BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019681
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/284 (71%), Positives = 224/284 (78%), Gaps = 6/284 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
SL+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 175 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 234
Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
+K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALGSFRS
Sbjct: 235 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/284 (71%), Positives = 224/284 (78%), Gaps = 6/284 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
SL+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 175 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 234
Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
+K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALGSFRS
Sbjct: 235 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/284 (70%), Positives = 223/284 (78%), Gaps = 6/284 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 20 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 79
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 80 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 133
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
L+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 134 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 193
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 194 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 253
Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
+K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALGSFRS
Sbjct: 254 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 297
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/284 (70%), Positives = 223/284 (78%), Gaps = 6/284 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
SL+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 138 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257
Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
+K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALG FRS
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/284 (70%), Positives = 222/284 (78%), Gaps = 6/284 (2%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
L+RA++YM+AQCLGAI GVGLVKAF K Y ++GGGAN +A GY+ G L AEIIGTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257
Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
+K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALG FRS
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 139/247 (56%), Gaps = 22/247 (8%)
Query: 79 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYK-----SQTDPAKNVDGCAGVGILGI 133
A E K F+RA++AEF+A +G+K +QT NV +
Sbjct: 2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---------V 52
Query: 134 AWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 193
+ AFG I L ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI ++
Sbjct: 53 SLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAIL 112
Query: 194 KAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVL 253
S T G N+LADG ++G GL EIIGT LV V + TD +R RD +
Sbjct: 113 SGITSS-LTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGS 167
Query: 254 APLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 313
APL IG +V + HL I TG GINPARS G+AVI + + + W+FWVGPFIG A+A
Sbjct: 168 APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAV 224
Query: 314 FYHQFIL 320
+ FIL
Sbjct: 225 LIYDFIL 231
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 137/243 (56%), Gaps = 12/243 (4%)
Query: 79 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAF 137
A E K F+RA++AEF+A +G+ P K+ V + ++ AF
Sbjct: 2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAF 58
Query: 138 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ 197
G I L ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI ++
Sbjct: 59 GLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118
Query: 198 KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 257
S G N LA G ++G GL EIIGT LV V + TD +R RD + PL
Sbjct: 119 SSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLA 173
Query: 258 IGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQ 317
IGF+V + HL I TG GINPARS G++VI + + D W+FWVGPFIGAA+A +
Sbjct: 174 IGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYD 230
Query: 318 FIL 320
FIL
Sbjct: 231 FIL 233
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 17/235 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 63
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 121
Query: 206 G-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 264
G G + + G GL E+I TF LV+T+F++ D KR+ V L IGF+V +
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAI 177
Query: 265 VHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319
HL I TG +NPARS G AVI W++ W++WVGP IGA +A ++++
Sbjct: 178 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 17/235 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 63
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 121
Query: 206 G-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 264
G G + + G GL E+I TF LV+T+F++ D KR+ V L IGF+V +
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAI 177
Query: 265 VHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319
HL I TG +NPARS G AVI W++ W++WVGP IGA +A ++++
Sbjct: 178 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 17/235 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 102
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ + + + G
Sbjct: 103 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVG 160
Query: 206 G-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 264
G G + + G GL E+I TF LV+T+F++ D KR+ V L IGF+V +
Sbjct: 161 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAI 216
Query: 265 VHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319
HL I TG +NPARS G AVI W++ W++WVGP IGA +A ++++
Sbjct: 217 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 268
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 124/234 (52%), Gaps = 15/234 (6%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + P V ++ I+ FG I +V
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMV 54
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ G
Sbjct: 55 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-G 113
Query: 206 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 265
G + + G GL E+I TF LV+T+F++ D KR+ + L IGF+V +
Sbjct: 114 LGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIG 169
Query: 266 HLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319
HL I TG +NPARS G AVI W++ W++WVGP IGA +A ++++
Sbjct: 170 HLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
EL SF+RA+ AEF A +G + P + +L +A AFG
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLA 51
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
+ LV ISG H+NPAVTF + ++SL+RA+ YMVAQ LGA++G ++ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPP- 110
Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 260
R N L G S G EI T V +F+ D +R+ R V L +GF
Sbjct: 111 AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 261 AVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 320
++ + HL + TG G+NPARS A++ + + + W++WVGP IGA + + + F+L
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
EL SF+RA+ AEF A +G + P + +L +A AFG
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLA 51
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
+ LV ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA++G ++ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP- 110
Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 260
R N L G S G EI T V +F+ D +R+ R V L +GF
Sbjct: 111 AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 261 AVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 320
++ + HL + TG G+NPARS A++ + + + W++WVGP IGA + + + F+L
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 124/241 (51%), Gaps = 20/241 (8%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
E+ +F +A+ AEF+A + + S IL IA AFG
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGLA 53
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
I L +SGGHINPA+T L + ++SL+RA Y+ AQ +GAI+G G++
Sbjct: 54 IGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-APL 112
Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIG 259
R N L + + G + E+I TF L +F++TD +R++ PV +P L IG
Sbjct: 113 NARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIG 167
Query: 260 FAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319
+V + HL I TG +NPARS G AV+ N+ W+FWVGP +GA +AA + ++
Sbjct: 168 LSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILYFYL 225
Query: 320 L 320
L
Sbjct: 226 L 226
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 19/235 (8%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
SF+RA+ AEF A +G + P + +L +A AFG + LV
Sbjct: 4 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLV 52
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA++G ++ + R
Sbjct: 53 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGN 111
Query: 206 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 265
N L G S G EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 112 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 167
Query: 266 HLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 320
HL + TG G+NPARS A++ + + + W++WVGP IGA + + + F+L
Sbjct: 168 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 19/235 (8%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
SF+RA+ AEF A +G + P + +L +A AFG + LV
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLV 50
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG 205
ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA++G ++ + R
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGN 109
Query: 206 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 265
N L G S G EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 110 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 165
Query: 266 HLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 320
HL + TG G+NPARS A++ + + + W++WVGP IGA + + + F+L
Sbjct: 166 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 33/203 (16%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV---SLVRAV------- 176
G+G G+A AFG + + Y GISGGH NPAV+ GL +A + SLV V
Sbjct: 61 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGA 120
Query: 177 ------MYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
+Y++A I + F + Y + G GYS L EII T
Sbjct: 121 IVAAAALYVIATGKAGID----LGGFASNGYGEHSPG------GYSLVSALLIEIILTAF 170
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
+ + +T + A AP+ IG A+ ++HL +IP+T T +NPARS G A ++
Sbjct: 171 FLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFV 223
Query: 291 KDKAWDDQWLFWVGPFIGAAIAA 313
A WLFW+ P +G A A
Sbjct: 224 GGWALQQLWLFWLAPIVGGAAGA 246
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 209 NELADGYSTGVGLAAEIIGTFVLVY-----TVFSATDPKRSARDSHVPVLAPLPIGFAVF 263
N Y G L AE GTF LV+ VF+A P+ + V L G V
Sbjct: 21 NLYFQSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGV----ALAFGLTVL 76
Query: 264 MVHLATIPITGTGINPARSLGAAV 287
+ A I+G NPA S+G V
Sbjct: 77 TMAYAVGGISGGHFNPAVSVGLTV 100
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 92
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 93 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 151
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A+ ++HL +IP+T T +NPARS A I+ A +
Sbjct: 152 ATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQ 204
Query: 298 QWLFW 302
W FW
Sbjct: 205 LWFFW 209
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A ++HL +IP+T T +NPARS A I+ A +
Sbjct: 155 ATDKFAPAG------FAPIAIGLACTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQ 207
Query: 298 QWLFW 302
W FW
Sbjct: 208 LWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A+ ++HL +IP+T T +NPARS A I+ A +
Sbjct: 155 ATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQ 207
Query: 298 QWLFW 302
W FW
Sbjct: 208 LWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A+ ++HL +IP+T +NPARS A I+ A +
Sbjct: 155 ATDKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARST-AVAIFQGGWALEQ 207
Query: 298 QWLFW 302
W FW
Sbjct: 208 LWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A+ ++HL +IP+T +NPARS A I+ A +
Sbjct: 155 ATDKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARST-AVAIFQGGWALEQ 207
Query: 298 QWLFW 302
W FW
Sbjct: 208 LWFFW 212
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 11/195 (5%)
Query: 118 PAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVM 177
P G ++ I++ FG + V V+ T +SGG++NPAVT L LAR + R ++
Sbjct: 73 PETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGIL 132
Query: 178 YMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 237
Q + ++ G A AN L G S GL E GT +L TV
Sbjct: 133 MAFTQIVAGMAAAGAASAMTPGEIAF----ANALGGGASRTRGLFLEAFGTAILCLTVLM 188
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
K A AP IG A+ + HL I TG G+NPARS G AV +
Sbjct: 189 LAVEKHRAT-----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFP--NY 241
Query: 298 QWLFWVGPFIGAAIA 312
W++W+GP +GA +A
Sbjct: 242 HWIYWLGPILGAFLA 256
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 198 KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-------SATDPKRSARDSHV 250
K Y R+G G++ + + + + ++ E +GTF+ +++ F A + +
Sbjct: 28 KPAYARWGFGSDSVRNHF---IAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQ 84
Query: 251 PVLAPLPIGFAVFMVHLATIPITGTGINPARSL 283
++ GF V + T ++G +NPA +L
Sbjct: 85 LIMISFGFGFGVMVGVFITYRVSGGNLNPAVTL 117
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A+ ++ L +IP+T +NPARS A I+ A +
Sbjct: 155 ATDKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARST-AVAIFQGGWALEQ 207
Query: 298 QWLFW 302
W FW
Sbjct: 208 LWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA 186
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 187 ISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFS 237
I L+ S T + A+ A GYS L E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 238 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297
ATD A AP+ IG A+ ++ L +IP+T +NPARS A I+ A +
Sbjct: 155 ATDKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARST-AVAIFQGGWALEQ 207
Query: 298 QWLFW 302
W FW
Sbjct: 208 LWFFW 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL 192
I AFG I +Y ISG HINPAVT GL+ +K V Y++AQ LGA G +
Sbjct: 58 IGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFI 117
Query: 193 VKAFQKSYYTRYGG-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVP 251
GG GA G S + AE++GTF+L+ T+ +R+ +
Sbjct: 118 FLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG---- 173
Query: 252 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGA---AVIYNKDKAWDDQWLFWVGPFIG 308
A + IG V + I+G+ +NPAR+ G +I+ W+ ++ +GP +G
Sbjct: 174 -FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVG 232
Query: 309 AAIAAFYHQFI 319
A +AA +Q++
Sbjct: 233 AVLAALTYQYL 243
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 41/222 (18%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL 192
I+ FG + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA L
Sbjct: 44 ISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAAL 103
Query: 193 VKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTV 235
V F+++++ G + +LA +ST A E++ T +L+ +
Sbjct: 104 VYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI 163
Query: 236 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAW 295
+ TD LAPL IG + ++ + P+TGT +NPAR G V AW
Sbjct: 164 LALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVF-----AW 215
Query: 296 DDQW------------LFWV---GPFIGAAIAAF-YHQFILR 321
W F V GP +GA + AF Y + I R
Sbjct: 216 LAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL 192
I AF I ++Y ISG HINPAVT L+ + V Y+VAQ +GA G L
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 193 VKAFQKSYYTRYGG-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVP 251
A GG GA G G + E IGTF+L+ + +R+ P
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----P 173
Query: 252 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKD-----KAWDDQWLFWVGPF 306
A L IG V + ITG+ +NPAR+ G Y D W ++ +GP
Sbjct: 174 GFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPI 230
Query: 307 IGAAIAAFYHQFILR 321
+GA AA+ + ++ +
Sbjct: 231 VGAVAAAWLYNYLAK 245
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 43/224 (19%)
Query: 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGV 190
+ + W G + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA
Sbjct: 44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAA 101
Query: 191 GLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVY 233
LV F+++++ G + +LA +ST A E++ T +L+
Sbjct: 102 ALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161
Query: 234 TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDK 293
+ + TD LAPL IG + ++ + P+TG +NPAR G V
Sbjct: 162 LILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF----- 213
Query: 294 AWDDQW------------LFWV---GPFIGAAIAAF-YHQFILR 321
AW W F V GP +GA + AF Y + I R
Sbjct: 214 AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
Query: 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGV 190
L + W G +F + +A +SG H+N AV+ GL K L + +Y AQ LGA G
Sbjct: 46 LCLGW--GLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
Query: 191 GLVKAFQKSYYTRYGGGANELADGYSTGVGLAA----EIIGTFVLVYTVFSATDPKRSAR 246
V + + + + L E+I T +L+ + D +
Sbjct: 104 STVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK 163
Query: 247 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI----YNKDKAWDDQWLFW 302
H+ L+ + +G + + + TG +NP+R LG+ + Y KD D + FW
Sbjct: 164 -FHILKLSSV-VGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFW 221
Query: 303 ---VGPFIGAAI-AAFYHQFI 319
V P +G+ + FY + I
Sbjct: 222 VPLVAPCVGSVVFCQFYDKVI 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,284,151
Number of Sequences: 62578
Number of extensions: 364384
Number of successful extensions: 1028
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 53
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)