....+..... +.++.++.....++++.+-..+.+.+..+.+.. + . .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 4 345667799999999999988765543322 456677777777888888888999888776542 1 1 11223
Q ss_pred hHHHHHHHHhcCC-chHHHHHHHHHhhHhHhhh-----------------------------------ChhhHHHHHHHH
Q 019679 147 SLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL-----------------------------------GVGFFDDKLGAL 190 (337)
Q Consensus 147 ~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~~~ 190 (337)
.++..+.++.+.. +..+-..++..+..++..+ +.+......+|+
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4555555555432 2333333444444332211 111112334555
Q ss_pred HHH---HccccchHHHHHHHHHHHHHHHHhChHH-------H-HhhHHHHHHHhhc----------------------Cc
Q 019679 191 CMQ---WLKDKVYSIRDAAANNVKRLAEEFGPDW-------A-MQHIVPQVLEMIN----------------------NP 237 (337)
Q Consensus 191 l~~---~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------~-~~~l~~~l~~~~~----------------------~~ 237 (337)
+.. ...|+..+||..|+..|=++....|... + ...++|.+..+-. +.
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 544 4679999999999999988887776531 2 3345555433211 11
Q ss_pred chHHHHHHHHHHHHhccccChH-----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHH
Q 019679 238 HYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLV 309 (337)
Q Consensus 238 ~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~ 309 (337)
+.+...+...++..+...+..- ...+.++..+..+...++..+-+.+..+|..+....|.. .....+...+.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 1234677777777776554432 234455566666778888888888999999998766643 33455666666
Q ss_pred hhhC
Q 019679 310 ELSE 313 (337)
Q Consensus 310 ~l~~ 313 (337)
++++
T Consensus 1509 ~lf~ 1512 (1780)
T PLN03076 1509 EAAN 1512 (1780)
T ss_pred HHHH
Confidence 5544
No 118
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=98.29 E-value=0.00022 Score=66.71 Aligned_cols=217 Identities=16% Similarity=0.181 Sum_probs=117.3
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE- 157 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~- 157 (337)
..+..|.....++...+. .. -+..+.+++.... ..-....+..+........ ..++..+..+++
T Consensus 376 ~~~~~r~~~lDal~~aGT----~~----av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~ 442 (618)
T PF01347_consen 376 KKEQARKIFLDALPQAGT----NP----AVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT-----EELLKELFELAKS 442 (618)
T ss_dssp --HHHHHHHHHHHHHH-S----HH----HHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHHcCC----HH----HHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhC
Confidence 466788888888888775 22 2233444443322 2222223333333332222 233344444433
Q ss_pred ---CCchHHHHHHHHHhhHhHhhhChh------------h----HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC
Q 019679 158 ---DRHWRVRLAIIEYIPLLASQLGVG------------F----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 218 (337)
Q Consensus 158 ---d~~~~vr~~~~~~l~~l~~~~~~~------------~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 218 (337)
..+..++..++-.++.++...... . +.+.+.+.+.......+...+..++++||.+..
T Consensus 443 ~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--- 519 (618)
T PF01347_consen 443 PKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--- 519 (618)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----
T ss_pred ccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---
Confidence 345678888888888887665322 1 223344444444445666888888999987642
Q ss_pred hHHHHhhHHHHHHHhhcCc---chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh
Q 019679 219 PDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 295 (337)
Q Consensus 219 ~~~~~~~l~~~l~~~~~~~---~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 295 (337)
...++.+...+.+. +..+|.+|+.++..++... ++...+.++|++.+ .....+||.+|...|-.--
T Consensus 520 -----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~--- 588 (618)
T PF01347_consen 520 -----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMN--TTEDPEVRIAAYLILMRCN--- 588 (618)
T ss_dssp -----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT----
T ss_pred -----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcC---
Confidence 23666666666665 6889999999999876544 33355566666666 4555789999875554321
Q ss_pred cHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679 296 DQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327 (337)
Q Consensus 296 ~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 327 (337)
++. ..+......+-.|++..|+..+...|
T Consensus 589 P~~---~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 589 PSP---SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp --H---HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 222 22333334456788999988776655
No 119
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0011 Score=59.65 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=109.3
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH-------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh-
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF- 217 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~- 217 (337)
...-|.+...++-++..||..++..+-.+-...|++.. .++-...+..+|+|+-+.||..|...+.++...|
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 34556777788899999999999998887776665442 2334456678899999999999988877665443
Q ss_pred ---ChHHHHhhHHHHH-HHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 218 ---GPDWAMQHIVPQV-LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 218 ---~~~~~~~~l~~~l-~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
.+. +...++..+ -++..|....||.+....+..+...-..-....+++|.+-..+.|.+..||.++...|..+-
T Consensus 253 e~iP~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 222 223344443 34445666899999999998887665555667899999999999999999999999888774
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=98.25 E-value=0.00026 Score=59.55 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=107.4
Q ss_pred chHH-HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh----
Q 019679 30 DVVP-AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---- 104 (337)
Q Consensus 30 ~l~~-~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---- 104 (337)
.++. .+...+.++++.+|+.|+.++|-++-. +++.- ...++.+.+.++..+..||..+++++..+....|.+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 4443 333677889999999999999977654 33332 3345555555566689999999999999887776432
Q ss_pred -------HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh--hch-hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679 105 -------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 174 (337)
Q Consensus 105 -------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 174 (337)
....+...+.+.+.+.++++|..+++++..+.-. +.. ..+...++-....-...++.+.|+...-.+..+
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 1246888999999999999999999999987543 223 222233333333333445567887777777766
Q ss_pred HhhhC--hhhHHHHHHHHHHHHcc
Q 019679 175 ASQLG--VGFFDDKLGALCMQWLK 196 (337)
Q Consensus 175 ~~~~~--~~~~~~~l~~~l~~~l~ 196 (337)
+..-. ...+.+-++|.+..+.+
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHh
Confidence 65432 22334445555554443
No 121
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.23 E-value=9.9e-05 Score=67.98 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=120.6
Q ss_pred HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH---HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--
Q 019679 145 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-- 219 (337)
Q Consensus 145 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-- 219 (337)
...+.|.+.+.+.......|...+..++.+....+.... .+.++|.+++.|.=++..||-.+.+++..+....+.
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 356888888888866667899999999998888766543 467999999999999999999999999988776543
Q ss_pred HHHHhhHHHHHHHhhcCcc---hHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 220 DWAMQHIVPQVLEMINNPH---YLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 220 ~~~~~~l~~~l~~~~~~~~---~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
..+...++|.++.+-.|.+ ..||..|+++++.+.+.... -.|.+.++..+.+.|.|+-.-||..|+++=+.+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 3346789999999888766 67999999999999885543 346788999999999999999999999875554
No 122
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=98.22 E-value=0.00051 Score=57.77 Aligned_cols=228 Identities=16% Similarity=0.160 Sum_probs=126.3
Q ss_pred hhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHH
Q 019679 73 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 152 (337)
Q Consensus 73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l 152 (337)
.+...++.+++.||..+++++|-.+-.-. + .....++.+...++..++.||..|++++-.+....|.+.+...-
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~---- 104 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDK-E-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES---- 104 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhCh-H-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh----
Confidence 33457788888999999999988775332 2 33455677777776668899999999998888877754331100
Q ss_pred HHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH
Q 019679 153 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 232 (337)
Q Consensus 153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~ 232 (337)
+.+ .......+..++.+.+.+.++++|..++..+.++.-.-... ..+.++..+.-
T Consensus 105 -----~~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~-~~~~vL~~Lll 159 (298)
T PF12719_consen 105 -----DND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS-DPPKVLSRLLL 159 (298)
T ss_pred -----ccC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence 000 11223456667777777777777777777777765321000 00223333222
Q ss_pred hhc----CcchHHHHHHHHHHHHhccccC--hHHHHhhHHHHHHhhccCCCh----hHHHHHHHHHHHHhhhhcH-----
Q 019679 233 MIN----NPHYLYRMTILQAISLLAPVMG--SEITCSQLLPVVINASKDRVP----NIKFNVAKVLQSLIPIVDQ----- 297 (337)
Q Consensus 233 ~~~----~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~i~~~~~~----- 297 (337)
.+- ..+.+.|+..-.++...+..-. .+.+...++|.+..+...+.. .-.....+....+.....+
T Consensus 160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~ 239 (298)
T PF12719_consen 160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVK 239 (298)
T ss_pred HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccC
Confidence 222 2346777777777777665433 233444566666655533321 1111122222222222111
Q ss_pred ---------HHHHHhhhHHHHhhhCCCCcc--HHHHHHHHHHHHH
Q 019679 298 ---------SVVEKSIRPCLVELSEDPDVD--VRFFATQALQSKD 331 (337)
Q Consensus 298 ---------~~~~~~i~~~l~~l~~d~~~~--vr~~a~~al~~l~ 331 (337)
..........+..+..|+..+ .+..-+++|+.+.
T Consensus 240 ~~~~~~~~~~~h~~La~~il~~i~~~~~~~~~~~k~~~~~L~~L~ 284 (298)
T PF12719_consen 240 ESNQEIQNESVHVDLAIDILNEILSDPEKEKEERKALCKALSKLE 284 (298)
T ss_pred ccccccccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccc
Confidence 122234455555666665554 7777777777654
No 123
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00028 Score=60.64 Aligned_cols=290 Identities=11% Similarity=0.061 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHh-----hhHh---
Q 019679 7 VRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQH-----ILPC--- 73 (337)
Q Consensus 7 vR~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~-----ll~~--- 73 (337)
+|.++.+.+..++++++--. ..-++...+...+.+..+.+...+...+.+++.....+ ..... +...
T Consensus 271 ~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~ 350 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLN 350 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHcc
Confidence 89999999999999988633 34577888888889999999999999998887655422 11111 1100
Q ss_pred --hHHhcCC-CcHHHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchh---hH
Q 019679 74 --VKELSSD-SSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGID---LL 144 (337)
Q Consensus 74 --l~~l~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~ 144 (337)
.....-| ..+....+.|..+.++....- -....+...+.+..-+.|.. .-||.+|+..++.++-+-+-. .+
T Consensus 351 ~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~f 430 (728)
T KOG4535|consen 351 GPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIF 430 (728)
T ss_pred CCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHH
Confidence 0111122 334566778888888775221 11123467788888887654 457888888877665443322 12
Q ss_pred HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-----ChhhHHHHHHHHHH----HH---ccccchHHHHHHHHHHHH
Q 019679 145 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-----GVGFFDDKLGALCM----QW---LKDKVYSIRDAAANNVKR 212 (337)
Q Consensus 145 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~~~~~~~l~~~l~----~~---l~d~~~~vr~~a~~~l~~ 212 (337)
.......+...+.|+.-.+|.-++-.++.|...+ .+....+.+...++ .. ....+..||..++++|+.
T Consensus 431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgn 510 (728)
T KOG4535|consen 431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence 2344555566677888888888888888876654 11222233332222 11 123567899999999999
Q ss_pred HHHHhChH------HHHh-hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC----hHHHHhhHHHHHHhhccC-CChhH
Q 019679 213 LAEEFGPD------WAMQ-HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG----SEITCSQLLPVVINASKD-RVPNI 280 (337)
Q Consensus 213 ~~~~~~~~------~~~~-~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d-~~~~v 280 (337)
+.+.+.+- ...+ .....+....-..+..||=.++.+++.+...-. .......+++.+..++.| .+..|
T Consensus 511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 511 LLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 88876421 0111 111112222223457799999999999865432 233456788888888754 56799
Q ss_pred HHHHHHHHHHHhhhhc
Q 019679 281 KFNVAKVLQSLIPIVD 296 (337)
Q Consensus 281 r~~a~~~l~~i~~~~~ 296 (337)
|.+|+.+|..-++-.+
T Consensus 591 Ri~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 591 RIRAAAALSVPGKREQ 606 (728)
T ss_pred eehhhhhhcCCCCccc
Confidence 9999999888775443
No 124
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.22 E-value=0.00076 Score=58.08 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc------CcchHHHHHHHHHHHHhccccC---------------
Q 019679 199 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMG--------------- 257 (337)
Q Consensus 199 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~vR~~~~~~l~~l~~~~~--------------- 257 (337)
....|.+|...+..+++.++.. ..+.+...+..+++ ..+|+.+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 4567889999999998887543 33334444444444 3569999999999999964431
Q ss_pred hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679 258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327 (337)
Q Consensus 258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 327 (337)
.+++..+++|-+. .-.+..+-+|..|++.+..+...++.+. ...++|.+..++.+++.-|+..|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2355677888777 3345668899999999999999988764 467999999999999999999998875
No 125
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.21 E-value=0.0049 Score=60.31 Aligned_cols=143 Identities=16% Similarity=0.102 Sum_probs=106.5
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 109 (337)
..+..+...+..+...+|..|+.++..+.+.-+.-.....+...+..-+.|++..||.+|++.+|.+.-..+ ....+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHHHH
Confidence 467777788888899999999999999988643322333455566677899999999999999999876443 234566
Q ss_pred HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 174 (337)
Q Consensus 110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 174 (337)
...+.+-+.|..-.||+-+++-+..++...+.-.....+...+...++|+...++..+.+.+..+
T Consensus 894 Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 77788888999999999999999999877543223345555566666777777777776665443
No 126
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.20 E-value=0.0015 Score=59.07 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=107.4
Q ss_pred chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcccc--chHHHHHHHHHH---HHHHHHhChHHH---HhhHHHHHH
Q 019679 160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK--VYSIRDAAANNV---KRLAEEFGPDWA---MQHIVPQVL 231 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~---~~~l~~~l~ 231 (337)
++.+|.-.+..+.. ........+..+.++...+..+ +..+|..++..+ ......++...+ .+.+....+
T Consensus 296 ~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 296 SPRLQEKILSLLSK---SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CHHHHHHHHHHHHH---hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 34455554444333 3222223356777777777777 778888998888 777776655422 233333344
Q ss_pred Hhhc--------CcchHHHHHHHHHHHHhccccChHHH-HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH--
Q 019679 232 EMIN--------NPHYLYRMTILQAISLLAPVMGSEIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV-- 300 (337)
Q Consensus 232 ~~~~--------~~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~-- 300 (337)
..+. ..+...|..+.+++|.++.....-+. .-.++..++..+.++.+++|.+.-.+|+.+..++....-
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~ 452 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDE 452 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccch
Confidence 4442 23477999999999999877654321 235777788888999999999999999999988764211
Q ss_pred ----HHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 301 ----EKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 301 ----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
.....-.+.....+....+|+.|++..+.+
T Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 453 DEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 111222222334455677899998877654
No 127
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.20 E-value=0.0016 Score=53.28 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=137.1
Q ss_pred hHHhcCCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh--chhhHHhh
Q 019679 74 VKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQS 147 (337)
Q Consensus 74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~ 147 (337)
+...++++++.+|..++..|..+...++++.. ...++..+.+.+.| ...-..++.++..+.+.- +.+. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh-HHH
Confidence 34456677777777777777777666654322 23455556666633 333444477777776432 1222 233
Q ss_pred HHHHHHHHh--cCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHH
Q 019679 148 LLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA 222 (337)
Q Consensus 148 llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~ 222 (337)
++..+.+-. +.-....|..+.+.+..+........ ..+.++..+.+.+.. .+|.---.+.+.+..+...+.....
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 444333322 22334688888888888877653322 233455666665543 4566556667777777777765444
Q ss_pred HhhHHHHHHHhhc--------CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 223 MQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 223 ~~~l~~~l~~~~~--------~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
.+.++..+.-.+- |+....|......+.... .....|.+..+|.++.-|....+.++.-+.++|......
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl--~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCL--SSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh--cCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 5555555444331 222222222222222211 123457789999999999999999999999999999999
Q ss_pred hcHHHHHHhhhHHHHh
Q 019679 295 VDQSVVEKSIRPCLVE 310 (337)
Q Consensus 295 ~~~~~~~~~i~~~l~~ 310 (337)
+|...+..+..+....
T Consensus 239 y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNA 254 (262)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9987665555544433
No 128
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.19 E-value=2.9e-06 Score=44.36 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=16.8
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
++|.++++++|++++||.+|+.+|+.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666554
No 129
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=98.16 E-value=0.00066 Score=62.85 Aligned_cols=218 Identities=16% Similarity=0.176 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC--
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-- 158 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d-- 158 (337)
+..|.....++...+. ..-+..+.+.+.... +.....++..+...+.... +.++..+.+++++
T Consensus 340 ~~~r~~~~Dal~~~GT--------~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~ 406 (574)
T smart00638 340 KKARRIFLDAVAQAGT--------PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPE 406 (574)
T ss_pred HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCcc
Confidence 6778888888777775 222344444444332 2233334444444433322 2344444455443
Q ss_pred --CchHHHHHHHHHhhHhHhhhChh------hHHHHHHHHHHHHc----cccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 159 --RHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWL----KDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 159 --~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
++..+|..+.-.++.++...+.. ...+.+++.+...+ ++.+...+...+++||.++ .......+
T Consensus 407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----~~~~i~~l 482 (574)
T smart00638 407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG----HPSSIKVL 482 (574)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC----ChhHHHHH
Confidence 45679999999998888754321 12244555555444 4455666778888888654 33223334
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhH
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP 306 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~ 306 (337)
.|.+. --.+.+..+|.+|+.++..++..... ...+.+++++.+ .+..++||.+|...|-.-- ++......+.
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~---P~~~~l~~ia- 554 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLMETK---PSVALLQRIA- 554 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHHhcC---CCHHHHHHHH-
Confidence 44433 11233578999999999988764433 355667777755 5566899998886655442 2212223333
Q ss_pred HHHhhhCCCCccHHHHHHHHH
Q 019679 307 CLVELSEDPDVDVRFFATQAL 327 (337)
Q Consensus 307 ~l~~l~~d~~~~vr~~a~~al 327 (337)
..+..|++..|+..+...|
T Consensus 555 --~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 555 --ELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred --HHHhhcCcHHHHHHhHHhh
Confidence 3355688888887765543
No 130
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00055 Score=61.54 Aligned_cols=143 Identities=21% Similarity=0.196 Sum_probs=74.5
Q ss_pred hHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH---hhh----HHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---
Q 019679 71 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQL----LPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--- 140 (337)
Q Consensus 71 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--- 140 (337)
-|++...++-+|..||..|+..+-++-...+++... +.+ ...+..+++|+.|.||..|+..+..+...+=
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 344445555666666666666666665555543321 112 2345555666666666666666555544421
Q ss_pred hhhHHhhHHH-HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679 141 IDLLSQSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 213 (337)
Q Consensus 141 ~~~~~~~llp-~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 213 (337)
+..+...++. .+-++..|....||.++++.+..+....-.....++++|.+-..+.|.+..||-+++..+..+
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 1111112222 222334455556666666666666555444445556666665666666666666666555554
No 131
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.12 E-value=4.9e-06 Score=43.47 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=19.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~ 60 (337)
++|.+.++++|++++||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456666666677777777777766666654
No 132
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.12 E-value=0.0024 Score=52.22 Aligned_cols=226 Identities=12% Similarity=0.182 Sum_probs=143.5
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCHHH----HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCc--ccChhhHHhh
Q 019679 35 YVRLLRDNEAEVRIAAAGKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMAP--ILGKDATIEQ 108 (337)
Q Consensus 35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~ 108 (337)
+-..+.++++.+|..|+..|+.+.+.++++. -.+.+..++..-+.|.. .+..+ +.++..+.. .++.+. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhCcCCChhh-HHH
Confidence 4467789999999999999999999988762 23446666665564432 33333 666666553 233222 233
Q ss_pred hHHHHHHhhc--CCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhChhhH
Q 019679 109 LLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFF 183 (337)
Q Consensus 109 l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~ 183 (337)
++..+.+-.. .-....|..+.+-+..+.+..... .+-+.++..+.+.+ ++++++.-..+.+.+..+...+....+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 3333333222 223578999999888887764321 12234445555444 678888888888999988888876666
Q ss_pred HHHHHHHHHHHc--------cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679 184 DDKLGALCMQWL--------KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 255 (337)
Q Consensus 184 ~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 255 (337)
.+.+.+.+.... +|+..--|+....+|..-.. ....+.+..+|.+.+.+.+....++.-++.++......
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 667777665543 23322223333333333221 22334567899999999999988999999999998888
Q ss_pred cChHHHHhhH
Q 019679 256 MGSEITCSQL 265 (337)
Q Consensus 256 ~~~~~~~~~l 265 (337)
+|.+...+++
T Consensus 239 y~~~~~~~~~ 248 (262)
T PF14500_consen 239 YGADSLSPHW 248 (262)
T ss_pred CCHHHHHHHH
Confidence 8876554443
No 133
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=0.0026 Score=62.48 Aligned_cols=324 Identities=14% Similarity=0.070 Sum_probs=168.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCccc-----chHHHHHHhc---CCC-hHHH--HHHHHHhHHHHHH-----hhCHHH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRS-----DVVPAYVRLL---RDN-EAEV--RIAAAGKVTKICR-----ILNPEL 65 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~-----~l~~~l~~~~---~d~-~~~v--R~~a~~~l~~~~~-----~~~~~~ 65 (337)
+++-.||..++-++.++.+...|+.-.. +++.++...+ .|. +|.. +-.-++.+..+.- .-..++
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE 140 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence 4677899999999999999988865322 2333333222 332 3322 2222334433321 112233
Q ss_pred HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH
Q 019679 66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 145 (337)
Q Consensus 66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 145 (337)
....+...+..++.+..+.--......+..+.... +....+++.+++.-+-.+.++....|...-..++..++.. +.
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~-~~ 217 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN-LE 217 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh-hc
Confidence 44455555555665544422222222222222211 1123455555555444444555555554444444443321 11
Q ss_pred hhHHHHHHHHh-cC--CchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH
Q 019679 146 QSLLPAIVELA-ED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 222 (337)
Q Consensus 146 ~~llp~l~~~~-~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 222 (337)
..+-..+.... .+ ....++.-..+.+-.+...... ..-.++|.+..-|..++..+|..|...+|.+....+....
T Consensus 218 ~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~ 295 (1266)
T KOG1525|consen 218 DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS 295 (1266)
T ss_pred hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc
Confidence 11222222211 11 1222333334444433332211 2345888888888899999999999999999765543322
Q ss_pred --HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh-hhcHHH
Q 019679 223 --MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVDQSV 299 (337)
Q Consensus 223 --~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~-~~~~~~ 299 (337)
.+.++..++.-+.|.+..||..+++.....-.......-...+.-.+.. .|.++.+|.+....+..... .+.-..
T Consensus 296 ~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~--~~~D~~~rir~~v~i~~~~v~~~~l~~ 373 (1266)
T KOG1525|consen 296 ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRE--RDLDEDVRVRTQVVIVACDVMKFKLVY 373 (1266)
T ss_pred ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHh--hcCChhhhheeeEEEEEeehhHhhhhh
Confidence 3457777888888999999999998888764332221112223333333 34444555443322222210 111112
Q ss_pred HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 300 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 300 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
... ++..+.+-+.|+.++||..|+..|..+-..
T Consensus 374 ~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 374 IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222 555666678899999999999999887663
No 134
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.00042 Score=64.93 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHhcC
Q 019679 85 VRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED 158 (337)
Q Consensus 85 vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~~d 158 (337)
-|.=|+..|+.+...-+ .-...-.|.|+++++++.+-.+.|-..+--...+...-. .+-+.+.....+.+.+.+
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 34445556665544221 111123566777777777766766655544444433211 111111000111111111
Q ss_pred ---CchHHHHHHHHHhhHhHhhh--Ch-hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChH-H--HHhhHHH
Q 019679 159 ---RHWRVRLAIIEYIPLLASQL--GV-GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD-W--AMQHIVP 228 (337)
Q Consensus 159 ---~~~~vr~~~~~~l~~l~~~~--~~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~-~--~~~~l~~ 228 (337)
-+.+-|..++..|..++..+ |. ......++.++++.++|+ .+-.|+=++-+||.+-+.+... + .......
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 12356777777777777765 32 335567888888888885 6888888888898888776432 1 1334455
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHhcccc----ChH--------------HHHhhHHH----HHHhhccCCChhHHHHHHH
Q 019679 229 QVLEMINNPHYLYRMTILQAISLLAPVM----GSE--------------ITCSQLLP----VVINASKDRVPNIKFNVAK 286 (337)
Q Consensus 229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~----~~~--------------~~~~~l~~----~l~~~l~d~~~~vr~~a~~ 286 (337)
.+...+.|+...||.+++-+++.+.... ... ...+.+.+ .++..++|.++-||.+.+-
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 6666778888889999988888886542 211 00122333 6777889999999999999
Q ss_pred HHHHHhhh
Q 019679 287 VLQSLIPI 294 (337)
Q Consensus 287 ~l~~i~~~ 294 (337)
+|..++-.
T Consensus 726 ~ls~~~~g 733 (1387)
T KOG1517|consen 726 ALSHFVVG 733 (1387)
T ss_pred HHHHHHHh
Confidence 98888643
No 135
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.09 E-value=0.0042 Score=57.75 Aligned_cols=294 Identities=15% Similarity=0.099 Sum_probs=172.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--hhHHh
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIE 107 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~ 107 (337)
...+..++...+.-+| .++..|..+++....+ .....+++.+.++++..+..+...+...|.+++-.... .....
T Consensus 252 ~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 252 LKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4455556655455555 6667788888875544 34566888898999999999999999999888753322 22346
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC-hh-hH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG-FF 183 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~-~~ 183 (337)
.+++.+.+++..++..++..++..|..++-.-. .......++|.+..++++++ .|..++..+..++..-. +. ..
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 799999999999999999999999988875433 23344568899999998765 45556666666654321 11 12
Q ss_pred HHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh-HHH-HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--h
Q 019679 184 DDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-DWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--S 258 (337)
Q Consensus 184 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~-~~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~ 258 (337)
....+|.++..+.. ++..+...++..+..++..-.. +.+ ...-++.+.+........ ..+..+..++..-| .
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLK 485 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHH
Confidence 23467777765443 4555554443333333321110 111 112344444433222222 23445566655443 2
Q ss_pred HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh-hhcHHHH--HHhhhHHHHhhhCCC--CccHHHHHHHHHHHHH
Q 019679 259 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVDQSVV--EKSIRPCLVELSEDP--DVDVRFFATQALQSKD 331 (337)
Q Consensus 259 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~-~~~~~~~--~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~ 331 (337)
..|.+.+.|++...-..++++....++.+|+++.- .++-..+ ...++|.+.+.+... ..++...++..++.++
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 23444444444333344455665555555555531 1121222 246889998877654 3467777777777665
No 136
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.08 E-value=0.0028 Score=56.67 Aligned_cols=290 Identities=15% Similarity=0.090 Sum_probs=171.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCC----------CCcccchHH--HHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-------
Q 019679 4 SWRVRYMVANQLYELCEAVGP----------EPTRSDVVP--AYVRLLRDNEAEVRIAAAGKVTKICRILNPE------- 64 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~----------~~~~~~l~~--~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~------- 64 (337)
+..+|.++...+......+-. ....+.+.+ .+.++..|++..-|-.++.++..+...--.+
T Consensus 194 s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~ 273 (678)
T KOG1293|consen 194 SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWF 273 (678)
T ss_pred hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccce
Confidence 456777777777732222211 011223455 6678888999999988888888776643111
Q ss_pred ---HH-HHhhh-HhhHHhcCCCcHHHHHHHHHHHHhcC---cccChhhHHhhhHHHHHHhh------cCCChhHHHHHHH
Q 019679 65 ---LA-IQHIL-PCVKELSSDSSQHVRSALATVIMGMA---PILGKDATIEQLLPIFLSLL------KDEFPDVRLNIIS 130 (337)
Q Consensus 65 ---~~-~~~ll-~~l~~l~~d~~~~vr~~a~~~l~~l~---~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~ 130 (337)
.. .+++. .....+..|+-+..-..++...+..+ +............+...+++ ....+..|.-++.
T Consensus 274 ~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~ 353 (678)
T KOG1293|consen 274 IFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLN 353 (678)
T ss_pred eeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhh
Confidence 00 01111 11223455665533333333333333 22222222222333333322 3345666655554
Q ss_pred hHHHhHhh---hch----hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh---ChhhHHHHHHHHHHHHccccch
Q 019679 131 KLDQVNQV---IGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVY 200 (337)
Q Consensus 131 ~l~~l~~~---~~~----~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~ 200 (337)
..-...+. .+. +.........+......++...+.+++.++..++... ....-..++...+++++.|++.
T Consensus 354 e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~ 433 (678)
T KOG1293|consen 354 ETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI 433 (678)
T ss_pred hhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch
Confidence 43222211 111 1111122222333334456667888877777665543 2223334577777888899999
Q ss_pred HHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhc
Q 019679 201 SIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINAS 273 (337)
Q Consensus 201 ~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l 273 (337)
.|...+..++..+.-.|++ ..+....+..+.++..++...+|..+.+.+..+.-....+. ....-...+..+.
T Consensus 434 ~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~ 513 (678)
T KOG1293|consen 434 MIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI 513 (678)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999877764 34566788899999999999999999999999886655332 2233455677888
Q ss_pred cCCChhHHHHHHHHHHHHhh
Q 019679 274 KDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 274 ~d~~~~vr~~a~~~l~~i~~ 293 (337)
+|+.+.|+..+.+.|..+.-
T Consensus 514 nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 514 NDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred hCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999998853
No 137
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.06 E-value=0.0068 Score=53.80 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=123.0
Q ss_pred HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
..+..+..+++....++..||..+++-+..+...+++ +.+.+.++..+.+.+-|..+.||..++.++..+-+.-+.+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3455566666777788899999999999999999987 67778888888888899999999999999988876555443
Q ss_pred HHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHH-HHHHHHHHHHhccccChHH
Q 019679 183 FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLAPVMGSEI 260 (337)
Q Consensus 183 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v-R~~~~~~l~~l~~~~~~~~ 260 (337)
..+...+...+ .|++.+||..|+..+.. + ..-.|.+++-..|-+... |....+++..++......
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls- 234 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS- 234 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-
Confidence 12233333333 68999999998776641 1 235678888888877544 455677888776433221
Q ss_pred HHhhHHHHHHhhccCCChhHHHHHHHHHHH
Q 019679 261 TCSQLLPVVINASKDRVPNIKFNVAKVLQS 290 (337)
Q Consensus 261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 290 (337)
...+++ .+--.+.|....||.++..++..
T Consensus 235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 235 IDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 122343 56667889999999988877643
No 138
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0093 Score=54.05 Aligned_cols=322 Identities=15% Similarity=0.164 Sum_probs=178.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH---------------
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--------------- 66 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--------------- 66 (337)
+...-||+.++-++-.+-+..+.-....+-...+..++.|.+..|-.++...+..+++..+++--
T Consensus 159 ~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~ 238 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVV 238 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHh
Confidence 45667999999999988887655443335566777888888877777777777777776554310
Q ss_pred -------------------HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---hh---------------------
Q 019679 67 -------------------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KD--------------------- 103 (337)
Q Consensus 67 -------------------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~--------------------- 103 (337)
.-.++..+..+-.-+++.+|....+++..+..... +.
T Consensus 239 ~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~ 318 (938)
T KOG1077|consen 239 VVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAI 318 (938)
T ss_pred hcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHH
Confidence 01112222223334556677777777766654322 00
Q ss_pred ------hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc-hhhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhH
Q 019679 104 ------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA 175 (337)
Q Consensus 104 ------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~ 175 (337)
.....-+..+.+++.+.+.++|.-++.++..++..-. .+.+..+ ...+...++ +++..+|..++..+-.++
T Consensus 319 h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 319 HLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred HcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 0011223344455556666666666666666554421 2233222 444444444 888899999998888777
Q ss_pred hhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHh---hcCcch-----------
Q 019679 176 SQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEM---INNPHY----------- 239 (337)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~---~~~~~~----------- 239 (337)
..-.. ..++.-+++.|...++.+|+.-+.-.+-+++.+..+ |+.+.++..+.-. ..|.-|
T Consensus 398 D~~Na----k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNne 473 (938)
T KOG1077|consen 398 DVSNA----KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNE 473 (938)
T ss_pred chhhH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecch
Confidence 65433 346667777788888999998888888888877543 4444433332211 111112
Q ss_pred -HHHHHHHHHHHHhc------------cccChH----------HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 240 -LYRMTILQAISLLA------------PVMGSE----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 240 -~vR~~~~~~l~~l~------------~~~~~~----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
-.+.++-..+..+. .++-++ ......+..+-+-+.--++..|.-...++-.+...++
T Consensus 474 dlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P 553 (938)
T KOG1077|consen 474 DLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP 553 (938)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh
Confidence 22333332222221 111000 0011223333333333444555555555555555443
Q ss_pred HHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 297 QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 297 ~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
.+...+...+....+-.|.++++.|++=|.-.
T Consensus 554 --Ei~~~v~~vFq~~~n~~D~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 554 --EIKSNVQKVFQLYSNLIDVELQQRAVEYLQLS 585 (938)
T ss_pred --hhhHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 23345555555555557888888888776543
No 139
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.00031 Score=66.55 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=113.5
Q ss_pred ChhhHHHHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhc
Q 019679 179 GVGFFDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLA 253 (337)
Q Consensus 179 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~ 253 (337)
|+......+.|++.+.++. .+++++.+|.-+++++... +.+ +.+.-+|.+...+. .+++.+|..++.+++.++
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 6566677899999998853 5689999999999999864 344 34556777777776 788999999999999988
Q ss_pred cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 254 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
-.+.. +.+..-+.+...+.|+++.||..|+..|..+.-. ...-..-.++-+..++.|++.+||..|...+..+...
T Consensus 990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 65543 3456678899999999999999999998887531 1111123445556688999999999999777776654
No 140
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0063 Score=60.91 Aligned_cols=285 Identities=13% Similarity=0.166 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC----ChHHHHHHHHH--hHHHHHHh---------hCHHHHHHhhhHh
Q 019679 9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD----NEAEVRIAAAG--KVTKICRI---------LNPELAIQHILPC 73 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d----~~~~vR~~a~~--~l~~~~~~---------~~~~~~~~~ll~~ 73 (337)
-++...++.+...+++.+. -.++..+.+.+.. ....|+..+.. ++....++ ++++.+......+
T Consensus 802 dta~~lfg~vfp~v~~k~~-~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l 880 (2067)
T KOG1822|consen 802 DTAVSLFGSVFPHVNNKIR-LSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTL 880 (2067)
T ss_pred HHHHHHHHHhccCccHHHH-HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence 3455666666666665542 3344444444432 24455555554 44433332 3455666666677
Q ss_pred hHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhc---hhhHHhhHH
Q 019679 74 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG---IDLLSQSLL 149 (337)
Q Consensus 74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll 149 (337)
+...+..+++..|-.+.++++.++...+...+...+...+..-+.+. ++..|..-.-+++-+-+..| .......-+
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v 960 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSV 960 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHH
Confidence 77788889999999999999999998887776666777777666665 45666666777777777665 333334444
Q ss_pred HHHHHHhcCCch-HHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc-cc--cchHHHHHHHHHHH------HHHHHh
Q 019679 150 PAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KD--KVYSIRDAAANNVK------RLAEEF 217 (337)
Q Consensus 150 p~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d--~~~~vr~~a~~~l~------~~~~~~ 217 (337)
..+..+.+|+.. .|+..++..+..+...-++-. +.+..+..+..++ .+ ...+|++.--+++. .+...+
T Consensus 961 ~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittl 1040 (2067)
T KOG1822|consen 961 SILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTL 1040 (2067)
T ss_pred HHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhc
Confidence 566677777665 899999999998888776643 2233444444444 33 33466666555555 666666
Q ss_pred ChHH-----------HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHH
Q 019679 218 GPDW-----------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 286 (337)
Q Consensus 218 ~~~~-----------~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 286 (337)
|++. +....+-...-.+.+++.-+..+++.++.++.-.-....-.+.+++.+...+....--.|.+.+.
T Consensus 1041 gpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~ 1120 (2067)
T KOG1822|consen 1041 GPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFS 1120 (2067)
T ss_pred ccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHh
Confidence 5531 11222223333334456778888888888875444343345578888888888888888888898
Q ss_pred HHHHHhhh
Q 019679 287 VLQSLIPI 294 (337)
Q Consensus 287 ~l~~i~~~ 294 (337)
++.+++..
T Consensus 1121 clrql~~R 1128 (2067)
T KOG1822|consen 1121 CLRQLVQR 1128 (2067)
T ss_pred hhhHHhHH
Confidence 88888754
No 141
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00071 Score=54.97 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=125.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH-
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI- 106 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~- 106 (337)
..+......+.+.+|+....++..+..+..+.+.. ...+.++..+.+-+++....|-++|+.+++.+.+.++.....
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778899999999999999888876643 233445555666777888899999999999998877654322
Q ss_pred -hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---
Q 019679 107 -EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--- 182 (337)
Q Consensus 107 -~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--- 182 (337)
+.++-.+..--.+.+..||..|-++|..++....+ ..+++.+.....+.++++|..+..++......+|...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 23333333333455678999999999999998876 4566777777888899999999999888887776332
Q ss_pred -HHHHHHHHHHHHccccchHHHHHHHHH
Q 019679 183 -FDDKLGALCMQWLKDKVYSIRDAAANN 209 (337)
Q Consensus 183 -~~~~l~~~l~~~l~d~~~~vr~~a~~~ 209 (337)
+...+.+.+-+-+.|.-+.+|++|=..
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHH
Confidence 222344555555667766666655333
No 142
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.00059 Score=64.78 Aligned_cols=177 Identities=20% Similarity=0.229 Sum_probs=127.9
Q ss_pred HHHHHHHHH---HhCCCCcccchHHHHHHhcCC----ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcH
Q 019679 12 ANQLYELCE---AVGPEPTRSDVVPAYVRLLRD----NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQ 83 (337)
Q Consensus 12 ~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~d----~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~ 83 (337)
++.+.-++. -.|++.....+.|++.+.+.. .+|+++.+|.-+|+++.-. ...+-..-+|.+...++ .++|
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i--Sa~fces~l~llftimeksp~p 975 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI--SAEFCESHLPLLFTIMEKSPSP 975 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCc
Confidence 344444443 235555667899999999943 5799999999999988542 22333455677776665 8999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH-HhhHHHHHHHHhcCCchH
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRHWR 162 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~llp~l~~~~~d~~~~ 162 (337)
.+|..+.-++|.++-.++. ..+..-+.+...+.|+++.||+.|+..+..+.-. +.+ .+..++.+...+.|++.+
T Consensus 976 ~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen 976 RIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred eeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccHHHHHHHhcCCcHH
Confidence 9999999999999876663 3456678899999999999999999999877543 111 245667777788999999
Q ss_pred HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcccc
Q 019679 163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK 198 (337)
Q Consensus 163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 198 (337)
+|..+=..+..++..-.. .+ .++|-++..|+|.
T Consensus 1051 IsdlAk~FF~Els~k~n~--iy-nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKGNT--IY-NLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHhhhcccc--hh-hhchHHHHhhccC
Confidence 999888777777765422 12 3666666666665
No 143
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.015 Score=58.36 Aligned_cols=284 Identities=17% Similarity=0.167 Sum_probs=170.6
Q ss_pred HHHHHHHHhHHHHHHhhCHHHH---HHhhhHhhHHhcCCCcHHHHHHHHH--HHH----hcC---c--ccChhhHHhhhH
Q 019679 45 EVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALAT--VIM----GMA---P--ILGKDATIEQLL 110 (337)
Q Consensus 45 ~vR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~l~~d~~~~vr~~a~~--~l~----~l~---~--~~~~~~~~~~l~ 110 (337)
.+-..+...++.+..+++.+.. .+.+...+.+...-....|+..+.. ++. .+. . ..|++.....-+
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 4566677777777777776632 2233333333333333445544433 222 222 1 556666666666
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhC---hhhHHHH
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG---VGFFDDK 186 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~ 186 (337)
..+...+...+|-.|-.+..++++++...+...+...+...+.+.+ +..++..|..-.-.++.+-+..| ...+...
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 7777778888999999999999999999987766555555554444 44566677776677777766654 4445555
Q ss_pred HHHHHHHHccccch-HHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhc-Cc--chHHHHHHHHHHH------Hhcc
Q 019679 187 LGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMIN-NP--HYLYRMTILQAIS------LLAP 254 (337)
Q Consensus 187 l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~-~~--~~~vR~~~~~~l~------~l~~ 254 (337)
-+.+++.+..|+.. .|+.-++.++..+....|+-. +....+..+..++- .+ ...++++.-+++. .+..
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alit 1038 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALIT 1038 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHH
Confidence 56678888888766 999999999999988776532 23333444444433 33 2445555554444 4444
Q ss_pred ccChH-----------HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHH
Q 019679 255 VMGSE-----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFA 323 (337)
Q Consensus 255 ~~~~~-----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a 323 (337)
..|++ .++...+-...-++..+++-+..+++.+|.++.-.-......+.+.+.+..++..+.--.|...
T Consensus 1039 tlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~ 1118 (2067)
T KOG1822|consen 1039 TLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRAS 1118 (2067)
T ss_pred hcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhH
Confidence 44332 1122233333344556678999999999999964433333345667777766554443344433
Q ss_pred HHHHH
Q 019679 324 TQALQ 328 (337)
Q Consensus 324 ~~al~ 328 (337)
...+.
T Consensus 1119 ~~clr 1123 (2067)
T KOG1822|consen 1119 FSCLR 1123 (2067)
T ss_pred Hhhhh
Confidence 33333
No 144
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.82 E-value=0.029 Score=52.45 Aligned_cols=138 Identities=18% Similarity=0.208 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh---hhH---hhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH---ILP---CVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~---ll~---~l~ 75 (337)
|++..+|.+++.++..++..--|+. |++++|.+..++.+.|..--..|.++|..+......++.... .++ .+.
T Consensus 101 ~sn~ki~~~vay~is~Ia~~D~Pd~-WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f 179 (1005)
T KOG2274|consen 101 DSNSKIRSAVAYAISSIAAVDYPDE-WPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF 179 (1005)
T ss_pred ccccccchHHHHHHHHHHhccCchh-hHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 6788899999999999999887777 699999999999998888889999999999887654432111 111 223
Q ss_pred HhcCCCcHHHHHHHH--HHHHhcC---cccChh------hHHhhhHHHHHHhhc------C-CChhHHHHHHHhHHHhHh
Q 019679 76 ELSSDSSQHVRSALA--TVIMGMA---PILGKD------ATIEQLLPIFLSLLK------D-EFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~--~~l~~l~---~~~~~~------~~~~~l~~~l~~~l~------d-~~~~vr~~a~~~l~~l~~ 137 (337)
.+....+...|..++ ..+.... ...++. .....+++.+..++. + .+...|...++++..+.+
T Consensus 180 ~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~ 259 (1005)
T KOG2274|consen 180 ALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVE 259 (1005)
T ss_pred hhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 344455555555444 2222222 222211 112334444444432 2 345788888999888887
Q ss_pred hhc
Q 019679 138 VIG 140 (337)
Q Consensus 138 ~~~ 140 (337)
.+.
T Consensus 260 nfp 262 (1005)
T KOG2274|consen 260 NFP 262 (1005)
T ss_pred hhH
Confidence 764
No 145
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.81 E-value=0.00026 Score=65.34 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh-
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS- 258 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~- 258 (337)
+...+.|.+....+.....+|..-..+|..+......+.+ .+.++|.+.+.+.=++..+|..+..++.-+....+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 3456888888888866678888889999998887755443 457899999999988888998888888876433321
Q ss_pred -HHHHhhHHHHHHhhccCCC---hhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 259 -EITCSQLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 259 -~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
......++|.++.+-.|++ ..||..|+++|+.+.+..+.. .+...++.+|.+.+.|+..-||..|+.+=+...
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 2246789999999988777 579999999999999876654 456789999999999999999999987755443
No 146
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0033 Score=57.94 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=128.0
Q ss_pred HHHhcCCC-hHHHHHHHHHhHHHHHHhhCHHH----HHHhhhHhhHHhcCCC-cHHHHHHHHHHHHhcCcccChhhH---
Q 019679 35 YVRLLRDN-EAEVRIAAAGKVTKICRILNPEL----AIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDAT--- 105 (337)
Q Consensus 35 l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~--- 105 (337)
+++-++.+ ++.....++.-+.++......+. -.+.++|.+.++++++ +..+-..||.++..+++.++....
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence 33444333 66666666666666655444442 2467899999999875 679999999999999999886542
Q ss_pred HhhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679 106 IEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-- 182 (337)
Q Consensus 106 ~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 182 (337)
..+.+|++++-+ .=+.-+|-+.+++++..+.+.=+..-+...-+-....++.==+..++..++......++.+..+.
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~ 331 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH 331 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 356788887654 45678999999999999987644332222112222222211124467777777778888776554
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 218 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 218 (337)
+.-+.+|.+.++|...+..+-+.++.++.++++.+.
T Consensus 332 ~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 332 FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 445789999999999999999999999999998874
No 147
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0012 Score=58.02 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=103.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 228 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 228 (337)
..+.+++.|.++..|...+-.+..---.-|.. .++..+++ ..+|.+..||.+|+-+++-++.. + ...++
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D---~~~lv 588 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D---RDLLV 588 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEec---C---cchhh
Confidence 35567788888888888665554332222332 23444444 47999999999999999877632 1 23555
Q ss_pred HHHHhhcCc-chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhh
Q 019679 229 QVLEMINNP-HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIR 305 (337)
Q Consensus 229 ~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~ 305 (337)
..++.+.++ +++||....-+++..+..-|.. .-.+.+..+..|++.-||++|+-+++.|.....++. -..-|.
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~ 664 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRII 664 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHH
Confidence 566666654 6999999999999988777765 344667777899999999999999999876554431 123344
Q ss_pred HHHHhhhCCCC
Q 019679 306 PCLVELSEDPD 316 (337)
Q Consensus 306 ~~l~~l~~d~~ 316 (337)
..+.....|+.
T Consensus 665 k~f~~vI~~Kh 675 (926)
T COG5116 665 KKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHhhhh
Confidence 44445555543
No 148
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.78 E-value=0.0086 Score=53.16 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=100.1
Q ss_pred hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 143 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 143 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
.+.+.++-++......++..||..+++.+..++...++ +.....++.-+.+.+-|..+.||..|+.+|..+-+--+.+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 44566777777888889999999999999999998877 5566677888888889999999999999999886544433
Q ss_pred HHHhhHHHHHHHhh-cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHH-HHHHHHHhh
Q 019679 221 WAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV-AKVLQSLIP 293 (337)
Q Consensus 221 ~~~~~l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a-~~~l~~i~~ 293 (337)
. ..+...+...+ +||+..||..++.-+.. .+.-.|+++....|-+...|+.. .++|..++.
T Consensus 167 e--n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd 229 (885)
T COG5218 167 E--NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGD 229 (885)
T ss_pred H--HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcc
Confidence 2 11222333333 68899999988655532 34456777777777776666544 567777753
No 149
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.032 Score=51.62 Aligned_cols=325 Identities=15% Similarity=0.202 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----H-H--HHhhhH-----
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----L-A--IQHILP----- 72 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~-~--~~~ll~----- 72 (337)
..+....-+++..+++.--|+. |+.++|.+..-++..|-.+-.+...+-..+.+...++ . + .+.++.
T Consensus 102 ~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~P 180 (960)
T KOG1992|consen 102 FNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEP 180 (960)
T ss_pred HHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhH
Confidence 4566666777777776555555 6899999999998777666655555555555543322 1 1 111111
Q ss_pred ---hhH-------HhcCCCc----H-HHHHHHHHHHHhcCc-ccCh--hhHHhhhHHHHHHhhcCCC-------------
Q 019679 73 ---CVK-------ELSSDSS----Q-HVRSALATVIMGMAP-ILGK--DATIEQLLPIFLSLLKDEF------------- 121 (337)
Q Consensus 73 ---~l~-------~l~~d~~----~-~vr~~a~~~l~~l~~-~~~~--~~~~~~l~~~l~~~l~d~~------------- 121 (337)
.+. ...+|.. + .|-...++.+..+.- -+++ |+..+..++.+.+++.-.+
T Consensus 181 lt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l 260 (960)
T KOG1992|consen 181 LTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVL 260 (960)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHH
Confidence 111 1122332 0 223333444444332 2221 2334678888888886221
Q ss_pred hhHHHHHHHhHHHhHhhhchhh--HHhhHHHHHHHHh----cCCch-HHHHHHHHHhhHhHhhhC-------h-------
Q 019679 122 PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA----EDRHW-RVRLAIIEYIPLLASQLG-------V------- 180 (337)
Q Consensus 122 ~~vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~----~d~~~-~vr~~~~~~l~~l~~~~~-------~------- 180 (337)
..+|...|..+........++. +.+.++.....++ .|+.. .....+++.+..+++... .
T Consensus 261 ~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~ 340 (960)
T KOG1992|consen 261 DKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQIC 340 (960)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHH
Confidence 3567777777777766654321 1222222233333 33322 334444555555544321 1
Q ss_pred ---------------hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChHHHHhhHHHHH----HHhhcCc--c
Q 019679 181 ---------------GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV----LEMINNP--H 238 (337)
Q Consensus 181 ---------------~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~~--~ 238 (337)
+.+.+..+..+-+-++-. ...-|.+|+..+..+++.++.. ....+-..+ -++.++| +
T Consensus 341 e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~~nPS~n 419 (960)
T KOG1992|consen 341 EKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYSKNPSGN 419 (960)
T ss_pred HhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhccCCCcc
Confidence 111111222222222222 2234778888899999888543 222222222 2333344 6
Q ss_pred hHHHHHHHHHHHHhcccc-----C----------hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHh
Q 019679 239 YLYRMTILQAISLLAPVM-----G----------SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 303 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~-----~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 303 (337)
|..+..++..+.+++... | .++|.+.++|.+.+-=..+.+-+|..+++-+-.+...++++. ...
T Consensus 420 Wk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~-lm~ 498 (960)
T KOG1992|consen 420 WKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEH-LMA 498 (960)
T ss_pred ccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHH-HHH
Confidence 999999999988886331 1 246677788888775556778899999988888888888764 467
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
++|.+...+...+.-|-..|+.+++.+-.
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 88888888888888899999999987754
No 150
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.0038 Score=58.87 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=135.8
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---CHHHHHHhhhHhhHHhcCC---CcHHHHHHHHHHHHhcCcccC--
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQHILPCVKELSSD---SSQHVRSALATVIMGMAPILG-- 101 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~---~~~~~~~~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~-- 101 (337)
-++|.+.++++++-.+.|..-+-..+++...- ..+.+.+..-.++.+.+++ -+++-|..++..|..+...+.
T Consensus 512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lG 591 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLG 591 (1387)
T ss_pred chHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchh
Confidence 48999999999999999999888888887642 2223333222333333333 245888999999998887543
Q ss_pred h-hhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHh
Q 019679 102 K-DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 176 (337)
Q Consensus 102 ~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 176 (337)
+ ......++.++++.++|. .+-.|.=++-+|+.+-+.+..-.+ .......+...+.|+.++||.+++.+|+.+..
T Consensus 592 Q~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 592 QKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 2 334467889999999995 799999999999999887653221 23455666778899999999999999999887
Q ss_pred hh----Chh--------------hHHHHHHH----HHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679 177 QL----GVG--------------FFDDKLGA----LCMQWLKDKVYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 177 ~~----~~~--------------~~~~~l~~----~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 217 (337)
.. ... ...+.+++ .++..++|.++.||...+.++..+....
T Consensus 672 ~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 672 NGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 53 110 11233343 5667889999999999999999887543
No 151
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0012 Score=58.17 Aligned_cols=132 Identities=16% Similarity=0.034 Sum_probs=97.3
Q ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh-hcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679 188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSEITCSQLL 266 (337)
Q Consensus 188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 266 (337)
-..+.+++.|.++-.|...+-+++.-...-|+. .++..++.. .+|.+..||.+|+-+++.++- . ....+
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~----D~~~l 587 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--D----DRDLL 587 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEe--c----Ccchh
Confidence 346667889999999998877776544433443 344444444 678899999999999988762 1 23455
Q ss_pred HHHHhhccC-CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 267 PVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 267 ~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
+-..++|.+ .++.||.+.+-+|+..+..-|.+ .....|..+..|+..-||+.|+-|++.+...
T Consensus 588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 555566654 45899999999999998877753 4566777888999999999999999887654
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.72 E-value=0.0012 Score=63.14 Aligned_cols=216 Identities=18% Similarity=0.132 Sum_probs=136.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHH------------HhcCCC-hHHHHHHHHHhHHHHHHhhCHHHHH
Q 019679 1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV------------RLLRDN-EAEVRIAAAGKVTKICRILNPELAI 67 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~------------~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~ 67 (337)
++++|.+|+.++-++.++.+.-+.......+-..+. .+..|+ -..||++++.+|+.+.+++....+
T Consensus 87 ~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~- 165 (1549)
T KOG0392|consen 87 FEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLI- 165 (1549)
T ss_pred cCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhh-
Confidence 589999999999999999988877654322111111 111221 247999999999999998877654
Q ss_pred HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---h
Q 019679 68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D 142 (337)
Q Consensus 68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~ 142 (337)
...+.++.+++.-++|.+|...+..+........+. .....+++.+.+.+.|++.+||..|++.+..+....-. +
T Consensus 166 ~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~ 245 (1549)
T KOG0392|consen 166 KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQ 245 (1549)
T ss_pred HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHh
Confidence 455667777777779999998887776655432221 12356778888899999999999999998777665511 1
Q ss_pred ---hHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHh-HhhhChhhH-HHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 143 ---LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLL-ASQLGVGFF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 143 ---~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l-~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
.+...+...+.++.. ......|....+.+... ...+..... ...+.|-+..+++..-..+|.+++..+..+.+
T Consensus 246 ~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 246 KIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122223333333322 12223444444333332 111111111 12466667777788888899999999888876
Q ss_pred Hh
Q 019679 216 EF 217 (337)
Q Consensus 216 ~~ 217 (337)
.-
T Consensus 326 ~~ 327 (1549)
T KOG0392|consen 326 AD 327 (1549)
T ss_pred cC
Confidence 53
No 153
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.71 E-value=0.0049 Score=57.76 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=106.5
Q ss_pred hhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-ChhhHHH
Q 019679 108 QLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDD 185 (337)
Q Consensus 108 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~ 185 (337)
++..++.++... .....|..-..++...+.. .-+..+.+.+....-.... +...+..+.... .+ ..
T Consensus 363 ~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~--------~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P---t~ 430 (618)
T PF01347_consen 363 DLEELYKQLKSKSKKEQARKIFLDALPQAGTN--------PAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP---TE 430 (618)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHHHHH-SH--------HHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT--------H
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC---CH
Confidence 344444333322 2456666666666665543 1222333333332221111 234444444333 22 13
Q ss_pred HHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhChH------------HHHhhHHHHHHHhh----cCcchHHHHHH
Q 019679 186 KLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPD------------WAMQHIVPQVLEMI----NNPHYLYRMTI 245 (337)
Q Consensus 186 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~------------~~~~~l~~~l~~~~----~~~~~~vR~~~ 245 (337)
.++..+..+++. .++.++..|+-+++.+....-.. ...+.+++.+...+ ...+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 456666666654 45679999999999887654211 12334444444444 45567889999
Q ss_pred HHHHHHhccccChHHHHhhHHHHHHhhccCC---ChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHH
Q 019679 246 LQAISLLAPVMGSEITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFF 322 (337)
Q Consensus 246 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~ 322 (337)
+.+||.++. +..++.+..++.+. ...+|.+|+.+|..++.... +...+.++|.+.+- ..+.+||..
T Consensus 511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~--~e~~EvRia 579 (618)
T PF01347_consen 511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNT--TEDPEVRIA 579 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-T--TS-HHHHHH
T ss_pred HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCC--CCChhHHHH
Confidence 999999763 35677777777666 67999999999998866543 23334444444432 235779988
Q ss_pred HHHHHHH
Q 019679 323 ATQALQS 329 (337)
Q Consensus 323 a~~al~~ 329 (337)
|...|-.
T Consensus 580 A~~~lm~ 586 (618)
T PF01347_consen 580 AYLILMR 586 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8766643
No 154
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.66 E-value=0.0069 Score=56.75 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
++.||....-+++.++- ..+...+.++|.+.+-++ .....+|...+-+++.++..... ..+.-+|.+...+.|++
T Consensus 944 ~~~vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPS 1019 (1529)
T ss_pred chHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCch
Confidence 45677777777777763 334444668998888875 45688999999888888776433 23456799999999999
Q ss_pred HHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679 83 QHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 150 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp 150 (337)
+-||+.++..|.++.. .+. ....++-.+...+-|.++++|.-+=-.++.+.+.-.+..+...++.
T Consensus 1020 ~iVRrqt~ilL~rLLq---~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQ---FGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred HHHHHHHHHHHHHHHh---hhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 9999999999988764 111 1123433444445589999999888888877766444333333333
No 155
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0047 Score=50.38 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=64.6
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--HhhHHHHH
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQV 230 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l 230 (337)
.+.+.+|......+..+..++.+-... .....++..+.+-++.....|-.+|+.+++.+...++.... .+.++-.+
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555555555432211 11223444444555555566666666666666655533211 11112222
Q ss_pred HHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 231 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 231 ~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
..-..+.+--+|..+-.++..+.....+. .+++.+...+...++.+|..++.++......+|
T Consensus 176 l~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 176 LHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 22222334455666666666655544433 233333333444555666655555555544443
No 156
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.59 E-value=0.0016 Score=49.81 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCc---ccch------------HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhh
Q 019679 6 RVRYMVANQLYELCEAVGPEPT---RSDV------------VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 70 (337)
Q Consensus 6 ~vR~~~~~~l~~~~~~~~~~~~---~~~l------------~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l 70 (337)
+||..+..++..+++..++... |+.+ -+.+.-++.|+++.+|.+|+..+..+.+...+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~------ 74 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF------ 74 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH------
Confidence 5899999999999998554321 2223 334566778999999999999999998863221
Q ss_pred hHhhHHhcCCCcHH--HHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhc----hhh
Q 019679 71 LPCVKELSSDSSQH--VRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIG----IDL 143 (337)
Q Consensus 71 l~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~----~~~ 143 (337)
+. ..++.... --......++.+. .++-..+...+ .+.+..+-...++++..+++..+ +..
T Consensus 75 ---L~-~Ae~~~~~~~sFtslS~tLa~~i---------~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ 141 (182)
T PF13251_consen 75 ---LA-QAEESKGPSGSFTSLSSTLASMI---------MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPG 141 (182)
T ss_pred ---HH-HHHhcCCCCCCcccHHHHHHHHH---------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHh
Confidence 10 11111100 0001111222211 11112222222 23345555566666666655433 234
Q ss_pred HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679 144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
+...++..+...+.+.+..+|..++.+++.+...
T Consensus 142 ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 142 LLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4455566666666666666666666666655543
No 157
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.56 E-value=0.0025 Score=61.16 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=133.6
Q ss_pred hHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH---hhh---------HHHHHHhhcCC-ChhHHHHHHHhHHHhHh
Q 019679 71 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQL---------LPIFLSLLKDE-FPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 71 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l---------~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 137 (337)
+..+....-+++|.+|..+.-++..+.+..+..... +++ +..+-.++.|+ -..||.+++++++.+.+
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~ 158 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK 158 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence 333344444677777777777777766554433221 111 11222223332 24799999999999998
Q ss_pred hhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 138 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 138 ~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
...+..+ ...+..+.++...+.|++|++-+..+........ -......+++.+.+.+.|.+..||..|+..+..+..
T Consensus 159 ~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s 237 (1549)
T KOG0392|consen 159 HMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPS 237 (1549)
T ss_pred hhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhH
Confidence 8765544 6677888888888899999988777665544221 123455678888899999999999999999887776
Q ss_pred HhChHH---HHhhHHHHHHHhhcC---cc---hHHHHHHHHHHHHh-ccccChH-HHHhhHHHHHHhhccCCChhHHHHH
Q 019679 216 EFGPDW---AMQHIVPQVLEMINN---PH---YLYRMTILQAISLL-APVMGSE-ITCSQLLPVVINASKDRVPNIKFNV 284 (337)
Q Consensus 216 ~~~~~~---~~~~l~~~l~~~~~~---~~---~~vR~~~~~~l~~l-~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a 284 (337)
.+ ... -...++..++..+.+ -. ...|......+... ...+... .....+.|-++.++......+|.++
T Consensus 238 ~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~ 316 (1549)
T KOG0392|consen 238 IQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAA 316 (1549)
T ss_pred HH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 55 111 122233333333321 11 12222111111111 0001111 1123577888888888999999999
Q ss_pred HHHHHHHhhh
Q 019679 285 AKVLQSLIPI 294 (337)
Q Consensus 285 ~~~l~~i~~~ 294 (337)
+..+..+.+.
T Consensus 317 l~~l~~lle~ 326 (1549)
T KOG0392|consen 317 LETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHhc
Confidence 9999888654
No 158
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.079 Score=49.22 Aligned_cols=247 Identities=12% Similarity=0.104 Sum_probs=131.6
Q ss_pred hhHhhHHhcCCCcHHHHHHHHHHHHhcCccc--------ChhhHHhhhHHHHHHhhc-------CCChhHHHHHHHhHHH
Q 019679 70 ILPCVKELSSDSSQHVRSALATVIMGMAPIL--------GKDATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQ 134 (337)
Q Consensus 70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--------~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~ 134 (337)
++|.+...++.++..|...|+.++.++.... +.+.....+.+.+..++. .+++-+-++..+.+..
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 4566666777778888888888887775433 333333334444444441 1223333333333322
Q ss_pred hHhhhchhhHHhhHHHHHHHH----hcC-CchHHHHHHHHHhhHhHhhhChhh------HHHHHHHHHHHHccccchHHH
Q 019679 135 VNQVIGIDLLSQSLLPAIVEL----AED-RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIR 203 (337)
Q Consensus 135 l~~~~~~~~~~~~llp~l~~~----~~d-~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr 203 (337)
.-+.+- ...+.+++.+.++ .+. ++++--+...+.++.+....+... +.+.++|.+...+..+-.+.-
T Consensus 579 ~~~~i~--p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~Efi 656 (960)
T KOG1992|consen 579 LQSAII--PHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFI 656 (960)
T ss_pred CHHhhh--hhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211110 0113344444433 333 456777888888888877665433 677888988888887777777
Q ss_pred HHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHH---HHHHHHHHHhccccCh----HHHHhhHHHHHHhhccCC
Q 019679 204 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR---MTILQAISLLAPVMGS----EITCSQLLPVVINASKDR 276 (337)
Q Consensus 204 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR---~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~ 276 (337)
-.+...++.+.+..++ .+-+.+.|.+--+++..-|..+ -+.++.+..+.+.-.. ......++.++-++...+
T Consensus 657 PYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk 735 (960)
T KOG1992|consen 657 PYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK 735 (960)
T ss_pred HHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc
Confidence 7778888888776654 2223333333333333334433 2233333333322111 122456777777777655
Q ss_pred ChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHH
Q 019679 277 VPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRF 321 (337)
Q Consensus 277 ~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~ 321 (337)
.... .+...|..+...+... +......-.+..+.+.+.++...
T Consensus 736 a~Dh--~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k 782 (960)
T KOG1992|consen 736 ANDH--HGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVK 782 (960)
T ss_pred ccch--hHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHH
Confidence 4333 4666777777666654 22233444444566666665333
No 159
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.51 E-value=0.012 Score=54.51 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=83.9
Q ss_pred HHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhh----cCcchHHHHHHHHHHHH
Q 019679 186 KLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMI----NNPHYLYRMTILQAISL 251 (337)
Q Consensus 186 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~----~~~~~~vR~~~~~~l~~ 251 (337)
.++..++.++++ ..+.+|..|.-+++.+....-. ....+.+++.+.+.+ ++.+...+..++.+||.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 466667777765 3567999999999988864311 112244555555444 34556678889999988
Q ss_pred hccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679 252 LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329 (337)
Q Consensus 252 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 329 (337)
++.. .....+.|++. .-.+....+|.+|+.+|..++..... ...+.+++.+.+ .+.+++||..|.-.|-.
T Consensus 473 ~g~~----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 473 AGHP----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLME 542 (574)
T ss_pred cCCh----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence 6642 22334444443 22344568999999999988765442 223344444422 23467899888877644
No 160
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.45 E-value=0.083 Score=50.02 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=118.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhH---------------
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL--------------- 173 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~--------------- 173 (337)
+..++...+-|+.+.||..|+.++..+.+..+...- ..++..+..-..|+...++++.-..+..
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l 551 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL 551 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence 556677778899999999999999999887654321 2333333333344444444443322211
Q ss_pred -----hHhh-------hChhhHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679 174 -----LASQ-------LGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240 (337)
Q Consensus 174 -----l~~~-------~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 240 (337)
+..- -|...+...++.++...++ |+...||.++++.+..+....+.....+..+-.+.....|+-..
T Consensus 552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vs 631 (1529)
T KOG0413|consen 552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVS 631 (1529)
T ss_pred CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchH
Confidence 1111 1223345567777888887 88889999999999988887766655565677788888899999
Q ss_pred HHHHHHHHHHHhccccCh-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 241 YRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 241 vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
+|..++.+++.+.-.-.. -......+..+..++.|....|...|...+..+
T Consensus 632 vrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 632 VRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999887422111 122345566677777777777777776644433
No 161
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.38 E-value=0.18 Score=52.23 Aligned_cols=257 Identities=13% Similarity=0.139 Sum_probs=153.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC------cccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP------TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPEL--AIQHILP 72 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~------~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~ 72 (337)
+++..++..++..|.+++..+.+.. ..++++..+...+. ..+.+||...++++..+........ -.+.++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 3456788999999999998776432 12356666666554 4568999999999999887655431 1234555
Q ss_pred hhHHhcCCCcHHHHHHHHHHHHhcCcc-cC---h--hhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhc-----
Q 019679 73 CVKELSSDSSQHVRSALATVIMGMAPI-LG---K--DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG----- 140 (337)
Q Consensus 73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~----- 140 (337)
.+.....++++.+-..+.+.+..+... ++ . .....+++..+.++.+.. +.++-..|+..+..++..+-
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Confidence 555566777777777787777766432 21 1 123345666666666533 34555555555544322220
Q ss_pred ------------------------------hhhHHhhHHHHHH---HHhcCCchHHHHHHHHHhhHhHhhhChh----h-
Q 019679 141 ------------------------------IDLLSQSLLPAIV---ELAEDRHWRVRLAIIEYIPLLASQLGVG----F- 182 (337)
Q Consensus 141 ------------------------------~~~~~~~llp~l~---~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~- 182 (337)
.+......+|.+. .+..|....||..+++.|=.+....|.. .
T Consensus 1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076 1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 0111234555554 4467899999999998877666655542 2
Q ss_pred ---HHHHHHHHHHHHcc----------------------ccchHHHHHHHHHHHHHHHHhCh-----HHHHhhHHHHHHH
Q 019679 183 ---FDDKLGALCMQWLK----------------------DKVYSIRDAAANNVKRLAEEFGP-----DWAMQHIVPQVLE 232 (337)
Q Consensus 183 ---~~~~l~~~l~~~l~----------------------d~~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~ 232 (337)
+...+.|++-..=. +...++.+.+..++..++..+.. ....+.++..+..
T Consensus 1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345555433100 11224566666676666655532 1134556666677
Q ss_pred hhcCcchHHHHHHHHHHHHhccccCh
Q 019679 233 MINNPHYLYRMTILQAISLLAPVMGS 258 (337)
Q Consensus 233 ~~~~~~~~vR~~~~~~l~~l~~~~~~ 258 (337)
++..++...=..+..++..+....|.
T Consensus 1468 ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1468 FIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 77777777666777888887655553
No 162
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.093 Score=50.55 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCccc-----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH--HHhhhHhhHH-
Q 019679 6 RVRYMVANQLYELCEAVGP-EPTRS-----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKE- 76 (337)
Q Consensus 6 ~vR~~~~~~l~~~~~~~~~-~~~~~-----~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~- 76 (337)
.+|...+..++.+....+. ..... .++..+..+-..+--.+|..|.-+..++-..+-.... ..+.-..=++
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQl 249 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQL 249 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3677778888887777665 22222 2444444444445566788777666555433211100 0000000000
Q ss_pred -hcCCCcHHH--HHHHHHHHHhcCcccChhhHHhhhHHHHHH-----hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhH
Q 019679 77 -LSSDSSQHV--RSALATVIMGMAPILGKDATIEQLLPIFLS-----LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 148 (337)
Q Consensus 77 -l~~d~~~~v--r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 148 (337)
+-...+..- |...+....... -+.....+.++..+.. --+|-.+++|..+++.|+...+.++.-.+....
T Consensus 250 eaEr~k~r~~rarle~Ll~~r~et--qe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsY 327 (1048)
T KOG2011|consen 250 EAERNKSRGNRARLESLLMLRKET--QEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSY 327 (1048)
T ss_pred HHHhcccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchH
Confidence 111111111 222222222222 2222222333333332 347999999999999999999998877777788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhHhHhhh---C-hhhHHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHH
Q 019679 149 LPAIVELAEDRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM 223 (337)
Q Consensus 149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 223 (337)
+..+-..+.|++..||..++.++..+.+.- + -+.|.+.+-.-++++. .|-+..||...+..+-.... ...+.
T Consensus 328 LKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~---~g~L~ 404 (1048)
T KOG2011|consen 328 LKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS---SGLLS 404 (1048)
T ss_pred HHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc---ccccC
Confidence 899999999999999999999999988772 1 2234445555555555 77888898887766554421 11111
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISL 251 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~ 251 (337)
..=+-.+..++-|.+.+++.++...+..
T Consensus 405 d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 405 DKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 2233445567777888888887766543
No 163
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.35 E-value=0.0015 Score=43.85 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=55.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
+......++|+.+-+|..++..|.++.+.-+ .....+.++..+...++|+++.|-.+|++++..++...+ +.++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHH
Confidence 4445566677777788888887777777665 444456677777777777777777777777777776554 2345
Q ss_pred HHHHHhhcC
Q 019679 111 PIFLSLLKD 119 (337)
Q Consensus 111 ~~l~~~l~d 119 (337)
|.+.+...|
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 555554443
No 164
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.27 E-value=0.14 Score=46.77 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=85.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--------HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 103 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 103 (337)
+..+.+++.++.-..|-..++.++.+......+. ....++..+.+-++|.+|.+|..+++.+.++...-...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4567788888889999999999999988765442 33557788888899999999999999999887643322
Q ss_pred h-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679 104 A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 104 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 138 (337)
. ...++.......+.|.+..||+.|++-+..+.-.
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 2 2467888899999999999999999998877543
No 165
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.26 E-value=0.0085 Score=54.26 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhc
Q 019679 179 GVGFFDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLA 253 (337)
Q Consensus 179 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~ 253 (337)
|.......+.|++.+.... .++++..+|.-++.++... +.++. ..-+|.+...+. ++++++|..++..++.+.
T Consensus 885 GeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMCl-S~~fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~ 962 (1128)
T COG5098 885 GEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCL-SFEFC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFL 962 (1128)
T ss_pred chhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHH-hHHHH-HHHHHHHHHHHhhCCCcceeccceeeccccc
Confidence 5556667788888888876 7788999999999988764 34443 445677766665 889999999998888877
Q ss_pred cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 254 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
-.+.. +.+..-.++...|.|.+..||+.+.-++..+.-. | +.-..--++.+..++.|++.++...|...+..+++.
T Consensus 963 vcfN~--~~de~t~yLyrrL~De~~~V~rtclmti~fLila-g-q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 963 VCFNT--TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-G-QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred eehhh--hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-c-ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 55543 4566778899999999999999999888877421 1 111123455566788899998888888888777654
No 166
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.25 E-value=0.088 Score=45.59 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc------cccchHHHHHHHHHHHHHHHHh--------------C-h
Q 019679 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL------KDKVYSIRDAAANNVKRLAEEF--------------G-P 219 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~~~~~~--------------~-~ 219 (337)
...|.++.+.+..+++..+... .+.+...+...+ ...+|.-+.+|+..++.++... . .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 4455566666666666554432 122222222222 2355666666666666654322 0 2
Q ss_pred HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHH
Q 019679 220 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 288 (337)
Q Consensus 220 ~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 288 (337)
+.+...++|-+. --.+..+-+|..|++.+..+...++++ ....++|.+...|.+++.-|+.-|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 444555666665 223345667777777777777777665 4446777788888777777777776653
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.24 E-value=0.0075 Score=45.83 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=86.7
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhc---Ccc
Q 019679 26 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGM---API 99 (337)
Q Consensus 26 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l---~~~ 99 (337)
...+.++|.+.+.+.+.+.-.|-.|...+..+.+..+.+ .+...+++.+++.++..++.|...++++|..+ ...
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 345679999999999999999999999999998883443 34566777788899999999999999999999 777
Q ss_pred cChhh--HHhhhHHHHHHhhcC-----------CChhHHHHHHHhHHHhHhhhchhhH
Q 019679 100 LGKDA--TIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIGIDLL 144 (337)
Q Consensus 100 ~~~~~--~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~l~~~~~~~~~ 144 (337)
.|+.. ...+++|.+--+.+. ....++...-.+|..+-+.-|++.+
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 77543 235666666533322 2245666666666666666666544
No 168
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.23 E-value=0.019 Score=43.70 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcCcchHHHHHHHHHHHHh---ccccC
Q 019679 184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLL---APVMG 257 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l---~~~~~ 257 (337)
.+.++|+++..+.+....-|-.|...+..+.+.-+.+.+ .+++++.+...++.++..+..+++.++..+ ....|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467999999999999888899999999999887344433 567888888999999999999999999999 66666
Q ss_pred hH--HHHhhHHHHHHhhccC-----------CChhHHHHHHHHHHHHhhhhcHH
Q 019679 258 SE--ITCSQLLPVVINASKD-----------RVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 258 ~~--~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
.. ++..+++|.+.-+.+. ....++.-...+|..+-..-|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 44 3455677777633221 22455555556666664444444
No 169
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.064 Score=44.99 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHH
Q 019679 158 DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLE 232 (337)
Q Consensus 158 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~ 232 (337)
..+..-|..++..+..+++.++... ..-..++.++..+++++..+|+.|+..++...+.... + .+....++.+..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 3455667777777777777664332 2222344445588888888898888888888776432 1 112234555555
Q ss_pred hhc-CcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccC--CChhHHHHHHHHHHHHhhhhcHH--HHH-Hh
Q 019679 233 MIN-NPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS--VVE-KS 303 (337)
Q Consensus 233 ~~~-~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~~--~~~-~~ 303 (337)
.+. +.+.++|..++.+++.+...+.. .++.-.=...+...+.+ .+...+..++..++.+.+.-..+ ... ..
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 554 45577888888888888765542 22222334556666666 44555566666666665432221 111 12
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
+...+..+..--+.+++..+..++-...+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 222223344444556666666666555443
No 170
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.15 E-value=0.038 Score=50.13 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=146.7
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhH--HhcC-----CCcHHHHHHHHHHHHhcCcccCh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALATVIMGMAPILGK 102 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~--~l~~-----d~~~~vr~~a~~~l~~l~~~~~~ 102 (337)
+.++.+.-...|++.+|...|-..|-++...+....+.+.+...+. .... -.++.+|.-.+..|.+=....
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-- 314 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-- 314 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH--
Confidence 5666666677899999999999999888776666666666666554 2111 245677777777666522111
Q ss_pred hhHHhhhHHHHHHhhcCC--ChhHHHHHHHhH---HHhHhhhchhhH---HhhHHHHHHHHhc--------CCchHHHHH
Q 019679 103 DATIEQLLPIFLSLLKDE--FPDVRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLA 166 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~llp~l~~~~~--------d~~~~vr~~ 166 (337)
.....++.++...+.+. +..+|..+++-+ ......+++..+ .+.++..+.+.++ ..+...|..
T Consensus 315 -~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 315 -TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred -hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 01245666677777666 678888888888 888777775433 3334444444442 245679999
Q ss_pred HHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH-----HHhh-HHHHHHHhhcCcch
Q 019679 167 IIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-----AMQH-IVPQVLEMINNPHY 239 (337)
Q Consensus 167 ~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-----~~~~-l~~~l~~~~~~~~~ 239 (337)
+.++++.+++....-. -.-.++..++..|+++.+++|.+.-.+|+.+...+.... .... +.-.+.....+...
T Consensus 394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 9999999998875533 224688888888899999999999999998888774311 1111 22222333344557
Q ss_pred HHHHHHHHHHHHhcc
Q 019679 240 LYRMTILQAISLLAP 254 (337)
Q Consensus 240 ~vR~~~~~~l~~l~~ 254 (337)
.+|..++++...+-.
T Consensus 474 ~~R~~avk~an~~fp 488 (501)
T PF13001_consen 474 SCRYAAVKYANACFP 488 (501)
T ss_pred HHHHHHHHHHHHhCC
Confidence 788888888777544
No 171
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.21 Score=46.16 Aligned_cols=304 Identities=15% Similarity=0.132 Sum_probs=168.3
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--------HHHHh-hhHhhHHhcCC------C----------cHHH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQH-ILPCVKELSSD------S----------SQHV 85 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~~~~~-ll~~l~~l~~d------~----------~~~v 85 (337)
++|.+.+.+.|+++++-....-.+......+.+. ...+. ++...++++-| . ...+
T Consensus 336 ~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~ 415 (980)
T KOG2021|consen 336 IVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEV 415 (980)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHH
Confidence 6888888888877777666665555443332211 11222 33334443321 1 1356
Q ss_pred HHHHHHHHHhcCcccChhhHHhhhHHHHHHhh---cCCChhHHHHHHHhHHHhHhhhchh------------hHHhhHHH
Q 019679 86 RSALATVIMGMAPILGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGID------------LLSQSLLP 150 (337)
Q Consensus 86 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~llp 150 (337)
|+..-..+..++..-+ +.....+-..+...+ +.++...-+.|+.-+-.+++....+ .....+++
T Consensus 416 RkkLk~fqdti~~idp-sl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ 494 (980)
T KOG2021|consen 416 RKKLKNFQDTIVVIDP-SLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNEL 494 (980)
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHH
Confidence 6665555544444332 444444444444433 3455677788888888888775432 12234444
Q ss_pred HHH--HHhcCCchHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHH--HHccccchHHHHHHHHHHHHHHHHhChHH--HH
Q 019679 151 AIV--ELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCM--QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AM 223 (337)
Q Consensus 151 ~l~--~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~ 223 (337)
.+. ....++++.|.-...+.+.+..+.+..+. +.+-++..++ ..+...+..||..|...+.++.+.+.... +.
T Consensus 495 ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfi 574 (980)
T KOG2021|consen 495 LLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFI 574 (980)
T ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 443 23577888899999999888888775542 3333333332 34556788999988888887776642211 11
Q ss_pred hhHHHHHHHhh------------------------------------------------------------------cCc
Q 019679 224 QHIVPQVLEMI------------------------------------------------------------------NNP 237 (337)
Q Consensus 224 ~~l~~~l~~~~------------------------------------------------------------------~~~ 237 (337)
+.++..+.+++ +|.
T Consensus 575 e~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde 654 (980)
T KOG2021|consen 575 EEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDE 654 (980)
T ss_pred HHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccc
Confidence 12222222222 112
Q ss_pred chHHH----HHHHHHHHHhccccCh----------HHHHhhHHHHHHhhcc--CCChhHHHHHHHHHHHHhhhhcHHHHH
Q 019679 238 HYLYR----MTILQAISLLAPVMGS----------EITCSQLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSVVE 301 (337)
Q Consensus 238 ~~~vR----~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~ 301 (337)
...+. ..++.+++.++..+.. .......++.++..+. .....+|.++-.+++++...+|++.+
T Consensus 655 ~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vl- 733 (980)
T KOG2021|consen 655 ASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVL- 733 (980)
T ss_pred cccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhh-
Confidence 22222 2344566666654421 1112233333333332 33468999999999999999998643
Q ss_pred HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
..+..++..+++|.+.+=-.--.-.|+.+..+|++
T Consensus 734 Pfipklie~lL~s~d~kEmvdfl~flsQLihkfk~ 768 (980)
T KOG2021|consen 734 PFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT 768 (980)
T ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666667788888876444445556666655543
No 172
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.11 E-value=0.011 Score=44.52 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhcCCchHH-HHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 146 QSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
...+..+...++|++-.. +..++.++..+.+..|.. .+.++++|.+++.++..+...|+.....|+.+..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344555555555554332 233455555555444433 3667777777777776666777777777666654
No 173
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.09 E-value=0.014 Score=44.66 Aligned_cols=128 Identities=21% Similarity=0.176 Sum_probs=66.8
Q ss_pred HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679 190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 269 (337)
Q Consensus 190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 269 (337)
.+.-.+.|+++.||.+|+..+..+.+.. . ..+....+.-... .+ +..++..+|.- ...+-..+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gs--k----~~L~~Ae~~~~~~-----~s----FtslS~tLa~~--i~~lH~~L 106 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGS--K----PFLAQAEESKGPS-----GS----FTSLSSTLASM--IMELHRGL 106 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHcc--H----HHHHHHHhcCCCC-----CC----cccHHHHHHHH--HHHHHHHH
Confidence 3445678999999999999999988753 1 1111111111000 00 11111111111 11122222
Q ss_pred Hhh-ccCCChhHHHHHHHHHHHHhhhhc----HHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 270 INA-SKDRVPNIKFNVAKVLQSLIPIVD----QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 270 ~~~-l~d~~~~vr~~a~~~l~~i~~~~~----~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
... ..+.+..+-...++++..+....+ +..+...+...+..+....|.+||..+.-+++.+.+..
T Consensus 107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 222 244456666677777777764421 12344556666666666677777777777777776543
No 174
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=97.09 E-value=0.067 Score=47.54 Aligned_cols=227 Identities=15% Similarity=0.138 Sum_probs=117.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchH-HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH---HHhhhHhhHHh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVV-PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKEL 77 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~l 77 (337)
|.-.+.|..++++||.++..++.... ..++ +.+...++++...-|..+...+..++........ .+.+.+.+...
T Consensus 98 d~v~r~Ri~aA~ALG~l~~~~~~~~~-~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 98 DVVIRARIAAAKALGLLLSYWPESSL-QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 44578999999999999999966554 4444 4789999999999999999999999987654311 13444555555
Q ss_pred cCCCc-----------HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc---CCC------hhHHHHHHHhHHHhHh
Q 019679 78 SSDSS-----------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK---DEF------PDVRLNIISKLDQVNQ 137 (337)
Q Consensus 78 ~~d~~-----------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~------~~vr~~a~~~l~~l~~ 137 (337)
++++. .++|..+-..+..+....- ....-+|.+-.... +.. ......+-..+..+.+
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~---~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK---VPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence 55322 2455555444444332110 00111111111111 000 0111111111222222
Q ss_pred hhchh----------hHHhhHHHHHHHH---hcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHH
Q 019679 138 VIGID----------LLSQSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIR 203 (337)
Q Consensus 138 ~~~~~----------~~~~~llp~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr 203 (337)
.++.. .-...+...+... -...+.+|+.+++.++..+... ++ ...+ ++..++..+ +.++..++
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~-KLnP-iIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PK-KLNP-IIRPLMDSIKREENELLQ 330 (441)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC-CccH-HHHHHHHHhhccccHHHH
Confidence 22211 0111222222211 2223345556655555554322 22 2334 444444444 45778999
Q ss_pred HHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhc
Q 019679 204 DAAANNVKRLAEEFGPD--WAMQHIVPQVLEMIN 235 (337)
Q Consensus 204 ~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~ 235 (337)
..++.+++.+...+-.. .-.++++.-++.++-
T Consensus 331 ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC 364 (441)
T PF12054_consen 331 QRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLC 364 (441)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhc
Confidence 99999999998776311 113456666666653
No 175
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.09 E-value=0.0069 Score=45.62 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh-hcCcchHHHHHHHHHHHHhccc-cCh
Q 019679 182 FFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPV-MGS 258 (337)
Q Consensus 182 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~vR~~~~~~l~~l~~~-~~~ 258 (337)
.-++++++.+++.++. .++.+|..+++.+|.++- +++-.+.. +....... -.+.+........ ...... ...
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~-~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~e 80 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKS-IQKSLDSKSSENSNDESTDISL---PMMGISPSSE 80 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhc-ccccCCccccccccccchhhHH---hhccCCCchH
Confidence 3457899999998875 468999999999998753 44432210 10000000 0111111111111 111111 234
Q ss_pred HHHHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 259 EITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 259 ~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
+++....+..+...++|+.. .-..++++++-.+.+..|.. .+..+++|.+.......+...|....+-|+.+....
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 55666778888999999874 44556778877777666554 567889999999888777789999888888887654
No 176
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.06 E-value=0.016 Score=38.96 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=58.4
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhhC-hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHH
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 230 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 230 (337)
..+.+.|+...+|..++..+..++.... .....+.++.+++..++|+++-|=-.|++++..++..++. .++|.+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 3445567777788777777777777666 4445677888888888888888888888888888876632 366666
Q ss_pred HHhhcCc
Q 019679 231 LEMINNP 237 (337)
Q Consensus 231 ~~~~~~~ 237 (337)
++.+.+.
T Consensus 83 ~~~y~~~ 89 (92)
T PF10363_consen 83 LDEYADP 89 (92)
T ss_pred HHHHhCc
Confidence 6665553
No 177
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.06 E-value=0.12 Score=41.81 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=117.1
Q ss_pred hHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHH
Q 019679 74 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 153 (337)
Q Consensus 74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~ 153 (337)
+.++.+.+++++....++++..++..-. .....++..+..+........+..+...+..+.+.-. ..+ +.+-+.+.
T Consensus 6 ~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-~~L~~~L~ 81 (234)
T PF12530_consen 6 LYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-PFLQPLLL 81 (234)
T ss_pred HHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-HHHHHHHH
Confidence 3447777888888888888888886442 2334556666666666666666666666666665421 111 22222222
Q ss_pred H---------HhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHH
Q 019679 154 E---------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM 223 (337)
Q Consensus 154 ~---------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 223 (337)
. .-++..|....+.+..+..++...+. ....+++.+...+ ++.++.++..++.++..+++.--.+.
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~-- 157 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF-- 157 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH--
Confidence 2 12355677777777777777776655 4567888888999 78888999999999999984321121
Q ss_pred hhHHHHHHHhhc-CcchHHHHHHHHHHHHhcccc-Ch---HHHHhhHHHHHHhhccCCCh
Q 019679 224 QHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVM-GS---EITCSQLLPVVINASKDRVP 278 (337)
Q Consensus 224 ~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~-~~---~~~~~~l~~~l~~~l~d~~~ 278 (337)
......+...+. +..+.+-...+..+..+...- .. +.+...++..++++......
T Consensus 158 ~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 158 YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 122223333332 223344443444444433221 11 23456788888888776664
No 178
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=97.03 E-value=0.15 Score=42.69 Aligned_cols=180 Identities=17% Similarity=0.146 Sum_probs=130.9
Q ss_pred hHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHh---hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679 109 LLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-- 182 (337)
Q Consensus 109 l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~---~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 182 (337)
+-..+.+++.-.= ..|...|++....+.+.+|++.+.+ ...|.+..+....+.+||-..++.+....-.+|+..
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p 134 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP 134 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence 4444555554333 4799999999999999999876643 357778888888888999999999998887777732
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-----
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG----- 257 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----- 257 (337)
...-++..++..++|++.++-+.+...+..+...+|.+.+.+.+.-.+. .+..+|..|+.++..--....
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~ 209 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELS 209 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccc
Confidence 2234555556677899999999999999999999988754444433332 356699999888877543333
Q ss_pred -h-H---HH----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 258 -S-E---IT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 258 -~-~---~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
. + .. ..-++..+...+.|++.-|++.+...|-.-..
T Consensus 210 ~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 210 LSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred cchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 0 0 00 23477889999999999999999888766643
No 179
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.16 Score=41.75 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=44.4
Q ss_pred Hhhc-----cCCChhHHHHHHHHHHHHhhhh-cHHHH-HHhhhHHHHhh-hCCCCccHHHHHHHHHHHHHH
Q 019679 270 INAS-----KDRVPNIKFNVAKVLQSLIPIV-DQSVV-EKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 270 ~~~l-----~d~~~~vr~~a~~~l~~i~~~~-~~~~~-~~~i~~~l~~l-~~d~~~~vr~~a~~al~~l~~ 332 (337)
++++ .++++.+|...+.++-.++.+- |.+.+ ...+-|++..+ ...+++++|..+-+....+..
T Consensus 245 LQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 245 LQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 4666 3778899999999998887654 33333 34577777775 345788899888777776654
No 180
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.95 E-value=0.36 Score=45.58 Aligned_cols=212 Identities=13% Similarity=0.105 Sum_probs=135.4
Q ss_pred CChHHHHHHHHHhHHHHHHh--hCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc
Q 019679 41 DNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 118 (337)
Q Consensus 41 d~~~~vR~~a~~~l~~~~~~--~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 118 (337)
++.|..-..+..+++.+.+. ..+......+--.+..+..|..+-+|..++..+...+..-.-......++..+.++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence 34566656777888888776 3333333223334455667888899999999988887432222344678888899999
Q ss_pred CCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHh--cCCchHHHHHHHHHhhHhHhh---hChhhHHHHHHHHH
Q 019679 119 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQ---LGVGFFDDKLGALC 191 (337)
Q Consensus 119 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l 191 (337)
+.+.+|-...+.++..+++.-... .....+.|.+..+. ..+++.|-..+-.++..+++. .|+ ..+..+|.+
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPsl 618 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSL 618 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHH
Confidence 999999999999999888764322 12344666555443 123345655555566555554 343 456788988
Q ss_pred HHHccccc----hHHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhcc
Q 019679 192 MQWLKDKV----YSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAP 254 (337)
Q Consensus 192 ~~~l~d~~----~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~ 254 (337)
...+.-+. ...-..++..|..+.+.-.+ +.+....+|.+.++.-+.. -..-+.+-+|+..+..
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 88887655 45566666677766665432 2345667888888776543 4455666677766643
No 181
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.42 Score=46.38 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=95.9
Q ss_pred cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH---hCh-HHHHhhHHHHHHH
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE---FGP-DWAMQHIVPQVLE 232 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~~~-~~~~~~l~~~l~~ 232 (337)
.|-.+.+|..+++.++..++.++......-++..+-..|.|.+..||..++++|..+... .+. +.+.+.+-..+++
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 688899999999999999999988887778888888899999999999999999998876 111 2345556667777
Q ss_pred hh-cCcchHHHHHHHHHHHHhc--cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHH
Q 019679 233 MI-NNPHYLYRMTILQAISLLA--PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 290 (337)
Q Consensus 233 ~~-~~~~~~vR~~~~~~l~~l~--~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 290 (337)
+. .|.+..||...+..+.... ..+..+ =+-.+..++-|.++.++.+|...+..
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d~-----di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSSGLLSDK-----DILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcccccChh-----HHHHHHHHHhccCcchHHHHHHHHHH
Confidence 77 5567888887776666552 222222 22344566778888888888765443
No 182
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.90 E-value=0.037 Score=47.42 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC-------chHHHHHHHHHhhHhHhh--hCh
Q 019679 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGV 180 (337)
Q Consensus 110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~-------~~~vr~~~~~~l~~l~~~--~~~ 180 (337)
...+.+.+.+.+...|..|+.+|..=. | ...++|.+..++.+. +...-......+..+... +.-
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~tD~---g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRTDP---G----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCC---C----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 344555556667777777776654322 2 256777777665432 233333333333334332 233
Q ss_pred hhHHHHHHHHHHHHc----------cccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcc--hHHHHHHH
Q 019679 181 GFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTIL 246 (337)
Q Consensus 181 ~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~--~~vR~~~~ 246 (337)
+.+...++|.++.++ .+..|.+|+.|+..++.++..++.. .+...+...+...+.|+. ...+..|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 456777888888766 3466899999999999999888754 234456656666666543 45577777
Q ss_pred HHHHHhc
Q 019679 247 QAISLLA 253 (337)
Q Consensus 247 ~~l~~l~ 253 (337)
..+..++
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 7777654
No 183
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.86 E-value=0.03 Score=48.00 Aligned_cols=133 Identities=18% Similarity=0.236 Sum_probs=90.2
Q ss_pred HHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc-------chHHHHHHHHHHHHhc--cccChHHHH
Q 019679 192 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP-------HYLYRMTILQAISLLA--PVMGSEITC 262 (337)
Q Consensus 192 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~vR~~~~~~l~~l~--~~~~~~~~~ 262 (337)
.+.+.+.+...|..|+..|.. +...+.++|.+..++.+. +...-...++.+.+|. ..+..+.+.
T Consensus 184 t~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 184 TEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 334445677778887777652 333567888888888653 4444445556666664 344566777
Q ss_pred hhHHHHHHhhc----------cCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCC-c-cHHHHHHHHHH
Q 019679 263 SQLLPVVINAS----------KDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD-V-DVRFFATQALQ 328 (337)
Q Consensus 263 ~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~-~-~vr~~a~~al~ 328 (337)
..++|.++.++ .+.++.+|.-|+..++.++..++.. .....+...+.+.+-|+. + ...+-|..+|.
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 78999988776 3566899999999999999998865 334556656666444433 3 34788888887
Q ss_pred HHH
Q 019679 329 SKD 331 (337)
Q Consensus 329 ~l~ 331 (337)
.+.
T Consensus 337 ~lG 339 (343)
T cd08050 337 ALG 339 (343)
T ss_pred HhC
Confidence 765
No 184
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.85 E-value=0.18 Score=40.71 Aligned_cols=199 Identities=16% Similarity=0.161 Sum_probs=118.7
Q ss_pred HHHHH-hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679 111 PIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 189 (337)
Q Consensus 111 ~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 189 (337)
|.+.. +-+.+++.+....++++..++..-. ...+.++..+..+.+..+...+..+...+..+-..-+.. .+.+-+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~ 78 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQP 78 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHH
Confidence 44443 6667889999999999999887632 334566677777777766666666666666555443221 133333
Q ss_pred HHHH---------HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhh-cCcchHHHHHHHHHHHHhccccChH
Q 019679 190 LCMQ---------WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE 259 (337)
Q Consensus 190 ~l~~---------~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~ 259 (337)
.+.. .-++..++...+...++..++...+. .-..+++.+..++ .+.+...+..+++++..+++.---+
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd 156 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD 156 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc
Confidence 3332 11345667777777788888877643 4556899999999 6777888888999998887322111
Q ss_pred HHHhhHHHHHHhhc-cCCChhHHHHHHHHHHHHhhh-h---cHHHHHHhhhHHHHhhhCCCCc
Q 019679 260 ITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPI-V---DQSVVEKSIRPCLVELSEDPDV 317 (337)
Q Consensus 260 ~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~-~---~~~~~~~~i~~~l~~l~~d~~~ 317 (337)
+. .....+.+-+ .|..+.|-...+..+..+... . ..+.+...++..+-++....+.
T Consensus 157 -~~-s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 157 -FY-SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred -HH-HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 11 1222222222 344455554444333333211 1 1224566788888887776664
No 185
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=96.84 E-value=0.032 Score=41.47 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHH
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 84 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~ 84 (337)
+.||...+.++..++...-|+. |+.+++.+.+.++. ++......+..|..+.+.+... .-.+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~------------~~~~~~~~ 67 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDF------------RRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTS------------HCCHSHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhh------------hchhhhHH
Confidence 3589999999999999987776 68899999999876 5666667777776665543210 00111222
Q ss_pred HHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC----hhHHHHHHHhHHHhHhhhchhhHHh-hHHHHHHHHhcCC
Q 019679 85 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR 159 (337)
Q Consensus 85 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~-~llp~l~~~~~d~ 159 (337)
.|...-+.+..- ...++..+.+.+.... .++...+++++....+.+..+.+.+ .+++.+.+.++++
T Consensus 68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence 333333333322 1233444444443322 6777777777777777666655443 4777777776544
Q ss_pred chHHHHHHHHHh
Q 019679 160 HWRVRLAIIEYI 171 (337)
Q Consensus 160 ~~~vr~~~~~~l 171 (337)
+- +..+++++
T Consensus 139 ~~--~~~A~~cl 148 (148)
T PF08389_consen 139 EL--REAAAECL 148 (148)
T ss_dssp CC--HHHHHHHH
T ss_pred HH--HHHHHHhC
Confidence 43 55555543
No 186
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.81 E-value=0.12 Score=44.48 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=32.1
Q ss_pred hHHHHHHHhhcCc--chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc
Q 019679 225 HIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 274 (337)
Q Consensus 225 ~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (337)
.+-..+..++-++ .|.+|..+...+..+....+.. +...++..+.+.+.
T Consensus 204 ~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 204 AWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 3455566666677 7999999998888876544433 44455566655553
No 187
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.76 E-value=0.4 Score=43.26 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=69.4
Q ss_pred HHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhC-hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh
Q 019679 187 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 264 (337)
Q Consensus 187 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 264 (337)
++..+..... ..+...-+.++..+..+..+-. |......++..++...+.. .....+-.++..+............
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i~~ 254 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAIRT 254 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHHHH
Confidence 4444444332 2333444666777776665211 2222344555555554433 3334455556666543322222233
Q ss_pred HHHHHH--hhccCCChhHHHHHHHHHHHHhhhhcHHHH------HHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 265 LLPVVI--NASKDRVPNIKFNVAKVLQSLIPIVDQSVV------EKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 265 l~~~l~--~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
+..++. .--..++..+-++|+..++.+.-..+++.+ ...++|.|...++-+++.|-......+..+.
T Consensus 255 L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 255 LCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 333331 111223345556778777777655533211 1237777777766666655555555555544
No 188
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.65 Score=44.32 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=72.8
Q ss_pred HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
...++.....++.+++.+.|..++..+..-...+.. . +......|.+...+.++++.+-..|++++.++++..|.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 455777778888999999999999888765443332 1 12335677888889999999999999999999998885
Q ss_pred ---HHHHHhhhHHHHhhhCCCC
Q 019679 298 ---SVVEKSIRPCLVELSEDPD 316 (337)
Q Consensus 298 ---~~~~~~i~~~l~~l~~d~~ 316 (337)
..+.+.++|.++.++.|..
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566889999998887643
No 189
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.58 Score=43.39 Aligned_cols=311 Identities=11% Similarity=0.047 Sum_probs=161.1
Q ss_pred CCcccchHHHHHHhcC-----C---ChHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhHHhcCCCcHHHHHHHHH
Q 019679 25 EPTRSDVVPAYVRLLR-----D---NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQHVRSALAT 91 (337)
Q Consensus 25 ~~~~~~l~~~l~~~~~-----d---~~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~~l~~d~~~~vr~~a~~ 91 (337)
+.+...+++++...+. + .++.-.+.|+..++.+.+.+++. .+.+.+++.+....+++.--.|.-+|+
T Consensus 403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 3334567787777772 1 24566777888888887754432 344456777777888999999999999
Q ss_pred HHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc-hhhHHhhHHHHHHHH---hcCCch----HH
Q 019679 92 VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVEL---AEDRHW----RV 163 (337)
Q Consensus 92 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~llp~l~~~---~~d~~~----~v 163 (337)
.+..+..-+.+....-.+.....+++++++-.|+..|+-++.-+...-. .+.+..++.+.+.++ .++-+. .+
T Consensus 483 ~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 483 FISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9999976666554556677788889999889999999999987766543 233434444444443 333222 23
Q ss_pred HHHHHHHhhHhHhhhChhhH---HHHHHHHHHHHcccc---chH--HHHHH----HHHHHHHHHHhChH-----HHHhhH
Q 019679 164 RLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDK---VYS--IRDAA----ANNVKRLAEEFGPD-----WAMQHI 226 (337)
Q Consensus 164 r~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~---~~~--vr~~a----~~~l~~~~~~~~~~-----~~~~~l 226 (337)
....++.++.=.+.++++.. ..+++.+...++..+ ... -++.+ ++++..+.-.+.+. .....+
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 33333333322222333321 122333333333322 111 12222 23333333233221 122334
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcH-----H
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQ-----S 298 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~-----~ 298 (337)
.|.+.=.+.+.....=.-++..+....- ...+ ...-.++..+.+++.++.. .--..+.-++..+...=+. .
T Consensus 643 ypvi~Filkn~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~ 721 (970)
T COG5656 643 YPVISFILKNEISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG 721 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence 4544444444332222223333332110 0011 1233455566666777664 4445666677776533211 1
Q ss_pred HHHHhhhHHHHhhhCCCCc--cHHHHHHHHHHHHHHhhhC
Q 019679 299 VVEKSIRPCLVELSEDPDV--DVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 299 ~~~~~i~~~l~~l~~d~~~--~vr~~a~~al~~l~~~~~~ 336 (337)
.+...+.......+...+. +=+..+++.+..++-.+++
T Consensus 722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 2334444444444333222 4455677776666655443
No 190
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.32 Score=40.12 Aligned_cols=255 Identities=17% Similarity=0.195 Sum_probs=130.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh-HHh
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-TIE 107 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~ 107 (337)
+-.+.+++.+.+|.||++|+..+..+... +-.. .....++-+.++..|..+ -.-++.++.+++...+-.. ..+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 44566888899999999999877766544 2221 223467778888888887 4556677777775333111 122
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---------HhhHHHHHHHHhcCCchHHH---HHHHHHhhHhH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---------SQSLLPAIVELAEDRHWRVR---LAIIEYIPLLA 175 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------~~~llp~l~~~~~d~~~~vr---~~~~~~l~~l~ 175 (337)
.++..+...+-|.....-...+..+.++.+.-+.-.. ...++.....+ -|++..-+ ...+..+..+.
T Consensus 82 ~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~-~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF-CDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH-hCcccccccchhHHHHHHHHHh
Confidence 3445555555666555555555566655544221000 01122222222 22222211 11223333343
Q ss_pred hhh-ChhhHH-HH--HHHHHHHHccccchHHHHH-HHHHHHHHHHHhChH---HH---HhhHHHHHHH------------
Q 019679 176 SQL-GVGFFD-DK--LGALCMQWLKDKVYSIRDA-AANNVKRLAEEFGPD---WA---MQHIVPQVLE------------ 232 (337)
Q Consensus 176 ~~~-~~~~~~-~~--l~~~l~~~l~d~~~~vr~~-a~~~l~~~~~~~~~~---~~---~~~l~~~l~~------------ 232 (337)
+.- |...+. ++ ....+..+-+ ....||.. .+..|...+ |+.. +. ...++|.++-
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~c--Fd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCC--FDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhh--ccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 332 222211 11 1222233333 45556543 444444422 1111 00 1123333322
Q ss_pred ---------hhc-----CcchHHHHHHHHHHHHhc-cccChHHHHh-hHHHHHHhhc-cCCChhHHHHHHHHHHHHhh
Q 019679 233 ---------MIN-----NPHYLYRMTILQAISLLA-PVMGSEITCS-QLLPVVINAS-KDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 233 ---------~~~-----~~~~~vR~~~~~~l~~l~-~~~~~~~~~~-~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~ 293 (337)
.+. +++..+|...++++-.++ +.-|.+.++. ...|++..+- ..+++.+|.++-+....+..
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 222 256889999999999985 4456666655 4666666664 34557888877666666654
No 191
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.60 E-value=0.41 Score=41.27 Aligned_cols=218 Identities=15% Similarity=0.060 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHH
Q 019679 86 RSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 164 (337)
Q Consensus 86 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr 164 (337)
|...++.+..+.. .+ ....+...+..++. +.++......+.++..-...++ ..+.+.++..+.+.++|+...+|
T Consensus 4 r~~~~~~L~~l~~-~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHhCCC-cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHhcCCCCcHH
Confidence 4555555555554 21 33444455555443 4566667777777766665552 22335677777777777777788
Q ss_pred HHHHHHhhHhHh---hhChhhHHHHHHHHHHHHcc----ccchHHH----HHHHHHHH----HHHH-----------HhC
Q 019679 165 LAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLK----DKVYSIR----DAAANNVK----RLAE-----------EFG 218 (337)
Q Consensus 165 ~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~----d~~~~vr----~~a~~~l~----~~~~-----------~~~ 218 (337)
...+..++.... ......+...++|.+.+.++ .+.+... .+++-.+. .+.. ..+
T Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 158 (339)
T PF12074_consen 79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALD 158 (339)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccC
Confidence 887777777665 11112233345555544443 2222211 12222222 0000 000
Q ss_pred hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCC--ChhHHHHHHHHHHHHhh
Q 019679 219 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 219 ~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~ 293 (337)
++. .--+-+.+...+.+ ...-.-.++++..+...+... .....+...+..++..+ .++||+.|..++..+..
T Consensus 159 ~kp-s~ll~~kvyskl~~--~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 159 PKP-SFLLSEKVYSKLAS--EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA 235 (339)
T ss_pred CCc-chhcCHHHHhccCC--HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 000 00011233333221 112222333344443322211 11344566666666666 79999999999999876
Q ss_pred hhcHHHHHHhhhHHHHhhh
Q 019679 294 IVDQSVVEKSIRPCLVELS 312 (337)
Q Consensus 294 ~~~~~~~~~~i~~~l~~l~ 312 (337)
..+.. +...++..+.+.+
T Consensus 236 ~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 236 SNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hChHH-HHHHHHHHHHHHH
Confidence 65543 4455555555543
No 192
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.38 Score=40.54 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=114.6
Q ss_pred CChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh---hHHhhhHHHHHH
Q 019679 41 DNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLS 115 (337)
Q Consensus 41 d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~ 115 (337)
..+.+-|..++..|..+++.++... +....++.+...+++++..+|..|+..++.....-++- ......++.+..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4567889999999999999887652 22234444545999999999999999999998765532 122334555555
Q ss_pred hhc-CCChhHHHHHHHhHHHhHhhhch--hhH-HhhHHHHHHHHhcC--CchHHHHHHHHHhhHhHhhhCh--hhHHHHH
Q 019679 116 LLK-DEFPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV--GFFDDKL 187 (337)
Q Consensus 116 ~l~-d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l 187 (337)
.+. |....+|..|+-++..+.....+ +.+ .-.=+..+.+..++ .+.+.+.-++..+..+.+.-.. +......
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 554 55678999999999988877543 111 11113345555555 5667777788888877665321 1222222
Q ss_pred HH-HHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679 188 GA-LCMQWLKDKVYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 188 ~~-~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 217 (337)
.+ .+..+.....+++++.++.++-.....+
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 22 3334555667788888888776665544
No 193
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.53 Score=42.07 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=116.6
Q ss_pred cCCChHHHHHHHHHhHHHHHHhhCHHH--HHHh---hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh---HHhhhH
Q 019679 39 LRDNEAEVRIAAAGKVTKICRILNPEL--AIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLL 110 (337)
Q Consensus 39 ~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~---ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~ 110 (337)
....+.+-+++..+.+..+++...... ..+. ++..+.-....++++|-+........+.+..-... ...-.-
T Consensus 256 ~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~fr 335 (559)
T KOG2081|consen 256 MAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFR 335 (559)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhH
Confidence 344556667777777777776542221 0112 22333334566777777777777777765432211 112223
Q ss_pred HHHHHhh-------------------cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679 111 PIFLSLL-------------------KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 171 (337)
Q Consensus 111 ~~l~~~l-------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l 171 (337)
|++.+++ .++..+.|..+...+..+.-.+|.+.-.+.+.-.+.+ +..+|+.-++++..+
T Consensus 336 py~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l 413 (559)
T KOG2081|consen 336 PYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFIL 413 (559)
T ss_pred HHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 4444433 1122467888888888888888876554444444433 577899999999999
Q ss_pred hHhHhhhChhhHHHHHHHHHHHHcc--ccchHHHHHHHHHHHHHHHHhChHH-HHhhHHHHHHHhhcCcc
Q 019679 172 PLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLEMINNPH 238 (337)
Q Consensus 172 ~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ 238 (337)
..+++...++. +.++|-+++++. +....+|..++..+|.+.+.+..+. ..+.++..+...+....
T Consensus 414 ~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~ 481 (559)
T KOG2081|consen 414 RAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR 481 (559)
T ss_pred HHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc
Confidence 99999886653 335555555443 2344599999999999988875432 23344555555555443
No 194
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.71 Score=43.16 Aligned_cols=276 Identities=14% Similarity=0.101 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhCCCC-----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC-cHHH
Q 019679 12 ANQLYELCEAVGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHV 85 (337)
Q Consensus 12 ~~~l~~~~~~~~~~~-----~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~-~~~v 85 (337)
-.++|..+..+.... ..+.++|.+. .-.++.--+|+..+..++...+.--+.+....+...+.++++|. +-.|
T Consensus 465 Yaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV 543 (978)
T KOG1993|consen 465 YAAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVV 543 (978)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCcccccee
Confidence 344555554444322 2235677765 22345567899999999988876555566666667778899998 6689
Q ss_pred HHHHHHHHHhcCcccC--hhhHH---hhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchh--hHHhh---HHHHHHH
Q 019679 86 RSALATVIMGMAPILG--KDATI---EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID--LLSQS---LLPAIVE 154 (337)
Q Consensus 86 r~~a~~~l~~l~~~~~--~~~~~---~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~---llp~l~~ 154 (337)
|.+++.++..+..-+. ++.+. +.+...+.+++.. ..-+.|...+..++.+....++. ..... ++|.+.+
T Consensus 544 ~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe 623 (978)
T KOG1993|consen 544 RLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWE 623 (978)
T ss_pred ehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999998876433 22221 2222333344433 33567777888887777766532 22233 4444444
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchH---HHHHHHHHHHHHHHHh---ChHHHHhhH
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYS---IRDAAANNVKRLAEEF---GPDWAMQHI 226 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~~~~~~---~~~~~~~~l 226 (337)
-.+ +..-.|.+.+..+..++..+|... +.+.+.|++-....=.+++ .-+.+....+.+.... .++ .-.+
T Consensus 624 ~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~--ll~L 700 (978)
T KOG1993|consen 624 ESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPE--LLLL 700 (978)
T ss_pred hhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHH--HHHH
Confidence 433 556799999999999999987654 5566777764433323332 2333333333333222 222 2246
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
+|++...+.-.....| +++..+.+-.-.-+.. |.+...-.+.+.+.+--..||.....++-.+.+
T Consensus 701 ~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avLkive 765 (978)
T KOG1993|consen 701 FPHLLYIIEQSTENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVE 765 (978)
T ss_pred HHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777666664444444 3444444433222333 333333333344444444566666555544443
No 195
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=96.51 E-value=0.15 Score=39.82 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=86.8
Q ss_pred chHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679 160 HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 237 (337)
.......++..++.+.+.+|... ....++..+.++-.+++-..|+.+-.+++.....+|++.+.. ++|.-.+. .+.
T Consensus 13 y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~ 90 (198)
T PF08161_consen 13 YQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADD 90 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCc
Confidence 33444555555666666665432 223344444455556667788888888888888888886543 44432221 111
Q ss_pred chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc---C---CChhHHHHHHHH--------HHHHhhhhc--HHHHH
Q 019679 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK---D---RVPNIKFNVAKV--------LQSLIPIVD--QSVVE 301 (337)
Q Consensus 238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d---~~~~vr~~a~~~--------l~~i~~~~~--~~~~~ 301 (337)
...-|.=.+-.+..-.......+|.++++|....+-+ + ....+.....++ |..++..-. .+.+
T Consensus 91 ~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F- 169 (198)
T PF08161_consen 91 SQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF- 169 (198)
T ss_pred CCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-
Confidence 1111211222222223334456778888887654431 1 111222211111 111221100 0123
Q ss_pred HhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 302 KSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
..+-..|.+.+.| .+++|...++||..+
T Consensus 170 ~~~a~~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 170 PSFAKLLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence 5666777777776 588999999999876
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.4 Score=44.66 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=103.6
Q ss_pred HhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc-hHHHHHHHHHhhHhHhhhChhhH
Q 019679 106 IEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGFF 183 (337)
Q Consensus 106 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~ 183 (337)
.++-++-++.-+.. .-.+=|+.|+.++..+++.+..+.....+-|.+..+-.|.. +..-..
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~----------------- 82 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKY----------------- 82 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHH-----------------
Confidence 34445555554443 34688999999999999988776665555555544444432 222222
Q ss_pred HHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHH-HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH
Q 019679 184 DDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 261 (337)
Q Consensus 184 ~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~ 261 (337)
.++.+...+ .|+++.|-+..- --..++..+....+ .+..+..++..+...+++||..++..+..+...-|.+.-
T Consensus 83 ---~LdTl~il~~~dd~~~v~dds~-qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q 158 (970)
T KOG0946|consen 83 ---ALDTLLILTSHDDSPEVMDDST-QSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ 158 (970)
T ss_pred ---HHHHHHHHHhcCcchhhcccch-hhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH
Confidence 233333322 233344433222 11112222211111 345677888888888999999999999999877776532
Q ss_pred -----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 262 -----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 262 -----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
.+.-+.-+..++.|....+|..++-.|..+.+..+
T Consensus 159 ~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 159 DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 23445667888899999999999998888876544
No 197
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=1.2 Score=44.67 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHhCC----CCcccchHHHHHHhc-----CCChHHHHHHHHHhHHHHHHhhCHH-----H----HHHh
Q 019679 8 RYMVANQLYELCEAVGP----EPTRSDVVPAYVRLL-----RDNEAEVRIAAAGKVTKICRILNPE-----L----AIQH 69 (337)
Q Consensus 8 R~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~-----~d~~~~vR~~a~~~l~~~~~~~~~~-----~----~~~~ 69 (337)
.-..++.|..++..+.. ......+.|....++ .++|..||...+-|+..+...+.|+ . +.+.
T Consensus 19 ~~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~ 98 (1266)
T KOG1525|consen 19 KDELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQL 98 (1266)
T ss_pred HHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 34455556666555432 233456777776665 4578899999999999999887665 1 2222
Q ss_pred hhHhhHHhcCCCcH--HHHHHHHHHHHhcCc-----ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh
Q 019679 70 ILPCVKELSSDSSQ--HVRSALATVIMGMAP-----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 142 (337)
Q Consensus 70 ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~-----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 142 (337)
++..+..+..-.+| .-+...++.+..+.. ....+.....+...+..+..+..+.--..-..-+..+... .+
T Consensus 99 ~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e--~d 176 (1266)
T KOG1525|consen 99 ILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITE--ED 176 (1266)
T ss_pred HHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hc
Confidence 33333323222333 444455555544331 1111222334444555555554443322211111122111 12
Q ss_pred hHHhhHHHHHH----HHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-ccc--chHHHHHHHHHHHHHHH
Q 019679 143 LLSQSLLPAIV----ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDK--VYSIRDAAANNVKRLAE 215 (337)
Q Consensus 143 ~~~~~llp~l~----~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~--~~~vr~~a~~~l~~~~~ 215 (337)
.....++..+. +--.+....-+..+-..+...+...... +-..+...+ .+. ...++.-.-..+-.+..
T Consensus 177 ~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-----i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~ 251 (1266)
T KOG1525|consen 177 TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-----IANFLNSCLTEYKSRQSSLKIKYHELILELWR 251 (1266)
T ss_pred cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-----HHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 22223333332 2223333344444444444444333221 222222211 121 12223332333333332
Q ss_pred HhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH--HhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 216 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 216 ~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
.. ++ ..-.++|.+..-+...+-.+|..|...+|.+...-+...+ .+.++..++..+.|.+.+||.++++....+.-
T Consensus 252 ~~-p~-ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 252 IA-PQ-LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred hh-HH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 21 22 2446889998888989999999999999998654433322 45678888889999999999999998887754
Q ss_pred h
Q 019679 294 I 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 330 ~ 330 (1266)
T KOG1525|consen 330 N 330 (1266)
T ss_pred c
Confidence 4
No 198
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.39 E-value=0.25 Score=43.92 Aligned_cols=139 Identities=13% Similarity=0.162 Sum_probs=91.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC--------chHHHHHHHHHhhHhHhhh--
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQL-- 178 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~--------~~~vr~~~~~~l~~l~~~~-- 178 (337)
...-+.+.+.+.++..|..|+++|..=.. .+.++|.+..++.+. +-..-.........+.++-
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TDsG-------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETDSG-------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCcc-------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34455666667889999999988765332 267888888777542 1112222222222332221
Q ss_pred ChhhHHHHHHHHHHHHc----------cccchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcCc--chHHHHH
Q 019679 179 GVGFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMT 244 (337)
Q Consensus 179 ~~~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~~--~~~vR~~ 244 (337)
.-+.+..+++|.++.++ .|..|.+|.-|+..+..++..++... ....++..+...+.|+ .+..+..
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 23446678888888765 36789999999999999999997542 3445666667777775 4888888
Q ss_pred HHHHHHHhcc
Q 019679 245 ILQAISLLAP 254 (337)
Q Consensus 245 ~~~~l~~l~~ 254 (337)
++..+..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 8888887654
No 199
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.32 E-value=0.12 Score=43.16 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh---HH-----hhhHHHHHHhhc--------CCChhHHHHH
Q 019679 65 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TI-----EQLLPIFLSLLK--------DEFPDVRLNI 128 (337)
Q Consensus 65 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~l~--------d~~~~vr~~a 128 (337)
.....++|.+..++.|.++.+|..++.++..+....+... .. +.+.+.+..++. +++..+-..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 3445688989999999999999999999999887666444 21 233334444443 5556666677
Q ss_pred HHhHHHhHhhhch-------hhHHhh----HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc
Q 019679 129 ISKLDQVNQVIGI-------DLLSQS----LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL 195 (337)
Q Consensus 129 ~~~l~~l~~~~~~-------~~~~~~----llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l 195 (337)
..++-.+.+.... ..+.+. ++..+.-..+-++..++...++.+..+...+|... +...++|.+.+.+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 7777666554210 011111 11111111111235566666666666666655443 4455666666665
Q ss_pred ccc
Q 019679 196 KDK 198 (337)
Q Consensus 196 ~d~ 198 (337)
+++
T Consensus 275 ~np 277 (282)
T PF10521_consen 275 ENP 277 (282)
T ss_pred cCC
Confidence 554
No 200
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.76 Score=41.14 Aligned_cols=208 Identities=15% Similarity=0.080 Sum_probs=127.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCc-----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---H----HHHh--
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPT-----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---L----AIQH-- 69 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~----~~~~-- 69 (337)
+..-+.+.++.+..++..+-.... .-.++..+.-....++.+|-+++....-.+.+.+... . +..+
T Consensus 260 d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~ 339 (559)
T KOG2081|consen 260 DLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFL 339 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHH
Confidence 344566777777777765532111 1134444555557788888888888877777654321 1 1122
Q ss_pred -hhHhhHHhc----------C--CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679 70 -ILPCVKELS----------S--DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 136 (337)
Q Consensus 70 -ll~~l~~l~----------~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 136 (337)
++..+..-+ + ++....|......+..++..+|.+.....+.-.+.+ ..+.++.-++++-.+..++
T Consensus 340 rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~ 417 (559)
T KOG2081|consen 340 RLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVA 417 (559)
T ss_pred HHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHh
Confidence 222222211 1 223478888888888888888876544433333333 3567899999999999999
Q ss_pred hhhchhhHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679 137 QVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRL 213 (337)
Q Consensus 137 ~~~~~~~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 213 (337)
+.+.++. +.++|.+.+.+- +....+|..++..++.+.+...... +.+-++..+.+.+.+.. ...+++.++..+
T Consensus 418 ~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i 493 (559)
T KOG2081|consen 418 KNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRI 493 (559)
T ss_pred ccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHH
Confidence 9887643 456666666553 2334599999999999998885543 34445555566666554 444455555555
Q ss_pred HHHh
Q 019679 214 AEEF 217 (337)
Q Consensus 214 ~~~~ 217 (337)
+...
T Consensus 494 ~~~c 497 (559)
T KOG2081|consen 494 CSAC 497 (559)
T ss_pred HHHH
Confidence 5443
No 201
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=96.20 E-value=0.025 Score=38.07 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~--~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~ 75 (337)
|..|.+|..+++.++.++..++... ..+.+...+.+.+.|++ ......|+..|..++. +.+...++|.+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~----~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP----EAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----HHHHHhhccCcC
Confidence 6789999999999999999988643 35678888888888764 5577788888876643 444455666543
No 202
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.17 E-value=0.41 Score=42.69 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=88.0
Q ss_pred HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc--------chHHHHHHHHHHHHhcc--ccChHHHHh
Q 019679 194 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAP--VMGSEITCS 263 (337)
Q Consensus 194 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~vR~~~~~~l~~l~~--~~~~~~~~~ 263 (337)
.+.+.+...|..|+.+|.. +.-.+.++|.+..++.+. +.+.-...++..-+|.. .+-.+.|..
T Consensus 215 a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 215 ACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 3344777788888888763 333567888888888752 33344445555555543 334566777
Q ss_pred hHHHHHHhhc----------cCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCC--CccHHHHHHHHHHH
Q 019679 264 QLLPVVINAS----------KDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDP--DVDVRFFATQALQS 329 (337)
Q Consensus 264 ~l~~~l~~~l----------~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~ 329 (337)
.++|.++.++ .|.++.+|.-|+..+..+++.++..+ ....+...+.+.+.|. .+...+-++..|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 8888887665 46678899999999999998888653 3345666666655553 56677788877776
Q ss_pred HHH
Q 019679 330 KDQ 332 (337)
Q Consensus 330 l~~ 332 (337)
+..
T Consensus 368 lg~ 370 (576)
T KOG2549|consen 368 LGH 370 (576)
T ss_pred hhh
Confidence 643
No 203
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=96.12 E-value=1.1 Score=41.09 Aligned_cols=269 Identities=10% Similarity=0.103 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcCCCcHHHH
Q 019679 10 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVR 86 (337)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr 86 (337)
..+..+..+...+++. .++++-..+.+-+-.++.-....+.+...-++.+-..+. +...+...++.+..+.-..
T Consensus 247 ~vl~~Lctfi~~~~~s-~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~-- 323 (559)
T PF14868_consen 247 HVLVHLCTFIASLSPS-AFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQL-- 323 (559)
T ss_pred HHHHHHHHHHHhCCHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhH--
Confidence 4566777777666666 578888888888888999999999999888887655553 3344455555555333322
Q ss_pred HHHHHHHHhcCcccChhhHHhhhH------------HHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHH
Q 019679 87 SALATVIMGMAPILGKDATIEQLL------------PIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 153 (337)
Q Consensus 87 ~~a~~~l~~l~~~~~~~~~~~~l~------------~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~ 153 (337)
......++++.....++.. ..++ +.+..+.-+ -.+..|..+...+...+ ...+.
T Consensus 324 ~~L~~LL~Rl~~~m~~~~q-~~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~------------~~~~~ 390 (559)
T PF14868_consen 324 INLSILLRRLFFLMAPDHQ-SEFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLC------------FAFCQ 390 (559)
T ss_pred hhHHHHHHHHHHhcCHHHH-HHHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHH------------HHHHH
Confidence 2244445554443332211 1111 111111111 12233333332222211 11111
Q ss_pred HHhc--CCchHHHHHHHHHhhHhHhhh---Chhh---HHHHHHHHHH---HHccc----cchHHHH---HHHHHHHHHHH
Q 019679 154 ELAE--DRHWRVRLAIIEYIPLLASQL---GVGF---FDDKLGALCM---QWLKD----KVYSIRD---AAANNVKRLAE 215 (337)
Q Consensus 154 ~~~~--d~~~~vr~~~~~~l~~l~~~~---~~~~---~~~~l~~~l~---~~l~d----~~~~vr~---~a~~~l~~~~~ 215 (337)
+..+ ..++..=......+..+...+ +... -...++.++. ..++. ..+.+.. ..+..++.+.+
T Consensus 391 ~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~ 470 (559)
T PF14868_consen 391 KWLSPSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQ 470 (559)
T ss_pred HhcccCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHH
Confidence 1111 111111111111111111111 1000 0011222221 11110 1122222 22333344444
Q ss_pred HhChHHHHhhHHHHHHHhh-cCcchHHHHHHHHHHHHhccccChHHHHhhHHH----HHHhhccCCChhHHHHHHHHHHH
Q 019679 216 EFGPDWAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLP----VVINASKDRVPNIKFNVAKVLQS 290 (337)
Q Consensus 216 ~~~~~~~~~~l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~----~l~~~l~d~~~~vr~~a~~~l~~ 290 (337)
.+.++. ..+++-.+...+ .++...+|.+.+.+++.+++.+-.+...+.+.| .+-.+|.|+++.++..|+.+++.
T Consensus 471 ~l~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~ 549 (559)
T PF14868_consen 471 LLDPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQ 549 (559)
T ss_pred hcChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 444443 334555556666 455667888999999998877665544444444 44556789999999999999888
Q ss_pred Hhhhh
Q 019679 291 LIPIV 295 (337)
Q Consensus 291 i~~~~ 295 (337)
+++.-
T Consensus 550 FAe~T 554 (559)
T PF14868_consen 550 FAERT 554 (559)
T ss_pred HhccC
Confidence 87643
No 204
>PF05536 Neurochondrin: Neurochondrin
Probab=96.12 E-value=1.1 Score=41.20 Aligned_cols=186 Identities=20% Similarity=0.257 Sum_probs=127.1
Q ss_pred HHHHHhcCC-------ChHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhHHhcCCCcH-HHHHHHHHHHHhcCcc
Q 019679 33 PAYVRLLRD-------NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPI 99 (337)
Q Consensus 33 ~~l~~~~~d-------~~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~~~ 99 (337)
+++.+++.. +....+..|+..|..|+. +++ .+. .-+|.+.+.+...+. .+-..+.++|..++..
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~--~~~~a~~~~~~-~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~ 129 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR--DPELASSPQMV-SRIPLLLEILSSSSDLETVDDALQCLLAIASS 129 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC--ChhhhcCHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC
Confidence 445555543 446788888888888876 333 222 346777777766555 8888899999888843
Q ss_pred c-Chhh-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH------HhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679 100 L-GKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYI 171 (337)
Q Consensus 100 ~-~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~llp~l~~~~~d~~~~vr~~~~~~l 171 (337)
- |.+. .....++.+.+.+.+ .+.....++..+..+....+.+.+ ...+++.+...........+...++.+
T Consensus 130 ~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L 208 (543)
T PF05536_consen 130 PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFL 208 (543)
T ss_pred cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 2 2222 234567778777766 677888899998888877664322 235667777766666666777778888
Q ss_pred hHhHhhhCh--------hhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHH
Q 019679 172 PLLASQLGV--------GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA 222 (337)
Q Consensus 172 ~~l~~~~~~--------~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~ 222 (337)
+.+....+. ..+...+...+...+.. ..+.-|..+....+.+.+.+|.+|.
T Consensus 209 ~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 209 SAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 877666531 22455566666666655 5678899999999999999998875
No 205
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.07 E-value=0.42 Score=50.75 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=151.9
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCH--------HHHHHhhhHhh-HHhcCCCcHHHHHHHHHHHHhcCcccChhhH
Q 019679 35 YVRLLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQHILPCV-KELSSDSSQHVRSALATVIMGMAPILGKDAT 105 (337)
Q Consensus 35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--------~~~~~~ll~~l-~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 105 (337)
+..++...++++|..+..++..+...... -...+.++..+ .-...|+++.+|......+. +.+.....
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la 562 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA 562 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence 45566777899999998888877665433 11122223322 22457888888888888776 22222222
Q ss_pred HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHH--------hcCCchHHHHHHHHHhhHhHhh
Q 019679 106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL--------AEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~--------~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
....+......+.|....++..+...++.++..-. ..++|.+... .-+....+...++.-+..+...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~ 637 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS 637 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence 34555667777788888888888888887766422 2344444322 1122222333333333222221
Q ss_pred h--ChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHh
Q 019679 178 L--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH-YLYRMTILQAISLL 252 (337)
Q Consensus 178 ~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l 252 (337)
. ....+.+.++-.+...+.|++..+-.++..+++.++...|.+ ...+.+++.+.+.+.+.+ ...|.++..+++.+
T Consensus 638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 1 112223345566667788988999999999999999887733 223467788888887754 66778899999998
Q ss_pred ccccC--hHH--HHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHh
Q 019679 253 APVMG--SEI--TCSQLLPVVINASK-DRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 253 ~~~~~--~~~--~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~ 292 (337)
...-| ..+ -.+.++..+...+. .....+|.++++.++..+
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 65443 111 13345555554443 444689999999888554
No 206
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.88 E-value=0.95 Score=38.48 Aligned_cols=171 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH--HHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhC--hHH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFG--PDW 221 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~--~~~ 221 (337)
..+.++++.+++.++..++..+..+....+..... ..+++.++.++++ ++.++...++.++..+...-. ...
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 33444777788999999999999888766543322 3566666666654 556777888899888864311 111
Q ss_pred HHhhHHHHHHHhh-----cCc--chHHHHHHHHHHHHhccc--cChHHHHhhHHHHHHhhccCCC-hhHHHHHHHHHHHH
Q 019679 222 AMQHIVPQVLEMI-----NNP--HYLYRMTILQAISLLAPV--MGSEITCSQLLPVVINASKDRV-PNIKFNVAKVLQSL 291 (337)
Q Consensus 222 ~~~~l~~~l~~~~-----~~~--~~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i 291 (337)
.....++.+.+.+ .+. ..+....++.++=.++-. .-.......++|.+...+++.. +.|-+-++.++.++
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2345566666666 222 244445554444444321 1122234458899888886554 45666778888888
Q ss_pred hhhhcH----HHHHHhhhHHHHhhhCC--CCccHH
Q 019679 292 IPIVDQ----SVVEKSIRPCLVELSED--PDVDVR 320 (337)
Q Consensus 292 ~~~~~~----~~~~~~i~~~l~~l~~d--~~~~vr 320 (337)
.+.-.. ..+...+++.+..+... .|+++.
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ 302 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT 302 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence 765442 23456677788777654 255554
No 207
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.85 E-value=1.2 Score=39.57 Aligned_cols=217 Identities=9% Similarity=0.086 Sum_probs=118.3
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhch---h---hHHhhHHH
Q 019679 80 DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---D---LLSQSLLP 150 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~llp 150 (337)
-+|+.+=++.++.+..+.+...+.. ..+.+..++....+++ +|..-....++++.+.+.... + .+.+.++|
T Consensus 41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 4566676777777766665444321 2345556666666554 678888899999988887542 2 45678899
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHH---HHHHHHHHHHHHHhChH----HHH
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR---DAAANNVKRLAEEFGPD----WAM 223 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr---~~a~~~l~~~~~~~~~~----~~~ 223 (337)
.+...++..-...--.+++.++.+.+.......-+.+...+-.++...-|+-| -+.++.+..+.+.-+.. ...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l 200 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQL 200 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhH
Confidence 98888876544455555666666666554111112222233334444444311 23333444433332221 124
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH---HHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
+.++..+-.++.++... ..+...+..+...++.+. +...++-.++..+. .+.+..++..+..++.++-..|++
T Consensus 201 ~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 201 EPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 56777777777776422 236677888887777654 44455556665554 444566666666666666555554
No 208
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.84 E-value=1.3 Score=39.55 Aligned_cols=224 Identities=14% Similarity=0.209 Sum_probs=122.1
Q ss_pred hHHHHHHhcC----CChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCcccCh-
Q 019679 31 VVPAYVRLLR----DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK- 102 (337)
Q Consensus 31 l~~~l~~~~~----d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~- 102 (337)
++..+...+. .+|+-+=+...+.+.-..+.+.+. ...+.+...+....++ +||..-....++++.+.+...+
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4444444442 234445555555555444444332 3455566666665555 5789999999999998775442
Q ss_pred --h---hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH---hhHHHHHHHHhcCCchHHH---HHHHHHh
Q 019679 103 --D---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVR---LAIIEYI 171 (337)
Q Consensus 103 --~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~llp~l~~~~~d~~~~vr---~~~~~~l 171 (337)
+ ...+.++|.+...++..-.+.--.+++-++.+.+......+. ..++|.+. ...-|.-| -+.+..+
T Consensus 107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll---~p~lWe~~gniPalvrLL 183 (435)
T PF03378_consen 107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL---SPALWERRGNIPALVRLL 183 (435)
T ss_dssp GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT---SGGGGGSTTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc---CcchhccCCCcCcHHHHH
Confidence 2 245789999999998887888888899999888875522222 33444433 33334322 2222333
Q ss_pred hHhHhhhChh----hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhc-CcchHHHH
Q 019679 172 PLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMIN-NPHYLYRM 243 (337)
Q Consensus 172 ~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~-~~~~~vR~ 243 (337)
..+.+..+.. ...+.++.++-+++.....+ ..+...+..+...++.+. +...++..+..-++ ++....+.
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~ 261 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVK 261 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 3333332222 23356777777888765433 336677788877776653 23344444444444 44566666
Q ss_pred HHHHHHHHhccccChH
Q 019679 244 TILQAISLLAPVMGSE 259 (337)
Q Consensus 244 ~~~~~l~~l~~~~~~~ 259 (337)
..+.+++.++-..|..
T Consensus 262 ~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 262 RFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHcCHH
Confidence 6666666665555544
No 209
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=1.8 Score=40.72 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=97.3
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHh--hCHHHHHHhh---hHhhHH
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRI--LNPELAIQHI---LPCVKE 76 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~--~~~~~~~~~l---l~~l~~ 76 (337)
..-..||.++-.+|+....--+....+-+...+.++++|. |..||.+++.++.-+.+. ++++.+.+++ ...+.+
T Consensus 499 ~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 499 NSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred chhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence 3456799999999988874444444556778888999997 778999999999988774 3444443332 222333
Q ss_pred hcCC-CcHHHHHHHHHHHHhcCcccChhh--HH---hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh--HHhhH
Q 019679 77 LSSD-SSQHVRSALATVIMGMAPILGKDA--TI---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSL 148 (337)
Q Consensus 77 l~~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 148 (337)
+++. ..-+.|...+..++.+....++.. .. -.++|.+.+-.+ +.+-.|.+.+..+.+++..+|.+. +.+.+
T Consensus 579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 3332 333567777777777765544332 11 233444444333 567899999999999999998643 33455
Q ss_pred HHHHHHH
Q 019679 149 LPAIVEL 155 (337)
Q Consensus 149 lp~l~~~ 155 (337)
+|.+.-.
T Consensus 658 ~pVIel~ 664 (978)
T KOG1993|consen 658 YPVIELS 664 (978)
T ss_pred HHHHHHh
Confidence 6655433
No 210
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.76 E-value=1.3 Score=39.19 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=134.1
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc-h-hhHHhhHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I-DLLSQSLLPA 151 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~-~~~~~~llp~ 151 (337)
..|++|.--..+-+.+..+......+. ....++..++.++..+++.-|......+..+..... . ..+.+.+-..
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 346777655666666666655443322 345677888999999999999999988888765442 2 2334455555
Q ss_pred HHHHhc-CCchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchH-HHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 152 IVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 152 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
+.+.+. ......-..+++.++.+...+. ++.+..-+...++.+.+.+... -......++..+.+.- +. ....+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~-l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS-LAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG-GHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch-hHHHH
Confidence 555554 3334445556677777777654 2334444555555555554432 2445555555555421 11 22334
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHh---hHHHHHHhhccCCChhHHHHHHHHHHHH--hhhhc--HHH
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS---QLLPVVINASKDRVPNIKFNVAKVLQSL--IPIVD--QSV 299 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~i--~~~~~--~~~ 299 (337)
+..+...-.-.+..-....+.-+..+...++.+.+.. .++..+..++..++..|-.+|+..+..= ...+. .+.
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~ 336 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV 336 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence 4444444444455555666667777766666554433 3555566667777777766666443221 11111 112
Q ss_pred HHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHHHh
Q 019679 300 VEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 300 ~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~~~ 333 (337)
+...+.|.|.+..+ -.+..||..|..++..+.+.
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 23444444444332 23556777777777766543
No 211
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.74 E-value=1.1 Score=38.26 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 019679 6 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60 (337)
Q Consensus 6 ~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~ 60 (337)
.-++.+.+.++...+.++.=. .+.+..-..++.|.+..||..|+..|..++..
T Consensus 39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 445666677777666665422 23345555677777777777777777777665
No 212
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.73 E-value=1.4 Score=39.11 Aligned_cols=207 Identities=11% Similarity=0.094 Sum_probs=95.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~ 75 (337)
|++|.--..+=+.+-.+......+. ....++-.+..++.++|+.-|......+-.+-...... .+.+.+-..+.
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~ 180 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY 180 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6778777777777777766554433 33467777788888888888888888777765543321 22233333333
Q ss_pred HhcCC-CcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679 76 ELSSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLP 150 (337)
Q Consensus 76 ~l~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~llp 150 (337)
+...+ ....-=..+++.++.+...+. ++.....+...++.+.+.+. ......-..++..+.+.- ..+...++.
T Consensus 181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~i~ 258 (409)
T PF01603_consen 181 RFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPVIK 258 (409)
T ss_dssp HHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHHHH
T ss_pred HHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHHHH
Confidence 33332 222333445555555554332 12222333344444444332 222333334444333321 112233444
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH---HHHHHHHHHccccchHHHHHHHHHH
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKDKVYSIRDAAANNV 210 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l 210 (337)
.+.....-.+..-....+..+..+...++++.+.. .+...+..+++.++..|-+.|+..+
T Consensus 259 ~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 259 GLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44444444444444445555555555554443322 2333333445555556655555443
No 213
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=2.5 Score=42.67 Aligned_cols=204 Identities=19% Similarity=0.147 Sum_probs=127.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHh---hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHH
Q 019679 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFD 184 (337)
Q Consensus 110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~ 184 (337)
+.++.+-+.-.++..|..|++.+..+......+.... ...-.+.+++.|.+.+||......+..+...+++. .+.
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L 122 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL 122 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555556678888888888888777655443322 23334456677888888888888888888777654 355
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH-------HHhhHHHHHHHhhc--------C-----------cc
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-------AMQHIVPQVLEMIN--------N-----------PH 238 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------~~~~l~~~l~~~~~--------~-----------~~ 238 (337)
..++|...-.-.|....|-.+|...+..... ++. ..+.+.+...+.+- | ..
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~ 199 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKY 199 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcC---hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhh
Confidence 6677777667778877877777776665432 211 11223333333311 1 22
Q ss_pred hHHHHHHHHHHHHhccccChHHHHh---------hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhH
Q 019679 239 YLYRMTILQAISLLAPVMGSEITCS---------QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRP 306 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~~~~~---------~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~ 306 (337)
.++-..++.++..+....|...-.. .--..++++++++.+.+|.+....+..+.+.+.+. ....++.|
T Consensus 200 ~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 200 QRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 4455556666666654444321111 12356889999999999999999998888776543 23456777
Q ss_pred HHHhhhCCCC
Q 019679 307 CLVELSEDPD 316 (337)
Q Consensus 307 ~l~~l~~d~~ 316 (337)
.+.....+.+
T Consensus 280 ~~~~~~~~~d 289 (1312)
T KOG0803|consen 280 VLLGSIDSLD 289 (1312)
T ss_pred HHHccccccc
Confidence 7777666665
No 214
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.66 E-value=0.63 Score=35.32 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=55.9
Q ss_pred HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH---hhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhc
Q 019679 66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIG 140 (337)
Q Consensus 66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~ 140 (337)
..+.+...+.++++++++.-|-.++..++...+..+.+... ...+..+.+.++.++ +.++..++.++..+....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566677778888888888999999888888877666543 456666777776654 5788888888888877654
No 215
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=95.63 E-value=0.38 Score=35.56 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhccccChHHHHh-hHHHHHHhhccCCChhHHHHHHHHH
Q 019679 239 YLYRMTILQAISLLAPVMGSEITCS-QLLPVVINASKDRVPNIKFNVAKVL 288 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l 288 (337)
......++.++.........+...+ .+++.+++++.++.. |.+|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 5566666666666666666544433 466666666666555 55555553
No 216
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.8 Score=39.30 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=80.4
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---HH
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD 184 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~ 184 (337)
.-++..++..+..||..|+.++..+... .+..+ ...+++.+.+++.|.+..||......+..++...+++. +.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 3445555667788999998888887776 33222 23466667777888888899988888888776665543 44
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 222 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 222 (337)
.-+.+.+...+..-.+++|..++..+..+...+++.+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 45667777777888889999999988888888876543
No 217
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.46 Score=40.71 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=84.9
Q ss_pred HHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhH
Q 019679 191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL 265 (337)
Q Consensus 191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l 265 (337)
++..++..+..||..|...+..+....... .....+++.+.+.+.|.+..+|......+..+....+++ .+..-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 445578889999999999999888764222 124467888888888999999999999888876555543 345668
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679 266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
+|++...+..-.+++|.-+...|..+...+++.
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 888888899999999999999999999888775
No 218
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=95.51 E-value=0.099 Score=35.20 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=29.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCc--chHHHHHHHHHHHHh
Q 019679 197 DKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLL 252 (337)
Q Consensus 197 d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l 252 (337)
|+.|.+|+.|++.++.++..++.. .....+...+...+.|+ +...+..|+..+..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 445566666666666666665532 13334455555555543 245555555555553
No 219
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.48 E-value=0.72 Score=35.00 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHH---hhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccCh-
Q 019679 184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS- 258 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~- 258 (337)
.+++..-+..++.++++.-|..++..+..+++..|.+.+. ...+..+...+++++ ..++..++.++..+....++
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556666777778877777888777777777765544331 234455555555443 56677777777777544332
Q ss_pred -----HH---HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 259 -----EI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 259 -----~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
+. ..+.+++.+++++++ ..+...+..+|..+...++.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 11 123455666666665 56667778888887766543
No 220
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.48 E-value=1.8 Score=38.76 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=42.0
Q ss_pred hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH---HHHHHHHHHHHcc
Q 019679 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLK 196 (337)
Q Consensus 122 ~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~ 196 (337)
-..|..++++||.+...+..+......-+.+...+++++..-|..++-.+..++.......- .+.+.+.+...|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 45566677777777766654444233333566666666666666666666666665432111 1345555555555
No 221
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.47 E-value=1.6 Score=38.07 Aligned_cols=215 Identities=18% Similarity=0.154 Sum_probs=120.4
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccCh-hhHHhhhHHHH--HHhhcC-CChhHHHHHHHhHHHhHhhh-chhhHHhhHHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGK-DATIEQLLPIF--LSLLKD-EFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPA 151 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l--~~~l~d-~~~~vr~~a~~~l~~l~~~~-~~~~~~~~llp~ 151 (337)
++.|+ ..||.++.+.+..+...... ....+.=++.+ ..+-+| ++..-|..|++-+..+.+.- |.+.+...+...
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 44555 88888888888766542211 01111111222 223333 34567889999988888763 345566678888
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh------HHHHhh
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP------DWAMQH 225 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~ 225 (337)
+....++++.+.|..+++.+..++-.-+.-.....-+..+.+.+.|+..++-+..+.++-.+.+.-.. ....+.
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLES 192 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence 88888999999999999998887654322212222345566666666666666666666665543211 112344
Q ss_pred HHHHHHHh----hcCcc-hHHHHHHHHHHHHhcc-ccChHHH--H-hhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 226 IVPQVLEM----INNPH-YLYRMTILQAISLLAP-VMGSEIT--C-SQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 226 l~~~l~~~----~~~~~-~~vR~~~~~~l~~l~~-~~~~~~~--~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
++..+.+. .++.. ...-.++..++..+-. +-|--.+ . -.-+..+...+.-+.+++|......+-.+.
T Consensus 193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 55555555 22222 1122233444444432 2221111 0 134556667777788888888877766554
No 222
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.44 E-value=0.32 Score=36.60 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc---ChHHH-HhhHHHHHHhh
Q 019679 197 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSEIT-CSQLLPVVINA 272 (337)
Q Consensus 197 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---~~~~~-~~~l~~~l~~~ 272 (337)
...+++|..+.-.+.++.+.. ++...+.+...+...+.+....-...++.++..+-+.. +...| .+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 456788999988888887544 34455566666767776555445555666666654432 22222 34567777777
Q ss_pred cc--CCChhHHHHHHHHHHHHhhhhcH-HHHHHhhhHHHHhhhC-CCCcc-HHHHHHHHHH
Q 019679 273 SK--DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSE-DPDVD-VRFFATQALQ 328 (337)
Q Consensus 273 l~--d~~~~vr~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-vr~~a~~al~ 328 (337)
.. .++..+..+++++|..-+..-.. ..+..+..+.|..+.+ +++.. +|..|.-+|-
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 76 66778888888888877643332 2456789999999874 44454 6766665543
No 223
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.43 E-value=1.3 Score=36.99 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---H-----HhhHHHHHHHhhc--------CcchHHHHHH
Q 019679 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-----MQHIVPQVLEMIN--------NPHYLYRMTI 245 (337)
Q Consensus 182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~-----~~~l~~~l~~~~~--------~~~~~vR~~~ 245 (337)
.+.+-++|.++.++.|.++.+|..++..+..+........ . .+.+.+.+..++. +++..+-..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 3556799999999999999999999999999998775443 2 2234445555554 4556666777
Q ss_pred HHHHHHhcccc---Ch----HHHHhhHHHHHHhh-ccC---CChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhh
Q 019679 246 LQAISLLAPVM---GS----EITCSQLLPVVINA-SKD---RVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS 312 (337)
Q Consensus 246 ~~~l~~l~~~~---~~----~~~~~~l~~~l~~~-l~d---~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~ 312 (337)
..++-.+.... +. ..+...+...++.. ... +++.++...++.+..+...+|.. .+...++|.+.+.+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 77777774421 11 11222233322222 222 34889999999999999998876 45677888888877
Q ss_pred CCCC
Q 019679 313 EDPD 316 (337)
Q Consensus 313 ~d~~ 316 (337)
.++.
T Consensus 275 ~npf 278 (282)
T PF10521_consen 275 ENPF 278 (282)
T ss_pred cCCC
Confidence 7654
No 224
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.42 E-value=1 Score=35.73 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc-cchHHHHHHH-HHHHHHHHHhChHHHHhh
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAA-NNVKRLAEEFGPDWAMQH 225 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~-~~l~~~~~~~~~~~~~~~ 225 (337)
.......+..+.....|..++..+........ ...++.+..++.+ ++|.+-...+ ..++.+.... +.
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~ 120 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PE 120 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GG
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HH
Confidence 33444555666666666666665554333222 2234455555544 5566666553 3344433211 45
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
..+.+....++++..+|.+++.++...... ...+.++..+...+.|+...||.+...+|..++...+
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 677777888887755555554443332222 3445777778888888888888888888888877543
No 225
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.39 E-value=1.1 Score=35.67 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=14.9
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679 186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEE 216 (337)
Q Consensus 186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 216 (337)
.++..+...+.|++..||.+..-.|..++..
T Consensus 155 ~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 155 ELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555555555555444
No 226
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=3.1 Score=40.06 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--H---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh-
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--W---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS- 258 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~- 258 (337)
.+++.....+|++++-.+|-.++..+......+... . ..+...|.+++.+.+.++-+-..|+.++..++...|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 345666678899999999999999888766655321 1 2456778889999999988888999999999877763
Q ss_pred --HHHHhhHHHHHHhhccCCC
Q 019679 259 --EITCSQLLPVVINASKDRV 277 (337)
Q Consensus 259 --~~~~~~l~~~l~~~l~d~~ 277 (337)
.-+...++|-+-.++.|..
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888877776654
No 227
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.17 E-value=1.8 Score=36.88 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=77.3
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhc----CCchHHHHHHHHHhhHhHhhhC--h
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLG--V 180 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~--~ 180 (337)
....+.+++..++..+...++..+..+...-+.... .+.+++.+.+.+. .++...+..++.++..+...-. .
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 445556677777888888888888888766443221 1244454444443 3444556777777777764432 1
Q ss_pred hhHHHHHHHHHHHHc-----c--ccchHHHHHHHHHHHHHHHHhChHH----HHhhHHHHHHHhhcCcc-hHHHHHHHHH
Q 019679 181 GFFDDKLGALCMQWL-----K--DKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPH-YLYRMTILQA 248 (337)
Q Consensus 181 ~~~~~~l~~~l~~~l-----~--d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~~~~-~~vR~~~~~~ 248 (337)
..+....++.+...+ . ....++.+.++-++..++ |.++. ....++|.+.+.+++.. -.+=.-++.+
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 223355666666666 2 234567777777777664 33322 22347788887776532 2222234555
Q ss_pred HHHhccccC
Q 019679 249 ISLLAPVMG 257 (337)
Q Consensus 249 l~~l~~~~~ 257 (337)
+..+.....
T Consensus 264 l~Nl~~~~~ 272 (312)
T PF03224_consen 264 LRNLLSKAP 272 (312)
T ss_dssp HHHTTSSSS
T ss_pred HHHHHhccH
Confidence 555554433
No 228
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=2.8 Score=38.68 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=128.4
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc--HHHHHHHHHHHHhcCcccChhhHHh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATIE 107 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~ 107 (337)
..+..+...+++++..+|.+++..|+..-.....+++...+.| ...|.+ ..|--.+.-++|.+.----+++...
T Consensus 452 palALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~P----i~~d~~~~~ev~~~aslsLG~IfvGscn~dvts 527 (878)
T KOG2005|consen 452 PALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSP----IMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTS 527 (878)
T ss_pred HHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhH----HhcCCCCchhHHHHHHhhcceeEEecCChHHHH
Confidence 4666777777778888888888877765554444444333333 334433 3455555555555432111222333
Q ss_pred hhHHHHHHhhc--CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--H
Q 019679 108 QLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--F 183 (337)
Q Consensus 108 ~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~ 183 (337)
.++..+.+--+ -.+...|-.++ +++.+ ..|.....+.+...+..+ ....|.. ++.+...+...|... .
T Consensus 528 ~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkqe~~d~~~e~~~~i----~~~~~~~-~~~lv~~caYaGTGnvl~ 599 (878)
T KOG2005|consen 528 SILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQESVDAVVETIKAI----EGPIRKH-ESILVKSCAYAGTGNVLK 599 (878)
T ss_pred HHHHHHHHhhhhhhhchHHHHHHH-HHHHH--HhcccchHHHHHHHHHHh----hhHHHHH-HHHHHHHhhccccCceEE
Confidence 44444433222 12233443222 11111 223222212222222211 1112222 122223333333221 1
Q ss_pred HHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH
Q 019679 184 DDKLGALCMQWLKDKVY---SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 260 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~ 260 (337)
.+. ..+.....+... .-.+-|+-.++.+ ..|.+.-.+-.+.++-.++.-.++++|.+.-.+++.++..-.
T Consensus 600 Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAli--AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNP--- 672 (878)
T KOG2005|consen 600 IQS--QLLLSFCGEHDADLESEQELAVLGIALI--AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP--- 672 (878)
T ss_pred ech--hhhhhhcCCCccchhhhccchhhhhhhh--hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC---
Confidence 111 112222332211 1111222222222 233333334456666666666778899998888888764332
Q ss_pred HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh-hhCCCC
Q 019679 261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPD 316 (337)
Q Consensus 261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~d~~ 316 (337)
.-.+++.+.++.+|.+.+|-.+++-+++-++..-.+..+ ..++..+.. ..+|++
T Consensus 673 -q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl-a~mLrqlaSYyyKd~~ 727 (878)
T KOG2005|consen 673 -QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL-AQMLRQLASYYYKDSK 727 (878)
T ss_pred -cchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH-HHHHHHHHHHHhccch
Confidence 236889999999999999999999999988764443332 233333333 344544
No 229
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.01 E-value=7.3 Score=43.19 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=159.0
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh----C-HH-----HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 99 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~----~-~~-----~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 99 (337)
-+++.+.+.+..++.+++..+..++..+.+.. + ++ .+..++++.+.+++-|+.|.-|...+..++.+...
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 37899999999999999999999988776542 1 11 34577888888999999999999999999888876
Q ss_pred cChhhHH---hhhHHHHHHhhcCCChhHHH----HHHHhHHHhHhh----hchh----hHHhhHHHHHHHHhcCCchHHH
Q 019679 100 LGKDATI---EQLLPIFLSLLKDEFPDVRL----NIISKLDQVNQV----IGID----LLSQSLLPAIVELAEDRHWRVR 164 (337)
Q Consensus 100 ~~~~~~~---~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~----~~~~----~~~~~llp~l~~~~~d~~~~vr 164 (337)
.+..-.. ..++..+...+.|...++.. .+-..+-.+... +..+ .....++-.+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 6632221 34455555556665443333 222222222222 1111 1123344455555678888999
Q ss_pred HHHHHHhhHhHhhhChhhHHHHHHHHHHHHc---------cccchHHHHHHHHHHHHHHHHhChHHH--Hhh------HH
Q 019679 165 LAIIEYIPLLASQLGVGFFDDKLGALCMQWL---------KDKVYSIRDAAANNVKRLAEEFGPDWA--MQH------IV 227 (337)
Q Consensus 165 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---------~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~------l~ 227 (337)
..+...+..+++..|.+. .+++..+.+.+ ..-...+.-..+.++.. +-..+++.+ ... ..
T Consensus 1144 ~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f-C~~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF-CLSLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH-HHHcCCcccCchHHHHHHHHHH
Confidence 999999999998886543 22222222222 22222222222222111 112222211 000 11
Q ss_pred HHHHHhhc---------------CcchHHHHHHHHHHHHhccccC-----hHHHHhhHHHHHHhhccCCChhHHHHHHHH
Q 019679 228 PQVLEMIN---------------NPHYLYRMTILQAISLLAPVMG-----SEITCSQLLPVVINASKDRVPNIKFNVAKV 287 (337)
Q Consensus 228 ~~l~~~~~---------------~~~~~vR~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 287 (337)
..+..... ...-+.|.+++..+........ -..+...++..+++.+.-+.+++...+..+
T Consensus 1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111000 0123467888777776543322 123567888888888888888988888887
Q ss_pred HHHHhh---hhcHHHHHHhhhHHHHhh
Q 019679 288 LQSLIP---IVDQSVVEKSIRPCLVEL 311 (337)
Q Consensus 288 l~~i~~---~~~~~~~~~~i~~~l~~l 311 (337)
+..+.. .++.+.......|.|.++
T Consensus 1301 l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHhhhhccccccHHHHHhhHHHHHHhh
Confidence 777643 244444444444555544
No 230
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.96 E-value=0.084 Score=37.10 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=46.6
Q ss_pred hhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccChhh--H-HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679 70 ILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA--T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 70 ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 137 (337)
++..|.+++ ...++.+-..||.-+|.++...+... . .-.....+.+++.+++++||..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555 33466777888888888887665322 1 13466788889999999999999999887754
No 231
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=2 Score=43.47 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=97.6
Q ss_pred HHhhhHhhHHh-cCCCcHHHHHHHHHHHHhcC--cccC-hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh
Q 019679 67 IQHILPCVKEL-SSDSSQHVRSALATVIMGMA--PILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 142 (337)
Q Consensus 67 ~~~ll~~l~~l-~~d~~~~vr~~a~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 142 (337)
...++..+..+ ..+.+|++|.+.++-+..+. ..++ .+...+++-..+.+++.|.+-+||+.|+.++..+.+.-...
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 34455555544 45578899999888876643 3344 45556889999999999999999999999999988753322
Q ss_pred hHHhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679 143 LLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 143 ~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 217 (337)
...+..-+..... ....+..-.++++..++.++-.++- ..+.++.+..+....+++ ..+++++-+++..+-...
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 2211111111111 2334455678888888888776643 234455555555555555 778888888888876655
No 232
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.91 E-value=2.4 Score=37.08 Aligned_cols=208 Identities=16% Similarity=0.121 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHHhcCc------ccChhhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhh----HHhhHH
Q 019679 82 SQHVRSALATVIMGMAP------ILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL----LSQSLL 149 (337)
Q Consensus 82 ~~~vr~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~----~~~~ll 149 (337)
+.++-..|+++++.+.. .++.+ ....++...+..+.+++ ..+....+..+.. +.+++.. ....++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d-~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDD-FASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence 55677788888887653 33322 22345566666665543 2444444444332 1222221 223344
Q ss_pred HHHHHHhc-CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH----
Q 019679 150 PAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---- 222 (337)
Q Consensus 150 p~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---- 222 (337)
..+..+-+ =++..+-...+..+..+....+... ..+.-+|.++..+-+....+|..|..........+|++..
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 44443332 2333444555555555555543322 2344667777777788888999887777777666665321
Q ss_pred --------------HhhHHHHHHHhhcC-cchHHHHHHHHHHHHh----ccc-cChHHHHhhHHHHHHhhccCCChhHHH
Q 019679 223 --------------MQHIVPQVLEMINN-PHYLYRMTILQAISLL----APV-MGSEITCSQLLPVVINASKDRVPNIKF 282 (337)
Q Consensus 223 --------------~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l----~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~ 282 (337)
.+.+.+.+.+++.+ .+... +...-+.+ ... +..-.+.+..+.....+++++++.+|.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~---a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~ 292 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKL---AMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI 292 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCcCCcch---HHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH
Confidence 12233334455544 22111 11111111 111 222334566777777778888888888
Q ss_pred HHHHHHHHHhhhh
Q 019679 283 NVAKVLQSLIPIV 295 (337)
Q Consensus 283 ~a~~~l~~i~~~~ 295 (337)
.|..+...+....
T Consensus 293 ~A~~aW~~liy~~ 305 (372)
T PF12231_consen 293 QAFKAWRRLIYAS 305 (372)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888876633
No 233
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=5.1 Score=40.68 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=133.9
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH---HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhh
Q 019679 35 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQL 109 (337)
Q Consensus 35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 109 (337)
+.+-+.-.|+..|..|+..+..+.+....+... .+....+.++..|.+..||......+..+...+++.. ....+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 334444568888999999888888766555332 2334456778999999999999999998887776543 34677
Q ss_pred HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH
Q 019679 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 185 (337)
Q Consensus 110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 185 (337)
+|.+.-...|.+..|-.+|..++......-.... ..+.+.+...+.+- ..++... +
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~-------------------~~~~~sl-S 185 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILV-------------------KETPDSL-S 185 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHh-------------------ccCcccc-c
Confidence 8888888888888888887777765544100000 01112222222110 0011100 0
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHH-------h--hHHHHHHHhhcCcchHHHHHHHHHHHHhcccc
Q 019679 186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-------Q--HIVPQVLEMINNPHYLYRMTILQAISLLAPVM 256 (337)
Q Consensus 186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-------~--~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~ 256 (337)
...-.-.+-++.....|...++.++..+....|.+.-. . .-...++.+++++++.+|.+....+-.+....
T Consensus 186 d~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 186 DLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred hhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhh
Confidence 00000001122223344455555555555433332100 1 12346778888888889988888888776554
Q ss_pred ChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 257 GSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 257 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
..- ...+++.|.+.....+.+ .|......++....+.+.
T Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p 307 (1312)
T KOG0803|consen 266 LNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLP 307 (1312)
T ss_pred HHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhh
Confidence 322 224466677766666655 444444444333333333
No 234
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.78 E-value=1.4 Score=36.33 Aligned_cols=131 Identities=17% Similarity=0.184 Sum_probs=81.3
Q ss_pred HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc------chHHHHHHHHHHHHhccc--cChHHHHhhH
Q 019679 194 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP------HYLYRMTILQAISLLAPV--MGSEITCSQL 265 (337)
Q Consensus 194 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~vR~~~~~~l~~l~~~--~~~~~~~~~l 265 (337)
++...+.+.|.+|+.++.. +.-.++++|.+..+++++ +-.+-.+.+....++... +=.+++...+
T Consensus 206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 3555677889999888753 333567888888888763 233444455555555332 2245567788
Q ss_pred HHHHHhhc------cCC----ChhHHHHHHHHHHHHhhhhcHHHH--HHhhhHHHHhhhCC--CCccHHHHHHHHHHHHH
Q 019679 266 LPVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQSVV--EKSIRPCLVELSED--PDVDVRFFATQALQSKD 331 (337)
Q Consensus 266 ~~~l~~~l------~d~----~~~vr~~a~~~l~~i~~~~~~~~~--~~~i~~~l~~l~~d--~~~~vr~~a~~al~~l~ 331 (337)
+|.++.++ +++ ...+|.-|+..++.+.+.+++.+. ...+...+.+..-| +.....+.|.++++.+.
T Consensus 279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 88877665 222 235999999999999998887642 22333333332222 34456777777776654
No 235
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.71 E-value=0.23 Score=38.58 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=55.7
Q ss_pred HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc-cChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV-MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
+.+..++.+.++..+++..+|..|+..+..+... +-. -...+|.+..+..|+++.+|..|.+.+..+.+..++
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn---P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN---PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC---hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 3566778888888888888999998888887542 111 135788888888999999999998888888776643
No 236
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=94.68 E-value=3.5 Score=37.90 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=95.9
Q ss_pred hhCHHHHHHhhhHhhHHhcCCCcH--HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh---h-----cCCChhHHHHHH
Q 019679 60 ILNPELAIQHILPCVKELSSDSSQ--HVRSALATVIMGMAPILGKDATIEQLLPIFLSL---L-----KDEFPDVRLNII 129 (337)
Q Consensus 60 ~~~~~~~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l-----~d~~~~vr~~a~ 129 (337)
++...+...+++..+...+.++.| .--...|+++|.++....++...+.++.++..+ + +|....|-...+
T Consensus 472 hL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIM 551 (1053)
T COG5101 472 HLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIM 551 (1053)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence 344445556677777777777766 455678999999998777655444444444333 3 232222322222
Q ss_pred HhHHHhHhhhch-hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh----------hhHHHHHHHHHHHHcccc
Q 019679 130 SKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------GFFDDKLGALCMQWLKDK 198 (337)
Q Consensus 130 ~~l~~l~~~~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~ 198 (337)
-.+|+.-..... -.+.+.+...+.++..+.+..++..++..+..+++.+.. +.+...++.-+.....|-
T Consensus 552 yvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL 631 (1053)
T COG5101 552 YVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDL 631 (1053)
T ss_pred eeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccC
Confidence 222322222211 123456666677777788899999999999999988743 345556666666666776
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 019679 199 VYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 199 ~~~vr~~a~~~l~~~~~~~ 217 (337)
.+.-...-..+.+.+....
T Consensus 632 ~pqQ~htfYeAcg~vIse~ 650 (1053)
T COG5101 632 EPQQKHTFYEACGMVISEV 650 (1053)
T ss_pred ChHHHhHHHHHHhHHHhcc
Confidence 6666666666666665543
No 237
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=94.67 E-value=0.044 Score=28.00 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 019679 5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 42 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~ 42 (337)
|.||+.++.+|+.+. .++.++.+.+.++|+
T Consensus 1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLG--------DEEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcCC
Confidence 689999999999874 245677777777663
No 238
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=94.67 E-value=0.042 Score=30.76 Aligned_cols=25 Identities=44% Similarity=0.466 Sum_probs=14.8
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGK 53 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~ 53 (337)
+.+...+.+.+.|+++.||+++++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4555666666666666666666543
No 239
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.60 E-value=2.8 Score=36.51 Aligned_cols=229 Identities=14% Similarity=0.110 Sum_probs=135.6
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-HHHHHhhhH-hh-HHhcCC-CcHHHHHHHHHHHHhcCccc
Q 019679 25 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQHILP-CV-KELSSD-SSQHVRSALATVIMGMAPIL 100 (337)
Q Consensus 25 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~ll~-~l-~~l~~d-~~~~vr~~a~~~l~~l~~~~ 100 (337)
+..+....+.+...+-+++.+||.++...+..+...... ..+.+.=++ ++ ..+..| ++..=|..|++.+..+.+.-
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 444556666666555555699999999999877654222 122222122 22 223344 45567889999999888763
Q ss_pred -ChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC
Q 019679 101 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 179 (337)
Q Consensus 101 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 179 (337)
|.+.....++..+....+++++..|..|+..+..++-.-+.-.....-+..+.+.+.|.....-..++..+-.+.....
T Consensus 100 ~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 100 KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 3333456788889999999999999999999988765432211122233444444444444455555555544443321
Q ss_pred h------hhHHHHHHHHHHHH----ccccch-HHHHHHHHHHHHHHHHhChHHH---H-hhHHHHHHHhhcCcchHHHHH
Q 019679 180 V------GFFDDKLGALCMQW----LKDKVY-SIRDAAANNVKRLAEEFGPDWA---M-QHIVPQVLEMINNPHYLYRMT 244 (337)
Q Consensus 180 ~------~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~~~~~~~~~~~---~-~~l~~~l~~~~~~~~~~vR~~ 244 (337)
. ..-.+.++..+... .++... +--+.+..++..+.+.+.+=.. . -.-+..+++.+.-++..+|..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 1 11123333333333 222221 3556667778888777643110 1 145666777888889899999
Q ss_pred HHHHHHHhc
Q 019679 245 ILQAISLLA 253 (337)
Q Consensus 245 ~~~~l~~l~ 253 (337)
.+..+-.+-
T Consensus 260 Ildll~dll 268 (371)
T PF14664_consen 260 ILDLLFDLL 268 (371)
T ss_pred HHHHHHHHH
Confidence 888887764
No 240
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.57 E-value=0.85 Score=33.65 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=41.5
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC-CChhHHHHHHHHHHHHhhhhcH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
...+..|..-+++++.++-..|+..+..+++.+|..+. ...++..+.+++.+ .+..||..+...+..++..+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 34555555555666666666666666666666665432 22455555555555 4556666666666665555443
No 241
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=94.53 E-value=0.045 Score=30.61 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=13.8
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHH
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIIS 130 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~ 130 (337)
..+...+...+.|+++.||.+|+.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 345555555566666666666554
No 242
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=3.5 Score=37.15 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=128.2
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH-HHHHHHHHHHHhcC-cccChhhHH
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMA-PILGKDATI 106 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~-~~~~~~~~~ 106 (337)
+..+..+.+.++.++...+.+++-.++........+++...+.|. ..++..| .+-..+.-+++.+. ..+..+ ..
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi---~~std~pie~~~~asltLg~vFvGtcngD-~t 524 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPI---MFSTDSPIEVVFFASLTLGSVFVGTCNGD-LT 524 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhh---hcCCCCcHHHHHHHHHhhhheEeeccCch-HH
Confidence 456777888888888888888888888776665555555544444 2233333 44444444455432 223222 23
Q ss_pred hhhHHHHHHhhc--CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679 107 EQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-- 182 (337)
Q Consensus 107 ~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 182 (337)
..+++-+.+--+ .+...+|-.++ +++.+ ..|.....+.+...+...-. .-.| ..+.+...++..|...
T Consensus 525 s~ilqtf~Er~~~e~~tqw~RFlaL-gLa~L--f~g~~d~~d~v~eti~aIeg---~ls~--~~eiLv~~c~Y~GTGdvl 596 (881)
T COG5110 525 SLILQTFVERGKIESETQWFRFLAL-GLASL--FYGRKDQVDDVEETIMAIEG---ALSK--HEEILVKGCQYVGTGDVL 596 (881)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHH-HHHHH--HccccchhHHHHHHHHHhcc---hhhh--hHHHHHhhceecccCcHH
Confidence 344444444322 22233443322 22222 23333322333333332211 0011 1233444444444332
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHH---HHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 259 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~ 259 (337)
+.+.++-+.-+.-.|+- .--++.+..++.+ ....|.+.-.+-++.++...+--.+.++|...-.+.+.+...-.
T Consensus 597 ~Iq~lLhv~~e~~~D~~-k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP-- 673 (881)
T COG5110 597 VIQSLLHVKDEFTGDTL-KNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP-- 673 (881)
T ss_pred HHHHHHhccCCCCcccc-hhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc--
Confidence 22222221111112220 0012223333322 22345554455566777777766778899888777777654322
Q ss_pred HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh
Q 019679 260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 295 (337)
Q Consensus 260 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 295 (337)
.-.+++.+.+..+|...+|-.+++-+++-++..-
T Consensus 674 --Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT 707 (881)
T COG5110 674 --QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGT 707 (881)
T ss_pred --chHHHHHHHHhccccchhHHHHHHHHhhccccCc
Confidence 2368899999999999999999999988886543
No 243
>PF05536 Neurochondrin: Neurochondrin
Probab=94.47 E-value=4 Score=37.67 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=145.3
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-----HHHh-hhHhhHHhcCC-------CcHHHHHHHHHHHHhc
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-----AIQH-ILPCVKELSSD-------SSQHVRSALATVIMGM 96 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-----~~~~-ll~~l~~l~~d-------~~~~vr~~a~~~l~~l 96 (337)
..+.....++...+++-|-+++..+.++++.-+... +.+. -.+++..++.. +....+..++..+..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345666677777777788888888888877533221 1111 12344444433 3346677778888888
Q ss_pred Ccc--cChhhHHhhhHHHHHHhhcCCCh-hHHHHHHHhHHHhHhhh-chhhH-HhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679 97 API--LGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELAEDRHWRVRLAIIEYI 171 (337)
Q Consensus 97 ~~~--~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~llp~l~~~~~d~~~~vr~~~~~~l 171 (337)
+.. ...+...-.-+|.+.+.+...+. ++...++++|..++..- |.+.+ ....+|.+.+...+ +......++..+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 761 11112234678999999988777 99999999999988542 23333 33466677776655 566778888888
Q ss_pred hHhHhhhChhhH------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--------HHHHhhHHHHHHHhhcCc
Q 019679 172 PLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--------DWAMQHIVPQVLEMINNP 237 (337)
Q Consensus 172 ~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~~~~~~ 237 (337)
..+....+.+.+ ...+++.+..........-+-..+..++.+....+. ......+..-+..++.++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 877776663322 224555555555555556677777777777655421 112345666777777654
Q ss_pred -chHHHHHHHHHHHHhccccChH
Q 019679 238 -HYLYRMTILQAISLLAPVMGSE 259 (337)
Q Consensus 238 -~~~vR~~~~~~l~~l~~~~~~~ 259 (337)
....|..++.....+.+.+|.+
T Consensus 244 ~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHhChH
Confidence 4788999998888887777754
No 244
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.40 E-value=0.77 Score=31.93 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=50.7
Q ss_pred HHHHHHHhhcC----cchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679 226 IVPQVLEMINN----PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 299 (337)
Q Consensus 226 l~~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~ 299 (337)
++..+.+.+.| .+...|..++.+++.+.+..++. .+.++++-.+...+..+ ++|..+++++..+.+.++.+.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 44455555555 45778888888898888833322 34556666666666665 899999999999999888764
Q ss_pred H
Q 019679 300 V 300 (337)
Q Consensus 300 ~ 300 (337)
.
T Consensus 90 l 90 (107)
T PF08064_consen 90 L 90 (107)
T ss_pred H
Confidence 4
No 245
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.39 E-value=1.5 Score=36.13 Aligned_cols=138 Identities=14% Similarity=0.258 Sum_probs=76.8
Q ss_pred hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC------hhHHHHHHHhHHHhHhhh--ch
Q 019679 70 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF------PDVRLNIISKLDQVNQVI--GI 141 (337)
Q Consensus 70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~~--~~ 141 (337)
+-..+..++...+...|.+|+.++.+=.. ..+++|.+..++.++- -++-...+.-...+.+.- --
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~dsG-------lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFv 271 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRNDSG-------LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFV 271 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcc-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceee
Confidence 33344556677888999999998765332 4678899988886631 111111111111222111 12
Q ss_pred hhHHhhHHHHHHHHh------c----CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHcccc--chHHHHHHH
Q 019679 142 DLLSQSLLPAIVELA------E----DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDK--VYSIRDAAA 207 (337)
Q Consensus 142 ~~~~~~llp~l~~~~------~----d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~ 207 (337)
+.....++|.+..++ + ++...+|..++..+..+...++... ..+.+...+++..-|. ...-...|+
T Consensus 272 dPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGal 351 (450)
T COG5095 272 DPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGAL 351 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhh
Confidence 344566777665442 1 2344688888888888888776543 2344444444443332 335566677
Q ss_pred HHHHHHH
Q 019679 208 NNVKRLA 214 (337)
Q Consensus 208 ~~l~~~~ 214 (337)
.++..+.
T Consensus 352 kgls~l~ 358 (450)
T COG5095 352 KGLSILS 358 (450)
T ss_pred hhhhhhc
Confidence 6666544
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.36 E-value=1.9 Score=33.51 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=57.0
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 101 (337)
..++.+.+.+.+++..+|..|++.+..+...- -......+|.+..+..|+++.+|..|...+..+.+..+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45777888889999999999999998887631 11224678999999999999999999999999887655
No 247
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=4.9 Score=40.93 Aligned_cols=151 Identities=14% Similarity=0.176 Sum_probs=95.8
Q ss_pred hhHHHHHHHH-hcCCchHHHHHHHHHhhHhH--hhhC-hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH
Q 019679 146 QSLLPAIVEL-AEDRHWRVRLAIIEYIPLLA--SQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 221 (337)
Q Consensus 146 ~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 221 (337)
+.++..+..+ ..+.+|++|.+++..+.... ..++ .+...+++-..+..++.|...+||+.|+.++.-+.+.-..+.
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 5566666643 45678999999988877654 2333 344556788889999999999999999999998876432222
Q ss_pred HHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccC--hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 222 AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMG--SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
..+..-+........ .+...+-+++..+++++-.+. -..+.++.+..+.....++ ..++.++-+++..+......
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence 111112222222222 234455567777777765443 2224555555555655666 78899999998888665543
No 248
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=4.9 Score=37.92 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=43.9
Q ss_pred cchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCc
Q 019679 29 SDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAP 98 (337)
Q Consensus 29 ~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~ 98 (337)
.+.+|.+.....+ .-.+-|+.|+.+|-.+++.....-..+-+-|++.-+-.| .++..-..++..+..+..
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 3455555555543 336679999999999988766554444455555555555 355666677776665543
No 249
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=94.26 E-value=2.1 Score=33.57 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=21.2
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
..+...+.+.+.|. +++|...+++|..+
T Consensus 170 ~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 170 PSFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 56677777777776 78888888888765
No 250
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.20 E-value=0.21 Score=35.14 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHH-HHH--HhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679 30 DVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPE-LAI--QHILPCVKELSSDSSQHVRSALATVIMGMA 97 (337)
Q Consensus 30 ~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~-~~~--~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 97 (337)
+++..+.+++ .+.++.+-.-|+.-++.++...+.. .+. -..-..+.++++++++.||..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5888888998 4457888888889999999887553 222 124456778999999999999999987754
No 251
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.11 E-value=0.75 Score=34.57 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hh-HHhhhHHHHHHh
Q 019679 41 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DA-TIEQLLPIFLSL 116 (337)
Q Consensus 41 d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~l~~~l~~~ 116 (337)
...+++|..+.-++.++.+ ..++.+.+.+-.++..++.+....-...++.++..+-...++ .. ..+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 3567788888888887752 233345556666666666655444555555656555543332 11 124566666666
Q ss_pred hc--CCChhHHHHHHHhHHHhHhhhc-hhhHHhhHHHHHHHHh
Q 019679 117 LK--DEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELA 156 (337)
Q Consensus 117 l~--d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~llp~l~~~~ 156 (337)
+. .++..+...+++.+..-+..-. ...+.+...+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 66 5556666666666654432211 1223344555555555
No 252
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.10 E-value=3.7 Score=35.89 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhHHHHHH------hhCHHHHHHhhhHhhHHhcCCC-cH-HHHHHHHHHHHhcCcccChhhH----HhhhH
Q 019679 43 EAEVRIAAAGKVTKICR------ILNPELAIQHILPCVKELSSDS-SQ-HVRSALATVIMGMAPILGKDAT----IEQLL 110 (337)
Q Consensus 43 ~~~vR~~a~~~l~~~~~------~~~~~~~~~~ll~~l~~l~~d~-~~-~vr~~a~~~l~~l~~~~~~~~~----~~~l~ 110 (337)
+.++-..|+..++.+.- .++.+... .++......++++ .+ .+-...+.++.. +.++.... ...++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~-~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFAS-FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence 56778888888877653 34444322 2333333333333 22 344444444432 22222221 22233
Q ss_pred HHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH---
Q 019679 111 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--- 184 (337)
Q Consensus 111 ~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--- 184 (337)
..+..+-+ =++..+-...+..+..+....+.... ...-+|.+....-+....+|..+......+...++++...
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 33333322 23456667777777777766543221 2335566655555566667777766666666555543322
Q ss_pred ---------------HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC-----hHHHHhhHHHHHHHhhcCcchHHHHH
Q 019679 185 ---------------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-----PDWAMQHIVPQVLEMINNPHYLYRMT 244 (337)
Q Consensus 185 ---------------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~vR~~ 244 (337)
+.+.+.+.+++.++... ..+...-+.+...+| ...+....+.....++++++..+|..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHH
Confidence 22223333344431110 011111111112222 12234567777778888899999999
Q ss_pred HHHHHHHhccccCh
Q 019679 245 ILQAISLLAPVMGS 258 (337)
Q Consensus 245 ~~~~l~~l~~~~~~ 258 (337)
|..+-..+......
T Consensus 294 A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 294 AFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHHHHHhcC
Confidence 99998888764443
No 253
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.06 E-value=0.1 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=13.6
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
.+|.|.+++.+++..||..++.+|+.+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445555555555555555555555444
No 254
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.89 E-value=0.22 Score=27.56 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=17.3
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVN 136 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 136 (337)
..+|.+.+++.+.++++++.|+.++..++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45566666666666666666666665543
No 255
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.67 E-value=4.1 Score=34.89 Aligned_cols=211 Identities=12% Similarity=0.162 Sum_probs=124.4
Q ss_pred hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chh------hH--H-hhHHHHHHHHhcCCchHHHHHHHHHhh
Q 019679 103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID------LL--S-QSLLPAIVELAEDRHWRVRLAIIEYIP 172 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~------~~--~-~~llp~l~~~~~d~~~~vr~~~~~~l~ 172 (337)
+.....+++.+...+..=+.+.|+.+...+..+...- +.. .+ . +.++..+...-++++...-.+. .+.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~--mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGD--MLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHH--HHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHH--HHH
Confidence 3344677788888888888889998888888776552 211 11 1 3455555555555443221111 111
Q ss_pred HhHhh--hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHH---HhhHHHHHHHhhcCcchHHHHH
Q 019679 173 LLASQ--LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMT 244 (337)
Q Consensus 173 ~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~---~~~l~~~l~~~~~~~~~~vR~~ 244 (337)
..++. +......+..+--+++....++-+|-..|..++..+..... .+.+ .+.++..+..++.++++-.|..
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 11100 00000011122235577788888999999888888765431 1111 3457778888999999999999
Q ss_pred HHHHHHHhccccC-hHH-----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-H-------HHHHhhhHHHHh
Q 019679 245 ILQAISLLAPVMG-SEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------VVEKSIRPCLVE 310 (337)
Q Consensus 245 ~~~~l~~l~~~~~-~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-~-------~~~~~i~~~l~~ 310 (337)
++..++.+...-. ... -.+.-+-.+..+|.|++..+|..|...+.-+...-.. + ...++++..|..
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999852211 111 1234677889999999999999999999988754221 1 113567777777
Q ss_pred hhCCC
Q 019679 311 LSEDP 315 (337)
Q Consensus 311 l~~d~ 315 (337)
+..|+
T Consensus 309 f~~~~ 313 (335)
T PF08569_consen 309 FHTDR 313 (335)
T ss_dssp TTTT-
T ss_pred CCCCC
Confidence 77776
No 256
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=7.1 Score=37.40 Aligned_cols=172 Identities=12% Similarity=0.150 Sum_probs=114.5
Q ss_pred HHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc-----HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-
Q 019679 45 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK- 118 (337)
Q Consensus 45 ~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~- 118 (337)
..|+..-.++...-+.++ +...+.+...+.+++.|.+ |..-++++..+-.+++..|... ...+|.+.+.+-
T Consensus 439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~as 515 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccc
Confidence 466666666666655555 3334556666777776655 7778888999999999888643 345666666542
Q ss_pred ----CCChhHHHHHHHhHHHhHhhhchhh-HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHH
Q 019679 119 ----DEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALC 191 (337)
Q Consensus 119 ----d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l 191 (337)
..++..-..+...++.++...+... ..+..+|.+...+..+. .-..+...+..+++.+..+ .+.+.++..+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~ 593 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVC 593 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence 2367788888999999988877543 34667777777775433 3333445577777766443 2445555555
Q ss_pred HHHccc--cchHHHHHHHHHHHHHHHHhChHH
Q 019679 192 MQWLKD--KVYSIRDAAANNVKRLAEEFGPDW 221 (337)
Q Consensus 192 ~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~ 221 (337)
...+.. -....|....+++|.+.....++.
T Consensus 594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe 625 (982)
T KOG2022|consen 594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEE 625 (982)
T ss_pred HHHhcccccCchHHHHHHHHHHHHHHhccHHh
Confidence 555544 345889999999999998887554
No 257
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.40 E-value=1.5 Score=31.95 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=36.3
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHH-hhhHhhHHhcCC---CcHHHHHHHHHHHHhcCcccC
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQ-HILPCVKELSSD---SSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~-~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~ 101 (337)
+.+..+.+-+.++++.+...|+..+..+.+++++.. +.. ..+.-+.+++.+ .++.||.-+++.+......++
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455555555666666666666666666666555531 111 222223333332 344566665555555555444
No 258
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=93.38 E-value=4.8 Score=36.71 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=88.6
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH----hhhHH
Q 019679 36 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI----EQLLP 111 (337)
Q Consensus 36 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~ 111 (337)
.....|-++.+|..+...+.......+.....-..+.....++.|.+..||....+.+..++...+.-... +-...
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34456788999999999999888887776555556777778899999999999999999998766543222 23334
Q ss_pred HHHHhh-cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679 112 IFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 112 ~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
.+++++ .|.+- ||..+++.+..+....--+ ..-+..+..+.-|..+.-|....+.+..+++.
T Consensus 361 rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~ 423 (740)
T COG5537 361 RILEFLRTDSDC-VRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICKI 423 (740)
T ss_pred HHHHHHhhccch-hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 444444 45555 9999999988776542211 11222233334444444444444444444443
No 259
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=9.9 Score=38.44 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=122.2
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhhc---CCChhHHHHHHHhHHHhHhhh----chhhHHhh
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVI----GIDLLSQS 147 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~ 147 (337)
....+...||....+++..+.+..|..... ..+..++-.... .+...+-..+..++.-+...+ +.+.+ ..
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-~~ 928 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-LD 928 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-HH
Confidence 344566688888889999998888754433 233333333322 223455555666665555432 22222 33
Q ss_pred HHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhCh-----------------------------hhHHHHHHHHHHHHccc
Q 019679 148 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV-----------------------------GFFDDKLGALCMQWLKD 197 (337)
Q Consensus 148 llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~l~d 197 (337)
++..+..+. +..+-.+--.++..+..+..++.. +..--.++..+.++..|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 444443333 223333444444444444433211 00011244455566788
Q ss_pred cchHHHHHHHHHHHHHHHHhChH-----H---HHhhHHHHHHHhh-c-CcchH-------HHHHHHHHHHHhccccChH-
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPD-----W---AMQHIVPQVLEMI-N-NPHYL-------YRMTILQAISLLAPVMGSE- 259 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~-----~---~~~~l~~~l~~~~-~-~~~~~-------vR~~~~~~l~~l~~~~~~~- 259 (337)
+-.+||..|++++=++....|.. | +-..++|.+-..- + -..|. --++.+..++.++..+...
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 89999999999999998877642 1 1223444332100 0 01121 2245667777776654322
Q ss_pred ----------HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 260 ----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 260 ----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
...+.++.++..+..|.++++..++++++..+..
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2356788889999999999999999999988864
No 260
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=7.1 Score=36.71 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=85.2
Q ss_pred hHHHHhhHHHHHHHhhcC--------cchHHHHHHHHHHHHhccccChH-----HHHhhHHHHHHhhccCCChhHHHHHH
Q 019679 219 PDWAMQHIVPQVLEMINN--------PHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVA 285 (337)
Q Consensus 219 ~~~~~~~l~~~l~~~~~~--------~~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~ 285 (337)
++...+.+++.+...+.. .+.+..+.+++.+.++...+.+. .+..-+++++...+.++.--.|.+++
T Consensus 402 ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 402 KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 344466788888888731 24666778888888876543321 12334677888888999999999999
Q ss_pred HHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 286 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
..++.+...+..............+++++.+-.|+..|+-|+.-+...
T Consensus 482 e~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 482 EFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 999999777776666667777777888888888999999999877653
No 261
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.17 E-value=2.6 Score=31.07 Aligned_cols=87 Identities=7% Similarity=0.048 Sum_probs=61.1
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHHH
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSV 299 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~ 299 (337)
..+..+..-+++++..+...|+..+..+...+|..+. ...++..+..++. ..++.||..++..+..++..++++.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 4666777777888888888899999999988886543 2356666766665 4567899999999999988876542
Q ss_pred HHHhhhHHHHhh
Q 019679 300 VEKSIRPCLVEL 311 (337)
Q Consensus 300 ~~~~i~~~l~~l 311 (337)
-...+......|
T Consensus 121 ~l~~i~~~y~~L 132 (142)
T cd03569 121 QLKYVVDTYQIL 132 (142)
T ss_pred ccHHHHHHHHHH
Confidence 223344444333
No 262
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=93.01 E-value=5.4 Score=34.36 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-----
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE----- 157 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~----- 157 (337)
.+-+..+.+.++++-..++. ..+.-+..-+.++.|.+..||..|++.|+.+++. +.+ ..+.+.+.++++
T Consensus 38 ~k~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~-~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DAL-SRVNDVLVQLLNKASLT 111 (460)
T ss_pred hHHHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC---chh-hhhHHHHHHHHHHHHHH
Confidence 34556667777777666653 2344556666777777778888888887777764 111 222222222211
Q ss_pred -------CCchHHHHHHHHHhhHhHhhhChh----hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHHH
Q 019679 158 -------DRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAM 223 (337)
Q Consensus 158 -------d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~ 223 (337)
-.+..+|.-+...+..=.-.++.+ .....++.-+...|.|-..+--......|+.+.. ++ ++.-.
T Consensus 112 ~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~-~~~k~~~a~l 190 (460)
T KOG2213|consen 112 GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS-LQTKAGEARL 190 (460)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc-ccCCCCHHHH
Confidence 124556665555444322222222 2334455555666666555433333333333321 11 11112
Q ss_pred hhHHHHHHHh-----h--cCcchHHH--HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCC-hhHHHHHHHHHHHHhh
Q 019679 224 QHIVPQVLEM-----I--NNPHYLYR--MTILQAISLLAPVMGSEITCSQLLPVVINASKDRV-PNIKFNVAKVLQSLIP 293 (337)
Q Consensus 224 ~~l~~~l~~~-----~--~~~~~~vR--~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~ 293 (337)
+.+...+... + .|.++--| .++..+++.++....+..|..++-..+...-.|.. .+.+....++|+.+..
T Consensus 191 qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss 270 (460)
T KOG2213|consen 191 QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSS 270 (460)
T ss_pred HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCc
Confidence 2233322222 1 12232222 33444455555555444333332222222223332 3455567777777765
Q ss_pred hh
Q 019679 294 IV 295 (337)
Q Consensus 294 ~~ 295 (337)
..
T Consensus 271 ~t 272 (460)
T KOG2213|consen 271 YT 272 (460)
T ss_pred cc
Confidence 54
No 263
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.01 E-value=0.35 Score=36.53 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhh
Q 019679 41 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLL 117 (337)
Q Consensus 41 d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l 117 (337)
|.--++|++|.+++..+.+.+........++..+...+.| +..+|..+...+.+++...+..... +.+.+.+...+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 4456899999999999988766554455667888888999 8899999999999998776654433 45666666555
No 264
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.95 E-value=2.6 Score=30.87 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=36.7
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhhh
Q 019679 266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSED------PDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~~ 335 (337)
+-.+.+-++.+++.|...|+..|..+.+.+|..+. ...++..|.++..+ .+.+|+..+...+...+..|+
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34444555556666666666666666666555321 12334444444432 345566666666666665554
No 265
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=2.7 Score=38.73 Aligned_cols=280 Identities=16% Similarity=0.068 Sum_probs=141.7
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
-+..+.+.+..+++.++..++-.++-....+..+ .+-.+-.+...++.++..+|..++-.++..-.-...+ ++.
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e----~V~ 489 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE----EVL 489 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH----HHH
Confidence 4556666666666666766666655443332221 1224445666677788888888888777654433322 333
Q ss_pred HHHHHhhcCCChh--HHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhhHHHH
Q 019679 111 PIFLSLLKDEFPD--VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDK 186 (337)
Q Consensus 111 ~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 186 (337)
..+...+.|.++. |..-+.-+++.+.-..-.+.+...++..+.+..+ -++...|-..+ +.-.-++|+...
T Consensus 490 ~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~L---GL~llflgkqe~--- 563 (878)
T KOG2005|consen 490 ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLAL---GLALLFLGKQES--- 563 (878)
T ss_pred HHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHH---HHHHHHhcccch---
Confidence 3555555665544 5555555555543222233444566666655432 12223443332 112223343322
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--H--hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--M--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 262 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~--~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 262 (337)
.+.+.+.++.-+..+|..+- .+-..+...|.-.. . +.++...-+...+... ...-++.-+..+ ..|.+.-.
T Consensus 564 -~d~~~e~~~~i~~~~~~~~~-~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~-~~~~avLgiAli--AMgeeig~ 638 (878)
T KOG2005|consen 564 -VDAVVETIKAIEGPIRKHES-ILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLES-EQELAVLGIALI--AMGEEIGS 638 (878)
T ss_pred -HHHHHHHHHHhhhHHHHHHH-HHHHHhhccccCceEEechhhhhhhcCCCccchhh-hccchhhhhhhh--hhhhhhhh
Confidence 22222223322333333322 22222222222111 1 1111111111111111 111222222222 23444334
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
+..+-.+-.++.-.++.+|++.=-+++.++-. .++ -.+++.|.++..|.+.+|-..++-+++.+.
T Consensus 639 eM~lR~f~h~l~yge~~iRravPLal~llsvS-NPq---~~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 639 EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-NPQ---VNVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-CCc---chHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 45667777788888899999998888888532 221 378899999999999999999888887653
No 266
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.91 E-value=2.9 Score=30.90 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=68.1
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~ 153 (337)
...++|..-...|..+..= . .| ..+.+..+.+-+...++.|...|+..+..+++..|... -...++..+.
T Consensus 13 l~~~dw~~il~icD~I~~~-~-~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD-E-NG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC-C-cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3456787777777766542 1 12 24566777777788889999999999999998888533 2345666777
Q ss_pred HHhcC-CchHHHHHHHHHhhHhHhhhCh
Q 019679 154 ELAED-RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 154 ~~~~d-~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.++.+ .+..||.-+++.+..++..+..
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 77766 6677888888888887777653
No 267
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.79 E-value=3 Score=30.76 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=28.8
Q ss_pred hhHHhcCCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhc
Q 019679 73 CVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG 140 (337)
Q Consensus 73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 140 (337)
.+++-++++++.+...|+..+..+...+|. +.....++..+..++. ..++.|+..++..+......++
T Consensus 45 al~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 45 ALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 333334444444444444444444443332 2233333344444443 2334455544444444444443
No 268
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.79 E-value=2.6 Score=30.66 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=48.2
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCC---CCccHHHHHHHHHHHHHHhhhC
Q 019679 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSED---PDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d---~~~~vr~~a~~al~~l~~~~~~ 336 (337)
..+..+.+-+..+++.++..|+..|..+.+.+|..+. ...++.-|..+..+ .+..||..+.+.+...+..|+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4455666667777788888888888888777776422 12344445555543 3667888888888888777764
No 269
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=92.56 E-value=6.8 Score=34.36 Aligned_cols=290 Identities=11% Similarity=0.080 Sum_probs=136.6
Q ss_pred CChHHHHHHHHHhHHHHHHhhCH-H-----HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh--hH-----Hh
Q 019679 41 DNEAEVRIAAAGKVTKICRILNP-E-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--AT-----IE 107 (337)
Q Consensus 41 d~~~~vR~~a~~~l~~~~~~~~~-~-----~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~-----~~ 107 (337)
..+..|+.....+++...+.-.. . .+...++..+.+..+.++..|-..+++++|+++-.-.+. .. .+
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34566788888888777643111 1 223446788888888889999999999999998532211 11 12
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-ch-----hhHHhhHHHHHHHHhcC--CchH----HHHHHHHHhhHhH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLLSQSLLPAIVELAED--RHWR----VRLAIIEYIPLLA 175 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~-----~~~~~~llp~l~~~~~d--~~~~----vr~~~~~~l~~l~ 175 (337)
.++..+..++...+|.--+...-..+.+...+ +. +...-.++|.+.....- .+.. ........++..+
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 34555555555444332222222222222221 11 12222355544443311 1111 1111222222222
Q ss_pred hhhChhhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcC-cchHHHHHHHHHHHH
Q 019679 176 SQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINN-PHYLYRMTILQAISL 251 (337)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~ 251 (337)
+.+.+-.+...+.-.+.+++.. .++..++.....+...++.-.. ......++..+.++... +...-+.-.+..+..
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 2221111111222223333322 2344555555555544332100 01112233333333332 111111112222222
Q ss_pred hcc-----ccChHH-----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh------hcHHHHHHhhhHHHHh-hhCC
Q 019679 252 LAP-----VMGSEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI------VDQSVVEKSIRPCLVE-LSED 314 (337)
Q Consensus 252 l~~-----~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~------~~~~~~~~~i~~~l~~-l~~d 314 (337)
.++ ..|.+. ..++++..+...+...+......+.-+++.++.. +-.+.+.++++..|.+ --.|
T Consensus 293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd 372 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD 372 (604)
T ss_pred hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 221 123222 1335788888888888888888899999998743 2223444555555544 3345
Q ss_pred CCccHHHHHHHHHHHH
Q 019679 315 PDVDVRFFATQALQSK 330 (337)
Q Consensus 315 ~~~~vr~~a~~al~~l 330 (337)
.+.+++..+..||..+
T Consensus 373 gnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 373 GNVERQHACLSALRNL 388 (604)
T ss_pred ccchhHHHHHHHHHhc
Confidence 5667777788887765
No 270
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.40 E-value=6.5 Score=33.73 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=96.7
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHH-------HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAI-------QHILPCVKELSSDSSQHVRSALATVIMGMAPI 99 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~-------~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 99 (337)
.+++.+...+..-+-+.|+.+...+..+...-... ... ..++..+...-++++. -..+-..+....+.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHhh
Confidence 35666666666666777777777776665542111 011 2234444444444332 12222222222211
Q ss_pred --cChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhH---HhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679 100 --LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYI 171 (337)
Q Consensus 100 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l 171 (337)
+-........+..+.+.+..++.+|-..|..++..+...-. .+.+ .+.++..+..++.++++-+|..++..+
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 00011112233345566777778888888877776554311 1111 134555667777888888888888888
Q ss_pred hHhHhhhChh------hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679 172 PLLASQLGVG------FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 216 (337)
Q Consensus 172 ~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 216 (337)
+.+...-... ...+.-+..++.+|+|++..++..|...+.-+...
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 8776433211 12345677778888888888888887777766543
No 271
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.98 E-value=6.8 Score=33.09 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChHHHHh---hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH
Q 019679 186 KLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQ---HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 261 (337)
Q Consensus 186 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~ 261 (337)
.+-..+.++|+=. ...|...|+.....+.+.+|++...+ ...|-+..++...+-.||-..+..+...--.+|. ..
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L 132 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-AL 132 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HH
Confidence 3444555555533 34788888889888888888775432 3445566666777788888888888876656665 33
Q ss_pred H---hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679 262 C---SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329 (337)
Q Consensus 262 ~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 329 (337)
. ..++..++..+.|+..++-..+.+.+..+...++.+.|...+--.+. .++++|..|..-+..
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLR 198 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHH
Confidence 3 34555566667888899999999999999988888765554443333 467777777666554
No 272
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.86 E-value=0.59 Score=35.32 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 64 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~ 64 (337)
|.--.+|+++-+++..+............++..+...+.| +..+|..+...+.+++...+..
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~ 99 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE 99 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence 5566899999999999999888877777889999999999 9999999999999998765443
No 273
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=8.2 Score=34.97 Aligned_cols=280 Identities=14% Similarity=0.066 Sum_probs=136.8
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
-+..+.+.+....+.++..++-.++--+...-. -.+-.+-.+.+.++.++...+.+++-.++..-.-... ++++
T Consensus 414 gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~--E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl 487 (881)
T COG5110 414 GLETLDKYLYADESYRKAGALLGIGLSGLRVFE--ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVL 487 (881)
T ss_pred hHHHHHHHHhcCcccccccceeeeeeccccccc--ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHH
Confidence 455666666555555555555444322211111 1233455667778888888888888777765543333 3444
Q ss_pred HHHHHhhcCCCh--hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhhHHHH
Q 019679 111 PIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDK 186 (337)
Q Consensus 111 ~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 186 (337)
..+....-+.+. ++..-+.-+++.+.-..-...+...++..+.+.-+ .+..-+|..++. .-.-+.|...-.+.
T Consensus 488 ~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLg---La~Lf~g~~d~~d~ 564 (881)
T COG5110 488 ELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALG---LASLFYGRKDQVDD 564 (881)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHHHccccchhHH
Confidence 555555545555 44444444444432211123444566666665432 222224444322 22222333322222
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc---chHHHHHHHHHHHHhc---cccChHH
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLA---PVMGSEI 260 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~vR~~~~~~l~~l~---~~~~~~~ 260 (337)
+...+.. ++.+- ......+...+...|.-. ..++..++....+. ....-.+.++.++.++ -..|.+.
T Consensus 565 v~eti~a-Ieg~l----s~~~eiLv~~c~Y~GTGd--vl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedi 637 (881)
T COG5110 565 VEETIMA-IEGAL----SKHEEILVKGCQYVGTGD--VLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDI 637 (881)
T ss_pred HHHHHHH-hcchh----hhhHHHHHhhceecccCc--HHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchh
Confidence 2222211 11100 011112222222222111 01222222221111 1122234444444432 2245554
Q ss_pred HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
-.+.++-++..++.-.++.+|...=-+++.+...-+ ...+++.|.+..+|.+-+|-..++-|++-+
T Consensus 638 g~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP----Qm~vfDtL~r~shd~dl~v~~ntIfamGLi 703 (881)
T COG5110 638 GSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP----QMNVFDTLERSSHDGDLNVIINTIFAMGLI 703 (881)
T ss_pred hHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----chHHHHHHHHhccccchhHHHHHHHHhhcc
Confidence 455677777788888888999888777777754222 246788888889998888888877776654
No 274
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.32 E-value=2.9 Score=30.39 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=37.6
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCCCC--ccHHHHHHHHHHHHHHhhh
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSEDPD--VDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d~~--~~vr~~a~~al~~l~~~~~ 335 (337)
.+..+.+-+..+++.+...|+..|..+.+.+|.... ...++..|..+..++. +.|+..+...+...+..|+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 344455555556666666666666666666555321 2334455555444432 1266666666666665554
No 275
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=91.26 E-value=4 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHh
Q 019679 183 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 183 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~ 217 (337)
+...++|.+.+.++ ...++.|-++...++.++...
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~ 38 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV 38 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc
Confidence 34556777777776 566677777777777776554
No 276
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=20 Score=36.53 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=122.8
Q ss_pred hhcCCChhHHHHHHHhHHHhHhhhchhhHH--hhHHHHHHHH---hcCCchHHHHHHHHHhhHhHhh----hChhhHHHH
Q 019679 116 LLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQ----LGVGFFDDK 186 (337)
Q Consensus 116 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~llp~l~~~---~~d~~~~vr~~~~~~l~~l~~~----~~~~~~~~~ 186 (337)
.+....-+||.....++-.+.+..|.-.+. +.++..+... .......+-.....++..++.- ++.. ....
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~s-ci~~ 928 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTS-CILD 928 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChH-HHHH
Confidence 344566799999999999999888754331 2233333322 2222233333334444444432 2332 2344
Q ss_pred HHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhCh-------H-----------------HHH-h----hHHHHHHHhhcC
Q 019679 187 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP-------D-----------------WAM-Q----HIVPQVLEMINN 236 (337)
Q Consensus 187 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~-------~-----------------~~~-~----~l~~~l~~~~~~ 236 (337)
+++.+..+-+ .++.++--.|+..+..+++.+.. + +.. + -++.++.++..|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 5665555443 23445555555555555544311 1 111 1 245677777788
Q ss_pred cchHHHHHHHHHHHHhcccc----ChHH----HHhhHHHHHHhhcc---CCC--hhH----HHHHHHHHHHHhhhhcHH-
Q 019679 237 PHYLYRMTILQAISLLAPVM----GSEI----TCSQLLPVVINASK---DRV--PNI----KFNVAKVLQSLIPIVDQS- 298 (337)
Q Consensus 237 ~~~~vR~~~~~~l~~l~~~~----~~~~----~~~~l~~~l~~~l~---d~~--~~v----r~~a~~~l~~i~~~~~~~- 298 (337)
....||-.|++.+=++.... +... +...++|.+-..-. ++. .++ -...+.+++.+++.+...
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88999999998888875443 4432 33445555541100 111 122 123456677777665442
Q ss_pred ----------HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 299 ----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 299 ----------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
...+.++..++.+..|.++++...|++++..+.
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 345788899999999999999999999988764
No 277
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=90.95 E-value=13 Score=40.47 Aligned_cols=217 Identities=15% Similarity=0.183 Sum_probs=123.8
Q ss_pred HHHHhhcCCChhHHHHHHHhHHHhHhhhch------hhH--HhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 112 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI------DLL--SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 112 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~--~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
.+...+...++++|..+......+...... -.. .+.++..+..+ +.|.++.+|......+. ..+.+..
T Consensus 485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~l 561 (2341)
T KOG0891|consen 485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQL 561 (2341)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhh
Confidence 355566677899999997766655544221 111 23444444433 46778888888777766 3333333
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc----CcchHHHHHHHHHHHHhccc--c
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPV--M 256 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~vR~~~~~~l~~l~~~--~ 256 (337)
..+..+...+..+.|..-.++.++...++.++..- +....+.+-....+..+ +...++......-+..+... .
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~-~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYN-PAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhcccccccc-HHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 34456667788889999999999999988776532 22222222222222222 22222322222222222111 1
Q ss_pred ChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC-CccHHHHHHHHHHHHHH
Q 019679 257 GSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ 332 (337)
Q Consensus 257 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~l~~ 332 (337)
.-..+...++-.+...+.|+...+-.++..+++.++...|.+ ......++.+.+...|. ...-|..+-++++.+.+
T Consensus 641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 122334455566677778888888889999999998877732 22234444444444443 45567777787777654
No 278
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=90.89 E-value=0.54 Score=23.82 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcC
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 119 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 119 (337)
|.||..++.+|+++.. +..++.+.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD--------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence 4578888888887753 3344566666554
No 279
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=90.81 E-value=4.3 Score=28.56 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=27.0
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 260 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~ 260 (337)
..++..+..-+++++|++...++..+..+...+|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 3466667777777788888888888888877777653
No 280
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=90.74 E-value=3.3 Score=38.49 Aligned_cols=174 Identities=17% Similarity=0.102 Sum_probs=96.6
Q ss_pred CCChHHHHHHHHHhHHHHHHhhCHH-----------HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh-
Q 019679 40 RDNEAEVRIAAAGKVTKICRILNPE-----------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE- 107 (337)
Q Consensus 40 ~d~~~~vR~~a~~~l~~~~~~~~~~-----------~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~- 107 (337)
+.++...|..-+.++..++-.+-|. .+.+.++..+..-.++.+..+|-.+++.+.++...+|-.....
T Consensus 206 g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sf 285 (993)
T COG5234 206 GQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESF 285 (993)
T ss_pred cccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHH
Confidence 4455667777666777666544331 3445566666667778888999999999999888776432211
Q ss_pred -hhHHH-----HHHhhc------CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc--------CCchHHHHHH
Q 019679 108 -QLLPI-----FLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAI 167 (337)
Q Consensus 108 -~l~~~-----l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--------d~~~~vr~~~ 167 (337)
+++.. +.+.++ +.++.+-..++.-++ +++..+.+-..-.+.|.+.+.++ .+-..+|.++
T Consensus 286 i~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 286 IDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeeccc
Confidence 12221 222222 234555555555554 44433322221224454444331 1122467776
Q ss_pred HHHhhHhHhhhChhh---HHHHHHHHHHH-HccccchHHHHHHHHHHHHHH
Q 019679 168 IEYIPLLASQLGVGF---FDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLA 214 (337)
Q Consensus 168 ~~~l~~l~~~~~~~~---~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~ 214 (337)
.-.+..+........ ....+.-.+++ .+-|++-.+|.+|..++-...
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 666665554432211 22334555555 788999999999887776554
No 281
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=90.71 E-value=5.5 Score=35.23 Aligned_cols=147 Identities=15% Similarity=0.072 Sum_probs=87.9
Q ss_pred HHHHHHHHccccc--hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccC---hHH
Q 019679 187 LGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMG---SEI 260 (337)
Q Consensus 187 l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~---~~~ 260 (337)
.++.++.++..++ ..||-.+.+.|.++...-..+.+...-+..++.+.+.+. .......+..++.+-+... ...
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455556665544 478999999999887654444444444556666655433 2222333444444432211 111
Q ss_pred HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
.....++.++-......+.+-+.++-+|++++-+-|.. .+...+...|-.+....|.-.|+.||-|+..++..
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 22234555555566666777777888888886554432 33445666666677777888899999999888754
No 282
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=90.53 E-value=4.8 Score=28.64 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=39.1
Q ss_pred HhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679 145 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 145 ~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 217 (337)
...++|.+.+.++ ......|.++...++.++....-.. ..+.++..+......... ...++.++..+.+..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4567777777776 6666777777777777776653221 122233333222222222 355666777666554
No 283
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.42 E-value=35 Score=38.47 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=101.6
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHh----Ch-H-----HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF----GP-D-----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 254 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~-~-----~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~ 254 (337)
..+++.+...++.++.+++.+...++..+.... |. + .+...+++.+..+.-++.|..|...+..|+.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 457888889999999999999999998886543 31 1 2356688888888889999999999988888877
Q ss_pred ccChHHH---HhhHHHHHHhhccCCChhHHH----HHHHHHHHHhhhh----cH-----HHHHHhhhHHHHhhhCCCCcc
Q 019679 255 VMGSEIT---CSQLLPVVINASKDRVPNIKF----NVAKVLQSLIPIV----DQ-----SVVEKSIRPCLVELSEDPDVD 318 (337)
Q Consensus 255 ~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~i~~~~----~~-----~~~~~~i~~~l~~l~~d~~~~ 318 (337)
....... ...++..+.-.+.|...++.. .+-..+..+...+ +. ....+.+-++...+. +++..
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~-npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF-NPNSD 1141 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc-CCchH
Confidence 7764433 234555566666666555444 2333333333222 11 122333444444444 56779
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 019679 319 VRFFATQALQSKDQVMMS 336 (337)
Q Consensus 319 vr~~a~~al~~l~~~~~~ 336 (337)
||..+.+.|..+....|.
T Consensus 1142 VR~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGK 1159 (3550)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999887654
No 284
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=90.42 E-value=8.5 Score=31.30 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=70.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHh----Ch------HH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--h---
Q 019679 195 LKDKVYSIRDAAANNVKRLAEEF----GP------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--S--- 258 (337)
Q Consensus 195 l~d~~~~vr~~a~~~l~~~~~~~----~~------~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~--- 258 (337)
++|+++.|.+.++.+...+.... .. .| ....+-..+...+.+.++.+|.+++.++..+..... .
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 55666666666666665554331 00 01 123455566667777788889888888887642211 0
Q ss_pred ---------------------------HHHHhhHHHHHHhhccCCC--hhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHH
Q 019679 259 ---------------------------EITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV 309 (337)
Q Consensus 259 ---------------------------~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~ 309 (337)
+.....++..++..+.++. +.+=.+++.+|..+++.=+ .+...+++.|.
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP--~~~~~Il~~ll 159 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP--QFMSRILPALL 159 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG--GGHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 0112357788888887776 5666677888888876433 24567888888
Q ss_pred hhhCCC
Q 019679 310 ELSEDP 315 (337)
Q Consensus 310 ~l~~d~ 315 (337)
.+-.+.
T Consensus 160 ~~~~~~ 165 (239)
T PF11935_consen 160 SFNPNL 165 (239)
T ss_dssp HHHHS-
T ss_pred hcCccc
Confidence 765543
No 285
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=90.23 E-value=1.9 Score=31.61 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=49.7
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHH-hhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 107 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~-~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 107 (337)
+++-..+..++.+++++|++.|+.++...-. .+.+ + -..+..+++|.. .|.........-....-++....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~p-----Y-~d~L~~Lldd~~--frdeL~~f~~~~~~~~I~~ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTP-----Y-KDNLENLLDDKT--FRDELTTFNLSDESSVIEEEHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHh-----H-HHHHHHHcCcch--HHHHHHhhcccCCcCCCCHHHHh
Confidence 4677788899999999999999999987644 2111 1 234556777764 44444433322211111234567
Q ss_pred hhHHHHHHhh
Q 019679 108 QLLPIFLSLL 117 (337)
Q Consensus 108 ~l~~~l~~~l 117 (337)
.++|++++.+
T Consensus 88 ~l~pvvlRIL 97 (141)
T PF07539_consen 88 ELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHH
Confidence 7888887776
No 286
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=90.10 E-value=15 Score=33.73 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=56.9
Q ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH-HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-hH---HHH
Q 019679 188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SE---ITC 262 (337)
Q Consensus 188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~---~~~ 262 (337)
...++....|-.+.+|..+...++...+.+ ++.+ .-..+.+.-=.+.|.+..+|......+..++.... .+ .+.
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lv-P~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLV-PDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcc-hHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 344455666777777777777776666555 2322 22233334444556666777777666666654332 11 234
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
+.+..-++..+.-...-||..+++.+..+.
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 445555555543333337777777666664
No 287
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.04 E-value=17 Score=34.31 Aligned_cols=302 Identities=15% Similarity=0.158 Sum_probs=159.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHH-HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hh-
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DA- 104 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~-~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~- 104 (337)
.-+|....++...++.+...|...+..++-.-.+ ..+ .-.-+|.+..++...+..|+..+|-++.++.---.. +.
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3467777888888888887777666655432211 111 222577888899999999999999999998732211 11
Q ss_pred ---HHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhh--hchhhHHhhHHHHHHHHh-------cCCc-------hHHH
Q 019679 105 ---TIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELA-------EDRH-------WRVR 164 (337)
Q Consensus 105 ---~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~llp~l~~~~-------~d~~-------~~vr 164 (337)
....=+|.+.++++. .|.+||+.+.-.+=.+.+. +.... ...-++.+...+ .+++ ..+=
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLI-ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHH-HHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 112235667777764 4678887776555555443 11110 111112221110 0000 0011
Q ss_pred HHH------------------------HHHhhHhHhh-hChhhHHHHHHHHHHHHccccchHHHH---------------
Q 019679 165 LAI------------------------IEYIPLLASQ-LGVGFFDDKLGALCMQWLKDKVYSIRD--------------- 204 (337)
Q Consensus 165 ~~~------------------------~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~--------------- 204 (337)
..+ +..|..+++. .+.....++-++-++..+..-++.+..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 111 2222222221 112112222333333333222222220
Q ss_pred --------HHHHHHHHHHHH---------h--------ChHHH-HhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccC
Q 019679 205 --------AAANNVKRLAEE---------F--------GPDWA-MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG 257 (337)
Q Consensus 205 --------~a~~~l~~~~~~---------~--------~~~~~-~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~ 257 (337)
....+++.-.+. + |.++. .+.++..-+.++. ..+..+-++++.++..+....+
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 011112211111 0 01111 2334444333333 4557788888888888864433
Q ss_pred h-------HH-HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCC------CccHHHH
Q 019679 258 S-------EI-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDP------DVDVRFF 322 (337)
Q Consensus 258 ~-------~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~------~~~vr~~ 322 (337)
. .. ..+..+|.+..++...+..|..+++.+|..++-...+. .+..+.+|-|...+.+. ++++-..
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 2 11 24567899999999999999999999999998766554 33356666666666553 3566677
Q ss_pred HHHHHHHHHH
Q 019679 323 ATQALQSKDQ 332 (337)
Q Consensus 323 a~~al~~l~~ 332 (337)
++..|..+.+
T Consensus 632 vc~tl~niv~ 641 (717)
T KOG1048|consen 632 VCHTLNNIVR 641 (717)
T ss_pred HHHhHHHHHH
Confidence 7777777763
No 288
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=89.68 E-value=8.3 Score=30.09 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=63.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC
Q 019679 196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 275 (337)
Q Consensus 196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 275 (337)
.-++|.+-...+..+..-...- ....+.+.....+++..+|.+++..+...... +.....+++.+...+.|
T Consensus 82 ~~~~W~~~D~~~~~~~~~~~~~------~~~~~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d 152 (197)
T cd06561 82 YIDNWDLVDSLCANLLGKLLYA------EPELDLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHD 152 (197)
T ss_pred CCchHHHHHHHHHHHHHHHHhc------CcchHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCC
Confidence 3466777666555443322211 11226777888888855555554444333322 23466788899999999
Q ss_pred CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhh
Q 019679 276 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 311 (337)
Q Consensus 276 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l 311 (337)
+..-||.+...+|..++.... +.+.+.+.+.
T Consensus 153 ~~~~Vqkav~w~L~~~~~~~~-----~~v~~~l~~~ 183 (197)
T cd06561 153 EEYFVQKAVGWALREYGKKDP-----ERVIAFLEKN 183 (197)
T ss_pred HHHHHHHHHHHHHHHHHhhCH-----HHHHHHHHHH
Confidence 999999999999999988743 3444444443
No 289
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=21 Score=34.43 Aligned_cols=143 Identities=10% Similarity=0.142 Sum_probs=99.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHh
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKEL 77 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l 77 (337)
+|..-.+++-.+..++..+|.... .-+|.+.+.+.. .++..-..+...++..+..+... .+....+|.+.+.
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHH
Confidence 477778889999999999988652 337777776643 47888888999999888887665 3344566777776
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCC--ChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLP 150 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~llp 150 (337)
+..+.. -..+...+.++++.+..+. ..+.++..+.+.+... .+..|...++++|.+.+...++...+.++.
T Consensus 558 Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 558 LHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred hcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 654433 3445555778887665433 2355566666666543 478999999999999999887665444433
No 290
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=18 Score=33.54 Aligned_cols=126 Identities=11% Similarity=0.148 Sum_probs=77.8
Q ss_pred HHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-----------------------HHHH
Q 019679 13 NQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-----------------------LAIQ 68 (337)
Q Consensus 13 ~~l~~~~~~~~~~~~-~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-----------------------~~~~ 68 (337)
..|+.++..+-.+.- -...+..+.+.+.+.++.+++.+...|..+...+-|. .+.+
T Consensus 192 ~kIA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~ 271 (704)
T KOG2153|consen 192 EKIASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQ 271 (704)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHH
Confidence 345555555543321 1235667778888888989999888887776644221 1111
Q ss_pred h-------hhHhhHHhcCCCc---H---HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHh
Q 019679 69 H-------ILPCVKELSSDSS---Q---HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 135 (337)
Q Consensus 69 ~-------ll~~l~~l~~d~~---~---~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 135 (337)
. .+..+.++..+.+ + ..-..|..++..+....+-....+.++..+..+++|....++..+++++..+
T Consensus 272 ~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~l 351 (704)
T KOG2153|consen 272 ALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTL 351 (704)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 1 2222222333331 0 2334566666666655554456788889999999999999999999999887
Q ss_pred Hhh
Q 019679 136 NQV 138 (337)
Q Consensus 136 ~~~ 138 (337)
.+.
T Consensus 352 f~~ 354 (704)
T KOG2153|consen 352 FEN 354 (704)
T ss_pred hcC
Confidence 764
No 291
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.39 E-value=5.5 Score=27.65 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCc----chHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679 226 IVPQVLEMINNP----HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 299 (337)
Q Consensus 226 l~~~l~~~~~~~----~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~ 299 (337)
++..+.+.+.|. +...|..++.+++.+.+..|+. .+.+++.-.+...+.. ++.|..+++++..+...++.+.
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHH
Confidence 445555555554 3456788888888888755532 2455666667776764 5799999999999998888754
No 292
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.31 E-value=16 Score=32.74 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=60.4
Q ss_pred hhHHHHHHHhhcCc--chHHHHHHHHHHHHhccccChHHH--HhhHHHHHHhhccC--CChhHHHHHHHHHHHHhhhhcH
Q 019679 224 QHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 224 ~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
.+++|.+...++.. ....-...+-++|..+........ ...++|.+.++++. .+.+..-..+..+-++..+-..
T Consensus 546 ~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t 625 (791)
T KOG1222|consen 546 ENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT 625 (791)
T ss_pred ccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 45778777776531 122333344455555433322221 23467777766632 2234444455556666554222
Q ss_pred HHH--H-HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 298 SVV--E-KSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 298 ~~~--~-~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
..+ . ...-.-|..+..|++.+||..+-.+|.-++.+
T Consensus 626 r~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 626 RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 211 1 12334455688999999999999999877754
No 293
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=89.18 E-value=0.64 Score=23.00 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCc
Q 019679 85 VRSALATVIMGMAP 98 (337)
Q Consensus 85 vr~~a~~~l~~l~~ 98 (337)
||..++.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57777777777775
No 294
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.76 E-value=6.2 Score=27.41 Aligned_cols=60 Identities=7% Similarity=0.069 Sum_probs=32.5
Q ss_pred CChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 120 EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 120 ~~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
....-|..++++++.+.+. +.+.+ .+.++..+...++.+ ..|..++++...+.+.++.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~-~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKL-GGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 3456677777777777773 32222 223333333333332 566666777766666666544
No 295
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=88.47 E-value=17 Score=32.07 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=46.9
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC------hHHHHhhHHHHHHh-hccCCChhHHHHHHHHHHHHh
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG------SEITCSQLLPVVIN-ASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~i~ 292 (337)
+++..+..++.+.+.....++..+++.++..=. ...+.++++..+.+ --.|.+-+++.+++.+|..++
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 477888888888888888888889998875422 22244455555554 234556677778888888885
No 296
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.43 E-value=8.1 Score=28.35 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=53.5
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
..+++|..=...+..+..-. ....+.+..+.+-+...++.+...|+..+..+++..|.... ...++..+.
T Consensus 18 ~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~ 91 (140)
T PF00790_consen 18 LPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELV 91 (140)
T ss_dssp SSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHH
Confidence 34556655444454443321 12345666677777777788888888888777777664332 223555555
Q ss_pred HHhcCCch--H--HHHHHHHHhhHhHhhhC
Q 019679 154 ELAEDRHW--R--VRLAIIEYIPLLASQLG 179 (337)
Q Consensus 154 ~~~~d~~~--~--vr~~~~~~l~~l~~~~~ 179 (337)
.++.++.. . ||.-+++.+......++
T Consensus 92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 92 KLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 54433221 1 66666666666666653
No 297
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=88.41 E-value=10 Score=29.54 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=16.1
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 216 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 216 (337)
+.+++.+...+.|++..|+.+...+|..++..
T Consensus 140 ~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 140 DLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 33444444445555555555555555555544
No 298
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=88.03 E-value=16 Score=31.24 Aligned_cols=136 Identities=11% Similarity=0.140 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCcccCh-hhHHhhhHHHHHH-hhcC---CChhHHHH-HHHhHHHhHhhhchh------hHHhhHHHH
Q 019679 84 HVRSALATVIMGMAPILGK-DATIEQLLPIFLS-LLKD---EFPDVRLN-IISKLDQVNQVIGID------LLSQSLLPA 151 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l~d---~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~llp~ 151 (337)
.+|+..++.+........+ +...+.++|.+.. .+.| +.|..|.. ++..+..+++.++.. .+.+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4677778888777765553 2234556666555 3433 44555543 444455555555431 223344444
Q ss_pred HHHHhcC---CchHHHHHHHHHhhHhHhhhCh------hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679 152 IVELAED---RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 219 (337)
Q Consensus 152 l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 219 (337)
..+++.+ ..|..|......+..+.+.+-. ......++..+...+++++.+|-+.++..+..+.+.+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4455533 4678999999999888877522 122345788888999999999999999999999887754
No 299
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.90 E-value=8.8 Score=28.16 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH----HHHHHHHHHccccc--hH--HHHHHHHHHHHHHHHh
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQWLKDKV--YS--IRDAAANNVKRLAEEF 217 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~d~~--~~--vr~~a~~~l~~~~~~~ 217 (337)
...+..+.+.+++.++.+...++..+..+++.+|...+.+ .++..+..++.+.. .. ||+.+...+......|
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666665543222 24444444443321 11 5666666666655555
No 300
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.78 E-value=21 Score=32.38 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=153.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcC
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSS 79 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~ 79 (337)
..-..|..+++.+.......+.+. ..++.-....++..+ ..+.|.++.+.+..+.+.-.. ......+...+..-..
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~ 80 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSN 80 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCC
Confidence 445678888888888887776633 244555555555444 467999999999999887544 1222233333333344
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHH---HH------------------------HHHhH
Q 019679 80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR---LN------------------------IISKL 132 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr---~~------------------------a~~~l 132 (337)
+++-..|..++..|.+=++.+. ....++.|.+...+......++ .. .+.-+
T Consensus 81 ~~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 158 (464)
T PF11864_consen 81 DDDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFL 158 (464)
T ss_pred chhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHH
Confidence 5555777888888876665442 1345666666665543221111 11 11111
Q ss_pred HHhHhhhc---hhhHHhhHHHHHHHHhcCCc-hHHHHHHHHHhhHhHhhh--ChhhHHHHHHHHHHHHccccchHHHHHH
Q 019679 133 DQVNQVIG---IDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAA 206 (337)
Q Consensus 133 ~~l~~~~~---~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a 206 (337)
..+.+.-. .+.....++..+..++...+ ...=..++..+..+..+. +.+. ...++..+-.... .....+.+
T Consensus 159 ~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~--~~~l~~~~ 235 (464)
T PF11864_consen 159 VNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVN--SVSLCKPS 235 (464)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhc--ccccchhH
Confidence 11111111 12223445555555543322 223356667777666532 3322 2334444333221 12555556
Q ss_pred HHHHHHHHHHhChHHHHhhHHHHHHHhh--cC----cchHHHHHHHHHHHHhccccChH------HHHhhHHHHHHhhcc
Q 019679 207 ANNVKRLAEEFGPDWAMQHIVPQVLEMI--NN----PHYLYRMTILQAISLLAPVMGSE------ITCSQLLPVVINASK 274 (337)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~----~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~ 274 (337)
-+.+..+++..-+ ...+..+++.+ .+ ++..+-..|+..++.+.-..|.+ .....++|.+...++
T Consensus 236 w~~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 236 WRTMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred HHHHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh
Confidence 6666666643322 23445555565 22 33455568888888875444221 112248999999998
Q ss_pred CCChhHHHHHHHHHHHHh-hhhcH
Q 019679 275 DRVPNIKFNVAKVLQSLI-PIVDQ 297 (337)
Q Consensus 275 d~~~~vr~~a~~~l~~i~-~~~~~ 297 (337)
-.+..|=......+..+. +.++.
T Consensus 312 ~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred CCCCeehHHHHHHHHHHHhHhhhh
Confidence 777777777777766666 44443
No 301
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=87.69 E-value=0.82 Score=24.91 Aligned_cols=27 Identities=37% Similarity=0.260 Sum_probs=14.0
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
.+|.|..++...+++++..++.+|..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 444444444444555555555555554
No 302
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=87.00 E-value=3.1 Score=27.54 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=9.5
Q ss_pred CcHHHHHHHHHHHHhcCcccC
Q 019679 81 SSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~ 101 (337)
++..||...++++..+....|
T Consensus 30 ~~~~vre~il~ci~qil~~~~ 50 (86)
T PF09324_consen 30 PSIDVRELILECILQILQSRG 50 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444333
No 303
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=86.79 E-value=42 Score=34.82 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=51.4
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
..+-.+++.|+..+..|..+++.+|-++.-....+ ....--.+.|.++...+...+-..++.||.++.
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46778888889988899899998888886544332 223457788889988888888778888887764
No 304
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=3.9 Score=36.78 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=75.2
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhc---cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLA---PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--- 298 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--- 298 (337)
.+...+.+.+.+|.-.+.-.+...+..+. ..++..+....+++.+.+++..++...|.+....+.-+.-....+
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 46667777888877666655555555553 234566667789999999998888889988888888776554433
Q ss_pred -HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 299 -VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 299 -~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
.....=...+..+.+|+++.|+..+.+.+.++.
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 122233445567899999999999888887653
No 305
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=86.58 E-value=6.4 Score=33.88 Aligned_cols=74 Identities=5% Similarity=0.092 Sum_probs=44.9
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHH
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
..+..|..-+++.+.+|-..|+..++++...||+.+. ...+...+..++. ..++.|+......+..+++.+..+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 3555666666666677777777777777777765432 2234555555555 344667766666666666655544
No 306
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=86.48 E-value=31 Score=32.88 Aligned_cols=286 Identities=9% Similarity=0.068 Sum_probs=158.2
Q ss_pred hHHHHHHHHHhHHHHHHhhCHHHH-HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc-cChhhHHhhhHHHHH---Hh-
Q 019679 43 EAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPI-LGKDATIEQLLPIFL---SL- 116 (337)
Q Consensus 43 ~~~vR~~a~~~l~~~~~~~~~~~~-~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~---~~- 116 (337)
++.+-..++++++.+.+.++-..+ .+..++.+.++++ ...+|.+|+.++-.+... ..+... -.++..+. ++
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dK-L~lln~L~q~l~lf 282 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDK-LALLNMLNQTLELF 282 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHH
Confidence 788999999999999988776632 3557777777776 667999999999887642 222211 12223321 11
Q ss_pred ---hcC--CChhHHHHHHHhHHHhHhhh--------ch------hh---HHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679 117 ---LKD--EFPDVRLNIISKLDQVNQVI--------GI------DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 174 (337)
Q Consensus 117 ---l~d--~~~~vr~~a~~~l~~l~~~~--------~~------~~---~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 174 (337)
-.| .++++-....+-+...+..+ +. +. ..-.++|.+.+.+.+.....-...+..+..+
T Consensus 283 g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy 362 (980)
T KOG2021|consen 283 GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY 362 (980)
T ss_pred hhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 123 34455444433333322111 00 00 1123677777777776666666666555554
Q ss_pred HhhhChh--------hHHHHHHHHHH-HHc------ccc----------chHHHHHHHHHHHHHHHHhChHHHHhhHHHH
Q 019679 175 ASQLGVG--------FFDDKLGALCM-QWL------KDK----------VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229 (337)
Q Consensus 175 ~~~~~~~--------~~~~~l~~~l~-~~l------~d~----------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 229 (337)
...+.+. ...++++.... +.. .|. ..++|+..-..+..+. ..+++.....+-..
T Consensus 363 l~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~s 441 (980)
T KOG2021|consen 363 LAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQS 441 (980)
T ss_pred HHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 4433211 12222332222 222 111 2367777544444443 34565443333333
Q ss_pred HHHhh---cCcchHHHHHHHHHHHHhccccChHH------------HHhhHHHHHHh--hccCCChhHHHHHHHHHHHHh
Q 019679 230 VLEMI---NNPHYLYRMTILQAISLLAPVMGSEI------------TCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 230 l~~~~---~~~~~~vR~~~~~~l~~l~~~~~~~~------------~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~i~ 292 (337)
+...+ +..+|..-+.|+..+=.+++....+. ....+++.+.. .+..+++.|..--...+.+..
T Consensus 442 lS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~ 521 (980)
T KOG2021|consen 442 LSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYN 521 (980)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHH
Confidence 33333 34679999999988888887654321 12234444433 346777888887777777766
Q ss_pred hhhcHHHHHHhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhhh
Q 019679 293 PIVDQSVVEKSIRPCLVELSED------PDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 293 ~~~~~~~~~~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~~ 335 (337)
+.+..+ ..-+|.+...+-| ++.+||..|.+.+..+.+.++
T Consensus 522 kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk 567 (980)
T KOG2021|consen 522 KFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK 567 (980)
T ss_pred HHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence 655433 2344555443332 567899998888777665543
No 307
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=86.44 E-value=1.3 Score=24.04 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
.+|.+.+++..+++.++..++.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555555555555666666666665553
No 308
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=86.21 E-value=24 Score=31.45 Aligned_cols=302 Identities=15% Similarity=0.109 Sum_probs=155.2
Q ss_pred cchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHH-------hhhHhhHHhcCCCcHHHHHHHHHHHHhcCc
Q 019679 29 SDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQ-------HILPCVKELSSDSSQHVRSALATVIMGMAP 98 (337)
Q Consensus 29 ~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~--~~~~-------~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~ 98 (337)
+.....+..++.. ..+++.+..+..+..+....+.- .+.+ ..-|++ .+++.+++.+...++..+..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 3455566666644 56778888888888777764331 1111 122333 36677888999999999988864
Q ss_pred ccCh---hhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCC--chHHHHHHHHH
Q 019679 99 ILGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR--HWRVRLAIIEY 170 (337)
Q Consensus 99 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~--~~~vr~~~~~~ 170 (337)
.-.. ......+.+.+...+... +......++.++..+...-... .+....++.+...++.. ..+....++-+
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 3221 112233455555666543 3566777778887776543322 12223445555544332 34555555555
Q ss_pred hhHhHhhhC-hh-hHHHHHHHHHHHHccccch-HHHHHHHHHHHHHHHHhC----hH----HHHhhHHHHHHHhhcCcch
Q 019679 171 IPLLASQLG-VG-FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFG----PD----WAMQHIVPQVLEMINNPHY 239 (337)
Q Consensus 171 l~~l~~~~~-~~-~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~----~~----~~~~~l~~~l~~~~~~~~~ 239 (337)
+..++-... .+ .....++|.+.+.+++... .|-..++.++..+...-. .. .+...=++.+++.++.+.|
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 555542211 11 1123577777777776432 333344445555544210 00 0111112333344433322
Q ss_pred H----------HHHHHHHHHHHhc-----------------cccChHHHH-----------hhHHHHHHhhcc-CCChhH
Q 019679 240 L----------YRMTILQAISLLA-----------------PVMGSEITC-----------SQLLPVVINASK-DRVPNI 280 (337)
Q Consensus 240 ~----------vR~~~~~~l~~l~-----------------~~~~~~~~~-----------~~l~~~l~~~l~-d~~~~v 280 (337)
. ++...-..+..+. .....+.|. -.++..+.+++. ..++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 1 1111111111111 111111121 134556666663 334556
Q ss_pred HHHHHHHHHHHhhhhcHH-HHHH--hhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 281 KFNVAKVLQSLIPIVDQS-VVEK--SIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 281 r~~a~~~l~~i~~~~~~~-~~~~--~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
-.-|+.=+|.++.+++.. ...+ .....+-++.++++++||..|..|++.+.
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 666777788888887422 2212 24444556788899999999999999874
No 309
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.86 E-value=6.1 Score=25.21 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccc-cChHHHHh-hHHHHHHhhc-cCCChhHHHHHHHHHHHHhhhhc
Q 019679 242 RMTILQAISLLAPV-MGSEITCS-QLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 242 R~~~~~~l~~l~~~-~~~~~~~~-~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
+.+++.+++.++.. .|-....+ .+++.+.++. ..+...+|-.+..+|+.++....
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence 45678888887654 34443332 5777777765 46678888888888888876543
No 310
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=85.55 E-value=24 Score=30.90 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=47.3
Q ss_pred hHHHHHHhhccCCC-hhHHHHHHHHHHHHhhhhcHH-HHHH--hhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 264 QLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS-VVEK--SIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 264 ~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~-~~~~--~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
.++..+.++|...+ |.+-.-|+.=++.+..+++.- ...+ .-...+-++++-+|++||+.|..|+..+...
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 46777777775555 555556777788887776532 1111 2334455778889999999999999887643
No 311
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=85.37 E-value=7.1 Score=25.84 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred HhhHHHHHHhh-ccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679 262 CSQLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQ 328 (337)
Q Consensus 262 ~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~ 328 (337)
...++.-+... ...++.+||.-.++++.++....|.. .-...++..+....+|.+.++-..|.+.+.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 33433333333 45566788888888888887766654 223567777777777777777777766654
No 312
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.62 E-value=12 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 186 KLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
+++..+.+-|++.++.|+.-+++.|..++.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 455555555555555555555555555544
No 313
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=83.95 E-value=12 Score=26.19 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=23.7
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
+.++..+.+.+++++|.+..-++..+..+++.+|...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 3455555666666677777777777777777666543
No 314
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.73 E-value=33 Score=30.96 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=52.4
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHH--hhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCccc----Chh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICR--ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKD 103 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~--~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~~~ 103 (337)
++-..+.....--.++.|...+.+|.-+-. .+.++. ++.++..++.-.+-..|..+...+......+ ..+
T Consensus 20 el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~~----LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~ 95 (616)
T KOG2229|consen 20 ELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAED----LLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKND 95 (616)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHHH----HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccc
Confidence 444444444445568899999888876643 234443 4444444544444456777766555544322 122
Q ss_pred hHHhhhHHHHHHhhcCCChh
Q 019679 104 ATIEQLLPIFLSLLKDEFPD 123 (337)
Q Consensus 104 ~~~~~l~~~l~~~l~d~~~~ 123 (337)
.....+-.++..++.++++.
T Consensus 96 klnkslq~~~fsml~~~d~~ 115 (616)
T KOG2229|consen 96 KLNKSLQAFMFSMLDQSDST 115 (616)
T ss_pred hHHHHHHHHHHHHHhCCCch
Confidence 23345666788888888775
No 315
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.62 E-value=15 Score=26.93 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=69.3
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 152 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l 152 (337)
...+++|..=...|..+..= . -| ....+..+.+-++..++.|...|+..+..+++..|.... ...++..+
T Consensus 13 ~l~~~dw~~ileicD~In~~-~-~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKE-P-EG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcC-C-cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 34567888777777777532 1 12 245667778888888999999999999999998886432 34456666
Q ss_pred HHHhcC------CchHHHHHHHHHhhHhHhhhCh
Q 019679 153 VELAED------RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 153 ~~~~~d------~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.+++.. .+..||.-+++.+...+..++.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 666642 4678888888888888877653
No 316
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.60 E-value=15 Score=26.75 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=61.9
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
..+++|..=...|..+..= . ......+..+.+-+...++.+...|+..+..+++..|.... ...++..+.
T Consensus 13 l~~~dw~~~l~icD~i~~~-~-----~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 13 LLEEDWELILEICDLINST-P-----DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred CCCcCHHHHHHHHHHHhCC-C-----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 3456776666666555332 1 12345667777788888899999999999988888775432 234566666
Q ss_pred HHhcCCch--HHHHHHHHHhhHhHhhhC
Q 019679 154 ELAEDRHW--RVRLAIIEYIPLLASQLG 179 (337)
Q Consensus 154 ~~~~d~~~--~vr~~~~~~l~~l~~~~~ 179 (337)
.++.++.. .||.-+++.+...+..+.
T Consensus 87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 87 KLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 66654332 377777777777776664
No 317
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=26 Score=31.58 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=74.6
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAI 152 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l 152 (337)
.+.+++|..-...|..+..--.. ..+.+..+.+.+++.++.|...|+..|..+++.+|... ..+.+++.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGG------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccC------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 56678998888888777543321 13677888899999999999999999999999888543 345677777
Q ss_pred HHHhcC--CchHHHHHHHHHhhHhHhhhCh
Q 019679 153 VELAED--RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 153 ~~~~~d--~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
....+. .+..||.-++..|..+.+.++.
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 766654 4668999999999999888865
No 318
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=82.83 E-value=45 Score=31.86 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=53.8
Q ss_pred HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679 67 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 67 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 137 (337)
...++..|..+..|+=+.|+.-++..+..+...-+++ ...++..+.+-+.|++..+-..|...|..+..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 3456778888999999999999999999887655543 35788888999999888777777777666543
No 319
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.75 E-value=65 Score=33.57 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCCCccHH
Q 019679 243 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVR 320 (337)
Q Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr 320 (337)
...+.++.+.+..-+.+ +. .+..-++....+.+...|..|+..+..+.+.+|..+ ...+.+|.|.++.+|.+.+|-
T Consensus 1522 ~~li~~i~~~~~a~~~d-~~-pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve 1599 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD-LK-PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVE 1599 (1621)
T ss_pred HHHHHHHHhhccCChhh-hH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHH
Confidence 33444455544333322 22 222333344467778999999999999999999874 467899999999999999999
Q ss_pred HHHHHHHHHHHHhhhC
Q 019679 321 FFATQALQSKDQVMMS 336 (337)
Q Consensus 321 ~~a~~al~~l~~~~~~ 336 (337)
..+.+.+..+-..+|+
T Consensus 1600 ~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1600 CLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHHHhch
Confidence 9999999988888875
No 320
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=82.52 E-value=47 Score=31.78 Aligned_cols=109 Identities=6% Similarity=0.005 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 262 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 262 (337)
++.+++.++..+-.|+-..|+..+++++..+...-..+ ...++..+++.+.|++..+-..|-..|..|...... ..
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn--MK 376 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN--MK 376 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc--ce
Confidence 35668888888889999999999999999888754333 457888999999999887776676666666433321 11
Q ss_pred hhHHHHHHhhccCCChh--HHHHHHHHHHHHhhhh
Q 019679 263 SQLLPVVINASKDRVPN--IKFNVAKVLQSLIPIV 295 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~--vr~~a~~~l~~i~~~~ 295 (337)
..++.-+..++-.++.. -...|+..|.++.-..
T Consensus 377 ~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lsh 411 (988)
T KOG2038|consen 377 IVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSH 411 (988)
T ss_pred eehHHHHHHHHcccCccccceeehhhhhhhhHhcc
Confidence 22344444444444433 3335566666665433
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.51 E-value=15 Score=26.17 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=18.3
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 257 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~ 257 (337)
.++..+..-+++.+.+|+..++..|..++....
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 455555555555555565556666655554433
No 322
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=82.23 E-value=23 Score=28.06 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=12.6
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHH
Q 019679 33 PAYVRLLRDNEAEVRIAAAGKVTKIC 58 (337)
Q Consensus 33 ~~l~~~~~d~~~~vR~~a~~~l~~~~ 58 (337)
.....+.+++..+.|..++..+...-
T Consensus 49 ~l~~~Lw~~~~~E~r~~al~~l~~~~ 74 (208)
T cd07064 49 ELVLELWQQPEREYQYVAIDLLRKYK 74 (208)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544433
No 323
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=81.71 E-value=17 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=13.6
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLA 214 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 214 (337)
++..+++...+.-..||..|..++..+.
T Consensus 8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 8 IIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334344444455555555555554
No 324
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=81.65 E-value=5 Score=36.17 Aligned_cols=107 Identities=10% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHh---ChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---
Q 019679 186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--- 259 (337)
Q Consensus 186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--- 259 (337)
.+.+.+...|++++..|...+...+..+.-.+ |.......++..+.+++...+...|....+.+..+.-.+.+.
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 46777788888887777777666665554333 334456678888888888777888888888888887666543
Q ss_pred -HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 260 -ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 260 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
+....=+.-++.+.+|+.+.|+....+.|..+.
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 222334667888999999999999999999885
No 325
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=81.55 E-value=49 Score=31.34 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=47.7
Q ss_pred HHHHhhHHHHHHhhccCC----ChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 259 EITCSQLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 259 ~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
+.|.++++..+.+++.|. ...+|..|.+.+..+... + ..-..+-+..+..|+.+.+|..+.+|.+.+.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k---D--~~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK---D--SSGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc---c--ccCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 457788888888887554 467888888887775321 1 0123345567888999999999999887654
No 326
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=81.46 E-value=19 Score=26.51 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHH-HHhhhCC---CCccHHHHHHHHHHHHHHhhh
Q 019679 276 RVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPC-LVELSED---PDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 276 ~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~-l~~l~~d---~~~~vr~~a~~al~~l~~~~~ 335 (337)
+++.|...|...|..+.+.+|.... ...++.. |.++..+ ....|+..+.+.+...+..|+
T Consensus 51 ~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 51 KNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 4455555556666666655554322 1233333 4444332 223556666666666655554
No 327
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=81.07 E-value=18 Score=26.59 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=32.7
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 159 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~ 159 (337)
+.+...+..++.+.+++|+..|++++-..-.. .+ ...-..+..+++|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~l-~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP----YL-TPYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHcCcc
Confidence 56778888999999999999999998776331 11 22234455566664
No 328
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.98 E-value=20 Score=26.41 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=53.8
Q ss_pred cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHH----HhhHHHH-H
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ-V 230 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~-l 230 (337)
..++|..-...+..+.. ...|+ ...+..+.+.+. ..++.|...|+..+..+.+..|...+ ...++.. +
T Consensus 15 ~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L 88 (141)
T cd03565 15 QSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVL 88 (141)
T ss_pred CCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHH
Confidence 34556555544444432 11222 234555555555 45677777778888888877775433 2344443 5
Q ss_pred HHhhcC---cchHHHHHHHHHHHHhccccChH
Q 019679 231 LEMINN---PHYLYRMTILQAISLLAPVMGSE 259 (337)
Q Consensus 231 ~~~~~~---~~~~vR~~~~~~l~~l~~~~~~~ 259 (337)
..++.. .+..|+...+..+..++..+..+
T Consensus 89 ~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 89 VKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 555542 23466777777777776665443
No 329
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.40 E-value=9 Score=30.10 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc---ccCh
Q 019679 184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMGS 258 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~---~~~~ 258 (337)
+..++|.++..|.+....-|.-|-..+..+.-..|.+. +..+++..+...+...+.++.+.++..+..+.- ..|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 34588999999988888778888888888877666432 256777788888888888898888888888753 3443
Q ss_pred H--HHHhhHHHHHHh
Q 019679 259 E--ITCSQLLPVVIN 271 (337)
Q Consensus 259 ~--~~~~~l~~~l~~ 271 (337)
. +|...++|.+..
T Consensus 192 aLVPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNT 206 (262)
T ss_pred hhhhHHHHhhhhhhh
Confidence 2 345566666543
No 330
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=79.22 E-value=15 Score=29.12 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=16.1
Q ss_pred hhhHhhHHhcCCCcHHHHHHHHHHHHhcCc
Q 019679 69 HILPCVKELSSDSSQHVRSALATVIMGMAP 98 (337)
Q Consensus 69 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~ 98 (337)
.+++.+..++.|+...||++.-.+|..++.
T Consensus 154 ~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 154 EIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555554
No 331
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=78.59 E-value=57 Score=30.33 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHHhccccChHHHHhhHHHHHHhhc-cCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHH----hhhCCCCccHHHHH
Q 019679 249 ISLLAPVMGSEITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV----ELSEDPDVDVRFFA 323 (337)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~----~l~~d~~~~vr~~a 323 (337)
++.+.+.+.... ...++-.+-.++ ..+...+|-+++.-++.+++..-++...+.+.|.|. .++.|++|-++..|
T Consensus 465 ~~~~~~~l~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~A 543 (559)
T PF14868_consen 465 LSFFIQLLDPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHA 543 (559)
T ss_pred HHHHHHhcChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHH
Confidence 333333333332 334444445555 566667999999999999988766544445555554 46889999999999
Q ss_pred HHHHHHHHHhhh
Q 019679 324 TQALQSKDQVMM 335 (337)
Q Consensus 324 ~~al~~l~~~~~ 335 (337)
.+|++.+++.-.
T Consensus 544 LeAF~~FAe~T~ 555 (559)
T PF14868_consen 544 LEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHhccCC
Confidence 999999987644
No 332
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.04 E-value=43 Score=27.66 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=70.1
Q ss_pred HHHHHHHHHccccc-----hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHH-HHHHHhccccChH
Q 019679 186 KLGALCMQWLKDKV-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTIL-QAISLLAPVMGSE 259 (337)
Q Consensus 186 ~l~~~l~~~l~d~~-----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~-~~l~~l~~~~~~~ 259 (337)
..+|.+++.+.+++ +.++ .++..|+.+++..|..... .+...+....++-+...+ ..+..+.+.+.++
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La-----~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~ 184 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLA-----RILSSYAKGRFRDKDDFLSQVVSYLREAFFPD 184 (262)
T ss_pred HHHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch
Confidence 46788887777777 3444 4567888888665443222 222233322222222222 1223333333332
Q ss_pred HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC
Q 019679 260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED 314 (337)
Q Consensus 260 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d 314 (337)
+...++.++..++....+.+|..+.+.|..+.+....+ ...+.+.|.+ +++..
T Consensus 185 -~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispll-rlL~t 239 (262)
T PF14225_consen 185 -HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLL-RLLQT 239 (262)
T ss_pred -hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHH-HHhCC
Confidence 34567788999999999999999999999998776432 2233444444 45544
No 333
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=75.98 E-value=41 Score=27.35 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=64.4
Q ss_pred cCCChHHHHHHHHHhHHHHHHh----hCHHH-------HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-----
Q 019679 39 LRDNEAEVRIAAAGKVTKICRI----LNPEL-------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----- 102 (337)
Q Consensus 39 ~~d~~~~vR~~a~~~l~~~~~~----~~~~~-------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----- 102 (337)
++|+++.|.+.++.+.+.+-.. +.... ....+-..+.....+.++.||..+++.+..+......
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4566666666666655544332 21110 1112223334456777888888888888765422110
Q ss_pred ---------------------------hhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHH
Q 019679 103 ---------------------------DATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 153 (337)
Q Consensus 103 ---------------------------~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~ 153 (337)
+.....++..++..+.++. +.+-.+++.++..+++.- +. +.+.+++.+.
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R-P~-~~~~Il~~ll 159 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR-PQ-FMSRILPALL 159 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS-GG-GHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-hH-HHHHHHHHHH
Confidence 0011356667777776654 677777888888887752 22 3356777776
Q ss_pred HHhcC
Q 019679 154 ELAED 158 (337)
Q Consensus 154 ~~~~d 158 (337)
++-.+
T Consensus 160 ~~~~~ 164 (239)
T PF11935_consen 160 SFNPN 164 (239)
T ss_dssp HHHHS
T ss_pred hcCcc
Confidence 66543
No 334
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=75.90 E-value=92 Score=31.32 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHH
Q 019679 239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 290 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 290 (337)
..+|.++..++..+....+......++++++. .|+.+.+|....+.+..
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil~---~~~dp~~R~~i~~ml~~ 930 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEILE---NDPDPVIRHKILDMLSQ 930 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhcc---cCcchHHHHHHHHHhhc
Confidence 56888888888887765544433334444333 67778899988888777
No 335
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=75.19 E-value=58 Score=28.71 Aligned_cols=57 Identities=12% Similarity=-0.075 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCc---ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHh
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRI 60 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~ 60 (337)
+|-.-......+..++.......- .......+...++. .+...+..++.+|..+...
T Consensus 127 d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 127 DTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred ChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 344444455556655543332221 12345566666665 6778888888888877653
No 336
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=74.83 E-value=38 Score=26.43 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=72.6
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh-hHHhhHHHHHHHHhcCC-----chHHHHHHHHHhhHhHhhhCh
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~llp~l~~~~~d~-----~~~vr~~~~~~l~~l~~~~~~ 180 (337)
..++..+.+...++-+.||..|..++..+...-.+. ...+ -.+.+......+ +|..- ...+..+.+.+..
T Consensus 6 ~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~---~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 6 QQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSS---SEYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCH---HHHHHHHHHHhcc
Confidence 455566666666667888888888888887332110 0001 112333333221 13222 2334444444444
Q ss_pred hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC-hHHHHhhHHHHHHHhhcCc--chHHHHHHHHHHHHh
Q 019679 181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVLEMINNP--HYLYRMTILQAISLL 252 (337)
Q Consensus 181 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l 252 (337)
..+...++..+.--....+..+...+..+|-.+..... .......++..+...+++. +.++=...+..+..+
T Consensus 82 ~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~L 156 (193)
T PF12612_consen 82 PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFL 156 (193)
T ss_pred HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHH
Confidence 45555566666666666777777777777777765321 1222344555555555532 223333344444444
No 337
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=74.22 E-value=14 Score=23.60 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHH-hChHHHH-hhHHHHHHHhhcC-cchHHHHHHHHHHHHhcccc
Q 019679 203 RDAAANNVKRLAEE-FGPDWAM-QHIVPQVLEMINN-PHYLYRMTILQAISLLAPVM 256 (337)
Q Consensus 203 r~~a~~~l~~~~~~-~~~~~~~-~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~ 256 (337)
.++++-+++.++.. .|...+. ..+++.+.++... +.+.+|-++..+++.++...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 45667777777643 3333332 3577888887764 55888888888888887654
No 338
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=74.08 E-value=66 Score=28.81 Aligned_cols=168 Identities=14% Similarity=0.070 Sum_probs=82.2
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhCh--HHHHhhHHH
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP--DWAMQHIVP 228 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~ 228 (337)
+++..++.+...++..+..++..-.. ....+.+.+.+...++.+ +......++.++..+...-+- -+.....++
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~ 188 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVP 188 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHH
Confidence 55566777888887777777643211 112233444555555432 345566667777766542111 111222445
Q ss_pred HHHHhhcCc--chHHHHHHHH--HHHHhccccChHHHHhhHHHHHHhhccCCC-hhHHHHHHHHHHHHhhhhc-------
Q 019679 229 QVLEMINNP--HYLYRMTILQ--AISLLAPVMGSEITCSQLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVD------- 296 (337)
Q Consensus 229 ~l~~~~~~~--~~~vR~~~~~--~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~------- 296 (337)
.+.+.+... ..+....++. ++-.+............++|.+...+++.. ..|-+-++.+|.++...-.
T Consensus 189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~ 268 (429)
T cd00256 189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKT 268 (429)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhh
Confidence 555555432 2233333333 332222111111122458888888887665 3455556667777765321
Q ss_pred --HHHHHHhhhHHHHhhhCC--CCccHHHH
Q 019679 297 --QSVVEKSIRPCLVELSED--PDVDVRFF 322 (337)
Q Consensus 297 --~~~~~~~i~~~l~~l~~d--~~~~vr~~ 322 (337)
..-+...+.+.+..+... .|+++..-
T Consensus 269 ~~~~mv~~~l~~~l~~L~~rk~~DedL~ed 298 (429)
T cd00256 269 AALQMVQCKVLKTLQSLEQRKYDDEDLTDD 298 (429)
T ss_pred HHHHHHHcChHHHHHHHhcCCCCcHHHHHH
Confidence 112223566666666544 25555433
No 339
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=73.97 E-value=27 Score=24.28 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=32.7
Q ss_pred hHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 123 DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
.-|+.++.+++.+.+..|.. ...+.+...+...++ .+..|..++++...+...++.+.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 44777777777777755421 112233333333333 33477777777777777766544
No 340
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.52 E-value=47 Score=30.03 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=50.2
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhC-C-CCccHHHHHHHHHHHHHHhhhC
Q 019679 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSE-D-PDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~-d-~~~~vr~~a~~al~~l~~~~~~ 336 (337)
..+-.+.+.++..++.|..-|+..|..+.+.+|..+. ...+++-+..+.+ . .+..||..+...|....+.|+.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 5556667777777778888888888888888876532 2345555555443 3 4677888888888888877753
No 341
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.64 E-value=1.4e+02 Score=31.43 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
+...++....+.+...|..|+..+..+....|..+ ..+..+|++.+++.|.+.+|...+...+.++-+.+|.
T Consensus 1542 l~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1542 LNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 33333333444444555555555555544444332 3455555555555555555555555544444444443
No 342
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=71.49 E-value=91 Score=29.32 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=54.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----------HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCccc
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 100 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----------~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 100 (337)
++..+.+.+.....-|+..|+.++.+++..++.. .+..+++.-+.+...|-.|.-.....+++|.+....
T Consensus 571 Vv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~ 650 (1053)
T COG5101 571 VVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEV 650 (1053)
T ss_pred HHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhcc
Confidence 5666778887777889999999999999987654 345556666666777888877788888888877655
Q ss_pred Ch
Q 019679 101 GK 102 (337)
Q Consensus 101 ~~ 102 (337)
++
T Consensus 651 p~ 652 (1053)
T COG5101 651 PK 652 (1053)
T ss_pred ch
Confidence 54
No 343
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=70.89 E-value=72 Score=27.87 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=63.0
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAI 152 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l 152 (337)
....++|.+=..+|.-++.=. .. -...+..+.+-++..++.|...|+..++.++..+|... -...+...+
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~-~~-----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDP-DG-----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred ccccccHHHHHHHHHhhcCCC-cc-----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 344567776666665554433 11 23455677777788888888888888888887777532 233455556
Q ss_pred HHHhc-CCchHHHHHHHHHhhHhHhhhChh
Q 019679 153 VELAE-DRHWRVRLAIIEYIPLLASQLGVG 181 (337)
Q Consensus 153 ~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~ 181 (337)
..+++ ..+.+|+......+..++..+..+
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 66666 556677777777777777766443
No 344
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=70.81 E-value=67 Score=27.49 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHHhHHHHHHhhCH-HHHHHhhhHhhHH-hcCC--------CcHHHHHHHHHHHHhcCcccChhh--HHhhhHH
Q 019679 44 AEVRIAAAGKVTKICRILNP-ELAIQHILPCVKE-LSSD--------SSQHVRSALATVIMGMAPILGKDA--TIEQLLP 111 (337)
Q Consensus 44 ~~vR~~a~~~l~~~~~~~~~-~~~~~~ll~~l~~-l~~d--------~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~ 111 (337)
..+|+..+..+..+.+.... +.+...++|.+.. .+.| .++.|=......+.++.....+.. ..+.+..
T Consensus 41 r~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~ 120 (319)
T PF08767_consen 41 RTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 35677777777777776653 3444455554433 3332 344555555555555555444322 2245555
Q ss_pred HHHHhhcC---CChhHHHHHHHhHHHhHhhhch------hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679 112 IFLSLLKD---EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 112 ~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
....++.+ +.|+.|..-.+-+..+.+..-. ....+.++..+...+++.+..+...+++.+..+......
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 56666654 4699999998888888876421 222366778888888999999999999999988877654
No 345
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=69.23 E-value=42 Score=24.54 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred HccccchHHHHHHHHHHHHHHHHhChHH--H-H-hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-hHHHH-hhHHH
Q 019679 194 WLKDKVYSIRDAAANNVKRLAEEFGPDW--A-M-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITC-SQLLP 267 (337)
Q Consensus 194 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~-~-~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~-~~l~~ 267 (337)
+-...+.+-++.....++.++- ++-. + . -.++..++..+..++....+-++..+..++.--. .++.. ..-+|
T Consensus 25 fq~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~p 102 (173)
T KOG4646|consen 25 FQTTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLP 102 (173)
T ss_pred HHHhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCc
Confidence 3344556667777777777652 3321 1 1 2467888888888888888777766666653222 22222 23467
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhhhh---cHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 268 VVINASKDRVPNIKFNVAKVLQSLIPIV---DQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 268 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~---~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
.+...++++...+-..++.++.-+...= .++.....+...+.......+.+.|..|..++...
T Consensus 103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7788889998888777777776664211 11122233444444444455666677776666554
No 346
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=67.79 E-value=1.2e+02 Score=29.13 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhCh--HH------HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679 185 DKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP--DW------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 255 (337)
Q Consensus 185 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~--~~------~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 255 (337)
+.++...+.++. ..+...-++++.+|..+.-..+. .. -.+..+|.+.+++...+..+-.+++.++..++-.
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 455555445554 35667888888888777543221 11 1345789999999999989999999999998755
Q ss_pred cCh-HHHHhhHHHHHHhhccCCCh------hHHHHHHHHHHHHhh-hhcH--HHHHHhhhHHHHhhhCC-CCccHHHHHH
Q 019679 256 MGS-EITCSQLLPVVINASKDRVP------NIKFNVAKVLQSLIP-IVDQ--SVVEKSIRPCLVELSED-PDVDVRFFAT 324 (337)
Q Consensus 256 ~~~-~~~~~~l~~~l~~~l~d~~~------~vr~~a~~~l~~i~~-~~~~--~~~~~~i~~~l~~l~~d-~~~~vr~~a~ 324 (337)
.-. +..-.+.+|-|...|.+... ++-.+++.+|..+.. .... +.+...=++.|..+... .++.+-..|.
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 443 33445788888888866544 566677888887762 2221 12223334444444333 2445555565
Q ss_pred HHHHHH
Q 019679 325 QALQSK 330 (337)
Q Consensus 325 ~al~~l 330 (337)
..+..+
T Consensus 677 ~vL~~l 682 (717)
T KOG1048|consen 677 SVLDVL 682 (717)
T ss_pred HHHHHH
Confidence 555554
No 347
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=66.94 E-value=1.5e+02 Score=30.09 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh--hCHHHHHHh-hhHhhHHhc
Q 019679 4 SWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI--LNPELAIQH-ILPCVKELS 78 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~--~~~~~~~~~-ll~~l~~l~ 78 (337)
.+.+.+.+.+.+..+..+-+- +......+..+.+++ +..|..|..++..|-.+.+. +..+...+. ++.++.-++
T Consensus 1785 ~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL-HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1785 HPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL-HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred CchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH-hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh
Confidence 445666666666555433221 111223566666777 56899999999999888764 222233222 333444467
Q ss_pred CCCcHHHHHHHHHHHHhcC--cccChhhH---HhhhHHHHHHhhcCC
Q 019679 79 SDSSQHVRSALATVIMGMA--PILGKDAT---IEQLLPIFLSLLKDE 120 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~--~~~~~~~~---~~~l~~~l~~~l~d~ 120 (337)
...++.+|..+++.++++. ...|+... ...+-..+...++|.
T Consensus 1864 ~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1864 LTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS 1910 (2235)
T ss_pred ccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC
Confidence 7888999999999999986 34555432 233444555666663
No 348
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=66.57 E-value=63 Score=25.59 Aligned_cols=158 Identities=14% Similarity=0.171 Sum_probs=75.0
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 156 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~ 156 (337)
.+.=+.|..|..+-..+...... ..+.+...+..+..++.-+.|..++.-+....+..+.+. ++.+...+
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~-----~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l 89 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLP-----DKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELI 89 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHH
Confidence 33445556666655555433321 012333444555656556777777666555433333222 23333333
Q ss_pred cC-CchHHHHHHHHH-hhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhh
Q 019679 157 ED-RHWRVRLAIIEY-IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 234 (337)
Q Consensus 157 ~d-~~~~vr~~~~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 234 (337)
.+ .+|.+-...+.. ++.+.. ..+.+.+.+.++..+++..+|.+|+.+.-.+.+... .+.+...+...+
T Consensus 90 ~~~~~Wd~vD~~~~~i~g~~~~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~----~~~l~~~~~~~~ 159 (208)
T cd07064 90 TTKSWWDTVDSLAKVVGGILLA------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKTD----TDLLFEIILANL 159 (208)
T ss_pred cCCchHHHHHHHHHHHhHHHHh------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC----HHHHHHHHHHhC
Confidence 22 344433332221 122111 112334566666666666666666554333322211 233455555666
Q ss_pred cCcchHHHHHHHHHHHHhcc
Q 019679 235 NNPHYLYRMTILQAISLLAP 254 (337)
Q Consensus 235 ~~~~~~vR~~~~~~l~~l~~ 254 (337)
.|+.+-++.+.-++|..++.
T Consensus 160 ~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 160 GSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 66666777766666666554
No 349
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.38 E-value=93 Score=26.76 Aligned_cols=291 Identities=13% Similarity=0.122 Sum_probs=137.2
Q ss_pred hcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCC--CcHHHHHHHHHHHHhcCcc--cChhh-HHhhhHHH
Q 019679 38 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD--SSQHVRSALATVIMGMAPI--LGKDA-TIEQLLPI 112 (337)
Q Consensus 38 ~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d--~~~~vr~~a~~~l~~l~~~--~~~~~-~~~~l~~~ 112 (337)
+-.+++..+-..++.++..+...- ++.+.-.-+..+.+++.+ ++..+--..+..+..-+-. ...+. ..-.++|.
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQ-PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCC-cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 455666667777776666654432 222222233344444433 2334444444444433211 11111 22356666
Q ss_pred HHHhhcCCC-hhHHHHHHHhHHHhHhh------hc-----hhhHHh-hHHHHHHHHh---cCCchHHHHHHHHHhhHhHh
Q 019679 113 FLSLLKDEF-PDVRLNIISKLDQVNQV------IG-----IDLLSQ-SLLPAIVELA---EDRHWRVRLAIIEYIPLLAS 176 (337)
Q Consensus 113 l~~~l~d~~-~~vr~~a~~~l~~l~~~------~~-----~~~~~~-~llp~l~~~~---~d~~~~vr~~~~~~l~~l~~ 176 (337)
+...+.... ..+-+....++..+.-. +| ...+.+ .++..+.+.+ .|+ .+-......+..++-
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp--~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP--DSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc--cHHHHHHHHHHHHHH
Confidence 665554332 22333444444443211 11 011111 1233333332 232 233333333443332
Q ss_pred h--hChhhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHHh-----hHHHHHHHhhc--CcchHHHHHHH
Q 019679 177 Q--LGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQ-----HIVPQVLEMIN--NPHYLYRMTIL 246 (337)
Q Consensus 177 ~--~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~-----~l~~~l~~~~~--~~~~~vR~~~~ 246 (337)
. +..+....-=+..++.++.| ....+|+.+-.++..+...-|.+.... .-.+.+..++. ..++.+-+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 1 11111111234567788888 555778666666666655556543322 22344444332 22355666666
Q ss_pred HHHHHhccccC---hHHHHhhHHHHHHhhccC-CC-hhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccH
Q 019679 247 QAISLLAPVMG---SEITCSQLLPVVINASKD-RV-PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDV 319 (337)
Q Consensus 247 ~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~-~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~v 319 (337)
.++..++-... ...+....-...++.++. |. ..|+++++..+.++....... .....=...|....+...+..
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tc 431 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETC 431 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccH
Confidence 66666653222 223333444555555533 32 579999999999997654332 111222233334455567778
Q ss_pred HHHHHHHHHHHH
Q 019679 320 RFFATQALQSKD 331 (337)
Q Consensus 320 r~~a~~al~~l~ 331 (337)
+..+.-||..+.
T Consensus 432 e~~akaALRDLG 443 (461)
T KOG4199|consen 432 EAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHhcC
Confidence 888888877664
No 350
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=62.02 E-value=87 Score=25.59 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=51.9
Q ss_pred cchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHH----HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679 29 SDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMA 97 (337)
Q Consensus 29 ~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 97 (337)
..+.|++.....+ +.+-.|.+++..++.+.+.-+.+. ....++|...+..+..+..-+..|...+.++.
T Consensus 123 lylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 123 LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 3577777666655 457789999999999988766652 23557888888888888888888888888765
No 351
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.26 E-value=12 Score=29.49 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=44.4
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMA 97 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 97 (337)
.++|.+...+.+.+.-.|-.|-+.+..+....+.+ .+...++..++..++..+.+|-..+++.+..+.
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLV 183 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 47778877777777777777777777666655543 233445555666667777777777666665554
No 352
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.33 E-value=62 Score=28.02 Aligned_cols=61 Identities=10% Similarity=0.069 Sum_probs=29.1
Q ss_pred HHhhcCcchHHHHHHHHHHHHhccccC-hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 231 LEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 231 ~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
..+.++++..-|..+...++.....-+ ...-...+.+.+..++.|.++.+|..++.+|++-
T Consensus 13 i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 13 IRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 344444444444444333333322222 2223445555555566666666666666665543
No 353
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=60.01 E-value=50 Score=25.25 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcC
Q 019679 83 QHVRSALATVIMGMA 97 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~ 97 (337)
+.||..|++.+..+.
T Consensus 85 ~~VR~yAV~~L~~~s 99 (171)
T cd00872 85 EHVREFAVRCLEKLS 99 (171)
T ss_pred HHHHHHHHHHHHhCC
Confidence 455555555555544
No 354
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.82 E-value=1.6e+02 Score=27.82 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh
Q 019679 127 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 178 (337)
Q Consensus 127 ~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 178 (337)
.|++++..+....+.-.+.+.++..+...+.++...++..+++.+-.+...-
T Consensus 304 vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 304 VAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 3455555555544444456777778888888888888888888887776543
No 355
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=59.40 E-value=1.8e+02 Score=28.42 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred HHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcCC--
Q 019679 49 AAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDE-- 120 (337)
Q Consensus 49 ~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~-- 120 (337)
-+++++.++.-.+.. ..+.+.++.++.+++++++++++..++.++.+++...++... .+.+++.+.+++...
T Consensus 75 Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~ 154 (819)
T KOG1877|consen 75 IAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGD 154 (819)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccc
Confidence 344455555544433 356677888999999999999999999999999865543321 266778787777542
Q ss_pred ---ChhHHHHHHHhHHHhHh
Q 019679 121 ---FPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 121 ---~~~vr~~a~~~l~~l~~ 137 (337)
...+|.+-+++|..+..
T Consensus 155 ~~~~~~lr~agl~gLsa~v~ 174 (819)
T KOG1877|consen 155 DDMKDCLRAAGLQGLSAVVW 174 (819)
T ss_pred hhhhhhccHhhhhhHHHHHH
Confidence 24566666666655443
No 356
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=58.89 E-value=39 Score=23.79 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=16.5
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLA 253 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~ 253 (337)
-.++.++.-+.|++..|...|+..+...+
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c 36 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEAC 36 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34555556666666666666655555544
No 357
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=57.29 E-value=74 Score=23.32 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMA 97 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 97 (337)
+.+..+...+..+|......++..+..++..-.... ....-+|.+....+++...+-..++-.+..+.
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 467778888888888888877766665543222221 22234677777788888777777776666555
No 358
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=56.44 E-value=66 Score=22.42 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=47.2
Q ss_pred HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
...++..+.+.+.......|..++..+..+++..+.+ .+...+.+.+.......++.+|....+.+...
T Consensus 35 a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 35 AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3456677777777667788888988888888776533 34444566666666666677777666665554
No 359
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.87 E-value=67 Score=27.80 Aligned_cols=66 Identities=15% Similarity=-0.006 Sum_probs=49.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhhhhc-HHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
....+..++.++...-|.-++..++.....-+ +..-...+.+.+..|+.|+++++|..++.+|+..
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 34556677788888777777776666654444 3333467888888899999999999999999864
No 360
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=55.80 E-value=56 Score=25.33 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=33.1
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 109 (337)
..+|.+...+.-.++.....+...+..... +++. ..++++..-..| +.||..|++.|..+.. + .....
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~----~AL~LL~~~f~~--~~VR~yAv~~L~~~~d----~-~l~~y 112 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPE----DALELLSPNFPD--PFVRQYAVRRLESLSD----E-ELLFY 112 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHH----HHHHCTSTT-----HHHHHHHHHHHCTS-H----H-HHHHH
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHH----HHHHHHHhhccH--HHHHHHHHHHHHHcCc----h-HHHHH
Confidence 345555555544444444444444433222 2222 123333222223 6677777776655331 2 22344
Q ss_pred HHHHHHhhc
Q 019679 110 LPIFLSLLK 118 (337)
Q Consensus 110 ~~~l~~~l~ 118 (337)
+|.+.+.++
T Consensus 113 LpQLVQaLr 121 (184)
T PF00613_consen 113 LPQLVQALR 121 (184)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHhe
Confidence 555555554
No 361
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=54.87 E-value=52 Score=22.56 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=37.0
Q ss_pred HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhh
Q 019679 260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS 312 (337)
Q Consensus 260 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~ 312 (337)
.+.+.++.++...+..-.++||.-+.+.|.-+.+.++.. ....++++.+..++
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 355667777777788888888888888888888877765 22345565555554
No 362
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=54.62 E-value=88 Score=23.36 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhcC
Q 019679 83 QHVRSALATVIMGMA 97 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~ 97 (337)
+.||..|++.+..+.
T Consensus 85 ~~vr~yAv~~L~~~~ 99 (152)
T cd00864 85 PVVRQYAVRVLESAS 99 (152)
T ss_pred HHHHHHHHHHHHhCC
Confidence 566666666665544
No 363
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=54.46 E-value=96 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLL 174 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l 174 (337)
.++.+...+..++..+|..+++.|..+
T Consensus 159 ~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 159 SVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 334444444444444555544444443
No 364
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=53.21 E-value=72 Score=21.89 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcC
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINN 236 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~ 236 (337)
+.+.++..+...+..-.+.||..++..|.-+.+.++.... ..++++.+..++..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 3455666666777778888888888888888887765522 23466666666553
No 365
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.83 E-value=1.6e+02 Score=25.21 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=38.1
Q ss_pred HHHHHHHHccccchH-HHHHHHHHHHHHHHHhChHH--H-HhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679 187 LGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDW--A-MQHIVPQVLEMINNPHYLYRMTILQAISLL 252 (337)
Q Consensus 187 l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~--~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l 252 (337)
++..+.+.++..+++ .-..|+.-++++.+..+.-. + .-..-..+++++++++.++|..|+.++..+
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 556666666665554 34455666666665542210 0 122334566777777777777777766654
No 366
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=50.31 E-value=3.5e+02 Score=28.94 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=74.5
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH-HHh
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI-TCS 263 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-~~~ 263 (337)
+.++.+.-.++..+++.|+.-+......+...++ ....+.++..++..+.+.+...-.+|+..+..++...+... ...
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4455666677888999999999988888888774 34566788877777755555455688888888876433221 011
Q ss_pred hHHHHHHhhccCCC-hhHHHHHHHHHHHHhhhhcH--HHHHHhhhHHHHhhhCCCCccHHH
Q 019679 264 QLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRF 321 (337)
Q Consensus 264 ~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~ 321 (337)
.++.-++.++.+-+ ..+|+ ....|..++-.-+. ..+.+.+.-.+.+.+..++...+.
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 22223334444433 35554 45555555421111 123344555555555555554433
No 367
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=50.25 E-value=64 Score=22.19 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhc--CCChHHHHHHHHHhHHHHHHhhCHH
Q 019679 7 VRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILNPE 64 (337)
Q Consensus 7 vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~--~d~~~~vR~~a~~~l~~~~~~~~~~ 64 (337)
.|...++.++.++-.... ......=+|.+...+ .|.+|-+|+-|+.++..+++.....
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 467778888887743322 111112355555555 4578999999999999998876554
No 368
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=49.42 E-value=1.1e+02 Score=23.05 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCc--chHHHHHHHHHHHHhcccc---ChHHHHhhHHHHHHhh
Q 019679 201 SIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVM---GSEITCSQLLPVVINA 272 (337)
Q Consensus 201 ~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~ 272 (337)
+.-.-++.++..+.+. |. +.....++..+..+.+.+ +..+-+.++..+..+...- ......+--++.+...
T Consensus 32 ~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHH
Confidence 4444445555555442 21 223344555555555533 2456666777777765422 2222334457778888
Q ss_pred ccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679 273 SKDRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 273 l~d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
+.+.+.+++.+++..+.++....+..
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 88899999999998888887666543
No 369
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=49.28 E-value=1.2e+02 Score=23.25 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhccc-cChHHH--HhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 239 YLYRMTILQAISLLAPV-MGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~-~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
...-..++.|+..+... .|.+.. .+..++.+...+..++..+|..++..|..++
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44555667777776543 333322 2456777778888888888888888877664
No 370
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=49.08 E-value=1.5e+02 Score=24.45 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=44.7
Q ss_pred hHHHHHHHHhcC-CchHHHHHHHHHhhHhHhhhChhh----HHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679 147 SLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 214 (337)
Q Consensus 147 ~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 214 (337)
.+.|.+....+. +.+.+|-+++..++.+.+.-+.+. ...+++|.+++.++-.+.--+..|.-.+.++.
T Consensus 95 yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 95 YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 477777655544 346799999999999998655543 22468899988888777777777766666654
No 371
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.10 E-value=1.6e+02 Score=24.42 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=68.3
Q ss_pred hhHHHHHHhhcCCC----hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH
Q 019679 108 QLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 183 (337)
Q Consensus 108 ~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 183 (337)
..+|.+..-+.+++ ..--..++..+..+++..+...+ -..+..+.+.+......-....+..+.+.+.++ +
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L----a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-~ 185 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL----ARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-H 185 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH----HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-h
Confidence 45666766666655 12333555666666655443322 222233333333112222223333444444332 2
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH-HHHhhHHHHHHHhhcCcchHH
Q 019679 184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLY 241 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~v 241 (337)
..+++-.+++++.....++|..+...|..+....+-. .....++..+..+++.+.|..
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~e 244 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWME 244 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHH
Confidence 3456667777888777888888888887776654321 123346666777777666553
No 372
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=47.36 E-value=2.9e+02 Score=27.25 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh------Ch----hhHHHHHHHHHHHHc
Q 019679 126 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL------GV----GFFDDKLGALCMQWL 195 (337)
Q Consensus 126 ~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~------~~----~~~~~~l~~~l~~~l 195 (337)
...+..+..+....+.......++..+.-.++-+.-+-+..-+..++.+...+ +. ....++++.++-.++
T Consensus 120 ~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll 199 (802)
T PF13764_consen 120 EVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLL 199 (802)
T ss_pred HHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHH
Q ss_pred cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhc--
Q 019679 196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS-- 273 (337)
Q Consensus 196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-- 273 (337)
.+.+..-..............-.......-++..+...+...+.+++...++.|+.++ +|.+...+.++.++...+
T Consensus 200 ~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~~F~p~l~f 277 (802)
T PF13764_consen 200 SEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVEHFKPYLDF 277 (802)
T ss_pred HHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHHHHHHhcCh
Q ss_pred ---cCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh
Q 019679 274 ---KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 310 (337)
Q Consensus 274 ---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~ 310 (337)
.+....--+..+.++..++..++++..-..+...+..
T Consensus 278 ~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~ 317 (802)
T PF13764_consen 278 DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE 317 (802)
T ss_pred hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
No 373
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=47.01 E-value=1.3e+02 Score=29.59 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCccc--chHH---------------HHHHhc--CCChHHHHHHHHHhHHHHHHhhCHH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRS--DVVP---------------AYVRLL--RDNEAEVRIAAAGKVTKICRILNPE 64 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~--~l~~---------------~l~~~~--~d~~~~vR~~a~~~l~~~~~~~~~~ 64 (337)
-|.-|+.+.+.+++....+-....|+ +-+. .-.+++ +=+|+.||..|+.+|. .+.++
T Consensus 566 lW~~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~----~Lsdd 641 (1076)
T KOG0904|consen 566 LWHLRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLE----QLSDD 641 (1076)
T ss_pred HHHHHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHH----hcChh
Confidence 47778888777665554443222222 1111 122333 2257899999999884 56777
Q ss_pred HHHHhhhHhhHHhcCCC---cHHHHHHHHHHHH
Q 019679 65 LAIQHILPCVKELSSDS---SQHVRSALATVIM 94 (337)
Q Consensus 65 ~~~~~ll~~l~~l~~d~---~~~vr~~a~~~l~ 94 (337)
.+.+++++++..+--.+ +.-+|...-++|+
T Consensus 642 ~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~ 674 (1076)
T KOG0904|consen 642 DLLQYLLQLVQALKYEPYLDSALVRFLLKRALR 674 (1076)
T ss_pred HHHHHHHHHHHHHhccchhHhHHHHHHHHHHhh
Confidence 77788888776654332 3344444444443
No 374
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=46.89 E-value=40 Score=19.85 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=19.5
Q ss_pred HHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 300 VEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 300 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
+.+.+...|.+-...-+++.|...+++|-.+
T Consensus 16 Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 16 FPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 4455666665555555677777777776544
No 375
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.63 E-value=3e+02 Score=27.15 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=71.9
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh
Q 019679 25 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 104 (337)
Q Consensus 25 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 104 (337)
+...+..+-.+.+.+........-.++..+..+.+..+-..+....+=.+.....+.+--.|-+.......-+....+-.
T Consensus 19 e~s~~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~ 98 (970)
T KOG1988|consen 19 ENSVNAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVL 98 (970)
T ss_pred ccchhHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhh
Confidence 33334455566666654444334444444555544444444444444445556667777788888888876665555443
Q ss_pred HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch
Q 019679 105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 141 (337)
Q Consensus 105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 141 (337)
...+++..+.......||.-|..++..++.+...+++
T Consensus 99 n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE 135 (970)
T KOG1988|consen 99 NGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE 135 (970)
T ss_pred hhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc
Confidence 4456666666666677888898888888888877664
No 376
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=45.69 E-value=1.3e+02 Score=22.71 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=47.2
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--HhhHHHHHHH-hhcCc--chHHHHHHHHHHHHhcc
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLE-MINNP--HYLYRMTILQAISLLAP 254 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~-~~~~~--~~~vR~~~~~~l~~l~~ 254 (337)
+++.+.+.+.+..++..+-..+++.+..+...++...- .+.+++.+.. .+..+ +.+.|..+++.+..++.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 45667777766666688888888888888877754321 3345565555 44433 35688889888888775
No 377
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=43.93 E-value=2.8e+02 Score=26.03 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=34.2
Q ss_pred ccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 255 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
.+........++.++....-..++.||.+|.++|..++...+
T Consensus 462 cL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 462 CLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred cCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 333343457889999999999999999999999999998774
No 378
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.33 E-value=76 Score=22.36 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=24.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~ 60 (337)
.++.+.+.+.|++++|...|+..|...+..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 467777888888889988888888877664
No 379
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=43.20 E-value=1.9e+02 Score=23.80 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHhhHhHhhhChhhH----HHHHHHHHHHHccccchHHHHHHHHHHHH
Q 019679 159 RHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKR 212 (337)
Q Consensus 159 ~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 212 (337)
+.+..|-.++..++.+.+.-+.+.. ..+++|.+++.++..+..-+..|...+..
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqK 194 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQK 194 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445566666655555555444431 12455555555555554444444444443
No 380
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.02 E-value=2.6e+02 Score=25.50 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=61.1
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--
Q 019679 27 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-- 102 (337)
Q Consensus 27 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-- 102 (337)
.+..++..+.+.+.-.+-+.-...+..|.++.-....+. ....++..+.++..-..+..|.+.+..+-++.---|-
T Consensus 301 rrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 301 RRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 345678888888866666665555555555544332221 2233666777788888899999999999888754442
Q ss_pred hhHHhhhHHHHHHhhcCC
Q 019679 103 DATIEQLLPIFLSLLKDE 120 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~ 120 (337)
.-....++|.+..++.+.
T Consensus 381 KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHhhccchHHHHHHhCCc
Confidence 223356778888777653
No 381
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.95 E-value=3.4e+02 Score=26.78 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=90.0
Q ss_pred HhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHH
Q 019679 72 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 151 (337)
Q Consensus 72 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~ 151 (337)
..+.+.+....+.-.-.+...+..+-+..+........+--+...+.+-+...|-..++...+-.+...+-.....++..
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrr 106 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRR 106 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhhe
Confidence 33444444333333333444444444434433333444444555667778888988888888766555432222334444
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHH--HHHHHHHHHHHhChHHHHhhHHH
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDA--AANNVKRLAEEFGPDWAMQHIVP 228 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~--a~~~l~~~~~~~~~~~~~~~l~~ 228 (337)
+.......++.-|..++..++.+....++..-.+.++.. .+ +..+-++|.+ |..++....+.+ .-.+..
T Consensus 107 i~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhlIr~---sl~S~helE~eaa~~Aaa~Faa~sk~F-----A~si~g 178 (970)
T KOG1988|consen 107 IFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHLIRI---SLDSHHELEVEAAEFAAACFAAQSKDF-----ACSICG 178 (970)
T ss_pred eEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHHHHH---HhcCccchhhHHHHHHHhhhhhhhhhh-----HHHHHH
Confidence 444456677889999999999888877654322333322 33 2234455443 222333333222 223555
Q ss_pred HHHHhhcCc--chHHHHHHHHHHHHhc
Q 019679 229 QVLEMINNP--HYLYRMTILQAISLLA 253 (337)
Q Consensus 229 ~l~~~~~~~--~~~vR~~~~~~l~~l~ 253 (337)
.+.+++... ....|...+..+..+.
T Consensus 179 kis~mIef~d~~~~mkL~li~Vfs~M~ 205 (970)
T KOG1988|consen 179 KISDMIEFLDLPVPMKLSLIPVFSHMH 205 (970)
T ss_pred HHHHHhhcccCCCCcchhHhHHHHHhc
Confidence 555555432 2445555555555553
No 382
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=42.68 E-value=1.8e+02 Score=23.35 Aligned_cols=88 Identities=8% Similarity=0.098 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCC
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR 276 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 276 (337)
.+|.|-...+..+.. .. .-+.+++......++.+ |.-|.+.+..+...-+ +.+...+++++-..++|.
T Consensus 98 nnW~vvD~la~~~V~-~~------~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~----~~~~~~if~i~E~~l~d~ 166 (222)
T COG4912 98 NNWAVVDTLANHFVG-IP------LWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKK----TLDLLEIFEIIELLLGDK 166 (222)
T ss_pred ccHHHHHHHHHHhhc-cc------cCHHHHHHHHhccccchHHHHHHHHHHHHHHhcC----ccchhHHHHHHHHHccCh
Confidence 456666665555543 11 12345555544444444 5555555555544332 234447899999999999
Q ss_pred ChhHHHHHHHHHHHHhhhhc
Q 019679 277 VPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 277 ~~~vr~~a~~~l~~i~~~~~ 296 (337)
..-||.+.-.+|.+++++..
T Consensus 167 e~fV~KAigWaLrq~~k~~~ 186 (222)
T COG4912 167 EFFVQKAIGWALRQIGKHSN 186 (222)
T ss_pred HHHHHHHHHHHHHHHHhhch
Confidence 99999999999999998443
No 383
>COG2733 Predicted membrane protein [Function unknown]
Probab=42.54 E-value=2.4e+02 Score=24.86 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=20.6
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhh
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIV 295 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 295 (337)
..+..-..+++..+|...++++..+++.+
T Consensus 304 ~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 304 EWLKEDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHH
Confidence 34445557777788888888888887766
No 384
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=42.05 E-value=3.7e+02 Score=27.44 Aligned_cols=165 Identities=10% Similarity=0.017 Sum_probs=89.2
Q ss_pred hHHHHHHHhHHHhHhhhchhhHHh---hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc
Q 019679 123 DVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD 197 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~~~~~~---~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d 197 (337)
.|....+.....+.+.+|.+.+.+ ...+.+..+....+-.+|...++.+....-.+|... +...++-.++..+++
T Consensus 78 GVH~KTLEvY~yIFe~Ig~eTL~~e~n~w~~Gl~pf~~~~si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~ 157 (1618)
T COG5221 78 GVHNKTLEVYSYIFERIGRETLLKEFNFWTLGLFPFSAHCSILVVSSFIDLIERYIVPLGKDVRSYCTSILISLLPGMEF 157 (1618)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHhhhhhhhcchhhhhhhhhhHhHHHHHHHHHhheeecCccHHHHHHHHHHHhCCCccc
Confidence 566667777777777777665532 345566666677777788888888777766666432 222233333344455
Q ss_pred cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH-hhcCcchHHHHHHHHHHHHhccccChHHH--------HhhHHHH
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEIT--------CSQLLPV 268 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--------~~~l~~~ 268 (337)
++.+--...+..+..+.+.+..+.+ ....+.. ++++ .+.|..++.++.+-......... ..-++-.
T Consensus 158 es~e~~~l~~hLi~tl~k~L~d~~~---fw~~~w~ill~~--~~~R~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~ 232 (1618)
T COG5221 158 ESGEYYSLRAHLIITLFKSLIDPDV---FWSSMWGILLND--ERLRTGVLNSLMREENNDSHMDWSERLILPHAGLMVRA 232 (1618)
T ss_pred cccchHHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC--ccccchHHHHHHHHhcCcchhchhhhccCCCcchhHHH
Confidence 5544444445555555555533211 1222222 2222 33555555555553322211100 1135566
Q ss_pred HHhhccCCChhHHHHHHHHHHHHh
Q 019679 269 VINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 269 l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
+..++.|++.-|+++...+|-...
T Consensus 233 l~a~l~dndiLV~R~~lDlLl~~f 256 (1618)
T COG5221 233 LCAGLGDNDILVVRNCLDLLLFVF 256 (1618)
T ss_pred HHhhcCCCceeeehhHHHHHHHHc
Confidence 777778877777777776665543
No 385
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=41.70 E-value=30 Score=16.61 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=9.0
Q ss_pred hHHHHHHHhhcCcchHHHH
Q 019679 225 HIVPQVLEMINNPHYLYRM 243 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~ 243 (337)
.++|.+.+.+++++-.+|.
T Consensus 3 ~IVpyi~~~L~N~~LAl~l 21 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRL 21 (24)
T ss_dssp THHHHHHHTT--HHHHHHH
T ss_pred cchhHHHhccCCHHHHHHH
Confidence 3555555555555544444
No 386
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.13 E-value=2.8e+02 Score=25.27 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=64.3
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL 266 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 266 (337)
+..++-++..+..+.+--.-+++|..++.+-+.+ .......+++.+......+|..++..+..+-- ....|...++
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee--~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~--rs~~FR~lii 83 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE--VRLSSQTLMELMRHNHSQVRYLTLQIIDELFM--RSKLFRTLII 83 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH--HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 4445555556666666556666777776654333 44456667777777778888888877776531 1222333333
Q ss_pred HHHHhhc-----cCCC----------hhHHHHHHHHHHHHhhhhcHH
Q 019679 267 PVVINAS-----KDRV----------PNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 267 ~~l~~~l-----~d~~----------~~vr~~a~~~l~~i~~~~~~~ 298 (337)
.-+..+| .+++ ..+|..|+..+..+-..+|..
T Consensus 84 ~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 84 ENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred hCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3222222 2222 268899999999888877754
No 387
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=40.78 E-value=1.1e+02 Score=20.57 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhhhhcH--HHHHHhhhHHHHhh--------hCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 278 PNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVEL--------SEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 278 ~~vr~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~l--------~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
..+|.++-..++..+..+.. +.+.+.++.-+.+. .-|+++++.....+-+..+++.||.
T Consensus 10 ~vlrs~vs~~~gv~a~a~nk~~DpIqqlFldKvREy~~ks~~Gklvds~pe~e~eLk~el~rla~qfg~ 78 (105)
T KOG4634|consen 10 SVLRSAVSVHLGVTATAFNKELDPIQQLFLDKVREYKKKSPAGKLVDSDPEYEQELKEELFRLAQQFGL 78 (105)
T ss_pred HHHHHHHHHhhchhhhHHHhhhChHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 34555554444444433322 12334444444443 2377899999999999999999884
No 388
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=40.27 E-value=1.1e+02 Score=20.44 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 240 LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 240 ~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
..|-+++..++++...+.-. .+.+.++..|.....| ...|+..+-++|+.+-+....
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 34566666666666655443 1334444444444554 456777777777776555443
No 389
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=40.08 E-value=1.7e+02 Score=22.42 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=18.7
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 140 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 140 (337)
.+-|.+..++.. .+++....+-++.+++.+.
T Consensus 3 eikplLIsCL~~--q~~k~s~~KiL~~iVs~Va 33 (174)
T PF04510_consen 3 EIKPLLISCLTM--QETKESDFKILRRIVSHVA 33 (174)
T ss_pred chHHHHHHHHHh--hcccHhHHHHHHHHHHHHH
Confidence 466777777755 3344555666666665544
No 390
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=39.55 E-value=1.7e+02 Score=22.17 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=46.0
Q ss_pred HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
|..++..++..-.. +..+.+.+...|..+...... ....+.-.+-|...+.+++++++..+...+..+-...+
T Consensus 59 FI~Kia~~Vn~~~~--d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 59 FIKKIASYVNSSAM--DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHccccc--cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 44555555553222 467888888888888754322 12223455666666777888898888888877765543
No 391
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=39.07 E-value=2.5e+02 Score=24.14 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 019679 202 IRDAAANNVKRLAE 215 (337)
Q Consensus 202 vr~~a~~~l~~~~~ 215 (337)
+|......+-.++.
T Consensus 122 aR~~Vy~~lv~la~ 135 (378)
T KOG2753|consen 122 ARYQVYMSLVTLAA 135 (378)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 392
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=38.89 E-value=4.9e+02 Score=27.40 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=86.7
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH--
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-- 184 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-- 184 (337)
...+|...-.+.|..+..|..+...+..+......+.+ +-+...+.....-.+..-|...+...+......|.+.-.
T Consensus 1001 ~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~~-~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~ 1079 (1364)
T KOG1823|consen 1001 NFFIALVLVKINDDEPVCREMASMLIKVLYDKEDNELF-NLLERLLHEWVGVHKRHKRFILVGATGKAEESIGFELTIQL 1079 (1364)
T ss_pred ccchhhcccccccchHHHHHHHHHHHHHHhCHhhhHHH-hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556666677888899999888887776655443332 333333333222111122222244444444444433211
Q ss_pred -------------HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679 185 -------------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISL 251 (337)
Q Consensus 185 -------------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~ 251 (337)
+..-|..-+...+..+.+............+..| ...+...+..++..+..++|.++...++.
T Consensus 1080 ~~~~~~lek~~~~~~s~~~~~~~~~~~~~~~lfs~lt~~t~~ikk~~----f~ki~~~v~~~~l~~~~~v~~s~~~lf~~ 1155 (1364)
T KOG1823|consen 1080 FVLLSVLEKEIIVEVSDPIEAETEEVLFDKVLFSWLTLVTENIKKGG----FSKIWSRVVGLLLMPHSWVRLSRAQLFGF 1155 (1364)
T ss_pred hhccceeeeecccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 1122222222333333333333333322222222 34577777788888888999999999998
Q ss_pred hccccChH-HHHhhHHHHHHhhccC
Q 019679 252 LAPVMGSE-ITCSQLLPVVINASKD 275 (337)
Q Consensus 252 l~~~~~~~-~~~~~l~~~l~~~l~d 275 (337)
+....+.. .....+.+.++.-+.-
T Consensus 1156 l~a~~~~~e~~~~~i~~~ll~~L~~ 1180 (1364)
T KOG1823|consen 1156 LFAISDVSELRLRTIIPLLLAHLDY 1180 (1364)
T ss_pred HHhcccHHHHHHHHhHHHHHHhCCC
Confidence 87666544 3344677777766654
No 393
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=37.78 E-value=2.7e+02 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILN 62 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~ 62 (337)
+..+.+.++...+.+...++..|..++...+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~ 88 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDG 88 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCC
Confidence 4555556666666666666677776666444
No 394
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=35.87 E-value=5e+02 Score=26.59 Aligned_cols=163 Identities=16% Similarity=0.170 Sum_probs=90.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
.+..+..+-.+ +..+|.+++..|..-...........|.+..+...+++.-..+|....-+++.+.. ++......++
T Consensus 75 ~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~~--~kai~a~~vL 151 (1129)
T KOG1926|consen 75 KLDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVLR--PKAIEATSVL 151 (1129)
T ss_pred HHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhc--cccchHHHHH
Confidence 44455555444 88999999988887777666666778888888888888888999999999988773 2222122233
Q ss_pred HHHHHhhc---C--CChhHHHHHHHhHHHhHhhh-----------chhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679 111 PIFLSLLK---D--EFPDVRLNIISKLDQVNQVI-----------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 174 (337)
Q Consensus 111 ~~l~~~l~---d--~~~~vr~~a~~~l~~l~~~~-----------~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 174 (337)
..+..... + ...+-|..++-.+-.+.... +.....+.+-..+..+...++ .....++..+-..
T Consensus 152 ~~i~~~~~~~~~~~~gkd~k~~~~G~Lf~l~si~~s~~l~~~~s~k~~e~~~~f~~~l~~LA~kk~-~L~~~c~~il~~s 230 (1129)
T KOG1926|consen 152 STILQVLLVSSAKMKGKDEKLVAFGNLFGLESILQSGILKEASSVKKDEKFKRFTDLLLQLALKKN-WLQEPCVEILLLS 230 (1129)
T ss_pred HHHHHHHhhhcccccCccccchhhhhHHHHHHHHhhhHHHhhhhccccHHHHHHHHHHHHHhhhHH-HHHhHHHHHHHHH
Confidence 33332221 1 11122222221111111110 111112233333334443344 3566666666666
Q ss_pred HhhhChhhHHHHHHHHHHHHccc
Q 019679 175 ASQLGVGFFDDKLGALCMQWLKD 197 (337)
Q Consensus 175 ~~~~~~~~~~~~l~~~l~~~l~d 197 (337)
.+..+...+..+.++.+...+.-
T Consensus 231 v~qlp~~~~~~~~~ea~~~~l~k 253 (1129)
T KOG1926|consen 231 VKQLPASPFEEHVLEALLPLLTK 253 (1129)
T ss_pred HHhccchHHHHHHHHhhhhhcCh
Confidence 66677777777777777666553
No 395
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=35.67 E-value=1.3e+02 Score=20.20 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhc--HHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 281 KFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 281 r~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
|.+++-.|+.+...++ -......++..|....+| ...|+..+.++|+.+.+
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 4445555555544432 011223444445555554 33455555555555443
No 396
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=34.89 E-value=90 Score=17.74 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=19.8
Q ss_pred HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679 106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 138 (337)
.+++-.++.+++...++..|...+..++.+.+.
T Consensus 5 ~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 5 LEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 345666777777776677777777777766654
No 397
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=34.46 E-value=1.6e+02 Score=21.50 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 019679 6 RVRYMVANQLYELC 19 (337)
Q Consensus 6 ~vR~~~~~~l~~~~ 19 (337)
++||++.+++..+|
T Consensus 70 RIRRai~~al~nlA 83 (134)
T PF08664_consen 70 RIRRAIKQALTNLA 83 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 398
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.77 E-value=1.7e+02 Score=27.93 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=52.7
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
..+.+.+..+.+-.+-.|+.-++..+...++.++-+.+ .+++|.+-.+|.+...+-+...+..|-++...||..
T Consensus 675 ~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~-t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~ 748 (825)
T KOG0267|consen 675 SDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLC-TQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTV 748 (825)
T ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHH-HHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhh
Confidence 34445555555555566777888888888888777653 568888888888887777777777777777777754
No 399
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=32.16 E-value=2.4e+02 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=8.9
Q ss_pred hhHHHHHHHhHHHhHh
Q 019679 122 PDVRLNIISKLDQVNQ 137 (337)
Q Consensus 122 ~~vr~~a~~~l~~l~~ 137 (337)
+.||..|++.+.....
T Consensus 90 ~~Vr~yAV~~L~~~~d 105 (184)
T smart00145 90 PFVRAYAVERLESASD 105 (184)
T ss_pred HHHHHHHHHHHHhCCH
Confidence 5555555555555443
No 400
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=31.79 E-value=4.2e+02 Score=24.55 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=51.1
Q ss_pred HHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh
Q 019679 154 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 233 (337)
Q Consensus 154 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 233 (337)
-+..|+-..||...+..+-.+...-+.. ...++..+.+-|.|....|-..|-..|-++-....+ ....++..+..+
T Consensus 198 ~ls~d~i~~Vk~qvv~~VydLL~a~peq--e~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~--mk~VV~d~Iedf 273 (821)
T COG5593 198 VLSHDPIQYVKKQVVRLVYDLLEARPEQ--EVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPG--MKEVVLDGIEDF 273 (821)
T ss_pred HhccchHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCc--hhHHHHhhhhHh
Confidence 3344555566666666655555443332 234778888888888777777776666666544322 123345555555
Q ss_pred hcCcc--hHHHHHHHHHHHH
Q 019679 234 INNPH--YLYRMTILQAISL 251 (337)
Q Consensus 234 ~~~~~--~~vR~~~~~~l~~ 251 (337)
+-.|+ ++.|.-++..+.+
T Consensus 274 ~f~pn~~~~s~yyalitLnq 293 (821)
T COG5593 274 YFKPNDLFRSRYYALITLNQ 293 (821)
T ss_pred eeccccccceeeeeehhhHH
Confidence 54333 3333334434433
No 401
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=31.16 E-value=2.1e+02 Score=27.37 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=53.2
Q ss_pred CHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcC--CChhHHHHHHHhHHHhHhh
Q 019679 62 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 62 ~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~ 138 (337)
+...+.+.++..++.+++++--.--+...+.+.+++..-..+.-...++..+..-++| +.++.+...++++..++..
T Consensus 920 GIAVvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN~ 998 (1253)
T KOG3534|consen 920 GIAVVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGNA 998 (1253)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhH
Confidence 3334456677788888888877777778888888887544343345566666666665 4688888888888777654
No 402
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.70 E-value=1.7e+02 Score=19.54 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=36.0
Q ss_pred HHHHHHHHHHccccc--hHHHHHHHHHHHHHHHHh-ChHHHHhhHHHHHHHhhcCcc--hHHHHHH
Q 019679 185 DKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEF-GPDWAMQHIVPQVLEMINNPH--YLYRMTI 245 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~~~--~~vR~~~ 245 (337)
.+.+..+.+...|+. .+||.+|-.+...+.+.- ++..-....+..+-+.-+|++ .+.|...
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~i 81 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLI 81 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 445666666667754 378888888777665421 111123356667777777876 3445433
No 403
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=29.97 E-value=2.5e+02 Score=21.37 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=7.7
Q ss_pred hhHHHHHHHhHHHhH
Q 019679 122 PDVRLNIISKLDQVN 136 (337)
Q Consensus 122 ~~vr~~a~~~l~~l~ 136 (337)
+.||..|++.|..+.
T Consensus 92 ~~VR~yAV~~L~~~s 106 (166)
T cd00870 92 PVVRKYAVSRLKLAS 106 (166)
T ss_pred HHHHHHHHHHHHhCC
Confidence 445555555555544
No 404
>PF14961 BROMI: Broad-minded protein
Probab=29.25 E-value=3.4e+02 Score=28.07 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHHHhhc-CcchHHHHHHHHHHHHhc--cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 228 PQVLEMIN-NPHYLYRMTILQAISLLA--PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 228 ~~l~~~~~-~~~~~vR~~~~~~l~~l~--~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
..+.+.+. +....+|..|++.+.... .....+ ..+.+-..+...|.|+++.+...+.+..+...+..+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E-~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCE-SWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccc-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 33444443 344678888877776653 222222 456677777788888888888888877777655443
No 405
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.95 E-value=5.1e+02 Score=25.05 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=46.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH
Q 019679 196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 260 (337)
Q Consensus 196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~ 260 (337)
+-.+..|+..++..+....+.++-+. ...++|.+-.++.+.-.+.+...+..+-.+...+|...
T Consensus 686 kl~D~sV~ADvL~Iltek~eiLtLDl-~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I 749 (825)
T KOG0267|consen 686 KLADNSVQADVLNILTEKIEILTLDL-CTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVI 749 (825)
T ss_pred HhhhhhHHHHHHHHHhhhhhHhhHHH-HHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhh
Confidence 33445677777888888888776664 45688888888888777777777777777777777653
No 406
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.60 E-value=5.5e+02 Score=24.87 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=51.8
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH---HHhhHHHHHHhhc-cCCChhHHHHHHHHHHHHhhhhcHH-
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS- 298 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~- 298 (337)
..++..+.+++..+. .|..++..++.+...-+.-. ....+++.++++| .|.+..+-..|+.+|..+..++...
T Consensus 69 K~~~~~l~~~~~~~~--~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVKPS--YRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcCch--hHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 346667777777654 67777777777765433221 2234555555554 6777788888888888887776543
Q ss_pred -HHHHhhhHHHHhh
Q 019679 299 -VVEKSIRPCLVEL 311 (337)
Q Consensus 299 -~~~~~i~~~l~~l 311 (337)
.+...++..+..+
T Consensus 147 ~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 147 GPHLPDLFNIFGRL 160 (668)
T ss_pred hHHHHHHHHHHHHH
Confidence 2233444444444
No 407
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=28.28 E-value=3.9e+02 Score=23.07 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=7.5
Q ss_pred hhHHHHHHHhhcCcc
Q 019679 224 QHIVPQVLEMINNPH 238 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~ 238 (337)
+..+..+.+..+||+
T Consensus 205 edA~rcV~~av~dP~ 219 (378)
T KOG2753|consen 205 EDAMRCVVEAVKDPK 219 (378)
T ss_pred HHHHHHHHHHHcCCc
Confidence 344555555555543
No 408
>PF01816 LRV: Leucine rich repeat variant; InterPro: IPR004830 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This signature describes a leucine-rich repeat variant (LRV), which has a novel repetitive structural motif consisting of alternating alpha- and 3(10)-helices arranged in a right-handed superhelix, with the absence of the beta-sheets present in other LRRs [].; PDB: 1LRV_A.
Probab=28.08 E-value=51 Score=16.16 Aligned_cols=10 Identities=50% Similarity=0.913 Sum_probs=5.6
Q ss_pred hHHHHHHHHH
Q 019679 5 WRVRYMVANQ 14 (337)
Q Consensus 5 ~~vR~~~~~~ 14 (337)
|.||..++.-
T Consensus 1 ~~VR~avA~~ 10 (26)
T PF01816_consen 1 WEVRAAVARR 10 (26)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 5566665544
No 409
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=27.56 E-value=2.5e+02 Score=20.64 Aligned_cols=94 Identities=21% Similarity=0.171 Sum_probs=54.2
Q ss_pred HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc---C--hHHHHhhH---
Q 019679 194 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---G--SEITCSQL--- 265 (337)
Q Consensus 194 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---~--~~~~~~~l--- 265 (337)
.|+-...++.++|--++.. . ...+.+.+.|++-+.+++...|...+.++..+++.. + ...|...+
T Consensus 16 ~L~aS~qSi~kaa~fAlk~--~-----~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~~d 88 (139)
T PF12243_consen 16 RLNASQQSIQKAAQFALKN--R-----DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQRD 88 (139)
T ss_pred HcchhHHHHHHHHHHHHHc--c-----ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 3444445556666555543 1 123468899999999999999999988888886433 2 22232222
Q ss_pred HHHHHh-hccCCCh--hHHHHHHHHHHHHhhh
Q 019679 266 LPVVIN-ASKDRVP--NIKFNVAKVLQSLIPI 294 (337)
Q Consensus 266 ~~~l~~-~l~d~~~--~vr~~a~~~l~~i~~~ 294 (337)
+|-++. .+-+... .-+..+-+.|..+.+.
T Consensus 89 L~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k 120 (139)
T PF12243_consen 89 LPRIVDAVAPPDNSGAANLKSVRKVLKNWSKK 120 (139)
T ss_pred HHHHHHHhCCCCCccchHHHHHHHHHHHHHHc
Confidence 233333 3333333 3445566667666543
No 410
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.49 E-value=2.7e+02 Score=20.96 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=33.1
Q ss_pred HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHH-hhcCCC--hhHHHHHHHhHHHhHhh
Q 019679 68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLS-LLKDEF--PDVRLNIISKLDQVNQV 138 (337)
Q Consensus 68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~-~l~d~~--~~vr~~a~~~l~~l~~~ 138 (337)
+.+.+.+.+....+++.+-..+++.+..+...++..... +.+++.+.. .+..+. ..-|..+++.+..+.+.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 344444444443334555555555555555444432211 233333333 333222 35666666666666654
No 411
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.45 E-value=7.5e+02 Score=25.75 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=44.1
Q ss_pred hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679 70 ILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 138 (337)
++.-....+-..++.|-.....++.++....+. ......++...+-.+.|++.+||..|++-|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 333333334445667766666666665422211 122456778888888999999999999998877644
No 412
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.26 E-value=6.1e+02 Score=24.59 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhc-CcchHHHHHHHHHHHHh
Q 019679 201 SIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMIN-NPHYLYRMTILQAISLL 252 (337)
Q Consensus 201 ~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l 252 (337)
.-|-.++..|+.+...-+... ....+++.+..++. |.+..+-.+|+.++..+
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 345555555555554332211 11234444444443 33444444444444444
No 413
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=25.69 E-value=91 Score=21.62 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=15.9
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHH
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
..|+.+++++++.||..|+...-.+
T Consensus 50 ~aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 50 DALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp GGGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHh
Confidence 3456778888888888776544333
No 414
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=25.59 E-value=1.8e+02 Score=23.77 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCC---------CCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHh
Q 019679 8 RYMVANQLYELCEAVGP---------EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRI 60 (337)
Q Consensus 8 R~~~~~~l~~~~~~~~~---------~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~ 60 (337)
|+.+.+++.+++-.-.. --....+...+.+++.+ +++..|+.|+-.|..++..
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~ 203 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQG 203 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcc
Confidence 67778888777743221 11123467777777765 4566788888777776543
No 415
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=25.47 E-value=3e+02 Score=20.81 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.3
Q ss_pred hhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhch
Q 019679 107 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGI 141 (337)
Q Consensus 107 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~ 141 (337)
+.+-..+.+.+ .|..|.|+.++++-+..+++..|.
T Consensus 75 ~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 75 NDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 34444455444 788999999998888888877664
No 416
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=25.46 E-value=5.2e+02 Score=23.58 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=84.3
Q ss_pred cchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCcccCh---
Q 019679 29 SDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK--- 102 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~--~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~--- 102 (337)
..-+..+.+++..++ ..||..+...|.++...-..+-+...-+..+..+.+. +-+......+..++.+.++...
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~ 258 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ 258 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344666777777776 4569999988887765433332222223334344433 3345556666666666654321
Q ss_pred hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679 103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
.......+..++-.++-.+|.+-+.++-+++.++-+-+... +.+.+-.-+..+...++.-.|.-++-.+..++..
T Consensus 259 ~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 11223455666666777778888888888888876655322 2222223333344445566666666555555543
No 417
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=24.54 E-value=1.1e+02 Score=23.03 Aligned_cols=34 Identities=12% Similarity=0.322 Sum_probs=23.1
Q ss_pred hHHHHHHhh-ccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 264 QLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 264 ~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
.+-..+... ..|..|+|+.|++..++.+++..|.
T Consensus 76 ~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 76 DIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 333333333 3788888888888888888877664
No 418
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=24.47 E-value=8.3e+02 Score=25.59 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCC---CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc
Q 019679 42 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD---SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 118 (337)
Q Consensus 42 ~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 118 (337)
+|.+||+.|++.++ .++.++..+++.+++..+--+ .++-||-..-.++..+- +...+.-.+...+.
T Consensus 902 PDqeVR~~AVqwi~----~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~-------~ah~lYWlLk~~l~ 970 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIA----RLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQ-------FAHELYWLLKDALD 970 (1639)
T ss_pred CcHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchH-------HHHHHHHHHhhccc
Q ss_pred CCChhHHHHHHHhHHHhHhhhch--------hhHHhhHHHHHHHHhcCCchHHHHHHHHH
Q 019679 119 DEFPDVRLNIISKLDQVNQVIGI--------DLLSQSLLPAIVELAEDRHWRVRLAIIEY 170 (337)
Q Consensus 119 d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~llp~l~~~~~d~~~~vr~~~~~~ 170 (337)
|....+|. -.-++.+....|+ +...-..+..+.+-....+...|...+..
T Consensus 971 d~qfs~rY--q~ll~aLl~~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~ 1028 (1639)
T KOG0905|consen 971 DSQFSLRY--QNLLAALLDCCGKNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRT 1028 (1639)
T ss_pred cceeehHH--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
No 419
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=24.18 E-value=1.5e+02 Score=19.01 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=28.4
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~ 61 (337)
..-++.+..+..+..+.-|..|+.+|+.+....
T Consensus 38 GYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 38 GYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999887654
No 420
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=5.9e+02 Score=23.72 Aligned_cols=90 Identities=12% Similarity=0.270 Sum_probs=46.3
Q ss_pred HHHHHHHHHhChHHHHhhHHHHHHHhhcC---c-chHHH---HHHHHHHHHhccccChHHHHhh---------HHHHHHh
Q 019679 208 NNVKRLAEEFGPDWAMQHIVPQVLEMINN---P-HYLYR---MTILQAISLLAPVMGSEITCSQ---------LLPVVIN 271 (337)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~---~-~~~vR---~~~~~~l~~l~~~~~~~~~~~~---------l~~~l~~ 271 (337)
.++..+.-.+|..++.-+.+|++.+++.- + +.+.- ....+.+..+...+.....+++ ++|+ +.
T Consensus 418 ecLm~IaalYgenFillQ~fP~~sdLI~lc~KRisg~LEgaiiSs~qil~~mipclsDa~iMehlqhimldaillpi-lr 496 (1034)
T KOG4190|consen 418 ECLMEIAALYGENFILLQFFPFCSDLIELCHKRISGQLEGAIISSFQILELMIPCLSDAQIMEHLQHIMLDAILLPI-LR 496 (1034)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhhcccccchhhhhHHHHHHHhccccchHHHHHHHHHHhhhhhhhhH-HH
Confidence 34555555667666666788887777642 1 11111 1223333444455554444433 2333 33
Q ss_pred hccCCCh----------hHHHHHHHHHHHHhhhhcHH
Q 019679 272 ASKDRVP----------NIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 272 ~l~d~~~----------~vr~~a~~~l~~i~~~~~~~ 298 (337)
+++..+. -+-+..+.++..+...+|.+
T Consensus 497 llsstnlvmpsgylg~~~ia~Kf~dai~ais~kiGsd 533 (1034)
T KOG4190|consen 497 LLSSTNLVMPSGYLGEEFIAQKFCDAIHAISQKIGSD 533 (1034)
T ss_pred hhccccccccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3433321 23445667788888888876
No 421
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=1.1e+03 Score=26.83 Aligned_cols=201 Identities=11% Similarity=0.083 Sum_probs=97.7
Q ss_pred hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC---CchHHHHHHHHHhhHhHhhhChhh---HHHH-HHHHHHHHc
Q 019679 123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF---FDDK-LGALCMQWL 195 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~~---~~~~-l~~~l~~~l 195 (337)
.-+..+++++..+.+..|...+ ....|.+..++.. .....|..+..+...+...+.... .... +++.++.++
T Consensus 895 ~~k~~tl~~I~~~i~~~g~~~v-~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l 973 (2382)
T KOG0890|consen 895 EQKKKTLKGIKKLISFMGSKAV-STRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLL 973 (2382)
T ss_pred HHHHHHHHhHHHHHhhccHHHH-HHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHh
Confidence 3446778888888887775443 3333433333222 223456666665555555442221 2222 566666666
Q ss_pred cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC
Q 019679 196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 275 (337)
Q Consensus 196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 275 (337)
.+.....+..-.. .++. ........+.+.+. .+-+ .-+..........+...+.+......++.+.+.+.+
T Consensus 974 ~~~~~~~v~~i~~---~i~~--~~~d~i~~~~~~~~-~l~~---~p~~~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~ 1044 (2382)
T KOG0890|consen 974 EHIELNLVSSILD---FISL--DNRDNIQILKSDIP-ILPS---IPELGNLKAAIQEARGLLSEDDLDDQLRDFMKKLKH 1044 (2382)
T ss_pred ccccHHHHHHHHH---HHHH--hhHHHHHhhhcccc-ccCC---chHHHHHHHHHHHHHhhccccchhhhhHHHHHHhHh
Confidence 4333222222111 1111 11111111111111 1111 122233333334444444433345667777888888
Q ss_pred CChhHHHHHHHHHHHHhhh------------hcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 276 RVPNIKFNVAKVLQSLIPI------------VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 276 ~~~~vr~~a~~~l~~i~~~------------~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
.+..||..+.+-|+..... .+++....+++..|..-+.+.....+..+++.|+.+...
T Consensus 1045 enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lgai 1114 (2382)
T KOG0890|consen 1045 ENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCAKCLGELGAI 1114 (2382)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888877776541 111122334444454444444566788888888877643
No 422
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=23.92 E-value=6.1e+02 Score=23.85 Aligned_cols=281 Identities=14% Similarity=0.207 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHhCCCCccc----chHHHHHHhcCCChH--------HHHHHHHHhHHHHHHhhCHH---HHHHhhhHh
Q 019679 9 YMVANQLYELCEAVGPEPTRS----DVVPAYVRLLRDNEA--------EVRIAAAGKVTKICRILNPE---LAIQHILPC 73 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~----~l~~~l~~~~~d~~~--------~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~ 73 (337)
.-.|+++-++.+..+.+.... .+.......+...++ ..|.+-...++.+...++.. .+.+.++.-
T Consensus 10 yI~CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~e 89 (552)
T PF14222_consen 10 YILCRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAE 89 (552)
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 345777777777766543322 455555555543333 24545555555555554443 344555666
Q ss_pred hHHhcCCCcHHHHHHHHHHHHhcC----cccChhhHH--hhhHHHHHHhhcCC--ChhHHHHHHHhHHHhHhhhch----
Q 019679 74 VKELSSDSSQHVRSALATVIMGMA----PILGKDATI--EQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGI---- 141 (337)
Q Consensus 74 l~~l~~d~~~~vr~~a~~~l~~l~----~~~~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~---- 141 (337)
+.+..++.+ ..+......+..+- +..+.+... -+++.-+.+++.+. +.+++.+-+..+..+..-+..
T Consensus 90 L~~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~ 168 (552)
T PF14222_consen 90 LEKLRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATA 168 (552)
T ss_pred HHHhcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 666665434 45544444444442 344444443 35666677776665 678999999998877654321
Q ss_pred h-------hHHhhHHHHHHHHhcC-CchHHHHHHHHHhhHhHhhhChhhHHHHHH----HHHHHHccccchHHHHHHHHH
Q 019679 142 D-------LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLG----ALCMQWLKDKVYSIRDAAANN 209 (337)
Q Consensus 142 ~-------~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~----~~l~~~l~d~~~~vr~~a~~~ 209 (337)
+ .....+.|...++... ++|.+ +.-....+.-.-+++.|..+.. ..+...++|. ..|..++.+
T Consensus 169 evn~P~W~~~v~~i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~ 243 (552)
T PF14222_consen 169 EVNHPKWKEAVETIYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALEC 243 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHH
Confidence 1 1234566666666543 44443 2222222222224555665555 3444456666 788999999
Q ss_pred HHHHHHHhC-------hHHHHhhHHHHHHHhhc--CcchHHHH-HHHHHHHHhccccCh---HH-HHhhHHHHHHhhcc-
Q 019679 210 VKRLAEEFG-------PDWAMQHIVPQVLEMIN--NPHYLYRM-TILQAISLLAPVMGS---EI-TCSQLLPVVINASK- 274 (337)
Q Consensus 210 l~~~~~~~~-------~~~~~~~l~~~l~~~~~--~~~~~vR~-~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~l~- 274 (337)
+.++.-.+= .......+-+.+..++. .++|-.+. .-+..+..+....|. ++ +.+.++|.+.....
T Consensus 244 l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~ 323 (552)
T PF14222_consen 244 LSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNG 323 (552)
T ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHcccccc
Confidence 888875431 11112223333333332 22344444 333334444333332 22 34456666655443
Q ss_pred ----CCChhHHHHHHHHHHHHhhhh
Q 019679 275 ----DRVPNIKFNVAKVLQSLIPIV 295 (337)
Q Consensus 275 ----d~~~~vr~~a~~~l~~i~~~~ 295 (337)
.-.++--.-+++++-.+...+
T Consensus 324 s~~~~l~pERm~IgIRA~l~Il~~~ 348 (552)
T PF14222_consen 324 SSLENLNPERMIIGIRAFLAILSDL 348 (552)
T ss_pred ccccccChhHHHHHHHHHHHHHHhh
Confidence 223555556777777776554
No 423
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=23.39 E-value=2.9e+02 Score=21.29 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHH
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNII 129 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~ 129 (337)
.++.||..|+++|..... +.... .+|.+.+.++ |....+..-.+
T Consensus 83 ~~~~Vr~yAvr~L~~~~~----e~l~~-YlpQLVQaLryd~~~~l~~FLl 127 (175)
T cd00871 83 GHPLVLQYAVRVLESYPV----ETVFF-YIPQIVQALRYDKMGYVEEYIL 127 (175)
T ss_pred CCHHHHHHHHHHHHhCCH----HHHHH-HHHHHHHHHhccccchHHHHHH
Confidence 367899999999998764 44444 4455555554 55555554333
No 424
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.31 E-value=5.2e+02 Score=22.82 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=22.9
Q ss_pred HhhHHHHHHhhc--cCCChhHHHHHHHHHHHHhhhhc
Q 019679 262 CSQLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 262 ~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
...++|.+++.+ .++.+.+|..+...+..+.+...
T Consensus 254 ~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 254 LRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 344555555543 55568888888888888876543
No 425
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.84 E-value=5e+02 Score=22.38 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=89.4
Q ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---------HhhHHHHHHHhhc-Ccc---------hHHHHHHHHH
Q 019679 188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---------MQHIVPQVLEMIN-NPH---------YLYRMTILQA 248 (337)
Q Consensus 188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---------~~~l~~~l~~~~~-~~~---------~~vR~~~~~~ 248 (337)
+..+...|+.....+...+++.+..+...-|+... ....+|.+...-. +.. ..+|.+++.+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 66677777777777777888888888764443321 1123333332221 001 2799999999
Q ss_pred HHHhccccChHHH-----HhhHHHHHHhhccCCChhHHHHHHHHHHHHh-h------hhcHHHHHHhhhHHHHhhhCCCC
Q 019679 249 ISLLAPVMGSEIT-----CSQLLPVVINASKDRVPNIKFNVAKVLQSLI-P------IVDQSVVEKSIRPCLVELSEDPD 316 (337)
Q Consensus 249 l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~-~------~~~~~~~~~~i~~~l~~l~~d~~ 316 (337)
+-.+......... ...++..+++.+.++.+++-.....+|..-. . ......+.+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 8888766554322 2235778888887777777667777766432 1 11222445666677777766656
Q ss_pred c----cHHHHHHHHHHHHHH
Q 019679 317 V----DVRFFATQALQSKDQ 332 (337)
Q Consensus 317 ~----~vr~~a~~al~~l~~ 332 (337)
+ .++..+-+.|..+..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 5 788888888877664
No 426
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=21.59 E-value=4.3e+02 Score=21.16 Aligned_cols=176 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhh----ChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQL----GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
.+.+.+.+.+..+|..+++.+....... +...+..---..+..+-..+.+.+++..+..|+.+...+......-..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Q ss_pred HHHHHHhhcCcchH-------------HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCCh--------hHHHHHH
Q 019679 227 VPQVLEMINNPHYL-------------YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP--------NIKFNVA 285 (337)
Q Consensus 227 ~~~l~~~~~~~~~~-------------vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--------~vr~~a~ 285 (337)
+..+...+. +.|. +|...-..+..+...--.......+...+.+..-+++. .+-..-.
T Consensus 84 ~~~f~~tm~-rEW~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~~~~l~~~~~~p~Gl~~H~~Di~l 162 (217)
T PF05997_consen 84 LKAFWETMR-REWDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILSETPLNPNDQVPNGLRYHFADIFL 162 (217)
T ss_pred HHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccCCCcCCCchhHHHHHHHHHH
Q ss_pred HHHHHHhh---------hhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679 286 KVLQSLIP---------IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327 (337)
Q Consensus 286 ~~l~~i~~---------~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 327 (337)
.-|..... .+....+...+-|...-+...++..++..+.+.+
T Consensus 163 dEL~k~~~~~~~~~e~~~~~~~~~~~ll~PF~~~~~~s~~k~l~~~i~~~V 213 (217)
T PF05997_consen 163 DELEKVGGSESEDEEEENLPAEPLLLLLEPFVKLLAKSPDKVLRKRIKESV 213 (217)
T ss_pred HHHHHHhcccccchhcccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
No 427
>COG2733 Predicted membrane protein [Function unknown]
Probab=21.55 E-value=5.8e+02 Score=22.66 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=55.6
Q ss_pred chHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679 30 DVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 107 (337)
Q Consensus 30 ~l~~~l~~~~~d~~--~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 107 (337)
++...+-+++.+++ ..|-......+..+.+.++++.....+-..+..-+....+. ..+...|..+...-+.+...+
T Consensus 109 ~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~--~~~~~vL~~l~~d~r~q~l~D 186 (415)
T COG2733 109 DIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLG--PTAGRVLESLTADDRHQALLD 186 (415)
T ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHhcccHHHHHH
Confidence 34555666666642 44555555666666676666654433333333333333322 334444445544444444556
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 138 (337)
.++..+.+.+.+ ..+++.+...+....+.
T Consensus 187 ~~~~~L~r~~~~--~~v~~~i~~~i~r~~~e 215 (415)
T COG2733 187 KLIDRLIRWLLN--DKVREFIAAVIVRYLEE 215 (415)
T ss_pred HHHHHHHHHhhh--hhhHHHHHHHHHHHHHh
Confidence 666666666544 56666666666665554
No 428
>COG4335 DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=20.49 E-value=3.7e+02 Score=20.03 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=60.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHH---HHhhCHH-HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKI---CRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 105 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~---~~~~~~~-~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 105 (337)
..+..+..+..+.+..||+.+-++..-= +..+.+. .......+.+.++..|++-.||+..+..+..+...-+.
T Consensus 39 at~a~l~~wSe~~ne~vrrLssec~r~rlPws~~L~~~~~~~~~~~~il~al~adK~lyvrksvan~lndi~k~hp~--- 115 (167)
T COG4335 39 ATFAPLLRWSEHQNEHVRRLSSECTRPRLPWSKLLLKLQKDPSPVNMILTALKADKELYVRKSVANNLNDIKKVHPS--- 115 (167)
T ss_pred HHHHHHhhhccCccHHHHHHHhcccCCCCchHHHHHHHhhcCcchhHHHHhhHhHHHHHHHHHHHHHHHHhhhcChH---
Confidence 4566677888889999998887765321 1111111 12233556666777788888888888888777754332
Q ss_pred HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679 106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 138 (337)
..+..+..--++ ++..|...-+++.++++.
T Consensus 116 --f~~~~~~aw~kt-~~~~~wiIkq~~R~vak~ 145 (167)
T COG4335 116 --FDVSAFDAWAKT-SNHTRWIIKQAMRTVAKK 145 (167)
T ss_pred --HHHHHHHhhccc-cchHHHHHHHHHHHHHHc
Confidence 122222222222 456666666666666654
No 429
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.47 E-value=4.4e+02 Score=20.83 Aligned_cols=40 Identities=8% Similarity=0.151 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHH
Q 019679 9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 48 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~ 48 (337)
+.++..+....+.++.-....++.+.+......++.+.|.
T Consensus 87 h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~~~~~~ri 126 (203)
T cd04374 87 KTITSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRV 126 (203)
T ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhCCCHHHHH
Confidence 3455566666666665555555555555555554444443
No 430
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.31 E-value=3.9e+02 Score=20.21 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
..++|.+..+|..+...-...++..+..+.+.|++.
T Consensus 68 ~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 68 VDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888777643
No 431
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=20.22 E-value=8e+02 Score=23.79 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=38.8
Q ss_pred ChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC--CchHHHHHHHHHhhH
Q 019679 101 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPL 173 (337)
Q Consensus 101 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d--~~~~vr~~~~~~l~~ 173 (337)
|-....+.++.+...++++.--.-.+..+..+..+++....+--.+.++..+.--++| +.+..+...++.+..
T Consensus 920 GIAVvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE 994 (1253)
T KOG3534|consen 920 GIAVVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLRE 994 (1253)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334457777777788877666666667777777776543332233344433322222 223444444444443
Done!