Query 019683
Match_columns 337
No_of_seqs 147 out of 414
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 1E-85 2.2E-90 646.5 24.8 297 5-337 1-310 (374)
2 KOG2777 tRNA-specific adenosin 100.0 2.6E-78 5.6E-83 606.0 19.2 293 5-337 173-476 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 1.6E-74 3.4E-79 563.3 11.2 271 51-337 1-285 (343)
4 COG0590 CumB Cytosine/adenosin 74.3 15 0.00033 32.0 7.4 33 46-87 38-70 (152)
5 PRK10860 tRNA-specific adenosi 57.2 99 0.0021 27.5 9.3 15 131-145 83-97 (172)
6 cd01285 nucleoside_deaminase N 38.7 30 0.00064 28.0 2.7 16 131-146 68-83 (109)
7 cd01284 Riboflavin_deaminase-r 38.7 69 0.0015 26.6 5.0 36 34-85 20-55 (115)
8 PF15134 DUF4570: Domain of un 35.4 23 0.0005 29.5 1.5 23 70-95 10-32 (109)
9 cd01283 cytidine_deaminase Cyt 31.4 30 0.00065 28.0 1.6 18 130-147 65-87 (112)
10 PF14737 DUF4470: Domain of un 27.3 46 0.001 26.6 2.0 21 69-89 56-76 (100)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=1e-85 Score=646.51 Aligned_cols=297 Identities=44% Similarity=0.711 Sum_probs=239.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHH
Q 019683 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (337)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~~-~~~~vvslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (337)
.|||+||++|+++|++||++|||..+|||||||||++++. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 3799999999999999999999999999999999999874 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCCC-ceeeeCCcEEEEEeccCCCCccccccccCCCCCCCCc----
Q 019683 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSR---- 158 (337)
Q Consensus 84 f~r~L~~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~~~~~---- 158 (337)
|+||||+||+.+.++ . .+.||+..+++ +|+||+||+||||||++|||||||+.+.....+....
T Consensus 81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 999999999987542 1 34578776554 9999999999999999999999999766433221000
Q ss_pred C----CCCCCcccccCCccccccccccccceeeeCCCCC--CcccccchhHHHHHHHHhhhhhhhhhhccccceeceEEe
Q 019683 159 E----GNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (337)
Q Consensus 159 ~----~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGRg--d~t~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivv 232 (337)
. +.........+|+. +++..|+|||||||+ ++|+||||||||||||||||||||||||||||||++|||
T Consensus 150 ~~~~~~~~~~~~~~~~g~~-----~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv 224 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGTV-----PVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL 224 (374)
T ss_pred cccccccccccccccCCcc-----cccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence 0 01111112223332 366789999999999 569999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHhhhhhhcccccccccCCCCceeccceEEecCCCCcccccCcccccccCccccEEeeCCCC-eeeE
Q 019683 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEVI 311 (337)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~-~Evi 311 (337)
|.... .+++|+|||++|+.++ ..+|.+|.+++|++...+ ..+|+. . ....+ ..|+||+.++. +|++
T Consensus 225 g~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~~--~~~~~~-~--~~~s~-~~Sl~W~~~~~~~ev~ 291 (374)
T smart00552 225 GKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLVS--VADFQR-Q--TAKSP-NFSVNWSQGDESLEIL 291 (374)
T ss_pred cCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeeccC--cccccc-c--CCCCC-CCeEEEEeCCCcEEEE
Confidence 96432 2479999999999987 578999999999986533 335521 1 11122 34899998765 8999
Q ss_pred ECCCCccCCccCCCCCCCCCCCCCCC
Q 019683 312 LGTTGRKQGTSAKGALSPSTQSSLCK 337 (337)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~S~lCk 337 (337)
+|.+|+++ ..++++|+|||
T Consensus 292 ng~~G~~~-------~~~~~~S~lcK 310 (374)
T smart00552 292 NGLTGKTQ-------KSLGSPSRLCK 310 (374)
T ss_pred ECcCCeEC-------CCCCCccHHHH
Confidence 99999888 24677899997
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-78 Score=606.00 Aligned_cols=293 Identities=42% Similarity=0.674 Sum_probs=238.9
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEee-CCCCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHH
Q 019683 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (337)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~-~~~~~~vvslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (337)
.++|+||++|+++|++|+++|+|..+|||||||||+.. +..+.+||||||||||++++.|+.+|.+|||||||||||||
T Consensus 173 ~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR~ 252 (542)
T KOG2777|consen 173 TLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARRG 252 (542)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHHH
Confidence 58999999999999999999999999999999999987 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCCC-ceeeeCCcEEEEEeccCCCCccccccccCCCCCC-----CC
Q 019683 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-----FS 157 (337)
Q Consensus 84 f~r~L~~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~~-----~~ 157 (337)
|+||||+||+.+.+. ..+.||+..++| +|+||+||.||||||++|||||+++.......+. ..
T Consensus 253 llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~~ 321 (542)
T KOG2777|consen 253 LLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNST 321 (542)
T ss_pred HHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCch
Confidence 999999999998642 144688866554 6999999999999999999999998764332221 11
Q ss_pred cCCCCCCcccccCCccccccccccccceeeeCCCC--CCcccccchhHHHHHHHHhhhhhhhhhhccccceeceEEeCCC
Q 019683 158 REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRS 235 (337)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGR--gd~t~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivvg~~ 235 (337)
..+..+..+..++|+. .++..+.||||||| |++++||||||||+|||||||||||||||++||||+|||||..
T Consensus 322 ~~~~~~~~~~~g~g~~-----~~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~~ 396 (542)
T KOG2777|consen 322 RRGQLRTKIESGEGTI-----PVGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGKS 396 (542)
T ss_pred hhhccchhhhcccccc-----ccCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEeccc
Confidence 1223333334444443 35678999999999 8899999999999999999999999999999999999999975
Q ss_pred CCCCCCcchHHHhhhhhhccccc-ccccCCCCceeccceEEecCCCCcccccCcccccccCccccEEeeCCC-CeeeEEC
Q 019683 236 PNTSEDFPLEEHLKRSLYDRILP-LSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVILG 313 (337)
Q Consensus 236 ~~~~~~~~~~~~l~Ra~~~R~~~-~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi~~ 313 (337)
.++ .++|+|||+.|+.. +. .+|.+|.+|.|++... ++.+ + .+..++++|+||+.++ ..||++.
T Consensus 397 ~~~------~~~L~rAi~~R~~~~~~-~lp~~~~~n~p~~~~v--~~~~-r-----~~~~~~~~slnW~~~~~~~ev~d~ 461 (542)
T KOG2777|consen 397 LHS------PEHLSRAIHGRLSNFLG-NLPPPYILNPPLLSRV--SDAE-R-----QPGKMTPFSLNWSLGDYDLEVNDV 461 (542)
T ss_pred cCC------HHHHHHHHhcccccccC-CCCCceeecCcccccC--CHhH-h-----ccccCCceeeeeecCCcceEeccc
Confidence 443 36999999999988 54 4899999999988764 2223 2 2333445899999877 7888888
Q ss_pred CCCccCCccCCCCCCCCCCCCCCC
Q 019683 314 TTGRKQGTSAKGALSPSTQSSLCK 337 (337)
Q Consensus 314 ~~G~k~G~~~K~~~~~~~~S~lCk 337 (337)
.+|++-+ +.+|+|||
T Consensus 462 ~~G~~~~---------~~~srlcK 476 (542)
T KOG2777|consen 462 TTGRTSL---------GSASRLCK 476 (542)
T ss_pred ccCcccC---------CCccHHHH
Confidence 8887322 34588887
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=1.6e-74 Score=563.28 Aligned_cols=271 Identities=42% Similarity=0.670 Sum_probs=144.8
Q ss_pred EEeeCCCcccCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccCCCccccccCCCCCeeeeeC--CCCceeeeCC
Q 019683 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (337)
Q Consensus 51 slgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (337)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+.++... ....+||+.. .+++|+||+|
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~-------~~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGSG-------DKESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccCceEeecCCCCceeEeCCC
Confidence 799999999999999999999999999999999999999999998643100 0123567654 5679999999
Q ss_pred cEEEEEeccCCCCccccccccCCCCCC--CCc---CCCCCCcccccCC-------ccccccccccccceeeeCCCCCCcc
Q 019683 129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSR---EGNSLSSVDELNG-------FKDGIYDSLQHIGRVQRKPGRGDTT 196 (337)
Q Consensus 129 v~lhLYiS~~PCGDAsi~~~~~~~~~~--~~~---~~~~~~~~~~~~g-------~~~~~~~~~~~~g~vrtKPGRgd~t 196 (337)
|+||||||++|||||||+.+.....+. ... ........ ...+ ........++..|++||||||||++
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~ 152 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKI-TGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRT 152 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEE-TSSSEEE--SS----------HHHHH-----TT---
T ss_pred eEEEEEeccCccCcccccccccccccccccccccccccccccc-CCCcccCCCccccccccccccCCceeeeeccccCCC
Confidence 999999999999999999876521110 000 00000000 0111 0011124678899999999999999
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhccccceeceEEeCCCCCCCCCcchHHHhhhhhhcccccccccCCCCceeccceEEe
Q 019683 197 LSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLA 276 (337)
Q Consensus 197 ~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivvg~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~ 276 (337)
.||||||||+|||||||||||||+|||||||++||||..+. + .+++|+|||++|+......++.||++++|++..
T Consensus 153 ~smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~-~~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~ 227 (343)
T PF02137_consen 153 PSMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----F-SQEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF 227 (343)
T ss_dssp EEE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred cceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----C-CHHHHHhhhhcccccccccCCCCceecCcceee
Confidence 99999999999999999999999999999999999997642 1 246899999999955556789999999998874
Q ss_pred cCCCCcccccCcccccccCccccEEeeCCCCeeeEECCCCccCCccCCCCCCCCCCCCCCC
Q 019683 277 ASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCK 337 (337)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~~Evi~~~~G~k~G~~~K~~~~~~~~S~lCk 337 (337)
.... .............++++||+|+..+..|+++ +|+|+|+++|+...++++|+|||
T Consensus 228 ~~~~-~~~~~~~~~~~~~~s~~Si~W~~~~~~~i~~--~g~k~G~~~k~~~~~~~~S~lck 285 (343)
T PF02137_consen 228 SSSR-FSDSSASSSEKAKPSNLSINWCASGEEEIEV--NGVKQGRSKKKSPSPKAASRLCK 285 (343)
T ss_dssp ------E-SS------S---SEEEEEET-T-SS-EE--EETTTTE-----ETTS---TTSH
T ss_pred cccc-cccccccccCCCCCCCceEEEEecCCcEEEE--eCCCCCcccccCCCCCccCcccH
Confidence 3210 1222333444667889999999856668877 99999999999999999999997
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=74.30 E-value=15 Score=31.99 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=21.7
Q ss_pred CeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHHHHHH
Q 019683 46 DLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRF 87 (337)
Q Consensus 46 ~~~vvslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~ 87 (337)
+-++|+-|-.+..-..+-.. ||||+|.|.+-+-
T Consensus 38 ~~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~ 70 (152)
T COG0590 38 DGEIIARGHNRREEDNDPTA---------HAEILAIRAAAET 70 (152)
T ss_pred CCCEEEEecCccccCCCccc---------cHHHHHHHHHHHh
Confidence 34677777766554433211 9999999988443
No 5
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=57.20 E-value=99 Score=27.55 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.3
Q ss_pred EEEEeccCCCCcccc
Q 019683 131 LHLYISQLPCGDASL 145 (337)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (337)
.-||+|-.||--++.
T Consensus 83 ~tlY~TlEPC~MC~~ 97 (172)
T PRK10860 83 ATLYVTLEPCVMCAG 97 (172)
T ss_pred cEEEeeCCCcHHHHH
Confidence 468999999964443
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=38.68 E-value=30 Score=28.04 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.0
Q ss_pred EEEEeccCCCCccccc
Q 019683 131 LHLYISQLPCGDASLS 146 (337)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (337)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 6789999999766654
No 7
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=38.67 E-value=69 Score=26.55 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=23.1
Q ss_pred eEEEEEEeeCCCCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHHHH
Q 019683 34 VLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALL 85 (337)
Q Consensus 34 vLA~iVl~~~~~~~~vvslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~ 85 (337)
.++|+|+.. +-+||+.|.-... -..|||+.|.|.+.
T Consensus 20 pvGaviv~~---~g~iv~~g~n~~~-------------~~~HAE~~ai~~a~ 55 (115)
T cd01284 20 PVGCVIVDD---DGEIVGEGYHRKA-------------GGPHAEVNALASAG 55 (115)
T ss_pred CEEEEEEeC---CCeEEEEecCCCC-------------CcccHHHHHHHHHh
Confidence 356665532 2488887665532 24699999998773
No 8
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=35.36 E-value=23 Score=29.46 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Q 019683 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (337)
Q Consensus 70 ~lhD~HAEVLARR~f~r~L~~el~~~ 95 (337)
-|++-|.|||++|.+ |+++++.-
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 378899999999987 56666653
No 9
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=31.37 E-value=30 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.1
Q ss_pred EEEEEec-----cCCCCcccccc
Q 019683 130 QLHLYIS-----QLPCGDASLSS 147 (337)
Q Consensus 130 ~lhLYiS-----~~PCGDAsi~~ 147 (337)
..-+|+| -+|||.++-..
T Consensus 65 ~~~i~vs~~~~~~sPC~~C~~~l 87 (112)
T cd01283 65 LVTWAVSDEGGVWSPCGACRQVL 87 (112)
T ss_pred EEEEEEECCCCccCCCHHHHHHH
Confidence 4568888 89999987654
No 10
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=27.26 E-value=46 Score=26.58 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.5
Q ss_pred CccchhHHHHHHHHHHHHHHH
Q 019683 69 DIVNDSHAEIVARRALLRFFY 89 (337)
Q Consensus 69 ~~lhD~HAEVLARR~f~r~L~ 89 (337)
-.|+|.++||+||--|+-.++
T Consensus 56 ~~l~D~~~~vlARnlLlL~ll 76 (100)
T PF14737_consen 56 FTLNDINPEVLARNLLLLQLL 76 (100)
T ss_pred EEEecCcHHHHHHHHHHHHHH
Confidence 489999999999999987775
Done!