Query 019681
Match_columns 337
No_of_seqs 225 out of 1650
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 2.7E-54 5.9E-59 398.4 20.0 233 80-331 3-236 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 8.4E-48 1.8E-52 366.7 23.4 223 83-322 49-274 (296)
3 PLN00026 aquaporin NIP; Provi 100.0 1.9E-47 4.2E-52 363.8 21.6 227 85-333 68-298 (298)
4 PF00230 MIP: Major intrinsic 100.0 2.3E-47 5E-52 351.1 20.2 227 81-316 1-227 (227)
5 PTZ00016 aquaglyceroporin; Pro 100.0 1.8E-46 4E-51 357.9 24.1 226 85-323 47-292 (294)
6 PRK05420 aquaporin Z; Provisio 100.0 3.6E-46 7.7E-51 345.2 22.9 221 88-323 2-230 (231)
7 PLN00166 aquaporin TIP2; Provi 100.0 9.2E-46 2E-50 345.8 24.0 230 79-322 9-238 (250)
8 PLN00167 aquaporin TIP5; Provi 100.0 9.4E-46 2E-50 346.7 23.4 233 79-326 13-245 (256)
9 COG0580 GlpF Glycerol uptake f 100.0 5.7E-46 1.2E-50 342.5 21.2 225 86-321 3-240 (241)
10 PLN00182 putative aquaporin NI 100.0 4.8E-45 1E-49 345.8 24.2 217 84-321 38-254 (283)
11 KOG0224 Aquaporin (major intri 100.0 3.8E-46 8.2E-51 347.9 15.1 228 84-323 28-277 (316)
12 PLN00027 aquaporin TIP; Provis 100.0 7.4E-45 1.6E-49 340.4 22.9 229 79-322 11-240 (252)
13 PLN00183 putative aquaporin NI 100.0 9.8E-43 2.1E-47 328.8 22.6 220 84-325 41-260 (274)
14 cd00333 MIP Major intrinsic pr 100.0 1E-41 2.2E-46 314.8 22.0 220 89-319 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 3E-40 6.6E-45 302.6 19.4 216 93-316 1-216 (216)
16 PLN00182 putative aquaporin NI 99.6 1.5E-14 3.3E-19 137.7 10.1 98 86-198 157-254 (283)
17 cd00333 MIP Major intrinsic pr 99.5 1.5E-14 3.2E-19 133.8 8.8 99 85-195 127-227 (228)
18 PLN00026 aquaporin NIP; Provi 99.5 2.2E-14 4.8E-19 137.2 9.6 109 212-322 65-173 (298)
19 PLN00183 putative aquaporin NI 99.5 5E-14 1.1E-18 133.6 9.9 99 87-200 160-258 (274)
20 PLN00184 aquaporin NIP1; Provi 99.5 9.3E-14 2E-18 133.1 9.8 107 214-322 50-156 (296)
21 TIGR00861 MIP MIP family chann 99.5 1.8E-13 3.9E-18 125.6 9.1 96 85-192 119-215 (216)
22 PLN00166 aquaporin TIP2; Provi 99.4 3E-13 6.4E-18 126.9 9.6 106 215-322 15-125 (250)
23 PLN00167 aquaporin TIP5; Provi 99.4 8.4E-13 1.8E-17 124.2 9.8 105 216-322 20-129 (256)
24 PLN00027 aquaporin TIP; Provis 99.4 2.4E-12 5.3E-17 120.9 9.5 104 217-322 19-127 (252)
25 PRK05420 aquaporin Z; Provisio 99.3 5.5E-12 1.2E-16 117.1 9.6 103 218-322 2-105 (231)
26 PTZ00016 aquaglyceroporin; Pro 99.3 6.7E-12 1.4E-16 120.4 9.2 104 217-322 49-152 (294)
27 KOG0223 Aquaporin (major intri 99.3 5.4E-12 1.2E-16 117.2 5.9 99 86-200 130-228 (238)
28 COG0580 GlpF Glycerol uptake f 99.0 1.2E-09 2.7E-14 101.5 9.1 107 217-325 4-113 (241)
29 KOG0224 Aquaporin (major intri 98.9 1.4E-09 3.1E-14 102.9 6.9 114 217-332 31-145 (316)
30 PF00230 MIP: Major intrinsic 98.9 3.3E-09 7.2E-14 97.6 7.4 94 86-192 133-226 (227)
31 COG2116 FocA Formate/nitrite f 94.1 2.5 5.5E-05 40.2 15.1 187 127-325 61-262 (265)
32 PRK10805 formate transporter; 90.4 14 0.0003 35.6 15.3 106 130-239 68-183 (285)
33 PRK11562 nitrite transporter N 86.4 31 0.00068 32.9 17.3 189 131-333 59-262 (268)
34 PRK09713 focB putative formate 81.5 52 0.0011 31.7 14.8 106 131-239 68-182 (282)
35 TIGR00790 fnt formate/nitrite 69.8 96 0.0021 28.9 14.1 107 130-238 43-158 (239)
36 PF01226 Form_Nir_trans: Forma 61.5 1.4E+02 0.0031 27.9 12.8 113 127-241 54-174 (250)
37 COG0730 Predicted permeases [G 55.1 1.7E+02 0.0038 26.9 12.3 30 167-196 68-97 (258)
38 KOG2422 Uncharacterized conser 53.8 4.4 9.5E-05 42.6 0.0 15 153-167 281-295 (665)
39 PF04632 FUSC: Fusaric acid re 49.1 3.4E+02 0.0074 28.5 16.5 141 141-325 352-495 (650)
40 PF08370 PDR_assoc: Plant PDR 44.5 36 0.00079 25.5 3.7 32 280-314 9-40 (65)
41 PF14034 Spore_YtrH: Sporulati 38.5 63 0.0014 26.4 4.5 29 171-199 73-101 (102)
42 PRK12446 undecaprenyldiphospho 38.1 11 0.00024 36.9 0.1 23 146-168 5-27 (352)
43 PF12811 BaxI_1: Bax inhibitor 34.7 4.2E+02 0.0092 25.5 10.4 51 142-196 101-163 (274)
44 PRK11427 multidrug efflux syst 32.5 6.9E+02 0.015 27.3 16.6 28 171-198 394-421 (683)
45 KOG3200 Uncharacterized conser 31.0 19 0.00042 32.4 0.5 26 4-29 29-54 (224)
46 PF03033 Glyco_transf_28: Glyc 29.1 13 0.00027 30.5 -1.0 21 149-169 5-25 (139)
47 PRK10621 hypothetical protein; 29.1 4.7E+02 0.01 24.3 12.3 29 168-196 73-101 (266)
48 PF01925 TauE: Sulfite exporte 28.2 4.4E+02 0.0095 23.6 11.2 27 169-195 60-86 (240)
49 PF13786 DUF4179: Domain of un 26.9 21 0.00046 27.6 0.0 6 19-24 8-13 (94)
50 PF14241 DUF4341: Domain of un 23.5 73 0.0016 23.4 2.3 56 252-312 6-61 (62)
51 PF08188 Protamine_3: Spermato 22.3 58 0.0013 22.1 1.4 17 12-28 8-24 (48)
52 PF09692 Arb1: Argonaute siRNA 21.6 23 0.00049 35.8 -0.9 13 11-23 2-14 (396)
53 KOG4217 Nuclear receptors of t 21.4 84 0.0018 32.6 3.0 22 15-37 317-338 (605)
54 TIGR00834 ae anion exchange pr 21.2 3.9E+02 0.0084 30.1 8.3 18 90-107 366-383 (900)
55 KOG3030 Lipid phosphate phosph 20.5 2.4E+02 0.0051 27.7 5.8 49 274-322 210-264 (317)
56 KOG0009 Ubiquitin-like/40S rib 20.3 36 0.00079 25.0 0.1 19 9-27 23-41 (62)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-54 Score=398.41 Aligned_cols=233 Identities=52% Similarity=0.820 Sum_probs=213.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchh
Q 019681 80 VELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 159 (337)
Q Consensus 80 ~e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPA 159 (337)
.|..+++++|++++||++|++|+|++|+++..+... +..++.+.+++++|+++++++|++++|||||+|||
T Consensus 3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPA 73 (238)
T KOG0223|consen 3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPA 73 (238)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHH
Confidence 455678999999999999999999999988866542 34567899999999999999999999999999999
Q ss_pred hhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHH-h
Q 019681 160 VTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-A 238 (337)
Q Consensus 160 VTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~-~ 238 (337)
||+++++.|++++.|+..|+++|++|+++|+++.+.+++.+++..+.+.+.+.++.+.+++++.|++.||+|+++++. +
T Consensus 74 VT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a 153 (238)
T KOG0223|consen 74 VTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATA 153 (238)
T ss_pred HHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEe
Confidence 999999999999999999999999999999999999999876666677788899999999999999999999999998 8
Q ss_pred ccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHH
Q 019681 239 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF 318 (337)
Q Consensus 239 ~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~ 318 (337)
+|+|++ .++|+.||+++.+.+++++++||++|||||+|||+++++ .|++|||||+||++|+++|+++|++
T Consensus 154 ~d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~ 223 (238)
T KOG0223|consen 154 TDPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRL 223 (238)
T ss_pred ecCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHH
Confidence 888876 479999999999999999999999999999999999987 4999999999999999999999999
Q ss_pred HcccchhhhccCc
Q 019681 319 ILRAGAVKALGSF 331 (337)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (337)
++.+++.+...+.
T Consensus 224 v~~~~~~~~~~~~ 236 (238)
T KOG0223|consen 224 VFIPDESEPTKSA 236 (238)
T ss_pred hccCccccccCcc
Confidence 9998855544433
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=8.4e-48 Score=366.67 Aligned_cols=223 Identities=27% Similarity=0.419 Sum_probs=187.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhH
Q 019681 83 TKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 162 (337)
Q Consensus 83 ~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTl 162 (337)
..++++|++++||+||++|+|++++++...... ....+++.+++++|+++++.+++++++||||+|||||+
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~---------~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTl 119 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN---------DNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTI 119 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---------CCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHH
Confidence 356789999999999999999999876532211 11235678899999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCC---ccccCCcccchhhHHHHHHHHHHHHHHHHHhc
Q 019681 163 GLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGG---ANELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (337)
Q Consensus 163 a~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~---~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~ 239 (337)
++++.++++|.++++|+++|++|+++|+++++.+++.......+. .....++.+..++|+.|+++||+|+++++.+.
T Consensus 120 a~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~ 199 (296)
T PLN00184 120 AFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVA 199 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999986543321111 11122335788999999999999999999876
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHHH
Q 019681 240 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319 (337)
Q Consensus 240 ~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~~ 319 (337)
++++.. ..+.|+.||++|.+.+++.+++||++|||||||||+++++ .|+++||||+||++|+++|+++|+++
T Consensus 200 ~~~~~~-----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilGa~laal~y~~l 271 (296)
T PLN00184 200 TDNRAI-----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLGAIAGAWVYNTV 271 (296)
T ss_pred ccCcCC-----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHHHHHHHHHHHHH
Confidence 654321 2478999999999999999999999999999999999975 68999999999999999999999999
Q ss_pred ccc
Q 019681 320 LRA 322 (337)
Q Consensus 320 ~~~ 322 (337)
+..
T Consensus 272 ~~~ 274 (296)
T PLN00184 272 RYT 274 (296)
T ss_pred hcC
Confidence 754
No 3
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=1.9e-47 Score=363.77 Aligned_cols=227 Identities=27% Similarity=0.412 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHH
Q 019681 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (337)
Q Consensus 85 ~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~ 164 (337)
++++|++++||+||++|+|+++++.+..... ....+.+.+++++|+++++.++++++|||||+|||||+++
T Consensus 68 ~~~~r~~laEfiGTflLvf~g~~~~~~~~~~---------~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~ 138 (298)
T PLN00026 68 VSLTRKLGAEFVGTFILIFAATAGPIVNQKY---------DGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAF 138 (298)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------CCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHH
Confidence 5678999999999999999998754421110 0113567788999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 019681 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244 (337)
Q Consensus 165 ~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~ 244 (337)
++.++++|.++++|+++|++|+++|+++++.++++... ++.+ .++.+..++++.|+++||+|+++++.+.+++++
T Consensus 139 al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~---~g~t--~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~ 213 (298)
T PLN00026 139 AALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMS---GGVT--VPSVSTGQAFALEFIITFNLLFVVTAVATDTRA 213 (298)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---Ccee--eecccHHHHHHHHHHHHHHHHHhheeeecCCCC
Confidence 99999999999999999999999999999999876321 2222 245688899999999999999999876444332
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHHHcccc-
Q 019681 245 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAG- 323 (337)
Q Consensus 245 ~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~~~~~~- 323 (337)
. ..+.|+.||++|.+.+++.+++||++|||||||||+++.+ .|+++|+||+||++|+++|+++|+++..++
T Consensus 214 ~-----~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~~~ 285 (298)
T PLN00026 214 V-----GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLREE 285 (298)
T ss_pred c-----CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 1 2357899999999999999999999999999999999864 799999999999999999999999996443
Q ss_pred ---hhhhccCccC
Q 019681 324 ---AVKALGSFRS 333 (337)
Q Consensus 324 ---~~~~~~~~~~ 333 (337)
..+...|||.
T Consensus 286 ~~~~~~~~~~~~~ 298 (298)
T PLN00026 286 DGDPPRPVRSFRR 298 (298)
T ss_pred cccChhhhhhccC
Confidence 2233456663
No 4
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=2.3e-47 Score=351.14 Aligned_cols=227 Identities=39% Similarity=0.609 Sum_probs=196.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhh
Q 019681 81 ELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAV 160 (337)
Q Consensus 81 e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAV 160 (337)
|+++++++|++++||+||++++|+++++.+......... +.....+.+.+++++|+++++++++++++||||+||||
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~---~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaV 77 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSS---GSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAV 77 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTT---STTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---cccccccHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 678899999999999999999999988655433222110 01123467889999999999999999999999999999
Q ss_pred hHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 019681 161 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATD 240 (337)
Q Consensus 161 Tla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~ 240 (337)
|++.++.|+++|.+++.|+++|++|+++|+.+++.++++.........+.+.++.+..++++.|+++|++|+++++...|
T Consensus 78 Tla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~ 157 (227)
T PF00230_consen 78 TLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVAD 157 (227)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhheeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999875555555667788889999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHH
Q 019681 241 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 316 (337)
Q Consensus 241 ~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~ 316 (337)
++++.+. ..+.|+.||+++.++.+..++.||++|||||+|||+++.+ .|+++|+||++|++|+++|+++|
T Consensus 158 ~~~~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 158 DKRKFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TTSSSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEehHHHHHHHHHhhC
Confidence 9887653 2378999999999999999999999999999999999976 39999999999999999999987
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.8e-46 Score=357.91 Aligned_cols=226 Identities=27% Similarity=0.386 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHH
Q 019681 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (337)
Q Consensus 85 ~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~ 164 (337)
++++|++++||+||++|+|++++++....... ...+.+.+++++|+++++.+++++++||||+|||||+++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---------~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~ 117 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---------NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGN 117 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---------CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHH
Confidence 67889999999999999999988765432110 123466789999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCC-------------ccccCCcccchhhHHHHHHHHHHH
Q 019681 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGG-------------ANELADGYSTGVGLAAEIIGTFVL 231 (337)
Q Consensus 165 ~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~-------------~~~~~~g~s~~~~f~~E~i~TfvL 231 (337)
++.++++|.++++|+++|++|+++|++++|.++++.+...+++ .....++.+..++|+.|+++||+|
T Consensus 118 ~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iL 197 (294)
T PTZ00016 118 AVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAIL 197 (294)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765443221 111234567789999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcC---CCCCCC----cceehhhh
Q 019681 232 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN---KDKAWD----DQWLFWVG 304 (337)
Q Consensus 232 v~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~---~~~~w~----~~wvywvg 304 (337)
+++++.++|+++... ....|+.||+++++++++.++.||++|||||||||+++.. ++..|. ++||||+|
T Consensus 198 v~~ila~~d~~~~~~----~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vg 273 (294)
T PTZ00016 198 LLVILAITDPNNCPA----FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVA 273 (294)
T ss_pred HHHHHHhccCccCCC----cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehH
Confidence 999999999876532 2357999999999999999999999999999999999962 223454 68999999
Q ss_pred HHHHHHHHHHHHHHHcccc
Q 019681 305 PFIGAAIAAFYHQFILRAG 323 (337)
Q Consensus 305 P~iGa~laa~~~~~~~~~~ 323 (337)
|++|+++|+++|++++++.
T Consensus 274 P~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 274 PFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998764
No 6
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=3.6e-46 Score=345.16 Aligned_cols=221 Identities=32% Similarity=0.592 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHh
Q 019681 88 YRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA 167 (337)
Q Consensus 88 ~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~ 167 (337)
+|++++||++|++|+|++++++....... ..+.+.+.+++++|+++++.+++++++||+|+|||||+++++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--------~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~ 73 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--------ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--------CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh
Confidence 68999999999999999988754321111 1234567789999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhh--hhcC------CCccccCCcccchhhHHHHHHHHHHHHHHHHHhc
Q 019681 168 RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYY--TRYG------GGANELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (337)
Q Consensus 168 g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~--~~~~------~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~ 239 (337)
|+++|.+++.|+++|++|+++|+++++.+++... ...+ +.....+.+.+..++++.|+++|++|+++++..+
T Consensus 74 ~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~ 153 (231)
T PRK05420 74 GRFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGAT 153 (231)
T ss_pred CCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998876421 1110 0001122345778999999999999999999998
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHHH
Q 019681 240 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319 (337)
Q Consensus 240 ~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~~ 319 (337)
|+++. ..+.|+.||+.+.+++++++++||++|||||||||+++.+ +..|+++|+||+||++|+++++++|+++
T Consensus 154 ~~~~~------~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l 226 (231)
T PRK05420 154 DKRAP------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLL 226 (231)
T ss_pred CCCCC------CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHH
Confidence 86542 2368999999999999999999999999999999999975 2345689999999999999999999999
Q ss_pred cccc
Q 019681 320 LRAG 323 (337)
Q Consensus 320 ~~~~ 323 (337)
++++
T Consensus 227 ~~~~ 230 (231)
T PRK05420 227 LEKD 230 (231)
T ss_pred hccC
Confidence 8765
No 7
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=9.2e-46 Score=345.82 Aligned_cols=230 Identities=33% Similarity=0.572 Sum_probs=191.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccch
Q 019681 79 AVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINP 158 (337)
Q Consensus 79 ~~e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNP 158 (337)
.+|...++.+|++++||++|++|+|+++++++........ +.....+.+.+++++|+.+++.+++++++||+|+||
T Consensus 9 ~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~----~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NP 84 (250)
T PLN00166 9 LGDSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSD----AALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNP 84 (250)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----ccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCH
Confidence 4455568889999999999999999999876642111110 111223567789999999999999999999999999
Q ss_pred hhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 019681 159 AVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA 238 (337)
Q Consensus 159 AVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~ 238 (337)
|+|+++++.++++|.++++|+++|++|+++|+.+++.++++.- .......++++..++++.|+++||+|+++++..
T Consensus 85 Avt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~ 160 (250)
T PLN00166 85 AVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGES----VPTHGVAAGLGAIEGVVMEIVVTFALVYTVYAT 160 (250)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CcccccCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998875421 112234456788999999999999999999987
Q ss_pred ccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHH
Q 019681 239 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF 318 (337)
Q Consensus 239 ~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~ 318 (337)
.+++++.. ...+.|+.||+.+.+.++.++++||++|||||+|||+++.+ .|+++|+||+||++|+++|+++|++
T Consensus 161 ~~~~~~~~---~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~ 234 (250)
T PLN00166 161 AADPKKGS---LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGD 234 (250)
T ss_pred cccccccc---cccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHH
Confidence 66554321 13478999999999999999999999999999999999965 5999999999999999999999998
Q ss_pred Hccc
Q 019681 319 ILRA 322 (337)
Q Consensus 319 ~~~~ 322 (337)
++.+
T Consensus 235 l~~~ 238 (250)
T PLN00166 235 VFIG 238 (250)
T ss_pred Hhcc
Confidence 8653
No 8
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=9.4e-46 Score=346.73 Aligned_cols=233 Identities=29% Similarity=0.452 Sum_probs=195.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccch
Q 019681 79 AVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINP 158 (337)
Q Consensus 79 ~~e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNP 158 (337)
.++...|+++|++++||++|++|+|++++++........ ++.....+++.+++++|+++++.+|+++++||+|+||
T Consensus 13 ~~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~----~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NP 88 (256)
T PLN00167 13 FQQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMP----DAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNP 88 (256)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc----cccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCH
Confidence 344556889999999999999999999887664321100 0112234578899999999999999999999999999
Q ss_pred hhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 019681 159 AVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA 238 (337)
Q Consensus 159 AVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~ 238 (337)
|||++.++.++++|.++++|+++|++|+++|+.+++.++++... +.+...++.+..++++.|+++|++|+++++..
T Consensus 89 Avtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~ 164 (256)
T PLN00167 89 AVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV----PTYKIAEEMTGFGASVLEGVLTFGLVYTVYAA 164 (256)
T ss_pred HHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc----cccccCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654211 12223445677889999999999999999998
Q ss_pred ccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHH
Q 019681 239 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF 318 (337)
Q Consensus 239 ~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~ 318 (337)
+|+++.. .+...|+.||+++.+++++++++||++|||||||||+++++ .|+++|+||+||++|+++++++|++
T Consensus 165 ~~~~~~~----~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~~ 237 (256)
T PLN00167 165 GDPRRGL----LGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYDN 237 (256)
T ss_pred ccccccC----CCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHHH
Confidence 8876532 13478999999999999999999999999999999999965 5899999999999999999999999
Q ss_pred Hcccchhh
Q 019681 319 ILRAGAVK 326 (337)
Q Consensus 319 ~~~~~~~~ 326 (337)
++.|+..+
T Consensus 238 l~~~~~~~ 245 (256)
T PLN00167 238 VVFPTQDD 245 (256)
T ss_pred HhCCCcCC
Confidence 99877654
No 9
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-46 Score=342.49 Aligned_cols=225 Identities=35% Similarity=0.555 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHH
Q 019681 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (337)
Q Consensus 86 sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~ 165 (337)
++.|++++||+||+++++.+++++.+....... ..+.+++++++++|+.+.+.+|+++++||+|+|||||++++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~------~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la 76 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSK------ALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALA 76 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhcccc------ccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHH
Confidence 457788999999999999999988776544321 35667888999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCC------Ccc-ccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 019681 166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG------GAN-ELADGYSTGVGLAAEIIGTFVLVYTVFSA 238 (337)
Q Consensus 166 l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~------~~~-~~~~g~s~~~~f~~E~i~TfvLv~~vl~~ 238 (337)
+.|+++|.+++.|+++|++||++|+.+++.++.+++....+ +.. +.+..++..++|+.|+++||+|+++++.+
T Consensus 77 ~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~ 156 (241)
T COG0580 77 VRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILAL 156 (241)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987766542 111 22334677899999999999999999998
Q ss_pred ccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHc---CC---CCCCCcceehhhhHHHHHHHH
Q 019681 239 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY---NK---DKAWDDQWLFWVGPFIGAAIA 312 (337)
Q Consensus 239 ~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~---~~---~~~w~~~wvywvgP~iGa~la 312 (337)
+|+++. + ..++|+.||+.+.+++++.++.||.++|||||+||++.+ +. +.++.|.|+||+||++|+++|
T Consensus 157 ~~~~~~--~---~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg 231 (241)
T COG0580 157 TDDGNA--N---AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILG 231 (241)
T ss_pred hccCcc--c---ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHH
Confidence 875544 2 238999999999999999999999999999999999953 21 112368999999999999999
Q ss_pred HHHHHHHcc
Q 019681 313 AFYHQFILR 321 (337)
Q Consensus 313 a~~~~~~~~ 321 (337)
+++|+.++.
T Consensus 232 ~~~~~~~~~ 240 (241)
T COG0580 232 ALLYKLLLG 240 (241)
T ss_pred HHHHHHHcc
Confidence 999998764
No 10
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=4.8e-45 Score=345.78 Aligned_cols=217 Identities=27% Similarity=0.457 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHH
Q 019681 84 KWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 163 (337)
Q Consensus 84 ~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla 163 (337)
.++++|++++||+||++|+|++++++...... . ...+.+.+++++|+++++.+++++++||||+|||||++
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~-~--------~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla 108 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLY-G--------GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVT 108 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-C--------CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHH
Confidence 36889999999999999999999876632211 0 12356778999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHhccCCC
Q 019681 164 LFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKR 243 (337)
Q Consensus 164 ~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~ 243 (337)
+++.++++|.++++|+++|++|+++|+++++.+++.... +.....++.+.+++++.|+++|++|+++++.+.++++
T Consensus 109 ~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~----~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~ 184 (283)
T PLN00182 109 FAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPE----AFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSR 184 (283)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----ceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccc
Confidence 999999999999999999999999999999998853211 1222234567889999999999999999997655443
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHHHcc
Q 019681 244 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILR 321 (337)
Q Consensus 244 ~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~~~~ 321 (337)
.. ..+.|+.+|+++++.+++.+++||++|||||+|||+++.+ .|.++|+||+||++|+++|+++|++++.
T Consensus 185 ~~-----~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 185 AV-----GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred cC-----CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 2357999999999999999999999999999999999854 6999999999999999999999999984
No 11
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-46 Score=347.95 Aligned_cols=228 Identities=28% Similarity=0.464 Sum_probs=199.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHH
Q 019681 84 KWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 163 (337)
Q Consensus 84 ~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla 163 (337)
+..+.|++++||+||+++++++++++.+...... .+.+.+++.+++|+.+++.+|+.++|||||+|||||++
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--------~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a 99 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--------TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLA 99 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--------CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHH
Confidence 5679999999999999999999999886654422 23456778888888899999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccc--------------cCCcccchhhHHHHHHHHH
Q 019681 164 LFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANE--------------LADGYSTGVGLAAEIIGTF 229 (337)
Q Consensus 164 ~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~--------------~~~g~s~~~~f~~E~i~Tf 229 (337)
+++.||++|.+.++|+++|++||++|++.+|..|.+.++.+.++..+ +.+..+..++|+.|+++|.
T Consensus 100 ~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa 179 (316)
T KOG0224|consen 100 MCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTA 179 (316)
T ss_pred HHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888776332 3456788999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHH-----cCCCCCC---Ccceeh
Q 019681 230 VLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI-----YNKDKAW---DDQWLF 301 (337)
Q Consensus 230 vLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~-----~~~~~~w---~~~wvy 301 (337)
+|+.+++.++|+++... ..+.|+.+|+.+.++..+.+.+||..||||||||||++ |+.+..+ .+.|++
T Consensus 180 ~L~~~l~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvP 255 (316)
T KOG0224|consen 180 MLVLCLFAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVP 255 (316)
T ss_pred HHHhheeEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeee
Confidence 99999999999887322 46889999999999999999999999999999999998 3322233 467899
Q ss_pred hhhHHHHHHHHHHHHHHHcccc
Q 019681 302 WVGPFIGAAIAAFYHQFILRAG 323 (337)
Q Consensus 302 wvgP~iGa~laa~~~~~~~~~~ 323 (337)
|++|++|+++++++|.+++.-+
T Consensus 256 ivgPl~Gai~G~~iY~~~Ig~h 277 (316)
T KOG0224|consen 256 IVGPLIGAILGGWIYDFFIGFH 277 (316)
T ss_pred ehhhhhhhhhhhhhheeeeecc
Confidence 9999999999999999997544
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=7.4e-45 Score=340.35 Aligned_cols=229 Identities=35% Similarity=0.603 Sum_probs=189.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccch
Q 019681 79 AVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINP 158 (337)
Q Consensus 79 ~~e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNP 158 (337)
.+|...+.++|++++||++|++|+|+++++++......+. ......+.+.+++++|+++++.+++++++||+|+||
T Consensus 11 ~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~----~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NP 86 (252)
T PLN00027 11 PGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDN----GSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNP 86 (252)
T ss_pred hHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC----CCCCCcchHHHHHHHHHHHHHHHHHHcccCccccCh
Confidence 3444456789999999999999999999876532211110 011234567799999999999999999999999999
Q ss_pred hhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 019681 159 AVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA 238 (337)
Q Consensus 159 AVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~ 238 (337)
|+|+++++.|+++|.++++|+++|++|+++|+.+++...++.. .+.....++.+..++++.|+++||+|+++++..
T Consensus 87 Avtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~ 162 (252)
T PLN00027 87 AVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYAT 162 (252)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987764321 122334467788999999999999999999976
Q ss_pred c-cCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHH
Q 019681 239 T-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQ 317 (337)
Q Consensus 239 ~-~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~ 317 (337)
. |+++.. ...+.|+.||+.+..++++.+++||++|||||||||+++.+ .|+++|+||+||++|+++|+++|+
T Consensus 163 ~~~~~~~~----~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~ 235 (252)
T PLN00027 163 AVDPKKGD----LGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYE 235 (252)
T ss_pred ccccccCC----ccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHH
Confidence 5 444321 13478999999999999999999999999999999999965 599999999999999999999999
Q ss_pred HHccc
Q 019681 318 FILRA 322 (337)
Q Consensus 318 ~~~~~ 322 (337)
+++.+
T Consensus 236 ~l~~~ 240 (252)
T PLN00027 236 LIFIG 240 (252)
T ss_pred HHhcC
Confidence 99864
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=9.8e-43 Score=328.85 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=185.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHH
Q 019681 84 KWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 163 (337)
Q Consensus 84 ~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla 163 (337)
..+.+|++++||++|++|+|++++.+...... ....+++.+++++|+++++.+++++++||+|+|||||++
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~---------~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla 111 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLS---------GGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIA 111 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHH
Confidence 34667999999999999999998876532211 122456778999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHhccCCC
Q 019681 164 LFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKR 243 (337)
Q Consensus 164 ~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~ 243 (337)
+++.++++|.++++|+++|++|+++|+.+++.+++... +.....+..+..++++.|+++|++|++.++...++++
T Consensus 112 ~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~ 186 (274)
T PLN00183 112 FATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQ 186 (274)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccccCCCcccHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 99999999999999999999999999999998887421 1111223445678999999999999999998887654
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHHHcccc
Q 019681 244 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAG 323 (337)
Q Consensus 244 ~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~~~~~~ 323 (337)
+. ..+.|+.+|+++.+.+++.+++||++|||||+|+|++.. ..|+++|+||+||++|+++|+++|++++.+.
T Consensus 187 ~~-----~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~~~~~wvy~vapilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 187 SL-----GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WDFKDIWIYITAPTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred CC-----CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CChhheehHHHHHHHHHHHHHHHHHHHhccC
Confidence 32 235799999999999999999999999999999999985 3699999999999999999999999998766
Q ss_pred hh
Q 019681 324 AV 325 (337)
Q Consensus 324 ~~ 325 (337)
..
T Consensus 259 ~~ 260 (274)
T PLN00183 259 QP 260 (274)
T ss_pred CC
Confidence 43
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=1e-41 Score=314.79 Aligned_cols=220 Identities=42% Similarity=0.704 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhc
Q 019681 89 RALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 168 (337)
Q Consensus 89 r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g 168 (337)
|++++||++|++|++++++++.......+ ...+.+.+++++|+.+.+.+++++++||+|+|||+|+++++.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--------~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~ 72 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--------ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGG 72 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--------CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhC
Confidence 56889999999999999987764332110 1234567899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCc--------cccCCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 019681 169 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA--------NELADGYSTGVGLAAEIIGTFVLVYTVFSATD 240 (337)
Q Consensus 169 ~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~--------~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~ 240 (337)
+++|.++++|+++|++|+++|+.+++.++++.++....+. +.+.++++..++++.|+++|++|+++++...+
T Consensus 73 ~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~ 152 (228)
T cd00333 73 RFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTD 152 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999988766543322 23456678899999999999999999998887
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHHH
Q 019681 241 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 319 (337)
Q Consensus 241 ~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~~ 319 (337)
+++.... ..+.|+.+|+++.+.++.++++||+++||||+++++++.+....|+++|+||++|++|+++|+++|+++
T Consensus 153 ~~~~~~~---~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 153 DPNGPPP---GGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred ccccCCC---CCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 6553211 346899999999999999999999999999999999996532369999999999999999999999864
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=3e-40 Score=302.58 Aligned_cols=216 Identities=41% Similarity=0.725 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhcCCch
Q 019681 93 AEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL 172 (337)
Q Consensus 93 aEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g~~s~ 172 (337)
+||++|++++|++++++.....+... ......+.+.+++++|+.+++.+++++++||+|+|||||+++++.++++|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~ 76 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAY----GAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPL 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccccc----CCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCH
Confidence 59999999999999887653322110 00111256778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 019681 173 VRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV 252 (337)
Q Consensus 173 ~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~ 252 (337)
.++++|+++|++|+++|+.+++.++++.+...........++.+..++++.|+++|++|+++++...+++++... ..
T Consensus 77 ~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~ 153 (216)
T TIGR00861 77 KRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GG 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---Cc
Confidence 999999999999999999999998886542111112223456788999999999999999999988876543221 23
Q ss_pred chhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHH
Q 019681 253 LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 316 (337)
Q Consensus 253 l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~ 316 (337)
+.|+.+|+++.+.++.++++||+++||||+|+++++.+ ...|+++|+||++|++|+++++++|
T Consensus 154 ~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~-~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 154 FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG-LAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc-cccccceeHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999864 3479999999999999999999875
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.55 E-value=1.5e-14 Score=137.65 Aligned_cols=98 Identities=24% Similarity=0.313 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHH
Q 019681 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (337)
Q Consensus 86 sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~ 165 (337)
+..+++++||++|++|++++++.....+ . .. . ..++++|+++++.+++++++||+|+|||+|++.+
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~-~---------~~---~-~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpa 222 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSR-A---------VG---E-LAGIAVGMTIILNVFVAGPISGASMNPARSLGPA 222 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccc-c---------CC---c-chhHHHHHHHHHHHHHccccCccccChHHHHHHH
Confidence 4578999999999999999886543211 1 01 1 1578899999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 019681 166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK 198 (337)
Q Consensus 166 l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~ 198 (337)
+.++ .|.+.|+|+++|++|+++|+++.+.+..
T Consensus 223 l~~~-~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 223 IVMG-RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred HHhc-cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 9865 5889999999999999999999888763
No 17
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.54 E-value=1.5e-14 Score=133.79 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHH
Q 019681 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (337)
Q Consensus 85 ~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~ 164 (337)
++.++.+++||++|++++++++......+.+ ......++++|+++.+++++++++||+|+|||+|++.
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~------------~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~ 194 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNGP------------PPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGP 194 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccccccC------------CCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHH
Confidence 5678999999999999999998765321110 0112368889999999999999999999999999999
Q ss_pred HHhcCC--chhHHHHHHHHHhHHHHHHHHHHHH
Q 019681 165 FLARKV--SLVRAVMYMVAQCLGAISGVGLVKA 195 (337)
Q Consensus 165 ~l~g~~--s~~~a~~Yi~AQ~lGai~ga~lv~~ 195 (337)
.+.++. +|.+.|+|+++|++|+++|+++.+.
T Consensus 195 ~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 195 ALFTGLARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred HHHhccccccceeehhhhHHHHHHHHHHHHHHh
Confidence 999998 7999999999999999999987653
No 18
>PLN00026 aquaporin NIP; Provisional
Probab=99.54 E-value=2.2e-14 Score=137.24 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=86.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCC
Q 019681 212 ADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNK 291 (337)
Q Consensus 212 ~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~ 291 (337)
.++.+..+.+++|+++||+|+++++.....+.+..........++.+|+++.+.+++++++||+.|||||++++++..
T Consensus 65 ~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g-- 142 (298)
T PLN00026 65 PPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALR-- 142 (298)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhC--
Confidence 345667789999999999999999853221111111100222468999999999999999999999999999999973
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHHccc
Q 019681 292 DKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 292 ~~~w~~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
+..|.+.|+||++|++|+++|+++++.++.+
T Consensus 143 ~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 143 HFPWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5679999999999999999999999998865
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.51 E-value=5e-14 Score=133.62 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHH
Q 019681 87 FYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 166 (337)
Q Consensus 87 l~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l 166 (337)
.++.+++||++|+++++++++.....+. . .. ..++.+|+.+++.+++++++||+|+|||+|++.++
T Consensus 160 ~~~~~~~E~v~T~iLv~~i~~~~~~~~~--~--------~~----~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai 225 (274)
T PLN00183 160 CSSAFWVEFIATFIVMFLAASLTSQPQS--L--------GH----LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAI 225 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeccccC--C--------CC----ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHH
Confidence 4688999999999999998766442211 0 11 14677888899999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 019681 167 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200 (337)
Q Consensus 167 ~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~ 200 (337)
.+ .+|.+.|+|+++|++|+++|+++.+.++.+.
T Consensus 226 ~~-~~~~~~wvy~vapilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 226 VS-WDFKDIWIYITAPTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred hC-CChhheehHHHHHHHHHHHHHHHHHHHhccC
Confidence 87 5899999999999999999999999987654
No 20
>PLN00184 aquaporin NIP1; Provisional
Probab=99.49 E-value=9.3e-14 Score=133.08 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=83.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCC
Q 019681 214 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDK 293 (337)
Q Consensus 214 g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~ 293 (337)
+.+..+.+++|+++||+|+++.+..................++.+|++|.+.+++++++||+.+|||+++++++. ++.
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~--g~~ 127 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASC--GRF 127 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHh--CCC
Confidence 345568899999999999999986543221111110011235566999999999999999999999999999996 346
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHHccc
Q 019681 294 AWDDQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 294 ~w~~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
.|.+.|+||++|++|+++|+++++.++..
T Consensus 128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 128 PLKQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999888854
No 21
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.46 E-value=1.8e-13 Score=125.56 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHH
Q 019681 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (337)
Q Consensus 85 ~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~ 164 (337)
.+.++.++.|+++|++++++.+.+....+... . ....++.+|+.++..+++++.+||+|+|||+|++.
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~---------~---~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~ 186 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDPRNRVP---------R---GGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGP 186 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecCCCCCC---------C---CccHHHHHHHHHHHHHHhCCCCcccccCchhhhhH
Confidence 36689999999999999999887654311110 0 01378899999999999999999999999999999
Q ss_pred HHhc-CCchhHHHHHHHHHhHHHHHHHHH
Q 019681 165 FLAR-KVSLVRAVMYMVAQCLGAISGVGL 192 (337)
Q Consensus 165 ~l~g-~~s~~~a~~Yi~AQ~lGai~ga~l 192 (337)
.+.+ +.+|.+.|+|+++|++|+++++.+
T Consensus 187 ~l~~~~~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 187 ALFAGLAGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred HHHhccccccceeHHHHHHHHHHHHHHHh
Confidence 9986 578999999999999999999875
No 22
>PLN00166 aquaporin TIP2; Provisional
Probab=99.45 E-value=3e-13 Score=126.91 Aligned_cols=106 Identities=22% Similarity=0.357 Sum_probs=86.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccC--CCC---CCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHc
Q 019681 215 YSTGVGLAAEIIGTFVLVYTVFSATDP--KRS---ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY 289 (337)
Q Consensus 215 ~s~~~~f~~E~i~TfvLv~~vl~~~~~--k~~---~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~ 289 (337)
.+..+.++.|+++||+|+++.+..... +.. ..+.......++.+|+++++.+++++++||+++||||++++++.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~- 93 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG- 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh-
Confidence 456688999999999999999876433 111 11111123468889999999999999999999999999999996
Q ss_pred CCCCCCCcceehhhhHHHHHHHHHHHHHHHccc
Q 019681 290 NKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 290 ~~~~~w~~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 94 -g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 -GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34579999999999999999999999988754
No 23
>PLN00167 aquaporin TIP5; Provisional
Probab=99.41 E-value=8.4e-13 Score=124.24 Aligned_cols=105 Identities=18% Similarity=0.335 Sum_probs=86.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCC--CCC---CCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcC
Q 019681 216 STGVGLAAEIIGTFVLVYTVFSATDPKRS--ARD---SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290 (337)
Q Consensus 216 s~~~~f~~E~i~TfvLv~~vl~~~~~k~~--~~~---~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~ 290 (337)
+..+.+++|+++||+|++..+.....++. .++ .......++.+|+++.+.+++++++||+.+|||+++++.+.
T Consensus 20 ~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~-- 97 (256)
T PLN00167 20 NALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG-- 97 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh--
Confidence 45678999999999999999876553321 111 11134679999999999999999999999999999999996
Q ss_pred CCCCCCcceehhhhHHHHHHHHHHHHHHHccc
Q 019681 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 291 ~~~~w~~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35679999999999999999999988887643
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.36 E-value=2.4e-12 Score=120.91 Aligned_cols=104 Identities=23% Similarity=0.331 Sum_probs=82.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhc--cCCC--CCCC-CCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCC
Q 019681 217 TGVGLAAEIIGTFVLVYTVFSAT--DPKR--SARD-SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNK 291 (337)
Q Consensus 217 ~~~~f~~E~i~TfvLv~~vl~~~--~~k~--~~~~-~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~ 291 (337)
..+.+++|+++||+|+++.+... +++. +.+. .......++.+|+++.+.+++.+++||+++|||+++++.+. +
T Consensus 19 ~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~--g 96 (252)
T PLN00027 19 ALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG--G 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh--C
Confidence 45789999999999999988542 1111 1110 11122579999999999999999999999999999999974 3
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHHccc
Q 019681 292 DKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 292 ~~~w~~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
+..|...|+||++|++|+++|++++++++..
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5679999999999999999999999877643
No 25
>PRK05420 aquaporin Z; Provisional
Probab=99.32 E-value=5.5e-12 Score=117.07 Aligned_cols=103 Identities=23% Similarity=0.175 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccC-CCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCC
Q 019681 218 GVGLAAEIIGTFVLVYTVFSATDP-KRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWD 296 (337)
Q Consensus 218 ~~~f~~E~i~TfvLv~~vl~~~~~-k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~ 296 (337)
.+.+++|+++|++|++........ +...++.......++.+|+++.+.+++++++||+.+|||+++++.+. ++..|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~--~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG--GRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh--CCCCHH
Confidence 367899999999999987753211 11111110012348999999999999999999999999999999997 456899
Q ss_pred cceehhhhHHHHHHHHHHHHHHHccc
Q 019681 297 DQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 297 ~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
+.|+||++|++|+++|+.+...++..
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999776666643
No 26
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.30 E-value=6.7e-12 Score=120.37 Aligned_cols=104 Identities=23% Similarity=0.306 Sum_probs=83.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCC
Q 019681 217 TGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWD 296 (337)
Q Consensus 217 ~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~ 296 (337)
..+.+++|+++||+|++..+...........+......++.+|+++++.+++++++||+.+|||+++++++. ++..|.
T Consensus 49 ~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~--g~i~~~ 126 (294)
T PTZ00016 49 NVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVF--GKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHh--ccCCHH
Confidence 347899999999999998886543321111010022467889999999999999999999999999999987 346899
Q ss_pred cceehhhhHHHHHHHHHHHHHHHccc
Q 019681 297 DQWLFWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 297 ~~wvywvgP~iGa~laa~~~~~~~~~ 322 (337)
..|+||++|++|+++|+.+-..++.+
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999887777655
No 27
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.26 E-value=5.4e-12 Score=117.25 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHH
Q 019681 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (337)
Q Consensus 86 sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~ 165 (337)
+-.+.++.|++.||.++|..+++....++. ...++++|+++.+.+.+.+++||+++|||+||+.+
T Consensus 130 ~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---------------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpA 194 (238)
T KOG0223|consen 130 STGQGLVIEIILTFILVFTVFATATDPRRS---------------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPA 194 (238)
T ss_pred CcchhHHHHHHHHHHHhheeEEEeecCCCc---------------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHH
Confidence 457899999999999999988765543332 22788899999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 019681 166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200 (337)
Q Consensus 166 l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~ 200 (337)
+..+. |...|+||++|++|+++++++.+.++.+.
T Consensus 195 vv~~~-w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 195 VVYGS-WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred HHhcC-CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99884 99999999999999999999998887765
No 28
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.2e-09 Score=101.49 Aligned_cols=107 Identities=23% Similarity=0.242 Sum_probs=81.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHh---ccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCC
Q 019681 217 TGVGLAAEIIGTFVLVYTVFSA---TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDK 293 (337)
Q Consensus 217 ~~~~f~~E~i~TfvLv~~vl~~---~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~ 293 (337)
..+-+++|+++|++|++....+ ..-+.......-.....+..|+.|.+.+++.+++||+.+|||.+++.++.. .-
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g--~f 81 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRG--RF 81 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhC--CC
Confidence 3456799999999999965421 111111011111233688999999999999999999999999999999973 56
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHHcccchh
Q 019681 294 AWDDQWLFWVGPFIGAAIAAFYHQFILRAGAV 325 (337)
Q Consensus 294 ~w~~~wvywvgP~iGa~laa~~~~~~~~~~~~ 325 (337)
.|.+...||++|++|+++|+.+-..+++++..
T Consensus 82 p~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~ 113 (241)
T COG0580 82 PWRKVLPYIVAQVLGAFAGAALLYLLYYGKIL 113 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 89999999999999999999877777766533
No 29
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.4e-09 Score=102.88 Aligned_cols=114 Identities=25% Similarity=0.248 Sum_probs=84.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-CCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCC
Q 019681 217 TGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHV-PVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAW 295 (337)
Q Consensus 217 ~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~-~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w 295 (337)
..+.+++|+++|++|++.-.++.-+..-.+..+. -.-..+..|+++.+.++..+.+||+.+|||.+++..++. .-.|
T Consensus 31 l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g--~~p~ 108 (316)
T KOG0224|consen 31 LLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG--RLPW 108 (316)
T ss_pred HHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc--CCCh
Confidence 4578999999999999866644332211111110 123478899999999999999999999999999998873 5789
Q ss_pred CcceehhhhHHHHHHHHHHHHHHHcccchhhhccCcc
Q 019681 296 DDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFR 332 (337)
Q Consensus 296 ~~~wvywvgP~iGa~laa~~~~~~~~~~~~~~~~~~~ 332 (337)
....+|.+++++||.+|+..--.+|.+...+..|..|
T Consensus 109 ~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~ 145 (316)
T KOG0224|consen 109 KKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNR 145 (316)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence 9999999999999999987666666555444444333
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=98.89 E-value=3.3e-09 Score=97.61 Aligned_cols=94 Identities=26% Similarity=0.303 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHH
Q 019681 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (337)
Q Consensus 86 sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~ 165 (337)
+..+.+..|+++|++++++........+.. ..+. ..++.+|..+.++.+..+..||+.+|||++++..
T Consensus 133 s~~~~~~~E~~~t~il~~~i~~~~~~~~~~-----------~~~~-~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~ 200 (227)
T PF00230_consen 133 SLGQAFFSEFIGTFILVLVILAVADDKRKF-----------PLGP-LAPLAIGLTVGALVLAGGPYTGASLNPARALGPA 200 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSTTSSS-----------TSSG-GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHHHhhhhhhccccccc-----------cccc-ccceeEEEEEeecccccccccccccCchhhcCce
Confidence 568999999999999999877653322111 1111 2578888888888999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhHHHHHHHHH
Q 019681 166 LARKVSLVRAVMYMVAQCLGAISGVGL 192 (337)
Q Consensus 166 l~g~~s~~~a~~Yi~AQ~lGai~ga~l 192 (337)
+.... |...|+|++++++|+++++.+
T Consensus 201 l~~~~-~~~~wvy~~~P~~Ga~~a~~~ 226 (227)
T PF00230_consen 201 LFSGI-WDYFWVYWVGPFIGAILAALL 226 (227)
T ss_dssp HHHTH-HTTTTHHHHHHHHHHHHHHHH
T ss_pred eeccc-CCeEEEEEehHHHHHHHHHhh
Confidence 98775 999999999999999999875
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=94.12 E-value=2.5 Score=40.23 Aligned_cols=187 Identities=16% Similarity=0.150 Sum_probs=101.8
Q ss_pred CcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhh-hhhhhcC
Q 019681 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK-SYYTRYG 205 (337)
Q Consensus 127 ~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~-~~~~~~~ 205 (337)
+...+..+.++++.+...+++.+..--+ |--.+..-...++++|.+.+--++-=.+|=++|+.++-.++. .......
T Consensus 61 ~~~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~ 138 (265)
T COG2116 61 GLAKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTA 138 (265)
T ss_pred chHHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 3456667777777777777766653212 322333344567889998888888778888888877666551 1100111
Q ss_pred CCcc---c-----cCCcccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCcc
Q 019681 206 GGAN---E-----LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGI 277 (337)
Q Consensus 206 ~~~~---~-----~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~ 277 (337)
++.. . -.-+.+..+.|..-++|.++.++.++..-.-|... . .-+.+-+-+ ..+...++.=...
T Consensus 139 ~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~-----~--K~~~m~~pv--~~Fv~~GfeH~VA 209 (265)
T COG2116 139 NGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGA-----A--KIFAIILPV--MLFVASGFEHSVA 209 (265)
T ss_pred cchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchh-----h--HHHHHHHHH--HHHHHcCCceeee
Confidence 1111 0 01123456677777888888888887544322111 1 122222222 2233444454556
Q ss_pred chHhhHHHHHHcCCCCCCCc-ceehh----hhHHHH-HHHHHHHHHHHcccchh
Q 019681 278 NPARSLGAAVIYNKDKAWDD-QWLFW----VGPFIG-AAIAAFYHQFILRAGAV 325 (337)
Q Consensus 278 NPAr~lg~ai~~~~~~~w~~-~wvyw----vgP~iG-a~laa~~~~~~~~~~~~ 325 (337)
|=..-. +...+.+...|.+ .|--+ +|.++| +++-++.|.++++.+..
T Consensus 210 Nm~~i~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~ 262 (265)
T COG2116 210 NMFMIP-WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNR 262 (265)
T ss_pred hHHHHH-HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhcccccc
Confidence 632211 3444555556766 33222 466664 55667888888876653
No 32
>PRK10805 formate transporter; Provisional
Probab=90.38 E-value=14 Score=35.59 Aligned_cols=106 Identities=11% Similarity=0.119 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHhhhhcC-cCCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhh--hhhhhcCC
Q 019681 130 ILGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK--SYYTRYGG 206 (337)
Q Consensus 130 ~l~ia~a~G~~v~~li~~~~~-iSGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~--~~~~~~~~ 206 (337)
.+..+..+...+...+++.+. .+| |-..+++ .+.+|.+|.+.+-.|.-=++|=++|+.++-.+.. ..+....+
T Consensus 68 ~ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~ 143 (285)
T PRK10805 68 KLVGGICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANG 143 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCcc
Confidence 344455555555555555444 344 5555543 5778899998885555555555555554333221 11100000
Q ss_pred C-------ccccCCcccchhhHHHHHHHHHHHHHHHHHhc
Q 019681 207 G-------ANELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (337)
Q Consensus 207 ~-------~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~ 239 (337)
. .....-+.+..+.|+-=++|.++.+..++...
T Consensus 144 ~~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~~ 183 (285)
T PRK10805 144 QWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001134667788888889998888887544
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=86.38 E-value=31 Score=32.92 Aligned_cols=189 Identities=9% Similarity=0.056 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHhhhhcCc-CCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhh---hhhcCC
Q 019681 131 LGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY---YTRYGG 206 (337)
Q Consensus 131 l~ia~a~G~~v~~li~~~~~i-SGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~---~~~~~~ 206 (337)
+..+..+++.+...+++.+.. +| |=....-..+.|+.+|.+.+--|.-=++|=++|+.++-.+.... .....+
T Consensus 59 li~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~ 135 (268)
T PRK11562 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (268)
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 334445665555555544432 22 33333345667889998888777777777777776654443211 110000
Q ss_pred Cc----cccCCcccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhh
Q 019681 207 GA----NELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 282 (337)
Q Consensus 207 ~~----~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~ 282 (337)
.. ..-.-..+..+.|+-=++|.++..+.++.....+.. ..+ +.|-+-+++-. ...+.=...|=- -
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~~~~~------gKi--~~i~~pI~~Fv--~~GFEH~IANm~-~ 204 (268)
T PRK11562 136 SIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIRTEGA------AKF--IAIWWCLLAFI--ASGYEHSVANMT-L 204 (268)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccc------chh--HHHHHHHHHHH--HcCCcchhHhHH-H
Confidence 00 000113456778888889999888888754432211 112 22222222221 122222334411 2
Q ss_pred HHHHHHcCC--CCCCCc---ceeh-hhhHHHHH-HHHHHHHHHHcccchhhhccCccC
Q 019681 283 LGAAVIYNK--DKAWDD---QWLF-WVGPFIGA-AIAAFYHQFILRAGAVKALGSFRS 333 (337)
Q Consensus 283 lg~ai~~~~--~~~w~~---~wvy-wvgP~iGa-~laa~~~~~~~~~~~~~~~~~~~~ 333 (337)
+...++... +..|.+ .+++ .+|-++|+ ++-++.|.++++.+...+...|.+
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~~~~ 262 (268)
T PRK11562 205 FALSWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVAAKFNQ 262 (268)
T ss_pred HHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCchhhhHhh
Confidence 222232211 112222 2233 37888887 456677788886654333333443
No 34
>PRK09713 focB putative formate transporter; Provisional
Probab=81.52 E-value=52 Score=31.65 Aligned_cols=106 Identities=10% Similarity=0.037 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhh-hhhhhcCCCc-
Q 019681 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK-SYYTRYGGGA- 208 (337)
Q Consensus 131 l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~-~~~~~~~~~~- 208 (337)
+..+..++..+.+.+++.+..-=+ |=. ++.-...++++|.+.+-.+.-=.+|=++|+.++-.+.. .......+..
T Consensus 68 ll~g~~F~vGLilIv~~g~ELfTg--N~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~ 144 (282)
T PRK09713 68 LVGGLCFTLGFILLAVCGTSLFTS--SVM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMW 144 (282)
T ss_pred HHHHHHHHHHHHHHHHhCccccHH--HHH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhH
Confidence 434555555555555554443222 212 22234578889888885544444555555444333221 1110000000
Q ss_pred -------cccCCcccchhhHHHHHHHHHHHHHHHHHhc
Q 019681 209 -------NELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (337)
Q Consensus 209 -------~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~ 239 (337)
..-.-+.+..+.|+--++|.++.+..++...
T Consensus 145 ~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~ 182 (282)
T PRK09713 145 GVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSY 182 (282)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001234667888888999999998887544
No 35
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=69.76 E-value=96 Score=28.87 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhh--hcCCC
Q 019681 130 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYT--RYGGG 207 (337)
Q Consensus 130 ~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~--~~~~~ 207 (337)
.+..++.+...+...+++.+..-=+ |-......++.||.+|.+.+--|.-=++|=++|+.++-.+....-. ...+.
T Consensus 43 ~~l~~~~F~~gl~~Iv~~g~eLfTg--n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~ 120 (239)
T TIGR00790 43 KLVGGATFPIGLILVVIAGSDLFTG--NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGP 120 (239)
T ss_pred HHHHHHHHHHHHheeeeeCcccccc--chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccH
Confidence 3434555555554444443332111 3333334466788999988888877777777777765554432100 00000
Q ss_pred ----c---cccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 019681 208 ----A---NELADGYSTGVGLAAEIIGTFVLVYTVFSA 238 (337)
Q Consensus 208 ----~---~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~ 238 (337)
. .....+.+..+.|+.-++|.++..+.++..
T Consensus 121 ~~~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~~ 158 (239)
T TIGR00790 121 WGVGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWMS 158 (239)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001123466778888888888888888643
No 36
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=61.46 E-value=1.4e+02 Score=27.95 Aligned_cols=113 Identities=16% Similarity=0.079 Sum_probs=65.0
Q ss_pred CcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCC
Q 019681 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG 206 (337)
Q Consensus 127 ~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~ 206 (337)
+..-+..++.++..+...+++.+..-=+ |-.+....++.|+.+|.+.+--+.-=.+|=++|+.++-.+....-.....
T Consensus 54 g~~~l~~g~~F~~Gl~lIv~~g~eLfTg--n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~ 131 (250)
T PF01226_consen 54 GLAKLVGGLVFPIGLVLIVFLGGELFTG--NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSS 131 (250)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHT---TTT--TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTT
T ss_pred cHHHHHHHHHHHHHHHHHHHhcchhccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 3444556666666666556555543222 55555667778899999887777766777777776654443311100000
Q ss_pred Cc--------cccCCcccchhhHHHHHHHHHHHHHHHHHhccC
Q 019681 207 GA--------NELADGYSTGVGLAAEIIGTFVLVYTVFSATDP 241 (337)
Q Consensus 207 ~~--------~~~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~ 241 (337)
+. ....-..+..+.|+.=++|.++..+.++.....
T Consensus 132 ~~~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~~~ 174 (250)
T PF01226_consen 132 PAMGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAFAA 174 (250)
T ss_dssp THHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 001123466778888899999999988866543
No 37
>COG0730 Predicted permeases [General function prediction only]
Probab=55.08 E-value=1.7e+02 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=24.7
Q ss_pred hcCCchhHHHHHHHHHhHHHHHHHHHHHHh
Q 019681 167 ARKVSLVRAVMYMVAQCLGAISGVGLVKAF 196 (337)
Q Consensus 167 ~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~ 196 (337)
.++++|+....+..+=++|+.+|+.+...+
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467789999999999999999997666544
No 38
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.75 E-value=4.4 Score=42.55 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=10.0
Q ss_pred CcccchhhhHHHHHh
Q 019681 153 GGHINPAVTFGLFLA 167 (337)
Q Consensus 153 GaHiNPAVTla~~l~ 167 (337)
-=|+|--.+++.+..
T Consensus 281 PYHvdsLLqva~~~r 295 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFR 295 (665)
T ss_pred CcchhHHHHHHHHHH
Confidence 347777777776664
No 39
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=49.05 E-value=3.4e+02 Score=28.49 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=78.7
Q ss_pred HHHHhhhhcCcCCccc---chhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccc
Q 019681 141 IFVLVYCTAGISGGHI---NPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYST 217 (337)
Q Consensus 141 v~~li~~~~~iSGaHi---NPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~ 217 (337)
+..++|...+-++|+. -.+|+.+++....-|-.....++.+.++|+++|....+.+++.-. .
T Consensus 352 ~~~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~---------------~ 416 (650)
T PF04632_consen 352 IAGLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLD---------------G 416 (650)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---------------c
Confidence 3334455545555554 444555555556668889999999999999999999888877431 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCc
Q 019681 218 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDD 297 (337)
Q Consensus 218 ~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~ 297 (337)
+ ..++=+++-++++.. +...++ ..+...+++.++...+.. +-.....|++.-+-
T Consensus 417 f-~~L~l~l~~~l~~~~-~~~~~p----------~~~~~g~~~~v~f~~~~~-~~n~~~~d~~~f~n------------- 470 (650)
T PF04632_consen 417 F-PLLALVLAPFLFLGG-LLMARP----------RTAYIGLGFAVFFLLLLG-PGNPYSYDFATFLN------------- 470 (650)
T ss_pred H-HHHHHHHHHHHHHHH-HHHcCc----------hHHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHH-------------
Confidence 1 111112222222222 222332 344555665555554432 22223344332211
Q ss_pred ceehhhhHHHHHHHHHHHHHHHcccchh
Q 019681 298 QWLFWVGPFIGAAIAAFYHQFILRAGAV 325 (337)
Q Consensus 298 ~wvywvgP~iGa~laa~~~~~~~~~~~~ 325 (337)
=.++-++|.+++.+.+.++.+.++.
T Consensus 471 ---~~la~l~G~~~a~l~~~li~p~~~~ 495 (650)
T PF04632_consen 471 ---RALAILLGIVIAALVFRLIRPFSPE 495 (650)
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCCChh
Confidence 2367889999999999988766543
No 40
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=44.54 E-value=36 Score=25.50 Aligned_cols=32 Identities=28% Similarity=0.746 Sum_probs=20.5
Q ss_pred HhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHH
Q 019681 280 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAF 314 (337)
Q Consensus 280 Ar~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~ 314 (337)
..++|-++.-+.+-.-+..| ||+| +|+++|-.
T Consensus 9 ~~tlG~~vL~~rG~~~~~~W-yWIg--vgaL~G~~ 40 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYW-YWIG--VGALLGFI 40 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcE-Eeeh--HHHHHHHH
Confidence 36889888865444444444 8876 57777743
No 41
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=38.50 E-value=63 Score=26.43 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 019681 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKS 199 (337)
Q Consensus 171 s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~ 199 (337)
+..+-++|+++-++||=.|..+++++.+.
T Consensus 73 ~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 73 DIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 45588999999999999999999887553
No 42
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=38.12 E-value=11 Score=36.95 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.3
Q ss_pred hhhcCcCCcccchhhhHHHHHhc
Q 019681 146 YCTAGISGGHINPAVTFGLFLAR 168 (337)
Q Consensus 146 ~~~~~iSGaHiNPAVTla~~l~g 168 (337)
.++++=+|||+.||+.++-.+..
T Consensus 5 ~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 5 VFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHh
Confidence 35667789999999999998864
No 43
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=34.69 E-value=4.2e+02 Score=25.45 Aligned_cols=51 Identities=24% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHhhhhcCcCCccc-chhhhHHHHHhcCC-----chhHHHH------HHHHHhHHHHHHHHHHHHh
Q 019681 142 FVLVYCTAGISGGHI-NPAVTFGLFLARKV-----SLVRAVM------YMVAQCLGAISGVGLVKAF 196 (337)
Q Consensus 142 ~~li~~~~~iSGaHi-NPAVTla~~l~g~~-----s~~~a~~------Yi~AQ~lGai~ga~lv~~~ 196 (337)
..++..+. -+. ||+..+..++..++ |..-.-+ -++.|-+-+.++......+
T Consensus 101 l~lv~~F~----~~~~sp~l~~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~ 163 (274)
T PF12811_consen 101 LALVISFK----RKVWSPALAPIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLA 163 (274)
T ss_pred HHHHHHhC----CccCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34444443 366 99999998887554 3322222 2778877777766554443
No 44
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=32.47 E-value=6.9e+02 Score=27.25 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 019681 171 SLVRAVMYMVAQCLGAISGVGLVKAFQK 198 (337)
Q Consensus 171 s~~~a~~Yi~AQ~lGai~ga~lv~~~~~ 198 (337)
+..|....+++.++|+++|..+...+.+
T Consensus 394 T~sRa~~RiiGTliGallA~ll~v~l~P 421 (683)
T PRK11427 394 SYQKMVLRFGGAFCGAILALLFTLLVMP 421 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5568888899999999999998877765
No 45
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.99 E-value=19 Score=32.38 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.6
Q ss_pred eeccccCCchhhHhHhhhHHHhhhhc
Q 019681 4 FISHTKNKPKKRKRKRKRKRLLSRCA 29 (337)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (337)
+.|||.+-|+.|||+-+..||.|--+
T Consensus 29 ~lshIe~ap~pkW~~L~NRRLqNyGG 54 (224)
T KOG3200|consen 29 YLSHIENAPQPKWRVLANRRLQNYGG 54 (224)
T ss_pred HHHHHhcCCCchhHHHHhhhhhhcCC
Confidence 45899999999999999999988644
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=29.14 E-value=13 Score=30.52 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=17.4
Q ss_pred cCcCCcccchhhhHHHHHhcC
Q 019681 149 AGISGGHINPAVTFGLFLARK 169 (337)
Q Consensus 149 ~~iSGaHiNPAVTla~~l~g~ 169 (337)
+.=|+||+||.+.++..|.++
T Consensus 5 ~~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 5 TGGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp EESSHHHHHHHHHHHHHHHHT
T ss_pred EcCChhHHHHHHHHHHHHhcc
Confidence 334789999999999999854
No 47
>PRK10621 hypothetical protein; Provisional
Probab=29.06 E-value=4.7e+02 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.8
Q ss_pred cCCchhHHHHHHHHHhHHHHHHHHHHHHh
Q 019681 168 RKVSLVRAVMYMVAQCLGAISGVGLVKAF 196 (337)
Q Consensus 168 g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~ 196 (337)
++++|+..+...++=+.|+++|+.+...+
T Consensus 73 ~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l 101 (266)
T PRK10621 73 KVVNLADQKLNIAMTFVGSMSGALLVQYV 101 (266)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56889999999999999999999887654
No 48
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=28.16 E-value=4.4e+02 Score=23.57 Aligned_cols=27 Identities=11% Similarity=0.269 Sum_probs=22.8
Q ss_pred CCchhHHHHHHHHHhHHHHHHHHHHHH
Q 019681 169 KVSLVRAVMYMVAQCLGAISGVGLVKA 195 (337)
Q Consensus 169 ~~s~~~a~~Yi~AQ~lGai~ga~lv~~ 195 (337)
+++|+....+...-..|+++|+.+...
T Consensus 60 ~i~~~~~~~~~~~~~~g~~iG~~l~~~ 86 (240)
T PF01925_consen 60 NIDWKIVLPLIIGALIGVVIGAWLLSL 86 (240)
T ss_pred ccchhhhhhhhhHhHHHHHHHHhhhcc
Confidence 489999999999999999999887663
No 49
>PF13786 DUF4179: Domain of unknown function (DUF4179); PDB: 3FBQ_A.
Probab=26.91 E-value=21 Score=27.64 Aligned_cols=6 Identities=50% Similarity=1.071 Sum_probs=0.0
Q ss_pred hhhHHH
Q 019681 19 RKRKRL 24 (337)
Q Consensus 19 ~~~~~~ 24 (337)
+++++.
T Consensus 8 ~~~~~~ 13 (94)
T PF13786_consen 8 KKKKRI 13 (94)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444443
No 50
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=23.49 E-value=73 Score=23.42 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=35.9
Q ss_pred CchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHH
Q 019681 252 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 312 (337)
Q Consensus 252 ~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~la 312 (337)
....+.||++.....+..+.+.|.+=+=.+.+.+ ....+++.+.|.+|=++|+.+.
T Consensus 6 l~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~-----~~~~~~W~~~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 6 LIGGLLIGLAASLLLLLNGRIAGISGILSGLLSP-----NKPDRDWRLAFLAGLILGGFLA 61 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC-----CCCCccHHHHHHHHHHHHHHHh
Confidence 4567889999888888888888876332222221 2234445677777777777654
No 51
>PF08188 Protamine_3: Spermatozal protamine family; InterPro: IPR012601 This entry consists of the spermatozal protamines. Spermatozal protamines play an important role in remodelling of the sperm chromatin during mammalian spermiogenesis. Nuclear elongation and chromatin condensation are concomitant with modifications in the basic protein complement associated with DNA. Somatic histones are initially replaced by testis-specific histone variants, then by transitional proteins, and ultimately by protamines [].; GO: 0003677 DNA binding, 0035092 sperm chromatin condensation, 0000228 nuclear chromosome
Probab=22.31 E-value=58 Score=22.08 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=8.0
Q ss_pred chhhHhHhhhHHHhhhh
Q 019681 12 PKKRKRKRKRKRLLSRC 28 (337)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (337)
|||||.+|.||---||.
T Consensus 8 kkkrksvrrrktrknqr 24 (48)
T PF08188_consen 8 KKKRKSVRRRKTRKNQR 24 (48)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 34555555554444443
No 52
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=21.58 E-value=23 Score=35.81 Aligned_cols=13 Identities=62% Similarity=0.823 Sum_probs=6.4
Q ss_pred CchhhHhHhhhHH
Q 019681 11 KPKKRKRKRKRKR 23 (337)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (337)
||||||.+|+|+|
T Consensus 2 kk~~~Ks~~~k~r 14 (396)
T PF09692_consen 2 KKKKKKSKRGKKR 14 (396)
T ss_pred CCCCCCccCCCCC
Confidence 4444445555554
No 53
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=21.43 E-value=84 Score=32.56 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=14.0
Q ss_pred hHhHhhhHHHhhhhccCccccce
Q 019681 15 RKRKRKRKRLLSRCACGFAVLSV 37 (337)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (337)
-||+|||=..-.=-+| ++||.|
T Consensus 317 DKRrRnRCQyCRfQKC-L~VGMV 338 (605)
T KOG4217|consen 317 DKRRRNRCQYCRFQKC-LAVGMV 338 (605)
T ss_pred chhhhhhchhhhHhHH-HHhhhh
Confidence 4677887766666677 445544
No 54
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=21.24 E-value=3.9e+02 Score=30.11 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019681 90 ALIAEFIATLLFLYVTVL 107 (337)
Q Consensus 90 ~~iaEfigT~llv~i~~~ 107 (337)
++-...+++.+|+|+++.
T Consensus 366 a~~~q~laa~ifiyFA~L 383 (900)
T TIGR00834 366 ALNPQCLAAVIFIYFAAL 383 (900)
T ss_pred hhcchhHHHHHHHHHHHh
Confidence 344577788888887654
No 55
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=20.55 E-value=2.4e+02 Score=27.74 Aligned_cols=49 Identities=18% Similarity=0.457 Sum_probs=32.8
Q ss_pred cCccchHhhHHHHHH-----cCCCCCCCccee-hhhhHHHHHHHHHHHHHHHccc
Q 019681 274 GTGINPARSLGAAVI-----YNKDKAWDDQWL-FWVGPFIGAAIAAFYHQFILRA 322 (337)
Q Consensus 274 G~~~NPAr~lg~ai~-----~~~~~~w~~~wv-ywvgP~iGa~laa~~~~~~~~~ 322 (337)
|-.+.|-..|++..+ .+.-.++.+||. -+.|-++|+.+|.+.+.+++..
T Consensus 210 ~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~ 264 (317)
T KOG3030|consen 210 GRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPN 264 (317)
T ss_pred chhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcch
Confidence 344455555544333 123356778887 5689999999999999988754
No 56
>KOG0009 consensus Ubiquitin-like/40S ribosomal S30 protein fusion [Translation, ribosomal structure and biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=36 Score=24.98 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=12.2
Q ss_pred cCCchhhHhHhhhHHHhhh
Q 019681 9 KNKPKKRKRKRKRKRLLSR 27 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (337)
+|-||||++-|-++||.-.
T Consensus 23 kqeK~kkk~GRa~~Rlqy~ 41 (62)
T KOG0009|consen 23 KQEKKKKKRGRAKKRLQYN 41 (62)
T ss_pred hhhhcccccchHHHHhhhh
Confidence 4556666667777777643
Done!