Query 019683
Match_columns 337
No_of_seqs 147 out of 414
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 1.8E-81 6E-86 620.3 21.3 297 4-337 23-331 (403)
2 1p6o_A Cytosine deaminase; hyd 56.5 3.7 0.00012 34.9 1.3 15 131-145 85-99 (161)
3 1wwr_A TRNA adenosine deaminas 46.8 6.8 0.00023 33.6 1.4 16 131-146 93-108 (171)
4 2b3j_A TRNA adenosine deaminas 45.2 9.6 0.00033 32.1 2.1 16 131-146 77-92 (159)
5 2a8n_A Cytidine and deoxycytid 42.7 14 0.00049 30.3 2.8 16 131-146 74-89 (144)
6 2nx8_A TRNA-specific adenosine 41.4 18 0.0006 31.2 3.2 15 131-145 86-100 (179)
7 1z3a_A TRNA-specific adenosine 41.1 11 0.00039 32.0 1.9 15 131-145 79-93 (168)
8 2g84_A Cytidine and deoxycytid 40.8 16 0.00056 31.8 3.0 15 131-145 105-119 (197)
9 1wkq_A Guanine deaminase; doma 40.5 19 0.00064 30.6 3.2 15 131-145 82-96 (164)
10 3dh1_A TRNA-specific adenosine 35.8 13 0.00045 32.3 1.5 15 74-88 74-88 (189)
11 3v4k_A DNA DC->DU-editing enzy 28.2 11 0.00039 33.3 -0.2 19 128-146 99-117 (203)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-81 Score=620.35 Aligned_cols=297 Identities=36% Similarity=0.594 Sum_probs=231.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHH
Q 019683 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (337)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~--~~~~~vvslgTGtKc~~~~~l~~~G~~lhD~HAEVLAR 81 (337)
..|||+||++|+++|++|++++||...|||||||||++.+ .++++||||||||||++++.++.+|++|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 3589999999999999999999999889999999999975 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCCCceeeeCCcEEEEEeccCCCCccccccccCCCCCC-----C
Q 019683 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-----F 156 (337)
Q Consensus 82 R~f~r~L~~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~~-----~ 156 (337)
|||+||||+||+.+.... ++. ..+||++.++|+|+||+||+||||||++|||||||+.+.+..... +
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~ 174 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP 174 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence 999999999998775210 011 345899888889999999999999999999999998754321110 0
Q ss_pred C--cCCCCCCcccccCCccccccccccccceeeeCCC--CCCcccccchhHHHHHHHHhhhhhhhhhhccccceeceEEe
Q 019683 157 S--REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (337)
Q Consensus 157 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPG--Rgd~t~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivv 232 (337)
. ..+.+...+..++|+.... ..+.++|+|| ||++|+||||||||+|||||||||||||||+|||||++|||
T Consensus 175 ~~~~~g~lr~k~~~g~g~~p~~-----~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~ 249 (403)
T 1zy7_A 175 NRKARGQLRTKIESGEGTIPVR-----SNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL 249 (403)
T ss_dssp --CCTTCCEEEETTCSSCEECC-----SSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred chhhccccceeeccCCCCCCCC-----CcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence 0 0112222222333333211 1233566677 88999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHhhhhhhcccccccccCCCCceeccceEEecCCCCcccccCcccccccCccccEEeeCCC-CeeeE
Q 019683 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVI 311 (337)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi 311 (337)
|..++ .++|+|||++|+..+ ..+|.||++++|.+...+.. +.+. +..++++|+||+.++ ..||+
T Consensus 250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r~-----~~~~~~~Si~W~~~~~~~Evi 314 (403)
T 1zy7_A 250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EARQ-----PGKAPNFSVNWTVGDSAIEVI 314 (403)
T ss_dssp SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCCC-----CSCCCSEEEEEETTCSSCEEE
T ss_pred CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--cccc-----CCCCCCeeEEEEcCCCceEEE
Confidence 98753 478999999999875 45799999999998764322 2221 223557899999764 58999
Q ss_pred ECCCCccCCccCCCCCCCCCCCCCCC
Q 019683 312 LGTTGRKQGTSAKGALSPSTQSSLCK 337 (337)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~S~lCk 337 (337)
++.+||+ .++.+|+|||
T Consensus 315 ~g~tGk~---------~~~~~SrlcK 331 (403)
T 1zy7_A 315 NATTGKD---------ELGRASRLCK 331 (403)
T ss_dssp ETTTTEE---------TTSCCCTTSH
T ss_pred ECCCCCC---------CcCCcCHHHH
Confidence 9988873 2345799997
No 2
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=56.52 E-value=3.7 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcccc
Q 019683 131 LHLYISQLPCGDASL 145 (337)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (337)
..||+|..||+-+..
T Consensus 85 ~tlYvT~EPC~mC~~ 99 (161)
T 1p6o_A 85 TTLYTTLSPCDMCTG 99 (161)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred cccccCCCCCHHHHH
Confidence 468999999986654
No 3
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=46.82 E-value=6.8 Score=33.63 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q 019683 131 LHLYISQLPCGDASLS 146 (337)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (337)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999877654
No 4
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=45.25 E-value=9.6 Score=32.07 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.7
Q ss_pred EEEEeccCCCCccccc
Q 019683 131 LHLYISQLPCGDASLS 146 (337)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (337)
..||+|..||+-++.-
T Consensus 77 ~tlyvT~EPC~mC~~a 92 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGT 92 (159)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 4689999999876653
No 5
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=42.75 E-value=14 Score=30.32 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.5
Q ss_pred EEEEeccCCCCccccc
Q 019683 131 LHLYISQLPCGDASLS 146 (337)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (337)
.-||+|..||+-++.-
T Consensus 74 ~tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAA 89 (144)
T ss_dssp CEEEEEECCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 3689999999876654
No 6
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=41.42 E-value=18 Score=31.17 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcccc
Q 019683 131 LHLYISQLPCGDASL 145 (337)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (337)
.-||+|-.||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 478999999976654
No 7
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=41.08 E-value=11 Score=32.02 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcccc
Q 019683 131 LHLYISQLPCGDASL 145 (337)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (337)
.-||+|-.||+-++.
T Consensus 79 ~tlYvTlEPC~mC~~ 93 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAG 93 (168)
T ss_dssp CEEEEEECCCHHHHH
T ss_pred cEEEEcCCCcHHHHH
Confidence 368999999976665
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=40.83 E-value=16 Score=31.84 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 019683 131 LHLYISQLPCGDASL 145 (337)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (337)
.-||+|..||--+..
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 578999999974443
No 9
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=40.51 E-value=19 Score=30.60 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcccc
Q 019683 131 LHLYISQLPCGDASL 145 (337)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (337)
.-||+|..||.-++.
T Consensus 82 ~tlYvT~EPC~mCa~ 96 (164)
T 1wkq_A 82 CILYTSCEPCPMCLG 96 (164)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEEeCCChHHHHH
Confidence 468999999976654
No 10
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=35.83 E-value=13 Score=32.32 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q 019683 74 SHAEIVARRALLRFF 88 (337)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (337)
.||||+|.|...+++
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 599999999886654
No 11
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=28.18 E-value=11 Score=33.30 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=15.8
Q ss_pred CcEEEEEeccCCCCccccc
Q 019683 128 GWQLHLYISQLPCGDASLS 146 (337)
Q Consensus 128 ~v~lhLYiS~~PCGDAsi~ 146 (337)
.+++..|+|-+||-+++-.
T Consensus 99 ~Y~vTwy~SWSPC~~CA~~ 117 (203)
T 3v4k_A 99 DYRVTCFTSWSPCFSCAQE 117 (203)
T ss_pred eEEEEEEEeCCChHHHHHH
Confidence 3689999999999987753
Done!