Query 019679
Match_columns 337
No_of_seqs 175 out of 1283
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 2E-41 6.7E-46 310.9 31.0 331 2-332 253-587 (588)
2 1b3u_A Protein (protein phosph 100.0 4.6E-40 1.6E-44 301.8 32.2 334 2-335 175-512 (588)
3 4fdd_A Transportin-1; heat rep 100.0 1.6E-28 5.5E-33 234.2 37.2 333 2-336 101-475 (852)
4 2bpt_A Importin beta-1 subunit 100.0 2.8E-25 9.7E-30 212.3 36.7 332 2-335 106-485 (861)
5 4fdd_A Transportin-1; heat rep 100.0 3.6E-26 1.2E-30 218.0 29.7 332 3-336 333-703 (852)
6 2bpt_A Importin beta-1 subunit 100.0 1.7E-25 5.9E-30 213.8 32.2 333 2-336 342-715 (861)
7 1ibr_B P95, importin beta-1 su 99.9 2.3E-25 8E-30 198.2 28.6 307 2-310 101-458 (462)
8 1qgr_A Protein (importin beta 99.9 1.8E-24 6.2E-29 207.1 34.2 331 2-335 101-482 (876)
9 1u6g_C TIP120 protein, CAND1; 99.9 1.4E-25 4.9E-30 221.6 23.2 332 2-335 59-466 (1230)
10 1u6g_C TIP120 protein, CAND1; 99.9 2.8E-24 9.6E-29 212.4 30.6 331 5-335 228-682 (1230)
11 1qgr_A Protein (importin beta 99.9 3.7E-24 1.3E-28 205.0 30.5 333 2-336 339-726 (876)
12 1ibr_B P95, importin beta-1 su 99.9 2.2E-24 7.6E-29 191.9 22.9 331 3-336 49-441 (462)
13 2jdq_A Importin alpha-1 subuni 99.9 6.4E-23 2.2E-27 181.9 30.3 332 2-333 31-391 (450)
14 1wa5_B Importin alpha subunit; 99.9 8.1E-23 2.8E-27 184.9 28.2 333 2-334 98-459 (530)
15 2jdq_A Importin alpha-1 subuni 99.9 6.1E-22 2.1E-26 175.6 27.7 328 4-331 78-442 (450)
16 1wa5_B Importin alpha subunit; 99.9 7.9E-22 2.7E-26 178.4 28.2 328 4-332 144-510 (530)
17 4b8j_A Importin subunit alpha- 99.9 1.4E-21 4.7E-26 176.8 26.2 333 2-334 85-445 (528)
18 1oyz_A Hypothetical protein YI 99.9 3.8E-20 1.3E-24 153.5 24.2 254 30-328 23-278 (280)
19 4b8j_A Importin subunit alpha- 99.9 7.7E-20 2.6E-24 165.4 27.3 304 30-333 74-401 (528)
20 1oyz_A Hypothetical protein YI 99.9 1E-19 3.6E-24 150.9 20.4 244 2-290 34-279 (280)
21 2vgl_B AP-2 complex subunit be 99.8 3.5E-19 1.2E-23 162.6 24.6 314 3-332 61-419 (591)
22 2vgl_B AP-2 complex subunit be 99.8 1.4E-17 4.9E-22 152.0 31.6 319 4-335 26-385 (591)
23 3ul1_B Importin subunit alpha- 99.8 4.7E-18 1.6E-22 152.5 26.1 332 3-334 69-432 (510)
24 3tpo_A Importin subunit alpha- 99.8 1.4E-17 4.8E-22 150.3 28.6 332 3-334 88-451 (529)
25 1jdh_A Beta-catenin; beta-cate 99.8 9.4E-18 3.2E-22 151.7 25.3 329 2-330 112-528 (529)
26 3now_A UNC-45 protein, SD10334 99.8 1.1E-16 3.8E-21 147.7 30.9 330 3-332 342-737 (810)
27 2qk2_A LP04448P; mini spindles 99.8 3.4E-18 1.2E-22 138.5 18.6 195 23-221 8-211 (242)
28 1jdh_A Beta-catenin; beta-cate 99.8 1.5E-17 5.1E-22 150.4 24.9 329 3-331 72-488 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.8 4.6E-17 1.6E-21 150.5 27.2 331 2-332 109-527 (644)
30 2qk2_A LP04448P; mini spindles 99.8 1.1E-17 3.7E-22 135.5 19.4 188 108-300 15-212 (242)
31 3ltm_A Alpha-REP4; protein eng 99.8 1.1E-17 3.9E-22 132.6 18.9 187 29-255 18-204 (211)
32 3tpo_A Importin subunit alpha- 99.8 1.2E-16 3.9E-21 144.3 27.5 329 2-330 131-495 (529)
33 3ul1_B Importin subunit alpha- 99.8 1.3E-16 4.3E-21 143.3 27.5 303 31-333 58-388 (510)
34 3now_A UNC-45 protein, SD10334 99.8 2.6E-16 8.8E-21 145.3 29.5 330 3-332 302-694 (810)
35 2z6g_A B-catenin; FULL-length, 99.8 5.2E-17 1.8E-21 152.6 25.6 331 2-332 161-518 (780)
36 2z6g_A B-catenin; FULL-length, 99.8 5.5E-17 1.9E-21 152.5 25.2 331 2-332 245-663 (780)
37 3ltm_A Alpha-REP4; protein eng 99.8 3E-17 1E-21 130.1 19.2 185 70-294 20-204 (211)
38 3ltj_A Alpharep-4; protein eng 99.8 6.5E-17 2.2E-21 127.2 20.7 187 28-254 12-198 (201)
39 1w63_A Adapter-related protein 99.8 1.3E-16 4.6E-21 146.1 25.6 279 2-297 118-418 (618)
40 3ltj_A Alpharep-4; protein eng 99.8 3.8E-17 1.3E-21 128.5 19.1 187 107-333 13-199 (201)
41 2z6h_A Catenin beta-1, beta-ca 99.8 1.9E-16 6.6E-21 146.3 26.4 331 2-332 25-382 (644)
42 1w63_A Adapter-related protein 99.7 1.6E-15 5.4E-20 139.0 23.7 298 22-335 64-417 (618)
43 4hxt_A De novo protein OR329; 99.7 6.1E-15 2.1E-19 120.0 24.4 226 110-335 4-244 (252)
44 1wa5_C Importin alpha RE-expor 99.7 3.5E-14 1.2E-18 137.0 33.3 327 4-333 98-526 (960)
45 2vgl_A Adaptor protein complex 99.7 6.2E-15 2.1E-19 134.8 26.4 294 31-336 112-437 (621)
46 2qk1_A Protein STU2; STU2P, XM 99.7 3.9E-16 1.3E-20 126.1 16.2 192 29-220 15-225 (249)
47 2qk1_A Protein STU2; STU2P, XM 99.7 1E-15 3.5E-20 123.6 16.9 201 107-311 15-234 (249)
48 4hxt_A De novo protein OR329; 99.7 3.6E-15 1.2E-19 121.4 20.1 224 31-255 3-242 (252)
49 4db8_A Armadillo-repeat protei 99.7 4.2E-15 1.4E-19 121.1 20.0 225 108-332 12-251 (252)
50 2iw3_A Elongation factor 3A; a 99.7 1.9E-14 6.4E-19 134.8 26.4 287 44-336 28-328 (986)
51 4db8_A Armadillo-repeat protei 99.7 6.1E-15 2.1E-19 120.1 19.6 224 29-253 11-250 (252)
52 1xm9_A Plakophilin 1; armadill 99.7 7.5E-14 2.6E-18 123.4 25.2 330 2-331 13-448 (457)
53 3l6x_A Catenin delta-1; cateni 99.6 8.6E-13 2.9E-17 118.0 31.0 330 3-332 60-476 (584)
54 2vgl_A Adaptor protein complex 99.6 2.8E-13 9.6E-18 123.8 27.5 314 4-331 51-397 (621)
55 1lrv_A LRV, leucine-rich repea 99.6 5.4E-17 1.9E-21 129.2 1.7 187 36-328 56-242 (244)
56 1lrv_A LRV, leucine-rich repea 99.6 1.6E-16 5.3E-21 126.6 2.5 182 2-289 61-242 (244)
57 3nmz_A APC variant protein; pr 99.6 1.4E-12 4.8E-17 113.9 25.9 305 29-333 69-451 (458)
58 1xm9_A Plakophilin 1; armadill 99.6 6.6E-13 2.3E-17 117.4 24.1 299 32-332 4-406 (457)
59 4ady_A RPN2, 26S proteasome re 99.6 3.2E-12 1.1E-16 118.6 27.9 278 30-332 392-676 (963)
60 3l6x_A Catenin delta-1; cateni 99.6 9.3E-12 3.2E-16 111.3 29.8 319 13-331 30-431 (584)
61 4ady_A RPN2, 26S proteasome re 99.6 2.1E-12 7.3E-17 119.7 26.0 298 3-330 407-717 (963)
62 4db6_A Armadillo repeat protei 99.5 8.2E-13 2.8E-17 104.4 18.7 185 148-332 13-209 (210)
63 4db6_A Armadillo repeat protei 99.5 1.1E-12 3.8E-17 103.6 18.4 187 28-214 10-208 (210)
64 3m1i_C Exportin-1; heat repeat 99.5 1.1E-10 3.9E-15 113.6 34.8 327 4-335 113-572 (1049)
65 1wa5_C Importin alpha RE-expor 99.5 4.8E-12 1.6E-16 122.2 21.7 327 3-335 373-751 (960)
66 3nmz_A APC variant protein; pr 99.5 3.7E-11 1.3E-15 105.0 24.2 289 4-294 95-451 (458)
67 3opb_A SWI5-dependent HO expre 99.4 1.8E-10 6.3E-15 104.9 28.5 328 5-332 308-728 (778)
68 3tjz_B Coatomer subunit gamma; 99.4 3.5E-12 1.2E-16 106.9 16.1 282 29-327 67-348 (355)
69 2x19_B Importin-13; nuclear tr 99.4 4.1E-10 1.4E-14 109.0 32.9 324 4-335 116-559 (963)
70 2x1g_F Cadmus; transport prote 99.4 3.6E-11 1.2E-15 116.4 25.2 325 5-335 203-618 (971)
71 2x1g_F Cadmus; transport prote 99.4 8.8E-11 3E-15 113.7 27.8 324 4-335 98-575 (971)
72 3ibv_A Exportin-T; karyopherin 99.4 7.5E-10 2.6E-14 106.2 31.2 329 3-335 102-569 (980)
73 3nmw_A APC variant protein; AR 99.4 1.5E-10 5E-15 98.2 22.3 253 44-296 46-337 (354)
74 2db0_A 253AA long hypothetical 99.4 3.2E-09 1.1E-13 78.0 25.9 216 107-333 31-247 (253)
75 3oc3_A Helicase MOT1, MOT1; re 99.4 7.9E-12 2.7E-16 107.4 14.2 256 31-328 175-432 (800)
76 2x19_B Importin-13; nuclear tr 99.4 3.7E-10 1.3E-14 109.3 26.6 326 2-334 460-848 (963)
77 3opb_A SWI5-dependent HO expre 99.4 2.5E-10 8.5E-15 104.0 23.3 302 29-332 295-683 (778)
78 3nmw_A APC variant protein; AR 99.4 2.6E-10 9E-15 96.6 21.9 250 84-333 47-335 (354)
79 3ibv_A Exportin-T; karyopherin 99.3 2.4E-10 8.4E-15 109.5 23.2 329 4-335 206-631 (980)
80 2of3_A ZYG-9; multifunctional 99.3 8.9E-11 3E-15 93.9 16.6 181 34-220 50-241 (266)
81 3m1i_C Exportin-1; heat repeat 99.3 1.1E-09 3.7E-14 106.8 27.4 330 4-335 208-621 (1049)
82 4ffb_C Protein STU2; tubulin f 99.3 3.4E-11 1.2E-15 99.3 14.4 181 113-296 14-215 (278)
83 4ffb_C Protein STU2; tubulin f 99.3 7.4E-11 2.5E-15 97.2 16.0 185 32-220 12-217 (278)
84 2of3_A ZYG-9; multifunctional 99.3 7.2E-10 2.5E-14 88.7 20.7 181 113-299 51-242 (266)
85 2db0_A 253AA long hypothetical 99.3 5E-09 1.7E-13 77.0 22.8 215 67-292 30-245 (253)
86 3oc3_A Helicase MOT1, MOT1; re 99.3 6.7E-11 2.3E-15 101.8 15.0 129 1-136 184-327 (800)
87 2iw3_A Elongation factor 3A; a 99.3 3E-10 1E-14 106.7 20.2 236 9-252 70-322 (986)
88 1xqr_A HSPBP1 protein; armadil 99.3 6.1E-10 2.1E-14 91.9 19.3 172 162-333 55-239 (296)
89 1xqr_A HSPBP1 protein; armadil 99.3 1.1E-09 3.9E-14 90.2 20.7 224 107-330 27-285 (296)
90 3tjz_B Coatomer subunit gamma; 99.2 8.8E-11 3E-15 98.4 12.3 272 3-291 80-351 (355)
91 3b2a_A TON_1937, putative unch 99.2 1.7E-09 5.9E-14 82.8 17.7 183 29-215 32-218 (265)
92 4hat_C Exportin-1; heat repeat 99.2 2.2E-08 7.5E-13 96.3 29.3 330 4-336 208-622 (1023)
93 3b2a_A TON_1937, putative unch 99.2 1.3E-08 4.4E-13 78.1 20.6 221 107-332 32-261 (265)
94 1te4_A Conserved protein MTH18 99.2 8.3E-12 2.8E-16 90.6 3.0 120 29-173 11-130 (131)
95 1te4_A Conserved protein MTH18 99.2 3.4E-12 1.2E-16 92.6 0.9 122 183-329 9-130 (131)
96 4hat_C Exportin-1; heat repeat 99.1 4.9E-08 1.7E-12 93.9 25.5 169 13-182 435-624 (1023)
97 3l9t_A Putative uncharacterize 99.1 5.2E-10 1.8E-14 86.5 9.6 141 68-220 70-211 (240)
98 3l9t_A Putative uncharacterize 98.9 7.5E-08 2.6E-12 74.5 16.5 140 146-296 70-210 (240)
99 3gjx_A Exportin-1; transport, 98.8 5.2E-05 1.8E-09 73.1 35.3 326 4-334 125-597 (1073)
100 3a6p_A Exportin-5; exportin-5, 98.7 2.4E-05 8.1E-10 77.2 28.8 133 2-138 107-277 (1204)
101 3gjx_A Exportin-1; transport, 98.6 2.2E-05 7.5E-10 75.7 25.8 172 10-182 458-650 (1073)
102 3a6p_A Exportin-5; exportin-5, 98.5 4.6E-05 1.6E-09 75.2 24.9 302 30-335 249-660 (1204)
103 3grl_A General vesicular trans 98.5 0.00018 6.1E-09 64.5 25.1 302 29-331 20-393 (651)
104 3u0r_A Apoptosis inhibitor 5; 98.5 0.00023 7.9E-09 61.0 24.4 251 33-296 32-301 (507)
105 3u0r_A Apoptosis inhibitor 5; 98.4 0.00022 7.4E-09 61.1 22.6 243 81-335 40-301 (507)
106 3tt9_A Plakophilin-2; cell adh 98.3 2.1E-05 7.2E-10 62.0 14.3 110 29-138 7-125 (233)
107 3tt9_A Plakophilin-2; cell adh 98.3 4.3E-05 1.5E-09 60.3 14.8 186 70-255 9-230 (233)
108 3grl_A General vesicular trans 98.1 0.0034 1.2E-07 56.4 24.8 255 77-332 30-342 (651)
109 1vsy_5 Proteasome activator BL 97.9 0.00015 5.2E-09 69.4 13.7 186 109-297 761-970 (997)
110 1lsh_A Lipovitellin (LV-1N, LV 97.9 0.00097 3.3E-08 64.8 18.8 184 83-289 339-539 (1056)
111 1vsy_5 Proteasome activator BL 97.7 6.1E-05 2.1E-09 72.1 7.5 188 31-221 761-972 (997)
112 3gs3_A Symplekin, LD45768P; he 97.6 0.02 6.7E-07 45.7 20.6 128 123-253 30-172 (257)
113 4gmo_A Putative uncharacterize 97.5 0.00035 1.2E-08 64.8 9.7 147 68-215 34-214 (684)
114 4gmo_A Putative uncharacterize 97.5 0.0014 4.9E-08 60.7 13.4 74 107-181 34-110 (684)
115 3gs3_A Symplekin, LD45768P; he 97.4 0.025 8.7E-07 45.0 17.1 111 222-334 50-175 (257)
116 1lsh_A Lipovitellin (LV-1N, LV 97.4 0.0098 3.3E-07 57.9 17.6 131 185-328 390-539 (1056)
117 3o2t_A Symplekin; heat repeat, 97.2 0.087 3E-06 44.5 23.8 184 123-311 40-272 (386)
118 4atg_A TAF6; transcription, TF 97.1 0.049 1.7E-06 41.2 15.7 141 123-274 23-178 (196)
119 3o2t_A Symplekin; heat repeat, 97.1 0.048 1.7E-06 46.1 16.6 147 185-335 25-186 (386)
120 1upk_A MO25 protein; transfera 95.0 1.2 4.2E-05 36.6 19.8 209 105-315 75-313 (341)
121 4atg_A TAF6; transcription, TF 94.9 0.88 3E-05 34.4 16.7 141 84-235 23-178 (196)
122 3ldz_A STAM-1, signal transduc 94.1 0.33 1.1E-05 34.6 8.3 70 266-335 44-117 (140)
123 2b6c_A Hypothetical protein EF 93.9 1.7 5.9E-05 33.6 13.5 133 150-296 58-191 (220)
124 1upk_A MO25 protein; transfera 93.5 2.7 9.2E-05 34.6 15.6 105 111-215 167-283 (341)
125 2b6c_A Hypothetical protein EF 93.5 2.1 7.1E-05 33.2 15.9 130 33-176 58-188 (220)
126 3g2s_A C-terminal fragment of 92.5 1.2 4.3E-05 32.0 9.1 72 265-336 49-130 (149)
127 1x5b_A Signal transducing adap 92.1 1.8 6.2E-05 31.7 9.8 74 225-298 52-130 (163)
128 3ldz_A STAM-1, signal transduc 91.9 2.5 8.4E-05 30.0 11.9 97 78-180 18-118 (140)
129 3jxy_A Alkylpurine DNA glycosy 91.0 4.6 0.00016 31.5 12.9 132 151-296 65-198 (232)
130 3jxy_A Alkylpurine DNA glycosy 89.9 5.8 0.0002 30.9 15.0 188 76-289 34-223 (232)
131 1elk_A Target of MYB1; superhe 89.3 3.4 0.00012 30.0 9.1 73 225-297 53-134 (157)
132 1juq_A ADP-ribosylation factor 89.2 5.2 0.00018 29.5 11.3 74 225-298 50-133 (171)
133 1x5b_A Signal transducing adap 89.0 5.3 0.00018 29.2 12.8 97 78-180 28-129 (163)
134 1mhq_A ADP-ribosylation factor 87.8 6 0.0002 28.3 12.2 74 225-298 38-121 (148)
135 3zyq_A Hepatocyte growth facto 86.9 9.3 0.00032 29.6 11.8 98 77-180 20-122 (226)
136 3zyq_A Hepatocyte growth facto 85.5 11 0.00038 29.2 11.7 75 29-103 44-123 (226)
137 3g2s_A C-terminal fragment of 85.4 8.2 0.00028 27.7 13.1 97 78-180 24-130 (149)
138 1vsy_4 Proteasome activator BL 84.9 26 0.00089 33.0 21.9 74 66-139 336-414 (799)
139 1ho8_A Vacuolar ATP synthase s 83.0 1.8 6.1E-05 37.6 5.3 57 81-137 417-476 (480)
140 3ut4_A CTHE_2751, putative unc 81.9 11 0.00037 26.4 8.5 92 225-329 31-127 (134)
141 1dvp_A HRS, hepatocyte growth 79.7 17 0.0006 27.9 9.6 74 28-101 40-118 (220)
142 1juq_A ADP-ribosylation factor 79.7 16 0.00054 26.9 13.9 97 78-180 26-132 (171)
143 1mhq_A ADP-ribosylation factor 79.2 15 0.00051 26.3 13.8 97 78-180 14-120 (148)
144 1vdy_A Hypothetical protein (R 79.1 12 0.00039 26.5 7.5 69 263-331 48-129 (140)
145 2npp_B PP2A, B subunit, serine 78.2 33 0.0011 29.7 24.4 251 80-332 128-399 (449)
146 2npp_B PP2A, B subunit, serine 77.4 35 0.0012 29.5 20.2 208 1-210 127-350 (449)
147 1dvp_A HRS, hepatocyte growth 76.5 24 0.00081 27.1 11.8 73 224-296 41-118 (220)
148 2jak_A Serine/threonine-protei 74.1 40 0.0014 28.6 17.0 207 1-209 139-361 (392)
149 3ut4_A CTHE_2751, putative unc 73.7 20 0.00069 25.0 9.3 92 30-134 31-127 (134)
150 1t06_A Hypothetical protein; s 73.2 6 0.00021 30.9 5.4 68 72-139 111-182 (235)
151 3fga_B Serine/threonine-protei 72.3 45 0.0015 28.4 22.8 208 1-210 94-317 (403)
152 1vdy_A Hypothetical protein (R 71.5 24 0.00082 24.9 9.7 68 224-292 48-129 (140)
153 2fv2_A RCD1 required for cell 71.3 30 0.001 27.3 8.7 69 29-97 100-173 (268)
154 3bwt_A Protein PUF4; pumilio, 70.7 43 0.0015 27.5 12.4 16 107-122 118-133 (333)
155 1t06_A Hypothetical protein; s 69.4 24 0.00082 27.5 8.0 71 226-296 109-183 (235)
156 3fga_B Serine/threonine-protei 68.1 56 0.0019 27.8 23.6 250 80-332 95-366 (403)
157 3dad_A FH1/FH2 domain-containi 67.3 52 0.0018 27.2 17.2 103 37-139 125-233 (339)
158 1vsy_4 Proteasome activator BL 66.3 89 0.003 29.5 23.9 110 30-139 339-457 (799)
159 1elk_A Target of MYB1; superhe 65.4 35 0.0012 24.5 12.2 96 78-179 29-133 (157)
160 1sz9_A PCF11 protein; RNA poly 64.5 35 0.0012 24.2 11.2 72 223-294 41-115 (144)
161 1w9c_A CRM1 protein, exportin 63.6 60 0.0021 26.6 25.8 135 83-218 43-199 (321)
162 3rru_A TOM1L1 protein; structu 59.9 45 0.0015 23.9 9.0 97 157-259 30-135 (152)
163 2fv2_A RCD1 required for cell 55.4 75 0.0026 25.1 11.1 66 148-213 102-172 (268)
164 3ebb_A Phospholipase A2-activa 51.4 97 0.0033 25.2 12.3 94 239-332 162-263 (304)
165 3dad_A FH1/FH2 domain-containi 50.5 1.1E+02 0.0036 25.3 19.7 100 118-217 128-233 (339)
166 1sz9_A PCF11 protein; RNA poly 49.7 66 0.0023 22.7 12.2 99 72-177 14-115 (144)
167 3vld_A DNA mismatch repair pro 47.7 1.4E+02 0.0049 26.0 15.0 147 27-178 70-227 (500)
168 2jak_A Serine/threonine-protei 46.8 1.3E+02 0.0045 25.4 17.0 207 80-288 140-362 (392)
169 3pst_A Protein DOA1; protein d 46.1 28 0.00097 29.8 5.0 107 31-137 263-389 (425)
170 3l3f_X Protein DOA1, DOA1/UFD3 45.5 20 0.0007 29.9 4.0 127 8-137 180-326 (362)
171 1ho8_A Vacuolar ATP synthase s 43.4 1.7E+02 0.0057 25.6 18.1 68 186-253 395-475 (480)
172 3s4w_B Protein FACD2, fanconi 36.2 3.5E+02 0.012 27.2 13.8 133 185-319 399-536 (1323)
173 4f52_E Glomulin; cullin-ring E 34.8 2.6E+02 0.0088 25.3 20.8 107 221-330 313-429 (596)
174 2jtt_C Calcyclin-binding prote 34.1 50 0.0017 16.9 3.1 25 304-328 8-32 (35)
175 4flb_A Regulation of nuclear P 32.6 1.2E+02 0.0041 20.8 10.9 98 187-293 9-112 (132)
176 3d9j_A RNA-binding protein 16; 31.2 1.4E+02 0.0047 21.0 8.6 92 204-298 23-126 (145)
177 3rru_A TOM1L1 protein; structu 28.3 1.6E+02 0.0055 20.9 10.2 95 3-103 32-135 (152)
178 3k49_A MRNA-binding protein PU 27.8 2.6E+02 0.0089 23.2 8.8 291 4-313 54-362 (369)
179 3gae_A Protein DOA1; UFD3, CDC 27.8 1E+02 0.0035 24.2 5.3 103 35-137 95-217 (253)
180 2qzg_A Conserved uncharacteriz 27.2 1.3E+02 0.0044 19.4 8.1 60 62-121 11-73 (94)
181 3gvo_A Pumilio 2, pumilio homo 26.0 2.7E+02 0.0094 22.8 15.9 14 108-121 131-144 (351)
182 4f52_E Glomulin; cullin-ring E 20.3 4.8E+02 0.016 23.5 12.4 107 183-292 314-430 (596)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2e-41 Score=310.89 Aligned_cols=331 Identities=59% Similarity=0.977 Sum_probs=308.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhHHh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKEL 77 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~~l 77 (337)
|++|.||+.++++++.++..++++...+.++|.+.+++.|+++.||..++.+++.+++.++++ .+.+.++|.+..+
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 789999999999999999988876666789999999999999999999999999999988765 4567899999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 157 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~ 157 (337)
++|++|.||..++.+++.++..+|++.....++|.+..+++|++++||..++.+++.+.+..+.+...+.++|.+.+..+
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987767889999999999999999999999999999998887777889999999999
Q ss_pred CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679 158 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237 (337)
Q Consensus 158 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 237 (337)
|++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||+.|+.+++.+...+|.+++.+.++|.+..+..++
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~ 492 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998877788999999999999999999999999999999998877788999999999999
Q ss_pred chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV 317 (337)
Q Consensus 238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~ 317 (337)
+|.+|.+++.+++.++..+|.+.+.+.++|.+...+.|++++||.+++++|+.+.+.+|.+...+.+.|.|..+.+|+++
T Consensus 493 ~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~ 572 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 572 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCch
Confidence 99999999999999999998888889999999999999999999999999999999999887778999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 019679 318 DVRFFATQALQSKDQ 332 (337)
Q Consensus 318 ~vr~~a~~al~~l~~ 332 (337)
+||..|+++++.+..
T Consensus 573 ~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 573 DVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999998753
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.6e-40 Score=301.81 Aligned_cols=334 Identities=23% Similarity=0.330 Sum_probs=301.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 81 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~ 81 (337)
|+++.||..++++++.++...+++...+.++|.+.++++|+++.||..++.+++.+++.++++...+.++|.+.++.+|+
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~ 254 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK 254 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC
Confidence 88999999999999999998887666678999999999999999999999999999999998888888999999999999
Q ss_pred cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh----hHHhhHHHHHHHHhc
Q 019679 82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAE 157 (337)
Q Consensus 82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~ 157 (337)
+|.||..++++++.++...|++.....++|.+.++++|+++.||..++.+++.+++..+.+ .+.+.++|.+..+++
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 334 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence 9999999999999999988877767889999999999999999999999999999988765 456889999999999
Q ss_pred CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679 158 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237 (337)
Q Consensus 158 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 237 (337)
|++|.+|..++..++.++..+|.+...+.++|.+..+++|+++.||..++.+++.+...+|.+...+.++|.+...+.|+
T Consensus 335 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~ 414 (588)
T 1b3u_A 335 DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA 414 (588)
T ss_dssp CSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998877788999999999999999999999999999998887766778999999999999
Q ss_pred chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV 317 (337)
Q Consensus 238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~ 317 (337)
+|++|.+++.+++.++..+|.+.+.+.++|.+...+.|+++.||.+++.+++.++..+|++.+.+.++|.|..+.+|+++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~ 494 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH
Confidence 99999999999999988888877777889999999999999999999999999988888776667788888888888888
Q ss_pred cHHHHHHHHHHHHHHhhh
Q 019679 318 DVRFFATQALQSKDQVMM 335 (337)
Q Consensus 318 ~vr~~a~~al~~l~~~~~ 335 (337)
.+|..++.+++.++..++
T Consensus 495 ~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888888888888877654
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.97 E-value=1.6e-28 Score=234.19 Aligned_cols=333 Identities=18% Similarity=0.193 Sum_probs=279.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhhhHhh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCV 74 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-------~~~ll~~l 74 (337)
|+++.||..++++++.++...++. .|++++|.+.+.+.++++.+|..++.+++.+++..+.... ...++|.+
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~~~~-~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l 179 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKF 179 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTT-TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHH
Confidence 678899999999999999987654 4799999999999999999999999999999998876522 45688888
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHH
Q 019679 75 KELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLP 150 (337)
Q Consensus 75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp 150 (337)
.++++|+++.||..++++++.+....+... ..+.+++.+..++.|+++.||..++.++..+++..+.. ...+.+++
T Consensus 180 ~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~ 259 (852)
T 4fdd_A 180 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE 259 (852)
T ss_dssp TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 889999999999999999999887554322 23578899999999999999999999999999875431 22356888
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhC----hhhHHHHHHHHHHHHc-----------cc-----------cchHHHH
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWL-----------KD-----------KVYSIRD 204 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l-----------~d-----------~~~~vr~ 204 (337)
.+....+|.++.+|..+++.+..+++... -..+.+.++|.+++.+ .| .+|.+|.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~ 339 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK 339 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence 88888999999999999999988875321 1224567889998887 44 5678999
Q ss_pred HHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHH
Q 019679 205 AAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKF 282 (337)
Q Consensus 205 ~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~ 282 (337)
++..+++.++..+| +...+.++|.+.+.+.+++|++|.+++.+++.+++..+.. .+.+.++|.+...+.|+++.||.
T Consensus 340 ~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 340 CSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999987 4466789999999999999999999999999999877642 35677999999999999999999
Q ss_pred HHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 283 NVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 283 ~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
+++.+++.+++.+++. .+...+++.|.+.+.|++++||..|+.+|+.+.+..++
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999877642 34567888888888899999999999999999887654
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.95 E-value=2.8e-25 Score=212.34 Aligned_cols=332 Identities=12% Similarity=0.086 Sum_probs=274.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~ 75 (337)
+++..+|..++++++.++....+...|++++|.+.+.+.++ ++.+|..++.++..+++..+++ .....+++.+.
T Consensus 106 ~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~ 185 (861)
T 2bpt_A 106 SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Confidence 56788999999999999998766545799999999999998 9999999999999999876543 34566888888
Q ss_pred HhcCCC--cHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHh-
Q 019679 76 ELSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ- 146 (337)
Q Consensus 76 ~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~- 146 (337)
+.++|+ ++.||..++++++.+...++... ....+++.+.+.+.+.++.+|..++.++..+++..+.. ....
T Consensus 186 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 265 (861)
T 2bpt_A 186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ 265 (861)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 89999999999998776554221 12468888889999999999999999999999876532 2224
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-------------------hhHHHHHHHHHHHHccc-------cch
Q 019679 147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-------------------GFFDDKLGALCMQWLKD-------KVY 200 (337)
Q Consensus 147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~l~d-------~~~ 200 (337)
.+++.+...+.|.+..+|..+++.+..++..... ..+.+.++|.++..+.+ +++
T Consensus 266 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~ 345 (861)
T 2bpt_A 266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDW 345 (861)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 7778888888999999999999999988775310 12346788888888864 457
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCC
Q 019679 201 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRV 277 (337)
Q Consensus 201 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~ 277 (337)
.+|.++..+++.++..+| +...+.+++.+.+.+.+++|.+|.+++.+++.++...+.+ .+.+.++|.+...+.|++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999887 4456778999999999999999999999999999887633 245578999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhcH----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 278 PNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 278 ~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+.||.+++.+++.++..+++ ..+...++|.+...++|+ ++||..+++++..+.+.++
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988764 235677888888888886 9999999999999988765
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.95 E-value=3.6e-26 Score=217.99 Aligned_cols=332 Identities=17% Similarity=0.160 Sum_probs=270.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD 80 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d 80 (337)
.+|.||+.++.+++.++...|+. ..+.++|.+.+.+.|+++.+|.+++.+++.+++..+.. .+...++|.+..+++|
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d 411 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD 411 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999998854 45789999999999999999999999999999876543 3456788999999999
Q ss_pred CcHHHHHHHHHHHHhcCcccChh---hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHH
Q 019679 81 SSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVEL 155 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~ 155 (337)
+++.||..++.+++.++...+++ .....+++.+.+.+.|+++.||..++.+++.+++..+.+ .+.+.+++.+...
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 99999999999999999866532 344678899999999999999999999999999887753 2446788888888
Q ss_pred hcCCchHHHHHHHHHhhHhHhhhChh----hHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHH--HHhhH
Q 019679 156 AEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHI 226 (337)
Q Consensus 156 ~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l 226 (337)
+++.+......++++++.++...|.. .+.+.++|.+. ..+.|.++.+| .++.+++.++..+|... +.+.+
T Consensus 492 l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i 570 (852)
T 4fdd_A 492 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPV 570 (852)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHH
Confidence 87777777777888888888776643 36778888887 45678888886 78999999999987643 23445
Q ss_pred HHHHHHhhc-----------------CcchHHHHHHHHHHHHhccccChHH--H--HhhHHHHHHhhccCCChhHHHHHH
Q 019679 227 VPQVLEMIN-----------------NPHYLYRMTILQAISLLAPVMGSEI--T--CSQLLPVVINASKDRVPNIKFNVA 285 (337)
Q Consensus 227 ~~~l~~~~~-----------------~~~~~vR~~~~~~l~~l~~~~~~~~--~--~~~l~~~l~~~l~d~~~~vr~~a~ 285 (337)
++.+.+.+. .++...|.+++..++.++..+|.+. + .+.+++.+..++.|+.+.||..+.
T Consensus 571 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 571 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 554433332 1245689999999999998888553 2 257899999999999999999999
Q ss_pred HHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 286 KVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 286 ~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
.+++.++..++.. .+...++|.+.+.+++..+.+|..|+++++.++..+|+
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 9999999888764 34467888888888888899999999999999998875
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.95 E-value=1.7e-25 Score=213.82 Aligned_cols=333 Identities=12% Similarity=0.163 Sum_probs=276.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 78 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~ 78 (337)
|.+|.+|..++++++.++..+|... .+.++|.+.+.+.|+++.+|.+++.+++.+++..+++ .+...++|.+.+.+
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l 420 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG
T ss_pred cccCcHHHHHHHHHHHHHHHccHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4579999999999999999998544 5789999999999999999999999999999877644 33456888888899
Q ss_pred CCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---h---hHHhhH
Q 019679 79 SDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSL 148 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l 148 (337)
+|+++.||..++.+++.++..++. ......++|.+.+.+.|+ +.||..++.++..+++..+. + .+.+.+
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~i 499 (861)
T 2bpt_A 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPAL 499 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 999999999999999999987654 234578899999999887 99999999999999988751 2 344667
Q ss_pred HHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc---------------cchHHHHHHHHH
Q 019679 149 LPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD---------------KVYSIRDAAANN 209 (337)
Q Consensus 149 lp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~ 209 (337)
++.+.+.++ |.++.+|..+++.++.++...+... +.+.++|.+++.+.+ ....+|..++.+
T Consensus 500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 579 (861)
T 2bpt_A 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579 (861)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHH
Confidence 888888886 4558999999999999999887653 456677777777653 356789999999
Q ss_pred HHHHHHHhChH--HHHhhHHHHHHHhhcCcch-HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHH
Q 019679 210 VKRLAEEFGPD--WAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV 284 (337)
Q Consensus 210 l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~-~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a 284 (337)
++.+...+|.+ .+.+.+++.+...+++.++ .+|..++.+++.++...|.. .+.+.++|.+...+.++++.+|..+
T Consensus 580 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999988764 2356788999999988777 89999999999998877754 3567899999999999999999999
Q ss_pred HHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCC--ccHHHHHHHHHHHHHHhhhC
Q 019679 285 AKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 285 ~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~al~~l~~~~~~ 336 (337)
+.+++.++..+|.. .+...+++.+...+.+++ +++|..+..+++.++..+|+
T Consensus 660 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 99999999888764 345678888888777654 88999999999999988775
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.95 E-value=2.3e-25 Score=198.19 Aligned_cols=307 Identities=17% Similarity=0.178 Sum_probs=247.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKE 76 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~ 76 (337)
++++.+ +.++.+++.++...+++..|++++|.+.+.+.++ ++.+|..++.+++.+++...++ .+...+++.+.+
T Consensus 101 ~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~ 179 (462)
T 1ibr_B 101 TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ 179 (462)
T ss_dssp CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHH
T ss_pred CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHH
Confidence 344556 7789999999998877555799999999999998 9999999999999999876432 334568888888
Q ss_pred hcCCC--cHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHh-h
Q 019679 77 LSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-S 147 (337)
Q Consensus 77 l~~d~--~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~ 147 (337)
+++|+ ++.||..++++++.+...++... ....+++.+.+.+.+.++.+|..++.++..+++..+.. ...+ .
T Consensus 180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~ 259 (462)
T 1ibr_B 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259 (462)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 79999999999999776544221 22456888888889999999999999999999876532 2335 7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-------------------C-h---hhHHHHHHHHHHHHcc-------c
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-V---GFFDDKLGALCMQWLK-------D 197 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-------------------~-~---~~~~~~l~~~l~~~l~-------d 197 (337)
+++.+....++.+..+|..+++.+..++... . . +.+.+.++|.+++.+. |
T Consensus 260 l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~ 339 (462)
T 1ibr_B 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339 (462)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccc
Confidence 8888888889999999999999988887652 0 0 1134678888888874 3
Q ss_pred cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhcc
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK 274 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~ 274 (337)
++|.+|.+|..+++.++..+| +...+.++|.+.+.+++++|++|.+++.+++.+++..+.+ ...+.++|.+...+.
T Consensus 340 ~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~ 418 (462)
T 1ibr_B 340 DDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (462)
T ss_dssp TCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred ccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 467999999999999999998 5567789999999999999999999999999999876532 245679999999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHh
Q 019679 275 DRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVE 310 (337)
Q Consensus 275 d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~ 310 (337)
|+++.||.+|+.+|+.+++.+++. .+...+++.|..
T Consensus 419 d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 999999999999999999988763 233445555544
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.95 E-value=1.8e-24 Score=207.14 Aligned_cols=331 Identities=16% Similarity=0.145 Sum_probs=270.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKE 76 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~ 76 (337)
++++.+ +.++++++.++...++...|++++|.+.+.+.++ ++.+|..++.++..+++.+.++. ....+++.+.+
T Consensus 101 ~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~ 179 (876)
T 1qgr_A 101 TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ 179 (876)
T ss_dssp TCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH
T ss_pred CCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHH
Confidence 344566 8889999999998777556899999999999998 99999999999999998876542 34557777888
Q ss_pred hcCCC--cHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHh-h
Q 019679 77 LSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-S 147 (337)
Q Consensus 77 l~~d~--~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~ 147 (337)
.++++ ++.+|..++++++.+...++... ....+++.+.+.+.+.++.+|..++.++..+++..+.. .... .
T Consensus 180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 259 (876)
T 1qgr_A 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259 (876)
T ss_dssp HHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTT
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88877 79999999999999887655321 12357888888899999999999999999999876532 2234 7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--------------------hh---hHHHHHHHHHHHHcc-------c
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------------------VG---FFDDKLGALCMQWLK-------D 197 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------------------~~---~~~~~l~~~l~~~l~-------d 197 (337)
+++.+.....+.+..+|..+++.+..+++... .. ...+.++|.+++.+. |
T Consensus 260 l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~ 339 (876)
T 1qgr_A 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccc
Confidence 88888888889999999999999888876420 00 123678888888875 4
Q ss_pred cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhcc
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK 274 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~ 274 (337)
++|.+|.++..+++.++..+|. ...+.++|.+...+.|++|++|.+++.+++.++...+.+ .+...++|.+...+.
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~ 418 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999998874 456778999999999999999999999999999888743 345678999999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhcH----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 275 DRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 275 d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
|+++.||.+++.+++.+++.+++ ..+...+++.+...++|+ ++||..+++++..+...++
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988764 234577888888888885 8999999999999998765
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.94 E-value=1.4e-25 Score=221.59 Aligned_cols=332 Identities=14% Similarity=0.139 Sum_probs=268.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--------HHHHhhhHh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQHILPC 73 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~~~~~ll~~ 73 (337)
|++|.||+.++.+++.++..+++ ...+.+++.+.+.+.|+++.+|.+++.+++.++..+++. .+.+.++|.
T Consensus 59 d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~ 137 (1230)
T 1u6g_C 59 DKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGR 137 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH
Confidence 78999999999999999987765 335679999999999999999999999999999988865 256789999
Q ss_pred hHHhcCC-CcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679 74 VKELSSD-SSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 150 (337)
Q Consensus 74 l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp 150 (337)
+...++| +++.+|..++.+++.+++..|+.. ..+.+++.+...+.|+++.||..++.+++.++...+.+. .+.++|
T Consensus 138 L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~ 216 (1230)
T 1u6g_C 138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIE 216 (1230)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHH
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHH
Confidence 9998884 889999999999999886555422 347789999999999999999999999999998877554 356777
Q ss_pred HHHHHhcCC-chHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhh
Q 019679 151 AIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQH 225 (337)
Q Consensus 151 ~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~ 225 (337)
.+.+.+.+. ++.+|..++++++.++...|... +.+.++|.+...+.|+++.||+.++.+++.++..++.+ .+.+.
T Consensus 217 ~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~ 296 (1230)
T 1u6g_C 217 HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST 296 (1230)
T ss_dssp HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHH
Confidence 777665433 35788899999999998877532 44679999999999999999999999999999987654 24566
Q ss_pred HHHHHHHhhc-------------------------------------CcchHHHHHHHHHHHHhccccCh--HHHHhhHH
Q 019679 226 IVPQVLEMIN-------------------------------------NPHYLYRMTILQAISLLAPVMGS--EITCSQLL 266 (337)
Q Consensus 226 l~~~l~~~~~-------------------------------------~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~ 266 (337)
++|.+...+. |..|.+|.+++.+++.++...+. ..+.+.++
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~ 376 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS 376 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTH
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 7777655442 12488999999999999886664 45677889
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhhcH---------------------HHHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------------------SVVEKSIRPCLVELSEDPDVDVRFFATQ 325 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---------------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~ 325 (337)
|.+...+.|+++.||.+++.++..+....+. ..+...++|.+.+.++|+++.+|..++.
T Consensus 377 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~ 456 (1230)
T 1u6g_C 377 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN 456 (1230)
T ss_dssp HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999999999999988876532 2334567777777799999999999999
Q ss_pred HHHHHHHhhh
Q 019679 326 ALQSKDQVMM 335 (337)
Q Consensus 326 al~~l~~~~~ 335 (337)
+++.+....+
T Consensus 457 ~L~~l~~~~~ 466 (1230)
T 1u6g_C 457 MLTELVNVLP 466 (1230)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHHch
Confidence 9999887643
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.94 E-value=2.8e-24 Score=212.39 Aligned_cols=331 Identities=14% Similarity=0.131 Sum_probs=266.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcC-
Q 019679 5 WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS- 79 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~- 79 (337)
+.+|..++++++.++...|... ..+.++|.+.+.+.|+++++|..++.+++.+++.++.+ .+...++|.+.+.+.
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCC
Confidence 4677788888888888776532 24679999999999999999999999999999987653 345556666544332
Q ss_pred ------------------------------------CCcHHHHHHHHHHHHhcCcccCh--hhHHhhhHHHHHHhhcCCC
Q 019679 80 ------------------------------------DSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEF 121 (337)
Q Consensus 80 ------------------------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~ 121 (337)
|.+|.||.+++.+++.++...++ ......++|.+...+.|.+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 23578999999999999887664 3455788999999999999
Q ss_pred hhHHHHHHHhHHHhHhhhch---------------------hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679 122 PDVRLNIISKLDQVNQVIGI---------------------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 122 ~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
+.||..++.++..+.+..+. +.+.+.++|.+.+.++|++|.+|..++..++.++..++.
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh
Confidence 99999999999998876542 234466788888889999999999999999999887643
Q ss_pred --hhHHHHHHHHHHHHccccch--HHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679 181 --GFFDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLA 253 (337)
Q Consensus 181 --~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~ 253 (337)
..+.+.++|.+...++|+++ .+|..++..++.+....|++. +.+.++|.+...+.|+++++|..++.+++.++
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 23678899999999999875 999999999999988777663 46679999999999999999999999999988
Q ss_pred cccCh---------HHHHhhHHHHHHhhc--cCCChhHHHHHHHHHHHHhhhhcHH------------------------
Q 019679 254 PVMGS---------EITCSQLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQS------------------------ 298 (337)
Q Consensus 254 ~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~~~------------------------ 298 (337)
+.+|. ..+.+.++|.+...+ .|.++++|.+++.+++.++...|..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~ 627 (1230)
T 1u6g_C 548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 627 (1230)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHH
T ss_pred HHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHH
Confidence 76654 356788999999998 7888999999999999998776642
Q ss_pred ------------------HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 299 ------------------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 299 ------------------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
.+...++|.|...+.|.++.+|..++++++.+....+
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 1123445555556667788899999999999887765
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.94 E-value=3.7e-24 Score=205.04 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=268.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 78 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~ 78 (337)
|.+|.+|+.++.+++.++..++... .+.++|.+.+.+.|+++.+|.+++.+++.+++..+++ .+...++|.+...+
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l 417 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcHhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999988543 5688999999999999999999999999999887744 34566889898999
Q ss_pred CCCcHHHHHHHHHHHHhcCcccChh----hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--------------
Q 019679 79 SDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-------------- 140 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------------- 140 (337)
+|+++.||..++.+++.++...++. .....+++.+...+.|+ +.||..++.++..+++..+
T Consensus 418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 9999999999999999999876642 34578889999999885 9999999999999998765
Q ss_pred --hhhHHhhHHHHHHHHhcCC---chHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc-----------cc---
Q 019679 141 --IDLLSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD-----------KV--- 199 (337)
Q Consensus 141 --~~~~~~~llp~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-----------~~--- 199 (337)
...+.+.++|.+.+.+.+. +..+|..++++++.++...|.+. +...++|.+...+.+ .+
T Consensus 497 ~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~ 576 (876)
T 1qgr_A 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ 576 (876)
T ss_dssp CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHH
Confidence 1234567888888887664 46899999999999999887543 445677777665542 22
Q ss_pred -hHHHHHHHHHHHHHHHHhC-hHH--HHhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChH--HHHhhHHHHHHh
Q 019679 200 -YSIRDAAANNVKRLAEEFG-PDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVIN 271 (337)
Q Consensus 200 -~~vr~~a~~~l~~~~~~~~-~~~--~~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ 271 (337)
+.+|..++.+++.+...+| .+. +.+.++|.+...+++++ +.+|..++.+++.++...|.. .+...++|.+..
T Consensus 577 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 656 (876)
T 1qgr_A 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI 656 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5688999999999998887 432 35678899999988765 589999999999998776643 345678999999
Q ss_pred hccCC-ChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC--CCccHHHHHHHHHHHHHHhhhC
Q 019679 272 ASKDR-VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 272 ~l~d~-~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~l~~~~~~ 336 (337)
.+.+. ++.||..++.+++.++..+|.. .+...+++.+...+.+ .+.++|..+..+++.++..+|+
T Consensus 657 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 657 GLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 99887 8999999999999999888753 3456778888777665 4678999999999999988775
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=2.2e-24 Score=191.88 Aligned_cols=331 Identities=15% Similarity=0.133 Sum_probs=262.2
Q ss_pred CChHHHHHHHHHHHHHHHH---------------hCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 019679 3 KSWRVRYMVANQLYELCEA---------------VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI 67 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~---------------~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~ 67 (337)
.++.+|+.++..+..+.+. ++++ ....+-..+.+.+.++++.+ ..++.+++.++....+....
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~-~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w 126 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDAN-ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW 126 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHH-HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc
Confidence 4688999999999988632 1111 12346667778888888888 88999999999876553233
Q ss_pred HhhhHhhHHhcCCC--cHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCC--ChhHHHHHHHhHHHhHhhhc
Q 019679 68 QHILPCVKELSSDS--SQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIG 140 (337)
Q Consensus 68 ~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~ 140 (337)
..++|.+.+.++++ ++.+|..++.+++.+++.... ......+++.+...+.|. ++.||..+++++..+...++
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888 999999999999999875522 123467889999999998 79999999999998765543
Q ss_pred h----hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHHH-HHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679 141 I----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDD-KLGALCMQWLKDKVYSIRDAAANNVKRL 213 (337)
Q Consensus 141 ~----~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 213 (337)
. ..+.+.+++.+.+...+.++.+|..+++++..++...+.. .+.+ .+++.+...++|.+..||..++..+..+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 2 1233457888888889999999999999999999877543 2345 7888888899999999999999999888
Q ss_pred HHHh------------------C--h---HHHHhhHHHHHHHhhcC-------cchHHHHHHHHHHHHhccccChHHHHh
Q 019679 214 AEEF------------------G--P---DWAMQHIVPQVLEMINN-------PHYLYRMTILQAISLLAPVMGSEITCS 263 (337)
Q Consensus 214 ~~~~------------------~--~---~~~~~~l~~~l~~~~~~-------~~~~vR~~~~~~l~~l~~~~~~~~~~~ 263 (337)
+... . . +.+...++|.+.+.+.+ .+|.+|.++..+++.++..+|. ...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~ 365 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVP 365 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHH
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHH
Confidence 7652 0 0 11235678888777743 4689999999999999998884 5667
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
.++|.+...+.++++.+|.+++.+++.+++...++ .....++|.+..+++|+++.||..|+++|+.+...+++
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999865532 23367889999999999999999999999999988764
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=6.4e-23 Score=181.90 Aligned_cols=332 Identities=14% Similarity=0.077 Sum_probs=260.8
Q ss_pred CCChHHHHHHHHHHHHHHHHh-CCCC---ccc-chHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH---HHHHhhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAV-GPEP---TRS-DVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE---LAIQHILP 72 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~-~~~~---~~~-~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~ 72 (337)
++++.+|..++..+..+.... .+.. ... .++|.+.+.+.++ ++.+|..++.++..++...+.. .....++|
T Consensus 31 s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 110 (450)
T 2jdq_A 31 SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP 110 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH
Confidence 467889999999999987532 2211 123 6899999999988 8999999999999998642221 22356899
Q ss_pred hhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhch---hhHH
Q 019679 73 CVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI---DLLS 145 (337)
Q Consensus 73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~ 145 (337)
.+.++++++++.+|..++.+|++++..... ......++|.+.+++.+ .++.+|..++.+++.++...++ ....
T Consensus 111 ~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 190 (450)
T 2jdq_A 111 IFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 999999999999999999999999874321 11234688999999985 7899999999999999865311 2334
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-- 220 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-- 220 (337)
..++|.+.+++.+.++.+|..++..+..++..... ......++|.++.++.++++.+|..++.+++.++...+..
T Consensus 191 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 270 (450)
T 2jdq_A 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270 (450)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHH
Confidence 67899999999999999999999999998764321 1122357899999999999999999999999987543211
Q ss_pred -HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 221 -WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 221 -~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
.....++|.+..++.++++.+|..++.+++.++..... ......++|.+..++.++++.||..++.+|+.++....
T Consensus 271 ~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 350 (450)
T 2jdq_A 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350 (450)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 12236899999999999999999999999999864321 12235789999999999999999999999999987533
Q ss_pred HH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 297 QS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 297 ~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
++ .....++|.|..+++++++++|..++++|..+...
T Consensus 351 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 351 AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 22 22346899999999999999999999999998864
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=8.1e-23 Score=184.89 Aligned_cols=333 Identities=13% Similarity=0.074 Sum_probs=261.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCC----CcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE---LAIQHILPC 73 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~ 73 (337)
++++.+|..++.++..+....... .....++|.+.+++.++ ++.+|..++.+|+.++...+.. ......+|.
T Consensus 98 s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~ 177 (530)
T 1wa5_B 98 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177 (530)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence 457899999999999887543221 11246899999999997 8999999999999998743221 223457899
Q ss_pred hHHhcCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhh
Q 019679 74 VKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQS 147 (337)
Q Consensus 74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ 147 (337)
+.++++++++.+|..++.+|++++...+ .......++|.+..++.+.++.+|..++.++..++...+ .......
T Consensus 178 Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 257 (530)
T 1wa5_B 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257 (530)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHh
Confidence 9999999999999999999999986422 112235689999999999999999999999999986531 1233467
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HH
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW 221 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~ 221 (337)
++|.+..++.+.++.+|..++.++..++...+. ......++|.+..++.++++.+|..|+.+++.++...+. ..
T Consensus 258 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 337 (530)
T 1wa5_B 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 337 (530)
T ss_dssp GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999999999999999999864321 112235789999999999999999999999998743211 11
Q ss_pred HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-
Q 019679 222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ- 297 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~- 297 (337)
....++|.+..++.++++.+|..++++++.++..... ......++|.+..++.++++.+|..++.+|+.++...++
T Consensus 338 ~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 417 (530)
T 1wa5_B 338 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 417 (530)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 2346899999999999999999999999999864321 112346889999999999999999999999999875433
Q ss_pred -H----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 298 -S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 298 -~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
+ .....++|.|..++.++++++|..+.++|..+....
T Consensus 418 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 2 233458899999999999999999999999987643
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=6.1e-22 Score=175.58 Aligned_cols=328 Identities=13% Similarity=0.070 Sum_probs=253.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHh
Q 019679 4 SWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKEL 77 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l 77 (337)
++.+|..++.++..++..-.. .......+|.+.+++.++++.+|..++.+|+.++...+.. .....++|.+.++
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 789999999999998852111 1122468999999999999999999999999998753221 2234578888888
Q ss_pred cCC-CcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHH
Q 019679 78 SSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLP 150 (337)
Q Consensus 78 ~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp 150 (337)
+++ +++.+|..++.++++++...+ .......++|.+.+++.+.++.+|..++.++..++..... ......++|
T Consensus 158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 237 (450)
T 2jdq_A 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237 (450)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence 885 799999999999999986431 1223367899999999999999999999999999864321 122345889
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHh
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQ 224 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~ 224 (337)
.+.+++.++++.+|..++..++.++...+.. .....++|.+..++.++++.+|..|+.+++.++..... .....
T Consensus 238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999999999999988653221 11235889999999999999999999999998752211 11224
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 298 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-- 298 (337)
.++|.+.+.+.+++..+|..++.+++.++.....+ .....++|.+..++.++++.+|..++.+|..+....+..
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 397 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Confidence 78899999999999999999999999997654332 223468999999999999999999999999998754321
Q ss_pred -------HHHHhh-----hHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679 299 -------VVEKSI-----RPCLVELSEDPDVDVRFFATQALQSKD 331 (337)
Q Consensus 299 -------~~~~~i-----~~~l~~l~~d~~~~vr~~a~~al~~l~ 331 (337)
.+...+ ++.|..+.++++.+|+..|..+|..+-
T Consensus 398 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 398 RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 122233 567778888888999999988887764
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=7.9e-22 Score=178.41 Aligned_cols=328 Identities=9% Similarity=0.054 Sum_probs=256.9
Q ss_pred ChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHHh
Q 019679 4 SWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKEL 77 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~l 77 (337)
++.+|..++.+++.++.... ........+|.+.+++.++++.+|..|+.+|+.++...+. ......++|.+..+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 79999999999999886321 1112245799999999999999999999999999865322 12334588999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hHHhhHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPA 151 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~llp~ 151 (337)
++++++.+|..++.+|++++...+ .......++|.+..++.+.++.+|..++.++..++..... + .....++|.
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 303 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence 999999999999999999986431 2334468899999999999999999999999999864221 1 222468899
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HHh
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQ 224 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~ 224 (337)
+..++.+.++.+|..++..++.++...+. ......++|.+..++.++++.+|..|+.+|+.++... .+. +..
T Consensus 304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~ 382 (530)
T 1wa5_B 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDA 382 (530)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHT
T ss_pred HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHC
Confidence 99999999999999999999998754321 1123468899999999999999999999999987522 221 234
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
.++|.+..++.++++.+|..++.+++.++...+. + .....++|.+..++.++++.||..++.+|..+.......
T Consensus 383 ~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 462 (530)
T 1wa5_B 383 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 462 (530)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 6889999999999999999999999999765433 2 223458999999999999999999999999998754431
Q ss_pred ---------HH-----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 299 ---------VV-----EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 299 ---------~~-----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
.+ ....++.|..+..+++.+|+..|..+|..+-.
T Consensus 463 ~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 463 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred hhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 11 12257788889999999999999998877653
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=1.4e-21 Score=176.79 Aligned_cols=333 Identities=15% Similarity=0.104 Sum_probs=260.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhCHH---HHHHhhhHh
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPE---LAIQHILPC 73 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~ 73 (337)
++++.+|..++.++..++....... ....++|.+.+++.+++ +.+|..|+.+|+.++...+.. ......+|.
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~ 164 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHH
Confidence 4678999999999999876543221 23468999999999887 999999999999998743221 223358899
Q ss_pred hHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhc--hhhHHhh
Q 019679 74 VKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIG--IDLLSQS 147 (337)
Q Consensus 74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ 147 (337)
+..++.++++.+|..++.+|++++...+. .......+|.+..++ .+.++.++..++.++..++.... .......
T Consensus 165 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 244 (528)
T 4b8j_A 165 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 99999999999999999999999853221 112245789999999 67789999999999999987632 2233467
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HH
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW 221 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~ 221 (337)
++|.+..++.+.++.++..++.++..++...... .....++|.+..++.++++.+|..|+.+|+.++...+. ..
T Consensus 245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999999999999999988543221 12235789999999999999999999999999753211 11
Q ss_pred HHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 222 AMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
....++|.+..++.++ ++.+|..++++++.++..... ......++|.+..++.+.++.+|..|+.+|+.++..-.+
T Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence 2345789999999998 899999999999999863221 122346889999999999999999999999999876333
Q ss_pred H----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 298 S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 298 ~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
+ .....+++.|..++.+++++++..+..+|..+....
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 2 123468889999999999999999999999997653
No 18
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.87 E-value=3.8e-20 Score=153.53 Aligned_cols=254 Identities=20% Similarity=0.138 Sum_probs=202.5
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 109 (337)
.-++.+.+.+.|+++.+|..++..|+.++. ...++.+.++++|+++.+|..++.+++.++.... ....+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~---~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---CEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---THHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cchHH
Confidence 347888899999999999999999998863 3466778889999999999999999999874211 23346
Q ss_pred HHHHH-HhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679 110 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 188 (337)
Q Consensus 110 ~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 188 (337)
++.+. .+++|+++.||..++.+++.+....+ ...+.++|.+...++|+++.+|..++..++.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 66666 35789999999999999999875422 1225678889999999999999999999887653 2367
Q ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHH
Q 019679 189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPV 268 (337)
Q Consensus 189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~ 268 (337)
|.+..+++|+++.||..++.+++.+.. . .+..++.+...+.|+++.+|..++.+++.+. ....+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY----D--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC----C--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc----C--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence 888889999999999999999988631 1 2357788889999999999999999999976 2467788
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCC-CCccHHHHHHHHHH
Q 019679 269 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED-PDVDVRFFATQALQ 328 (337)
Q Consensus 269 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~ 328 (337)
+...+.|+. ||..++.+|+.++. ...+|.|..++++ ++++++..+.+++.
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 888888864 99999999999865 3677888887654 57778888877764
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=7.7e-20 Score=165.35 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=240.0
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---HH-HHHHhhhHhhHHhcCCCc-HHHHHHHHHHHHhcCcccCh--
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PE-LAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILGK-- 102 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~-~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~-- 102 (337)
.-+|.+.+.+.++++.+|..|+..|..++.... .. .....++|.+.+++++++ +.+|..++.+|++++.....
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458889999999999999999999999976543 12 344568999999998876 99999999999999873221
Q ss_pred -hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhh
Q 019679 103 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 103 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~ 177 (337)
.......+|.+..++.++++.+|..|+.+|+.++..... .......+|.+..++ .+.++.++..++.++..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 112246899999999999999999999999999864221 112235788888888 678899999999999999876
Q ss_pred hC--hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679 178 LG--VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLL 252 (337)
Q Consensus 178 ~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l 252 (337)
.. .......++|.+..++.++++.++..++.+|+.++...+.. .....++|.+..++.++++.+|..++.+++.+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 42 22244568999999999999999999999999987432111 12336889999999999999999999999999
Q ss_pred ccccCh---HHHHhhHHHHHHhhccCC-ChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679 253 APVMGS---EITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQ 325 (337)
Q Consensus 253 ~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~ 325 (337)
+..... ......++|.+..++.++ ++.+|..|+.+|+.++..... ..+...++|.|..++.+.++++|..|+.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 864322 122346789999999998 899999999999999864322 1234578899999888889999999999
Q ss_pred HHHHHHHh
Q 019679 326 ALQSKDQV 333 (337)
Q Consensus 326 al~~l~~~ 333 (337)
+|+.++..
T Consensus 394 aL~nl~~~ 401 (528)
T 4b8j_A 394 AISNATSG 401 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99999875
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.85 E-value=1e-19 Score=150.92 Aligned_cols=244 Identities=16% Similarity=0.087 Sum_probs=194.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhH-HhcCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK-ELSSD 80 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~-~l~~d 80 (337)
|+++.||..++.+|+.+. .+..+|.+.+++.|+++.+|..++.+|+.++.. ... ...+++.+. .+.+|
T Consensus 34 ~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~-~~~l~~~L~~~~~~d 102 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKC-EDNVFNILNNMALND 102 (280)
T ss_dssp CSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTT-HHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--ccc-chHHHHHHHHHHhcC
Confidence 789999999999999876 256899999999999999999999999887632 111 234566665 46789
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 160 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~ 160 (337)
+++.||..++.+++.++...+. ....+++.+..++.|+++.||..++.+++.+.. +..+|.+.+.++|++
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~ 172 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPN 172 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCC
Confidence 9999999999999998743221 235678999999999999999999999998754 346788888999999
Q ss_pred hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 240 (337)
+.+|..++..++.+... .+..++.+...++|+++.||..++.+|+.+. . +..+|.+...++|++
T Consensus 173 ~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~----~~~~~~L~~~l~d~~-- 236 (280)
T 1oyz_A 173 GDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVLCDELKKNT-- 236 (280)
T ss_dssp HHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHHHHHHTSSS--
T ss_pred HHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C----HhhHHHHHHHhcCcc--
Confidence 99999999999886311 2457888999999999999999999998764 2 347788888888866
Q ss_pred HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC-CChhHHHHHHHHHHH
Q 019679 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQS 290 (337)
Q Consensus 241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~ 290 (337)
+|..++.+++.+.. ...+|.+..++.+ ++++++..++..+..
T Consensus 237 vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 237 VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 88899999999764 3678888888865 457788888777653
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.85 E-value=3.5e-19 Score=162.61 Aligned_cols=314 Identities=15% Similarity=0.123 Sum_probs=158.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
++..+|+.+.-++..++..-+ +. ...+.+.+.+.++|+|+.+|..|+.+++.+. ...+...+.|.+.+++.|++
T Consensus 61 ~~~~~Krl~yl~l~~~~~~~~-e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~ 134 (591)
T 2vgl_B 61 DNLELKKLVYLYLMNYAKSQP-DM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDED 134 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHSH-HH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSC
T ss_pred CCHHHHHHHHHHHHHHcccCc-hH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCC
Confidence 344455555444444443211 00 0112344444444555555555544444332 11222344444444445555
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc----------------------
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------------- 140 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------------- 140 (337)
+.||+.|+.+++++....++......+++.+.+++.|+++.|+.+|+.++..+...-+
T Consensus 135 ~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~ 214 (591)
T 2vgl_B 135 PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC 214 (591)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC
Confidence 5555555555554444332222223444555555555555555555555444443211
Q ss_pred ------------------hhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh--Chhh---HHHHHHHHHHHHccc
Q 019679 141 ------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGF---FDDKLGALCMQWLKD 197 (337)
Q Consensus 141 ------------------~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~---~~~~l~~~l~~~l~d 197 (337)
.+.....+++.+...+++.++.|+..++.++..+.... +++. ....+.+.+..++ +
T Consensus 215 ~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~ 293 (591)
T 2vgl_B 215 TEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S 293 (591)
T ss_dssp CHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T
T ss_pred CchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c
Confidence 01112456677777788889999999999988886543 2222 2345566666555 4
Q ss_pred cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCC
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 277 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 277 (337)
+++++|..++.+++.+....+ +.+.. .+..+....+|+ +.+|..++..+..++..-+ ...+++.+..++.+.+
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p-~~~~~-~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d 366 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRP-EILKQ-EIKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVD 366 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCC-STTTT-CTTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSC
T ss_pred CCccHHHHHHHHHHHHHHhCh-HHHHH-HHHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCC
Confidence 788999999999999887532 21111 111111111222 5666666666655543222 2245555555666666
Q ss_pred hhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 278 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 278 ~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
.++|..++++++.++..+++. ...+++.|..++.+....++..+..++..+.+
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 666666666666666555422 23445555555555555555555555555443
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.83 E-value=1.4e-17 Score=151.99 Aligned_cols=319 Identities=13% Similarity=0.133 Sum_probs=219.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+...|..++..+-.+ ...|.+. +.+++.+.+++++++..+|+.+...+..+++.. ++. ...+.+.+.+.++|+++
T Consensus 26 ~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~-~~l~~n~l~kdL~~~n~ 100 (591)
T 2vgl_B 26 KKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM-AIMAVNSFVKDCEDPNP 100 (591)
T ss_dssp CHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH-HHTTHHHHGGGSSSSSH
T ss_pred CHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH-HHHHHHHHHHHcCCCCH
Confidence 444555555444432 3456654 567888999999999999999999998887752 332 23456778888999999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH-hhHHHHHHHHhcCCchH
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-QSLLPAIVELAEDRHWR 162 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~llp~l~~~~~d~~~~ 162 (337)
.+|..|+.+++.+.. ....+.++|.+.+++.|+++.||+.|+.++..+.+. +++.+. ..++|.+.++++|+++.
T Consensus 101 ~ir~~AL~~L~~i~~----~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~ 175 (591)
T 2vgl_B 101 LIRALAVRTMGCIRV----DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPM 175 (591)
T ss_dssp HHHHHHHHHHHTCCS----GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHH
T ss_pred HHHHHHHHHHHcCCh----HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChh
Confidence 999999999999873 335577889999999999999999999999999884 344332 36889999999999999
Q ss_pred HHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679 163 VRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 239 (337)
Q Consensus 163 vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 239 (337)
|+..++..+..++..-+.. ...+..++.+++.+.+.+++.+...++.++.+... .+.....+++.+..++++.++
T Consensus 176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~ 253 (591)
T 2vgl_B 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANS 253 (591)
T ss_dssp HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTT
T ss_pred HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCCh
Confidence 9999999999988754321 12234455555556666666666666655443311 111234566777777777777
Q ss_pred HHHHHHHHHHHHhcccc--ChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-----------------
Q 019679 240 LYRMTILQAISLLAPVM--GSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----------------- 297 (337)
Q Consensus 240 ~vR~~~~~~l~~l~~~~--~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------------- 297 (337)
.++..++.++..+.... +.+ .....+.+.+..++ ++++++|..++++++.+....+.
T Consensus 254 ~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~ 332 (591)
T 2vgl_B 254 AVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI 332 (591)
T ss_dssp HHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCH
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChH
Confidence 77777777777766433 111 11234444444443 35567777777777666542110
Q ss_pred ---------------HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 298 ---------------SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 298 ---------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+...+.+++.|..+..|.++++|..++++++.++..+.
T Consensus 333 ~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 333 YVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 00123466677777888899999999999999987653
No 23
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.82 E-value=4.7e-18 Score=152.54 Aligned_cols=332 Identities=12% Similarity=0.069 Sum_probs=247.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhh
Q 019679 3 KSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCV 74 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l 74 (337)
.+..++..+++.+..+...-.. .....-++|.|.+++.+ +++.++..|+.+|+.++...+.. ......+|.+
T Consensus 69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L 148 (510)
T 3ul1_B 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 148 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 5677888888888876532211 11223479999999964 56899999999999998753332 2233478999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCCh-----hHHHHHHHhHHHhHhhhch---hh
Q 019679 75 KELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVIGI---DL 143 (337)
Q Consensus 75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~---~~ 143 (337)
.++++++++.||..++.+|++++..... .......++.+..++.+.+. .+...++.++..+...-.+ -.
T Consensus 149 v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 228 (510)
T 3ul1_B 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228 (510)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence 9999999999999999999999753221 12234678899999876543 3566777777777654321 12
Q ss_pred HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh-
Q 019679 144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP- 219 (337)
Q Consensus 144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~- 219 (337)
....++|.+..++.+.+..++..++.++..++...... .....++|.+..++.+++..++..++.+++.++..-+.
T Consensus 229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence 33678999999999999999999999999887643211 11234678899999999999999999999998643211
Q ss_pred --HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 220 --DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 220 --~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
.......++.+..++.+++..+|..++++++.++..... ......++|.+..++.+.+..+|..|+.+|..++..
T Consensus 309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 112345677888889999999999999999999754322 123446899999999999999999999999999865
Q ss_pred hcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 295 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 295 ~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
-..+ ....-+++.|..+++.++++++..+.++|..+.+..
T Consensus 389 ~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 389 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp CCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4433 223457888999999999999999999999887643
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.82 E-value=1.4e-17 Score=150.29 Aligned_cols=332 Identities=12% Similarity=0.071 Sum_probs=247.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhh
Q 019679 3 KSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCV 74 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l 74 (337)
++..++..++..+..+...-.. ......++|.+.+++. ++++.++..|+.+|..++...+.. ......+|.+
T Consensus 88 ~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L 167 (529)
T 3tpo_A 88 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 167 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 4566777777777765432211 1123458999999996 456999999999999998764332 2334478999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCCh-----hHHHHHHHhHHHhHhhhch---hh
Q 019679 75 KELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVIGI---DL 143 (337)
Q Consensus 75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~---~~ 143 (337)
..+++++++.+|..++.+|++++.... ........++.+..++.+.+. .+...++.++..+...-.+ -.
T Consensus 168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 247 (529)
T 3tpo_A 168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 247 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 999999999999999999999975322 112234678899999986543 3566777777777654321 12
Q ss_pred HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh-
Q 019679 144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP- 219 (337)
Q Consensus 144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~- 219 (337)
....++|.+..++.+.+..++..++.++..++...... .....++|.+..++.++++.++..++.+++.++..-+.
T Consensus 248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence 33678999999999999999999999999887643211 11234678899999999999999999999998642211
Q ss_pred --HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 220 --DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 220 --~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
.......++.+..++.+++..+|..++++++.++..... ......++|.+..++.+.+..+|..|+.+|..++..
T Consensus 328 ~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 328 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 112345778899999999999999999999999754321 123446899999999999999999999999999865
Q ss_pred hcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 295 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 295 ~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
-..+ ....-+++.|..++..++++++..+..+|..+.+..
T Consensus 408 ~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 408 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4433 223457888999999999999999999999987643
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.81 E-value=9.4e-18 Score=151.73 Aligned_cols=329 Identities=14% Similarity=0.070 Sum_probs=232.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---------------- 62 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---------------- 62 (337)
++++.+|..++.++..++...+... .....+|.+.+++.++++.+|..++.+|..++...+
T Consensus 112 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~ 191 (529)
T 1jdh_A 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4678899999999999987643321 124689999999999999999988777776653110
Q ss_pred -----------------------------HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHH
Q 019679 63 -----------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 113 (337)
Q Consensus 63 -----------------------------~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 113 (337)
........+|.+..+++++++.++..++.++.+++...+.......++|.+
T Consensus 192 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L 271 (529)
T 1jdh_A 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 271 (529)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHH
Confidence 000112356777778888899999999999999887554433445789999
Q ss_pred HHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHhcC--CchHHHHHHHHHhhHhHhhhCh------hh
Q 019679 114 LSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GF 182 (337)
Q Consensus 114 ~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~------~~ 182 (337)
.+++.+.++++|..++.++..++..-. ........+|.+.+++.+ .++.+|..++..+..++...+. ..
T Consensus 272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i 351 (529)
T 1jdh_A 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 999999999999999999999976421 111223467778877754 3478999999999998754322 11
Q ss_pred HHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHH--------
Q 019679 183 FDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAISL-------- 251 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~-------- 251 (337)
.....+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+.+.+.+.++.+|..++++++.
T Consensus 352 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~ 431 (529)
T 1jdh_A 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431 (529)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc
Confidence 22346788999999876 69999999999998742211 11234678999999888777777765554443
Q ss_pred --------------hccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--HHHHHHhhhHHHHhhhC
Q 019679 252 --------------LAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSE 313 (337)
Q Consensus 252 --------------l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~ 313 (337)
++..... .......+|.+..++.|+++.||..++.+|..++..-. ........++.|..+.+
T Consensus 432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~ 511 (529)
T 1jdh_A 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhc
Confidence 3322110 11233567999999999999999999999999875311 11223457788999999
Q ss_pred CCCccHHHHHHHHHHHH
Q 019679 314 DPDVDVRFFATQALQSK 330 (337)
Q Consensus 314 d~~~~vr~~a~~al~~l 330 (337)
+++++||..|..+|..+
T Consensus 512 ~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 512 SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999999876
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.80 E-value=1.1e-16 Score=147.65 Aligned_cols=330 Identities=12% Similarity=0.061 Sum_probs=249.5
Q ss_pred CChHHHHHHHHHHHHHHHHhC--C--CCc----ccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHH-HHH--Hh
Q 019679 3 KSWRVRYMVANQLYELCEAVG--P--EPT----RSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE-LAI--QH 69 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~--~--~~~----~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~-~~~--~~ 69 (337)
++..+|..++.+|..++...+ + ... ...++|.+.+++.++ ++++|+.++++|..+...-... .+. ..
T Consensus 342 ~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g 421 (810)
T 3now_A 342 KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA 421 (810)
T ss_dssp SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence 456788888888888875433 1 111 236799999999888 8999999999999997643322 222 34
Q ss_pred hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC-----------------------------------hhhHHhhhHHHHH
Q 019679 70 ILPCVKELSSDSSQHVRSALATVIMGMAPILG-----------------------------------KDATIEQLLPIFL 114 (337)
Q Consensus 70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~~~~l~~~l~ 114 (337)
++|.+..+++.+++.++..++.+|++++.... +.......+|.+.
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 78888888888889999999999999987321 1112235799999
Q ss_pred HhhcCCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH-----HHHH
Q 019679 115 SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKL 187 (337)
Q Consensus 115 ~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l 187 (337)
++++..++.+|..|+.++..++..-.. .......+|.|..++.+.+...|..++.++..++....++.. ....
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~a 581 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV 581 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcH
Confidence 999999999999999999999854221 123345889999999988899999999999998866544321 1247
Q ss_pred HHHHHHHcccc-chHHHHHHHHHHHHHHHHhC---hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh-HHHH
Q 019679 188 GALCMQWLKDK-VYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITC 262 (337)
Q Consensus 188 ~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-~~~~ 262 (337)
+|.+.++|..+ +...+..|+.+|..++..-+ ...+....+|.+.+++.+.+..+|..|+++++.++..-.. ..+.
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v 661 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE 661 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 88999999754 44556678889988875321 1122346789999999999999999999999999863221 1122
Q ss_pred --hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--HHHH--HhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 263 --SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVE--KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 263 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
...++.+..++..++..+|.+|+.+|+.++..... +.+. ...+|.|..++.+.+.++|..|+.++.++..
T Consensus 662 ~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999874322 2232 4688899999999999999999999999876
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=3.4e-18 Score=138.54 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=161.8
Q ss_pred CCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcc
Q 019679 23 GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPI 99 (337)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~ 99 (337)
++......+-|.+.+.++|.+|..|..++..|..+++..+. ......+++.+.+.++ |++..||..++.+++.++..
T Consensus 8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34334455666788899999999999999999999887432 1112457888888885 99999999999999999987
Q ss_pred cChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679 100 LGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 100 ~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
+++.. ....++|.+++.+.|+++.||.++..++..++...+. +.++|.+...+++++|.+|..++.+++.+...
T Consensus 88 l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 88 LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 77643 3467999999999999999999999999999887653 56788888999999999999999999998776
Q ss_pred hChh----hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH
Q 019679 178 LGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 221 (337)
Q Consensus 178 ~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 221 (337)
.+++ .+.+.++|.+..+++|+++.||.+|..+++.+...+|.+.
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 6533 3567899999999999999999999999999999998653
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.80 E-value=1.5e-17 Score=150.43 Aligned_cols=329 Identities=12% Similarity=0.036 Sum_probs=232.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--H-HHHhhhHhhHHh
Q 019679 3 KSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--L-AIQHILPCVKEL 77 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~-~~~~ll~~l~~l 77 (337)
++|.+|+.++.++..++..-.. .......+|.+.+++.++++.++..++.+|..++...+.. . .....+|.+.++
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 4789999999999998753211 1112357999999999999999999999999998764322 2 235688999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccC---------------------------------------------hhhHHhhhHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILG---------------------------------------------KDATIEQLLPI 112 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~---------------------------------------------~~~~~~~l~~~ 112 (337)
+.++++.+|..++.++..++.... ........+|.
T Consensus 152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231 (529)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 999999999988888876653110 00011245677
Q ss_pred HHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--h-hhHHHHHHH
Q 019679 113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-GFFDDKLGA 189 (337)
Q Consensus 113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~ 189 (337)
+.+++.+.++.++..++..+..++...+.......++|.+.+++.++++.+|..++..+..++..-. . .......+|
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 311 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Confidence 7777888888888888888888876544333335688999999999999999999999999876421 1 112234677
Q ss_pred HHHHHccc--cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccCh--
Q 019679 190 LCMQWLKD--KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS-- 258 (337)
Q Consensus 190 ~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~-- 258 (337)
.+.+++.+ +++.++..++.+|+.++...+. .......+|.+..++.+++ +.+|..++++++.++..-..
T Consensus 312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~ 391 (529)
T 1jdh_A 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 391 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhH
Confidence 88888865 3479999999999998643221 1123357899999999876 79999999999999853221
Q ss_pred HHHHhhHHHHHHhhccCCChhHHHHHHHHHH----------------------HHhhhhcHH--HHHHhhhHHHHhhhCC
Q 019679 259 EITCSQLLPVVINASKDRVPNIKFNVAKVLQ----------------------SLIPIVDQS--VVEKSIRPCLVELSED 314 (337)
Q Consensus 259 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~----------------------~i~~~~~~~--~~~~~i~~~l~~l~~d 314 (337)
......++|.+..++.+.++.+|..++.+++ .++...... ......+|.|..++.|
T Consensus 392 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~ 471 (529)
T 1jdh_A 392 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcC
Confidence 1223468899999998888888876554444 343321111 2234577889999999
Q ss_pred CCccHHHHHHHHHHHHH
Q 019679 315 PDVDVRFFATQALQSKD 331 (337)
Q Consensus 315 ~~~~vr~~a~~al~~l~ 331 (337)
++++||..+++++..+.
T Consensus 472 ~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 472 PIENIQRVAAGVLCELA 488 (529)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999999998875
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.80 E-value=4.6e-17 Score=150.48 Aligned_cols=331 Identities=14% Similarity=0.073 Sum_probs=237.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------------
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------------- 63 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--------------- 63 (337)
++++.+|..++.+|..++....... .....+|.+.+++.++++.++..++.+|..++...+.
T Consensus 109 ~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv 188 (644)
T 2z6h_A 109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188 (644)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHH
Confidence 4578899999999999987643221 1246799999999998888888888777776631100
Q ss_pred ------------------------------HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHH
Q 019679 64 ------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 113 (337)
Q Consensus 64 ------------------------------~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 113 (337)
.......++.+.+++++++..++..++.++.+++...+.......++|.+
T Consensus 189 ~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~L 268 (644)
T 2z6h_A 189 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 268 (644)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHH
Confidence 00111246677777888888999999999999886554433345789999
Q ss_pred HHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHhcCC--chHHHHHHHHHhhHhHhhhChh------h
Q 019679 114 LSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------F 182 (337)
Q Consensus 114 ~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~------~ 182 (337)
.+++.+.++++|..++.++..+...-. ........+|.+..++.+. .+.+|..++..+..++...+.. .
T Consensus 269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v 348 (644)
T 2z6h_A 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 999999999999999999999876421 1122234678888877653 3789999999999997543321 1
Q ss_pred HHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcch--------------------
Q 019679 183 FDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY-------------------- 239 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~-------------------- 239 (337)
.....+|.+.++|.+++ +.+|+.++.+++.++..-.. ......++|.+.+++.+.++
T Consensus 349 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~ 428 (644)
T 2z6h_A 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428 (644)
T ss_dssp HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence 22357889999999875 79999999999988742111 11234577888888776433
Q ss_pred --HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhC
Q 019679 240 --LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSE 313 (337)
Q Consensus 240 --~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~ 313 (337)
.++..++.++..++...... ......+|.+..++.+.++.+|..++.+|..++..-... ......++.|..++.
T Consensus 429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~ 508 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 508 (644)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHc
Confidence 45556677777666432211 123457899999999999999999999999987542111 112346788889999
Q ss_pred CCCccHHHHHHHHHHHHHH
Q 019679 314 DPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 314 d~~~~vr~~a~~al~~l~~ 332 (337)
+++++||..|+++|..++.
T Consensus 509 ~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 509 SRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp CSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998875
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=1.1e-17 Score=135.52 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=145.2
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhhChh--
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-- 181 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~-- 181 (337)
.+-+.+.+.+.|+++..|.+++..+..+++..+. ..+ ..+++.+...+. |++..+|..++.+++.++..+|..
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344466666677777777777777776665221 112 456677777774 777778888888887777777654
Q ss_pred hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---
Q 019679 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--- 258 (337)
Q Consensus 182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--- 258 (337)
.+.+.++|.++..++|++..||+++..++..+....+ .+.++|.+...+++++|++|..++.+++.+....+.
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 3556789999999999999999999999999887654 346888999999999999999999999997655542
Q ss_pred -HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH
Q 019679 259 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 300 (337)
Q Consensus 259 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~ 300 (337)
..+.+.++|.+..++.|++++||.+|..+++.++..+|.+.+
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 235668999999999999999999999999999999997543
No 31
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.79 E-value=1.1e-17 Score=132.57 Aligned_cols=187 Identities=20% Similarity=0.236 Sum_probs=123.0
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 108 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 108 (337)
+..++.+.+.+.|+++.+|..++..|+.+.. ...+|.+.++++|+++.||..++.+++.+.. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 5567778888888888888888888877654 2455666677778888888888888877763 34
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 188 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 188 (337)
.++.+.+++.|+++.||..++.+++.+.. +..+|.+.++++|+++.+|..++..++.+.. +..+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 55777777788888888888888776643 2345666666677777777777766666532 1244
Q ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679 189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 255 (337)
Q Consensus 189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~ 255 (337)
+.+..+++|+++.||..++.+|+.+. . +..++.+..+++|+++.+|..+..+++.+...
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 55666666666777777766666542 1 23455555566666666666666666665443
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=1.2e-16 Score=144.30 Aligned_cols=329 Identities=11% Similarity=0.113 Sum_probs=244.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~ 75 (337)
+.++.++..++.+|..++..-.. .....-.+|.+.+++.++++.+|..|+.+|+.++...+. .......++.+.
T Consensus 131 ~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll 210 (529)
T 3tpo_A 131 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL 210 (529)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHH
Confidence 45688999999999999853211 112234799999999999999999999999999864222 123344677777
Q ss_pred HhcCCCc-----HHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hH
Q 019679 76 ELSSDSS-----QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LL 144 (337)
Q Consensus 76 ~l~~d~~-----~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~ 144 (337)
.++.+++ ..+...++.++..++.... .......++|.+.+++.+.+++++..++.++..+...... . ..
T Consensus 211 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~ 290 (529)
T 3tpo_A 211 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 290 (529)
T ss_dssp HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 7776543 3456777888887765322 2223467899999999999999999999999998864321 1 12
Q ss_pred HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--
Q 019679 145 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-- 219 (337)
Q Consensus 145 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-- 219 (337)
...++|.+.+++.++++.++..++.+++.++..-.. .......++.+..++.++++.+|..|+.+|+.++..-..
T Consensus 291 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~ 370 (529)
T 3tpo_A 291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 370 (529)
T ss_dssp TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH
Confidence 345889999999999999999999999998753221 112234678889999999999999999999998753211
Q ss_pred -HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 220 -DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 220 -~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
......++|.+..++.+.+..+|..++++++.++.....+. .....++.|..+|..+++.++..++.+|..+.+.
T Consensus 371 ~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 371 QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 11234689999999999999999999999999876544432 2345789999999999999999999999888643
Q ss_pred h---cH-HHHHH-----hhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 295 V---DQ-SVVEK-----SIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 295 ~---~~-~~~~~-----~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
. +. +.+.. -.+..+..|...++.+|+..|.+.|...
T Consensus 451 ~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 451 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred hHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 21 22211 2466778888888999999988887654
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.79 E-value=1.3e-16 Score=143.25 Aligned_cols=303 Identities=12% Similarity=0.103 Sum_probs=228.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--C-HHH-HHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh--
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--N-PEL-AIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD-- 103 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~--~-~~~-~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~-- 103 (337)
-++.+.+.+.+++++.+..|+..+.++.+.- + .+. +..-++|.|.++++ +.++.++..|+.+|.+++..-.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4788889999999999999999999887532 2 233 33448899999886 456899999999999997533211
Q ss_pred -hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCch-----HHHHHHHHHhhHh
Q 019679 104 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHW-----RVRLAIIEYIPLL 174 (337)
Q Consensus 104 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~-----~vr~~~~~~l~~l 174 (337)
......+|.+.+++++++++||..|+.+|+.++..... .......++.+..++.+.+. .+...++..+..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 12346799999999999999999999999999864221 12234567888888765442 3455666677777
Q ss_pred HhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHHhhcCcchHHHHHHHHH
Q 019679 175 ASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMINNPHYLYRMTILQA 248 (337)
Q Consensus 175 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~~~~~~vR~~~~~~ 248 (337)
+..... ......++|.+..++.++++.++..++.+|..++..-.. + .....++|.+.+++.+++..++..++.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 654322 123457899999999999999999999999998753211 1 1234578999999999999999999999
Q ss_pred HHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHH
Q 019679 249 ISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFF 322 (337)
Q Consensus 249 l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~ 322 (337)
++.++..... .......++.+..++.++++.+|..++.+|+.++..-... .....++|.|..++.+.+.++|..
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 377 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHH
Confidence 9998754322 1223457788889999999999999999999997643322 334568899999999999999999
Q ss_pred HHHHHHHHHHh
Q 019679 323 ATQALQSKDQV 333 (337)
Q Consensus 323 a~~al~~l~~~ 333 (337)
|+++|..++..
T Consensus 378 Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 378 AAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999998753
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.78 E-value=2.6e-16 Score=145.26 Aligned_cols=330 Identities=12% Similarity=0.080 Sum_probs=247.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---H-H----HHHHhhhHh
Q 019679 3 KSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---P-E----LAIQHILPC 73 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~-~----~~~~~ll~~ 73 (337)
++..++..++.+++..+..-.. +...+.-+|.+..++.++++.+|..|+.+|.+++.... + . .-...+++.
T Consensus 302 ~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~ 381 (810)
T 3now_A 302 DDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA 381 (810)
T ss_dssp SCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHH
Confidence 4677888999999886643111 11122234999999998899999999999999985321 1 1 123567888
Q ss_pred hHHhcCCC--cHHHHHHHHHHHHhcCcccChhh--HH-hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--------
Q 019679 74 VKELSSDS--SQHVRSALATVIMGMAPILGKDA--TI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-------- 140 (337)
Q Consensus 74 l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------- 140 (337)
+.+++.++ ++.+|+.++++|.+++....... .. ...+|.+.++++..++.+...++..++.+.....
T Consensus 382 l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l 461 (810)
T 3now_A 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM 461 (810)
T ss_dssp HHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH
Confidence 88888777 88999999999999986433211 11 4689999999999999999999999999987431
Q ss_pred ---------------------------hhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHH
Q 019679 141 ---------------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALC 191 (337)
Q Consensus 141 ---------------------------~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l 191 (337)
...+....+|.+..++.++++.+|..++.++..++..-.. .....-.+|.+
T Consensus 462 ~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~L 541 (810)
T 3now_A 462 IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKAL 541 (810)
T ss_dssp GGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHH
T ss_pred HHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 0011234789999999999999999999999999854211 11233478999
Q ss_pred HHHccccchHHHHHHHHHHHHHHHHhChHHH-----HhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccC---hHHHH
Q 019679 192 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMG---SEITC 262 (337)
Q Consensus 192 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~---~~~~~ 262 (337)
+.++.+.+..+|+.|+.+|+.++....++.. ....+|.+.+++.+. +...+..++.++..++..-. .....
T Consensus 542 v~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~ 621 (810)
T 3now_A 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621 (810)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999876554432 134789999998754 44556678999999986532 12234
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHH--HhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVE--KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
...+|.+..++.++++.||.+|+.+++.++..-... .+. ...++.|..++...+.++|..|+.+|..+..
T Consensus 622 aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999998643221 222 2467888889998899999999999999986
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.78 E-value=5.2e-17 Score=152.62 Aligned_cols=331 Identities=11% Similarity=0.052 Sum_probs=241.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC--c-ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP--T-RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~--~-~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~ 75 (337)
++++.||..++.+++.++....... . .+..++.+.+.+.+ +++.+|..|+.+|..++..-... ......+|.+.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALV 240 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHH
Confidence 4678999999999999986432111 1 13578888888864 48999999999999976542211 22345789999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCcccChh--h-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAPILGKD--A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLL 149 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll 149 (337)
++++++++.+|..++.+|.+++...... . .....+|.+.+++.+.+..++..++.++..++.... ........+
T Consensus 241 ~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i 320 (780)
T 2z6g_A 241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 320 (780)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCH
Confidence 9999999999999999999998653321 1 235789999999999999999999999887764211 111223467
Q ss_pred HHHHHHhcCCchH-HHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 150 PAIVELAEDRHWR-VRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 150 p~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
+.+..++.+.+.. .+..++..+..++..... .......+|.+..++.+.+..++..++.++..++...........+
T Consensus 321 ~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 400 (780)
T 2z6g_A 321 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 400 (780)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhH
Confidence 7778887766554 445666777777643211 1122346789999999999999999999999998654332234568
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCC-C-hhHHHHHHHHHHHHhhhhcH----
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDR-V-PNIKFNVAKVLQSLIPIVDQ---- 297 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l~~i~~~~~~---- 297 (337)
+|.+..++.++++.+|..++.+++.++..... .......++.+..++.+. . ..||..++.+|+.++...+.
T Consensus 401 i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~ 480 (780)
T 2z6g_A 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMA 480 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 99999999999999999999999999764321 112345788888888663 2 48999999999999754332
Q ss_pred --HHHHHhhhHHHHhhhCCCCc-cHHHHHHHHHHHHHH
Q 019679 298 --SVVEKSIRPCLVELSEDPDV-DVRFFATQALQSKDQ 332 (337)
Q Consensus 298 --~~~~~~i~~~l~~l~~d~~~-~vr~~a~~al~~l~~ 332 (337)
.......+|.|..++.+++. .+|..|+.+|+.++.
T Consensus 481 ~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 481 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 22335678888888877664 999999999999874
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.78 E-value=5.5e-17 Score=152.49 Aligned_cols=331 Identities=14% Similarity=0.077 Sum_probs=234.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-----------------
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL----------------- 61 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~----------------- 61 (337)
++++.+|..++.+|..++..-.... .....+|.+.+++.+++..++..++.++..++...
T Consensus 245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv 324 (780)
T 2z6g_A 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 324 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence 4568899999999999987643311 12457889999998888888888877776554210
Q ss_pred ---C-------------------------HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHH
Q 019679 62 ---N-------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 113 (337)
Q Consensus 62 ---~-------------------------~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 113 (337)
. .......++|.+..++++.++.++..++.++.+++...........++|.+
T Consensus 325 ~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~L 404 (780)
T 2z6g_A 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 404 (780)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHH
Confidence 0 000112346777778888889999999999999886554433346789999
Q ss_pred HHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcC-Cc-hHHHHHHHHHhhHhHhhhChh------h
Q 019679 114 LSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RH-WRVRLAIIEYIPLLASQLGVG------F 182 (337)
Q Consensus 114 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d-~~-~~vr~~~~~~l~~l~~~~~~~------~ 182 (337)
.+++.+.++.+|..++.+|..+...... .......+|.+.+++.+ .+ ..+|..++.+++.++...+.. .
T Consensus 405 v~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 9999999999999999999999764211 11223467777777765 33 389999999999987543221 1
Q ss_pred HHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcch--------------------
Q 019679 183 FDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY-------------------- 239 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~-------------------- 239 (337)
.....+|.+.+++.+++ +.+|..++.+|+.++..-.. ......++|.+.+++.+.++
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~ 564 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 564 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCC
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccC
Confidence 22346788999998876 49999999999999742111 11134577888887765433
Q ss_pred --HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhC
Q 019679 240 --LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSE 313 (337)
Q Consensus 240 --~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~ 313 (337)
.++..++.+++.++..-... ......+|.|..++.+.++.||..++.+|..++..-... ......++.|..+++
T Consensus 565 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~ 644 (780)
T 2z6g_A 565 MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 644 (780)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc
Confidence 35666777777776321111 113457899999999999999999999999987432111 122347788889999
Q ss_pred CCCccHHHHHHHHHHHHHH
Q 019679 314 DPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 314 d~~~~vr~~a~~al~~l~~ 332 (337)
+++++||..|..+|..+..
T Consensus 645 ~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 645 SRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999875
No 37
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.78 E-value=3e-17 Score=130.14 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=108.0
Q ss_pred hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHH
Q 019679 70 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 149 (337)
Q Consensus 70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 149 (337)
.++.+.++++|+++.+|..++..|+.+.. ...+|.+.+++.|+++.||..++.+++.+.. +..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 44555556667777777777777766653 2445666666667677777777766666542 2344
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 229 (337)
|.+.+.++|+++.+|..++..++.+.. +..++.+..+++|+++.||..++.+|+.+. . +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D----ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C----HHHHHH
Confidence 555566666666666666666655432 123455555666666666666666666542 1 134555
Q ss_pred HHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 230 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
+..++.|+++.+|..++.+++.+.. +..++.+..++.|+++.||.+|..+|+.+...
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 5566666666666666666666532 34455555566666666666666666666543
No 38
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.77 E-value=6.5e-17 Score=127.20 Aligned_cols=187 Identities=20% Similarity=0.246 Sum_probs=139.6
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 107 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 107 (337)
.+...+.+.+.+.|+++.+|..++..|+.+.. ...++.+.++++|+++.+|..++..++.+.. .
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence 35678888888999999999999988887654 2355667777788889999999998888764 2
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHH
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 187 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 187 (337)
..++.+.+++.|+++.||..++.+++.+.. +..+|.+.+.++|+++.+|..++..++.+.. +..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~ 139 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA 139 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence 456788888888888899988888887643 3356667777788888888888888777642 235
Q ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679 188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 254 (337)
Q Consensus 188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~ 254 (337)
++.+..+++|+++.||..++.+|+.+ |. +..++.+..+++|+++.+|..+..+++.+..
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~----~~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEI----GG----ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CS----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 56677778888888888888888776 22 2356666677777778888888887777643
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.77 E-value=1.3e-16 Score=146.13 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=204.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 81 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~ 81 (337)
|+++.+|-.++++++.++. ++ ..+.++|.+.+++.|+++.||+.|+.++..+....+ +. .+.+++.+..++.|+
T Consensus 118 ~~n~~vr~lAL~~L~~i~~---~~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-v~~~~~~l~~lL~D~ 191 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCMGS---SE-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-MEMFLPATKNLLNEK 191 (618)
T ss_dssp CSSSHHHHHHHHHHHHHCC---HH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-GGGGGGGTTTSTTCC
T ss_pred CCCHhHHHHHHHHHHhcCC---HH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-HHHHHHHHHHHhCCC
Confidence 7889999999999998872 22 235679999999999999999999999999988643 32 246888888999999
Q ss_pred cHHHHHHHHHHHHhcCcccChh-hHHhhhHHHHHHhhcC---------------CChhHHHHHHHhHHHhHhhhchhhHH
Q 019679 82 SQHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGIDLLS 145 (337)
Q Consensus 82 ~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~~~~ 145 (337)
++.|+.+++.+++.++..-++. .....++|.+.+.+.+ .++..+..+++.++.+...- + ...
T Consensus 192 d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~-~~~ 269 (618)
T 1w63_A 192 NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-D-DSS 269 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-H-HHH
T ss_pred CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-H-HHH
Confidence 9999999999999998753321 1224556666665543 47888888888888876532 1 122
Q ss_pred hhHHHHHHHHhc------CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679 146 QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 219 (337)
Q Consensus 146 ~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 219 (337)
+.+.+.+..+++ +.+..+...++.++..+.. .........+.+..++.++++++|..|+.+++.++... +
T Consensus 270 ~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p 345 (618)
T 1w63_A 270 EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-H 345 (618)
T ss_dssp HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-H
Confidence 344555555432 2344667777666665422 12223356777888899999999999999999998764 2
Q ss_pred HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 220 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 220 ~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
+ ......+.+..++.|++..+|..++..+..++..-.- ..+++.+..++.+.+.++|..++.+++.++..+.+
T Consensus 346 ~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~ 418 (618)
T 1w63_A 346 N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP 418 (618)
T ss_dssp H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC
T ss_pred H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc
Confidence 3 3445677888899999999999999999998764332 34566666777778899999999999999987643
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.77 E-value=3.8e-17 Score=128.51 Aligned_cols=187 Identities=16% Similarity=0.227 Sum_probs=136.6
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHH
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 186 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 186 (337)
....+.++++++|+++.+|..++..++.+.. +..+|.+.+.++|+++.+|..++..++.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 3556777788888888888888888776643 2355667777778888888888877776532 12
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL 266 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 266 (337)
.++.+...+.|+++.||..++.+|+.+. . ...++.+...+.|+++.+|..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIG----D----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC----c----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 4566777788888888888888887653 1 2366777777888888888888888888653 3566
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
+.+..++.|+++.||.+++.+|+.+.. ....+.|..+++|+++.||..|.++|+.+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 778888888888888888888888743 35666677777888888888888888876543
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.77 E-value=1.9e-16 Score=146.33 Aligned_cols=331 Identities=11% Similarity=0.039 Sum_probs=244.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~ 75 (337)
|+++.+|..++.+++.++....... .....++.+.+.+.+ +++++|..++.+|..++..-... ......+|.+.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv 104 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV 104 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHH
Confidence 5789999999999999997543211 112568888888865 48999999999999877542211 12234788899
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL 149 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll 149 (337)
++++++++.+|..++.+|.+++..... .......+|.+.+++.+.++.++..++.+|..++..... .......+
T Consensus 105 ~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v 184 (644)
T 2z6h_A 105 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184 (644)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCCh
Confidence 999999999999999999999865322 112367899999999999999999999999888753211 11234567
Q ss_pred HHHHHHhcCCc-hHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 150 PAIVELAEDRH-WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 150 p~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
|.+..++.+.+ ..++..++..+..++..... .......++.+..++++++..++..++.+|..++............
T Consensus 185 ~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 264 (644)
T 2z6h_A 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 264 (644)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 88888876654 56777788888777643221 1122347888999999999999999999999997654322234568
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccC---hHHHHhhHHHHHHhhccCC--ChhHHHHHHHHHHHHhhhhcHH---
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--- 298 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~--- 298 (337)
+|.+..++.+.++.+|..++.++..++..-. ........++.+..++.+. .+.||..++.+|+.++...+..
T Consensus 265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 344 (644)
T 2z6h_A 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHH
Confidence 9999999999999999999999999976421 1122345788888888763 3799999999999997543321
Q ss_pred ---HHHHhhhHHHHhhhCCCC-ccHHHHHHHHHHHHHH
Q 019679 299 ---VVEKSIRPCLVELSEDPD-VDVRFFATQALQSKDQ 332 (337)
Q Consensus 299 ---~~~~~i~~~l~~l~~d~~-~~vr~~a~~al~~l~~ 332 (337)
......+|.|..++.+++ +.+|..++.+|+.++.
T Consensus 345 q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 233467888888888765 6999999999998864
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.72 E-value=1.6e-15 Score=139.03 Aligned_cols=298 Identities=11% Similarity=0.031 Sum_probs=189.6
Q ss_pred hCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679 22 VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 101 (337)
.|.+. +...+.+.+++.+++.+.|+.+...+..+++. .++ ..-.+...+.+-++|+++.+|..|+.+++.+..
T Consensus 64 ~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 64 LGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQD-VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---
T ss_pred cCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcH-HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---
Confidence 34443 45677777788888888888887777766553 222 223455667777788888888888888888873
Q ss_pred hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-
Q 019679 102 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV- 180 (337)
Q Consensus 102 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 180 (337)
....+.++|.+.+++.|+++.||+.|+.++..+.... ++. .+.+++.+.+++.|+++.|+..++..+..++..-+.
T Consensus 137 -~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 137 -SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PEL-MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp -HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGG-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHH-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 3345677888888888888888888888888887753 332 246777777788888888888888877777643211
Q ss_pred hhHHHHHHHHHHHHccc---------------cchHHHHHHHHHHHHHHHHh----------------------------
Q 019679 181 GFFDDKLGALCMQWLKD---------------KVYSIRDAAANNVKRLAEEF---------------------------- 217 (337)
Q Consensus 181 ~~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~~~~~~---------------------------- 217 (337)
......++|.+.+.|.+ .+++.+...++.++.+...-
T Consensus 214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 01122334444433332 24444444445444433210
Q ss_pred -----------Ch-HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHH
Q 019679 218 -----------GP-DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 285 (337)
Q Consensus 218 -----------~~-~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 285 (337)
+. ........+.+..++.+++..+|..++.+++.++...+ . ......+.++.++.|++..||..++
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHH
Confidence 00 01112244556666666667777777777777765321 1 2234456677777888888888888
Q ss_pred HHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 286 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
..|..++..-.- +.+++.|...+.+.+.++|..++.+++.++..+.
T Consensus 372 elL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 372 ELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp HHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 888888764321 3344555555666788888888888888887654
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.71 E-value=6.1e-15 Score=120.01 Aligned_cols=226 Identities=12% Similarity=0.094 Sum_probs=139.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---hhhH
Q 019679 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 183 (337)
Q Consensus 110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~ 183 (337)
+|.+.+++.+.++++|..++..+..++..... .......+|.+.+++++.+..+|..++..+..++.... ....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34455555555555555555555555433210 11112345555555555555555555555555543210 0111
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--
Q 019679 184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-- 258 (337)
Q Consensus 184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-- 258 (337)
....+|.+..+++++++.+|..++.+|+.++..... .......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 223567777778888888888888888877642110 112335678888888888888888888888888754321
Q ss_pred -HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 259 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 259 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
.......+|.+..++.++++.+|..++.+|..++..-... .....+++.|..+++++++++|..|+.+|..+....
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 1223457888888888888888888888888887532221 223456778888888888888888888888887654
Q ss_pred h
Q 019679 335 M 335 (337)
Q Consensus 335 ~ 335 (337)
+
T Consensus 244 ~ 244 (252)
T 4hxt_A 244 W 244 (252)
T ss_dssp B
T ss_pred C
Confidence 3
No 44
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.71 E-value=3.5e-14 Score=136.97 Aligned_cols=327 Identities=9% Similarity=0.066 Sum_probs=216.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-----HH------HHHhhh-
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----EL------AIQHIL- 71 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-----~~------~~~~ll- 71 (337)
+..+|..++.++..++..-.|+ .|++++|.+.+.++++++..+..++.++..+.+.... +. ......
T Consensus 98 ~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (960)
T 1wa5_C 98 PNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTA 176 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 4789999999999999987774 4799999999999988888999999999999886531 11 111222
Q ss_pred ---HhhHH---hcCCCcH---------HHHHHHHHHHHhcCc-ccChhh--HHhhhHHHHHHhhcCC----------C--
Q 019679 72 ---PCVKE---LSSDSSQ---------HVRSALATVIMGMAP-ILGKDA--TIEQLLPIFLSLLKDE----------F-- 121 (337)
Q Consensus 72 ---~~l~~---l~~d~~~---------~vr~~a~~~l~~l~~-~~~~~~--~~~~l~~~l~~~l~d~----------~-- 121 (337)
..+.. .++++.. .++..+++++..+.. ..+... .....++.+..++... .
T Consensus 177 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~ 256 (960)
T 1wa5_C 177 PFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHA 256 (960)
T ss_dssp HHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccc
Confidence 22222 2444322 233345666655432 122211 1245566666655321 1
Q ss_pred ---hhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhc-----CCchHHHHHHHHHhhHhHhhh------ChhhHHH
Q 019679 122 ---PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQL------GVGFFDD 185 (337)
Q Consensus 122 ---~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~------~~~~~~~ 185 (337)
..+|+.++.++..+.+..+.. .+.+.+++.+.+.+. ..+..++..+++.+..+++.- ....+.+
T Consensus 257 ~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~ 336 (960)
T 1wa5_C 257 SVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMN 336 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHH
Confidence 357889999998888765432 122344454444443 345678888888888776432 1113445
Q ss_pred HHH-HHHHHHcc-----------------------ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc------
Q 019679 186 KLG-ALCMQWLK-----------------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------ 235 (337)
Q Consensus 186 ~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------ 235 (337)
.++ +.++..+. +..+.+|.+|...+..++..++ +.+.+.+++.+.+.+.
T Consensus 337 ~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 337 NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCc
Confidence 555 55555442 1234689999999999999986 5566778888877776
Q ss_pred CcchHHHHHHHHHHHHhcccc-ChH----------HHHhhHHHHHHhhccCC---ChhHHHHHHHHHHHHhhhhcHHHHH
Q 019679 236 NPHYLYRMTILQAISLLAPVM-GSE----------ITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSVVE 301 (337)
Q Consensus 236 ~~~~~vR~~~~~~l~~l~~~~-~~~----------~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~i~~~~~~~~~~ 301 (337)
+++|+.|.+++.+++.++... +.+ .+.+.+...+...+.|+ ++.||.+++.+++++++.+.++ +.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l 494 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QL 494 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HH
Confidence 678999999999999997542 111 12222223344445666 8999999999999999988654 56
Q ss_pred HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
..+++.+...+.|+++.||..|+.||..+...
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 77888888888888899999999999998764
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.71 E-value=6.2e-15 Score=134.77 Aligned_cols=294 Identities=11% Similarity=0.057 Sum_probs=193.0
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhc--CCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDATIEQ 108 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 108 (337)
..+.+.+-++|+|+.+|..|+.+++.+.. ..+.+.+.|.+.+++ .|+++.||+.|+-++.++....++......
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~ 187 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence 35566666677777777777777776632 235567777777777 788888888888888877764432221136
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCC-------------chHHHHHHHHHhhH
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-------------HWRVRLAIIEYIPL 173 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~-------------~~~vr~~~~~~l~~ 173 (337)
+++.+.+++.|+++.|+.+|+..+..+...-+.. .+.+.++..+.+++.+. ++-.+...++.+..
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 7778888888888888888888877776643211 12233444444443221 34566666677666
Q ss_pred hHhhhChhhHHHHHHH---HHHHHccc---------cc--hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679 174 LASQLGVGFFDDKLGA---LCMQWLKD---------KV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 239 (337)
Q Consensus 174 l~~~~~~~~~~~~l~~---~l~~~l~d---------~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 239 (337)
+...-.++ ..+.+.+ .+++.+.+ .+ ..|...+++++-.+. ..........+.+..++.+++.
T Consensus 268 ~~~~~d~~-~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~ 343 (621)
T 2vgl_A 268 YPPPEDPA-VRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET 343 (621)
T ss_dssp SSSCSSHH-HHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred hCCCCCHH-HHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence 65322221 1222222 33322222 12 266666666666543 2233455677888888888889
Q ss_pred HHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCcc
Q 019679 240 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 318 (337)
Q Consensus 240 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~ 318 (337)
.+|..++.++..++...+...+.....+.++.++. |++..||..++..+..++.. ...+.++..|...+.+.+.+
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS 419 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence 99999999999998766432334556677888888 99999999999998888753 22466777777777778999
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 019679 319 VRFFATQALQSKDQVMMS 336 (337)
Q Consensus 319 vr~~a~~al~~l~~~~~~ 336 (337)
+|..++.+++.++..+.+
T Consensus 420 ~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 420 IREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999887653
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.9e-16 Score=126.11 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=157.4
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHH-HHHhhCH----HHHHHhhhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccC-
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTK-ICRILNP----ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG- 101 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~-~~~~~~~----~~~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~- 101 (337)
+.+=+-+.+.+++.+|.-|++++..+.. +++.++. ......++..+.+.+ +|++..||..++++++.+++.++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3444566778899999999999999999 8754321 111134677777777 89999999999999999998776
Q ss_pred hh---hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhH
Q 019679 102 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 175 (337)
Q Consensus 102 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 175 (337)
+. .+...++|.+++.++|..+.||..+..++..+++..++... .+.+++.+...+++++|++|..++.++..++
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33 34467899999999999999999999999999998754211 3578888889999999999999999999999
Q ss_pred hhhCh--h---hHH-HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 176 SQLGV--G---FFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 176 ~~~~~--~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
...+. . .+. +.++|.+.+++.|+++.||.+|..+++.+...+|.+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 88763 2 245 779999999999999999999999999999999875
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1e-15 Score=123.64 Aligned_cols=201 Identities=15% Similarity=0.138 Sum_probs=132.0
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHH-hHhhhch-h--h-HHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhC-
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGI-D--L-LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG- 179 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~-~--~-~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~- 179 (337)
..+-+-+.+.+.++++.-|.+++..+.. +.+.... . . -...++..+.+.+ +|++..+|..++.+++.++..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 4455556667777777777777777777 6653221 1 1 1135666666666 67777777777777777777776
Q ss_pred hh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHh---hHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679 180 VG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ---HIVPQVLEMINNPHYLYRMTILQAISLLA 253 (337)
Q Consensus 180 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~vR~~~~~~l~~l~ 253 (337)
+. .+...++|.++..++|....||+++..++..++...++..... .+++.+...+++++|++|+.++.++..+.
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 43 3445677777777777777777777777777777665532221 56677777777777777777777777777
Q ss_pred cccCh--H---HHH-hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhh
Q 019679 254 PVMGS--E---ITC-SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 311 (337)
Q Consensus 254 ~~~~~--~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l 311 (337)
...+. . .+. ..++|.+.+++.|..++||.+|..+++.++..+|.+ .+.|.+..+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l~~L 234 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTLEHL 234 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHHHHS
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHH
Confidence 66663 2 234 667777777777777777777777777777777743 344444443
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.69 E-value=3.6e-15 Score=121.38 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=164.3
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hh
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DA 104 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~ 104 (337)
-+|.+.+++.++++++|..++.++..++...+.. ......+|.+.++++++++.+|..++.++++++..... ..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3788899999999999999999999998764321 23345789999999999999999999999999864221 11
Q ss_pred HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-
Q 019679 105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV- 180 (337)
Q Consensus 105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 180 (337)
.....+|.+..++.++++.+|..++.++..++..... .......+|.+.+++.+.++.+|..++.++..++.....
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2346899999999999999999999999999853211 122345788888888888888888888888888764221
Q ss_pred --hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH----HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679 181 --GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 254 (337)
Q Consensus 181 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~ 254 (337)
.......+|.+..++.++++.+|..++.+++.++... ++ ......++.+.+++.+++..+|..++.++..++.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 1122347778888888888888888888888776421 11 1123456677777777677777777777777654
Q ss_pred c
Q 019679 255 V 255 (337)
Q Consensus 255 ~ 255 (337)
.
T Consensus 242 ~ 242 (252)
T 4hxt_A 242 G 242 (252)
T ss_dssp T
T ss_pred C
Confidence 3
No 49
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.69 E-value=4.2e-15 Score=121.12 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=171.9
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---h
Q 019679 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---G 181 (337)
Q Consensus 108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~ 181 (337)
.-.+.+.+.+.++++++|..++..+..+...... .......+|.+.++++++++.+|..++..+..++..... .
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3467788888888899999999998765554111 122345788888999888889999999988888753211 1
Q ss_pred hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh
Q 019679 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 258 (337)
Q Consensus 182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~ 258 (337)
......+|.+..+++++++.+|..|+.+|+.++...... ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 122347899999999999999999999999987543211 12345889999999999999999999999999864322
Q ss_pred H---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 259 E---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 259 ~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
. ......+|.+..++.++++.+|..++.+|+.++..-... ......++.|..++.+.++++|..|+.+|..+++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 1 223568999999999999999999999999998533221 2334588889999999999999999999998764
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.68 E-value=1.9e-14 Score=134.82 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=221.5
Q ss_pred HHHHHHHHHhHHHHHHhhC-HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhc
Q 019679 44 AEVRIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLK 118 (337)
Q Consensus 44 ~~vR~~a~~~l~~~~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~ 118 (337)
..-+..++..+..+...-. .......++..+++.+.|.... +.|+..+..+++..+. +.+.-.++|.++..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 105 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG 105 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence 3335566666666544211 1111125677788888887555 9999999999976643 3334457899999999
Q ss_pred CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC-chHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHc
Q 019679 119 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL 195 (337)
Q Consensus 119 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l 195 (337)
|+...||.+|..+...+.+.+.++.. ..++|.+...+.+. .|+.+.+++..+..++...... ...+.++|.+...+
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 184 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM 184 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc
Confidence 99999999999999999999999887 88999998887654 6999999999999999876322 25678999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-hHHHHhhHHHHHHhhcc
Q 019679 196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASK 274 (337)
Q Consensus 196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~ 274 (337)
.|..++|..+|..++..++..+++.. .+..+|.+.+++.+++. +-. ++..++...-.-. ..+....+.|.|...|.
T Consensus 185 ~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~~~-~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~ 261 (986)
T 2iw3_A 185 WDTKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-VPE-TVHLLGATTFVAEVTPATLSIMVPLLSRGLN 261 (986)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-HHH-HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-hHH-HHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence 99999999999999999999888765 45689999999999853 322 2344433211111 23456689999999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHHHhhhC
Q 019679 275 DRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQVMMS 336 (337)
Q Consensus 275 d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~~~~~~ 336 (337)
+....+++.++-.+.++++..... .|..+++|.+.+..+ =.+|++|..+.+|+..+.+..+.
T Consensus 262 ~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 262 ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999887654 566788888888544 46899999999999999887654
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.68 E-value=6.1e-15 Score=120.13 Aligned_cols=224 Identities=14% Similarity=0.118 Sum_probs=166.0
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--- 102 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 102 (337)
+.-++.+.+.+.++++++|..++..+..+.....+. ......+|.+.++++++++.+|..++.+|++++.....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456899999999999999999999998766652211 23345789999999999999999999999999863321
Q ss_pred hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC
Q 019679 103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 179 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 179 (337)
.......+|.+..++.++++.+|..++.++..++...... ......+|.+.++++++++.+|..++..+..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 1122458999999999999999999999999997654322 2234588999999999999999999999998886432
Q ss_pred hh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH----HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679 180 VG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLL 252 (337)
Q Consensus 180 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l 252 (337)
.. ......+|.+.+++.++++.+|..++.+|+.++... ++ ......++.+.+++.+.+..+|..++.++..+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11 122456788888888888899999998888886321 11 11234566666666666666666666666665
Q ss_pred c
Q 019679 253 A 253 (337)
Q Consensus 253 ~ 253 (337)
+
T Consensus 250 ~ 250 (252)
T 4db8_A 250 Q 250 (252)
T ss_dssp C
T ss_pred h
Confidence 4
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.65 E-value=7.5e-14 Score=123.43 Aligned_cols=330 Identities=13% Similarity=0.117 Sum_probs=227.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhH
Q 019679 2 DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVK 75 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~ 75 (337)
.+++.+|..++.++..++..-.+ .......+|.+.+++.++++.++..|+.+|..++...++. ......+|.+.
T Consensus 13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92 (457)
T ss_dssp SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 35788999999999998843222 1122457999999999999999999999999998641111 22344788888
Q ss_pred HhcC-CCcHHHHHHHHHHHHhcCcccC-hhhHHhhhHHHHHHhh--------cC--------CChhHHHHHHHhHHHhHh
Q 019679 76 ELSS-DSSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLL--------KD--------EFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 76 ~l~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l--------~d--------~~~~vr~~a~~~l~~l~~ 137 (337)
+++. ++++.++..++.+|.+++..-. +....+..+|.+.+++ .+ .++.+...|+.+|..++.
T Consensus 93 ~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 93 SLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred HHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 9988 7899999999999999986522 1212237889999999 22 245677799999999987
Q ss_pred hhch-hhHHh--hHHHHHHHHhcC------CchHHHHHHHHHhhHhHhh----------------------------h--
Q 019679 138 VIGI-DLLSQ--SLLPAIVELAED------RHWRVRLAIIEYIPLLASQ----------------------------L-- 178 (337)
Q Consensus 138 ~~~~-~~~~~--~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~----------------------------~-- 178 (337)
.-.. +.+.+ ..+|.+..++.+ .+.+++..++..+..++.. +
T Consensus 173 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (457)
T 1xm9_A 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252 (457)
T ss_dssp SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhc
Confidence 5111 12222 567777766653 3334444444434333210 0
Q ss_pred ----------------------Ch-hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhCh---H----HH-HhhH
Q 019679 179 ----------------------GV-GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP---D----WA-MQHI 226 (337)
Q Consensus 179 ----------------------~~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~---~----~~-~~~l 226 (337)
|. ..+....++.+..+|.+. ++.+++.|+.+|..++..-+. + .+ ....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~ 332 (457)
T 1xm9_A 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332 (457)
T ss_dssp -------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCC
T ss_pred cchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCC
Confidence 00 112345677788888654 589999999999998743221 1 11 1467
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccC-hHHHHhhHHHHHHhhccCCCh------hHHHHHHHHHHHHhhhhcHH-
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS- 298 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~------~vr~~a~~~l~~i~~~~~~~- 298 (337)
+|.+.+++.+.+..+|..+++++..++..-. ........+|.+..+|...++ ++..+++.+|+.+...-...
T Consensus 333 l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~ 412 (457)
T 1xm9_A 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA 412 (457)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred chHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 8999999999999999999999999976432 223345688999999987643 57778888888886543322
Q ss_pred --HHHHhhhHHHHhhhCCC-CccHHHHHHHHHHHHH
Q 019679 299 --VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKD 331 (337)
Q Consensus 299 --~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~l~ 331 (337)
....-.++.|..++... +.+++..|+..|..+.
T Consensus 413 ~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 413 KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 11234678888888877 8899999999988764
No 53
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.64 E-value=8.6e-13 Score=117.99 Aligned_cols=330 Identities=15% Similarity=0.151 Sum_probs=231.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhH
Q 019679 3 KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVK 75 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~ 75 (337)
++..++..++.+|..++..-.+ .....-.+|.|.+++.++++.++..|+.+|..++..-+.+ ......+|.+.
T Consensus 60 ~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV 139 (584)
T 3l6x_A 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALV 139 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHH
Confidence 5678899999999888842211 1122346899999999999999999999999998632222 22334678888
Q ss_pred HhcCC-CcHHHHHHHHHHHHhcCcccC-hhhHHhhhHHHHHHhhc------------------CCChhHHHHHHHhHHHh
Q 019679 76 ELSSD-SSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLLK------------------DEFPDVRLNIISKLDQV 135 (337)
Q Consensus 76 ~l~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~------------------d~~~~vr~~a~~~l~~l 135 (337)
+++.. .+..+++.++.+|.+++..-. +......-+|.+.+++. ..++.|+..|..+|..+
T Consensus 140 ~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NL 219 (584)
T 3l6x_A 140 RLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV 219 (584)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 88775 678899999999999886322 11122445778877651 12579999999999999
Q ss_pred Hhhhc--hhhHH--hhHHHHHHHHhc------CCchHHHHHHHHHhhHhHhhhC--------------------------
Q 019679 136 NQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG-------------------------- 179 (337)
Q Consensus 136 ~~~~~--~~~~~--~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~-------------------------- 179 (337)
+..-. ...+. ..+++.|..+++ +.+......++..|..++....
T Consensus 220 s~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 299 (584)
T 3l6x_A 220 SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPAR 299 (584)
T ss_dssp TSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCC
T ss_pred hcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCch
Confidence 76421 11121 234455555443 3455666766666666553321
Q ss_pred -hh-hHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh-----H-HH-HhhHHHHHHHhhcCcchHHHHHHHHHH
Q 019679 180 -VG-FFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-----D-WA-MQHIVPQVLEMINNPHYLYRMTILQAI 249 (337)
Q Consensus 180 -~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~-----~-~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l 249 (337)
.+ .+.+..++.++.++.+ .++.+++.|+.+|..++..-+. . .+ ....+|.+.+++.+++..++..++.++
T Consensus 300 Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL 379 (584)
T 3l6x_A 300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379 (584)
T ss_dssp GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1234567888888864 5789999999999998642111 1 11 245799999999999999999999999
Q ss_pred HHhccccC-hHHHHhhHHHHHHhhccCC--------ChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhhhCCC--
Q 019679 250 SLLAPVMG-SEITCSQLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDP-- 315 (337)
Q Consensus 250 ~~l~~~~~-~~~~~~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~-- 315 (337)
..++.... ...+....+|.+..+|.+. ..+++..++.+|+.+...-.. .......+|.|..++.+.
T Consensus 380 ~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~ 459 (584)
T 3l6x_A 380 RNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR 459 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSS
T ss_pred HHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCC
Confidence 99986554 3445567899999999776 357888999999988643221 133456888888988875
Q ss_pred CccHHHHHHHHHHHHHH
Q 019679 316 DVDVRFFATQALQSKDQ 332 (337)
Q Consensus 316 ~~~vr~~a~~al~~l~~ 332 (337)
++.++..|+.+|..+..
T Consensus 460 ~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 460 SEKEVRAAALVLQTIWG 476 (584)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 78899999999998864
No 54
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.63 E-value=2.8e-13 Score=123.83 Aligned_cols=314 Identities=13% Similarity=0.031 Sum_probs=221.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
+...|+.++..+-.+ ...|.+. +...+.+.+++++++.+.|+.+.-.+..+++.. ++ ..-.+...+.+-++|+|+
T Consensus 51 ~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e-~~~L~iN~l~kDl~~~n~ 125 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SE-LIRLINNAIKNDLASRNP 125 (621)
T ss_dssp CHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HH-HHHHHHHHHHHHHHSCCH
T ss_pred CHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cH-HHHHHHHHHHHhcCCCCH
Confidence 344555555544433 3357665 467888889999999999999999988887653 22 223456778888899999
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh--cCCChhHHHHHHHhHHHhHhhhchhhHH-hhHHHHHHHHhcCCc
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLS-QSLLPAIVELAEDRH 160 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~llp~l~~~~~d~~ 160 (337)
.+|..|+.+++.+.. ....+.+.|.+.+++ .|.++.||+.|+-++..+.+. .++.+. +.+++.+.+++.|++
T Consensus 126 ~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 126 TFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp HHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSC
T ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCC
Confidence 999999999999975 345678999999999 999999999999999999985 444442 278899999999999
Q ss_pred hHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHcccc-------------chHHHHHHHHHHHHHHHHhChHHHHhh
Q 019679 161 WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDK-------------VYSIRDAAANNVKRLAEEFGPDWAMQH 225 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-------------~~~vr~~a~~~l~~~~~~~~~~~~~~~ 225 (337)
+.|+.+++..+..++..-+.. .+.+.++..+.+++.+. +++.+...++.++.+...-+++ ..+.
T Consensus 201 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~-~~~~ 279 (621)
T 2vgl_A 201 LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA-VRGR 279 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH-HHHH
T ss_pred ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH-HHHH
Confidence 999999999999887653321 13344555555554321 5677877777777654321112 2222
Q ss_pred ---HHHHHHHhhc---------Ccc--hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 226 ---IVPQVLEMIN---------NPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 226 ---l~~~l~~~~~---------~~~--~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
+++.+.+... +.+ ..+...++.++..+. ....+.......+..++.++++++|..++.++..+
T Consensus 280 l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l 356 (621)
T 2vgl_A 280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTL 356 (621)
T ss_dssp HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 3333333221 112 266667777777764 23335556778888889888999999999999999
Q ss_pred hhhhcHHHHHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHH
Q 019679 292 IPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQSKD 331 (337)
Q Consensus 292 ~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~ 331 (337)
....+.........+.+..++. |++..||..+...+..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 357 ASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp TTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 8776522233555666666667 999999999988877665
No 55
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.62 E-value=5.4e-17 Score=129.24 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=143.2
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH
Q 019679 36 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS 115 (337)
Q Consensus 36 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 115 (337)
.+++.|+++.||..++..+ + ...+..+.+|+++.||..++..+ +. +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence 4667999999999999864 1 23577799999999999999753 11 35778
Q ss_pred hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc
Q 019679 116 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 195 (337)
Q Consensus 116 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 195 (337)
+++|+++.||..++..+ ..+ .+..+.+|+++.||..++..+ +. +.+..++
T Consensus 106 ll~D~d~~VR~~aA~~l-------~~~--------~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------CHH--------HHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 89999999999998864 211 234567999999999998743 22 2344678
Q ss_pred cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC
Q 019679 196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 275 (337)
Q Consensus 196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 275 (337)
+|+++.||..++.. .+. +.+..+++|++|.||.+++..+ +. +.+..++.|
T Consensus 156 ~D~d~~VR~~aa~~-------l~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHc-------CCH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence 99999999999886 222 2344678999999999998753 11 456778999
Q ss_pred CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679 276 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 328 (337)
Q Consensus 276 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~ 328 (337)
+++.||.+++..++ .+.|..| +|+++.||..+.++|+
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 99999999998864 2566678 9999999999987764
No 56
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.60 E-value=1.6e-16 Score=126.59 Aligned_cols=182 Identities=19% Similarity=0.264 Sum_probs=138.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 81 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~ 81 (337)
|+++.||+.++..+ + ...+..+++|+++.||..++..+. .+.+..+++|+
T Consensus 61 d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L~---------------~~~L~~ll~D~ 110 (244)
T 1lrv_A 61 DPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRLP---------------REQLSALMFDE 110 (244)
T ss_dssp CSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGGTTTCS
T ss_pred CCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHCC---------------HHHHHHHHcCC
Confidence 88999999999964 1 234667889999999999997642 14677899999
Q ss_pred cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCch
Q 019679 82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 161 (337)
Q Consensus 82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~ 161 (337)
++.||..++..+ . . +.+..+++|+++.||..++..+ +. +.+..+.+|++|
T Consensus 111 d~~VR~~aA~~l---~----~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~~D~d~ 160 (244)
T 1lrv_A 111 DREVRITVADRL---P----L--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMRDEDR 160 (244)
T ss_dssp CHHHHHHHHHHS---C----T--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTTCSCH
T ss_pred CHHHHHHHHHhC---C----H--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHHcCCCH
Confidence 999999999853 1 1 2356778999999999999842 22 123467799999
Q ss_pred HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHH
Q 019679 162 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241 (337)
Q Consensus 162 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 241 (337)
.||..++..+ +. +.+..+++|++|.||..++..+ +. +.+..++.|++|.|
T Consensus 161 ~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~V 210 (244)
T 1lrv_A 161 QVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTV 210 (244)
T ss_dssp HHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHH
T ss_pred HHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHH
Confidence 9999998862 22 3444688999999999998763 22 34666789999999
Q ss_pred HHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289 (337)
Q Consensus 242 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 289 (337)
|..++..++ .+.+..+ .|+++.||.++...|+
T Consensus 211 R~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 211 RLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 999988753 2556566 9999999999987664
No 57
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.59 E-value=1.4e-12 Score=113.94 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=212.1
Q ss_pred cchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHHhhCHHH---HHHhhh----------HhhHHhcCCCc-
Q 019679 29 SDVVPAYVRLLRDNE------------AEVRIAAAGKVTKICRILNPEL---AIQHIL----------PCVKELSSDSS- 82 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~------------~~vR~~a~~~l~~~~~~~~~~~---~~~~ll----------~~l~~l~~d~~- 82 (337)
.-.+|.|.+++.+.+ +++|..|+.+|..++..-+... ....++ +.+.++++..+
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 357899999998632 6999999999999998754431 111222 22223332221
Q ss_pred ----H--HHHH-------HHHHHHHhcCcccCh--hhHHhhhHHHHHHhhc-----------CCChhHHHHHHHhHHHhH
Q 019679 83 ----Q--HVRS-------ALATVIMGMAPILGK--DATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVN 136 (337)
Q Consensus 83 ----~--~vr~-------~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~ 136 (337)
. .||. .|+.+|++++..-.. .......++.+..++. +.++.++..|+.+|..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1665 888999988653111 1122457788888873 134679999999999998
Q ss_pred hhhch--hhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hh-HHHHHHHHHHHH-ccccchHHHHHHH
Q 019679 137 QVIGI--DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAA 207 (337)
Q Consensus 137 ~~~~~--~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~ 207 (337)
..-.. ..+ ....+|.+..++.+.+..++..++..|..++..-+. .. .....+|.++++ ++..+..+++.++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 54321 122 245689999999999999999999999998753111 11 223467888886 5667889999999
Q ss_pred HHHHHHHHHh-Ch--HHH-HhhHHHHHHHhhcCcch----HHHHHHHHHHHHhccc--cChH----HHHhhHHHHHHhhc
Q 019679 208 NNVKRLAEEF-GP--DWA-MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINAS 273 (337)
Q Consensus 208 ~~l~~~~~~~-~~--~~~-~~~l~~~l~~~~~~~~~----~vR~~~~~~l~~l~~~--~~~~----~~~~~l~~~l~~~l 273 (337)
.++..++... +. ... ....+|.+.+++.+.+. .++..++.++..++.. .+.+ ......+|.+..++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 9999988632 11 112 34688999999986543 5888888999888752 1221 12335789999999
Q ss_pred cCCChhHHHHHHHHHHHHhhhh-cHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 274 KDRVPNIKFNVAKVLQSLIPIV-DQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 274 ~d~~~~vr~~a~~~l~~i~~~~-~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
.+.+..++..|+.+|..++..- ... ....-.+|.|..++..++.++|..|+.+|..+...
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998422 111 23345789999999999999999999999999864
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.58 E-value=6.6e-13 Score=117.38 Aligned_cols=299 Identities=13% Similarity=0.110 Sum_probs=209.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhH
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DAT 105 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 105 (337)
+|.+.+++.+++++++..|+.+|..++....+ .......+|.+.++++++++.++..++.+|.+++..-++ ...
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 78888999999999999999999999854332 223345789999999999999999999999999863111 112
Q ss_pred HhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhch-hhHHhhHHHHHHHHh--------cCC--------chHHHHHH
Q 019679 106 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELA--------EDR--------HWRVRLAI 167 (337)
Q Consensus 106 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~--------~d~--------~~~vr~~~ 167 (337)
....+|.+.+++. +.+++++..++.+|..++..-.. ..+.+..+|.+.+++ .+. +..+...+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 3467899999999 77899999999999999876221 223337888888888 222 33455588
Q ss_pred HHHhhHhHhhhChhh---HH--HHHHHHHHHHccc------cchHHHHHHHHHHHHHHH---------------------
Q 019679 168 IEYIPLLASQLGVGF---FD--DKLGALCMQWLKD------KVYSIRDAAANNVKRLAE--------------------- 215 (337)
Q Consensus 168 ~~~l~~l~~~~~~~~---~~--~~l~~~l~~~l~d------~~~~vr~~a~~~l~~~~~--------------------- 215 (337)
+.++..++.. ++. .. +..+|.+..++.+ .+..+++.++..+..++.
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 8888888764 211 11 1466777777764 334455555555554421
Q ss_pred -------Hh------------------------ChHH-HHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccChH---
Q 019679 216 -------EF------------------------GPDW-AMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--- 259 (337)
Q Consensus 216 -------~~------------------------~~~~-~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~--- 259 (337)
.+ |.+. .....++.+..++.+. +..+++++++++..++..-+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 00 0011 1234567777777644 5889999999999998654321
Q ss_pred ----HH-HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCc------cHHHHHHHHH
Q 019679 260 ----IT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDV------DVRFFATQAL 327 (337)
Q Consensus 260 ----~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~------~vr~~a~~al 327 (337)
.+ ....+|.+.+++.+.+..+|..|+.+|..++..-... .+....+|.|..++...++ ++...++.+|
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l 401 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence 11 2467899999999999999999999999998754333 3345688888888776543 5777888888
Q ss_pred HHHHH
Q 019679 328 QSKDQ 332 (337)
Q Consensus 328 ~~l~~ 332 (337)
+.+..
T Consensus 402 ~ni~~ 406 (457)
T 1xm9_A 402 RNLMA 406 (457)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87753
No 59
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.57 E-value=3.2e-12 Score=118.55 Aligned_cols=278 Identities=13% Similarity=0.017 Sum_probs=190.3
Q ss_pred chHHHHHHhcC---CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhc---CC-CcHHHHHHHHHHHHhcCcccCh
Q 019679 30 DVVPAYVRLLR---DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS---SD-SSQHVRSALATVIMGMAPILGK 102 (337)
Q Consensus 30 ~l~~~l~~~~~---d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~---~d-~~~~vr~~a~~~l~~l~~~~~~ 102 (337)
+-+..+..++. ++++.+|..|+.+++-+......+ ....+.+.+..-- .+ ..+.+|..++-.||.+.--.++
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ 470 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence 45777777776 678999999999999987776643 2233444433211 00 0378999999999987654443
Q ss_pred hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
+ ++++.+...+.|.+..+|..++-+++.+.-..+.....+.++..+. ++.+..+|..++..|+.+. +|...
T Consensus 471 e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e 541 (963)
T 4ady_A 471 I----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQE 541 (963)
T ss_dssp H----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGG
T ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChH
Confidence 3 4556666667777788898999999987544454444455555544 4556788988888888763 34443
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 262 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 262 (337)
..+.++.. +..+.++.+|..++.+++--.-..|.....+.++.. +..|.+..+|.+|+.+++.+.-.- +
T Consensus 542 ~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~--~--- 610 (963)
T 4ady_A 542 LADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRD--Y--- 610 (963)
T ss_dssp GGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSS--C---
T ss_pred HHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCC--H---
Confidence 33333333 234789999999999888655555555434434433 345777889999999999876332 1
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
+.+...+..+..+.++.||.+++.+|+.++..-+. ..+++.|..+.+|++..||..|+.||+.+..
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 22223333355678899999999999999754332 4667788889999999999999999998764
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.57 E-value=9.3e-12 Score=111.35 Aligned_cols=319 Identities=13% Similarity=0.060 Sum_probs=216.7
Q ss_pred HHHHHHHHHhC-CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHH
Q 019679 13 NQLYELCEAVG-PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSA 88 (337)
Q Consensus 13 ~~l~~~~~~~~-~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~ 88 (337)
..|..+-+..+ +......-+|.+.+++.++++.++..|+.+|..++...... ......+|.|.+++.++++.++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~ 109 (584)
T 3l6x_A 30 ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109 (584)
T ss_dssp ----------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHH
Confidence 33444433322 33344567999999999999999999999998887532221 223347899999999999999999
Q ss_pred HHHHHHhcCcccChh----hHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhch-hhHHhhHHHHHHHHhc-----
Q 019679 89 LATVIMGMAPILGKD----ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAE----- 157 (337)
Q Consensus 89 a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~~----- 157 (337)
|+.+|.+++..-..+ ......+|.+.+++.+ .+.++++.++.+|-.++..-.. ..+....+|.|.+++.
T Consensus 110 Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg 189 (584)
T 3l6x_A 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSG 189 (584)
T ss_dssp HHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccc
Confidence 999999998632221 1234678999999986 5789999999999888764221 2233445677766541
Q ss_pred -------------CCchHHHHHHHHHhhHhHhhhC--hhhHH--HHHHHHHHHHccc------cchHHHHHHHHHHHHHH
Q 019679 158 -------------DRHWRVRLAIIEYIPLLASQLG--VGFFD--DKLGALCMQWLKD------KVYSIRDAAANNVKRLA 214 (337)
Q Consensus 158 -------------d~~~~vr~~~~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~d------~~~~vr~~a~~~l~~~~ 214 (337)
..+..++..++.+|..++..-. ..... .-+++.++.++++ .+....+.|+.+|..++
T Consensus 190 ~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp CC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 1246899999999988875321 11111 1245566665543 45567788888887765
Q ss_pred HHhC---------------------------hHHH-HhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChH--H---
Q 019679 215 EEFG---------------------------PDWA-MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE--I--- 260 (337)
Q Consensus 215 ~~~~---------------------------~~~~-~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~--~--- 260 (337)
.... .+.+ ....++.++.++. ..+..++++++.+|..++..-+.. .
T Consensus 270 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~ 349 (584)
T 3l6x_A 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS 349 (584)
T ss_dssp TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH
Confidence 3321 0111 1245677778885 456899999999999997543221 1
Q ss_pred --HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCC--------CccHHHHHHHHHHH
Q 019679 261 --TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDP--------DVDVRFFATQALQS 329 (337)
Q Consensus 261 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~--------~~~vr~~a~~al~~ 329 (337)
.....+|.|..++..++..|+..++.+|..++...... .+....+|.|..++... +.+++..|+.+|++
T Consensus 350 ~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 350 ALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp HHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 12356999999999999999999999999998765443 44567888888887765 35788889999887
Q ss_pred HH
Q 019679 330 KD 331 (337)
Q Consensus 330 l~ 331 (337)
+.
T Consensus 430 L~ 431 (584)
T 3l6x_A 430 VI 431 (584)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.56 E-value=2.1e-12 Score=119.74 Aligned_cols=298 Identities=14% Similarity=0.071 Sum_probs=201.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh--------HHHHHHHHHhHHHHHHhhCHHHHHHhhhHhh
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE--------AEVRIAAAGKVTKICRILNPELAIQHILPCV 74 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~--------~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l 74 (337)
.++.+|..++-++|.+....+. +.+..+...+.+++ +.+|..|+..|+.+.-....+. +.+.|
T Consensus 407 ~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L 477 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEAL 477 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHH
Confidence 4678999999999988765543 35666666665544 7899999999997654444443 34445
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679 75 KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 154 (337)
Q Consensus 75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~ 154 (337)
...+.|.+..+|..++.++|.+----|.....+.++..+ ..+.+..+|+.++.+|+.+. +|.+...+.++. .
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~ 549 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--YGRQELADDLIT---K 549 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---H
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---H
Confidence 555566677889899999997633233333344444443 34678899999999999873 333222233333 3
Q ss_pred HhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH-h
Q 019679 155 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-M 233 (337)
Q Consensus 155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~ 233 (337)
+..+.++.+|.+++..++.-.-..|.....+.++.. +.+|.+..||.+|+.+|+.+. +|.. ..++.+.+ +
T Consensus 550 L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~--~g~~----e~v~rlv~~L 620 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVL--LRDY----TTVPRIVQLL 620 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHT--SSSC----SSHHHHTTTG
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhc--cCCH----HHHHHHHHHH
Confidence 345788999999888877655555554433333333 456888899999999999875 2322 23455554 4
Q ss_pred hcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhh
Q 019679 234 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVEL 311 (337)
Q Consensus 234 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l 311 (337)
..+.++.+|..+..++|.++..-+. ..+++.|..+.+|++..||++|+.+|+.++..-.+. .....++..|...
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 4567899999999999999765554 356778888899999999999999999997543222 0124555555565
Q ss_pred hCC--CCccHHHHHHHHHHHH
Q 019679 312 SED--PDVDVRFFATQALQSK 330 (337)
Q Consensus 312 ~~d--~~~~vr~~a~~al~~l 330 (337)
..| .++..|..++-|.|-+
T Consensus 697 ~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHH
Confidence 554 4677888888887755
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.54 E-value=8.2e-13 Score=104.36 Aligned_cols=185 Identities=15% Similarity=0.103 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HH
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW 221 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~ 221 (337)
..|.+..+++++++.+|..++..+..++..-.. .......+|.+.++++++++.+|..|+.+|+.++..... ..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 344455555555555555555555555422111 112224678888888888888888888888887632111 11
Q ss_pred HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679 222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
.....+|.+..++.+++..+|..++.+++.++..... .......+|.+..++.++++.+|..++.+|..++..-...
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 2345788888899888889999999999998753322 1224468899999999989999999999999998653222
Q ss_pred ---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 299 ---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 299 ---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
......++.|..++.+.++++|..|+.+|..+++
T Consensus 173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 2234578888888888899999999999988764
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.53 E-value=1.1e-12 Score=103.58 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=139.7
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-- 102 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-- 102 (337)
.....|.+..++.++++.+|..++.+|..++...... ......+|.+.++++++++.+|..++.++++++.....
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3467889999999999999999999999998543221 23345789999999999999999999999999853321
Q ss_pred -hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh
Q 019679 103 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 178 (337)
Q Consensus 103 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 178 (337)
.......+|.+..++.+.++.+|..++.++..++..... .......+|.+.+++++.+..+|..++.++..++...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 122346889999999999999999999999999863221 1123457888888888888888888888888887642
Q ss_pred Chh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679 179 GVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 214 (337)
Q Consensus 179 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 214 (337)
... ......++.+.+++.++++.+|+.|+.+|..++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 122346777777888888888888888777654
No 64
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.51 E-value=1.1e-10 Score=113.60 Aligned_cols=327 Identities=10% Similarity=0.070 Sum_probs=212.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------------HHH--
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------ELA-- 66 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---------------~~~-- 66 (337)
+..||...+.++..++....|+ .|+++++.+.+.++ .++..+..++..|..+.+.+.. +.+
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~-~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~ 190 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK 190 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 4689999999999999997774 37899999999996 5666778888888777754321 111
Q ss_pred -HHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChhh-HHhhhHHHHHH-hhcCCChhHHHHHHHhHHHhHhhh-ch
Q 019679 67 -IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVI-GI 141 (337)
Q Consensus 67 -~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~-~~ 141 (337)
...+++.+.+.++ ..+..++..+++++..+....+... ....+++.+.+ ++. ++.+|..++.++..++..- ++
T Consensus 191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~ 268 (1049)
T 3m1i_C 191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQ 268 (1049)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCc
Confidence 2223444444443 3457889999999988777665332 22345555552 222 4566666666554444320 00
Q ss_pred ----------------------------------------------------------------------hhHHhhHHHH
Q 019679 142 ----------------------------------------------------------------------DLLSQSLLPA 151 (337)
Q Consensus 142 ----------------------------------------------------------------------~~~~~~llp~ 151 (337)
......+++.
T Consensus 269 ~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 348 (1049)
T 3m1i_C 269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY 348 (1049)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence 0001123344
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhh-----Ch---hhHHHHHHHHHHHHcccc----------------------chH
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQL-----GV---GFFDDKLGALCMQWLKDK----------------------VYS 201 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~---~~~~~~l~~~l~~~l~d~----------------------~~~ 201 (337)
+......++..++..+++.+..+++.. .. ..+...+++.++..+.-+ .+.
T Consensus 349 ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~ 428 (1049)
T 3m1i_C 349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1049)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence 444445556677777777777776621 11 124456667766654210 124
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc--CcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhcc--
Q 019679 202 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK-- 274 (337)
Q Consensus 202 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-- 274 (337)
.|.++..+|..++.. +++...+.+.+.+.+.+. +.+|+.|.+++.+++.++..++.. .+...+++.+..+..
T Consensus 429 ~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 566777778777754 455556667777777775 367999999999999999887754 345667777766432
Q ss_pred ---CCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 275 ---DRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 275 ---d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
|+.+.||..++.+++++++.+... .+...+++.+...+.|+++.||..|+.++..+.+..+
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 456677778999999998776542 4456777777777888899999999999999987643
No 65
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.47 E-value=4.8e-12 Score=122.16 Aligned_cols=327 Identities=11% Similarity=0.036 Sum_probs=198.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC------CChHHHHHHHHHhHHHHHHhh---C--HH------H
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR------DNEAEVRIAAAGKVTKICRIL---N--PE------L 65 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------d~~~~vR~~a~~~l~~~~~~~---~--~~------~ 65 (337)
..|..|+.+...+..++..++ +...+.+++.+.+.+. ++++..|.+|+.+++.+++.. . .. .
T Consensus 373 d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 373 DTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred cccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 446789999999999999987 3334567777777776 678999999999999998642 1 11 1
Q ss_pred HHHhhhHhhHHhcCCC---cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--
Q 019679 66 AIQHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-- 140 (337)
Q Consensus 66 ~~~~ll~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-- 140 (337)
+...+...+...++|+ ++.||..++++++.+++.+.++ ....+++.+.+.+.|+++.||..|+.++..+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESN 530 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence 2222222233334555 8999999999999999987654 457788999999999999999999999999887421
Q ss_pred --------hhhH---HhhHHHHHHHHhcCCc-----hHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc----cc-
Q 019679 141 --------IDLL---SQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL----KD- 197 (337)
Q Consensus 141 --------~~~~---~~~llp~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l----~d- 197 (337)
.+.+ .+.+++.+..+++... ......+.+++..++...+.+. +.+.+++.+...+ ++
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~ 610 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP 610 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 2222 3445555556655431 1133566777777776665432 4445555554443 33
Q ss_pred cchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc-ChHHHHhhHHHHHH--h
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM-GSEITCSQLLPVVI--N 271 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~~~l~~~l~--~ 271 (337)
+++..+..++.+++.++...+++. +.+.++|.+...+..........+...++.+.... +-..+...++|.+. .
T Consensus 611 ~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPN 690 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGG
T ss_pred CCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHH
Confidence 356778788999999988755432 35678888888776544444444555555554322 11113345566666 5
Q ss_pred hccCCChhHHHHHHHHHHHHhhhhcHHHH-HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 272 ASKDRVPNIKFNVAKVLQSLIPIVDQSVV-EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 272 ~l~d~~~~vr~~a~~~l~~i~~~~~~~~~-~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
.+.... .-....+.|..+....+.... .+.++..+..+..++.. ...+...++.++..++
T Consensus 691 ~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~ 751 (960)
T 1wa5_C 691 VWELKG--NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLID 751 (960)
T ss_dssp GGCCTT--THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSC
T ss_pred HhcCCC--CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCC
Confidence 554432 222344555554432221100 02233344444444432 2566777776666543
No 66
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.46 E-value=3.7e-11 Score=105.01 Aligned_cols=289 Identities=13% Similarity=0.067 Sum_probs=201.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcc---cchH----------HHHHHhcCCCh--HH-----HHH-------HHHHhHHH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTR---SDVV----------PAYVRLLRDNE--AE-----VRI-------AAAGKVTK 56 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~---~~l~----------~~l~~~~~d~~--~~-----vR~-------~a~~~l~~ 56 (337)
++.+|..++.++..++..-+..... .-++ +.+.+++.... .+ +|. .|+.+|..
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 4799999999999999766543321 1233 44555555431 12 565 78888888
Q ss_pred HHHhhCHH----HHHHhhhHhhHHhcC-----------CCcHHHHHHHHHHHHhcCcccCh--hhH--HhhhHHHHHHhh
Q 019679 57 ICRILNPE----LAIQHILPCVKELSS-----------DSSQHVRSALATVIMGMAPILGK--DAT--IEQLLPIFLSLL 117 (337)
Q Consensus 57 ~~~~~~~~----~~~~~ll~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l 117 (337)
++.. ++ ......++.+..++. +.++.++..++.+|.+++..-.. ... ....+|.+.+++
T Consensus 175 ls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL 252 (458)
T 3nmz_A 175 LSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 252 (458)
T ss_dssp HTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG
T ss_pred hcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH
Confidence 8543 22 122335666666652 24578999999999999853321 112 245689999999
Q ss_pred cCCChhHHHHHHHhHHHhHhhhch---hhH-HhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhh-C-hhhH--HHHHH
Q 019679 118 KDEFPDVRLNIISKLDQVNQVIGI---DLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G-VGFF--DDKLG 188 (337)
Q Consensus 118 ~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~-~-~~~~--~~~l~ 188 (337)
.+.+++++..++.+|..++..-.. ..+ ....+|.+.++ ....+..++..++..+..++... + +..+ ....+
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal 332 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 332 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcH
Confidence 999999999999999998753111 222 23578888886 45667889999999999988733 1 1122 23578
Q ss_pred HHHHHHccccch----HHHHHHHHHHHHHHHH--hChHH----HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-
Q 019679 189 ALCMQWLKDKVY----SIRDAAANNVKRLAEE--FGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG- 257 (337)
Q Consensus 189 ~~l~~~l~d~~~----~vr~~a~~~l~~~~~~--~~~~~----~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~- 257 (337)
|.+.+++.+... .+++.|+.+|..++.. -+.+. .....+|.+.+++.+.+..++..++.++..++....
T Consensus 333 ~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH
Confidence 999999987654 4899999999988753 12221 123578999999999999999999999999974321
Q ss_pred -h-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 258 -S-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 258 -~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
. .......+|.+..++...+..+|..|+.+|..+...
T Consensus 413 ~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 122346789999999999999999999999999865
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.8e-10 Score=104.88 Aligned_cols=328 Identities=8% Similarity=0.047 Sum_probs=227.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HH--HHhhhHhhHHhcCC
Q 019679 5 WRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LA--IQHILPCVKELSSD 80 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~--~~~ll~~l~~l~~d 80 (337)
..+|..++-.|..+...-+.. .....+.+.+.+++.+++...|+.|++.|..+...-... .+ .+.+++.+.+++++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~ 387 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS 387 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC
Confidence 467888888888877655432 234578999999998877666999999999885432111 11 12245555566653
Q ss_pred -CcHHHHHHHHHHHHhcCcccCh--------------------------h------h---------HHhhhHHHHHHhhc
Q 019679 81 -SSQHVRSALATVIMGMAPILGK--------------------------D------A---------TIEQLLPIFLSLLK 118 (337)
Q Consensus 81 -~~~~vr~~a~~~l~~l~~~~~~--------------------------~------~---------~~~~l~~~l~~~l~ 118 (337)
.+..+-..++..+.++....+. . . ....++|.+..+++
T Consensus 388 ~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~ 467 (778)
T 3opb_A 388 QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMH 467 (778)
T ss_dssp TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGG
T ss_pred CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHc
Confidence 4556778888888877653220 0 0 01347899999999
Q ss_pred CCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchH---HHHHHHHHhhHhHhhhChhhHH-----HHHH
Q 019679 119 DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLG 188 (337)
Q Consensus 119 d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~ 188 (337)
..++.+|..+++++..++..-.. ....+..+|.+..++.+.... +|..++.++..+.....+.... ...+
T Consensus 468 S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI 547 (778)
T 3opb_A 468 NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAI 547 (778)
T ss_dssp GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccch
Confidence 99999999999999999865322 223456788888887665443 8999999999887544332211 1578
Q ss_pred HHHHHHccc-cch-------------HHHHHHHHHHHHHHHHhCh------HHH-H-hhHHHHHHHhhcCcchHHHHHHH
Q 019679 189 ALCMQWLKD-KVY-------------SIRDAAANNVKRLAEEFGP------DWA-M-QHIVPQVLEMINNPHYLYRMTIL 246 (337)
Q Consensus 189 ~~l~~~l~d-~~~-------------~vr~~a~~~l~~~~~~~~~------~~~-~-~~l~~~l~~~~~~~~~~vR~~~~ 246 (337)
|.++++|.. +.. .-+..|+.+|..++..-++ ..+ . ...+|.+.+++.+.+..+|.+|+
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~ 627 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL 627 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHH
Confidence 889999882 221 2277889999998875321 112 3 25889999999999999999999
Q ss_pred HHHHHhccccCh---HHHH---h---hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--HHHH--HhhhHHHHhhhC
Q 019679 247 QAISLLAPVMGS---EITC---S---QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVE--KSIRPCLVELSE 313 (337)
Q Consensus 247 ~~l~~l~~~~~~---~~~~---~---~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~--~~i~~~l~~l~~ 313 (337)
+++..++..-.. +++. + .-++.+..++...+..+|.+|+.+|+.+....+. +.+. ...++.+..++.
T Consensus 628 elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~ 707 (778)
T 3opb_A 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA 707 (778)
T ss_dssp HHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHh
Confidence 999999754321 2221 1 1378899999999999999999999999654332 1111 135556666777
Q ss_pred C--CCccHHHHHHHHHHHHHH
Q 019679 314 D--PDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 314 d--~~~~vr~~a~~al~~l~~ 332 (337)
+ .+.++|..++.++..++.
T Consensus 708 ~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 708 DQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTTCHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 7 789999999999999986
No 68
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.44 E-value=3.5e-12 Score=106.89 Aligned_cols=282 Identities=11% Similarity=0.092 Sum_probs=165.2
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 108 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 108 (337)
..+++.+.+++++++...|+.....+..+++. +++ .. -+...+.+-++|+|+.+|-.|+.+++++.. ....+.
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHH
Confidence 35788888999999999999999999888776 322 22 456677788899999999999999999986 445678
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 188 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 188 (337)
+.+.+.+.+.|.+|.||++|+-+...+... .++.. +.+++.+.+++.|+++.|...++..+..+.+.- . ....+++
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~-~a~~kLv 215 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R-LAVSKMI 215 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H-HHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h-HHHHHHH
Confidence 999999999999999999999999888765 34433 678899999999999999988888777776531 1 1233444
Q ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHH
Q 019679 189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPV 268 (337)
Q Consensus 189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~ 268 (337)
+.+.+. .-.++......++.+..++..- .......+++.+..++++.+..|-..++.++..+... +.. ........
T Consensus 216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~ 291 (355)
T 3tjz_B 216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSV 291 (355)
T ss_dssp HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHH
Confidence 444321 1112333333444444333211 0122456888888899999999999999998887552 222 22334455
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679 269 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327 (337)
Q Consensus 269 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 327 (337)
+..++..+.+++|..|++.|..+....+. .......-+..+..|++..++..|+..|
T Consensus 292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 66677788899999999999999876543 3355677778899999999988887665
No 69
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.44 E-value=4.1e-10 Score=108.96 Aligned_cols=324 Identities=11% Similarity=0.058 Sum_probs=193.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhC-H--------------
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILN-P-------------- 63 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~~~~~~~-~-------------- 63 (337)
.+.||...+.++..+++...++. |+++++.+.+.+++ +++..+..++..|..+.+.+. .
T Consensus 116 ~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l 194 (963)
T 2x19_B 116 SKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL 194 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred CHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence 57899999999999999877755 78999999999875 366678888888888775431 0
Q ss_pred HHHHHhhhHhhHHhcCCCc--HHHHHHHHHHHHhcCcccChhh-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc
Q 019679 64 ELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 140 (337)
Q Consensus 64 ~~~~~~ll~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 140 (337)
....+.+++.+.+.+++.+ ..++..+++++..... .+... ....+++.+.+.+. ++++|..++.++..+.....
T Consensus 195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~ 271 (963)
T 2x19_B 195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPD 271 (963)
T ss_dssp GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccc
Confidence 0112334555555544432 1255555555543332 11100 01233333333332 23344444444333332110
Q ss_pred -------------------------------------------------h--------hhHHhhHHHHHHHHhcC-----
Q 019679 141 -------------------------------------------------I--------DLLSQSLLPAIVELAED----- 158 (337)
Q Consensus 141 -------------------------------------------------~--------~~~~~~llp~l~~~~~d----- 158 (337)
. ......+++.+.....+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 351 (963)
T 2x19_B 272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYP 351 (963)
T ss_dssp GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTT
T ss_pred cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCC
Confidence 0 00112233333333332
Q ss_pred CchHHHHHHHHHhhHhHhhhC-------h------hhHHHHHHHHHHHHcccc--------------c-hHHHHHHHHHH
Q 019679 159 RHWRVRLAIIEYIPLLASQLG-------V------GFFDDKLGALCMQWLKDK--------------V-YSIRDAAANNV 210 (337)
Q Consensus 159 ~~~~vr~~~~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~l~d~--------------~-~~vr~~a~~~l 210 (337)
.++.+...+++.+..+++... + ..+..++++.++..+..+ . ...|..+...+
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L 431 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHH
Confidence 234455555555555554210 0 112334555555544211 0 13467777788
Q ss_pred HHHHHHhChHHHHhhHHHHHHHhh----cCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHH
Q 019679 211 KRLAEEFGPDWAMQHIVPQVLEMI----NNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV 284 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a 284 (337)
..++...+.+ ..+.+++.+.+.+ .+.+|+.|.+++.+++.+++.+... .+...+++.+.. +.++++.||.++
T Consensus 432 ~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~ 509 (963)
T 2x19_B 432 MYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTV 509 (963)
T ss_dssp HHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHH
T ss_pred HHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHH
Confidence 8888777643 4556777777776 6678999999999999999887642 244556664443 354678899999
Q ss_pred HHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 285 AKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 285 ~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+.+++++++.++.. .+...+++.+...+.+ +.|+..|+.++..+.+..+
T Consensus 510 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~ 559 (963)
T 2x19_B 510 MFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK 559 (963)
T ss_dssp HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH
Confidence 99999999877632 4556778877776765 8899999999999987543
No 70
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.44 E-value=3.6e-11 Score=116.41 Aligned_cols=325 Identities=8% Similarity=0.032 Sum_probs=211.4
Q ss_pred hHHHHHHHHHHHHHHHH--hCCCCcccchHHHHHHhc----------------CCChHHHHHHHHHhHHHHHHhhCHH--
Q 019679 5 WRVRYMVANQLYELCEA--VGPEPTRSDVVPAYVRLL----------------RDNEAEVRIAAAGKVTKICRILNPE-- 64 (337)
Q Consensus 5 ~~vR~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~----------------~d~~~~vR~~a~~~l~~~~~~~~~~-- 64 (337)
|.++..+++++...... .+.. ....+++.+.+ + .++++++|..++.++..+...-...
T Consensus 203 ~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~ 280 (971)
T 2x1g_F 203 YSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY 280 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC
T ss_pred hhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc
Confidence 58899999999988874 4434 44567887776 4 1257899999999999998742211
Q ss_pred -HHHHhhhHhhHH-------hcCCCc---HHHHHHHHHHHHhcCcccChh-------------hHHhhhHHHHHHhhc--
Q 019679 65 -LAIQHILPCVKE-------LSSDSS---QHVRSALATVIMGMAPILGKD-------------ATIEQLLPIFLSLLK-- 118 (337)
Q Consensus 65 -~~~~~ll~~l~~-------l~~d~~---~~vr~~a~~~l~~l~~~~~~~-------------~~~~~l~~~l~~~l~-- 118 (337)
.....++|.+.. ..++.+ ..+....++.+..+++..... .....+++.+..+..
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~ 360 (971)
T 2x1g_F 281 PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKP 360 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCC
Confidence 222333333322 223334 256666778777776432111 112345556666553
Q ss_pred ---CCChhHHHHHHHhHHHhHhhh-c------h-------hhHHhhHHHHHHHHhc---CCc------------hHHHHH
Q 019679 119 ---DEFPDVRLNIISKLDQVNQVI-G------I-------DLLSQSLLPAIVELAE---DRH------------WRVRLA 166 (337)
Q Consensus 119 ---d~~~~vr~~a~~~l~~l~~~~-~------~-------~~~~~~llp~l~~~~~---d~~------------~~vr~~ 166 (337)
..+++|+..++..+..+.+.. + . ..+...+++.+..... |.+ ...|..
T Consensus 361 ~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~ 440 (971)
T 2x1g_F 361 GIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD 440 (971)
T ss_dssp SCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH
Confidence 347889999999888876622 1 0 1122334444444331 110 146788
Q ss_pred HHHHhhHhHhhhChhhHHHHHHHHHHHHccc-----cchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhh-cCcc
Q 019679 167 IIEYIPLLASQLGVGFFDDKLGALCMQWLKD-----KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMI-NNPH 238 (337)
Q Consensus 167 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~-~~~~ 238 (337)
+.+.+..++...| +...+.+.+.+.+.+.. .+|..|++++.+++.+++..... ...+.+++.+..+. .|++
T Consensus 441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence 8888888888777 34556677777666654 68999999999999998766432 12344555443333 2568
Q ss_pred hHHHHHHHHHHHHhccccChH-HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC-
Q 019679 239 YLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED- 314 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d- 314 (337)
..+|.+++++++.+++.++.. .+...+++.++..+ | +.|+.+|+.++..+++.++.. .+.+.++..+..+++.
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 999999999999999877632 45677888888888 4 789999999999999887754 3345556666565554
Q ss_pred -CCccHHHHHHHHHHHHHHhhh
Q 019679 315 -PDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 315 -~~~~vr~~a~~al~~l~~~~~ 335 (337)
.+.+.+..+.++++.++...+
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSC
T ss_pred CCChHHHHHHHHHHHHHHHhCC
Confidence 357899999999999987654
No 71
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.44 E-value=8.8e-11 Score=113.68 Aligned_cols=324 Identities=9% Similarity=0.028 Sum_probs=185.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC------hHHHHHHHHHhHHHHHHhhC-----------HHH-
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN------EAEVRIAAAGKVTKICRILN-----------PEL- 65 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~------~~~vR~~a~~~l~~~~~~~~-----------~~~- 65 (337)
...||...+.++..++....+ .|+++++.+.+.++++ ++..+..++..|..+.+.+. .+.
T Consensus 98 ~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l 175 (971)
T 2x1g_F 98 PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEI 175 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHH
Confidence 478999999999999999877 6889999999998764 67788888888887775321 011
Q ss_pred --HHHhhhHhhHHhcCC---C-----cHHHHHHHHHHHHhcCc--ccChhhHHhhhHHHHHHhh----------------
Q 019679 66 --AIQHILPCVKELSSD---S-----SQHVRSALATVIMGMAP--ILGKDATIEQLLPIFLSLL---------------- 117 (337)
Q Consensus 66 --~~~~ll~~l~~l~~d---~-----~~~vr~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~l---------------- 117 (337)
..+.+++.+.+.+++ + ++.++..+++++..+.. ..+.. ....+++.+.. +
T Consensus 176 ~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~ 253 (971)
T 2x1g_F 176 AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCM 253 (971)
T ss_dssp HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCC
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhcccccccccccc
Confidence 112344444333321 1 13677777777765443 22222 22233333332 1
Q ss_pred cCCChhHHHHH----------------------------------------------------HHhHHHhHhhh----c-
Q 019679 118 KDEFPDVRLNI----------------------------------------------------ISKLDQVNQVI----G- 140 (337)
Q Consensus 118 ~d~~~~vr~~a----------------------------------------------------~~~l~~l~~~~----~- 140 (337)
.+.++++|..| ++.+..+++.. .
T Consensus 254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (971)
T 2x1g_F 254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS 333 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223344444 44333333210 0
Q ss_pred --------hhhHHhhHHHHHHHHhcC-----CchHHHHHHHHHhhHhHhhh-C-------h------hhHHHHHHHHHHH
Q 019679 141 --------IDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQL-G-------V------GFFDDKLGALCMQ 193 (337)
Q Consensus 141 --------~~~~~~~llp~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~-~-------~------~~~~~~l~~~l~~ 193 (337)
.......+++.+...... .+..+...+++.+..+++.. + . ..+...+++.+..
T Consensus 334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 413 (971)
T 2x1g_F 334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR 413 (971)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 000112233333333322 34556666666666665421 1 0 1133345555555
Q ss_pred Hcc---cc------------chHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC-----cchHHHHHHHHHHHHhc
Q 019679 194 WLK---DK------------VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-----PHYLYRMTILQAISLLA 253 (337)
Q Consensus 194 ~l~---d~------------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~vR~~~~~~l~~l~ 253 (337)
.+. |. ....|.++...+..++..+| +...+.+++.+.+.+.. ++|+.|++++.+++.++
T Consensus 414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia 492 (971)
T 2x1g_F 414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA 492 (971)
T ss_dssp HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 442 11 12467777788887777666 44556667776666654 68999999999999999
Q ss_pred cccChH--HHHhhHHHHHHhhc-cCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679 254 PVMGSE--ITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQS 329 (337)
Q Consensus 254 ~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 329 (337)
+.+... ...+.+++.+..+. .|+++.||..++.+++++++.++.. .+...+++.+...+ | +.|+..|+.|+..
T Consensus 493 e~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~ 569 (971)
T 2x1g_F 493 EHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKE 569 (971)
T ss_dssp TC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHH
T ss_pred hhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHH
Confidence 887643 24455666444444 2678999999999999999887743 34566777776666 4 7899999999999
Q ss_pred HHHhhh
Q 019679 330 KDQVMM 335 (337)
Q Consensus 330 l~~~~~ 335 (337)
+.+..+
T Consensus 570 l~~~~~ 575 (971)
T 2x1g_F 570 LCRDCQ 575 (971)
T ss_dssp HHHHCH
T ss_pred HHHHHH
Confidence 886543
No 72
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.40 E-value=7.5e-10 Score=106.17 Aligned_cols=329 Identities=10% Similarity=0.057 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCH-----------------H
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNP-----------------E 64 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~-----------------~ 64 (337)
..+.+|...+.++..++....|.. |+..++.+.+.++.++. ..-...+..|..+.+.+.. +
T Consensus 102 ~~~~IrnKL~~~la~l~~~~~p~~-Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd 180 (980)
T 3ibv_A 102 EPAYISNAVQHLLTLLFLQLYPSN-WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKD 180 (980)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCccc-CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHH
Confidence 456799999999999999887765 67888888888864333 2333344445544343210 0
Q ss_pred HH--------HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH-hhhHHHHHHhhcCCChhHHHHHHHhHHHh
Q 019679 65 LA--------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQV 135 (337)
Q Consensus 65 ~~--------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 135 (337)
.+ .+.++..+....+..++.++..++++++....+.+..... ..+++.+.+++.+ +++|.+|+.++..+
T Consensus 181 ~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei 258 (980)
T 3ibv_A 181 AIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEI 258 (980)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHH
Confidence 01 1122223333333467788888999998888876654432 5677878887766 67787777776655
Q ss_pred Hhhhch-h-------------------------------------------------------------hHHhhHHHHHH
Q 019679 136 NQVIGI-D-------------------------------------------------------------LLSQSLLPAIV 153 (337)
Q Consensus 136 ~~~~~~-~-------------------------------------------------------------~~~~~llp~l~ 153 (337)
...-.. + .....++|.+.
T Consensus 259 ~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL 338 (980)
T 3ibv_A 259 VNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLI 338 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHH
T ss_pred HHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHH
Confidence 433110 0 01123444445
Q ss_pred HHhcCCchHHHHHHHHHhhHhHhhh---Ch--------hhHHHHHHHHHHHHccc-------c---------chHHHHHH
Q 019679 154 ELAEDRHWRVRLAIIEYIPLLASQL---GV--------GFFDDKLGALCMQWLKD-------K---------VYSIRDAA 206 (337)
Q Consensus 154 ~~~~d~~~~vr~~~~~~l~~l~~~~---~~--------~~~~~~l~~~l~~~l~d-------~---------~~~vr~~a 206 (337)
....++++.+-..++..+..+.... +. ..+...+++.+...+.- . ..+.|+..
T Consensus 339 ~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l 418 (980)
T 3ibv_A 339 RYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL 418 (980)
T ss_dssp HHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHH
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHH
Confidence 5555555655555555555444332 11 12334455555544421 1 12467666
Q ss_pred HHHHHHHHHHhChHHHHh----hHHHHHHHhhc---CcchHHHHHHHHHHHHhccccChH--------HHHhhHHHHHHh
Q 019679 207 ANNVKRLAEEFGPDWAMQ----HIVPQVLEMIN---NPHYLYRMTILQAISLLAPVMGSE--------ITCSQLLPVVIN 271 (337)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~----~l~~~l~~~~~---~~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~l~~~l~~ 271 (337)
. .+-.....+|++.+.+ .+.+.+.+.+. +.+|+.+++++.+++.+++.+... ...+.+++++..
T Consensus 419 ~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ 497 (980)
T 3ibv_A 419 K-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL 497 (980)
T ss_dssp H-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred H-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence 6 6666666778776666 55666666552 457999999999999999887531 123467788887
Q ss_pred hcc-----CCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHh--hhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 272 ASK-----DRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVE--LSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 272 ~l~-----d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~--l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
++. ++++.||..++.++++.++.+... .+...+++.+.. .+.+++++||..|+.++..+.+..+
T Consensus 498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 765 889999999999999999988642 223344444444 4457888999999999999887654
No 73
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.38 E-value=1.5e-10 Score=98.16 Aligned_cols=253 Identities=13% Similarity=0.055 Sum_probs=177.4
Q ss_pred HHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhcC-----------CCcHHHHHHHHHHHHhcCcccC--hhhH--H
Q 019679 44 AEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSS-----------DSSQHVRSALATVIMGMAPILG--KDAT--I 106 (337)
Q Consensus 44 ~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~~--~~~~--~ 106 (337)
......|+.+|..++..-. ........+|.+..++. ..++.+|..++.+|.+++..-. +... .
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3445566777777764310 01122234555555542 2357899999999999985332 1112 2
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhH-HhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhC--
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLG-- 179 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~-- 179 (337)
...+|.+.+++.+.+++++..++.+|..++..-.. +.+ ....+|.+.++ ....+..++..++..+..++....
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 35699999999999999999999999999763111 222 23568888886 466778899999999998887331
Q ss_pred hhhH--HHHHHHHHHHHccccch----HHHHHHHHHHHHHHHHh--ChHH---H-HhhHHHHHHHhhcCcchHHHHHHHH
Q 019679 180 VGFF--DDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEF--GPDW---A-MQHIVPQVLEMINNPHYLYRMTILQ 247 (337)
Q Consensus 180 ~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~--~~~~---~-~~~l~~~l~~~~~~~~~~vR~~~~~ 247 (337)
+..+ ....+|.+.+++.+.+. .+++.|+.+|..++..+ +.+. + ....+|.+.+++.+.+..++..++.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 1122 24578999999987654 58999999999887531 2221 1 2357899999999999999999999
Q ss_pred HHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 248 AISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 248 ~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
++..++..... .......+|.|..++.+.+..+|..|+.+|..+...-+
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999843211 12234578999999999999999999999999987543
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.38 E-value=3.2e-09 Score=77.99 Aligned_cols=216 Identities=17% Similarity=0.169 Sum_probs=154.3
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhChhhHHH
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDD 185 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 185 (337)
+.++..+.+++.|.-+.|+++|+..+..+.+... +.+ ..++..+..+ -+++....-...+..++.++..-+. ...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence 4566777777777777788888877777776543 211 1222222222 3455555666777777777765332 234
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhH
Q 019679 186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL 265 (337)
Q Consensus 186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 265 (337)
.++|+++.-..-..+..|-....+|+.+.... +. ....++.-+..++.+++..-|.+++.+++.++... . .+..-+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~-~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-F-KYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-H-HHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-c-cccCcc
Confidence 58888888888788899999999999998865 33 35567778888999999999999999999877542 2 245678
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
+|-+..+|.|.+.-||..++.+|..++..-+ .+...+...+ .=++|++..|...+.++|+.+.-.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl-~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRL-EELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHH-HHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999986533 2333344333 346888999999999999987643
No 75
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.38 E-value=7.9e-12 Score=107.39 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=173.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 110 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 110 (337)
+...+..-+-|+.|++|..|+.+|..+.+..+...-.. -..+.+-.+|..++-++..++...++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 67777777789999999999999999988765532110 112225577777777777777655521
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 190 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 190 (337)
.-.-||+.++++++.+ ..++.+ -.++-.+......+.|++|++.+-.+..+...+.. .+.+++.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 1257999999999999 777655 23444444555888999999988877777333332 5789999
Q ss_pred HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChHHHHhhHHHH
Q 019679 191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPV 268 (337)
Q Consensus 191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~ 268 (337)
++..|.|.+..||..|+.+|..++ .++ ..+.++..+++++.+-+ ..---..+..+..+...-......+.++|-
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p~-~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---ITD-SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CSS-THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---chh-hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 999999999999999999999887 222 24456677777766421 111112233333332211111112388999
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679 269 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 328 (337)
Q Consensus 269 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~ 328 (337)
+..++..+..+||.++.+++..+. .. ..+.-.+.+++-+++.+|+..+.++-.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL---~~----~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS---EE----SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC---CH----HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH---hh----hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999998886 11 222233345666788899988887764
No 76
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.36 E-value=3.7e-10 Score=109.30 Aligned_cols=326 Identities=11% Similarity=0.119 Sum_probs=209.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHhc
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELS 78 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l~ 78 (337)
+.+|+.|.+++.+++.++..+..+. ....+++.+.++ .++++.||..++.+++.+.+.+... .+...+++.+...+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 538 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL 538 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 4689999999999999998776533 123455544433 3468889999999999999876532 45566777777777
Q ss_pred CCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcC--CChhHHHHHHHhHHHhHhhhchhh---HHhhHHHH
Q 019679 79 SDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPA 151 (337)
Q Consensus 79 ~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~---~~~~llp~ 151 (337)
++ +.|+..|+.++..+++.++... ..+.++..+..++.. -+...|..++++++.++...+.+. +.+.+++.
T Consensus 539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~ 616 (963)
T 2x19_B 539 GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISP 616 (963)
T ss_dssp TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 66 7899999999999987655332 235566666666664 357899999999999987765322 22344444
Q ss_pred HHHHh----cC-CchHHHH---HHHHHhhHhHhhhCh------------------------hhHHHHHHHHHHHHccc--
Q 019679 152 IVELA----ED-RHWRVRL---AIIEYIPLLASQLGV------------------------GFFDDKLGALCMQWLKD-- 197 (337)
Q Consensus 152 l~~~~----~d-~~~~vr~---~~~~~l~~l~~~~~~------------------------~~~~~~l~~~l~~~l~d-- 197 (337)
+.+.+ +. .+...+. ..+++++.++..++. ..+.+.+.|.+...+..
T Consensus 617 l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 696 (963)
T 2x19_B 617 YIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL 696 (963)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 43332 22 2344443 455666666665542 11455677777666643
Q ss_pred cchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChH-----H---HHhhHH
Q 019679 198 KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSE-----I---TCSQLL 266 (337)
Q Consensus 198 ~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~-----~---~~~~l~ 266 (337)
.+..+.+.++..++.+...+|.+. +.+.+++.+...+.. +.. ..+..++.+...++.+ . +.+.++
T Consensus 697 ~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~ 772 (963)
T 2x19_B 697 NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAHFPPIEALFLLVT 772 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 356899999999999998887542 233334443333332 111 2444455554422211 1 122333
Q ss_pred HHHHhhcc-C--CChhHHHHHHHHHHHHhhhhcHHHH-----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 267 PVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 267 ~~l~~~l~-d--~~~~vr~~a~~~l~~i~~~~~~~~~-----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
..++..+. + ..+++|......+..+...+....+ ...+++.+...++..+..+...+.+.+..+....
T Consensus 773 ~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 773 SVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 33333333 2 4689999999999999877654321 4566667777777888999999999998887653
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.5e-10 Score=104.03 Aligned_cols=302 Identities=12% Similarity=0.087 Sum_probs=214.2
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hhHH
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DATI 106 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~ 106 (337)
+..+|.+.+.+.+ ..+|..|+-.|.++....... .-...+.+.+.+.+.+++...|..+++.|..+...... +...
T Consensus 295 ~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~ 372 (778)
T 3opb_A 295 ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR 372 (778)
T ss_dssp HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3567788887764 588999999999988754322 12244777777777776666699999999998753221 1111
Q ss_pred --hhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhch--------------------h------------h--------
Q 019679 107 --EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI--------------------D------------L-------- 143 (337)
Q Consensus 107 --~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--------------------~------------~-------- 143 (337)
...++.+.+++++ .+..+...++..+..+...... + .
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 4567888888885 6678888888888877654220 0 0
Q ss_pred -HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchH---HHHHHHHHHHHHHHHh
Q 019679 144 -LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYS---IRDAAANNVKRLAEEF 217 (337)
Q Consensus 144 -~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~~~~~~ 217 (337)
+...++|.+..++.+.+..+|..++..+..++..-... ......++.+++++.+.... +|..|+.+|.++....
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 11237888899999999999999999999998653211 23345778888988876554 8999999999998655
Q ss_pred ChHHHH-----hhHHHHHHHhhcC-cch-------------HHHHHHHHHHHHhccccCh------H-HHH-hhHHHHHH
Q 019679 218 GPDWAM-----QHIVPQVLEMINN-PHY-------------LYRMTILQAISLLAPVMGS------E-ITC-SQLLPVVI 270 (337)
Q Consensus 218 ~~~~~~-----~~l~~~l~~~~~~-~~~-------------~vR~~~~~~l~~l~~~~~~------~-~~~-~~l~~~l~ 270 (337)
.+.... ...+|.+.+++.. +.. ..+..|+.++..++..-+. . ... ...+|.+.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 444321 2578899999872 221 3377899999999876532 1 223 25789999
Q ss_pred hhccCCChhHHHHHHHHHHHHhhhhcH--HHHH-------HhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679 271 NASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVE-------KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 271 ~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~-------~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~ 332 (337)
.++.+++..||++|+.++..++..-.. ..+. ..-++.|..+++..+.++|..|+.||..+..
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999864332 1111 1126677788888999999999999999864
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.35 E-value=2.6e-10 Score=96.61 Aligned_cols=250 Identities=12% Similarity=-0.015 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcC-----------CChhHHHHHHHhHHHhHhhhc-h-hhH--Hh
Q 019679 84 HVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIG-I-DLL--SQ 146 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~l~~~~~-~-~~~--~~ 146 (337)
.....|+.+|++++..-. +.......++.+..++.. .++.++..|+.+|..++..-. . ..+ ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 445577888888875311 111224567778887731 247899999999999975422 1 222 23
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hh-HHHHHHHHHHHH-ccccchHHHHHHHHHHHHHHHHh-Ch-
Q 019679 147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEF-GP- 219 (337)
Q Consensus 147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~-~~- 219 (337)
..+|.|.+++.+.+..++..++..|..++..-+. .. .....+|.++++ ++..+..+++.++.++..++... +.
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 4699999999999999999999999999764211 11 223468888886 46678899999999999887522 11
Q ss_pred HHH--HhhHHHHHHHhhcCcch----HHHHHHHHHHHHhccc--cChH---H-HHhhHHHHHHhhccCCChhHHHHHHHH
Q 019679 220 DWA--MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE---I-TCSQLLPVVINASKDRVPNIKFNVAKV 287 (337)
Q Consensus 220 ~~~--~~~l~~~l~~~~~~~~~----~vR~~~~~~l~~l~~~--~~~~---~-~~~~l~~~l~~~l~d~~~~vr~~a~~~ 287 (337)
..+ ....+|.+.+++.+.+. .++..++.++..++.. .+.+ . .....+|.+..++.+.+..++..|+.+
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 122 34688999999986543 5888888888888742 1111 1 123478999999999999999999999
Q ss_pred HHHHhhhhc-HH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 288 LQSLIPIVD-QS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 288 l~~i~~~~~-~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
|..++..-. .. ....-.+|.|..++.+++.++|..|+.+|..+...
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999984322 11 23345789999999999999999999999999864
No 79
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.33 E-value=2.4e-10 Score=109.48 Aligned_cols=329 Identities=11% Similarity=0.128 Sum_probs=212.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-HHHHHh-----hhHhhHH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQH-----ILPCVKE 76 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~-~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~-----ll~~l~~ 76 (337)
+..++..+.++++....-.+.... .+.+++.+.+++.+ +.+|.+|+++|..+...-.+ +...+. +-+.+..
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 456677777777776654443322 24688899999976 89999999999998875433 221111 1222333
Q ss_pred hcC-CCcHHHHHHHHHHHHhcCcc------cC----hh------hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh
Q 019679 77 LSS-DSSQHVRSALATVIMGMAPI------LG----KD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 139 (337)
Q Consensus 77 l~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 139 (337)
+.. +.+..+++..++.+..+++. .+ .+ .....+++.++.++.+++.+|-..++..+..+....
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 332 56666776666666544321 11 00 223568899999999999999888888777766543
Q ss_pred ch--------h---hHHhhHHHHHHHHh---cCCch-------------HHHHHHHHHhhHhHhhhChhhHHH----HHH
Q 019679 140 GI--------D---LLSQSLLPAIVELA---EDRHW-------------RVRLAIIEYIPLLASQLGVGFFDD----KLG 188 (337)
Q Consensus 140 ~~--------~---~~~~~llp~l~~~~---~d~~~-------------~vr~~~~~~l~~l~~~~~~~~~~~----~l~ 188 (337)
.. + .+...+++.+.... .|.+| ..|+... .+-..+...|++.+.+ .+.
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAIT 442 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHH
Confidence 21 1 11223333333222 11111 3566666 5566666677777766 566
Q ss_pred HHHHHHcc---ccchHHHHHHHHHHHHHHHHhChH--------HHHhhHHHHHHHhhc-----CcchHHHHHHHHHHHHh
Q 019679 189 ALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPD--------WAMQHIVPQVLEMIN-----NPHYLYRMTILQAISLL 252 (337)
Q Consensus 189 ~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~~~~-----~~~~~vR~~~~~~l~~l 252 (337)
+.+.+.+. ..+|..+++++.+++.+++.+... ...+.+++.+..+++ ++++.+|.++++.+++.
T Consensus 443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 66666663 567999999999999998876421 123457777777765 78899999999999999
Q ss_pred ccccCh-HHHHhhHHHHHHh--hccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC---C---------
Q 019679 253 APVMGS-EITCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED---P--------- 315 (337)
Q Consensus 253 ~~~~~~-~~~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d---~--------- 315 (337)
++++.. ..+.+.+++.++. .+.+++..||.+|+.++..+++.+++. .+.+.++..+..++.- +
T Consensus 523 s~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~ 602 (980)
T 3ibv_A 523 ASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVP 602 (980)
T ss_dssp GGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred HHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCccccccc
Confidence 988753 2356677788888 888999999999999999999887653 1123344444333321 1
Q ss_pred ---------CccHHHHHHHHHHHHHHhhh
Q 019679 316 ---------DVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 316 ---------~~~vr~~a~~al~~l~~~~~ 335 (337)
..+=+....+|++.+.+..+
T Consensus 603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 603 TLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred chhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 11247788999999987764
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.33 E-value=8.9e-11 Score=93.90 Aligned_cols=181 Identities=13% Similarity=0.159 Sum_probs=140.3
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH--HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh------hH
Q 019679 34 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD------AT 105 (337)
Q Consensus 34 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~------~~ 105 (337)
.+...+.+.+..-|..+++.|....+..+.+.+ .+.+++.+.-.+-|+|+.|-..+++.+..+...+++. ..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 444555677889999999998887765333221 1223443333345889999999999988876544332 12
Q ss_pred HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH
Q 019679 106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 185 (337)
Q Consensus 106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 185 (337)
...++|.+.+-+.|+...||..+-..+..+.+..++ +.+++.+.+.+++++|++|..++..+..+.+..|... .
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--L 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--G
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--c
Confidence 357899999999999999999999999888877665 4577788888899999999999999999999998763 3
Q ss_pred HHH---HHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 186 KLG---ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 186 ~l~---~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
..+ |.+.++++|.+.+||.+|++++..+....|..
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 467 88999999999999999999999999888765
No 81
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.32 E-value=1.1e-09 Score=106.77 Aligned_cols=330 Identities=8% Similarity=0.010 Sum_probs=210.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-CHH-----H-H---HHhhhH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-----L-A---IQHILP 72 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~-~~~-----~-~---~~~ll~ 72 (337)
+..+|..+.+++.......+... ..+.+++.+.+.+. .++.+|..++.++..+...- ++. . + ...++.
T Consensus 208 ~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence 35577777777776654443221 12356666663222 27899999999999988652 221 1 0 011222
Q ss_pred hhHH--------------hcCCCcHHHHHHHHHHHHhcCcccCh--------hhHHhhhHHHHHHhhcCCChhHHHHHHH
Q 019679 73 CVKE--------------LSSDSSQHVRSALATVIMGMAPILGK--------DATIEQLLPIFLSLLKDEFPDVRLNIIS 130 (337)
Q Consensus 73 ~l~~--------------l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 130 (337)
.+.. ..+|.++.+....++.+..+++.... ......+++.+......++.+++..++.
T Consensus 287 ~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~le 366 (1049)
T 3m1i_C 287 QIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLD 366 (1049)
T ss_dssp HHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2211 12455667777777777665532111 1122456777777777778899999998
Q ss_pred hHHHhHhhh----c-hh---hHHhhHHHHHHHHh---cCC-------------------chHHHHHHHHHhhHhHhhhCh
Q 019679 131 KLDQVNQVI----G-ID---LLSQSLLPAIVELA---EDR-------------------HWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 131 ~l~~l~~~~----~-~~---~~~~~llp~l~~~~---~d~-------------------~~~vr~~~~~~l~~l~~~~~~ 180 (337)
-+..+.+.+ . .. .+...+++.+.... .|. .|..|..+..++..++... .
T Consensus 367 fw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~ 445 (1049)
T 3m1i_C 367 YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-V 445 (1049)
T ss_dssp HHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-H
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-H
Confidence 888887732 1 11 12233444444332 111 1245767777888887544 3
Q ss_pred hhHHHHHHHHHHHHcc--ccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhc-----CcchHHHHHHHHHHH
Q 019679 181 GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN-----NPHYLYRMTILQAIS 250 (337)
Q Consensus 181 ~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~-----~~~~~vR~~~~~~l~ 250 (337)
....+.+.+.+.+.+. ..+|..|++++.+++.++...+.. .+...+++.+..+.. ++...+|..++.+++
T Consensus 446 ~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 3455666777766665 468999999999999887665443 224556666655432 345667777999999
Q ss_pred HhccccCh-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH----------HHHhhhHHHHhhhCCCCccH
Q 019679 251 LLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----------VEKSIRPCLVELSEDPDVDV 319 (337)
Q Consensus 251 ~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----------~~~~i~~~l~~l~~d~~~~v 319 (337)
+.++.+.. ..+...+++.++..+.|+++.||.+|+.++..+++.++... +.+.++..+..+..+.+.+-
T Consensus 526 ry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~ 605 (1049)
T 3m1i_C 526 QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQ 605 (1049)
T ss_dssp HCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 88876542 24567788889999999999999999999999999877542 24555655666666666666
Q ss_pred HHHHHHHHHHHHHhhh
Q 019679 320 RFFATQALQSKDQVMM 335 (337)
Q Consensus 320 r~~a~~al~~l~~~~~ 335 (337)
+....++++.+++..+
T Consensus 606 ~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 606 VHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7788899998887665
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.4e-11 Score=99.28 Aligned_cols=181 Identities=11% Similarity=0.046 Sum_probs=80.9
Q ss_pred HHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH-------hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---
Q 019679 113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--- 182 (337)
Q Consensus 113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--- 182 (337)
+.+-+.++++..|..++..+..+.......... ..+.+.+...+.|.+..+...+++++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 444455555555555555555544433322211 1123344444555555555555555555555554431
Q ss_pred -----HHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc
Q 019679 183 -----FDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 256 (337)
Q Consensus 183 -----~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~ 256 (337)
+...++|.++. .+.|....+|..+..++..++...+. ...++..+...+++.++.+|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 11233444433 24555555555555555444432221 1234445555555555555555555555554444
Q ss_pred ChHH-----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 257 GSEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 257 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
|... ....+++.+..++.|.++.||.+|..++..+...+|
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4321 122234444455555555555555555555555554
No 83
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.31 E-value=7.4e-11 Score=97.23 Aligned_cols=185 Identities=11% Similarity=0.086 Sum_probs=139.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh
Q 019679 32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 104 (337)
Q Consensus 32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 104 (337)
+| +.+-+.+.+|..|..|++.+..+....+.... ...+.+.+++.+.|+|..|...+++++..++...+...
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 55 56888899999999999999988776443321 12356778889999999999999999998887655321
Q ss_pred --------HHhhhHHHHHH-hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhH
Q 019679 105 --------TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 175 (337)
Q Consensus 105 --------~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 175 (337)
....++|.+.+ .+.|..+.+|..+..++..++...+.. ..+++.+...++++++++|..++.++..+.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 23456777665 478999999999999998887654432 335666777889999999999999999999
Q ss_pred hhhChhh-----HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 176 SQLGVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 176 ~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
..+|... ..+.+++.+..++.|.++.||.+|...++.+...+|..
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 8887543 33456777888999999999999999999999888754
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.31 E-value=7.2e-10 Score=88.67 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=137.1
Q ss_pred HHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh-----hH-H
Q 019679 113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----FF-D 184 (337)
Q Consensus 113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----~~-~ 184 (337)
+...+-+.+..-|..++..|....+....+.+ .+.+++-+.-.+.|++..+-..+++.+..+...++.. .+ .
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 33444455666666666666665543222211 1224444444455888888888888888887666332 11 3
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 264 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 264 (337)
..++|.++.-+.|....||+.+-..+..+...+++. .+++.+.+.+++.||++|..++..++.+.+..|.. ...
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~ 204 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLK 204 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccc
Confidence 578999999999999999999999998888776654 57788888999999999999999999998888865 245
Q ss_pred HH---HHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679 265 LL---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 299 (337)
Q Consensus 265 l~---~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~ 299 (337)
.+ |.+.+++.|++..||.+|+.++..+..+.|...
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 67 999999999999999999999999999988764
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.30 E-value=5e-09 Score=76.97 Aligned_cols=215 Identities=16% Similarity=0.196 Sum_probs=163.5
Q ss_pred HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHH
Q 019679 67 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLS 145 (337)
Q Consensus 67 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 145 (337)
.+.++..+..++.|.-|.||+.++..+..+++..++ ..+.++.-+..+++ ++.-..-....+++|.++.. .++.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v- 105 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV- 105 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-
Confidence 345677778899999999999999999999986653 23444445555543 55556767888999999875 44444
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhh
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 225 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 225 (337)
..+.|.+..-..-.+++.|......+..++...+. ....+..-+..++++++..-|-+|++.++.++.. +.. +...
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~-yv~P 181 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK-YVNP 181 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THH-HHGG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Ccc-ccCc
Confidence 66778887766666888999999999998876432 2344666677889999988899999888876543 223 4566
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
.+|.+..++.|.+.-||..++++++.++..-.+ ...++.-.+.-+.|++..|...+...|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875433 3455566667789999999999998888875
No 86
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.30 E-value=6.7e-11 Score=101.77 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCccc-----chHHHHHHhc---------CCC-hHHHHHHHHHhHHHHHHhhCHHH
Q 019679 1 MDKSWRVRYMVANQLYELCEAVGPEPTRS-----DVVPAYVRLL---------RDN-EAEVRIAAAGKVTKICRILNPEL 65 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~-----~l~~~l~~~~---------~d~-~~~vR~~a~~~l~~~~~~~~~~~ 65 (337)
+|++|.+|+.++-++.++.+..|....+. .+.--+...+ +|. -.-||++++++|+.+ .+++++
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e- 261 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP- 261 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence 68999999999999999999887432111 1111111111 110 133555555555555 444433
Q ss_pred HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679 66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 136 (337)
Q Consensus 66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 136 (337)
..++..+......+.|.||..++-.+..+...+.. .+.+++.+...++|.+++||..|+.++.-++
T Consensus 262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 11112111233444555555555555544222221 2444455555555555555555555554444
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.29 E-value=3e-10 Score=106.75 Aligned_cols=236 Identities=13% Similarity=0.208 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHhCCCCc-cc---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC-cH
Q 019679 9 YMVANQLYELCEAVGPEPT-RS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQ 83 (337)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~-~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~-~~ 83 (337)
..++.+++.++...+.... .+ .++|.+.....|....||.+|..+...+...++++.. ..++|.+...+.+. .|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw 148 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKW 148 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccch
Confidence 5678888888877765322 22 4679999999999999999999999999999999877 67888777766554 69
Q ss_pred HHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCch
Q 019679 84 HVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 161 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~ 161 (337)
..+..++.++..+++..+... ...+++|.+.+.+.|..++|..++..++..++..++..++ ...+|.+.+.+.+++.
T Consensus 149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~ 227 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE 227 (986)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh
Confidence 999999999999998664332 2368999999999999999999999999999999998777 6788999999988844
Q ss_pred HHHHHHHHHhhHhHhh-----hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH----HHHhhHHHHHHH
Q 019679 162 RVRLAIIEYIPLLASQ-----LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLE 232 (337)
Q Consensus 162 ~vr~~~~~~l~~l~~~-----~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~ 232 (337)
|-.+ +..++.. ... .....+.|++...|.+.+..++..++..+..+++..... .+.+.++|-+..
T Consensus 228 -~~~~----~~~l~~~tfv~~v~~-~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~ 301 (986)
T 2iw3_A 228 -VPET----VHLLGATTFVAEVTP-ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS 301 (986)
T ss_dssp -HHHH----HHHHTTCCCCSCCCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred -hHHH----HHHhhcCeeEeeecc-hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence 3332 3333322 122 235678999999999999999999999999999877532 245667777766
Q ss_pred hhcC-cchHHHHHHHHHHHHh
Q 019679 233 MINN-PHYLYRMTILQAISLL 252 (337)
Q Consensus 233 ~~~~-~~~~vR~~~~~~l~~l 252 (337)
.... .++.+|..+-.++..+
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHH
Confidence 5543 4588998888887777
No 88
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.27 E-value=6.1e-10 Score=91.87 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=124.3
Q ss_pred HHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHHhhc
Q 019679 162 RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMIN 235 (337)
Q Consensus 162 ~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~ 235 (337)
.-|..++..|..++...+.. ......+|.++. +|+++++.||+.|+.+++.++..-.. + .+....+|.+..++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 35666666666666544221 112235677888 89999999999999999998753211 1 123457888888887
Q ss_pred -CcchHHHHHHHHHHHHhccccCh--H-HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHH
Q 019679 236 -NPHYLYRMTILQAISLLAPVMGS--E-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCL 308 (337)
Q Consensus 236 -~~~~~vR~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l 308 (337)
+++..+|..++++++.++..... . +.....+|.+..++.+++..+|..|+.+|+.++..-.. .....-++|.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45788999999999998764432 2 22346888999999988999999999999998765221 23345688888
Q ss_pred HhhhCCCCccHHHHHHHHHHHHHHh
Q 019679 309 VELSEDPDVDVRFFATQALQSKDQV 333 (337)
Q Consensus 309 ~~l~~d~~~~vr~~a~~al~~l~~~ 333 (337)
..++..++..||..+..+|+.+...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 8888888999999999999988764
No 89
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.27 E-value=1.1e-09 Score=90.25 Aligned_cols=224 Identities=12% Similarity=0.059 Sum_probs=154.0
Q ss_pred hhhHHHHHHhhcCCC------------hhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHH-HhcCCchHHHHHHHHHh
Q 019679 107 EQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYI 171 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~-~~~d~~~~vr~~~~~~l 171 (337)
.+.++.....+.|+. .+-|..|+..|..+++.... .......+|.+.. ++++++..+|..++.++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445566666666542 24667777777777765432 1222346788888 89999999999999999
Q ss_pred hHhHhhhCh---hhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHHhhcCcchHHHHH
Q 019679 172 PLLASQLGV---GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMINNPHYLYRMT 244 (337)
Q Consensus 172 ~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~~~~~~vR~~ 244 (337)
+.+++.-.. .......+|.++.+|++ ++..+|..|+.+|+.++....+ + ......+|.+..++++++..+|..
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 999865321 12233578888888884 5789999999999998754322 1 223468899999999999999999
Q ss_pred HHHHHHHhccccC---hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---------HHHHhhhHHHHhhh
Q 019679 245 ILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSIRPCLVELS 312 (337)
Q Consensus 245 ~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---------~~~~~i~~~l~~l~ 312 (337)
+++++..++.... ........+|.+..++..++..||..++.+|+.+....... .+...+-+.+..+.
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq 266 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 266 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHcc
Confidence 9999999875422 12234468899999999999999999999999998763221 01222333333333
Q ss_pred -CCCCccHHHHHHHHHHHH
Q 019679 313 -EDPDVDVRFFATQALQSK 330 (337)
Q Consensus 313 -~d~~~~vr~~a~~al~~l 330 (337)
++...+++..+.+.+..+
T Consensus 267 ~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 267 QHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp TCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 233466777777666654
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.23 E-value=8.8e-11 Score=98.45 Aligned_cols=272 Identities=13% Similarity=0.030 Sum_probs=151.2
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 82 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~ 82 (337)
++...|+.+--.+..+++. .++.. -....+.+-++|+|+-+|-.|+.+++.+... .+.+.+.+.+++.+.|++
T Consensus 80 ~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~l~~~lk~~L~d~~ 152 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQAIERYMKQAIVDKV 152 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHHHHHHHHHHcCCCC
Confidence 4567788887788777766 33332 5688999999999999999999999987543 345678899999999999
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchH
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 162 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~ 162 (337)
+.||+.|+-+...+....++ . .+.+++.+.+++.|.++.|...|+..+..+.+.- .. ....+++.+.+. .-.++-
T Consensus 153 pyVRk~A~l~~~kL~~~~pe-~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~-a~~kLv~~l~~~-~l~~~~ 227 (355)
T 3tjz_B 153 PSVSSSALVSSLHLLKCSFD-V-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RL-AVSKMISKFTRH-GLKSPF 227 (355)
T ss_dssp HHHHHHHHHHHHHHTTTCHH-H-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HH-HHHHHHHHHHSS-CCSCHH
T ss_pred HHHHHHHHHHHHHHhccCHH-H-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hH-HHHHHHHHHhcC-CCcChH
Confidence 99999999999998876553 2 3568889999999999999988888888886531 11 123344443321 111233
Q ss_pred HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHH
Q 019679 163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR 242 (337)
Q Consensus 163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR 242 (337)
.....+..+..+...- .......+++.+...++..++.|...|++++-.+... +.. ......+.+..++.+++..+|
T Consensus 228 ~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~~fLss~d~nir 304 (355)
T 3tjz_B 228 AYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQLFCSSPKAALR 304 (355)
T ss_dssp HHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSH
T ss_pred HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHcCCCchHH
Confidence 3333444443333221 0123457888999999999999999999999887552 222 223344556666777777899
Q ss_pred HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679 243 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 291 (337)
Q Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 291 (337)
..++..+..+...... .....-..+..+++|++..++.-|+.+|-.-
T Consensus 305 yvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 305 YAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp HHHHHCC------------------------------------------
T ss_pred HHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 9999999888764432 2334556778899999999999888777554
No 91
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.22 E-value=1.7e-09 Score=82.77 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=110.1
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DA 104 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 104 (337)
+..+..+..++.|.|+.++..++.++..+.+..+.. ...+.++|-+..++.+++.+|---|+++++.+.+..+- +.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 345666777777777777777777777777765443 23455666666677777777777777777776654331 22
Q ss_pred HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH
Q 019679 105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 184 (337)
Q Consensus 105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 184 (337)
....+...+...+.+.++-.+..++..++.+ +... ..+.+...+.+++.+++.+++.+++..+-.++..-+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 3455666666666666666677776666666 2211 12445555555556666666666666666666555433333
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
+.+..-+-.+++.+++.+++-|+..+..+..
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 3344445555666666666666666655543
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.21 E-value=2.2e-08 Score=96.27 Aligned_cols=330 Identities=8% Similarity=0.020 Sum_probs=208.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHH-HhcCCChHHHHHHHHHhHHHHHHh-h-CH-HHHH-------Hhhh
Q 019679 4 SWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYV-RLLRDNEAEVRIAAAGKVTKICRI-L-NP-ELAI-------QHIL 71 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~-~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~~~~~-~-~~-~~~~-------~~ll 71 (337)
+..+...+.++++....-++... ..+.+++.+. +++. +++.|..|+++|..+... . ++ ..+. +.++
T Consensus 208 ~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l 285 (1023)
T 4hat_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTL 285 (1023)
T ss_dssp SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH
Confidence 34556667777777665444432 2346888888 8875 578999999999999873 2 12 0111 1222
Q ss_pred Hhh-HH-------------hcCCCcHHHHHHHHHHHHhcCcccChh--------hHHhhhHHHHHHhhcCCChhHHHHHH
Q 019679 72 PCV-KE-------------LSSDSSQHVRSALATVIMGMAPILGKD--------ATIEQLLPIFLSLLKDEFPDVRLNII 129 (337)
Q Consensus 72 ~~l-~~-------------l~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~d~~~~vr~~a~ 129 (337)
+.+ .. ..++.+.......+..+..+++....- ......+..+..+...++.++-..++
T Consensus 286 ~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl 365 (1023)
T 4hat_C 286 QQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTL 365 (1023)
T ss_dssp HHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 222 11 123345666666666666555422211 11112233555665666788877888
Q ss_pred HhHHHhHhhhchh--------hHHhhHHHHHHHHhc----------C-Cch----------HHHH-HHHHHhhHhHhhhC
Q 019679 130 SKLDQVNQVIGID--------LLSQSLLPAIVELAE----------D-RHW----------RVRL-AIIEYIPLLASQLG 179 (337)
Q Consensus 130 ~~l~~l~~~~~~~--------~~~~~llp~l~~~~~----------d-~~~----------~vr~-~~~~~l~~l~~~~~ 179 (337)
.-...+.+..-.+ .+...+.+.+..... | ..| .... ..-+.+..+....+
T Consensus 366 ~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~ 445 (1023)
T 4hat_C 366 DYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV 445 (1023)
T ss_dssp HHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH
Confidence 7777776543211 111234444433211 1 111 1111 11144444444334
Q ss_pred hhhHHHHHHHHHHHHccc--cchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhc-----CcchHHHHHHHHHH
Q 019679 180 VGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN-----NPHYLYRMTILQAI 249 (337)
Q Consensus 180 ~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~-----~~~~~vR~~~~~~l 249 (337)
. ...+.+.+.+.+.+.+ .+|..|++++-++|.+++....+ .+...++|.+.++.. |++..+|.++++.+
T Consensus 446 ~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l 524 (1023)
T 4hat_C 446 I-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVV 524 (1023)
T ss_dssp H-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence 3 4455666766666654 68999999999999998877543 345678888888876 46678899999999
Q ss_pred HHhccccCh-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH----------HHHhhhHHHHhhhCCCCcc
Q 019679 250 SLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----------VEKSIRPCLVELSEDPDVD 318 (337)
Q Consensus 250 ~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----------~~~~i~~~l~~l~~d~~~~ 318 (337)
|+.++++.. ..+.+.++..++..+.|+++.|..+|+.++..+++.++... +.+.++..+.....+-+++
T Consensus 525 Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~ 604 (1023)
T 4hat_C 525 GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQ 604 (1023)
T ss_dssp HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence 999887642 23567788889999999999999999999999999887643 3455666666666666778
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 019679 319 VRFFATQALQSKDQVMMS 336 (337)
Q Consensus 319 vr~~a~~al~~l~~~~~~ 336 (337)
-+..+.+|++.+++..++
T Consensus 605 ~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 605 QVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 888999999999987764
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.18 E-value=1.3e-08 Score=78.06 Aligned_cols=221 Identities=11% Similarity=0.080 Sum_probs=171.5
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--hh
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG 181 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~ 181 (337)
+..+..+.+++.|.++.++..++..++.+.+.... ....+.++|.+..+..+++.++---++.++..+....+ ++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34678889999999999999999999999887532 22347789999999999999999999999999988763 33
Q ss_pred hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH
Q 019679 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 261 (337)
Q Consensus 182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~ 261 (337)
-+..+...+...+++++.-++..++..++.+ + .......++..+..++.+++.+++.+++.++..++..-+....
T Consensus 112 -~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 112 -TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp -HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred -HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 3467888899999999999999999999887 2 2222456788888888889999999999999999887775556
Q ss_pred HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh-hcHH--HHHHhhhHHHHhhh-CCCCccHHHHHHHHHHHHHH
Q 019679 262 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQS--VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 262 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~-~~~~--~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~l~~ 332 (337)
...++.-+..+++.+++.++.-|..++..+... +.++ .-...+.....++. -...|.+|..|-..-+.+-.
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 667777788888888999999999999888653 2211 11235566666666 66788898888766555443
No 94
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.18 E-value=8.3e-12 Score=90.56 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=79.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 108 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 108 (337)
..-.+.+.+.++|+++.+|..++..|+.++.. . ++.+.++++|+++.||..++.+++.+.. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 34567777788888888888888887765432 1 3666667778888888888888887763 23
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhH
Q 019679 109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 173 (337)
Q Consensus 109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~ 173 (337)
.++.+.+++.|+++.||..++.+++.+.. +..+|.+.+.++|+++.||..++..+..
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 46777777778888888888888877652 3456667777777777788777777654
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.17 E-value=3.4e-12 Score=92.61 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 262 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 262 (337)
+.+...+.+...|+|+++.+|..|+..|+.+ |.. . ++.+...++|+++.+|..++.+++.+..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRM----GDE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSC----SST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3455677778888888888888888888754 222 1 4777788888888888888888887652
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 329 (337)
...++.+...+.|+++.||.+++.+|+.+.. ....|.|..+++|+++.||..|+++|+.
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2346777777788888899888888888753 3456667777788888888888888764
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.09 E-value=4.9e-08 Score=93.90 Aligned_cols=169 Identities=10% Similarity=0.056 Sum_probs=126.9
Q ss_pred HHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcC-----CCc
Q 019679 13 NQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSS-----DSS 82 (337)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~-----d~~ 82 (337)
++|..++...++ ...+.+++.+.+.+.+ .+|..|++++.+++.+++.+.++ .+...++|.+..+.+ |+.
T Consensus 435 d~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k 513 (1023)
T 4hat_C 435 EVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK 513 (1023)
T ss_dssp HHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence 555555554444 3345677777776654 67999999999999999988765 345667777777776 567
Q ss_pred HHHHHHHHHHHHhcCcccChh-hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----------HHhhHHHH
Q 019679 83 QHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQSLLPA 151 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~llp~ 151 (337)
..||..++..+|..++.+... .....++..+.+.+.|+++.|..+|+.++..+++..+... +.+.++..
T Consensus 514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 788999999999999876422 1235666777777788889999999999999999876432 34556666
Q ss_pred HHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 152 IVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
+.+...+-+..-+..+.++++.+++..+...
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 6676677778888999999999999987544
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.09 E-value=5.2e-10 Score=86.48 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=84.0
Q ss_pred HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH-hhcCCChhHHHHHHHhHHHhHhhhchhhHHh
Q 019679 68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 146 (337)
Q Consensus 68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 146 (337)
+.++++...+.+++...||..|+..++.. . ....+++.+.. +..|++..||..+..+++.++...+++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 34556666666666666676666666665 2 11345566665 555666666666666666666533433
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679 147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220 (337)
Q Consensus 147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 220 (337)
..++.+.....|++..+|..+.+...-.+.........+.++|++..+..|++.-||.+....|..+++.. ++
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~-Pd 211 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF-PD 211 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC-HH
Confidence 24455666666666666666666654333332222333456667666777777777777777777776654 44
No 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.95 E-value=7.5e-08 Score=74.54 Aligned_cols=140 Identities=10% Similarity=0.129 Sum_probs=107.1
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHh
Q 019679 146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 224 (337)
Q Consensus 146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 224 (337)
+.+++....+.+++...+|..++..++.. . . .+.+++.+.. +..|++|.||+.+...++.++...+++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----~--~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----K--DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----T--SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----C--cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 56777778888888889999888877766 2 1 1457777776 677899999999999999888755555
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
..++.+.....|++..+|..++..+.-.+.......-.+.++|++..+..|++.-||.+....|..+++.-+
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 366788888899999999888777644333222222345689999999999999999999999999988654
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.84 E-value=5.2e-05 Score=73.09 Aligned_cols=326 Identities=11% Similarity=0.055 Sum_probs=192.3
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--------H-------HHH-
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------E-------LAI- 67 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--------~-------~~~- 67 (337)
++.++...+.++..+++..-|+. |+.+++.+.+.++. ++..+...+..|..+.+.+.. . .+.
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~ 202 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN 202 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 56788899999999999877665 68899999888854 455677777777777766321 1 111
Q ss_pred --HhhhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccChhhHH-hhhHHHH-HHhhcCCChhHHHHHHHhHHHhHhh-hch
Q 019679 68 --QHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIF-LSLLKDEFPDVRLNIISKLDQVNQV-IGI 141 (337)
Q Consensus 68 --~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~-~~~ 141 (337)
+.+++.+...+ +..++.+...++++++.+..+++-.... ..+++.+ ..++. ++.+|..|+.++..++.. .+.
T Consensus 203 ~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~ 280 (1073)
T 3gjx_A 203 EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQ 280 (1073)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGG
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccc
Confidence 12334443333 3467788889999999999988755433 5678877 57764 478999999999887754 110
Q ss_pred --hhH---HhhHHHHHHHH------------------------------------------------------------h
Q 019679 142 --DLL---SQSLLPAIVEL------------------------------------------------------------A 156 (337)
Q Consensus 142 --~~~---~~~llp~l~~~------------------------------------------------------------~ 156 (337)
+.+ .+.++..+..+ .
T Consensus 281 ~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s 360 (1073)
T 3gjx_A 281 YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVS 360 (1073)
T ss_dssp GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 110 00111101000 0
Q ss_pred cCCchHHHHHHHHHhhHhHhhhCh---------------------------hhHHHHHHHHHHHHcc-------------
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLGV---------------------------GFFDDKLGALCMQWLK------------- 196 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~~---------------------------~~~~~~l~~~l~~~l~------------- 196 (337)
..++..+=..+++....+.+.+-. ..+..++...+..-+.
T Consensus 361 ~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~g 440 (1073)
T 3gjx_A 361 EVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQG 440 (1073)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccc
Confidence 111111112222222222211100 0011122222222221
Q ss_pred --------ccch-HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC--cchHHHHHHHHHHHHhccccChH---HHH
Q 019679 197 --------DKVY-SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE---ITC 262 (337)
Q Consensus 197 --------d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~~---~~~ 262 (337)
|... ..+...-.++..+. .++++.....+++.+.+.+.. .+|..+.+++.++|+++.....+ .+.
T Consensus 441 e~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L 519 (1073)
T 3gjx_A 441 EVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 519 (1073)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred hHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence 0000 12222222333332 345555556667777665553 46999999999999998777642 567
Q ss_pred hhHHHHHHhhccCC-----ChhHHHHHHHHHHHHhhhhcH-HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 263 SQLLPVVINASKDR-----VPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 263 ~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
+.+++.++.+...+ ..-++...+..+|+..+.+.. ..+...++..|.+...|+++.|+..|+.|+..+.+.-
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 78888888877544 234565666788888776653 2445666666667778899999999999998887653
No 100
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.69 E-value=2.4e-05 Score=77.19 Aligned_cols=133 Identities=12% Similarity=0.134 Sum_probs=90.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC------HH-------HHH-
Q 019679 2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN------PE-------LAI- 67 (337)
Q Consensus 2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~------~~-------~~~- 67 (337)
+..+.||..++.++..+++.-.|+. |+++++.+.+.++. ++..+..++..|..+.+.+. .. .+.
T Consensus 107 ~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~ 184 (1204)
T 3a6p_A 107 EEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQ 184 (1204)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 3578999999999999999887744 78999999999866 55668888888888876421 10 011
Q ss_pred --HhhhHhhHHhcCC-------------------CcHHHHHHHHHHHHhcCcccChhhHHh---hhHHHHHHhhcCCChh
Q 019679 68 --QHILPCVKELSSD-------------------SSQHVRSALATVIMGMAPILGKDATIE---QLLPIFLSLLKDEFPD 123 (337)
Q Consensus 68 --~~ll~~l~~l~~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~ 123 (337)
..+++.+...+++ .+..++..+++++.......+.....+ .+++.+..++.+ +.
T Consensus 185 ~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~ 262 (1204)
T 3a6p_A 185 NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QE 262 (1204)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HH
Confidence 1233333333322 234577788888887777666443322 377777777664 67
Q ss_pred HHHHHHHhHHHhHhh
Q 019679 124 VRLNIISKLDQVNQV 138 (337)
Q Consensus 124 vr~~a~~~l~~l~~~ 138 (337)
+|..|+.+|..++..
T Consensus 263 lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 263 LQLGAAECLLIAVSR 277 (1204)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888877764
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.63 E-value=2.2e-05 Score=75.65 Aligned_cols=172 Identities=8% Similarity=0.026 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCC---
Q 019679 10 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDS--- 81 (337)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~--- 81 (337)
..-+++.-+ ..++++.....+++.+.+.+.. .+|..+++++.+++.++..+.++ .+...+++.+..+.+.+
T Consensus 458 ~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~k 536 (1073)
T 3gjx_A 458 NMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGK 536 (1073)
T ss_dssp HHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccccc
Confidence 334444333 3444444445566777665543 46999999999999998877753 45566777777776544
Q ss_pred --cHHHHHHHHHHHHhcCcccChh-hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----------HHhhH
Q 019679 82 --SQHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQSL 148 (337)
Q Consensus 82 --~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l 148 (337)
...++...+..+|...+.+... ...+.++..+.+.+.++++.|+.+|+.++..+++.++... +...+
T Consensus 537 d~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~i 616 (1073)
T 3gjx_A 537 DNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI 616 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHH
T ss_pred chhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Confidence 4567777888999988765432 1345667777788889999999999999999998876532 33445
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679 149 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 182 (337)
Q Consensus 149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 182 (337)
+..+.....+-+..-.....++++.++...+.+.
T Consensus 617 l~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 617 LNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp HTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence 5555566666677788888999999998887654
No 102
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.51 E-value=4.6e-05 Score=75.18 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=172.9
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHHHHhhhHh--------hHHhc--------CCCcHHHHHHHHHH
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELAIQHILPC--------VKELS--------SDSSQHVRSALATV 92 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~~~ll~~--------l~~l~--------~d~~~~vr~~a~~~ 92 (337)
.+++.+..++.+ +.+|..|+++|..++..-. ++.. ..++.. +.+.. +|.+..+++..++.
T Consensus 249 ~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~-~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 249 KLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR-KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp HHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH-GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH-HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 378888877764 6799999999999987532 2221 111111 11121 33355777777777
Q ss_pred HHhcCcccC----------hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--h-h---hHHhhHHHHHHHHh
Q 019679 93 IMGMAPILG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-D---LLSQSLLPAIVELA 156 (337)
Q Consensus 93 l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~llp~l~~~~ 156 (337)
+..++..+. .......+++.++++..+++..|-..++.....+.+... . + .+...+++.+...+
T Consensus 326 l~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l 405 (1204)
T 3a6p_A 326 LCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNL 405 (1204)
T ss_dssp HHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 776653211 111235789999999999888888888887776665532 1 1 12233444442111
Q ss_pred ------cCC---------------------chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc------------
Q 019679 157 ------EDR---------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD------------ 197 (337)
Q Consensus 157 ------~d~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------------ 197 (337)
.+. .+..|......+..++...+. ...+.+.+.+...+.+
T Consensus 406 ~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 406 VKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp SCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC-----------
T ss_pred HHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Confidence 100 124566666666666654432 2333444544333322
Q ss_pred -------------cchHHHHHHHHHHHHHHHHh---C-hHHHHhhHHHHHHHhh---cCcchHHHHHHHHHHHHhccccC
Q 019679 198 -------------KVYSIRDAAANNVKRLAEEF---G-PDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMG 257 (337)
Q Consensus 198 -------------~~~~vr~~a~~~l~~~~~~~---~-~~~~~~~l~~~l~~~~---~~~~~~vR~~~~~~l~~l~~~~~ 257 (337)
+.+...++....+..+...+ . .+.....+.+.+...+ +..++.+|...+.+++.+..++.
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~ 564 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT 564 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh
Confidence 23344566555555555443 1 1111112344444442 23467799999999999888765
Q ss_pred h-HHHHhhHHHHHHhhccC------------CChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCC---CCccH
Q 019679 258 S-EITCSQLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSED---PDVDV 319 (337)
Q Consensus 258 ~-~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d---~~~~v 319 (337)
. ..+...++..++..+.+ .+.+||.+|+.++..+++.++... +.+.+...+..++.. -+..=
T Consensus 565 ~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e 644 (1204)
T 3a6p_A 565 YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQME 644 (1204)
T ss_dssp TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHH
T ss_pred cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHH
Confidence 2 23556666777766655 345899999999999998886541 234445544454432 23445
Q ss_pred HHHHHHHHHHHHHhhh
Q 019679 320 RFFATQALQSKDQVMM 335 (337)
Q Consensus 320 r~~a~~al~~l~~~~~ 335 (337)
+....+|+..++..++
T Consensus 645 ~~~L~eal~~ia~~~~ 660 (1204)
T 3a6p_A 645 KCALMEALVLISNQFK 660 (1204)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhccCC
Confidence 6667777777755443
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.47 E-value=0.00018 Score=64.46 Aligned_cols=302 Identities=11% Similarity=0.076 Sum_probs=184.2
Q ss_pred cchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHH-hcCC-CcHHHHHHHHHHHHhcCcccChh--
Q 019679 29 SDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE-LSSD-SSQHVRSALATVIMGMAPILGKD-- 103 (337)
Q Consensus 29 ~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-l~~d-~~~~vr~~a~~~l~~l~~~~~~~-- 103 (337)
.+.++.+...++ ..-.+-|+.|+..|..+++..... +...-+|.+.. +-+| .+..+-+.+++.|..+...-+.+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence 355555555554 345778999999999888765544 22333444433 3344 34455566777775543211110
Q ss_pred -----------------hH--HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh---H--HhhHHHHHHHHhcCC
Q 019679 104 -----------------AT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L--SQSLLPAIVELAEDR 159 (337)
Q Consensus 104 -----------------~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~--~~~llp~l~~~~~d~ 159 (337)
.. ..+-++.++.+++..+..+|..+++.|..++..-+.+. + .+.-+|.+..+++|+
T Consensus 99 ~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 99 EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178 (651)
T ss_dssp ---------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS
T ss_pred cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc
Confidence 00 13568889999999999999999999999997754422 2 235678899999999
Q ss_pred chHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccch----HHHHHHHHHHHHHHHHhC-hH-HHH-hhHHHH
Q 019679 160 HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEFG-PD-WAM-QHIVPQ 229 (337)
Q Consensus 160 ~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~~-~~-~~~-~~l~~~ 229 (337)
...+|..++..+..+...-.. -...+...+.++..+..+.. .|-+.++..+..+.+.-. ++ .+. ...+|.
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 999999999999988765321 11223355667777766544 677788888888876421 12 222 235555
Q ss_pred HHHhhcCc----chHHH-----HHHHHHHHHhccccCh---------HHHHhhHHHHHHhhccCC--ChhHHHHHHHHHH
Q 019679 230 VLEMINNP----HYLYR-----MTILQAISLLAPVMGS---------EITCSQLLPVVINASKDR--VPNIKFNVAKVLQ 289 (337)
Q Consensus 230 l~~~~~~~----~~~vR-----~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~ 289 (337)
+..++..+ .|.-+ ..++..+..+...-++ ......+++.+++++..+ ...+|..|+.+++
T Consensus 259 L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla 338 (651)
T 3grl_A 259 MKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS 338 (651)
T ss_dssp GGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 55565422 23211 2345555555443221 122345677777776544 4679999999999
Q ss_pred HHhhhhcH--HHHHH----------hhhHHHHhhhCCC-CccHHHHHHHHHHHHH
Q 019679 290 SLIPIVDQ--SVVEK----------SIRPCLVELSEDP-DVDVRFFATQALQSKD 331 (337)
Q Consensus 290 ~i~~~~~~--~~~~~----------~i~~~l~~l~~d~-~~~vr~~a~~al~~l~ 331 (337)
.+...-.. +.+.. .++..|..+.++. ..++|..|+..+..+.
T Consensus 339 ~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 339 EVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 88754322 22221 1333344445554 4678988888887664
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.45 E-value=0.00023 Score=60.97 Aligned_cols=251 Identities=14% Similarity=0.093 Sum_probs=160.0
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHH
Q 019679 33 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 112 (337)
Q Consensus 33 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 112 (337)
..++.... .++..++.|+..+.++.+.++.- .+..+..+..+++|.+..||..|++.|..++.. .....+..+
T Consensus 32 ~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDv 104 (507)
T 3u0r_A 32 QVILDGVK-GGTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADI 104 (507)
T ss_dssp HHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHH
Confidence 33334443 36899999999999999987763 234566777899999999999999999999975 346778899
Q ss_pred HHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh----hHHHHHH
Q 019679 113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLG 188 (337)
Q Consensus 113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~ 188 (337)
+.++++..++.-+..+=++|-.+.+.-....+ ..++..+.. .+..+|.-++..+..-...++.+ .....+.
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl-~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDAKGTL-GGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcChHHHH-HHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99999988888888888888777765322222 333333333 35789998888887665555443 2445566
Q ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc--------Ccc--hHHHHHHHHHHHHhccccCh
Q 019679 189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--------NPH--YLYRMTILQAISLLAPVMGS 258 (337)
Q Consensus 189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~--~~vR~~~~~~l~~l~~~~~~ 258 (337)
..+.+.|.|-+..--......|..+ +.++.-.-.+.+++.+.+... |.. .+...++-.++..++.....
T Consensus 180 ~~ikK~L~DVT~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~S 258 (507)
T 3u0r_A 180 TESKKVLEDVTGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHS 258 (507)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCCh
Confidence 7777778776554333333333221 112211224566776666532 222 23334444555555555555
Q ss_pred HHHHhhHHHHHHhhccCCCh-----hHHHHHHHHHHHHhhhhc
Q 019679 259 EITCSQLLPVVINASKDRVP-----NIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 259 ~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~i~~~~~ 296 (337)
..|..++...++..+++-.. ..|....++++.++...|
T Consensus 259 tkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 259 TRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp HHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 44555544444444443322 378899999999998888
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.39 E-value=0.00022 Score=61.14 Aligned_cols=243 Identities=13% Similarity=0.083 Sum_probs=154.0
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 160 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~ 160 (337)
.+...++.|++.+.++...++. ..+.-+..+..++.|.+..||..|++.|..+++. .....+...|.++++..+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccc
Confidence 4688999999999999998875 3467788999999999999999999999999986 335788899999999888
Q ss_pred hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HHhhHHHHHHHhhcC
Q 019679 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINN 236 (337)
Q Consensus 161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~~ 236 (337)
...+..+-.++..+.+.-.+.. +-.++.+... .+..+|+.++..|..-...++.+. ....+...+...+.|
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence 8777777777777665432322 2223333333 457999999998877666555432 344566677777766
Q ss_pred cchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhc------cCCChhHHHHHHHHHHHH----hhhhcHH----HHHH
Q 019679 237 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS------KDRVPNIKFNVAKVLQSL----IPIVDQS----VVEK 302 (337)
Q Consensus 237 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~i----~~~~~~~----~~~~ 302 (337)
-+..-=...+..+..+- ..+...-...+++++..-. .-.+.+.-...+.|+..- .....+. ++..
T Consensus 189 VT~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 189 VTGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp CCHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 54222122333333322 1222223456666666542 112233333344444333 3333333 4456
Q ss_pred hhhHHHHhhhCC-CCccHHHHHHHHHHHHHHhhh
Q 019679 303 SIRPCLVELSED-PDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 303 ~i~~~l~~l~~d-~~~~vr~~a~~al~~l~~~~~ 335 (337)
+++|.+..+... ...+.+.-..+++..++...|
T Consensus 268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 677777655442 233478888888888877655
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.33 E-value=2.1e-05 Score=62.05 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=84.0
Q ss_pred cchHHHHHHhcCCChH--HHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-
Q 019679 29 SDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK- 102 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~--~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~- 102 (337)
...+|.+.+++.++++ .++..++..+..++...++. ......+|.+.+++..+++.+|..++.+|.+++..-.+
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3458899999988877 89888888888877543221 22334789999999999999999999999999753211
Q ss_pred --hhHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhh
Q 019679 103 --DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQV 138 (337)
Q Consensus 103 --~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~ 138 (337)
......-+|.+.+++.+ .+.++++.++.+|-.+...
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 11234678999999984 6899999999888888654
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.26 E-value=4.3e-05 Score=60.29 Aligned_cols=186 Identities=12% Similarity=0.038 Sum_probs=120.9
Q ss_pred hhHhhHHhcCCCcH--HHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hh
Q 019679 70 ILPCVKELSSDSSQ--HVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--ID 142 (337)
Q Consensus 70 ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~ 142 (337)
-+|.+.++++.+++ .++..++..+..++..-.+ .......+|.+.+++...+++++..|+.+|..++..-. ..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46777778877776 8998898888887743221 12234678999999999999999999999999986321 11
Q ss_pred -hHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhhC-hhhHHHHHHHHHHHHcc-------c---------cchHHH
Q 019679 143 -LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLK-------D---------KVYSIR 203 (337)
Q Consensus 143 -~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-------d---------~~~~vr 203 (337)
......+|.+.+++. ..++.++..++..+..++..-. +......-+|.+..++. + .+..|+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 123457888888887 4688999999988888875432 22233345566655432 1 245888
Q ss_pred HHHHHHHHHHHHHh--ChHHHH--hhHHHHHHHhhcC------cchHHHHHHHHHHHHhccc
Q 019679 204 DAAANNVKRLAEEF--GPDWAM--QHIVPQVLEMINN------PHYLYRMTILQAISLLAPV 255 (337)
Q Consensus 204 ~~a~~~l~~~~~~~--~~~~~~--~~l~~~l~~~~~~------~~~~vR~~~~~~l~~l~~~ 255 (337)
+.|..+|..++..- ....+. ..+++.++.+++. .+...++.++.++..|+..
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 88888888876421 011121 2345555555432 2345666777777766644
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.10 E-value=0.0034 Score=56.39 Aligned_cols=255 Identities=12% Similarity=0.094 Sum_probs=155.2
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-C-CChhHHHHHHHhHHHhHhhhch-------------
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-D-EFPDVRLNIISKLDQVNQVIGI------------- 141 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d-~~~~vr~~a~~~l~~l~~~~~~------------- 141 (337)
+.+.+-..-|+.|+..|..+++.+..+. -..-+|.+...++ | .+.++-+.++..|-.+...-+.
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~ 108 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED 108 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence 4445556788899999988887665433 2333455555554 3 3567777777777554432111
Q ss_pred ------hhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---H--HHHHHHHHHHHccccchHHHHHHHH
Q 019679 142 ------DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---F--DDKLGALCMQWLKDKVYSIRDAAAN 208 (337)
Q Consensus 142 ------~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~--~~~l~~~l~~~l~d~~~~vr~~a~~ 208 (337)
+.+ .+.-++.+..+++..+..+|..+++.+..++...+... + .+.-++.++.+|+|+...+|..++.
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 011 13457888889999999999999999999987765422 1 1246788899999999999999999
Q ss_pred HHHHHHHHhCh-HH--HHhhHHHHHHHhhcCcch----HHHHHHHHHHHHhcccc--ChHHHHh-hHHHHHHhhccCCCh
Q 019679 209 NVKRLAEEFGP-DW--AMQHIVPQVLEMINNPHY----LYRMTILQAISLLAPVM--GSEITCS-QLLPVVINASKDRVP 278 (337)
Q Consensus 209 ~l~~~~~~~~~-~~--~~~~l~~~l~~~~~~~~~----~vR~~~~~~l~~l~~~~--~~~~~~~-~l~~~l~~~l~d~~~ 278 (337)
.|..+.+.-.. +. ..+..++.+.+.+..+.. .+-.-++..+..+...- ....|.+ ..+|.+..++..+..
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 99998764311 11 134566777777765443 45555667777776553 2334443 355666666643221
Q ss_pred ----h--HHHH---HHHHHHHHhhhhc-------HH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHH
Q 019679 279 ----N--IKFN---VAKVLQSLIPIVD-------QS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQ 332 (337)
Q Consensus 279 ----~--vr~~---a~~~l~~i~~~~~-------~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~ 332 (337)
. .-.+ +...+..+...-+ ++ .....+++.|.+++..+ ...|+..|..+++.+.+
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence 1 2223 2233333322211 11 22334566666654433 45688888888887764
No 109
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.91 E-value=0.00015 Score=69.36 Aligned_cols=186 Identities=7% Similarity=0.014 Sum_probs=121.6
Q ss_pred hHHHHHHhhcCCCh-hHHHH-HHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhh----hChh
Q 019679 109 LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ----LGVG 181 (337)
Q Consensus 109 l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~----~~~~ 181 (337)
++|.++++.++++. ++... +...+..+....-.....+.++..+.+... +++| .|..++..+..+.-. ++.+
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 66666666666544 55554 444555554443333334556666655555 6899 999998887665432 2333
Q ss_pred hHHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC------------cchHHHHHHHHH
Q 019679 182 FFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN------------PHYLYRMTILQA 248 (337)
Q Consensus 182 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~------------~~~~vR~~~~~~ 248 (337)
.. ..+...+..+|.|+. .+||+.|..+|+-+....+.....+.++..+.+.+.. .+...|-+++..
T Consensus 840 ~~-~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg 918 (997)
T 1vsy_5 840 EK-NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG 918 (997)
T ss_dssp HH-HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence 32 568889999999999 9999999999999987541312223444444444422 112577888888
Q ss_pred HHHhccccCh----HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679 249 ISLLAPVMGS----EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297 (337)
Q Consensus 249 l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 297 (337)
++++...+.= ....+.++..+.....|+.+ |+..+-++++.+-++...
T Consensus 919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 8888766541 34666777777777788644 999999999998765544
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.87 E-value=0.00097 Score=64.82 Aligned_cols=184 Identities=11% Similarity=0.013 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC----
Q 019679 83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED---- 158 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d---- 158 (337)
+..|.-...++...+. . .-+..+.+.+.+..-...+ ++..+........++ +.++..+..++++
T Consensus 339 ~~~r~~~lDal~~aGT----~----~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt---~e~l~~~~~l~~~~~~~ 406 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMAT----S----EALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT---RESLSYARELLNTSFIR 406 (1056)
T ss_dssp HHHHHHHHHHHHHHCS----H----HHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC---HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhHhcCC----H----HHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC---HHHHHHHHHHHhCcccc
Confidence 5677777777776665 2 2233344444443322222 334443333222221 2344444555543
Q ss_pred CchHHHHHHHHHhhHhHhhhC------hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH
Q 019679 159 RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 232 (337)
Q Consensus 159 ~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~ 232 (337)
.++.+|..++-.++.++...+ .....+.+...+.+.+...+..-+..++++||.+.. . ..++.+..
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p----~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P----NSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G----GGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h----hHHHHHHH
Confidence 457788888888888876542 122345566677777777777778888888887642 2 24455555
Q ss_pred hhc-------CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679 233 MIN-------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289 (337)
Q Consensus 233 ~~~-------~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 289 (337)
++. +...++|.+|+.++..++... ++...+.+++++.+ .+..++||.+|+..|-
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF 539 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence 543 234689999999999887422 22234445555544 5667899999987653
No 111
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.71 E-value=6.1e-05 Score=72.06 Aligned_cols=188 Identities=14% Similarity=0.093 Sum_probs=124.9
Q ss_pred hHHHHHHhcCCChH-HHHHH-HHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCc----ccChh
Q 019679 31 VVPAYVRLLRDNEA-EVRIA-AAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAP----ILGKD 103 (337)
Q Consensus 31 l~~~l~~~~~d~~~-~vR~~-a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~----~~~~~ 103 (337)
++|.+..+..+++. ++... +..++..++...-+....+.++..+.+..+ +++| +|..++..+-.+.- .+.++
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 66667666766665 66555 445555554443344444556666666666 6899 99999887654321 22322
Q ss_pred hHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC------------CchHHHHHHHHH
Q 019679 104 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------------RHWRVRLAIIEY 170 (337)
Q Consensus 104 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d------------~~~~vr~~~~~~ 170 (337)
....+...+.+++.|+. .+||..|..+|..+.+..+.......++..+.+.... ++...|++++-.
T Consensus 840 -~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg 918 (997)
T 1vsy_5 840 -EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG 918 (997)
T ss_dssp -HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence 23578899999999999 9999999999999987752311112344444333311 122578888888
Q ss_pred hhHhHhhhCh----hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH
Q 019679 171 IPLLASQLGV----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 221 (337)
Q Consensus 171 l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 221 (337)
|+.++..++- ..+.+.++..+.....|+.+ |+..+-++++.+-+.....|
T Consensus 919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W 972 (997)
T 1vsy_5 919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTW 972 (997)
T ss_dssp HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhH
Confidence 8888887642 35777788777777888544 89999999998877664433
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.56 E-value=0.02 Score=45.66 Aligned_cols=128 Identities=14% Similarity=0.235 Sum_probs=90.7
Q ss_pred hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHH
Q 019679 123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSI 202 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 202 (337)
+.+...+.....+.-.-.+. +.+.+++.+.++..|++..+|..+++.+...+.. +..+..++++.+..+++|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 46666666655544332333 5577888888888888888999888888877643 23466778888888889988888
Q ss_pred HHHHHHHHHHHHHHh-------Ch-----H--H-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679 203 RDAAANNVKRLAEEF-------GP-----D--W-AMQHIVPQVLEMINNPHYLYRMTILQAISLLA 253 (337)
Q Consensus 203 r~~a~~~l~~~~~~~-------~~-----~--~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~ 253 (337)
.+.++.+.+.+.... +. + | ....+-..+.....+.+..+|..++.++..+.
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888888887776542 11 1 1 13345566777777788999999999998865
No 113
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.53 E-value=0.00035 Score=64.75 Aligned_cols=147 Identities=20% Similarity=0.160 Sum_probs=73.8
Q ss_pred HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhh-HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh-
Q 019679 68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQL-LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL- 143 (337)
Q Consensus 68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~- 143 (337)
+.++|.+.+ ++++++..|..|+.++.+++..-.... ..+.+ .+++..++.|++.+||.+|+.+|..++..-|.+.
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 346666654 456666777777777777764211111 11233 3445556677777777777777776665544332
Q ss_pred ---HHhhHHHHHHHHhcCC--------------c-------hHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHcc
Q 019679 144 ---LSQSLLPAIVELAEDR--------------H-------WRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK 196 (337)
Q Consensus 144 ---~~~~llp~l~~~~~d~--------------~-------~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~ 196 (337)
+...++|.+..+++.. . |.+-..++..+..++..-+.. ......+|.++..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 2233444444332110 0 111122333444444322111 111234555555553
Q ss_pred c---cchHHHHHHHHHHHHHHH
Q 019679 197 D---KVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 197 d---~~~~vr~~a~~~l~~~~~ 215 (337)
+ ....++..++.+|..+..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHhc
Confidence 3 345788888888887765
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.51 E-value=0.0014 Score=60.73 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=38.2
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--Hhh-HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh
Q 019679 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQS-LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~-llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 181 (337)
..++|.+. .++++++..|..|+.++..+++.-..... .+. +.+.+..++.|++..||..++.+|..++..-|.+
T Consensus 34 ~~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 45555543 35666666666666666666653222221 112 2233444555555555555555555555554443
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.36 E-value=0.025 Score=45.03 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=64.4
Q ss_pred HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh------
Q 019679 222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV------ 295 (337)
Q Consensus 222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~------ 295 (337)
+.+++++.+.++..+++..+|.-.+.++...+.. ........++.+..++.|+++.|-+.++.+...+....
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666655566666666666665554411 22344556666666666666666666666655554321
Q ss_pred -cH-----H---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679 296 -DQ-----S---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 296 -~~-----~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~ 334 (337)
++ + .....+...+..+....+..||..+.|.++.+....
T Consensus 128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 128 LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 00 1 112344444455556667889999999999987544
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.36 E-value=0.0098 Score=57.89 Aligned_cols=131 Identities=8% Similarity=0.027 Sum_probs=84.5
Q ss_pred HHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679 185 DKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 254 (337)
Q Consensus 185 ~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~ 254 (337)
++++..+..++++ .++.+|+.+.-+++.+....-. ....+.+...+.+.+...+...+..++.+||.++.
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3466667777765 4567999999999988865411 12244555666666666778888999999999875
Q ss_pred ccChHHHHhhHHHHHHhhcc-------CCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhh--CCCCccHHHHHHH
Q 019679 255 VMGSEITCSQLLPVVINASK-------DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS--EDPDVDVRFFATQ 325 (337)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~--~d~~~~vr~~a~~ 325 (337)
. ..++.+.+++. +....||.+|+.+|..+..... ..+.+.+..+. .+.+++||..|..
T Consensus 470 p--------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 470 P--------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp G--------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred h--------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 2 34555555553 2234688999999999975422 23333444443 3345677777766
Q ss_pred HHH
Q 019679 326 ALQ 328 (337)
Q Consensus 326 al~ 328 (337)
.|-
T Consensus 537 ~Lm 539 (1056)
T 1lsh_A 537 VFF 539 (1056)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.17 E-value=0.087 Score=44.53 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=118.2
Q ss_pred hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHH
Q 019679 123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSI 202 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 202 (337)
+.+...++.+..++-.-.+ .+.+.++|.+.++..|.+..+|..+++.+...+.. ...+...+++.+..+++|+++.|
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 3565566655554333223 34578888888888888888999988888877753 23345778888888888888888
Q ss_pred HHHHHHHHHHHHHHh--------C------hHH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-----h----
Q 019679 203 RDAAANNVKRLAEEF--------G------PDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-----S---- 258 (337)
Q Consensus 203 r~~a~~~l~~~~~~~--------~------~~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-----~---- 258 (337)
.+.++.+.+.+.... + ..| ....+-..+...+.+.+..+|..++.++..+..... .
T Consensus 117 ~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~ 196 (386)
T 3o2t_A 117 VKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPR 196 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 888888877765331 1 011 133455666677777889999999999888642110 0
Q ss_pred -----------------------HHHHhhHHHHHHhhccCCC--hhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhh
Q 019679 259 -----------------------EITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 311 (337)
Q Consensus 259 -----------------------~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l 311 (337)
+.....++..++..+.++. +..-.+++.+|+.+++.=+ .+...++++|..+
T Consensus 197 ~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP--~~~~rIl~aL~~l 272 (386)
T 3o2t_A 197 RQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP--MFMSEVIQAYETL 272 (386)
T ss_dssp GGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHH
T ss_pred ccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHhh
Confidence 0112356778888887542 3344566777777765422 2345666666654
No 118
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=97.14 E-value=0.049 Score=41.21 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=87.4
Q ss_pred hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC------CchHHHHHHHHHhhHhHhh--hChhhHHHHHHHHHHHH
Q 019679 123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 194 (337)
Q Consensus 123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 194 (337)
..|..|+.++..= .|- +.++|.+..++.+ .+...-.........+..+ +.-+.+..+++|.++.+
T Consensus 23 ~~r~~aL~sL~~D---~gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKE---SGL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHC---SSC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCh----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 4566666665433 222 4455655554422 2333333344444444433 23456778899988877
Q ss_pred ccc---cchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCc--chHHHHHHHHHHHHhccccChHHHHhhHHH
Q 019679 195 LKD---KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLP 267 (337)
Q Consensus 195 l~d---~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 267 (337)
+-. ....+|+.|++.++.++..+|.. .....+...+...+.|+ +...+..|+..+..+ |.+.....++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhc
Confidence 622 11289999999999999999763 34556777777777665 477888888877774 45656666777
Q ss_pred HHHhhcc
Q 019679 268 VVINASK 274 (337)
Q Consensus 268 ~l~~~l~ 274 (337)
.+-...+
T Consensus 172 ~l~~~~~ 178 (196)
T 4atg_A 172 HAEEYKR 178 (196)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7766554
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.07 E-value=0.048 Score=46.08 Aligned_cols=147 Identities=10% Similarity=0.042 Sum_probs=95.4
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 264 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 264 (337)
+.++..+-+.-...+ ..+-..++....+.-.-++. ..+.+++.+.++..|++..+|...+.+|...+.. ...+...
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~ 100 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLK 100 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344444443322222 24555555555544332333 4567888888888888888888888888776532 2234567
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhhhh--------c------H-HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIV--------D------Q-SVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~--------~------~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 329 (337)
+++.+..++.|+++.|-+.++.+...+.... + . ......+...+..+....+..||..|+|.++.
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 8888888888888888888888887776321 1 0 11223455555556666778899999999999
Q ss_pred HHHhhh
Q 019679 330 KDQVMM 335 (337)
Q Consensus 330 l~~~~~ 335 (337)
+.....
T Consensus 181 VIl~qS 186 (386)
T 3o2t_A 181 LIVTLS 186 (386)
T ss_dssp HHHHTS
T ss_pred HHHHhC
Confidence 886654
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.00 E-value=1.2 Score=36.57 Aligned_cols=209 Identities=12% Similarity=0.150 Sum_probs=130.1
Q ss_pred HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chh-----hH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHh
Q 019679 105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID-----LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 176 (337)
Q Consensus 105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 176 (337)
....++..+...+..=+.+.|+.+...+..+...- +.+ -+ .+.++..+...-++++...-.+. .+...++
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir 152 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIR 152 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHT
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHH
Confidence 34667778888887778888888888877776542 110 11 24566666666655543222111 0111110
Q ss_pred h--hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHH---HhhHHHHHHHhhcCcchHHHHHHHHH
Q 019679 177 Q--LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQA 248 (337)
Q Consensus 177 ~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~ 248 (337)
. +..........--++.+...++-+|-..|..++..+..... .+.+ .+.++..+..++.++++-.|..++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 0 00000111122245577888888999999888887765421 1111 34577888889999999999999999
Q ss_pred HHHhccccC-hHHH-----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-H-------HHHHhhhHHHHhhhCC
Q 019679 249 ISLLAPVMG-SEIT-----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------VVEKSIRPCLVELSED 314 (337)
Q Consensus 249 l~~l~~~~~-~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-~-------~~~~~i~~~l~~l~~d 314 (337)
++.+.-.-. .... ...-+-.+..+|.|++..++..|.+.+.-+...-.. . ...++++..|..+..|
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d 312 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQND 312 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999853211 1111 224577889999999999999999999988643211 1 1236788888888887
Q ss_pred C
Q 019679 315 P 315 (337)
Q Consensus 315 ~ 315 (337)
+
T Consensus 313 ~ 313 (341)
T 1upk_A 313 R 313 (341)
T ss_dssp C
T ss_pred C
Confidence 7
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.91 E-value=0.88 Score=34.37 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCC------ChhHHHHHHHhHHHhHhhh--chhhHHhhHHHHHHHH
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVEL 155 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~~l~~~~--~~~~~~~~llp~l~~~ 155 (337)
..|..|++.+..=.. ...++|.+..++.+. +...-...++....+.+.- ..+.....++|.+...
T Consensus 23 ~~r~~aL~sL~~D~g-------L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKESG-------LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHCSS-------CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-------hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 357888777765443 356778887776542 2333333444444444332 2345556788877766
Q ss_pred hcC---CchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHcccc--chHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679 156 AED---RHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPDWAMQHIVP 228 (337)
Q Consensus 156 ~~d---~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 228 (337)
+-. ....+|..++..++.++..++. ....+.+...+.+.+.|+ +.....+|+..+.. +|++.+..-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhc
Confidence 411 1117999999999999999976 346778888888888775 45778888888875 566666666778
Q ss_pred HHHHhhc
Q 019679 229 QVLEMIN 235 (337)
Q Consensus 229 ~l~~~~~ 235 (337)
.+....+
T Consensus 172 ~l~~~~~ 178 (196)
T 4atg_A 172 HAEEYKR 178 (196)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 8766654
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.15 E-value=0.33 Score=34.63 Aligned_cols=70 Identities=6% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH----HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679 266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 335 (337)
Q Consensus 266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~ 335 (337)
+..+.+.+...++.+...|+..|..+.+.+|..... ..++..|..+.+..++.|+..+...+...+..|+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 344444445555555555555555555555543221 2233333333333455555555555555555544
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.91 E-value=1.7 Score=33.64 Aligned_cols=133 Identities=8% Similarity=0.010 Sum_probs=84.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 228 (337)
Q Consensus 150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 228 (337)
..+..+..++....|..++..+......... .-++.+-.++. .++|.+-...+..++.+.... .+.+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 4445556666667777777777655433222 23344444454 467777777665566655432 223667
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
.+.....+++..+|..++..+ + .. ..+.....+++.+...+.|+..-||.+...+|..+++...
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCH
Confidence 788888888866665554432 2 22 2222345677888889999999999999999999988744
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.54 E-value=2.7 Score=34.63 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=67.8
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-- 182 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 182 (337)
..+.+.+..++.+|-.-|..++..+...=. .+.+ .+.++..+.++++++++-+|..++..++.+...-....
T Consensus 167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM 246 (341)
T 1upk_A 167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIM 246 (341)
T ss_dssp GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHH
Confidence 345567777778888888777766643210 1111 13456666777788888888888888887764432211
Q ss_pred ----HHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679 183 ----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215 (337)
Q Consensus 183 ----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 215 (337)
..+.-+..++.+|+|++..++..|...+.-+..
T Consensus 247 ~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 247 TKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 123466777888888888888888777776653
No 125
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.48 E-value=2.1 Score=33.18 Aligned_cols=130 Identities=12% Similarity=-0.000 Sum_probs=55.4
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChhhHHhhhHH
Q 019679 33 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLP 111 (337)
Q Consensus 33 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 111 (337)
..+.++..++..+.|..++..+......+.++. ++.+...+. .++|.+--..+.+++.+.... .+.+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE-----VVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-----HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH-----HHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 334444444555555555555554433333221 122222221 345554444444344433211 122344
Q ss_pred HHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHh
Q 019679 112 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 176 (337)
Q Consensus 112 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 176 (337)
.+.+...|++.-+|+.++..+-... . +...+.+++.+.....|++.-||.++.-.|..++.
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~---~-~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLK---E-KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCG---G-GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH---H-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 4555555555555555554331111 1 11113344444445555555555555555555443
No 126
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.46 E-value=1.2 Score=31.97 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=40.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhh
Q 019679 265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSED------PDVDVRFFATQALQSKDQVM 334 (337)
Q Consensus 265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~ 334 (337)
.+..+.+-+...++.+...|+..|..+.+.+|..+. ...++..|.+++.+ .+..||..+.+.+...+..|
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344555555666666666666666666666665432 12344445555443 34566666666666666665
Q ss_pred hC
Q 019679 335 MS 336 (337)
Q Consensus 335 ~~ 336 (337)
+.
T Consensus 129 ~~ 130 (149)
T 3g2s_A 129 PE 130 (149)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.14 E-value=1.8 Score=31.68 Aligned_cols=74 Identities=8% Similarity=0.097 Sum_probs=56.5
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC-CChhHHHHHHHHHHHHhhhhcHH
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS 298 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~ 298 (337)
..+..|...+++++.++...|+..+..+...+|..+. ...++..+..++.. .++.||..+...+..++..++..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566777778888899999999999999999887543 13466666666654 56799999999999998887653
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.87 E-value=2.5 Score=30.05 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=60.6
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
..+++|..=...|..+..=. ....+.+..+.+-+...++.+...|+..+..+++..|.... ...++..+.
T Consensus 18 l~~~dw~~ileicD~I~~~~------~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQSR------TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTTST------THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCC------cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 45577776666666554311 12345667777777788888888888888888888775432 133444444
Q ss_pred HHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679 154 ELAEDRHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 154 ~~~~d~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.+++..+..||.-+++.+...+..++.
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 555445666777777776666665543
No 129
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=90.99 E-value=4.6 Score=31.49 Aligned_cols=132 Identities=10% Similarity=0.067 Sum_probs=71.3
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHH-HHHHHHHHHhChHHHHhhHHH
Q 019679 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAA-NNVKRLAEEFGPDWAMQHIVP 228 (337)
Q Consensus 151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~-~~l~~~~~~~~~~~~~~~l~~ 228 (337)
.+..+..+.....|..++..+....+....+.. +.+-.++ ..++|.+-...+ ..++.+.... + +...+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l-----~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p----~~~~~ 134 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETHI-----PFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-P----ELISA 134 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH-----HHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-G----GGGGG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHccCCChHHHHHhhHHHHHHHHHHC-H----HHHHH
Confidence 344455555555666666666543333333221 1111222 356676665543 4455554432 1 12445
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
.+.....|++..+|..++..+ +... .+.-...+++.+...+.|+..-||.+...+|..+++...
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~--l~~~--~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQ--LKYK--QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTT--TTCG--GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhcCCchHHHHHHHHHH--HHHH--hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 666777777755554444332 2221 111123566677778888888888888888888887643
No 130
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=89.89 E-value=5.8 Score=30.91 Aligned_cols=188 Identities=12% Similarity=0.085 Sum_probs=107.0
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHH
Q 019679 76 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 155 (337)
Q Consensus 76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~ 155 (337)
..+.=..|.+|..+-+........ . .......+..+..+...+.|..|+..+....+...++. ++.+..+
T Consensus 34 ~~lGVr~P~lR~laK~~~k~~~~~-~----~~~~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~ 103 (232)
T 3jxy_A 34 LFLGIQTPERRQLLKDIIQIHTLP-D----QKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEEL 103 (232)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHCCC-C----GGGHHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHH
T ss_pred eeeccChHHHHHHHHHHHHhcccc-c----hhhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHH
Confidence 455556677777766655443220 0 11223456666667777888888887765544443332 2333333
Q ss_pred h-cCCchHHHHHHH-HHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh
Q 019679 156 A-EDRHWRVRLAII-EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 233 (337)
Q Consensus 156 ~-~d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 233 (337)
+ ...+|.+-...+ ..++.+.... ++ .+.+.+..++.|++..+|..++..+-.. . .+.....+++.+...
T Consensus 104 l~~~~nWd~~D~~a~~~~g~~~~~~-p~----~~~~~l~~W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~ 174 (232)
T 3jxy_A 104 IVTKSWWDSVDSIVPTFLGDIFLKH-PE----LISAYIPKWIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQL 174 (232)
T ss_dssp HTSSCCHHHHHHHTTTHHHHHHHHC-GG----GGGGTHHHHHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHH
T ss_pred HccCCChHHHHHhhHHHHHHHHHHC-HH----HHHHHHHHHhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHh
Confidence 3 356777766553 3334443321 11 1445677788888888888777654221 1 111123566777788
Q ss_pred hcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679 234 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289 (337)
Q Consensus 234 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 289 (337)
+.|+.+.+|.+..++|..++... .+.+.+++.+- .-.+..++.|++-|+
T Consensus 175 ~~d~~~yV~kAvgW~Lr~~~k~~-----p~~v~~fl~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 175 HSSKEFFIQKAIGWVLREYAKTN-----PDVVWEYVQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHS--CCCHHHHHHHTTTTH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhC-----HHHHHHHHHHC--CCCHHHHHHHHHhcc
Confidence 88999999999999998877542 23344444442 333455555555443
No 131
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=89.34 E-value=3.4 Score=29.98 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=53.6
Q ss_pred hHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChHHHH----hhHHHH-HHhhcc---CCChhHHHHHHHHHHHHhhhh
Q 019679 225 HIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITC----SQLLPV-VINASK---DRVPNIKFNVAKVLQSLIPIV 295 (337)
Q Consensus 225 ~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~l~~~-l~~~l~---d~~~~vr~~a~~~l~~i~~~~ 295 (337)
..+..+..-++ .++.++...|+..+..+...+|..+.. ..++.- +.+.+. ++...||..+...+..++..+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 45666777776 478888899999999999999876432 235555 555553 344689999999999998877
Q ss_pred cH
Q 019679 296 DQ 297 (337)
Q Consensus 296 ~~ 297 (337)
+.
T Consensus 133 ~~ 134 (157)
T 1elk_A 133 RS 134 (157)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.24 E-value=5.2 Score=29.47 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=57.8
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC------CChhHHHHHHHHHHHHhhh
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~~ 294 (337)
..+..|...+++++.++...|+..+..+...+|..+. ...++.-+..++.. ....||..+...+..++..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999999998886543 23466777777652 3579999999999999988
Q ss_pred hcHH
Q 019679 295 VDQS 298 (337)
Q Consensus 295 ~~~~ 298 (337)
++..
T Consensus 130 f~~~ 133 (171)
T 1juq_A 130 LPEE 133 (171)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 8753
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.02 E-value=5.3 Score=29.19 Aligned_cols=97 Identities=9% Similarity=0.118 Sum_probs=63.0
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
..+++|..-...|..+..=.. ...+.+..+.+-++..++.+...|+..+..+++..|.... ...++..+.
T Consensus 28 ~~~~Dw~~~leicD~I~~~~~------~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGSTPN------GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp CSSCCHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 345777766666666654211 2345566777778888899999999999999888875322 133445555
Q ss_pred HHhcC-CchHHHHHHHHHhhHhHhhhCh
Q 019679 154 ELAED-RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 154 ~~~~d-~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.++.. .+..||.-+++.+......++.
T Consensus 102 ~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 102 AVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 55443 4567777777777777766644
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.75 E-value=6 Score=28.34 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=58.6
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC------CChhHHHHHHHHHHHHhhh
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~~ 294 (337)
..+..+..-+++++.++...|+..+..+...+|..+. ...++..+.+++.+ .+..||..+...+..++..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677777889999999999999999999997643 23577777877764 3679999999999999988
Q ss_pred hcHH
Q 019679 295 VDQS 298 (337)
Q Consensus 295 ~~~~ 298 (337)
++..
T Consensus 118 f~~~ 121 (148)
T 1mhq_A 118 FPED 121 (148)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 7643
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.89 E-value=9.3 Score=29.63 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=64.7
Q ss_pred hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHH
Q 019679 77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 152 (337)
Q Consensus 77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l 152 (337)
...+++|..=...+..+..= ..| ..+.+..+.+-++..++.+...|+..+..+++..|.... ...++..+
T Consensus 20 ~~~~~dw~~ileicD~I~~~--~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l 93 (226)
T 3zyq_A 20 LLLETDWESILQICDLIRQG--DTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93 (226)
T ss_dssp TCSSCCHHHHHHHHHHHHTT--SSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhCC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence 44567888777777776531 112 355677788888889999999999999999998885422 22344444
Q ss_pred HHHhc-CCchHHHHHHHHHhhHhHhhhCh
Q 019679 153 VELAE-DRHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 153 ~~~~~-d~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
..+++ ..+..||.-+++.+...+..+..
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 44442 34456777777777777665533
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.52 E-value=11 Score=29.20 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=48.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh
Q 019679 29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD 103 (337)
Q Consensus 29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~ 103 (337)
.+.+..+.+-+.+.++.+...|+..|..+.++++.... ...++..+.++++ .+++.||.-+++.+...+..+..+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46777777888888888888888888888887776421 1223333333332 345677777777777776655443
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.44 E-value=8.2 Score=27.65 Aligned_cols=97 Identities=7% Similarity=0.034 Sum_probs=66.5
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
..+++|..=...|..+..=. ....+.+..+.+-+...++.+...|+..+..+++..|.... ...++..+.
T Consensus 24 l~~~dw~~ileicD~I~~~~------~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~ 97 (149)
T 3g2s_A 24 NKELDWASINGFCEQLNEDF------EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI 97 (149)
T ss_dssp CSSCCHHHHHHHHHHGGGSS------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 34577776666666544321 12345667777778888899999999999999988886432 244666677
Q ss_pred HHhcC------CchHHHHHHHHHhhHhHhhhCh
Q 019679 154 ELAED------RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 154 ~~~~d------~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
+++.+ .+..||.-+++.+...+..++.
T Consensus 98 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 98 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 77653 4567888888888888777644
No 138
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=84.94 E-value=26 Score=32.99 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcC---CChhHHHHHHHhHHHhHhhh
Q 019679 66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVI 139 (337)
Q Consensus 66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~ 139 (337)
+.+.+.|.+......++..+...+..++..++...+ .+.....++..+...+.. .++.-..++++++..++..+
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777777765444 122334444444444544 45555556666666666544
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=82.99 E-value=1.8 Score=37.62 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHHhcCcccChhhHH---hhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679 81 SSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 81 ~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 137 (337)
.++.+-..||.=+|.+++..+..... -.....+++++.+++++||..|+.++..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 36778888888888888877643321 2457788889999999999999999887754
No 140
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=81.95 E-value=11 Score=26.36 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=43.1
Q ss_pred hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhh
Q 019679 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSI 304 (337)
Q Consensus 225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i 304 (337)
.++|.+...++|.||.+-...+..+.. +.+.++|.+...+...+..=+. ..+..+...+..+ ....+
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~---------~~~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~-~~~~l 97 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVL---------HQSIAMPHILTILQGNDIMWKY---WVIKLMIPYLIYP-NKQLV 97 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHH---------THHHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHH---------ccHhhHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH-HHHHH
Confidence 466666666666666665555444443 1234445554444333332222 2233333333332 23455
Q ss_pred hHHHHhhhCCC-----CccHHHHHHHHHHH
Q 019679 305 RPCLVELSEDP-----DVDVRFFATQALQS 329 (337)
Q Consensus 305 ~~~l~~l~~d~-----~~~vr~~a~~al~~ 329 (337)
.|-|.+++..+ ..+|...|.+-|..
T Consensus 98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 98 KSELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 55565554433 23455555554443
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.73 E-value=17 Score=27.89 Aligned_cols=74 Identities=7% Similarity=0.044 Sum_probs=43.6
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH----HhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccC
Q 019679 28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI----QHILPCVKELSS-DSSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~----~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~ 101 (337)
..+.+..+.+-+.+.++.+...|+..|..+.+++++.... ..++..+.++++ .++..||.-+++.+......++
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777778888888887777777776553211 113333333332 3456677766666666554443
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=79.69 E-value=16 Score=26.86 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=68.7
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
...++|..=...|..+..=.. ...+.+..+.+-++..++.|...|+..+..+++..|.... ...++..+.
T Consensus 26 l~~~Dw~~ileicD~I~~~~~------~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINKELE------GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp CSSCCHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCc------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 346788776666666654321 2345667788888888999999999999999988875332 244666677
Q ss_pred HHhcC------CchHHHHHHHHHhhHhHhhhCh
Q 019679 154 ELAED------RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 154 ~~~~d------~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.++.. .+..||.-+++.+......++.
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 76652 3568888888888888877754
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.25 E-value=15 Score=26.26 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=68.7
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 153 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~ 153 (337)
..+++|..=...|..+..=.. ...+.+..+.+-++..++.+...|+..+..+++..|.... ...++..+.
T Consensus 14 l~~~dw~~~leicD~I~~~~~------~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTDPN------GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHSSH------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCc------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 446778766666666654321 2345667777788888999999999999999998886432 345677777
Q ss_pred HHhcC------CchHHHHHHHHHhhHhHhhhCh
Q 019679 154 ELAED------RHWRVRLAIIEYIPLLASQLGV 180 (337)
Q Consensus 154 ~~~~d------~~~~vr~~~~~~l~~l~~~~~~ 180 (337)
.++.+ .+..||.-+++.+...+..++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77654 3668888888888888877654
No 144
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=79.13 E-value=12 Score=26.52 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=37.3
Q ss_pred hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH--HhhhHHHHhhh-----CC------CCccHHHHHHHHHHH
Q 019679 263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--KSIRPCLVELS-----ED------PDVDVRFFATQALQS 329 (337)
Q Consensus 263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~--~~i~~~l~~l~-----~d------~~~~vr~~a~~al~~ 329 (337)
..+++++.+-|.++.+.++.-+++.|.-++.+=++.+.. ..-...+..+. .| ...+||..|.+.+..
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 566677777777777777666666666666443322111 01111222221 12 225788888887776
Q ss_pred HH
Q 019679 330 KD 331 (337)
Q Consensus 330 l~ 331 (337)
+-
T Consensus 128 l~ 129 (140)
T 1vdy_A 128 IF 129 (140)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 145
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.19 E-value=33 Score=29.67 Aligned_cols=251 Identities=11% Similarity=0.086 Sum_probs=129.0
Q ss_pred CCcHHHHHHHHHHHHhcCcc--c----ChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chh-hHHhhHHHH
Q 019679 80 DSSQHVRSALATVIMGMAPI--L----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID-LLSQSLLPA 151 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~--~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~llp~ 151 (337)
|++|---..+.+.+..+... + .+......++-.++.++..+|+.-|...-..+..+-..+ +.. .+.+.+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45675455555555554321 2 223333567778888999999999998888887775543 322 233344444
Q ss_pred HHHHhcC-CchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchH-HHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 152 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 152 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
+..++-+ ....--...++.++.+...+. ++.+..-+...++.+.+..... --.....++.++.+. ++. ....+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~-L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DST-LTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGG-GHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcH-hHHHH
Confidence 4444422 222223355667777766653 2334444445555555443322 223444455555442 122 22334
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh---HHHHHHhhccCCChhHHHHHHHHHHHH--hhhhc--HHH
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ---LLPVVINASKDRVPNIKFNVAKVLQSL--IPIVD--QSV 299 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~i--~~~~~--~~~ 299 (337)
+..++..---.+..-....+.-+..+.+..+...+... ++..+..++..++..|-.+|+..+..= ...+. ...
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~ 365 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK 365 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhh
Confidence 44443333334444555566666677777766655443 445556667777777766666433211 11111 112
Q ss_pred HHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHHH
Q 019679 300 VEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 300 ~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~~ 332 (337)
+...+.|.|.+..+ -.+..||..+..++..+.+
T Consensus 366 IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 366 ILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 22344444433222 2355678777777765543
No 146
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=77.36 E-value=35 Score=29.52 Aligned_cols=208 Identities=11% Similarity=0.097 Sum_probs=106.2
Q ss_pred CCCChHHHHHHHHHHHHHHHH--hCCCC----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-H-HHHHhhhH
Q 019679 1 MDKSWRVRYMVANQLYELCEA--VGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-E-LAIQHILP 72 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~--~~~~~----~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~-~~~~~ll~ 72 (337)
+|++|---+.+-+.+-.+... +.+.. ....++-.+..++.++|+.-|...-..|-.+-..+.. - .+.+.+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888777777777766543 33332 2234677778888899999999888888766543322 1 12222222
Q ss_pred hhHHhcCCCcH-HHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhh
Q 019679 73 CVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQS 147 (337)
Q Consensus 73 ~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~ 147 (337)
.+.+.+.+... .-=...++.+|.+...+. ++.....+...++.+.+.+. ..--..-..++.++.+.- ..+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHH
Confidence 22222222111 111345666666654332 22233334444444444332 122222333333333321 112233
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHH---HHHHHHHHccccchHHHHHHHHHH
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNV 210 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l 210 (337)
++..+.+...-.+..-....+.-+..+....++..+... +...+..+++.++..|-+.|+..+
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w 350 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 350 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445555554444444445556666777776666665443 333344566777777777776543
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.52 E-value=24 Score=27.14 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=42.9
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH----hhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhc
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC----SQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
...+..|..-+++++..+...|+..+..+....|..+.. ..++..+..++. ..+..||..+...+..++..++
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 345666666667777777777777777777666654321 134444444443 3445666666666666665544
No 148
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=74.09 E-value=40 Score=28.56 Aligned_cols=207 Identities=10% Similarity=0.094 Sum_probs=91.9
Q ss_pred CCCChHHHHHHHHHHHHHHHH--hC----CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-H-HHHHhhhH
Q 019679 1 MDKSWRVRYMVANQLYELCEA--VG----PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-E-LAIQHILP 72 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~--~~----~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~-~~~~~ll~ 72 (337)
+|++|---+.+-+.+-.+... +. ........+-.+..++.++|+.-|......|-.+-..+.. . .+.+.+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777666666666665432 22 2222344666677788888888888887777655433221 1 11222222
Q ss_pred hhHHhcCCCcH-HHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhh
Q 019679 73 CVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQS 147 (337)
Q Consensus 73 ~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~ 147 (337)
.+.+...+... .-=...++.+|.+...+. ++.....+...++.+.+.+. ..--..-..++.++.+. ...+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHH
Confidence 22223222211 111234555555544332 22222223333333333222 11111222222222221 0111223
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH---HHHHHHccccchHHHHHHHHH
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG---ALCMQWLKDKVYSIRDAAANN 209 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~ 209 (337)
++..+.+...-.+..-....+..+..+....+++.+..... ..+..+++.++..|-+.|+..
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~ 361 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYY 361 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33333333333333333444555666666665555443323 333455566666666666544
No 149
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=73.66 E-value=20 Score=25.00 Aligned_cols=92 Identities=11% Similarity=-0.007 Sum_probs=47.3
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 109 (337)
.++|.+.++++|.|+-+....+..|..+.+ .++|.+.+.++..+..=..-.+. .+...++.+ ....+
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~~~---------~l~p~I~~vl~s~D~~W~ywil~---~lv~~~~~~-~~~~l 97 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVLHQS---------IAMPHILTILQGNDIMWKYWVIK---LMIPYLIYP-NKQLV 97 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHHTHH---------HHHHHHHHHHHSSCHHHHHHHHH---HHGGGCCHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHccH---------hhHHHHHHHHHcCChHHHHHHHH---HHHHcCCHH-HHHHH
Confidence 577788888888887777777776665433 23344444433333322233333 223333322 33456
Q ss_pred HHHHHHhhcCC-----ChhHHHHHHHhHHH
Q 019679 110 LPIFLSLLKDE-----FPDVRLNIISKLDQ 134 (337)
Q Consensus 110 ~~~l~~~l~d~-----~~~vr~~a~~~l~~ 134 (337)
.+-+.+++..+ ..+|...|-.-|..
T Consensus 98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 98 KSELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 66666666543 23444444444433
No 150
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=73.16 E-value=6 Score=30.91 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=43.3
Q ss_pred HhhHHhcCCCcHHHHHHHHH----HHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh
Q 019679 72 PCVKELSSDSSQHVRSALAT----VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 139 (337)
Q Consensus 72 ~~l~~l~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 139 (337)
+.+.+...|++.-+|.++.. .+..+.....++...+.++..+...+.|++..|++++.-.|..++...
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 34455666666666666665 555544333334455667777777777777788877777777777663
No 151
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=72.32 E-value=45 Score=28.37 Aligned_cols=208 Identities=10% Similarity=0.075 Sum_probs=104.0
Q ss_pred CCCChHHHHHHHHHHHHHHHH--hC----CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-H-HHHhhhH
Q 019679 1 MDKSWRVRYMVANQLYELCEA--VG----PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-L-AIQHILP 72 (337)
Q Consensus 1 ~D~~~~vR~~~~~~l~~~~~~--~~----~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~-~~~~ll~ 72 (337)
+|++|---+.+-+.+-.+... +. ........+-.+..++.++|+.-|...-..|-.+-..+... . +.+.+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 367888777777777666543 11 12223345666778888999999998888887665433221 1 1122222
Q ss_pred hhHHhcCCCcH-HHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhh
Q 019679 73 CVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQS 147 (337)
Q Consensus 73 ~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~ 147 (337)
.+...+.++.. .-=...++.+|.+...+. ++.....+...++-+-+-+. ..--.....++.++.+.- ..+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD--p~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC--chhHHH
Confidence 22222221111 111245555565554332 12222333444444443322 122223333333333321 112233
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHH---HHHHHHHccccchHHHHHHHHHH
Q 019679 148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNV 210 (337)
Q Consensus 148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l 210 (337)
++..+.....-.+..-....+.-+..+....++..+.... ...+..++.+++..|-+.|+...
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4445555544455545555666677777777666554433 33334556777777777766543
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=71.53 E-value=24 Score=24.90 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=38.3
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh------HHHHHHhhc--------cCCChhHHHHHHHHHH
Q 019679 224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ------LLPVVINAS--------KDRVPNIKFNVAKVLQ 289 (337)
Q Consensus 224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~------l~~~l~~~l--------~d~~~~vr~~a~~~l~ 289 (337)
..+++.|..-+++.++.++..++..|..++..-... |... ++-.+..+- .|....||..|-.++.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 456777777777777777777777777776533333 2211 112222111 1223578888877777
Q ss_pred HHh
Q 019679 290 SLI 292 (337)
Q Consensus 290 ~i~ 292 (337)
.+.
T Consensus 127 ll~ 129 (140)
T 1vdy_A 127 AIF 129 (140)
T ss_dssp HHT
T ss_pred HHh
Confidence 664
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=71.34 E-value=30 Score=27.27 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=51.8
Q ss_pred cchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHH----HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679 29 SDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMA 97 (337)
Q Consensus 29 ~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 97 (337)
-.+.|++.....+ +.+-+|-+++..++.+.+.-+++. ....++|...+..+-.+.--+..|...+.++.
T Consensus 100 lyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 100 LFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp GGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 3578887655554 346789999999999998766652 23557888888888888888888888887765
No 154
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=70.67 E-value=43 Score=27.49 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=10.0
Q ss_pred hhhHHHHHHhhcCCCh
Q 019679 107 EQLLPIFLSLLKDEFP 122 (337)
Q Consensus 107 ~~l~~~l~~~l~d~~~ 122 (337)
+.+.+.+..++.|...
T Consensus 118 ~el~~~~~~L~~d~~g 133 (333)
T 3bwt_A 118 DSLRPYTVQLSKDLNG 133 (333)
T ss_dssp HHHGGGHHHHHTSTTH
T ss_pred HHHHHHHHHHhcCCcc
Confidence 4555666677777653
No 155
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=69.37 E-value=24 Score=27.46 Aligned_cols=71 Identities=13% Similarity=-0.044 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCcchHHHHHHHH----HHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679 226 IVPQVLEMINNPHYLYRMTILQ----AISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296 (337)
Q Consensus 226 l~~~l~~~~~~~~~~vR~~~~~----~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 296 (337)
..+.+.....+++...|.+++. .+..+....-.+.....+++.+...+.|+..-||.+...+|..++....
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 4556667777777555555544 3333111111234566778888888889889999999999988887644
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=68.10 E-value=56 Score=27.79 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=139.1
Q ss_pred CCcHHHHHHHHHHHHhcCcc--cCh----hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chhh-HHhhHHHH
Q 019679 80 DSSQHVRSALATVIMGMAPI--LGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL-LSQSLLPA 151 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~-~~~~llp~ 151 (337)
|++|---...-+.+..+... +.+ ......++--++.++..+|+.-|...-..+..+-..+ +... +.+.+-..
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni 174 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 55665455555555554332 221 2222346666888999999999999888888765443 2222 23333344
Q ss_pred HHHHhcC-CchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchH-HHHHHHHHHHHHHHHhChHHHHhhH
Q 019679 152 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 152 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
+..++-+ ....--...++.++.+...+. ++.+..-+...++.+-+.+... --.....++.++.+. ++. ....+
T Consensus 175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~-L~~~v 252 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DST-LTEPV 252 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGG-GHHHH
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-Cch-hHHHH
Confidence 4444322 222223356777777777663 2234444555555555554332 234555566665543 222 23334
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh---HHHHHHhhccCCChhHHHHHHHHHH-----HHhhhhcHH
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ---LLPVVINASKDRVPNIKFNVAKVLQ-----SLIPIVDQS 298 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~-----~i~~~~~~~ 298 (337)
+..+...---.+..-....+.-+..+.+..+.+.+... ++..+..++..++..|-.+|...+. .+.... .+
T Consensus 253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n-~~ 331 (403)
T 3fga_B 253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-AA 331 (403)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT-HH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHh-HH
Confidence 44444444445556666677777778887777666543 4555667778888888777764431 111111 12
Q ss_pred HHHHhhhHHHHhhhCC-CCccHHHHHHHHHHHHHH
Q 019679 299 VVEKSIRPCLVELSED-PDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 299 ~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~l~~ 332 (337)
.+...+.|.|.+..+. .+..||..+..++..+.+
T Consensus 332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3445566666554333 466788888888877654
No 157
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=67.31 E-value=52 Score=27.15 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=69.8
Q ss_pred HhcCCChHHHHHHHHHhHHHHHH---hhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCccc-ChhhH--HhhhH
Q 019679 37 RLLRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GKDAT--IEQLL 110 (337)
Q Consensus 37 ~~~~d~~~~vR~~a~~~l~~~~~---~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~--~~~l~ 110 (337)
+-+.+.+...++.++..|..+.. .+..+.+...-+..+.+...+.+......++.++..+..+. |-+.. ....+
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI 204 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTI 204 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHH
Confidence 44445566667777777777432 12233344556777777888888899999999999987642 22122 24577
Q ss_pred HHHHHhhcCCChhHHHHHHHhHHHhHhhh
Q 019679 111 PIFLSLLKDEFPDVRLNIISKLDQVNQVI 139 (337)
Q Consensus 111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 139 (337)
..+..++...+..|-+.|++-|..++...
T Consensus 205 ~~lyslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 205 QWLYTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHccC
Confidence 77788888777888888888888887653
No 158
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=66.34 E-value=89 Score=29.47 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=72.7
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhcCC---CcHHHHHHHHHHHHhcCcccCh-h
Q 019679 30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSD---SSQHVRSALATVIMGMAPILGK-D 103 (337)
Q Consensus 30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~~-~ 103 (337)
.+.|.+...+.+.+..+...+..++..++-.-+ ++.+...++..+-..++. .++.--.++++++..++..+-. .
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 378888899999999999999999988877543 155555565555555555 6677667888888888754332 1
Q ss_pred hHHhhhHHHHHHhhc--C-CChhHHHHHHHhHHHhHhhh
Q 019679 104 ATIEQLLPIFLSLLK--D-EFPDVRLNIISKLDQVNQVI 139 (337)
Q Consensus 104 ~~~~~l~~~l~~~l~--d-~~~~vr~~a~~~l~~l~~~~ 139 (337)
....++.+++..++. | +|+.--..+++.+..+...+
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
Confidence 234566666666554 3 33444455666666665543
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.42 E-value=35 Score=24.54 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=62.0
Q ss_pred cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHH-
Q 019679 78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPA- 151 (337)
Q Consensus 78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~- 151 (337)
..+++|..=...|..+..=. ....+.+..+.+-++ ..++.+...|+..+..+++..|.... ...++..
T Consensus 29 l~~~Dw~~~leicD~I~~~~------~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~ 102 (157)
T 1elk_A 29 LQSEDWALNMEICDIINETE------EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV 102 (157)
T ss_dssp CSSCCHHHHHHHHHHHHHSS------SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCC------ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence 44577877666666664421 123455667777776 57888999999999999988875432 2335554
Q ss_pred HHHHhc---CCchHHHHHHHHHhhHhHhhhC
Q 019679 152 IVELAE---DRHWRVRLAIIEYIPLLASQLG 179 (337)
Q Consensus 152 l~~~~~---d~~~~vr~~~~~~l~~l~~~~~ 179 (337)
+..++. ++...||.-+++.+...+..++
T Consensus 103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp THHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 455543 2345788888877777776664
No 160
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=64.48 E-value=35 Score=24.16 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=54.9
Q ss_pred HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679 223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294 (337)
Q Consensus 223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 294 (337)
.+.++..+.+.+.......|..++..+..+.+..|.+ .|...+.+.+......-++.+|....+.+..+.+.
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 4557777777777777889999999999998888754 34555667777766666689999999999998744
No 161
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=63.64 E-value=60 Score=26.59 Aligned_cols=135 Identities=13% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhcCcccCh-hhHHhhhHHHHHH-hhcC---CChhHHH-HHHHhHHHhHhhhch----h--hHHhhHHH
Q 019679 83 QHVRSALATVIMGMAPILGK-DATIEQLLPIFLS-LLKD---EFPDVRL-NIISKLDQVNQVIGI----D--LLSQSLLP 150 (337)
Q Consensus 83 ~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l~d---~~~~vr~-~a~~~l~~l~~~~~~----~--~~~~~llp 150 (337)
..||+..++.+........+ +...+.++|.++. .+.| +.|+.|. .++..+..++..++. . .+.+.++.
T Consensus 43 R~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34667777777766654433 2234555665554 3333 3344442 233444444444432 1 11223333
Q ss_pred HHHHHhc---CCchHHHHHHHHHhhHhHhhh-------ChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC
Q 019679 151 AIVELAE---DRHWRVRLAIIEYIPLLASQL-------GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 218 (337)
Q Consensus 151 ~l~~~~~---d~~~~vr~~~~~~l~~l~~~~-------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 218 (337)
.-.++++ ++.+.-|......+..+...+ +++. ...+++.+....+++..+|-+.++..+..+.+.++
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~-fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQ-FKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 3344554 477899999999998888765 2322 34578888899999999999999999988888774
No 162
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=59.93 E-value=45 Score=23.88 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=58.4
Q ss_pred cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHH----hhHHHH-H
Q 019679 157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ-V 230 (337)
Q Consensus 157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~----~~l~~~-l 230 (337)
..++|..-..++..+.. .- .-....+..+.+.+.. .++.+...|+..+....+..|..+.. ..++.- +
T Consensus 30 ~~~Dw~~ileicD~In~---~~---~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L 103 (152)
T 3rru_A 30 QTEDWGQFMHICDIINT---TQ---DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENL 103 (152)
T ss_dssp CSCCHHHHHHHHHHHHH---ST---THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTT
T ss_pred CCccHHHHHHHHHHHhC---CC---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence 45667644444443332 11 1123466677777764 57777777888999988888865432 223332 3
Q ss_pred HHhhcCc---chHHHHHHHHHHHHhccccChH
Q 019679 231 LEMINNP---HYLYRMTILQAISLLAPVMGSE 259 (337)
Q Consensus 231 ~~~~~~~---~~~vR~~~~~~l~~l~~~~~~~ 259 (337)
..++.++ +..||..++..+..++..+...
T Consensus 104 ~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 104 VKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp GGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 3444432 3468888888888888777653
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=55.44 E-value=75 Score=25.09 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=32.5
Q ss_pred HHHHHHHHhcC-CchHHHHHHHHHhhHhHhhhChhhH----HHHHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679 148 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRL 213 (337)
Q Consensus 148 llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 213 (337)
+.|.+....++ +.+.+|-+++..++.+++.-+.+.. ..+++|.+++.++-.+..-+..|.-.+.++
T Consensus 102 LyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 102 LYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp THHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 44544433332 2345666666666666655333331 123555555555555555444444444433
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=51.43 E-value=97 Score=25.16 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhccc-cChHH---HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhh
Q 019679 239 YLYRMTILQAISLLAPV-MGSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVEL 311 (337)
Q Consensus 239 ~~vR~~~~~~l~~l~~~-~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l 311 (337)
...+..+++++..+... .|... ..+.+++.+...+.+++..+|.+++..+-+++-.... ..-...+...+...
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 44566666666665322 22221 1235666777777778889998888887777644321 01123355555554
Q ss_pred h-CCCCccHHHHHHHHHHHHHH
Q 019679 312 S-EDPDVDVRFFATQALQSKDQ 332 (337)
Q Consensus 312 ~-~d~~~~vr~~a~~al~~l~~ 332 (337)
. ...+.+..+.+.-||+.+..
T Consensus 242 l~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHHHHHHHHHHHHHh
Confidence 3 34577888888888888774
No 165
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.46 E-value=1.1e+02 Score=25.34 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=67.4
Q ss_pred cCCChhHHHHHHHhHHHhHh-h--hchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-ChhhH--HHHHHHHH
Q 019679 118 KDEFPDVRLNIISKLDQVNQ-V--IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFF--DDKLGALC 191 (337)
Q Consensus 118 ~d~~~~vr~~a~~~l~~l~~-~--~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~--~~~l~~~l 191 (337)
.+.+...++.++..|..+.+ . +-.+.+...=+..+.....+.+......++.++..+..+. |.+.. .+.++..+
T Consensus 128 ~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~l 207 (339)
T 3dad_A 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWL 207 (339)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHH
Confidence 34556667777777777443 1 2234444445666777777778888888888888887653 32211 24577777
Q ss_pred HHHccccchHHHHHHHHHHHHHHHHh
Q 019679 192 MQWLKDKVYSIRDAAANNVKRLAEEF 217 (337)
Q Consensus 192 ~~~l~d~~~~vr~~a~~~l~~~~~~~ 217 (337)
..++......|-+.|+..|..+...-
T Consensus 208 yslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 208 YTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCccHHHHHHHHHHHHHHHccC
Confidence 78888778888888888888777654
No 166
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=49.65 E-value=66 Score=22.72 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=63.1
Q ss_pred HhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhH
Q 019679 72 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSL 148 (337)
Q Consensus 72 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l 148 (337)
..|..|..++-+.+......++.... ..+.++..+.+.+....+.-+..++..+..+++..|.+ .+.+.+
T Consensus 14 ~~L~~L~~nSk~~I~~LT~~a~~~~~-------~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l 86 (144)
T 1sz9_A 14 SILEELTFNSRPIITTLTKLAEENIS-------CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNL 86 (144)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTH
T ss_pred HHHHHhccccHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 33444433444555555555444332 34677788888888788999999999999999887753 233445
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679 149 LPAIVELAEDRHWRVRLAIIEYIPLLASQ 177 (337)
Q Consensus 149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 177 (337)
.+.+.......+..+|....+.+...-+.
T Consensus 87 ~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 87 FNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 55555555555667777777777766644
No 167
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=47.67 E-value=1.4e+02 Score=26.04 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=88.7
Q ss_pred cccchHHHHHHhc-CC-ChH--HHHHHHHHhHHHHHHhhCHHHHHHhh-hHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679 27 TRSDVVPAYVRLL-RD-NEA--EVRIAAAGKVTKICRILNPELAIQHI-LPCVKELSSDSSQHVRSALATVIMGMAPILG 101 (337)
Q Consensus 27 ~~~~l~~~l~~~~-~d-~~~--~vR~~a~~~l~~~~~~~~~~~~~~~l-l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 101 (337)
..++++|.+.+.+ .+ ++. ..-. .++.+..+...++-+++.+.. +..+...++..++.+-..+|+.+. ..-+
T Consensus 70 ~~~~ll~~Ik~iL~~~~~~~~lD~~~-Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p 145 (500)
T 3vld_A 70 DVKPLLATIKRFLTSNVSYDSLNYDY-LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP 145 (500)
T ss_dssp CCHHHHHHHHHHHHCSSCCTTCCHHH-HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS
T ss_pred cHHHHHHHHHHHHcCCccccccCHHH-HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc
Confidence 3468999999999 43 211 1222 778888888888888665542 334555666668888899999887 2223
Q ss_pred hhhHH-hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH-----HhhHHHHHHHHhcCCchHHHHHHHHHhhHhH
Q 019679 102 KDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 175 (337)
Q Consensus 102 ~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 175 (337)
++... ..++..++++.-|++..+- ..++++..+.+....+.+ ...-+|.+...-+..+..+-...++.+..+.
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i~-~vvn~IE~~~~~LssdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVEND-KLITAIEKALERLSTDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCCH-HHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hhHhccChHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCchHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 33333 4688888888888765541 144455444444433332 2345566666655555555555555555554
Q ss_pred hhh
Q 019679 176 SQL 178 (337)
Q Consensus 176 ~~~ 178 (337)
...
T Consensus 225 ~~i 227 (500)
T 3vld_A 225 QFI 227 (500)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
No 168
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=46.77 E-value=1.3e+02 Score=25.40 Aligned_cols=207 Identities=11% Similarity=0.089 Sum_probs=119.0
Q ss_pred CCcHHHHHHHHHHHHhcCcc--cC----hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chh-hHHhhHHHH
Q 019679 80 DSSQHVRSALATVIMGMAPI--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID-LLSQSLLPA 151 (337)
Q Consensus 80 d~~~~vr~~a~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~llp~ 151 (337)
|++|---..+.+.+..+... +. +......++-.++.++..+|+.-|......+..+-..+ +.. .+.+.+-..
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 219 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45675455555555554321 22 12223456777888899999999999888887765443 332 233445455
Q ss_pred HHHHhcC-CchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchHH-HHHHHHHHHHHHHHhChHHHHhhH
Q 019679 152 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSI-RDAAANNVKRLAEEFGPDWAMQHI 226 (337)
Q Consensus 152 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~~~~~~~~~~~~~~l 226 (337)
+..++-+ ....--...++.++.+...+. ++.+..-+...++.+.+.....+ -.....++.++.+. ++. ....+
T Consensus 220 f~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~-L~~~v 297 (392)
T 2jak_A 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DST-LTEPV 297 (392)
T ss_dssp HHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-CGG-GHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-Cch-hHHHH
Confidence 5555533 222233456777777777764 33444445566666666544322 33444555555543 222 22334
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh---HHHHHHhhccCCChhHHHHHHHHH
Q 019679 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ---LLPVVINASKDRVPNIKFNVAKVL 288 (337)
Q Consensus 227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l 288 (337)
+..+...---.+..-....+.-+..+.+.++.+.+... ++..+.+++..++..|-.+|...+
T Consensus 298 i~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 298 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 44443333333444455677777787888887766544 555577788888888887776443
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.07 E-value=28 Score=29.78 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHH------HHhhhHhhHHh----cCCCcHHHHHHHHHHHHhcCcc
Q 019679 31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELA------IQHILPCVKEL----SSDSSQHVRSALATVIMGMAPI 99 (337)
Q Consensus 31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~~------~~~ll~~l~~l----~~d~~~~vr~~a~~~l~~l~~~ 99 (337)
+..++...+.+..+..+..+++++..+...-. ...+ ...++..+... ....+..+|.+++..+.+++-.
T Consensus 263 l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~ 342 (425)
T 3pst_A 263 IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL 342 (425)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH
Confidence 33344444445667788888888877755433 2211 11122221111 1223567888888888777653
Q ss_pred cChhhHHhhhHHHHHHhhc---------CCChhHHHHHHHhHHHhHh
Q 019679 100 LGKDATIEQLLPIFLSLLK---------DEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 100 ~~~~~~~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~~ 137 (337)
..+......+.+.+.+++. ..+++....++.++|.+..
T Consensus 343 ~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 343 VTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 3221111234444444443 2366777777777777763
No 170
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=45.50 E-value=20 Score=29.93 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHHH------HhhhHhhHHh---
Q 019679 8 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELAI------QHILPCVKEL--- 77 (337)
Q Consensus 8 R~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~------~~ll~~l~~l--- 77 (337)
|--+.+.+.-++...+.. ..+...+...+.+..+..+..+++++..+...-. ..... ..++..+...
T Consensus 180 ~FP~LDLLRl~v~~~~~~---~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~ 256 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS---SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQ 256 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSS
T ss_pred cchHHHHHHHHhcCCChH---HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhh
Confidence 344444444444332221 2233344444445667788888888887765433 22111 1122222111
Q ss_pred -cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc---------CCChhHHHHHHHhHHHhHh
Q 019679 78 -SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK---------DEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 78 -~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~~ 137 (337)
....+..+|.+++..+.+++-...++.....+.+.+.+++. ..+++....++.++|.+..
T Consensus 257 ~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 257 ASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 12235678888888887776533221111234444555444 2467777777777777764
No 171
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=43.36 E-value=1.7e+02 Score=25.58 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHHHHHHHHccc----------cchHHHHHHHHHHHHHHHHhChH-HHHh--hHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679 186 KLGALCMQWLKD----------KVYSIRDAAANNVKRLAEEFGPD-WAMQ--HIVPQVLEMINNPHYLYRMTILQAISLL 252 (337)
Q Consensus 186 ~l~~~l~~~l~d----------~~~~vr~~a~~~l~~~~~~~~~~-~~~~--~l~~~l~~~~~~~~~~vR~~~~~~l~~l 252 (337)
+++..+.++|+. .++.+-..|+.-+|.+.+..+.- .+.+ ..-..+++++.+++..||..|+.+++.+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 366666666652 36778888888899888876432 1111 2345667777777777887777777765
Q ss_pred c
Q 019679 253 A 253 (337)
Q Consensus 253 ~ 253 (337)
.
T Consensus 475 m 475 (480)
T 1ho8_A 475 I 475 (480)
T ss_dssp H
T ss_pred H
Confidence 3
No 172
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=36.19 E-value=3.5e+02 Score=27.25 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=72.5
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH-HHh
Q 019679 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI-TCS 263 (337)
Q Consensus 185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~-~~~ 263 (337)
+.++.+.-.++...++.|+.-+......+...++ ..+.+.++..+.....+.+...-.+|+..+..++....... ...
T Consensus 399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd-~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD-TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 3455555567788888999998888888888774 44566777777776655554444557777777765432211 111
Q ss_pred hHHHHHHhhccCCC-hhHHHHHHHHHHHHhhhhc---HHHHHHhhhHHHHhhhCCCCccH
Q 019679 264 QLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVD---QSVVEKSIRPCLVELSEDPDVDV 319 (337)
Q Consensus 264 ~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~---~~~~~~~i~~~l~~l~~d~~~~v 319 (337)
.++.-++..+.+-+ ..+|+ ....|..++-.-+ ...+.+.+.-.+.+.+..++.+.
T Consensus 478 ~~l~giLD~l~~l~~~QiRk-lf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~ 536 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRK-IFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKY 536 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHH-HHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHhhcCCCHHHHHH-HHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhh
Confidence 22333334444444 34554 3555555542111 11233444444455444444444
No 173
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=34.78 E-value=2.6e+02 Score=25.28 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=65.1
Q ss_pred HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh----------HHHHhhHHHHHHhhccCCChhHHHHHHHHHHH
Q 019679 221 WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----------EITCSQLLPVVINASKDRVPNIKFNVAKVLQS 290 (337)
Q Consensus 221 ~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 290 (337)
++.+.-++++..++++....+-..++..+..+...++. +.+....-.+..-+...++..+|..|.+.++.
T Consensus 313 ~if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~ 392 (596)
T 4f52_E 313 YLLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQL 392 (596)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 34445567788888888777777777777766443332 11222222222223467889999999999999
Q ss_pred HhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679 291 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 330 (337)
Q Consensus 291 i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l 330 (337)
+...++.+... .++..|.+ +...+.++..++..+..-
T Consensus 393 ~I~~~~~e~R~-~iL~~LL~--~~~~~~v~~~lI~~~Kde 429 (596)
T 4f52_E 393 YINKLDSQGKY-TLFRCLLN--TSNHSGVEAFIIQNIKNQ 429 (596)
T ss_dssp HHHHBCHHHHH-HHHHHHHH--HHCCHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHH-HHHHHHHh--cCCChHHHHHHHHHHHHH
Confidence 99888876433 33333322 224566666666665543
No 174
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=34.13 E-value=50 Score=16.85 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=18.3
Q ss_pred hhHHHHhhhCCCCccHHHHHHHHHH
Q 019679 304 IRPCLVELSEDPDVDVRFFATQALQ 328 (337)
Q Consensus 304 i~~~l~~l~~d~~~~vr~~a~~al~ 328 (337)
+...+..+..+.+++.|....++..
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5566677778888888887777653
No 175
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=32.59 E-value=1.2e+02 Score=20.76 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=57.4
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHh
Q 019679 187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCS 263 (337)
Q Consensus 187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~ 263 (337)
.+.-.+.-|+.+...+...+.-++... ...+.++..+.+.+...+...|...+..+..+.+..+. ..|..
T Consensus 9 ~l~~~L~~L~~s~~sI~~~s~w~l~h~-------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~ 81 (132)
T 4flb_A 9 SLDRKFQSVTNTMESIQGLSSWCIENK-------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRE 81 (132)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHTG-------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHH
Confidence 444445566766666666655555431 12345666777777767778889998888888765532 23433
Q ss_pred hH---HHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679 264 QL---LPVVINASKDRVPNIKFNVAKVLQSLIP 293 (337)
Q Consensus 264 ~l---~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 293 (337)
.+ +|..+....| +..|....+.+...-+
T Consensus 82 ~f~~~l~~~~~~~~~--~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 82 SFADVLPEAAALVKD--PSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHTTHHHHHHTTCS--TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence 33 3333333333 4667766666666643
No 176
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=31.25 E-value=1.4e+02 Score=21.04 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH------HHHh----hHHHHHHhhc
Q 019679 204 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE------ITCS----QLLPVVINAS 273 (337)
Q Consensus 204 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~------~~~~----~l~~~l~~~l 273 (337)
...+..|..++... ......++..+.+.+.......|..++..+..++...+.+ .|.+ .+.+.+...+
T Consensus 23 ~~~I~~LT~~a~~~--~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 23 KAKMTQITKAAIKA--IKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp HHHHHHHHHHHHHT--GGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHH
Confidence 33444555554432 1123456666666666566778888888888887665542 2333 3444444444
Q ss_pred cCCChhHHHHHHHHHHHHh--hhhcHH
Q 019679 274 KDRVPNIKFNVAKVLQSLI--PIVDQS 298 (337)
Q Consensus 274 ~d~~~~vr~~a~~~l~~i~--~~~~~~ 298 (337)
. ..+..|....+.+...- ..++++
T Consensus 101 ~-~~~~~r~kl~rLl~iW~~r~vF~~~ 126 (145)
T 3d9j_A 101 R-CPGDDKSKIVRVLNLWQKNNVFKSE 126 (145)
T ss_dssp S-SCGGGHHHHHHHHHHHHHTTSSCHH
T ss_pred h-CCHHHHHHHHHHHHHhcCCCCCCHH
Confidence 3 33888988888888885 445543
No 177
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=28.27 E-value=1.6e+02 Score=20.93 Aligned_cols=95 Identities=7% Similarity=0.088 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHH----HhhhH-hhHH
Q 019679 3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAI----QHILP-CVKE 76 (337)
Q Consensus 3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~----~~ll~-~l~~ 76 (337)
++|..=..+|+.+.. .+ ....+.+..+.+-+.. .++.+...|+..|..+.++++..... ..++. .+.+
T Consensus 32 ~Dw~~ileicD~In~-----~~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~k 105 (152)
T 3rru_A 32 EDWGQFMHICDIINT-----TQ-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVK 105 (152)
T ss_dssp CCHHHHHHHHHHHHH-----ST-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGG
T ss_pred ccHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHH
Confidence 566544444444332 11 2235677778877764 58888888999999999988876321 22343 3455
Q ss_pred hcCC---CcHHHHHHHHHHHHhcCcccChh
Q 019679 77 LSSD---SSQHVRSALATVIMGMAPILGKD 103 (337)
Q Consensus 77 l~~d---~~~~vr~~a~~~l~~l~~~~~~~ 103 (337)
++++ ....||.-+++.+...+..++.+
T Consensus 106 l~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 106 LLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp GGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 5543 23479999999998888777653
No 178
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=27.83 E-value=2.6e+02 Score=23.16 Aligned_cols=291 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679 4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 83 (337)
Q Consensus 4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~ 83 (337)
++..|....+.+..-...+..+..-+.++..+.+.. +++.|...+..+..-...+....+-..++..+.+..+ +
T Consensus 54 ~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~---~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~---~ 127 (369)
T 3k49_A 54 PASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFG---SKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYID---S 127 (369)
T ss_dssp CHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHC---CHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSC---H
T ss_pred CHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhC---CHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCC---H
Q ss_pred HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchH
Q 019679 84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 162 (337)
Q Consensus 84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~ 162 (337)
.-|...+..+..-...+-.+..-.+++..+++... +....+-......+..++.. +.--..+...+...+..
T Consensus 128 ~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~-------~~Gs~Vvq~~l~~~~~~ 200 (369)
T 3k49_A 128 NQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTH-------SYGCRVIQRLLEFGSSE 200 (369)
T ss_dssp HHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTS-------TTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC-------CccCcHHHHHHHhCCHH
Q ss_pred HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchH---HHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679 163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYS---IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 239 (337)
Q Consensus 163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 239 (337)
.|...+..+......+-.+.+...++..++....++... .+...+..+..-...+..+.+...++..++... +.
T Consensus 201 ~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~---~~ 277 (369)
T 3k49_A 201 DQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYG---SK 277 (369)
T ss_dssp HHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS---CH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhC---CH
Q ss_pred HHHHHHHHHH-------------HHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhh
Q 019679 240 LYRMTILQAI-------------SLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIR 305 (337)
Q Consensus 240 ~vR~~~~~~l-------------~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~ 305 (337)
..|...+..+ ..-...+-.+.+-++++-.++....++ -|...+..+......+... .+-..++
T Consensus 278 ~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~---~~~~l~~~i~p~l~~L~~~~~~G~~~~ 354 (369)
T 3k49_A 278 NQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGE---GKKLIVIAIRAYLDKLNKSNSLGNRHL 354 (369)
T ss_dssp HHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHCC--CCCCC
T ss_pred HHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHhccccCcchHH
Q ss_pred HHHHhhhC
Q 019679 306 PCLVELSE 313 (337)
Q Consensus 306 ~~l~~l~~ 313 (337)
..+.+++.
T Consensus 355 ~~~e~~~~ 362 (369)
T 3k49_A 355 ASVEKLAA 362 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 179
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.78 E-value=1e+02 Score=24.17 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=49.2
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhC-HHH-H-----HHhhhHhhHHhcCC----CcHHHHHHHHHHHHhcCcccChh
Q 019679 35 YVRLLRDNEAEVRIAAAGKVTKICRILN-PEL-A-----IQHILPCVKELSSD----SSQHVRSALATVIMGMAPILGKD 103 (337)
Q Consensus 35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~-~-----~~~ll~~l~~l~~d----~~~~vr~~a~~~l~~l~~~~~~~ 103 (337)
+...+.+.++..+..+++++..+..+-. ... + ...++..+.....| .+..+|.+++..+.+++-...++
T Consensus 95 l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~ 174 (253)
T 3gae_A 95 IEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG 174 (253)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhc
Confidence 3333444566777778877777765433 221 1 11122222111122 35677877777777766432211
Q ss_pred hHHhhhHHHHHHhhc---------CCChhHHHHHHHhHHHhHh
Q 019679 104 ATIEQLLPIFLSLLK---------DEFPDVRLNIISKLDQVNQ 137 (337)
Q Consensus 104 ~~~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~~ 137 (337)
....++...+.+++. .++++....++.++|.+..
T Consensus 175 ~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 175 NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 101122233333332 1255666666666666663
No 180
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=27.24 E-value=1.3e+02 Score=19.38 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=34.3
Q ss_pred CHHHHHHhhhHhhHHhcCCCcH--HHHHHHHHHHHhcCcc-cChhhHHhhhHHHHHHhhcCCC
Q 019679 62 NPELAIQHILPCVKELSSDSSQ--HVRSALATVIMGMAPI-LGKDATIEQLLPIFLSLLKDEF 121 (337)
Q Consensus 62 ~~~~~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~d~~ 121 (337)
..+...+.++.+|.+..+|.+. .+|+++-++...+..- .....-....+..+-+..+|++
T Consensus 11 e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPN 73 (94)
T 2qzg_A 11 SPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPN 73 (94)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred chHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCC
Confidence 3445556666677778888653 7888888887777541 1111112344445555555544
No 181
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=25.97 E-value=2.7e+02 Score=22.82 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=7.0
Q ss_pred hhHHHHHHhhcCCC
Q 019679 108 QLLPIFLSLLKDEF 121 (337)
Q Consensus 108 ~l~~~l~~~l~d~~ 121 (337)
++.+.+..++.|..
T Consensus 131 el~~~~~~L~~d~~ 144 (351)
T 3gvo_A 131 ELDGHVLKCVKDQN 144 (351)
T ss_dssp GGTTCHHHHHHSTT
T ss_pred HhhhhHHHHHHhhh
Confidence 34444555555544
No 182
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.26 E-value=4.8e+02 Score=23.54 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---------HhhHHHHHHH-hhcCcchHHHHHHHHHHHHh
Q 019679 183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---------MQHIVPQVLE-MINNPHYLYRMTILQAISLL 252 (337)
Q Consensus 183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---------~~~l~~~l~~-~~~~~~~~vR~~~~~~l~~l 252 (337)
..+.-++.+..+++++...+...++..+..+...++.... ...+...+.. +...++.+.|..+...++.+
T Consensus 314 if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~ 393 (596)
T 4f52_E 314 LLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLY 393 (596)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 3444566777888888888888888887777766543211 1112222222 33468889999999999998
Q ss_pred ccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679 253 APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292 (337)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 292 (337)
...+..+ -+-.++-.+++ ...++.++..++..+..-.
T Consensus 394 I~~~~~e-~R~~iL~~LL~--~~~~~~v~~~lI~~~KdeI 430 (596)
T 4f52_E 394 INKLDSQ-GKYTLFRCLLN--TSNHSGVEAFIIQNIKNQI 430 (596)
T ss_dssp HHHBCHH-HHHHHHHHHHH--HHCCHHHHHHHHHHHHHHH
T ss_pred HHhCChH-HHHHHHHHHHh--cCCChHHHHHHHHHHHHHH
Confidence 8877765 34455555555 4456788888877776443
Done!