Query 019684
Match_columns 337
No_of_seqs 399 out of 3565
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02490 MPBQ/MSBQ methyltrans 100.0 5.8E-51 1.2E-55 372.3 28.0 336 1-337 1-340 (340)
2 COG2226 UbiE Methylase involve 99.9 2.2E-25 4.7E-30 193.4 20.1 179 74-254 14-225 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 2.7E-25 5.9E-30 194.7 8.9 177 74-255 10-222 (233)
4 PLN02233 ubiquinone biosynthes 99.9 2.6E-23 5.6E-28 186.1 21.1 183 72-255 34-250 (261)
5 KOG1540 Ubiquinone biosynthesi 99.9 3.3E-22 7.2E-27 170.3 20.0 233 4-250 2-278 (296)
6 PLN02244 tocopherol O-methyltr 99.9 1.3E-21 2.8E-26 181.6 22.1 188 69-257 57-282 (340)
7 TIGR02752 MenG_heptapren 2-hep 99.9 2.4E-21 5.3E-26 170.7 21.1 180 75-255 9-220 (231)
8 PTZ00098 phosphoethanolamine N 99.9 5.8E-21 1.3E-25 171.1 17.9 160 98-259 41-208 (263)
9 PLN02396 hexaprenyldihydroxybe 99.9 4.9E-21 1.1E-25 175.0 15.4 144 110-255 131-291 (322)
10 smart00828 PKS_MT Methyltransf 99.9 3.1E-21 6.7E-26 169.2 12.1 205 112-331 1-212 (224)
11 PRK14103 trans-aconitate 2-met 99.8 5.5E-20 1.2E-24 164.5 17.8 146 101-252 21-183 (255)
12 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.2E-20 4.7E-25 159.5 12.8 144 110-255 59-217 (243)
13 PLN02336 phosphoethanolamine N 99.8 7.4E-20 1.6E-24 177.9 18.0 155 102-258 259-419 (475)
14 PRK00216 ubiE ubiquinone/menaq 99.8 4.4E-19 9.6E-24 156.8 20.2 182 74-257 14-229 (239)
15 PRK11036 putative S-adenosyl-L 99.8 1.4E-19 3E-24 161.9 16.2 145 109-255 43-209 (255)
16 PF13489 Methyltransf_23: Meth 99.8 2E-20 4.4E-25 155.1 9.6 133 109-250 21-160 (161)
17 PF08241 Methyltransf_11: Meth 99.8 5.9E-20 1.3E-24 138.3 10.9 95 115-210 1-95 (95)
18 PRK15068 tRNA mo(5)U34 methylt 99.8 1.6E-19 3.4E-24 166.1 15.7 146 110-258 122-279 (322)
19 PRK05785 hypothetical protein; 99.8 3.8E-19 8.1E-24 155.8 17.0 173 73-255 11-213 (226)
20 PRK08317 hypothetical protein; 99.8 1.3E-18 2.8E-23 153.6 18.9 160 95-255 5-178 (241)
21 TIGR00452 methyltransferase, p 99.8 8.3E-19 1.8E-23 159.7 16.8 165 89-257 100-277 (314)
22 PRK11873 arsM arsenite S-adeno 99.8 3.2E-18 7E-23 154.5 19.6 147 109-255 76-232 (272)
23 PRK10258 biotin biosynthesis p 99.8 2.7E-18 5.9E-23 153.2 18.4 149 95-248 28-182 (251)
24 PF13847 Methyltransf_31: Meth 99.8 4.7E-19 1E-23 146.0 12.1 135 110-245 3-152 (152)
25 PRK15451 tRNA cmo(5)U34 methyl 99.8 5E-19 1.1E-23 157.4 13.2 141 109-251 55-228 (247)
26 PF02353 CMAS: Mycolic acid cy 99.8 1.2E-18 2.6E-23 156.2 13.5 162 97-263 50-227 (273)
27 TIGR02072 BioC biotin biosynth 99.8 2.4E-18 5.3E-23 152.0 15.4 143 110-254 34-177 (240)
28 TIGR00740 methyltransferase, p 99.8 2.3E-18 5E-23 152.5 14.6 141 109-251 52-225 (239)
29 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 1.6E-17 3.5E-22 145.2 18.4 146 110-255 39-212 (223)
30 PRK01683 trans-aconitate 2-met 99.8 1.9E-17 4E-22 148.4 18.9 146 99-248 21-182 (258)
31 PF12847 Methyltransf_18: Meth 99.8 2.2E-18 4.9E-23 134.2 9.6 102 110-212 1-111 (112)
32 KOG1270 Methyltransferases [Co 99.8 2.4E-18 5.3E-23 147.8 10.1 139 111-254 90-250 (282)
33 PRK11207 tellurite resistance 99.8 9.2E-18 2E-22 144.1 13.0 137 110-254 30-171 (197)
34 COG2230 Cfa Cyclopropane fatty 99.8 4.4E-18 9.6E-23 150.4 11.0 160 98-262 61-232 (283)
35 PF08003 Methyltransf_9: Prote 99.8 1.5E-17 3.3E-22 147.0 13.6 187 66-263 79-277 (315)
36 PRK06202 hypothetical protein; 99.7 3.6E-17 7.7E-22 144.3 15.4 144 109-255 59-224 (232)
37 KOG4300 Predicted methyltransf 99.7 3.4E-17 7.4E-22 135.6 12.6 143 112-255 78-234 (252)
38 TIGR02716 C20_methyl_CrtF C-20 99.7 9.5E-17 2.1E-21 147.4 16.7 148 101-252 141-305 (306)
39 TIGR00477 tehB tellurite resis 99.7 3E-17 6.6E-22 140.7 10.5 138 110-255 30-171 (195)
40 PLN02585 magnesium protoporphy 99.7 4.1E-16 8.9E-21 142.3 17.0 140 110-255 144-301 (315)
41 PRK00107 gidB 16S rRNA methylt 99.7 3.3E-16 7.2E-21 132.7 15.0 125 109-255 44-171 (187)
42 PRK05134 bifunctional 3-demeth 99.7 4.4E-16 9.5E-21 137.4 15.8 145 109-255 47-207 (233)
43 PRK14966 unknown domain/N5-glu 99.7 2.6E-17 5.7E-22 153.2 7.8 173 60-252 204-404 (423)
44 TIGR02021 BchM-ChlM magnesium 99.7 4.9E-16 1.1E-20 135.8 14.2 143 110-258 55-211 (219)
45 COG4106 Tam Trans-aconitate me 99.7 1.7E-16 3.8E-21 132.4 10.7 144 100-247 21-180 (257)
46 PRK11705 cyclopropane fatty ac 99.7 2.7E-16 5.9E-21 147.8 13.5 157 101-263 159-322 (383)
47 PF07021 MetW: Methionine bios 99.7 6.4E-16 1.4E-20 128.5 13.0 142 109-258 12-172 (193)
48 PRK12335 tellurite resistance 99.7 7.5E-16 1.6E-20 140.0 14.5 136 110-253 120-259 (287)
49 PRK08287 cobalt-precorrin-6Y C 99.7 1.9E-15 4E-20 128.9 15.8 140 94-255 16-158 (187)
50 TIGR02081 metW methionine bios 99.7 2.2E-15 4.7E-20 129.2 16.0 138 110-255 13-169 (194)
51 TIGR00536 hemK_fam HemK family 99.7 7.1E-16 1.5E-20 139.9 13.5 170 64-251 68-267 (284)
52 PRK01544 bifunctional N5-gluta 99.7 9.5E-17 2.1E-21 156.0 8.3 174 60-251 65-291 (506)
53 PLN02232 ubiquinone biosynthes 99.7 8.5E-16 1.8E-20 127.5 12.7 118 138-255 1-149 (160)
54 TIGR00138 gidB 16S rRNA methyl 99.7 1.1E-15 2.4E-20 129.2 13.4 124 110-255 42-171 (181)
55 TIGR01983 UbiG ubiquinone bios 99.7 1.8E-15 3.9E-20 132.6 15.1 144 110-255 45-205 (224)
56 TIGR03533 L3_gln_methyl protei 99.7 8.4E-16 1.8E-20 139.1 13.1 171 64-253 75-274 (284)
57 PF08242 Methyltransf_12: Meth 99.7 3E-17 6.6E-22 125.0 3.1 94 115-208 1-99 (99)
58 TIGR03587 Pse_Me-ase pseudamin 99.7 2.6E-15 5.6E-20 129.4 14.4 102 109-215 42-145 (204)
59 PF13649 Methyltransf_25: Meth 99.6 3.4E-16 7.5E-21 119.7 7.6 93 114-206 1-101 (101)
60 TIGR03534 RF_mod_PrmC protein- 99.6 2.5E-15 5.4E-20 133.9 13.8 166 68-253 47-241 (251)
61 PRK06922 hypothetical protein; 99.6 1.1E-15 2.3E-20 148.7 11.8 107 110-216 418-541 (677)
62 PRK09328 N5-glutamine S-adenos 99.6 5.1E-15 1.1E-19 133.8 15.1 168 66-252 65-261 (275)
63 COG4976 Predicted methyltransf 99.6 2.1E-16 4.5E-21 132.9 5.4 176 76-257 90-269 (287)
64 PRK04266 fibrillarin; Provisio 99.6 9.5E-15 2.1E-19 127.5 15.9 132 105-256 68-213 (226)
65 PRK00121 trmB tRNA (guanine-N( 99.6 1.7E-15 3.6E-20 130.6 11.0 124 110-249 40-177 (202)
66 TIGR03704 PrmC_rel_meth putati 99.6 4.9E-15 1.1E-19 131.7 13.7 173 63-252 39-239 (251)
67 TIGR00537 hemK_rel_arch HemK-r 99.6 1.8E-14 3.8E-19 121.9 16.5 126 110-255 19-167 (179)
68 smart00138 MeTrc Methyltransfe 99.6 2E-15 4.4E-20 135.2 11.2 103 110-212 99-242 (264)
69 PRK11805 N5-glutamine S-adenos 99.6 5.5E-15 1.2E-19 135.0 13.6 172 64-254 87-287 (307)
70 PLN02336 phosphoethanolamine N 99.6 3.3E-15 7.2E-20 145.3 13.0 139 110-252 37-181 (475)
71 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.3E-14 2.9E-19 125.6 14.6 137 110-254 34-188 (213)
72 PRK07580 Mg-protoporphyrin IX 99.6 1.2E-14 2.5E-19 128.0 14.2 143 110-258 63-219 (230)
73 PRK11088 rrmA 23S rRNA methylt 99.6 1.2E-14 2.6E-19 131.2 13.4 131 110-255 85-220 (272)
74 KOG2361 Predicted methyltransf 99.6 1E-14 2.2E-19 124.0 11.7 166 87-254 50-238 (264)
75 COG2890 HemK Methylase of poly 99.6 1.8E-14 4E-19 129.7 13.8 171 62-253 64-263 (280)
76 PF05401 NodS: Nodulation prot 99.6 3.9E-14 8.4E-19 118.1 13.9 134 110-254 43-180 (201)
77 TIGR02469 CbiT precorrin-6Y C5 99.6 3.7E-14 7.9E-19 112.2 13.1 110 99-212 9-122 (124)
78 TIGR00091 tRNA (guanine-N(7)-) 99.6 1E-14 2.2E-19 125.0 10.2 105 110-214 16-134 (194)
79 PF03848 TehB: Tellurite resis 99.6 1.1E-14 2.4E-19 122.8 10.0 136 110-253 30-169 (192)
80 PRK00377 cbiT cobalt-precorrin 99.6 6.2E-14 1.3E-18 120.5 14.1 141 93-254 24-170 (198)
81 PRK13944 protein-L-isoaspartat 99.6 1.8E-14 3.9E-19 124.5 10.3 108 97-211 60-172 (205)
82 COG2242 CobL Precorrin-6B meth 99.5 2.2E-13 4.8E-18 112.7 15.1 139 93-253 18-161 (187)
83 KOG1541 Predicted protein carb 99.5 2.6E-14 5.6E-19 119.7 9.6 162 75-254 14-188 (270)
84 PRK13255 thiopurine S-methyltr 99.5 1.1E-13 2.5E-18 120.2 14.1 137 110-254 37-191 (218)
85 PLN03075 nicotianamine synthas 99.5 6.9E-14 1.5E-18 125.3 12.4 102 110-212 123-233 (296)
86 PTZ00146 fibrillarin; Provisio 99.5 2.7E-13 5.8E-18 121.1 16.1 151 92-257 112-275 (293)
87 TIGR01177 conserved hypothetic 99.5 8.4E-14 1.8E-18 129.0 13.3 145 87-254 160-316 (329)
88 PRK14968 putative methyltransf 99.5 3.1E-13 6.6E-18 115.0 15.0 125 110-253 23-173 (188)
89 PRK11188 rrmJ 23S rRNA methylt 99.5 2.9E-13 6.3E-18 117.1 13.5 97 109-213 50-166 (209)
90 PRK14967 putative methyltransf 99.5 9E-13 1.9E-17 115.5 16.8 147 87-253 15-184 (223)
91 PRK00517 prmA ribosomal protei 99.5 3E-13 6.6E-18 120.5 13.3 123 109-255 118-240 (250)
92 COG2264 PrmA Ribosomal protein 99.5 3.5E-13 7.6E-18 120.4 13.6 125 109-255 161-290 (300)
93 PRK13942 protein-L-isoaspartat 99.5 2.9E-13 6.2E-18 117.6 12.3 110 95-211 62-175 (212)
94 PF05175 MTS: Methyltransferas 99.5 1.6E-13 3.5E-18 115.1 9.9 103 110-213 31-141 (170)
95 KOG1271 Methyltransferases [Ge 99.5 5.6E-13 1.2E-17 108.6 11.2 145 94-255 48-207 (227)
96 TIGR00080 pimt protein-L-isoas 99.5 5.6E-13 1.2E-17 116.1 12.2 108 97-211 65-176 (215)
97 PRK15001 SAM-dependent 23S rib 99.5 3.8E-13 8.3E-18 125.3 11.7 103 110-213 228-341 (378)
98 TIGR03438 probable methyltrans 99.5 1.4E-12 3E-17 119.3 15.2 103 109-211 62-176 (301)
99 TIGR00406 prmA ribosomal prote 99.5 9.1E-13 2E-17 119.7 13.8 123 110-255 159-285 (288)
100 PRK07402 precorrin-6B methylas 99.5 2.6E-12 5.6E-17 110.3 15.1 115 95-214 26-144 (196)
101 PF00891 Methyltransf_2: O-met 99.4 4.2E-13 9.2E-18 119.0 10.3 133 102-242 93-241 (241)
102 PLN02672 methionine S-methyltr 99.4 8.2E-13 1.8E-17 136.2 13.5 168 70-255 78-305 (1082)
103 PHA03411 putative methyltransf 99.4 2.4E-12 5.1E-17 113.8 14.0 126 110-248 64-209 (279)
104 PRK09489 rsmC 16S ribosomal RN 99.4 7.8E-13 1.7E-17 122.4 10.5 103 110-214 196-305 (342)
105 PRK14121 tRNA (guanine-N(7)-)- 99.4 1E-12 2.3E-17 121.9 10.9 105 110-214 122-237 (390)
106 PF06325 PrmA: Ribosomal prote 99.4 7.7E-13 1.7E-17 119.3 7.8 139 92-255 145-285 (295)
107 PF13659 Methyltransf_26: Meth 99.4 8.6E-13 1.9E-17 103.4 6.2 102 111-213 1-116 (117)
108 COG2519 GCD14 tRNA(1-methylade 99.4 6.7E-12 1.5E-16 108.5 12.2 131 102-255 87-222 (256)
109 PF05891 Methyltransf_PK: AdoM 99.4 2.4E-12 5.1E-17 109.3 8.9 143 110-255 55-203 (218)
110 PRK13256 thiopurine S-methyltr 99.4 1.7E-11 3.8E-16 106.2 14.5 132 110-251 43-195 (226)
111 COG4123 Predicted O-methyltran 99.4 9.9E-12 2.1E-16 108.3 12.8 133 110-259 44-200 (248)
112 PRK00312 pcm protein-L-isoaspa 99.4 8.4E-12 1.8E-16 108.5 12.3 110 95-213 64-176 (212)
113 TIGR00438 rrmJ cell division p 99.4 2.1E-11 4.4E-16 104.0 14.1 96 109-212 31-146 (188)
114 cd02440 AdoMet_MTases S-adenos 99.3 1.1E-11 2.3E-16 93.7 10.9 98 113-211 1-103 (107)
115 COG2518 Pcm Protein-L-isoaspar 99.3 1.2E-11 2.6E-16 104.6 11.1 108 97-213 60-170 (209)
116 KOG2904 Predicted methyltransf 99.3 5.5E-12 1.2E-16 109.2 8.5 148 65-213 101-286 (328)
117 PRK01581 speE spermidine synth 99.3 7.5E-11 1.6E-15 108.2 15.5 137 110-258 150-302 (374)
118 PRK04457 spermidine synthase; 99.3 2.3E-11 4.9E-16 108.9 11.6 105 109-213 65-178 (262)
119 PF08704 GCD14: tRNA methyltra 99.3 3.7E-11 8.1E-16 105.6 11.7 133 101-255 32-173 (247)
120 PF05724 TPMT: Thiopurine S-me 99.3 1.1E-10 2.5E-15 101.3 14.5 138 109-254 36-191 (218)
121 PRK10901 16S rRNA methyltransf 99.3 9.2E-11 2E-15 112.4 15.2 129 109-250 243-398 (427)
122 PRK13943 protein-L-isoaspartat 99.3 2.3E-11 4.9E-16 111.4 10.5 110 95-211 66-179 (322)
123 COG2813 RsmC 16S RNA G1207 met 99.3 3.7E-11 7.9E-16 106.9 11.0 110 102-214 151-268 (300)
124 PF05219 DREV: DREV methyltran 99.3 9.8E-11 2.1E-15 101.8 13.3 138 110-255 94-242 (265)
125 PRK00811 spermidine synthase; 99.3 4.4E-11 9.6E-16 108.3 11.4 103 110-212 76-191 (283)
126 PRK14901 16S rRNA methyltransf 99.3 9E-11 2E-15 112.7 13.9 128 109-249 251-409 (434)
127 KOG3010 Methyltransferase [Gen 99.2 2.3E-10 4.9E-15 97.8 14.5 99 111-212 34-137 (261)
128 PF06080 DUF938: Protein of un 99.2 6.9E-11 1.5E-15 100.0 11.2 144 112-255 27-194 (204)
129 PF05148 Methyltransf_8: Hypot 99.2 7.6E-11 1.7E-15 99.2 11.3 117 109-255 71-187 (219)
130 TIGR00563 rsmB ribosomal RNA s 99.2 1.5E-10 3.3E-15 110.9 14.2 108 109-216 237-372 (426)
131 PF01135 PCMT: Protein-L-isoas 99.2 4.3E-11 9.2E-16 103.1 9.0 110 95-211 58-171 (209)
132 KOG2899 Predicted methyltransf 99.2 6.4E-10 1.4E-14 94.9 15.6 144 110-253 58-257 (288)
133 PRK03612 spermidine synthase; 99.2 1.9E-10 4.2E-15 112.6 13.6 126 110-248 297-439 (521)
134 PRK14903 16S rRNA methyltransf 99.2 2.5E-10 5.5E-15 109.2 13.8 108 109-216 236-370 (431)
135 smart00650 rADc Ribosomal RNA 99.2 2.8E-10 6E-15 95.3 12.2 105 102-212 6-113 (169)
136 COG1041 Predicted DNA modifica 99.2 4.1E-10 8.9E-15 102.1 13.9 143 88-254 176-331 (347)
137 PRK14904 16S rRNA methyltransf 99.2 1.6E-10 3.5E-15 111.3 11.9 107 109-216 249-381 (445)
138 PRK14902 16S rRNA methyltransf 99.2 3.6E-10 7.7E-15 109.0 14.3 129 109-251 249-406 (444)
139 COG2521 Predicted archaeal met 99.2 1.2E-10 2.5E-15 98.8 8.3 135 109-254 133-278 (287)
140 TIGR00446 nop2p NOL1/NOP2/sun 99.1 4.9E-10 1.1E-14 100.6 12.4 108 109-216 70-203 (264)
141 KOG3045 Predicted RNA methylas 99.1 3.2E-10 6.9E-15 97.6 10.3 124 102-257 172-295 (325)
142 PF12147 Methyltransf_20: Puta 99.1 9.3E-10 2E-14 96.9 13.2 144 109-252 134-297 (311)
143 KOG3178 Hydroxyindole-O-methyl 99.1 8.4E-10 1.8E-14 99.8 13.0 140 110-255 177-332 (342)
144 KOG2940 Predicted methyltransf 99.1 2.2E-10 4.7E-15 96.9 8.1 142 109-251 71-225 (325)
145 PF03291 Pox_MCEL: mRNA cappin 99.1 3E-10 6.5E-15 104.5 9.6 146 110-256 62-270 (331)
146 PF02390 Methyltransf_4: Putat 99.1 2.3E-10 5E-15 97.8 8.0 103 112-214 19-135 (195)
147 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.6E-09 3.5E-14 104.4 14.4 138 94-255 282-426 (443)
148 TIGR00417 speE spermidine synt 99.1 8.7E-10 1.9E-14 99.3 11.1 103 110-212 72-186 (270)
149 PLN02366 spermidine synthase 99.1 1E-09 2.2E-14 100.0 11.4 104 109-212 90-206 (308)
150 PHA03412 putative methyltransf 99.1 1.8E-09 3.9E-14 93.5 11.9 133 110-248 49-197 (241)
151 PRK11783 rlmL 23S rRNA m(2)G24 99.1 6E-10 1.3E-14 112.9 10.2 128 110-255 538-682 (702)
152 PLN02781 Probable caffeoyl-CoA 99.0 8.1E-10 1.8E-14 97.3 9.2 102 110-214 68-180 (234)
153 KOG1499 Protein arginine N-met 99.0 7.1E-10 1.5E-14 100.1 7.7 124 83-209 34-164 (346)
154 PRK15128 23S rRNA m(5)C1962 me 99.0 1.1E-09 2.5E-14 103.3 8.9 104 110-214 220-341 (396)
155 PF01739 CheR: CheR methyltran 99.0 1.1E-09 2.4E-14 93.3 8.1 103 110-212 31-175 (196)
156 COG1352 CheR Methylase of chem 99.0 5.1E-09 1.1E-13 93.1 12.5 137 75-211 59-240 (268)
157 PRK10611 chemotaxis methyltran 99.0 4.5E-09 9.7E-14 94.6 12.0 101 111-211 116-261 (287)
158 PF01170 UPF0020: Putative RNA 99.0 3.2E-09 7E-14 89.6 9.7 150 84-255 3-173 (179)
159 COG0220 Predicted S-adenosylme 98.9 2.8E-09 6E-14 92.7 8.5 103 112-214 50-166 (227)
160 PRK11727 23S rRNA mA1618 methy 98.9 1E-08 2.2E-13 93.7 12.4 145 110-255 114-294 (321)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.9 7.3E-09 1.6E-13 88.6 10.7 119 93-213 36-160 (199)
162 COG4122 Predicted O-methyltran 98.9 6.3E-09 1.4E-13 89.5 9.7 104 110-216 59-170 (219)
163 PRK00274 ksgA 16S ribosomal RN 98.9 4.7E-09 1E-13 94.6 9.3 85 96-183 29-113 (272)
164 PRK03522 rumB 23S rRNA methylu 98.9 1.4E-08 3E-13 93.6 11.8 122 110-255 173-298 (315)
165 KOG1975 mRNA cap methyltransfe 98.9 4E-09 8.7E-14 93.6 7.5 147 109-256 116-320 (389)
166 TIGR00479 rumA 23S rRNA (uraci 98.9 1.8E-08 4E-13 96.9 12.4 137 96-255 279-422 (431)
167 KOG1500 Protein arginine N-met 98.9 3.5E-08 7.6E-13 88.1 13.0 135 71-210 140-280 (517)
168 PF11968 DUF3321: Putative met 98.9 4E-08 8.6E-13 83.5 12.7 121 112-256 53-184 (219)
169 PF07942 N2227: N2227-like pro 98.9 8.3E-08 1.8E-12 85.2 15.2 141 110-253 56-242 (270)
170 PRK14896 ksgA 16S ribosomal RN 98.9 1.6E-08 3.5E-13 90.5 10.1 86 95-185 15-101 (258)
171 PF10294 Methyltransf_16: Puta 98.8 1E-08 2.3E-13 86.0 8.1 105 109-214 44-158 (173)
172 COG2263 Predicted RNA methylas 98.8 1.7E-08 3.7E-13 83.5 9.0 120 110-254 45-169 (198)
173 PF01596 Methyltransf_3: O-met 98.8 9.9E-09 2.1E-13 88.2 7.1 104 110-216 45-159 (205)
174 TIGR00478 tly hemolysin TlyA f 98.8 5.3E-08 1.2E-12 84.9 11.7 134 109-255 74-219 (228)
175 PLN02476 O-methyltransferase 98.8 1.5E-08 3.3E-13 90.5 8.3 102 110-214 118-230 (278)
176 KOG1661 Protein-L-isoaspartate 98.8 2.6E-08 5.6E-13 83.5 8.4 97 109-211 81-192 (237)
177 PRK01544 bifunctional N5-gluta 98.8 3E-08 6.5E-13 96.8 10.0 105 110-214 347-464 (506)
178 PF03141 Methyltransf_29: Puta 98.8 6.7E-09 1.4E-13 98.0 4.5 99 112-216 119-223 (506)
179 PLN02823 spermine synthase 98.7 9.4E-08 2E-12 88.2 11.6 101 110-211 103-219 (336)
180 TIGR00755 ksgA dimethyladenosi 98.7 1.9E-07 4.2E-12 83.3 12.4 84 95-183 15-102 (253)
181 PF02527 GidB: rRNA small subu 98.7 2.6E-07 5.6E-12 78.0 12.2 125 112-255 50-177 (184)
182 PTZ00338 dimethyladenosine tra 98.7 5.6E-08 1.2E-12 88.3 8.5 90 95-190 22-115 (294)
183 TIGR02085 meth_trns_rumB 23S r 98.7 1.4E-07 3E-12 89.0 11.3 122 110-255 233-358 (374)
184 KOG3191 Predicted N6-DNA-methy 98.7 3.5E-07 7.7E-12 75.0 11.9 126 111-253 44-193 (209)
185 COG3963 Phospholipid N-methylt 98.7 7.6E-07 1.7E-11 72.1 12.9 117 95-214 34-158 (194)
186 PRK04148 hypothetical protein; 98.6 1.9E-07 4.1E-12 74.0 8.9 68 110-183 16-85 (134)
187 COG1092 Predicted SAM-dependen 98.6 1.3E-07 2.8E-12 88.4 8.9 104 110-215 217-339 (393)
188 TIGR00095 RNA methyltransferas 98.6 2.5E-07 5.4E-12 78.7 9.8 102 110-213 49-160 (189)
189 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 6.7E-08 1.5E-12 85.3 6.5 141 110-252 56-238 (256)
190 KOG1269 SAM-dependent methyltr 98.6 7.1E-08 1.5E-12 89.5 6.4 143 109-252 109-266 (364)
191 PLN02589 caffeoyl-CoA O-methyl 98.6 1.5E-07 3.2E-12 83.1 7.7 101 110-213 79-191 (247)
192 KOG1331 Predicted methyltransf 98.6 7.1E-08 1.5E-12 84.8 5.3 96 109-212 44-143 (293)
193 KOG2915 tRNA(1-methyladenosine 98.6 9.2E-07 2E-11 77.1 11.8 132 102-255 98-237 (314)
194 PRK00536 speE spermidine synth 98.6 7.6E-07 1.6E-11 79.1 11.3 123 109-254 71-200 (262)
195 COG0421 SpeE Spermidine syntha 98.5 7.8E-07 1.7E-11 79.9 11.2 102 111-212 77-190 (282)
196 KOG3987 Uncharacterized conser 98.5 3.9E-08 8.4E-13 82.1 2.6 154 94-255 94-262 (288)
197 PRK04338 N(2),N(2)-dimethylgua 98.5 2.6E-07 5.7E-12 86.9 8.0 98 111-212 58-158 (382)
198 PF05185 PRMT5: PRMT5 arginine 98.5 6E-07 1.3E-11 86.1 10.4 98 111-209 187-294 (448)
199 PRK11933 yebU rRNA (cytosine-C 98.5 2.3E-06 4.9E-11 82.5 13.3 109 109-217 112-247 (470)
200 PF02475 Met_10: Met-10+ like- 98.5 2.6E-07 5.7E-12 78.9 5.8 96 109-209 100-199 (200)
201 PF09243 Rsm22: Mitochondrial 98.5 2E-06 4.3E-11 77.6 11.6 124 110-249 33-164 (274)
202 COG0500 SmtA SAM-dependent met 98.5 3.6E-06 7.9E-11 68.1 12.2 101 114-216 52-159 (257)
203 PF10672 Methyltrans_SAM: S-ad 98.4 6.8E-07 1.5E-11 80.4 7.4 104 110-214 123-240 (286)
204 PF01564 Spermine_synth: Sperm 98.4 7.9E-07 1.7E-11 78.8 7.5 103 110-212 76-191 (246)
205 COG0030 KsgA Dimethyladenosine 98.4 2.3E-06 5E-11 75.5 10.0 92 95-190 16-109 (259)
206 PRK00050 16S rRNA m(4)C1402 me 98.4 9.1E-07 2E-11 80.0 7.6 87 97-184 7-99 (296)
207 COG0357 GidB Predicted S-adeno 98.4 6.3E-06 1.4E-10 70.8 12.3 129 111-257 68-199 (215)
208 TIGR02143 trmA_only tRNA (urac 98.4 8E-06 1.7E-10 76.4 13.7 134 95-255 184-336 (353)
209 PRK05031 tRNA (uracil-5-)-meth 98.4 7.7E-06 1.7E-10 76.8 13.6 134 95-255 193-345 (362)
210 KOG3420 Predicted RNA methylas 98.3 7E-07 1.5E-11 70.5 5.0 76 110-186 48-125 (185)
211 PF04672 Methyltransf_19: S-ad 98.3 5.3E-06 1.2E-10 73.3 10.7 137 112-250 70-233 (267)
212 KOG3201 Uncharacterized conser 98.3 5.4E-07 1.2E-11 72.5 3.7 146 95-256 15-169 (201)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.3 5.6E-06 1.2E-10 84.3 12.1 130 84-213 164-348 (702)
214 PF03602 Cons_hypoth95: Conser 98.3 3.6E-07 7.8E-12 77.2 2.9 121 92-214 23-155 (183)
215 KOG0820 Ribosomal RNA adenine 98.3 4.9E-06 1.1E-10 72.7 9.4 83 95-182 44-130 (315)
216 PF01728 FtsJ: FtsJ-like methy 98.2 1.3E-06 2.7E-11 73.9 4.9 97 110-214 23-141 (181)
217 COG0144 Sun tRNA and rRNA cyto 98.2 2.5E-05 5.5E-10 73.0 13.9 130 109-251 155-315 (355)
218 PF01269 Fibrillarin: Fibrilla 98.2 6.1E-05 1.3E-09 64.5 14.1 144 93-256 54-215 (229)
219 KOG1709 Guanidinoacetate methy 98.2 1.1E-05 2.4E-10 68.1 9.3 104 109-213 100-207 (271)
220 KOG1663 O-methyltransferase [S 98.2 8.4E-06 1.8E-10 69.7 8.8 101 110-214 73-185 (237)
221 COG2520 Predicted methyltransf 98.2 1.4E-05 3E-10 73.4 10.2 124 109-247 187-314 (341)
222 TIGR03439 methyl_EasF probable 98.2 3E-05 6.6E-10 71.0 12.1 103 109-211 75-196 (319)
223 COG4798 Predicted methyltransf 98.1 2.5E-05 5.4E-10 65.0 9.8 149 102-255 41-207 (238)
224 PF08123 DOT1: Histone methyla 98.1 3.9E-06 8.4E-11 72.1 5.3 116 96-213 29-159 (205)
225 PF04816 DUF633: Family of unk 98.1 1.8E-05 3.9E-10 68.0 9.4 121 114-255 1-126 (205)
226 COG2265 TrmA SAM-dependent met 98.1 2.5E-05 5.3E-10 74.6 10.6 139 94-255 278-422 (432)
227 COG4262 Predicted spermidine s 98.1 7E-05 1.5E-09 68.1 12.8 130 109-256 288-439 (508)
228 KOG2352 Predicted spermine/spe 98.1 2.4E-05 5.2E-10 74.0 10.3 100 113-213 51-162 (482)
229 COG0116 Predicted N6-adenine-s 98.1 3.6E-05 7.7E-10 71.3 11.2 127 86-213 168-345 (381)
230 COG0742 N6-adenine-specific me 98.1 4E-05 8.7E-10 64.2 9.9 122 92-214 24-156 (187)
231 COG0293 FtsJ 23S rRNA methylas 98.0 2.4E-05 5.2E-10 66.5 8.3 104 103-214 38-161 (205)
232 COG3897 Predicted methyltransf 98.0 3.9E-05 8.4E-10 64.0 9.0 114 97-216 67-183 (218)
233 COG1889 NOP1 Fibrillarin-like 98.0 0.00035 7.5E-09 58.7 14.3 150 93-256 57-217 (231)
234 PF02384 N6_Mtase: N-6 DNA Met 98.0 2.4E-05 5.1E-10 72.1 8.2 141 109-261 45-220 (311)
235 TIGR00308 TRM1 tRNA(guanine-26 98.0 3.1E-05 6.8E-10 72.6 9.0 98 111-212 45-147 (374)
236 TIGR02987 met_A_Alw26 type II 98.0 3.5E-05 7.6E-10 76.1 9.7 73 110-182 31-119 (524)
237 PRK11760 putative 23S rRNA C24 98.0 5.3E-05 1.1E-09 69.2 10.0 87 109-205 210-296 (357)
238 PF00398 RrnaAD: Ribosomal RNA 98.0 4.3E-05 9.3E-10 68.6 9.4 105 94-204 15-123 (262)
239 COG4627 Uncharacterized protei 98.0 5.1E-06 1.1E-10 66.4 3.0 82 113-214 5-88 (185)
240 COG1189 Predicted rRNA methyla 97.9 9.6E-05 2.1E-09 63.8 10.2 147 102-255 71-226 (245)
241 PF09445 Methyltransf_15: RNA 97.9 1.5E-05 3.2E-10 65.6 4.4 68 112-181 1-75 (163)
242 KOG3115 Methyltransferase-like 97.8 6.8E-05 1.5E-09 62.8 7.3 102 111-215 61-186 (249)
243 PF03059 NAS: Nicotianamine sy 97.8 0.00017 3.6E-09 64.5 9.6 101 111-211 121-229 (276)
244 KOG4589 Cell division protein 97.8 0.00012 2.5E-09 60.7 7.5 100 106-213 65-185 (232)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00014 3.1E-09 65.8 8.8 129 109-250 84-245 (283)
246 PF05958 tRNA_U5-meth_tr: tRNA 97.7 4.5E-05 9.7E-10 71.4 5.7 71 94-168 182-255 (352)
247 COG4076 Predicted RNA methylas 97.6 0.00017 3.8E-09 59.7 6.8 97 111-211 33-134 (252)
248 KOG2730 Methylase [General fun 97.6 0.00015 3.2E-09 61.6 6.4 95 110-206 94-196 (263)
249 KOG2798 Putative trehalase [Ca 97.6 0.00068 1.5E-08 60.7 10.6 144 110-255 150-339 (369)
250 PLN02668 indole-3-acetate carb 97.6 0.0012 2.7E-08 61.8 12.5 146 110-255 63-311 (386)
251 PF13679 Methyltransf_32: Meth 97.6 0.00039 8.5E-09 56.2 8.2 94 109-210 24-129 (141)
252 TIGR01444 fkbM_fam methyltrans 97.5 0.00017 3.7E-09 58.2 5.6 55 113-167 1-58 (143)
253 PF13578 Methyltransf_24: Meth 97.5 1.9E-05 4.1E-10 60.5 -0.2 97 115-212 1-105 (106)
254 COG2384 Predicted SAM-dependen 97.5 0.0025 5.4E-08 54.5 12.0 127 110-256 16-146 (226)
255 TIGR00006 S-adenosyl-methyltra 97.4 0.00053 1.1E-08 62.3 8.0 85 97-182 8-99 (305)
256 COG0275 Predicted S-adenosylme 97.4 0.0018 3.8E-08 58.1 10.5 84 97-181 11-102 (314)
257 KOG2187 tRNA uracil-5-methyltr 97.3 0.00025 5.4E-09 67.5 4.5 58 109-168 382-442 (534)
258 PF04989 CmcI: Cephalosporin h 97.3 0.00061 1.3E-08 58.1 6.3 135 110-245 32-181 (206)
259 COG5459 Predicted rRNA methyla 97.2 0.0012 2.6E-08 60.0 7.8 108 110-218 113-231 (484)
260 PF03141 Methyltransf_29: Puta 97.1 0.00044 9.4E-09 66.0 3.7 118 111-251 366-489 (506)
261 COG1064 AdhP Zn-dependent alco 97.1 0.0065 1.4E-07 55.9 11.1 95 109-214 165-261 (339)
262 PF03492 Methyltransf_7: SAM d 97.0 0.0047 1E-07 57.4 9.7 146 110-255 16-255 (334)
263 PRK10742 putative methyltransf 96.9 0.0025 5.4E-08 56.0 6.7 77 110-188 86-177 (250)
264 PF07091 FmrO: Ribosomal RNA m 96.9 0.0036 7.8E-08 54.8 7.4 147 93-249 91-240 (251)
265 PF06962 rRNA_methylase: Putat 96.9 0.0044 9.6E-08 49.5 7.0 109 136-255 1-127 (140)
266 PRK09424 pntA NAD(P) transhydr 96.6 0.027 5.9E-07 55.0 12.0 99 110-213 164-286 (509)
267 PF05971 Methyltransf_10: Prot 96.6 0.0038 8.3E-08 56.5 5.7 142 111-255 103-284 (299)
268 KOG1122 tRNA and rRNA cytosine 96.6 0.0065 1.4E-07 56.7 7.0 106 109-215 240-374 (460)
269 PF01795 Methyltransf_5: MraW 96.6 0.005 1.1E-07 56.0 6.0 83 98-181 9-99 (310)
270 PF01861 DUF43: Protein of unk 96.4 0.061 1.3E-06 47.0 11.6 131 110-253 44-178 (243)
271 PF10354 DUF2431: Domain of un 96.4 0.081 1.8E-06 43.9 12.0 134 116-263 2-162 (166)
272 PF06859 Bin3: Bicoid-interact 96.4 0.002 4.4E-08 48.9 1.9 81 175-255 1-94 (110)
273 PRK09880 L-idonate 5-dehydroge 96.3 0.022 4.7E-07 53.1 9.1 98 110-213 169-267 (343)
274 KOG2793 Putative N2,N2-dimethy 96.3 0.013 2.9E-07 51.5 7.1 104 110-215 86-202 (248)
275 COG1063 Tdh Threonine dehydrog 96.3 0.028 6.1E-07 52.6 9.6 100 110-215 168-272 (350)
276 PF11599 AviRa: RRNA methyltra 96.3 0.036 7.7E-07 47.3 8.9 103 110-212 51-214 (246)
277 cd08283 FDH_like_1 Glutathione 96.2 0.025 5.4E-07 53.7 9.1 102 109-213 183-307 (386)
278 PRK01747 mnmC bifunctional tRN 96.2 0.032 7E-07 56.9 10.4 126 110-255 57-229 (662)
279 KOG2198 tRNA cytosine-5-methyl 96.2 0.12 2.6E-06 47.8 12.7 109 109-217 154-301 (375)
280 PHA01634 hypothetical protein 96.1 0.033 7.1E-07 43.5 7.3 71 110-181 28-98 (156)
281 KOG0024 Sorbitol dehydrogenase 96.0 0.051 1.1E-06 49.3 9.1 101 109-216 168-277 (354)
282 PF03269 DUF268: Caenorhabditi 96.0 0.007 1.5E-07 49.2 3.2 131 111-254 2-146 (177)
283 TIGR00027 mthyl_TIGR00027 meth 95.8 0.21 4.4E-06 44.8 12.2 138 112-251 83-248 (260)
284 cd00315 Cyt_C5_DNA_methylase C 95.7 0.39 8.4E-06 43.4 13.9 124 113-251 2-141 (275)
285 COG4301 Uncharacterized conser 95.7 0.59 1.3E-05 41.0 13.9 101 110-211 78-192 (321)
286 KOG1596 Fibrillarin and relate 95.6 0.056 1.2E-06 46.9 7.5 111 94-211 138-260 (317)
287 KOG1099 SAM-dependent methyltr 95.6 0.023 5E-07 48.9 5.0 93 110-210 41-161 (294)
288 COG1867 TRM1 N2,N2-dimethylgua 95.5 0.041 9E-07 50.8 6.9 98 111-212 53-154 (380)
289 KOG1562 Spermidine synthase [A 95.5 0.033 7.2E-07 49.8 5.9 105 110-214 121-238 (337)
290 COG0286 HsdM Type I restrictio 95.3 0.12 2.7E-06 50.5 9.9 105 109-213 185-327 (489)
291 KOG4058 Uncharacterized conser 95.3 0.13 2.8E-06 41.3 8.0 117 93-216 56-176 (199)
292 TIGR00561 pntA NAD(P) transhyd 95.2 0.1 2.2E-06 51.0 8.9 97 110-211 163-283 (511)
293 PRK11524 putative methyltransf 95.1 0.065 1.4E-06 48.7 6.9 62 90-155 190-251 (284)
294 PF01555 N6_N4_Mtase: DNA meth 95.0 0.053 1.2E-06 46.9 5.9 59 90-152 173-231 (231)
295 PF02636 Methyltransf_28: Puta 95.0 0.085 1.8E-06 47.0 7.1 74 111-189 19-109 (252)
296 PF11312 DUF3115: Protein of u 95.0 0.064 1.4E-06 48.6 6.2 105 110-214 86-244 (315)
297 KOG2920 Predicted methyltransf 95.0 0.028 6.1E-07 50.1 3.9 104 107-211 113-233 (282)
298 PF04445 SAM_MT: Putative SAM- 94.8 0.085 1.9E-06 46.1 6.5 74 112-187 77-163 (234)
299 KOG1253 tRNA methyltransferase 94.7 0.035 7.6E-07 53.0 4.1 101 109-213 108-217 (525)
300 KOG0822 Protein kinase inhibit 94.7 0.12 2.7E-06 49.8 7.7 115 95-210 350-476 (649)
301 PRK13699 putative methylase; P 94.6 0.13 2.7E-06 45.2 7.0 62 90-155 145-206 (227)
302 KOG2671 Putative RNA methylase 94.5 0.11 2.3E-06 47.6 6.4 103 109-213 207-355 (421)
303 cd08254 hydroxyacyl_CoA_DH 6-h 94.5 0.56 1.2E-05 43.1 11.7 94 109-213 164-264 (338)
304 cd08230 glucose_DH Glucose deh 94.4 0.29 6.3E-06 45.7 9.6 92 110-213 172-270 (355)
305 PRK13699 putative methylase; P 94.3 0.12 2.7E-06 45.2 6.2 77 160-253 3-96 (227)
306 cd08237 ribitol-5-phosphate_DH 94.3 0.38 8.2E-06 44.7 10.0 94 109-213 162-257 (341)
307 PF02005 TRM: N2,N2-dimethylgu 94.3 0.12 2.7E-06 48.7 6.6 99 111-213 50-155 (377)
308 PF05430 Methyltransf_30: S-ad 94.1 0.07 1.5E-06 42.0 3.9 77 159-256 33-114 (124)
309 COG3510 CmcI Cephalosporin hyd 94.1 0.2 4.4E-06 42.0 6.7 106 110-217 69-185 (237)
310 PF00107 ADH_zinc_N: Zinc-bind 94.1 0.26 5.6E-06 38.6 7.3 86 120-215 1-92 (130)
311 PF07757 AdoMet_MTase: Predict 94.0 0.046 1E-06 41.4 2.6 31 110-142 58-88 (112)
312 TIGR01202 bchC 2-desacetyl-2-h 93.5 0.5 1.1E-05 43.2 9.1 88 110-213 144-232 (308)
313 cd08232 idonate-5-DH L-idonate 93.5 0.53 1.2E-05 43.4 9.4 93 110-212 165-262 (339)
314 TIGR02822 adh_fam_2 zinc-bindi 93.1 0.97 2.1E-05 41.8 10.5 91 109-213 164-255 (329)
315 cd05188 MDR Medium chain reduc 93.1 0.71 1.5E-05 40.6 9.2 93 109-213 133-233 (271)
316 TIGR03451 mycoS_dep_FDH mycoth 92.7 0.51 1.1E-05 44.1 8.1 95 109-213 175-277 (358)
317 COG0686 Ald Alanine dehydrogen 92.7 0.38 8.2E-06 43.6 6.6 98 111-210 168-266 (371)
318 KOG1501 Arginine N-methyltrans 92.5 0.24 5.2E-06 46.8 5.4 91 112-203 68-165 (636)
319 cd08281 liver_ADH_like1 Zinc-d 92.4 0.48 1E-05 44.5 7.6 98 109-213 190-291 (371)
320 PF03514 GRAS: GRAS domain fam 92.3 1.2 2.5E-05 42.2 9.9 102 110-211 110-243 (374)
321 KOG2539 Mitochondrial/chloropl 92.2 0.69 1.5E-05 44.2 8.0 107 110-216 200-319 (491)
322 COG1565 Uncharacterized conser 92.1 0.32 7E-06 45.0 5.6 46 110-155 77-130 (370)
323 PF02254 TrkA_N: TrkA-N domain 92.0 2.8 6.1E-05 31.9 10.2 102 119-249 4-113 (116)
324 TIGR03366 HpnZ_proposed putati 91.9 0.61 1.3E-05 42.0 7.3 95 110-213 120-219 (280)
325 COG0270 Dcm Site-specific DNA 91.8 1.9 4.2E-05 39.9 10.6 122 111-247 3-141 (328)
326 COG3315 O-Methyltransferase in 91.6 2.2 4.7E-05 39.0 10.5 140 111-252 93-263 (297)
327 cd08239 THR_DH_like L-threonin 91.2 0.89 1.9E-05 42.0 7.8 97 110-213 163-263 (339)
328 TIGR03201 dearomat_had 6-hydro 91.1 1.3 2.9E-05 41.1 8.9 99 109-214 165-274 (349)
329 PRK10309 galactitol-1-phosphat 91.0 1.1 2.3E-05 41.7 8.2 95 109-213 159-261 (347)
330 KOG1227 Putative methyltransfe 91.0 0.14 3.1E-06 45.9 2.1 93 109-207 193-290 (351)
331 PLN02740 Alcohol dehydrogenase 90.7 1.3 2.9E-05 41.8 8.6 96 109-213 197-301 (381)
332 PLN02827 Alcohol dehydrogenase 90.7 0.91 2E-05 42.9 7.4 96 109-213 192-296 (378)
333 KOG2651 rRNA adenine N-6-methy 90.4 0.59 1.3E-05 43.5 5.5 42 110-152 153-194 (476)
334 cd08255 2-desacetyl-2-hydroxye 90.2 2.7 5.9E-05 37.4 9.8 93 109-212 96-190 (277)
335 COG3129 Predicted SAM-dependen 90.2 0.86 1.9E-05 39.6 6.0 80 109-188 77-166 (292)
336 cd08245 CAD Cinnamyl alcohol d 89.8 2.8 6E-05 38.4 9.8 94 109-212 161-256 (330)
337 KOG2078 tRNA modification enzy 89.4 0.18 4E-06 47.4 1.5 58 107-166 246-308 (495)
338 PLN02586 probable cinnamyl alc 89.2 2.3 5E-05 39.9 8.8 95 109-213 182-279 (360)
339 TIGR00518 alaDH alanine dehydr 89.1 0.98 2.1E-05 42.7 6.2 100 110-211 166-266 (370)
340 cd08234 threonine_DH_like L-th 88.9 5.3 0.00012 36.5 11.0 94 109-212 158-257 (334)
341 COG0604 Qor NADPH:quinone redu 88.4 1.8 4E-05 40.0 7.5 99 109-215 141-244 (326)
342 cd08261 Zn_ADH7 Alcohol dehydr 88.3 2.3 4.9E-05 39.2 8.0 97 109-212 158-258 (337)
343 KOG2352 Predicted spermine/spe 88.1 0.99 2.1E-05 43.4 5.4 106 110-216 295-420 (482)
344 PLN03154 putative allyl alcoho 88.1 2.6 5.6E-05 39.3 8.3 97 109-213 157-259 (348)
345 cd08285 NADP_ADH NADP(H)-depen 88.0 2.5 5.5E-05 39.2 8.2 96 109-213 165-267 (351)
346 TIGR02819 fdhA_non_GSH formald 87.9 7.3 0.00016 37.0 11.4 102 109-213 184-300 (393)
347 PF11899 DUF3419: Protein of u 87.8 0.76 1.7E-05 43.4 4.5 70 145-216 265-338 (380)
348 cd05278 FDH_like Formaldehyde 87.8 2.8 6E-05 38.7 8.4 98 109-212 166-267 (347)
349 cd08294 leukotriene_B4_DH_like 87.7 2.6 5.7E-05 38.5 8.1 93 109-212 142-241 (329)
350 PRK11524 putative methyltransf 87.7 0.53 1.1E-05 42.7 3.3 55 158-212 8-80 (284)
351 TIGR02825 B4_12hDH leukotriene 87.6 2.9 6.2E-05 38.3 8.3 95 109-212 137-237 (325)
352 cd00401 AdoHcyase S-adenosyl-L 87.6 6 0.00013 37.9 10.4 99 99-213 190-290 (413)
353 KOG3924 Putative protein methy 87.1 0.72 1.6E-05 43.1 3.8 121 94-216 177-312 (419)
354 KOG1269 SAM-dependent methyltr 87.0 2.3 5E-05 39.9 7.2 103 110-215 180-316 (364)
355 PF05206 TRM13: Methyltransfer 86.7 1.4 3.1E-05 39.3 5.4 62 109-170 17-86 (259)
356 PLN02514 cinnamyl-alcohol dehy 86.5 6.4 0.00014 36.7 10.1 96 109-213 179-276 (357)
357 TIGR02818 adh_III_F_hyde S-(hy 85.7 4.7 0.0001 37.8 8.7 99 109-213 184-288 (368)
358 PF03686 UPF0146: Uncharacteri 85.6 1.2 2.6E-05 34.9 3.8 88 110-212 13-102 (127)
359 cd05285 sorbitol_DH Sorbitol d 85.5 5.1 0.00011 37.0 8.8 94 109-212 161-265 (343)
360 cd08277 liver_alcohol_DH_like 85.2 4.5 9.7E-05 37.9 8.3 99 109-213 183-287 (365)
361 cd08236 sugar_DH NAD(P)-depend 84.9 4.6 0.0001 37.2 8.2 94 109-212 158-258 (343)
362 COG1255 Uncharacterized protei 84.9 4.7 0.0001 31.0 6.5 85 111-211 14-101 (129)
363 KOG2918 Carboxymethyl transfer 84.8 28 0.00062 31.8 12.5 147 110-257 87-281 (335)
364 cd08295 double_bond_reductase_ 84.7 5.8 0.00013 36.6 8.7 96 109-212 150-251 (338)
365 PTZ00357 methyltransferase; Pr 84.6 3.6 7.7E-05 41.6 7.3 95 112-207 702-830 (1072)
366 cd08242 MDR_like Medium chain 84.6 10 0.00022 34.5 10.2 91 109-212 154-245 (319)
367 cd08300 alcohol_DH_class_III c 84.6 4.9 0.00011 37.7 8.3 98 109-213 185-289 (368)
368 PLN02178 cinnamyl-alcohol dehy 83.7 5.8 0.00012 37.4 8.4 94 109-213 177-274 (375)
369 PLN02494 adenosylhomocysteinas 83.6 5.5 0.00012 38.7 8.1 102 98-214 241-343 (477)
370 PRK08267 short chain dehydroge 83.4 13 0.00027 32.7 10.0 73 112-186 2-88 (260)
371 cd08233 butanediol_DH_like (2R 83.2 5.7 0.00012 36.8 8.1 98 109-213 171-273 (351)
372 PRK10083 putative oxidoreducta 83.0 7.5 0.00016 35.7 8.8 99 109-213 159-260 (339)
373 cd08238 sorbose_phosphate_red 82.9 18 0.0004 34.4 11.6 97 109-211 174-287 (410)
374 KOG0022 Alcohol dehydrogenase, 82.8 10 0.00022 34.8 8.9 95 109-213 191-295 (375)
375 PRK07066 3-hydroxybutyryl-CoA 82.7 14 0.0003 34.2 10.2 138 111-255 7-187 (321)
376 COG1062 AdhC Zn-dependent alco 82.7 7.8 0.00017 35.9 8.2 103 102-214 178-287 (366)
377 TIGR00675 dcm DNA-methyltransf 82.6 2.8 6.1E-05 38.6 5.6 123 114-251 1-138 (315)
378 cd08293 PTGR2 Prostaglandin re 82.6 17 0.00037 33.4 11.0 92 111-212 155-254 (345)
379 PRK05786 fabG 3-ketoacyl-(acyl 82.4 22 0.00047 30.6 11.0 103 110-213 4-136 (238)
380 cd08231 MDR_TM0436_like Hypoth 82.4 23 0.0005 32.9 11.9 95 109-213 176-281 (361)
381 PRK11730 fadB multifunctional 82.3 15 0.00033 38.0 11.3 136 112-255 314-495 (715)
382 PRK11154 fadJ multifunctional 81.9 20 0.00044 37.0 12.0 138 111-255 309-492 (708)
383 PF05050 Methyltransf_21: Meth 81.7 3 6.5E-05 33.8 5.0 38 116-153 1-42 (167)
384 PRK08265 short chain dehydroge 81.4 18 0.00039 31.8 10.3 101 110-213 5-137 (261)
385 cd05213 NAD_bind_Glutamyl_tRNA 81.3 8.6 0.00019 35.3 8.3 94 110-214 177-273 (311)
386 cd05281 TDH Threonine dehydrog 81.1 9.5 0.00021 35.1 8.7 97 109-213 162-263 (341)
387 cd08301 alcohol_DH_plants Plan 81.1 9.6 0.00021 35.6 8.8 96 109-213 186-290 (369)
388 PF14740 DUF4471: Domain of un 80.9 3.6 7.8E-05 37.3 5.5 67 173-250 220-286 (289)
389 PF05711 TylF: Macrocin-O-meth 80.9 8 0.00017 34.3 7.6 104 110-215 74-215 (248)
390 PF00145 DNA_methylase: C-5 cy 80.9 2.2 4.7E-05 39.1 4.2 129 113-259 2-147 (335)
391 cd08296 CAD_like Cinnamyl alco 80.8 7.1 0.00015 35.9 7.7 95 109-213 162-260 (333)
392 TIGR00936 ahcY adenosylhomocys 80.8 26 0.00056 33.5 11.4 90 109-214 193-284 (406)
393 COG1568 Predicted methyltransf 80.8 6.1 0.00013 35.4 6.6 125 110-251 152-286 (354)
394 cd08286 FDH_like_ADH2 formalde 80.5 11 0.00024 34.7 8.9 98 109-212 165-266 (345)
395 cd08278 benzyl_alcohol_DH Benz 80.1 6.3 0.00014 36.9 7.2 96 109-213 185-286 (365)
396 PRK03659 glutathione-regulated 80.1 18 0.00038 36.6 10.7 91 112-213 401-499 (601)
397 KOG0023 Alcohol dehydrogenase, 80.0 4.9 0.00011 36.8 5.9 98 110-214 181-281 (360)
398 TIGR00497 hsdM type I restrict 79.9 15 0.00033 36.2 10.0 103 110-212 217-355 (501)
399 TIGR02437 FadB fatty oxidation 79.7 22 0.00047 36.8 11.4 137 111-255 313-495 (714)
400 PRK05808 3-hydroxybutyryl-CoA 79.7 15 0.00033 33.0 9.3 136 112-255 4-185 (282)
401 PRK11064 wecC UDP-N-acetyl-D-m 79.3 37 0.0008 32.6 12.2 101 112-215 4-122 (415)
402 PRK08306 dipicolinate synthase 79.1 15 0.00032 33.6 9.0 89 110-211 151-240 (296)
403 PRK06035 3-hydroxyacyl-CoA deh 77.7 20 0.00044 32.4 9.5 136 112-255 4-188 (291)
404 TIGR00692 tdh L-threonine 3-de 77.6 13 0.00028 34.3 8.4 98 109-213 160-262 (340)
405 cd08298 CAD2 Cinnamyl alcohol 77.6 22 0.00047 32.4 9.9 90 109-212 166-256 (329)
406 COG0771 MurD UDP-N-acetylmuram 77.3 20 0.00043 34.7 9.6 73 111-186 7-80 (448)
407 KOG1098 Putative SAM-dependent 77.0 2.3 5.1E-05 42.1 3.2 96 106-209 40-155 (780)
408 PF03446 NAD_binding_2: NAD bi 76.6 11 0.00024 30.8 6.9 113 113-255 3-122 (163)
409 PRK08324 short chain dehydroge 76.6 20 0.00042 36.9 10.0 102 110-213 421-558 (681)
410 TIGR02441 fa_ox_alpha_mit fatt 76.2 22 0.00048 36.9 10.3 136 112-255 336-517 (737)
411 cd05279 Zn_ADH1 Liver alcohol 76.0 14 0.00031 34.5 8.3 99 109-213 182-286 (365)
412 KOG1209 1-Acyl dihydroxyaceton 75.7 25 0.00053 30.5 8.6 70 110-183 6-89 (289)
413 PRK10669 putative cation:proto 75.5 37 0.00079 34.0 11.5 89 112-211 418-514 (558)
414 PRK05396 tdh L-threonine 3-deh 75.5 14 0.0003 34.0 8.0 94 110-213 163-264 (341)
415 cd08265 Zn_ADH3 Alcohol dehydr 75.3 28 0.0006 32.8 10.1 97 109-213 202-308 (384)
416 cd08279 Zn_ADH_class_III Class 75.2 12 0.00026 34.9 7.5 94 109-212 181-282 (363)
417 PF01488 Shikimate_DH: Shikima 74.6 5.5 0.00012 31.6 4.4 76 110-188 11-88 (135)
418 PF02737 3HCDH_N: 3-hydroxyacy 74.6 14 0.0003 31.0 7.0 132 113-252 1-178 (180)
419 PF11253 DUF3052: Protein of u 74.5 29 0.00064 27.2 8.1 75 173-259 43-117 (127)
420 PRK06522 2-dehydropantoate 2-r 74.1 42 0.00091 30.2 10.7 93 113-211 2-99 (304)
421 COG2933 Predicted SAM-dependen 74.0 17 0.00036 32.5 7.3 87 109-205 210-296 (358)
422 PRK12481 2-deoxy-D-gluconate 3 73.5 40 0.00086 29.5 10.1 74 110-185 7-93 (251)
423 PRK05708 2-dehydropantoate 2-r 73.3 36 0.00079 31.0 10.0 92 112-211 3-103 (305)
424 PRK06500 short chain dehydroge 73.1 56 0.0012 28.1 10.9 74 110-185 5-90 (249)
425 PRK03562 glutathione-regulated 72.9 67 0.0014 32.7 12.6 92 111-212 400-498 (621)
426 PRK09599 6-phosphogluconate de 72.5 57 0.0012 29.6 11.1 116 113-252 2-119 (301)
427 cd08263 Zn_ADH10 Alcohol dehyd 72.4 55 0.0012 30.4 11.3 94 109-212 186-287 (367)
428 KOG1197 Predicted quinone oxid 72.3 33 0.00071 30.7 8.7 96 109-212 145-245 (336)
429 COG0287 TyrA Prephenate dehydr 72.1 21 0.00045 32.3 7.9 90 111-209 3-95 (279)
430 PRK07576 short chain dehydroge 72.0 40 0.00086 29.7 9.8 73 110-183 8-94 (264)
431 cd08240 6_hydroxyhexanoate_dh_ 71.6 22 0.00048 32.8 8.4 95 110-213 175-275 (350)
432 COG1748 LYS9 Saccharopine dehy 71.5 14 0.0003 35.1 6.8 69 112-181 2-74 (389)
433 PF11899 DUF3419: Protein of u 71.4 8.2 0.00018 36.6 5.3 41 109-151 34-74 (380)
434 COG0541 Ffh Signal recognition 71.1 19 0.00041 34.5 7.5 108 109-216 98-225 (451)
435 COG4017 Uncharacterized protei 71.0 19 0.00041 30.5 6.7 89 109-215 43-132 (254)
436 PRK07417 arogenate dehydrogena 71.0 25 0.00054 31.6 8.3 84 113-208 2-87 (279)
437 COG4121 Uncharacterized conser 70.8 30 0.00066 30.7 8.4 125 110-255 58-231 (252)
438 cd05289 MDR_like_2 alcohol deh 70.8 36 0.00077 30.2 9.4 92 109-212 143-238 (309)
439 TIGR02440 FadJ fatty oxidation 70.8 38 0.00081 35.0 10.4 137 112-255 305-487 (699)
440 PF04072 LCM: Leucine carboxyl 70.6 10 0.00022 31.8 5.3 79 111-190 79-172 (183)
441 TIGR00872 gnd_rel 6-phosphoglu 70.4 42 0.00092 30.5 9.7 117 113-254 2-120 (298)
442 PF07279 DUF1442: Protein of u 70.2 31 0.00068 29.8 8.0 97 110-213 41-149 (218)
443 PRK14106 murD UDP-N-acetylmura 70.1 87 0.0019 30.1 12.4 72 110-185 4-78 (450)
444 PLN02702 L-idonate 5-dehydroge 69.9 35 0.00076 31.7 9.4 99 109-213 180-286 (364)
445 PRK07819 3-hydroxybutyryl-CoA 69.6 20 0.00043 32.5 7.3 97 112-216 6-125 (286)
446 PF12692 Methyltransf_17: S-ad 69.2 7.2 0.00016 31.5 3.7 99 111-213 29-135 (160)
447 PRK15057 UDP-glucose 6-dehydro 69.1 72 0.0016 30.3 11.3 38 113-152 2-40 (388)
448 PRK09260 3-hydroxybutyryl-CoA 69.0 35 0.00075 30.8 8.8 136 112-254 2-183 (288)
449 PLN00203 glutamyl-tRNA reducta 68.8 18 0.00039 35.9 7.3 105 110-216 265-371 (519)
450 cd08274 MDR9 Medium chain dehy 68.7 74 0.0016 29.1 11.2 91 109-212 176-273 (350)
451 PF02153 PDH: Prephenate dehyd 68.6 9.8 0.00021 33.9 5.0 78 124-211 1-78 (258)
452 PF06557 DUF1122: Protein of u 67.7 25 0.00055 28.8 6.6 65 192-261 66-131 (170)
453 cd08241 QOR1 Quinone oxidoredu 67.5 32 0.00069 30.7 8.4 93 109-212 138-238 (323)
454 PRK10458 DNA cytosine methylas 67.1 25 0.00054 34.3 7.7 57 111-169 88-146 (467)
455 PRK09072 short chain dehydroge 67.1 62 0.0013 28.3 10.0 75 110-186 4-91 (263)
456 cd08266 Zn_ADH_like1 Alcohol d 67.1 30 0.00066 31.2 8.2 94 109-212 165-265 (342)
457 PRK07889 enoyl-(acyl carrier p 66.9 59 0.0013 28.5 9.7 102 110-212 6-145 (256)
458 PRK08594 enoyl-(acyl carrier p 66.8 79 0.0017 27.7 10.5 104 110-213 6-148 (257)
459 cd08243 quinone_oxidoreductase 66.7 75 0.0016 28.4 10.7 92 109-213 141-239 (320)
460 COG0863 DNA modification methy 66.6 22 0.00048 32.0 7.1 58 94-155 208-265 (302)
461 cd01065 NAD_bind_Shikimate_DH 66.6 34 0.00074 27.3 7.6 74 110-187 18-93 (155)
462 PRK06079 enoyl-(acyl carrier p 66.1 90 0.002 27.2 10.9 102 110-212 6-143 (252)
463 cd08282 PFDH_like Pseudomonas 65.8 40 0.00087 31.6 8.9 98 109-212 175-285 (375)
464 PF03721 UDPG_MGDP_dh_N: UDP-g 65.7 35 0.00075 28.7 7.6 98 113-216 2-124 (185)
465 cd05283 CAD1 Cinnamyl alcohol 65.6 38 0.00082 31.1 8.5 95 109-213 168-264 (337)
466 cd05284 arabinose_DH_like D-ar 65.3 26 0.00057 32.0 7.4 95 109-212 166-266 (340)
467 cd08289 MDR_yhfp_like Yhfp put 65.1 53 0.0011 29.7 9.4 94 110-213 146-244 (326)
468 PF10237 N6-adenineMlase: Prob 64.9 56 0.0012 26.9 8.4 96 110-213 25-124 (162)
469 PRK05854 short chain dehydroge 64.6 52 0.0011 30.0 9.2 74 110-185 13-103 (313)
470 PRK07502 cyclohexadienyl dehyd 64.6 43 0.00093 30.5 8.6 91 111-210 6-98 (307)
471 PRK06701 short chain dehydroge 64.5 40 0.00087 30.3 8.3 102 110-213 45-182 (290)
472 PRK12490 6-phosphogluconate de 64.4 67 0.0014 29.2 9.8 114 113-253 2-120 (299)
473 PRK07109 short chain dehydroge 64.3 65 0.0014 29.7 9.8 74 110-185 7-95 (334)
474 PRK05476 S-adenosyl-L-homocyst 64.2 53 0.0011 31.7 9.3 89 110-214 211-301 (425)
475 cd08284 FDH_like_2 Glutathione 64.1 1E+02 0.0022 28.2 11.1 94 109-213 166-267 (344)
476 PRK07533 enoyl-(acyl carrier p 64.1 94 0.002 27.2 10.5 103 110-212 9-148 (258)
477 cd08287 FDH_like_ADH3 formalde 64.1 37 0.00081 31.1 8.2 95 110-213 168-269 (345)
478 cd08260 Zn_ADH6 Alcohol dehydr 64.1 30 0.00065 31.7 7.6 94 109-212 164-264 (345)
479 PF01262 AlaDh_PNT_C: Alanine 63.2 2.8 6.1E-05 34.7 0.4 96 110-210 19-137 (168)
480 PRK09422 ethanol-active dehydr 63.2 38 0.00081 30.9 8.0 95 109-212 161-261 (338)
481 TIGR01832 kduD 2-deoxy-D-gluco 63.1 91 0.002 26.8 10.2 72 110-185 4-90 (248)
482 cd08291 ETR_like_1 2-enoyl thi 62.8 25 0.00054 32.0 6.8 91 111-212 143-242 (324)
483 PRK06182 short chain dehydroge 62.5 69 0.0015 28.2 9.4 71 111-186 3-85 (273)
484 PRK06484 short chain dehydroge 62.4 96 0.0021 30.4 11.2 101 110-213 268-401 (520)
485 KOG0821 Predicted ribosomal RN 62.2 17 0.00037 31.6 4.9 70 95-166 36-107 (326)
486 cd08270 MDR4 Medium chain dehy 61.6 1.1E+02 0.0024 27.2 10.7 89 110-212 132-222 (305)
487 PRK07806 short chain dehydroge 61.2 1E+02 0.0022 26.5 10.2 103 110-213 5-135 (248)
488 PRK08177 short chain dehydroge 61.1 85 0.0019 26.7 9.5 69 112-185 2-81 (225)
489 cd08235 iditol_2_DH_like L-idi 60.7 95 0.0021 28.3 10.3 94 109-212 164-265 (343)
490 PRK12742 oxidoreductase; Provi 60.4 1.1E+02 0.0023 26.1 10.7 99 110-213 5-132 (237)
491 PRK12939 short chain dehydroge 60.3 59 0.0013 28.0 8.5 75 110-185 6-94 (250)
492 cd08297 CAD3 Cinnamyl alcohol 60.1 41 0.00089 30.7 7.7 94 109-212 164-265 (341)
493 TIGR02356 adenyl_thiF thiazole 60.0 42 0.00091 28.6 7.2 33 110-143 20-54 (202)
494 cd08256 Zn_ADH2 Alcohol dehydr 59.9 39 0.00085 31.1 7.6 95 109-212 173-274 (350)
495 cd05288 PGDH Prostaglandin deh 59.9 99 0.0022 27.9 10.2 94 109-212 144-244 (329)
496 PRK00045 hemA glutamyl-tRNA re 59.8 46 0.00099 32.0 8.1 70 110-185 181-252 (423)
497 TIGR01470 cysG_Nterm siroheme 59.6 44 0.00096 28.6 7.2 86 110-209 8-97 (205)
498 cd08267 MDR1 Medium chain dehy 59.6 79 0.0017 28.2 9.4 94 109-212 142-240 (319)
499 PRK06181 short chain dehydroge 59.4 66 0.0014 28.1 8.7 73 112-185 2-88 (263)
500 PRK05562 precorrin-2 dehydroge 59.3 97 0.0021 27.0 9.3 85 110-208 24-112 (223)
No 1
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=100.00 E-value=5.8e-51 Score=372.32 Aligned_cols=336 Identities=86% Similarity=1.447 Sum_probs=302.6
Q ss_pred CcccccccccccceecccCCCCcccccccccCCcCCCccccCCCcce----eeeecccccCCCCCCchHHhhhhhhhHHH
Q 019684 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTV----QSIKCSLSATSRPASQPRFIQHKKEAFWF 76 (337)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (337)
||++|++|++.++++.+..|.|++|+++++++.+++...+....... ....|+. ...++.+++++.|+..+.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~~~~~ 79 (340)
T PLN02490 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSS-SSSRPASQPRFIQHKKEAFWF 79 (340)
T ss_pred CCccccccccccccccccCCcccCCCCCcccccccccccccccCcccccceecccccc-ccCCcccccchhhhhhcceeE
Confidence 89999999999999999999999999999999998866555444333 3344554 367899999999999999999
Q ss_pred hhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC
Q 019684 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (337)
Q Consensus 77 y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 156 (337)
|+..+..|+..+.+.+|.+.++...++...+..++.+|||||||+|.++..+++..++.+|+++|+|+.|++.++++...
T Consensus 80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~ 159 (340)
T PLN02490 80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159 (340)
T ss_pred ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc
Confidence 99999999998888888988888888776655577899999999999999998887778999999999999999988665
Q ss_pred CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHH
Q 019684 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (337)
Q Consensus 157 ~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
.+++++.+|++++++++++||+|++..+++|+++++.++++++++|||||++++.++..+..+..+.+.+.+..+.+.++
T Consensus 160 ~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 160 KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 67899999999989888899999999999999999999999999999999999887665555555555566666778999
Q ss_pred HHHHHHhCCCcEEEEEEcCcccccccccccceeeeeeeeccCCCCCCCCccCchhhcccCCCCchhHHHHHHHHhhhhhh
Q 019684 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSKPVNPFVLLLRFVLGALAATY 316 (337)
Q Consensus 237 ~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~kp~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (337)
+.++|+++||+.+++.++.+.|+++++.++.++.+.+.++||..+++++++|+++++..+..||+.|+.+|..|+.++++
T Consensus 240 l~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
T PLN02490 240 YIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSKPVNPFSFLLRFILGTIAATY 319 (340)
T ss_pred HHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccCccccccccCcCchhhhHHHHhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhhhhcccCCCCCC
Q 019684 317 FVLVPIYMWLKDQIVPKGQPI 337 (337)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~ 337 (337)
+.|.|+|+|.+++|+||||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~ 340 (340)
T PLN02490 320 YVLVPIYMWLKDQIVPKGQPI 340 (340)
T ss_pred HhhhhHHHHHhcccccCCCCC
Confidence 999999999999999999997
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.94 E-value=2.2e-25 Score=193.43 Aligned_cols=179 Identities=30% Similarity=0.400 Sum_probs=139.9
Q ss_pred HHHhhhhhHhhhccc---CCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 019684 74 FWFYRFLSIVYDHVI---NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (337)
Q Consensus 74 ~~~y~~~~~~y~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a 150 (337)
...|+..+..|+.+- .-+ ....+++......... +|.+|||||||||.++..+++..+.++|+|+|+|+.|++.+
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g-~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFG-LHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHhhHHHHHhhcccccCc-chHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 345555666666543 211 2233444444444443 79999999999999999999998889999999999999999
Q ss_pred HhhCCCC---CeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch-hHh-----
Q 019684 151 KQKEPLK---ECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLS----- 221 (337)
Q Consensus 151 ~~~~~~~---~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~----- 221 (337)
+++.... +++|+++|++++||+|++||+|.+.+.|++++|++++|+|++|+|||||++++.+...+.. +..
T Consensus 92 ~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 92 REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred HHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 9987652 3899999999999999999999999999999999999999999999999999987665432 111
Q ss_pred ---------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 222 ---------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 222 ---------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.++......+++.+++.++++++||+.+..+.+
T Consensus 172 ~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 172 YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 112222334688999999999999998885554
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.92 E-value=2.7e-25 Score=194.73 Aligned_cols=177 Identities=33% Similarity=0.511 Sum_probs=88.5
Q ss_pred HHHhhhhhHhhhccc---C---CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHH
Q 019684 74 FWFYRFLSIVYDHVI---N---PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ 146 (337)
Q Consensus 74 ~~~y~~~~~~y~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~ 146 (337)
...|+..+..|+... . +..|...+ ++.... .++.+|||+|||||.++..+++.. +..+|+|+|+|+.|
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~----~~~~~~-~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKL----IKLLGL-RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp ---------------------------SHH----HHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHH----HhccCC-CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 345666666666531 1 22344433 333332 378899999999999999998875 45899999999999
Q ss_pred HHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-
Q 019684 147 LAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR- 222 (337)
Q Consensus 147 ~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~- 222 (337)
++.|+++.. ..+++++++|++++|+++++||+|++.+.+++++|+.+.++|++|+|||||++++.+...+......
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 999998743 2489999999999999999999999999999999999999999999999999999876655332111
Q ss_pred -------------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 -------------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 -------------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++......+.+.+++.++|+++||+.++.+.+.
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp HHHH------------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111222345788999999999999998887654
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.92 E-value=2.6e-23 Score=186.12 Aligned_cols=183 Identities=25% Similarity=0.276 Sum_probs=137.9
Q ss_pred hhHHHhhhhhHhhhcccCCC--cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHH
Q 019684 72 EAFWFYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLA 148 (337)
Q Consensus 72 ~~~~~y~~~~~~y~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~ 148 (337)
.....|+..+..|+...... .....+....++.... +++.+|||+|||+|.++..+++.. +..+|+|+|+|++|++
T Consensus 34 ~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~ 112 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA 112 (261)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 34456777777777532210 0112233333333333 368899999999999999988875 4579999999999999
Q ss_pred HHHhhCC------CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 149 KAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 149 ~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
.|+++.. ..+++++++|++++|+++++||+|++.++++|++|+..++++++|+|||||++++.+...+......
T Consensus 113 ~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~ 192 (261)
T PLN02233 113 VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTT 192 (261)
T ss_pred HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHH
Confidence 9987642 2478999999999999999999999999999999999999999999999999999876654321110
Q ss_pred -------------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 -------------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 -------------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++......+.+.+++.++|+++||++++...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 193 SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 011222357899999999999999999887765
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.90 E-value=3.3e-22 Score=170.33 Aligned_cols=233 Identities=33% Similarity=0.468 Sum_probs=158.6
Q ss_pred cccccccccceecccCCCCcccccccccCCcCCCccc-cC-CCcceeeeeccc-c-cCCCCCCchHHhhhhhhhHHHhhh
Q 019684 4 SMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSL-IA-KPRTVQSIKCSL-S-ATSRPASQPRFIQHKKEAFWFYRF 79 (337)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~y~~ 79 (337)
.|.||+-.+ +.|+++.....+.++++.-.+ .. .........|+- . +.+++....++++...+..+++
T Consensus 2 ~~~~~a~~~-------~~~l~~p~~~~~ars~~~~~~~s~s~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~-- 72 (296)
T KOG1540|consen 2 LRMNGAILL-------PLGLRSPGSFLNARSFSSNTLLSSSSPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAKK-- 72 (296)
T ss_pred cccchhhhh-------cccccCCccccccccccccccccccccccccccccccccccccchhhhhhHHHHHHHHHHHH--
Confidence 455665532 456666667776666653222 11 111112223332 1 1233333344444444444433
Q ss_pred hhHhhhcccCCCc--chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC------CeEEEEeCCHHHHHHHH
Q 019684 80 LSIVYDHVINPGH--WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAK 151 (337)
Q Consensus 80 ~~~~y~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~------~~v~gvD~s~~~~~~a~ 151 (337)
+...++.+....| |.... +..+.. .++.++||++||||..+..+.+..+. .+|+++|+|+.|++.++
T Consensus 73 YD~mND~mSlGiHRlWKd~~----v~~L~p-~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk 147 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMF----VSKLGP-GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK 147 (296)
T ss_pred HHHHHHHhhcchhHHHHHHh----hhccCC-CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH
Confidence 3444555444333 63332 333333 36799999999999999999988765 89999999999999999
Q ss_pred hhCCC------CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch-hHh---
Q 019684 152 QKEPL------KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLS--- 221 (337)
Q Consensus 152 ~~~~~------~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~--- 221 (337)
++... ..+.++++|++++||++++||...+.+.+..++|+++.+++++|+|||||++.+.+...... .+.
T Consensus 148 qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 148 QRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred HHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 88622 33889999999999999999999999999999999999999999999999999887655432 111
Q ss_pred ----------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 222 ----------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 222 ----------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
.++......+.+.+++..+.+++||..+.
T Consensus 228 ~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 228 DQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11223334578999999999999999886
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=1.3e-21 Score=181.62 Aligned_cols=188 Identities=23% Similarity=0.269 Sum_probs=139.9
Q ss_pred hhhhhHHHhhhhhHhhhcccC----CCcch------------HHHHHHhccccCCC----CCCCEEEEEcCcccHHHHHH
Q 019684 69 HKKEAFWFYRFLSIVYDHVIN----PGHWT------------EDMRDDALEPADLS----NRNMLVVDVGGGTGFTTLGI 128 (337)
Q Consensus 69 ~~~~~~~~y~~~~~~y~~~~~----~~~~~------------~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~l 128 (337)
...+...+|+.....|+.... .+.|. ..+.+.++..+.+. .++.+|||||||+|.++..+
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~L 136 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYL 136 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHH
Confidence 334556677766666665332 11111 23444455555441 46789999999999999999
Q ss_pred HhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccC
Q 019684 129 VKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204 (337)
Q Consensus 129 ~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp 204 (337)
++.+ +.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++..+++|++|..++++++.++|||
T Consensus 137 a~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkp 215 (340)
T PLN02244 137 ARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAP 215 (340)
T ss_pred HHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCC
Confidence 9986 7899999999999999987642 2468999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCch---------hHhhhhhhhhc-----cCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 205 GGKACIIGPVYPTF---------WLSRYFADVWM-----LFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 205 gG~l~i~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
||++++.+...... ........... .+.+.+++.++++++||+++++.++...
T Consensus 216 GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 216 GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 99999976543211 11111111111 2348999999999999999999887643
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.89 E-value=2.4e-21 Score=170.69 Aligned_cols=180 Identities=28% Similarity=0.376 Sum_probs=135.4
Q ss_pred HHhhhhhHhhhcccC--CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHH
Q 019684 75 WFYRFLSIVYDHVIN--PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAK 151 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~ 151 (337)
.+|+..+..|+..-. .-.....++..++..+.+ .++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.++
T Consensus 9 ~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 9 KVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV-QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 445555555554211 111233344445555554 368899999999999999999875 5679999999999999999
Q ss_pred hhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH-h------
Q 019684 152 QKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-S------ 221 (337)
Q Consensus 152 ~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~------ 221 (337)
++.. ..+++++.+|+.++++++++||+|++..+++|++++.++++++.++|+|||++++.+...+.... .
T Consensus 88 ~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~ 167 (231)
T TIGR02752 88 QKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFY 167 (231)
T ss_pred HHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHH
Confidence 7743 24689999999888888889999999999999999999999999999999999988765432211 0
Q ss_pred -------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 222 -------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 222 -------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.........+++.+++.++|+++||+++++..+.
T Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 168 FKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0111223356789999999999999999888765
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.87 E-value=5.8e-21 Score=171.10 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=128.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCc
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~f 176 (337)
...++..+.+ .++.+|||||||+|..+..++..+ +++|+|+|+|+.+++.++++... .++.++.+|+.+.++++++|
T Consensus 41 ~~~~l~~l~l-~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIEL-NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCC-CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 3444555554 378899999999999999988764 67999999999999999987643 56999999998888888899
Q ss_pred cEEEecccccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCch--h---HhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 177 DRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTF--W---LSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 177 D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
|+|++..+++|++ ++..++++++++|||||++++.+...... + ...+.......+.+.+++.++|+++||+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 9999999999986 77899999999999999999987654321 1 111111122245689999999999999999
Q ss_pred EEEEcCcccc
Q 019684 250 QLKRIGPKWY 259 (337)
Q Consensus 250 ~~~~~~~~~~ 259 (337)
+..+..+.|.
T Consensus 199 ~~~d~~~~~~ 208 (263)
T PTZ00098 199 VAKDISDYWL 208 (263)
T ss_pred eEEeCcHHHH
Confidence 9999886654
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.86 E-value=4.9e-21 Score=174.96 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=119.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .+++++++|++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5679999999999999999875 78999999999999999976432 36899999999888878899999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH----------hhhhh---hhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL----------SRYFA---DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|++|+..+++++.++|||||.+++.+........ ..+.. ..+..+++++++.++|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999998765432110 01111 123357899999999999999998885
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
-+.
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 553
No 10
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.86 E-value=3.1e-21 Score=169.23 Aligned_cols=205 Identities=15% Similarity=0.099 Sum_probs=142.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++|||||||+|.++..+++.+++.+++|+|+|+++++.++++... .+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 479999999999999999988888999999999999999987532 4679999999665654 47999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccccccccc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGL 267 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~ 267 (337)
+.++..+++++.++|||||++++.+....... ..........+.+.+++.++++++||++++...++..+....+....
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f 158 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLS-AIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPGF 158 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCc-cccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhccChhH
Confidence 99999999999999999999999876432110 00000111225688999999999999999999988665332211110
Q ss_pred eeeeeeeeccCCCCCCCCccCchhhcc-cCCCCchhHHH--HHHHHhhhhhhHhhHHHHhhhhhccc
Q 019684 268 IMGCSVTGVKPASGDSPLQLGPKAEDL-SKPVNPFVLLL--RFVLGALAATYFVLVPIYMWLKDQIV 331 (337)
Q Consensus 268 ~~~~~v~~~kp~~~~~~~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (337)
. .......+ + ..+. ..+.......+ .+..|......+++++.++|+.+++.
T Consensus 159 ~--~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 212 (224)
T smart00828 159 E--DNLERLYQ------D-----DLDEVTKRHFRGIANLGKLLEKGLASYALLIVQKDEFLSIEELR 212 (224)
T ss_pred H--HHHHHhcc------c-----cchHHHHHHHhhHHHHHHHHHhchHhhEEEEEeccccCCHHHHH
Confidence 0 00000000 0 0111 12222222222 34455566677789999999999874
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.85 E-value=5.5e-20 Score=164.49 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=113.8
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEE
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
++..+.. .++.+|||||||+|.++..+++..|+.+|+|+|+|+.|++.|++ .+++++++|+++++ .+++||+|+
T Consensus 21 ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----~~~~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 21 LLARVGA-ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----RGVDARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred HHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----cCCcEEEcChhhCC-CCCCceEEE
Confidence 3444443 36789999999999999999999888999999999999999986 36889999998764 457899999
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC---chhH-hhh-----hh----hh----hccCCCHHHHHHHHHh
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP---TFWL-SRY-----FA----DV----WMLFPKEEEYIEWFQK 243 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~-~~~-----~~----~~----~~~~~~~~~~~~~l~~ 243 (337)
++.+++|++++..++++++++|||||++++..+... .... ... +. .. ...+.+.+++.++|++
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999999999999999999999999999998754321 1111 000 10 00 1134689999999999
Q ss_pred CCCcEEEEE
Q 019684 244 AGFKDVQLK 252 (337)
Q Consensus 244 aGF~~v~~~ 252 (337)
+||++....
T Consensus 175 aGf~v~~~~ 183 (255)
T PRK14103 175 AGCKVDAWE 183 (255)
T ss_pred CCCeEEEEe
Confidence 999855444
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=2.2e-20 Score=159.47 Aligned_cols=144 Identities=23% Similarity=0.263 Sum_probs=119.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe--EEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||||||-|.++..+++. |++|+|+|+++.+++.|+.++....+ ++.+..++++....++||+|+|..|++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 7899999999999999999999 89999999999999999988766554 4788887777666689999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh------hhhh-------hhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYFA-------DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++|++.+++.+.+++||||.+++++.+....... .+.. ..+..+..++++..++..+|+.+.+..-+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 9999999999999999999999998875432111 1110 11224567899999999999998888665
Q ss_pred C
Q 019684 255 G 255 (337)
Q Consensus 255 ~ 255 (337)
.
T Consensus 217 ~ 217 (243)
T COG2227 217 T 217 (243)
T ss_pred E
Confidence 4
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.84 E-value=7.4e-20 Score=177.88 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=125.8
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
++.+.+ .++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++... .+++|+.+|+.+.++++++||+|
T Consensus 259 ~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 259 VDKLDL-KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred HHhcCC-CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEE
Confidence 333333 467899999999999999998875 78999999999999999887532 46899999998888888899999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc----hhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT----FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+++|++++..++++++++|||||++++.+..... .............+.+.+++.++|+++||+++++.+..
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 99999999999999999999999999999998754332 12222222222345789999999999999999888877
Q ss_pred ccc
Q 019684 256 PKW 258 (337)
Q Consensus 256 ~~~ 258 (337)
..+
T Consensus 417 ~~~ 419 (475)
T PLN02336 417 DQF 419 (475)
T ss_pred HHH
Confidence 554
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.83 E-value=4.4e-19 Score=156.77 Aligned_cols=182 Identities=29% Similarity=0.401 Sum_probs=134.3
Q ss_pred HHHhhhhhHhhhcc---cCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHH
Q 019684 74 FWFYRFLSIVYDHV---INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAK 149 (337)
Q Consensus 74 ~~~y~~~~~~y~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~ 149 (337)
..+|+..+..|+.. .... .........+...... ++.+|||+|||+|.++..++...+ ..+++++|+++.+++.
T Consensus 14 ~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 91 (239)
T PRK00216 14 AEMFDSIAPKYDLMNDLLSFG-LHRVWRRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV 91 (239)
T ss_pred HHHHHHhhhhHHHHHHHHhcC-CcHHHHHHHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Confidence 34556666666421 1111 1223333444444443 678999999999999999999876 5899999999999999
Q ss_pred HHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-h--
Q 019684 150 AKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-R-- 222 (337)
Q Consensus 150 a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~-- 222 (337)
++++... .++.++.+|+.+.++.+++||+|++..++++..++..+++++.++|+|||.+++.+...+..... .
T Consensus 92 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~ 171 (239)
T PRK00216 92 GREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAY 171 (239)
T ss_pred HHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHH
Confidence 9988543 46899999998877777889999999999999999999999999999999998876543321100 0
Q ss_pred -----------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 223 -----------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 223 -----------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
........+++.+++.++|+++||+++++......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 172 DFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred HHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 00111134568899999999999999999887633
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.83 E-value=1.4e-19 Score=161.86 Aligned_cols=145 Identities=20% Similarity=0.325 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC-CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~-~~~~~fD~i~~~~ 183 (337)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++... .+++++++|+.+++ +.+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 35689999999999999999987 78999999999999999987532 46889999997654 5567899999999
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh--------hhh---------hccCCCHHHHHHHHHhCCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF--------ADV---------WMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~l~~aGF 246 (337)
+++|+.++..+++++.++|||||++++.............. ... .....+++++.++|+++||
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999998875554322111110 000 0123578999999999999
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++++..-+.
T Consensus 201 ~~~~~~gi~ 209 (255)
T PRK11036 201 QIMGKTGVR 209 (255)
T ss_pred eEeeeeeEE
Confidence 998776543
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.83 E-value=2e-20 Score=155.09 Aligned_cols=133 Identities=29% Similarity=0.395 Sum_probs=106.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||||||+|.++..+++. +.+++|+|+|+.+++. .+......+....+.++++||+|++..+++|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 47899999999999999999777 6699999999999988 23444554444545667899999999999999
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh----h-h--hhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY----F-A--DVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
+|+..+++++.++|||||++++.++.......... . . ..+..+++.+++.++++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999887542111111 0 1 1233567999999999999999886
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.83 E-value=5.9e-20 Score=138.32 Aligned_cols=95 Identities=37% Similarity=0.571 Sum_probs=87.2
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHH
Q 019684 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 194 (337)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~ 194 (337)
||+|||+|..+..+++. ++.+|+++|+|+.+++.++++....++.+..+|++++|+++++||+|++..+++|++++.++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999998 78999999999999999999988788889999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEE
Q 019684 195 IREAYRVLKLGGKACI 210 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i 210 (337)
++++.|+|||||+++|
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999986
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=1.6e-19 Score=166.06 Aligned_cols=146 Identities=24% Similarity=0.302 Sum_probs=114.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh--hC--CCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KE--PLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~--~~--~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..++... ...|+|+|+|+.++..++. +. ...++.++.+|++++++ +++||+|++..++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 57899999999999999999883 3469999999999876443 22 13579999999999888 7789999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhhhhhhh--ccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVW--MLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
+|..++..++++++++|+|||.+++.+...... ...++ .... ...++.+++.++|+++||+++++......
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t 278 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVT 278 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 999999999999999999999998864322110 01111 1111 12358999999999999999999887754
Q ss_pred c
Q 019684 258 W 258 (337)
Q Consensus 258 ~ 258 (337)
+
T Consensus 279 ~ 279 (322)
T PRK15068 279 T 279 (322)
T ss_pred C
Confidence 4
No 19
>PRK05785 hypothetical protein; Provisional
Probab=99.82 E-value=3.8e-19 Score=155.79 Aligned_cols=173 Identities=21% Similarity=0.179 Sum_probs=123.4
Q ss_pred hHHHhhhhhHhhhcccC------CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHH
Q 019684 73 AFWFYRFLSIVYDHVIN------PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146 (337)
Q Consensus 73 ~~~~y~~~~~~y~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~ 146 (337)
....|+..+..|+.... +..|...+...+.... .++.+|||||||||.++..+++.. +.+|+|+|+|++|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~---~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC---GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc---CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 34567777777775421 1224444444333222 246899999999999999999886 5799999999999
Q ss_pred HHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCC-EEEEEcCCCCc------h-
Q 019684 147 LAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG-KACIIGPVYPT------F- 218 (337)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~------~- 218 (337)
++.|+++ ..++++|++++|+++++||+|++..+++|++|+++.+++++|+|||.. .+.+..+.... .
T Consensus 87 l~~a~~~-----~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y 161 (226)
T PRK05785 87 LKMNLVA-----DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFY 161 (226)
T ss_pred HHHHHhc-----cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHH
Confidence 9999864 246789999999999999999999999999999999999999999953 33332222110 0
Q ss_pred ----------------hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 219 ----------------WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 219 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....++......+.+.+++.++|+++| ..++.+.+.
T Consensus 162 ~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~ 213 (226)
T PRK05785 162 LRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERG 213 (226)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEcc
Confidence 001122233345788999999999974 656666554
No 20
>PRK08317 hypothetical protein; Provisional
Probab=99.81 E-value=1.3e-18 Score=153.64 Aligned_cols=160 Identities=25% Similarity=0.357 Sum_probs=124.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhh--CCCCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~d~~~~~~ 171 (337)
..++..++....+. ++.+|||+|||+|.++..+++.+ |..+++|+|+|+.+++.++++ ....++.+...|+.+.++
T Consensus 5 ~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 5 RRYRARTFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 34445555555553 78899999999999999999887 678999999999999999887 233578999999988888
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch--------hHhhhhhhh---hccCCCHHHHHHH
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF--------WLSRYFADV---WMLFPKEEEYIEW 240 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~ 240 (337)
.+++||+|++..+++|++++..+++++.++|||||.+++.++..... ......... .....+...+.++
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGL 163 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 88899999999999999999999999999999999999887542211 111111111 1122456789999
Q ss_pred HHhCCCcEEEEEEcC
Q 019684 241 FQKAGFKDVQLKRIG 255 (337)
Q Consensus 241 l~~aGF~~v~~~~~~ 255 (337)
|+++||+++++....
T Consensus 164 l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 164 FREAGLTDIEVEPYT 178 (241)
T ss_pred HHHcCCCceeEEEEE
Confidence 999999988776653
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.81 E-value=8.3e-19 Score=159.66 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=120.8
Q ss_pred CCCcchHHHHHH-hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh---hC-CCCCeEEEE
Q 019684 89 NPGHWTEDMRDD-ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KE-PLKECKIVE 163 (337)
Q Consensus 89 ~~~~~~~~~~~~-~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~---~~-~~~~~~~~~ 163 (337)
.+.+|...+... ++..+.. .++++|||||||+|.++..++... ...|+|+|+|+.++..++. .. ...++.+..
T Consensus 100 ~~~e~~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 100 IDSEWRSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred CCHHHHHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 344565555533 3444333 267899999999999999888873 3479999999999876432 22 235678888
Q ss_pred cCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhh--hhhhhccCCCHH
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRY--FADVWMLFPKEE 235 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~--~~~~~~~~~~~~ 235 (337)
.++++++.. .+||+|++..+++|.+++..++++++++|||||.|++.+...... ...++ +... ...++.+
T Consensus 178 ~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-~flpS~~ 255 (314)
T TIGR00452 178 LGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV-YFIPSVS 255 (314)
T ss_pred CCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc-ccCCCHH
Confidence 999888754 479999999999999999999999999999999999875322110 00111 1111 1246899
Q ss_pred HHHHHHHhCCCcEEEEEEcCcc
Q 019684 236 EYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
++..+|+++||+++++......
T Consensus 256 ~L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 256 ALKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHHCCCeEEEEEeccCC
Confidence 9999999999999999887644
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.80 E-value=3.2e-18 Score=154.53 Aligned_cols=147 Identities=29% Similarity=0.428 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.|+++.. ..+++++.+|++++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 378999999999999888777664 34689999999999999998632 25789999999998888889999999999
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh--hhhhh----ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--FADVW----MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++|.++...+++++.++|||||++++.+........... ....+ ....+.+++.++|+++||.++++....
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~~ 232 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPKR 232 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEecc
Confidence 999999999999999999999999997654322110000 01111 123578899999999999998875543
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=2.7e-18 Score=153.18 Aligned_cols=149 Identities=23% Similarity=0.277 Sum_probs=118.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 174 (337)
......+++.+.. .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ...++++|++++++.++
T Consensus 28 ~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 28 RQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCcCCCC
Confidence 3344444444443 25689999999999999988876 6899999999999999998753 35688999999898888
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhh-----hhhccCCCHHHHHHHHHhCCCcE
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA-----DVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+||+|+++.++++.+++..++.++.++|+|||.+++.......... ...+. .....+.+.+++.+++...|++.
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 9999999999999999999999999999999999998766543321 11111 11235678999999999999864
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=4.7e-19 Score=145.95 Aligned_cols=135 Identities=27% Similarity=0.461 Sum_probs=107.6
Q ss_pred CCCEEEEEcCcccHHHHHHH-hhCCCCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~--~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..++ +..++.+++|+|+|+.+++.|+++ ....+++|+++|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 67899999999999999999 456789999999999999999985 33358999999998876 54 6799999999
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh------hhhhhhhccCC---CHHHHHHHHHhCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYFADVWMLFP---KEEEYIEWFQKAG 245 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~l~~aG 245 (337)
+++|+.++..+++++.+.|++||.+++.+......... ......+.... +.+++..+|++||
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 99999999999999999999999999987762221111 11112222223 7788889999887
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=5e-19 Score=157.36 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh--CCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
.++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 36789999999999999888873 478999999999999999998753 24689999999887764 49999999
Q ss_pred ccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCc-hh----Hhhhhh-----------------hh---hccCCCHH
Q 019684 183 GSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT-FW----LSRYFA-----------------DV---WMLFPKEE 235 (337)
Q Consensus 183 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~-~~----~~~~~~-----------------~~---~~~~~~~~ 235 (337)
.+++|+++. ..++++++++|||||.+++.+..... .. ...... .. .....+.+
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 999999754 57999999999999999998643211 00 000000 00 01125889
Q ss_pred HHHHHHHhCCCcEEEE
Q 019684 236 EYIEWFQKAGFKDVQL 251 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~ 251 (337)
+..++|+++||+.+++
T Consensus 213 ~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 213 THKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHcCchhHHH
Confidence 9999999999986544
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.79 E-value=1.2e-18 Score=156.16 Aligned_cols=162 Identities=22% Similarity=0.188 Sum_probs=113.2
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~ 172 (337)
..+.+++.+.+. +|.+|||||||.|.++..+++.+ +++|+|+++|+++.+.++++... .++++...|..+++.
T Consensus 50 k~~~~~~~~~l~-~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLK-PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCC-CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 344556777764 89999999999999999999997 78999999999999999876433 458899999887653
Q ss_pred CCCccEEEeccccccc--CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-------hhhhhhh---ccCCCHHHHHHH
Q 019684 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-------RYFADVW---MLFPKEEEYIEW 240 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~ 240 (337)
+||.|++..+++|+ .+...+++++.++|||||++++........... .++.... -..++.+++...
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 79999999999999 456899999999999999999875443322111 1111111 124578889999
Q ss_pred HHhCCCcEEEEEEcCcccccccc
Q 019684 241 FQKAGFKDVQLKRIGPKWYRGVR 263 (337)
Q Consensus 241 l~~aGF~~v~~~~~~~~~~~~~~ 263 (337)
++++||++.++..++.++.+..+
T Consensus 205 ~~~~~l~v~~~~~~~~hY~~Tl~ 227 (273)
T PF02353_consen 205 AEDAGLEVEDVENLGRHYARTLR 227 (273)
T ss_dssp HHHTT-EEEEEEE-HHHHHHHHH
T ss_pred HhcCCEEEEEEEEcCcCHHHHHH
Confidence 99999999999999876654433
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.79 E-value=2.4e-18 Score=152.00 Aligned_cols=143 Identities=27% Similarity=0.329 Sum_probs=119.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
.+.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++.. .++.++.+|+.+.++++++||+|++..+++|..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 4579999999999999999999888899999999999999998765 478999999998888888999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++..+++++.++|+|||.+++.++....... ..........+.+.+++.++++++ |+.+.....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 9999999999999999999998766544321 111222334577899999999998 987765443
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.79 E-value=2.3e-18 Score=152.54 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
.++.+|||+|||+|.++..+++.+ |+++++|+|+|+.|++.|+++... .+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 367899999999999999998863 689999999999999999987432 4689999999887764 48999999
Q ss_pred ccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCc-hhHhhhhh---------------------hh---hccCCCHH
Q 019684 183 GSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPT-FWLSRYFA---------------------DV---WMLFPKEE 235 (337)
Q Consensus 183 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~~~---------------------~~---~~~~~~~~ 235 (337)
.+++|+++ ...++++++++|||||.+++.++.... ......+. +. .....+.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 99999864 468999999999999999998764321 11101000 00 11246899
Q ss_pred HHHHHHHhCCCcEEEE
Q 019684 236 EYIEWFQKAGFKDVQL 251 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~ 251 (337)
++.++|+++||+.+++
T Consensus 210 ~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 210 THKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHcCCchHHH
Confidence 9999999999986553
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.78 E-value=1.6e-17 Score=145.20 Aligned_cols=146 Identities=32% Similarity=0.452 Sum_probs=119.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++.. ..++.++.+|+.+.++.+++||+|++..++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 6789999999999999999998765 699999999999999998753 34688999999888877778999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchh---------Hhh-----------------hhhhhhccCCCHHHHHHHH
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFW---------LSR-----------------YFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~~~~l 241 (337)
.+++..+++++.+.|+|||++++.+...+... ... +....+..+.+.+++.++|
T Consensus 119 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAML 198 (223)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999998765432210 000 0011123456889999999
Q ss_pred HhCCCcEEEEEEcC
Q 019684 242 QKAGFKDVQLKRIG 255 (337)
Q Consensus 242 ~~aGF~~v~~~~~~ 255 (337)
+++||+++++..+.
T Consensus 199 ~~aGf~~~~~~~~~ 212 (223)
T TIGR01934 199 KEAGFEEVRYRSLT 212 (223)
T ss_pred HHcCCccceeeeee
Confidence 99999999988876
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=1.9e-17 Score=148.43 Aligned_cols=146 Identities=25% Similarity=0.345 Sum_probs=113.0
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccE
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
..++..+.. .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. .++.++.+|+.++. .+++||+
T Consensus 21 ~~ll~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 21 RDLLARVPL-ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred HHHHhhCCC-cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC-CCCCccE
Confidence 334444444 3678999999999999999999888899999999999999999875 46889999997654 3458999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc---hh-H---------hhhhhhh---hccCCCHHHHHHHHH
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FW-L---------SRYFADV---WMLFPKEEEYIEWFQ 242 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-~---------~~~~~~~---~~~~~~~~~~~~~l~ 242 (337)
|+++.+++|++|...+++++.++|||||.+++..+.... .. . ...+... ...+.+.+.+.+++.
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999987533211 10 0 0000001 113467788999999
Q ss_pred hCCCcE
Q 019684 243 KAGFKD 248 (337)
Q Consensus 243 ~aGF~~ 248 (337)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999864
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=2.2e-18 Score=134.21 Aligned_cols=102 Identities=26% Similarity=0.398 Sum_probs=86.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCC-CCCCCCCCCccEEEecc-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDA-EDLPFPTDYADRYVSAG- 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~- 183 (337)
|+.+|||||||+|.++..+++..++.+|+|+|+|+.+++.++++. ...+++++++|+ ...... +.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999778999999999999999999886 347899999999 443333 4599999999
Q ss_pred ccccc---CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYW---PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+++++ ++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 345789999999999999999875
No 32
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.76 E-value=2.4e-18 Score=147.84 Aligned_cols=139 Identities=22% Similarity=0.266 Sum_probs=111.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----C----CeEEEEcCCCCCCCCCCCccEEEe
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~----~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
|++|||+|||+|.++..|++. ++.|+|+|+++.+++.|++.... . ++++...|++... +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 488999999999999999999 89999999999999999987432 1 2556666666543 44999999
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc------hhHhhhhhh-------hhccCCCHHHHHHHHHhCCCcE
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT------FWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
..+++|+.|++.+++.+.++|||||.+++++..... ......... .|..|.+++++..++..+|+.+
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999999999999999999999999999998765431 112222222 4456789999999999999987
Q ss_pred EEEEEc
Q 019684 249 VQLKRI 254 (337)
Q Consensus 249 v~~~~~ 254 (337)
.++.-.
T Consensus 245 ~~v~G~ 250 (282)
T KOG1270|consen 245 NDVVGE 250 (282)
T ss_pred hhhhcc
Confidence 666543
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=9.2e-18 Score=144.15 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++...|+.+.++. ++||+|++..+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 5689999999999999999987 78999999999999999876432 3578888999877664 5699999999998
Q ss_pred ccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 187 YWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 187 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
|++ +...+++++.++|+|||++++.......... ........++.+++.+.++ ||++++....
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~---~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP---CTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC---CCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 876 3568999999999999997654322111000 0001123357889999887 9998877543
No 34
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=4.4e-18 Score=150.39 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=125.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCC
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~ 173 (337)
.+.+++.+.+ ++|++|||||||.|.+++.+++++ +++|+|+++|+++.+.+++++.. .+++++..|..+++
T Consensus 61 ~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 61 LDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 3444555666 499999999999999999999998 89999999999999999986432 46888888887764
Q ss_pred CCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhH---hhhhhhhhc---cCCCHHHHHHHHHhCC
Q 019684 174 DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL---SRYFADVWM---LFPKEEEYIEWFQKAG 245 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~l~~aG 245 (337)
+.||.|+|..+++|+.. ...+++.+.++|+|||.+++.....+.... ..+....+. ..++..++.+..+++|
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAG 215 (283)
T ss_pred cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcC
Confidence 34999999999999976 789999999999999999987654433211 111111111 2467899999999999
Q ss_pred CcEEEEEEcCccccccc
Q 019684 246 FKDVQLKRIGPKWYRGV 262 (337)
Q Consensus 246 F~~v~~~~~~~~~~~~~ 262 (337)
|++.+...+.+++.+..
T Consensus 216 ~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 216 FVVLDVESLRPHYARTL 232 (283)
T ss_pred cEEehHhhhcHHHHHHH
Confidence 99999999887665443
No 35
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.75 E-value=1.5e-17 Score=147.01 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=127.3
Q ss_pred HhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH
Q 019684 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (337)
Q Consensus 66 ~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~ 145 (337)
+..+.++.+.+++ ..+..+|...+....+...-..=.|++|||||||+|.++..++.. +...|+|+|+++.
T Consensus 79 l~PWRKGPf~l~g--------i~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l 149 (315)
T PF08003_consen 79 LMPWRKGPFSLFG--------IHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL 149 (315)
T ss_pred hCCcccCCcccCC--------EeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH
Confidence 3445555555544 223345655554443332211127899999999999999999988 3457999999986
Q ss_pred HHHHHH---hhCCCCC-eEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh--
Q 019684 146 QLAKAK---QKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-- 219 (337)
Q Consensus 146 ~~~~a~---~~~~~~~-~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-- 219 (337)
...+.. +...... +.+....++++|. .+.||+|+|..||.|..+|-..|.++...|+|||.+++.+...+...
T Consensus 150 f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~ 228 (315)
T PF08003_consen 150 FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENT 228 (315)
T ss_pred HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCce
Confidence 655433 3332222 3333356688887 67899999999999999999999999999999999998754433211
Q ss_pred ----Hhhhhhhhhc--cCCCHHHHHHHHHhCCCcEEEEEEcCcccccccc
Q 019684 220 ----LSRYFADVWM--LFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (337)
Q Consensus 220 ----~~~~~~~~~~--~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 263 (337)
..++ ..+.. -.+|...+..||+++||+++++..+...-.++.|
T Consensus 229 ~L~P~~rY-a~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR 277 (315)
T PF08003_consen 229 VLVPEDRY-AKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQR 277 (315)
T ss_pred EEccCCcc-cCCCceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhc
Confidence 0111 11111 1368999999999999999999988754443333
No 36
>PRK06202 hypothetical protein; Provisional
Probab=99.75 E-value=3.6e-17 Score=144.26 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=111.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh----CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.++..+++. .++.+++|+|+|+.|++.|+++....++.+...+...++..+++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 36789999999999998888753 23569999999999999999887666788888887777777789999999999
Q ss_pred ccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhh----------------hhhhhccCCCHHHHHHHHHhCCC
Q 019684 185 IEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRY----------------FADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 185 l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+||+++. ..+++++.++++ |.+++.+........... ....+..+++.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 9999886 479999999998 566666554432111000 01223356899999999999 99
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++...-.+.
T Consensus 216 ~~~~~~~~~ 224 (232)
T PRK06202 216 RVERQWPFR 224 (232)
T ss_pred eEEecccee
Confidence 987766554
No 37
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.74 E-value=3.4e-17 Score=135.55 Aligned_cols=143 Identities=24% Similarity=0.268 Sum_probs=112.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeE-EEEcCCCCCC-CCCCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECK-IVEGDAEDLP-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~-~~~~d~~~~~-~~~~~fD~i~~~~~l~ 186 (337)
..|||||||||..-...-.. |+.+|+++|+++.|-+.+.+.+.+ .++. |+.++.+++| ++++++|.|++..+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 46899999999986554433 689999999999999998876543 3455 9999999998 8899999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh-----HhhhhhhhhccCC----CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-----LSRYFADVWMLFP----KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...|+.+.|+++.++|+|||++++.++...... +.......|+... -..+..+.|+++-|+.++.....
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~ 234 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFN 234 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhccc
Confidence 999999999999999999999999988766432 1222223233211 12456688999999998887765
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.73 E-value=9.5e-17 Score=147.37 Aligned_cols=148 Identities=23% Similarity=0.348 Sum_probs=112.0
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 176 (337)
+++...+ .++.+|||||||+|.++..+++.+|+.+++++|. +.+++.++++.. ..+++++.+|+.+.++++ +
T Consensus 141 l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~ 216 (306)
T TIGR02716 141 LLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--A 216 (306)
T ss_pred HHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--C
Confidence 3344444 3678999999999999999999999999999998 789999887643 246899999997655543 7
Q ss_pred cEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch---hH---hhhhhh-----hhccCCCHHHHHHHHHh
Q 019684 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF---WL---SRYFAD-----VWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~---~~~~~~-----~~~~~~~~~~~~~~l~~ 243 (337)
|+|++.+++|++.+. .++++++++.|+|||++++.+...... .. ...... ....+.+.+++.++|++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~ 296 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 296 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHH
Confidence 999999999988765 479999999999999999987533211 11 111110 11124467999999999
Q ss_pred CCCcEEEEE
Q 019684 244 AGFKDVQLK 252 (337)
Q Consensus 244 aGF~~v~~~ 252 (337)
+||+.+++.
T Consensus 297 aGf~~v~~~ 305 (306)
T TIGR02716 297 LGYKDVTMV 305 (306)
T ss_pred cCCCeeEec
Confidence 999988753
No 39
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=3e-17 Score=140.68 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=103.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ++.+...|+...+++ ++||+|++..+++|
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 4579999999999999999987 789999999999999988765433 366777787665554 57999999999998
Q ss_pred cC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 188 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++ +...+++++.++|||||++++.+......... ........+.+++.++++ +|+++......
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~---~~~~~~~~~~~el~~~f~--~~~~~~~~e~~ 171 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC---HMPFSFTFKEDELRQYYA--DWELLKYNEAV 171 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC---CCCcCccCCHHHHHHHhC--CCeEEEeeccc
Confidence 85 34689999999999999976654322111000 011123468899999997 59888877543
No 40
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.71 E-value=4.1e-16 Score=142.26 Aligned_cols=140 Identities=18% Similarity=0.181 Sum_probs=100.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------CCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++... .+++|...|++++ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999999987 78999999999999999987532 3578888888654 467999999
Q ss_pred cccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh--------ccCCCHHHHHHHHHhCCCcEEEE
Q 019684 182 AGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 182 ~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..+++|+++.. .+++.+.+ +.+||.++...+..............+ ..+.+.+++.++|+++||+++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99999987643 46666664 455555443322211111111111111 12357999999999999998877
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
....
T Consensus 298 ~~~~ 301 (315)
T PLN02585 298 EMTA 301 (315)
T ss_pred EEee
Confidence 6654
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=3.3e-16 Score=132.66 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=104.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
+++.+|||+|||+|..+..++...++.+|+++|+|+.+++.|+++... .+++++.+|+.+++. +++||+|++..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 358999999999999999999887889999999999999999876432 358999999988776 67899999875
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+...++++++++|||||++++..... ...++.++.+..|+.+..+..+.
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRD-----------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 4567889999999999999999885432 24557778888899988877765
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.70 E-value=4.4e-16 Score=137.38 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=113.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l 185 (337)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..++++...|+.+.+ ..+++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 36789999999999999998886 6789999999999999987643 234678888886654 345789999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh------hhh-------hhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYF-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|.+++..+++.+.+.|+|||.+++..+........ ... ...+..+.+.+++.++++++||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999886543221100 000 0112346788999999999999999886
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 205 ~~~ 207 (233)
T PRK05134 205 GLH 207 (233)
T ss_pred eEE
Confidence 543
No 43
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.70 E-value=2.6e-17 Score=153.22 Aligned_cols=173 Identities=19% Similarity=0.118 Sum_probs=133.8
Q ss_pred CCCchHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEE
Q 019684 60 PASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTI 139 (337)
Q Consensus 60 ~~~~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~g 139 (337)
+.....+.+|..+..+||+....+....+.|++.++.+.+.++.... ++.+|||+|||+|.++..++...|+.++++
T Consensus 204 RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~a~VtA 280 (423)
T PRK14966 204 RRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPDAFVRA 280 (423)
T ss_pred HHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCCCEEEE
Confidence 33445678888898999998888888899999999999998877643 457999999999999999998888899999
Q ss_pred EeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCC-CCCCccEEEeccccc-------------cc--------CC----H
Q 019684 140 LDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPF-PTDYADRYVSAGSIE-------------YW--------PD----P 191 (337)
Q Consensus 140 vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~-------------~~--------~~----~ 191 (337)
+|+|+.+++.|+++... .+++++++|+.+... ..++||+|+++--.. |- .| .
T Consensus 281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~y 360 (423)
T PRK14966 281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCI 360 (423)
T ss_pred EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHH
Confidence 99999999999988543 358999999855332 235799999954211 00 01 2
Q ss_pred HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 192 QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 192 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.++++++.+.|+|||.+++.... ...+.+.+++++.||..+++.
T Consensus 361 r~Ii~~a~~~LkpgG~lilEiG~-----------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 361 RTLAQGAPDRLAEGGFLLLEHGF-----------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHHHhcCCCcEEEEEECc-----------------cHHHHHHHHHHHCCCcEEEEE
Confidence 36778888999999998765321 135678899999999876653
No 44
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.69 E-value=4.9e-16 Score=135.83 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=109.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++.. +.+++|+|+|+.+++.|+++... .++.+.++|+.+++ ++||+|++..++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHH
Confidence 6789999999999999999887 67999999999999999987532 36899999998765 679999999999
Q ss_pred cccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh--------ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|++. ...+++++.+++++++.+.+.... ............+ ..+.+.+++.++++++||+++......
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFAPKT-AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 98864 457899999999877666554322 1111111111111 134688999999999999999988766
Q ss_pred ccc
Q 019684 256 PKW 258 (337)
Q Consensus 256 ~~~ 258 (337)
...
T Consensus 209 ~~~ 211 (219)
T TIGR02021 209 TGF 211 (219)
T ss_pred ccc
Confidence 433
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=132.41 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=113.5
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEE
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
+++...+.. ...+|.|+|||+|..+..+++++|+..++|+|.|++|++.|+++. ++++|..+|+.++. ++..+|++
T Consensus 21 dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl--p~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 21 DLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL--PDATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred HHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC--CCCceecccHhhcC-CCCccchh
Confidence 345555553 668999999999999999999999999999999999999998876 58899999998854 45679999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----------------hccCCCHHHHHHHHHh
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----------------WMLFPKEEEYIEWFQK 243 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~ 243 (337)
+++.++++++|..++|.++...|.|||+|.+.-+..-.......+.+. .....++..+.++|..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAP 176 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCc
Confidence 999999999999999999999999999999986644322211111111 1123567777888877
Q ss_pred CCCc
Q 019684 244 AGFK 247 (337)
Q Consensus 244 aGF~ 247 (337)
.+=+
T Consensus 177 ~~~r 180 (257)
T COG4106 177 LACR 180 (257)
T ss_pred ccce
Confidence 6544
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.69 E-value=2.7e-16 Score=147.76 Aligned_cols=157 Identities=19% Similarity=0.102 Sum_probs=118.1
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEE
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
+++.+.+ .++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++....++++...|..++ +++||.|+
T Consensus 159 l~~~l~l-~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Iv 233 (383)
T PRK11705 159 ICRKLQL-KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIV 233 (383)
T ss_pred HHHHhCC-CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEE
Confidence 3344444 378899999999999999998875 679999999999999999987655688888888765 46799999
Q ss_pred ecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchh--Hhhhhhhh---hccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 181 SAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFW--LSRYFADV---WMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 181 ~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+..+++|+.+ ...+++++.++|||||++++......... ...+.... ...+.+.+++.+.++ .||++.++..
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 9999999854 46899999999999999999765433210 01111110 012457788888766 5999999999
Q ss_pred cCcccccccc
Q 019684 254 IGPKWYRGVR 263 (337)
Q Consensus 254 ~~~~~~~~~~ 263 (337)
++.++.+...
T Consensus 313 ~~~hy~~TL~ 322 (383)
T PRK11705 313 FGADYDRTLM 322 (383)
T ss_pred ChhhHHHHHH
Confidence 8876654443
No 47
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=6.4e-16 Score=128.51 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=114.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-CCC-CCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DLP-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~i~~~~~l~ 186 (337)
+++.+|||+|||.|.++..|.+. .+++..|+|++++.+..+.+ .++.++++|++ .+. |++++||.|+++.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 48999999999999999999886 58999999999999988886 46789999995 454 8999999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh-----------------hhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-----------------FADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
++.+++.+|+++.|+ |...+++-+++..+..+.. +.....++.|..+++++.++.|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 999999999999776 6677777666543322211 11111245689999999999999999
Q ss_pred EEEEcCccc
Q 019684 250 QLKRIGPKW 258 (337)
Q Consensus 250 ~~~~~~~~~ 258 (337)
+...+...+
T Consensus 164 ~~~~~~~~~ 172 (193)
T PF07021_consen 164 ERVFLDGGR 172 (193)
T ss_pred EEEEEcCCC
Confidence 998887443
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=7.5e-16 Score=140.00 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=103.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++...|+...++ +++||+|++..+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 3469999999999999999987 78999999999999999876532 257788888876555 567999999999998
Q ss_pred cC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 188 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++ +...+++++.++|+|||++++.......... ........++.+++.+.++. |+++....
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---~~~p~~~~~~~~el~~~~~~--~~i~~~~e 259 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---CPMPFSFTFKEGELKDYYQD--WEIVKYNE 259 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---CCCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence 86 4468999999999999997765432211100 01112334688999999974 98888754
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=1.9e-15 Score=128.86 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=107.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 170 (337)
.+.++..++..+.+. ++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++... .+++++.+|+.. +
T Consensus 16 ~~~~r~~~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~ 93 (187)
T PRK08287 16 KEEVRALALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E 93 (187)
T ss_pred hHHHHHHHHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h
Confidence 344455455555553 77899999999999999999988889999999999999999876432 468888888743 3
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
+ .++||+|++..... ....+++++.+.|+|||++++..... .+.+++.++++++||+.++
T Consensus 94 ~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 94 L-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred c-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------hhHHHHHHHHHHCCCCcce
Confidence 3 35799999876544 35678999999999999998864321 1356778899999998877
Q ss_pred EEEcC
Q 019684 251 LKRIG 255 (337)
Q Consensus 251 ~~~~~ 255 (337)
+..+.
T Consensus 154 ~~~~~ 158 (187)
T PRK08287 154 CVQLQ 158 (187)
T ss_pred EEEEE
Confidence 75554
No 50
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.67 E-value=2.2e-15 Score=129.22 Aligned_cols=138 Identities=13% Similarity=0.210 Sum_probs=104.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C-CCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. .+.+++|+|+|+.+++.+++ .+++++.+|+.+ + ++++++||+|++..+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 5689999999999999988776 36788999999999999875 357888899865 4 366788999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-----------------hhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++++..+++++.+.+++ +++..+......... +.......+.+.+++.++++++||++++
T Consensus 88 ~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 99999999999887654 444433221111000 0011112467899999999999999999
Q ss_pred EEEcC
Q 019684 251 LKRIG 255 (337)
Q Consensus 251 ~~~~~ 255 (337)
.....
T Consensus 165 ~~~~~ 169 (194)
T TIGR02081 165 RAAFD 169 (194)
T ss_pred EEEec
Confidence 88774
No 51
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.67 E-value=7.1e-16 Score=139.91 Aligned_cols=170 Identities=22% Similarity=0.246 Sum_probs=129.9
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+||+....+....+.|++.++.+....+.......+..+|||+|||+|.++..++...++.+|+++|+|
T Consensus 68 ~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis 147 (284)
T TIGR00536 68 GVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDIS 147 (284)
T ss_pred CCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECC
Confidence 36788888888898887777788888999999998887765422223369999999999999999999888999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEec-------------ccccccC------------CHHHH
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSA-------------GSIEYWP------------DPQRG 194 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~-------------~~l~~~~------------~~~~~ 194 (337)
+.+++.|+++... .+++++.+|+.+ ++++.+||+|+++ .+..|.+ ....+
T Consensus 148 ~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~i 226 (284)
T TIGR00536 148 PDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQI 226 (284)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHH
Confidence 9999999987532 348999999865 3444479999995 2333333 23578
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH-hCCCcEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ-KAGFKDVQL 251 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGF~~v~~ 251 (337)
++++.++|+|||++++..... ..+.+.+++. +.||..+++
T Consensus 227 i~~a~~~L~~gG~l~~e~g~~-----------------q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 227 IELAPDYLKPNGFLVCEIGNW-----------------QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHhcCCCceeEE
Confidence 999999999999998764321 2345667777 478976655
No 52
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.67 E-value=9.5e-17 Score=155.96 Aligned_cols=174 Identities=21% Similarity=0.210 Sum_probs=134.6
Q ss_pred CCCchHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCC-----------------------CCCCCEEEE
Q 019684 60 PASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL-----------------------SNRNMLVVD 116 (337)
Q Consensus 60 ~~~~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~VLD 116 (337)
+.....+.+|..+..+||+....+...+++|++.++.+++.++....- ..++.+|||
T Consensus 65 rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD 144 (506)
T PRK01544 65 RRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILE 144 (506)
T ss_pred HHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEE
Confidence 334467899999999999999999999999999999999988754320 113468999
Q ss_pred EcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecc---------
Q 019684 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAG--------- 183 (337)
Q Consensus 117 iGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~--------- 183 (337)
+|||+|.++..++...|+.+|+++|+|+.+++.|+++... .+++++.+|+.+ .+.+++||+|+++-
T Consensus 145 lG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~ 223 (506)
T PRK01544 145 LGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKS 223 (506)
T ss_pred ccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhh
Confidence 9999999999999888889999999999999999987532 358889999754 23356799999942
Q ss_pred -----cccccCC------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 184 -----SIEYWPD------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 184 -----~l~~~~~------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+..|.+. ...+++++.++|+|||.+++... +...+.+.+++++.||
T Consensus 224 ~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-----------------~~q~~~v~~~~~~~g~ 286 (506)
T PRK01544 224 EMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-----------------FKQEEAVTQIFLDHGY 286 (506)
T ss_pred hcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-----------------CchHHHHHHHHHhcCC
Confidence 1122211 23578889999999999987522 1235678889999999
Q ss_pred cEEEE
Q 019684 247 KDVQL 251 (337)
Q Consensus 247 ~~v~~ 251 (337)
..+.+
T Consensus 287 ~~~~~ 291 (506)
T PRK01544 287 NIESV 291 (506)
T ss_pred CceEE
Confidence 87655
No 53
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=8.5e-16 Score=127.48 Aligned_cols=118 Identities=29% Similarity=0.295 Sum_probs=95.6
Q ss_pred EEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 138 TILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 138 ~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+|+|+|++|++.|+++.. ..+++++++|++++|+++++||+|++..++++++|+.+++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999976543 13689999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCchhHh-------------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 212 GPVYPTFWLS-------------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 212 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+...+..... .+.......+.+.+++.++|+++||+.+......
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 7665422111 0111112356799999999999999998877654
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=1.1e-15 Score=129.22 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=97.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++.. ..+++++++|+++++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 4789999999999999999887778899999999999988876532 246899999998764 356899999875
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH---HHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI---EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~aGF~~v~~~~~~ 255 (337)
+.+...+++.+.++|+|||.+++..... ...++. +.+...||+.++...+.
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~-----------------~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKK-----------------YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCC-----------------cHHHHHHHHHhhhhcCceEeeccccC
Confidence 3456678899999999999999874321 223333 44444899988887765
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.67 E-value=1.8e-15 Score=132.63 Aligned_cols=144 Identities=26% Similarity=0.309 Sum_probs=112.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--C-CeEEEEcCCCCCCCC-CCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K-ECKIVEGDAEDLPFP-TDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~-~~~~~~~d~~~~~~~-~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... . ++++...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999988876 56899999999999999886432 2 578888888766543 3689999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh-Hhh-----hh-------hhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSR-----YF-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~-----~~-------~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|..++..+++++.++|+|||.+++......... ... .. ...+..+.+.+++.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 9999999999999999999999998765433111 000 00 0012235688899999999999999887
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 203 ~~~ 205 (224)
T TIGR01983 203 GLV 205 (224)
T ss_pred eEE
Confidence 543
No 56
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.66 E-value=8.4e-16 Score=139.10 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=129.9
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+|++....+....+.+++.++.+....+.......++.+|||+|||+|.++..++...++.+++|+|+|
T Consensus 75 ~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 75 RIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred CCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 45788889999999888888888889998888887776653211124579999999999999999998888999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecc------cc-------cccCC------------HHHH
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAG------SI-------EYWPD------------PQRG 194 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~------~l-------~~~~~------------~~~~ 194 (337)
+.+++.|+++... .+++++.+|+.+ ++++++||+|+++- .+ .|.+. ...+
T Consensus 155 ~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~i 233 (284)
T TIGR03533 155 PDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRI 233 (284)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHH
Confidence 9999999987532 358999999854 23455799999851 11 11111 2467
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++++.++|+|||++++.... +.+.+.+++.++||.......
T Consensus 234 l~~a~~~L~~gG~l~~e~g~------------------~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 234 LAEAADHLNENGVLVVEVGN------------------SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred HHHHHHhcCCCCEEEEEECc------------------CHHHHHHHHHhCCCceeeecC
Confidence 89999999999999875431 335677888889987655444
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=3e-17 Score=125.04 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=63.6
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC--CCCCCccEEEecccccccC
Q 019684 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~~~ 189 (337)
||||||+|.++..+.+.+|..+++|+|+|+.+++.++++... .+......+..+.. ...++||+|++.++++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999999999999999999999888766432 22334443333322 1225899999999999999
Q ss_pred CHHHHHHHHHHhccCCCEE
Q 019684 190 DPQRGIREAYRVLKLGGKA 208 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l 208 (337)
++..++++++++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 58
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.65 E-value=2.6e-15 Score=129.37 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
+++.+|||||||+|.++..+++..++.+++|+|+|+.+++.|+++.. ++.+.++|+.+ ++++++||+|++..+++|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--NINIIQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--CCcEEEeeccC-CCCCCCEEEEEECChhhhC
Confidence 36789999999999999999988788999999999999999998753 56788899887 8888899999999999999
Q ss_pred CC--HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 189 PD--PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 189 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+. ..++++++.+++ ++.+++.+...
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 52 357899999987 56777776543
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.65 E-value=3.4e-16 Score=119.69 Aligned_cols=93 Identities=30% Similarity=0.424 Sum_probs=77.8
Q ss_pred EEEEcCcccHHHHHHHhhC---CCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEec-ccccc
Q 019684 114 VVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSA-GSIEY 187 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~~ 187 (337)
|||+|||+|..+..+.+.+ |..+++|+|+|+++++.++++.. ..+++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999885 34899999999999999998873 247899999999988888899999995 44999
Q ss_pred cCCH--HHHHHHHHHhccCCC
Q 019684 188 WPDP--QRGIREAYRVLKLGG 206 (337)
Q Consensus 188 ~~~~--~~~l~~~~~~LkpgG 206 (337)
+.+. .++++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8754 579999999999998
No 60
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.64 E-value=2.5e-15 Score=133.95 Aligned_cols=166 Identities=28% Similarity=0.306 Sum_probs=120.4
Q ss_pred hhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHH
Q 019684 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 147 (337)
Q Consensus 68 ~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~ 147 (337)
++..+...|++.........+.+++.++.+...++.... ..+.+|||+|||+|.++..++...|..+++|+|+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~ 124 (251)
T TIGR03534 47 AYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL 124 (251)
T ss_pred HHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 333333444444444444455666777777777766553 345799999999999999999988889999999999999
Q ss_pred HHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccccc------cC--------------------CHHHHHHHH
Q 019684 148 AKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIEY------WP--------------------DPQRGIREA 198 (337)
Q Consensus 148 ~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~------~~--------------------~~~~~l~~~ 198 (337)
+.++++... .++.++.+|+.+ ++++++||+|+++-.... +. ....+++++
T Consensus 125 ~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~ 203 (251)
T TIGR03534 125 AVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQA 203 (251)
T ss_pred HHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHH
Confidence 999977432 358899999966 455678999998532221 11 123678999
Q ss_pred HHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 199 YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 199 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
.++|+|||.+++... +...+++.++|+++||+.+++..
T Consensus 204 ~~~L~~gG~~~~~~~-----------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 204 PRLLKPGGWLLLEIG-----------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred HHhcccCCEEEEEEC-----------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 999999999988532 12356788999999999777644
No 61
>PRK06922 hypothetical protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=148.69 Aligned_cols=107 Identities=26% Similarity=0.393 Sum_probs=92.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC--CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|..+..+++.+|+.+++|+|+|+.|++.|+++... .++.++++|+.+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999999999999888999999999999999999987533 35778899998777 778899999999998
Q ss_pred cccC-------------CHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 186 EYWP-------------DPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 186 ~~~~-------------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
|++. +..+++++++++|||||++++.+...+
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 8752 346899999999999999999876433
No 62
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=5.1e-15 Score=133.81 Aligned_cols=168 Identities=28% Similarity=0.264 Sum_probs=126.0
Q ss_pred HhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH
Q 019684 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (337)
Q Consensus 66 ~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~ 145 (337)
+.++..+...||+....+....+.+++.++.+.+.++..... .++.+|||+|||+|.++..++...|..+++|+|+|+.
T Consensus 65 p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~ 143 (275)
T PRK09328 65 PLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLL-KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE 143 (275)
T ss_pred CHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 455556666677765556666788888889888887754433 3678999999999999999999988899999999999
Q ss_pred HHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc--------------cc------------CCHHHHHH
Q 019684 146 QLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE--------------YW------------PDPQRGIR 196 (337)
Q Consensus 146 ~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~--------------~~------------~~~~~~l~ 196 (337)
+++.++++.. ..++.++.+|+.+ ++.+++||+|+++--.. |. .....+++
T Consensus 144 ~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~ 222 (275)
T PRK09328 144 ALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIE 222 (275)
T ss_pred HHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHH
Confidence 9999998754 3578999999855 23356899999852211 11 11246888
Q ss_pred HHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 197 EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 197 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++.++|+|||++++.... ...+.+.+++++.||..++..
T Consensus 223 ~~~~~Lk~gG~l~~e~g~-----------------~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 223 QAPRYLKPGGWLLLEIGY-----------------DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred HHHHhcccCCEEEEEECc-----------------hHHHHHHHHHHhCCCceeEEe
Confidence 999999999999884311 124568889999999866663
No 63
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.64 E-value=2.1e-16 Score=132.93 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=123.8
Q ss_pred HhhhhhHhhhcccCCC--cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh
Q 019684 76 FYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 76 ~y~~~~~~y~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~ 153 (337)
.|+.+++.+++.+-.. .-...+..+.+..+... +-.++||+|||||..+..+... ..+++|+|+|.+|++.|.++
T Consensus 90 LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 90 LFDQYAERFDHILVDKLGYSVPELLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCC-ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 4455555555543321 22344455555555443 4789999999999999999888 67899999999999999987
Q ss_pred CCCCCeEEEEcCCCC-CC-CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccC
Q 019684 154 EPLKECKIVEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (337)
Q Consensus 154 ~~~~~~~~~~~d~~~-~~-~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (337)
..... ..++|+.. ++ ..++.||+|++..|+.++.+.+.++......|+|||.+.|+....+...- -.....-..-
T Consensus 167 g~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~RyA 243 (287)
T COG4976 167 GLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRYA 243 (287)
T ss_pred cchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhhc
Confidence 54432 23333321 11 34567999999999999999999999999999999999998544433211 0111111122
Q ss_pred CCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 232 PKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 232 ~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
.+...+..+++..||++++++.+.-+
T Consensus 244 H~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 244 HSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred cchHHHHHHHHhcCceEEEeecccch
Confidence 46677889999999999999988733
No 64
>PRK04266 fibrillarin; Provisional
Probab=99.63 E-value=9.5e-15 Score=127.48 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=98.7
Q ss_pred cCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCC----CCCCCCccEE
Q 019684 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL----PFPTDYADRY 179 (337)
Q Consensus 105 ~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~----~~~~~~fD~i 179 (337)
+.+ .++.+|||+|||+|.++..+++..+..+|+++|+++.|++.+.+++.. .|+.++.+|+... ++. ++||+|
T Consensus 68 l~i-~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 68 FPI-KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCC-CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 444 378999999999999999999987667999999999999877665432 5789999998642 223 459999
Q ss_pred EecccccccCCH---HHHHHHHHHhccCCCEEEEE------cCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 180 VSAGSIEYWPDP---QRGIREAYRVLKLGGKACII------GPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 180 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++. ..++ ..+++++.++|||||++++. +...... . ..++..++++++||+.++
T Consensus 146 ~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~---~----------~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 146 YQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPK---E----------IFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHH---H----------HHHHHHHHHHHcCCeEEE
Confidence 853 3333 34689999999999999994 2221110 0 113455999999999999
Q ss_pred EEEcCc
Q 019684 251 LKRIGP 256 (337)
Q Consensus 251 ~~~~~~ 256 (337)
...+.+
T Consensus 208 ~~~l~p 213 (226)
T PRK04266 208 VVDLEP 213 (226)
T ss_pred EEcCCC
Confidence 988764
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.63 E-value=1.7e-15 Score=130.62 Aligned_cols=124 Identities=22% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCC-CCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDA-EDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~-~~~~--~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.++++.. ..++.++++|+ +.++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999999999998888899999999999999987642 25789999999 6665 6678899999876
Q ss_pred cccccC--------CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 184 SIEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 184 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
...+.. ....+++++.++|||||.+++...... ....+.+.+++.|+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------------HHHHHHHHHHhCccccc
Confidence 543322 135799999999999999999764321 13457778888998644
No 66
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.63 E-value=4.9e-15 Score=131.71 Aligned_cols=173 Identities=21% Similarity=0.162 Sum_probs=129.8
Q ss_pred chHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC
Q 019684 63 QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (337)
Q Consensus 63 ~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 142 (337)
...+.+|..+..+|++....+....+.++..++.+.+.++........+.+|||+|||+|.++..++...++.+++++|+
T Consensus 39 ~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi 118 (251)
T TIGR03704 39 AGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADI 118 (251)
T ss_pred cCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEEC
Confidence 45678889998888887777777778888888888888776543222346899999999999999998888889999999
Q ss_pred CHHHHHHHHhhCCCCCeEEEEcCCCCC-CC-CCCCccEEEeccccc--------------ccC--------C----HHHH
Q 019684 143 SPHQLAKAKQKEPLKECKIVEGDAEDL-PF-PTDYADRYVSAGSIE--------------YWP--------D----PQRG 194 (337)
Q Consensus 143 s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~-~~~~fD~i~~~~~l~--------------~~~--------~----~~~~ 194 (337)
|+.+++.++++....+.+++++|+.+. +. ..++||+|+++--.. |.+ | ...+
T Consensus 119 s~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i 198 (251)
T TIGR03704 119 DPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRV 198 (251)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHH
Confidence 999999999987655578899998652 21 135799999863211 110 1 2367
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++.+.++|+|||++++..... ..+++.++|++.||......
T Consensus 199 ~~~a~~~L~~gG~l~l~~~~~-----------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 199 AAGAPDWLAPGGHLLVETSER-----------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHhcCCCCEEEEEECcc-----------------hHHHHHHHHHHCCCCceeeE
Confidence 888889999999999874321 23567889999999754443
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=1.8e-14 Score=121.95 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++... .+++++.+|+.+.. .++||+|+++..+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 56789999999999999999884 3999999999999999987532 35788889986543 358999999987776
Q ss_pred cCC---------------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 188 WPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 188 ~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
.++ ...+++++.++|||||++++...... ...++.+.|++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------GEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------ChHHHHHHHHhCCC
Confidence 643 24679999999999999998765432 25678889999999
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
....+...+
T Consensus 159 ~~~~~~~~~ 167 (179)
T TIGR00537 159 RYEIVAERG 167 (179)
T ss_pred eEEEEEEee
Confidence 988877665
No 68
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.63 E-value=2e-15 Score=135.20 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhCC-----CCeEEEEeCCHHHHHHHHhhCC-------------------------
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEP------------------------- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~------------------------- 155 (337)
++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|++..-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5556666543 4789999999999999997531
Q ss_pred -----CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEc
Q 019684 156 -----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 156 -----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+++|.++|+.+.+.++++||+|+|.++++|++++ .+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135899999998877777889999999999999755 479999999999999999863
No 69
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=5.5e-15 Score=135.04 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=128.6
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+|++....+....+.|++.++.+....+....-..+..+|||+|||+|.++..++...|+.+|+++|+|
T Consensus 87 ~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis 166 (307)
T PRK11805 87 RIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS 166 (307)
T ss_pred CccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence 56788999999999888888888888998888887776543211112368999999999999999999888999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEeccc-------------ccccCC------------HHHH
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGS-------------IEYWPD------------PQRG 194 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~-------------l~~~~~------------~~~~ 194 (337)
+.+++.|+++... .+++++++|+.+ .+++++||+|+++-- ..|.+. ...+
T Consensus 167 ~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i 245 (307)
T PRK11805 167 PDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRI 245 (307)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHH
Confidence 9999999988542 358999999854 233457999998611 112221 2478
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++++.++|+|||++++.... +.+.+.+++.+.||........
T Consensus 246 ~~~a~~~L~pgG~l~~E~g~------------------~~~~~~~~~~~~~~~~~~~~~~ 287 (307)
T PRK11805 246 LAEAPDYLTEDGVLVVEVGN------------------SRVHLEEAYPDVPFTWLEFENG 287 (307)
T ss_pred HHHHHHhcCCCCEEEEEECc------------------CHHHHHHHHhhCCCEEEEecCC
Confidence 99999999999999885321 2345667788888876555443
No 70
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=3.3e-15 Score=145.32 Aligned_cols=139 Identities=20% Similarity=0.189 Sum_probs=108.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCC--CCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAE--DLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~--~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||||||+|.++..+++. ..+|+|+|+|+.+++.+++... ..+++++++|+. .+++++++||+|++..+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 5679999999999999999987 5699999999999998875432 357899999995 4567788999999999999
Q ss_pred ccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch-hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 187 YWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 187 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
|+++. ..+++++.++|||||++++.+...... ...... ....+.+...|.+++.++||...+..
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN--NPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC--CCCeecChHHHHHHHHHheeccCCCC
Confidence 99874 689999999999999999987653321 011100 11123467899999999999876543
No 71
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.61 E-value=1.3e-14 Score=125.59 Aligned_cols=137 Identities=14% Similarity=0.049 Sum_probs=102.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------CCCCeEEEEcCCCCCCCC-C
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-T 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------~~~~~~~~~~d~~~~~~~-~ 173 (337)
++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.. ...+++++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 6689999999999999999998 999999999999999864321 124588999999876642 3
Q ss_pred CCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+.||.|+-..+++|++.. ...++.+.++|||||++++.......... .. .....+.+++.+++.. +|.+..+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----~g-pp~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----AG-PPFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----CC-cCCCCCHHHHHHHhcC-CceEEEE
Confidence 579999999999999644 46899999999999987776543321110 00 1124688999998863 5665555
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
...
T Consensus 186 ~~~ 188 (213)
T TIGR03840 186 ESR 188 (213)
T ss_pred eec
Confidence 443
No 72
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.61 E-value=1.2e-14 Score=127.98 Aligned_cols=143 Identities=20% Similarity=0.290 Sum_probs=103.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+..+|+.. .+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchh
Confidence 6789999999999999999987 56899999999999999987432 368889888533 35789999999999
Q ss_pred cccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh--------hccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|+++. ..+++++.+.+++++.+.+ .+.............. ...+.+.+++.++++++||++.+...+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 998754 4788888887754444333 2211111111111111 1124578899999999999999998876
Q ss_pred ccc
Q 019684 256 PKW 258 (337)
Q Consensus 256 ~~~ 258 (337)
..+
T Consensus 217 ~~~ 219 (230)
T PRK07580 217 SGF 219 (230)
T ss_pred chh
Confidence 443
No 73
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.60 E-value=1.2e-14 Score=131.18 Aligned_cols=131 Identities=20% Similarity=0.273 Sum_probs=96.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC---CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+..+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~~- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYAP- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecCC-
Confidence 5578999999999999999887653 47999999999999998765 46889999999999999999999986541
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-hhh-hhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-RYF-ADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..++++.|+|||||++++..+........ ... .+........ ....||+.++.+.+.
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~------~~~~gF~~~~~~~~~ 220 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEA------EQLEGFELQHSERLA 220 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccch------hhccCCCeeeEEEEE
Confidence 24688999999999999987664432211 111 1111111111 134699988777764
No 74
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=1e-14 Score=123.99 Aligned_cols=166 Identities=22% Similarity=0.188 Sum_probs=122.0
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC--CCeEEE
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL--KECKIV 162 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~--~~~~~~ 162 (337)
++..++|...-...++....- ...+|||||||.|.....+.+..+. ..++++|.||.+++..+++... .++...
T Consensus 50 FfkdR~wL~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF 127 (264)
T ss_pred ccchhHHHHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence 444566655444443333321 2238999999999999999988766 8999999999999999987543 345445
Q ss_pred EcCCCC----CCCCCCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh---------
Q 019684 163 EGDAED----LPFPTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------- 227 (337)
Q Consensus 163 ~~d~~~----~~~~~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------- 227 (337)
+.|+.. -+...+++|.|++.++|..++- .+.++.+++++|||||.|++-+....+....++....
T Consensus 128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 556532 2466789999999999988753 3689999999999999999998876655444332211
Q ss_pred ----hccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 228 ----WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 228 ----~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
...|++.+++.++++++||..++....
T Consensus 208 gDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 208 GDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred cCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 114689999999999999998776544
No 75
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.8e-14 Score=129.72 Aligned_cols=171 Identities=23% Similarity=0.231 Sum_probs=128.7
Q ss_pred CchHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEe
Q 019684 62 SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141 (337)
Q Consensus 62 ~~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD 141 (337)
....+.+|..+..+|++....+.+.++.|++.++.+.+.++...... +.+|||+|||||..++.++...|.++|+|+|
T Consensus 64 ~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~--~~~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 64 AEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL--DKRILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred HCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhc--CCcEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 34556778888889999999999999999999999999876333322 1279999999999999999999889999999
Q ss_pred CCHHHHHHHHhhCCCCC---eEEEEcCCCCCCCCCCCccEEEecccc--c---cc-C-----C--------------HHH
Q 019684 142 QSPHQLAKAKQKEPLKE---CKIVEGDAEDLPFPTDYADRYVSAGSI--E---YW-P-----D--------------PQR 193 (337)
Q Consensus 142 ~s~~~~~~a~~~~~~~~---~~~~~~d~~~~~~~~~~fD~i~~~~~l--~---~~-~-----~--------------~~~ 193 (337)
+|+.+++.|++|+...+ +.++.+|..+ +.. ++||+|+++--. . +. + + ..+
T Consensus 142 is~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~ 219 (280)
T COG2890 142 ISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRR 219 (280)
T ss_pred CCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHH
Confidence 99999999999876544 4556666644 222 379999995211 1 11 1 1 137
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC-CcEEEEEE
Q 019684 194 GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG-FKDVQLKR 253 (337)
Q Consensus 194 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~v~~~~ 253 (337)
++.++.+.|+|||.+++.... ...+.+.+++.+.| |..+....
T Consensus 220 i~~~a~~~l~~~g~l~le~g~-----------------~q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 220 ILGEAPDILKPGGVLILEIGL-----------------TQGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred HHHhhHHHcCCCcEEEEEECC-----------------CcHHHHHHHHHhcCCceEEEEEe
Confidence 889999999999999876432 24577889999999 56554443
No 76
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.58 E-value=3.9e-14 Score=118.11 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=99.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.-.++||+|||.|.++..|+.. ..+++++|+|+.+++.|+++... +++++++.|+.+. .++++||+|+++.+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 4578999999999999999999 56899999999999999998765 7899999999764 356789999999999999
Q ss_pred CCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 189 PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 189 ~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.+. ..+++.+...|+|||.+++.... ......|-+....+.+.++|.+. |..|+....
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-------d~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHAR-------DANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE--------HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEec-------CCcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 864 46899999999999999986542 11223344445788899999886 555555554
No 77
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=3.7e-14 Score=112.17 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=86.4
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC-CCCCCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LPFPTD 174 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~-~~~~~~ 174 (337)
..++..... .++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++.. ..+++++.+|+.. ++...+
T Consensus 9 ~~~~~~~~~-~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 9 ALTLSKLRL-RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 334444443 25679999999999999999998888899999999999999987642 2468888888764 333345
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+||.|++..... ...++++++.+.|+|||++++..
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 799999976544 34689999999999999998863
No 78
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=1e-14 Score=124.98 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~---~~~~~fD~i~~~~ 183 (337)
...+|||||||+|.++..+++.+|..+++|+|+++.+++.|+++.. ..|++++++|+.+++ ++++++|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999987643 247999999996543 4456899999876
Q ss_pred cccccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 184 SIEYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 184 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
...+.... ..+++++.++|||||.+++....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 54433221 46899999999999999987643
No 79
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=1.1e-14 Score=122.78 Aligned_cols=136 Identities=20% Similarity=0.241 Sum_probs=95.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.++||+|||.|..+..|++. |.+|+++|.|+..++.+.+.+. .-.++....|+.+..++ +.||+|++..+++|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 5689999999999999999999 9999999999999988876543 23488899999877665 56999999999998
Q ss_pred cCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 188 WPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 188 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++.. ..+++.+...++|||++++.........-.. ......+.+.++.+.+. ||+++...+
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~---~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP---SPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S---S--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC---CCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 8643 5799999999999999888543211110000 01112345677877776 688877643
No 80
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=6.2e-14 Score=120.55 Aligned_cols=141 Identities=19% Similarity=0.334 Sum_probs=105.3
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAE 167 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~ 167 (337)
+.++++...+...... ++.+|||+|||+|.++..++... +..+|+++|+++.+++.++++.. ..++.++.+|+.
T Consensus 24 t~~~~r~~~l~~l~~~-~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 24 TKEEIRALALSKLRLR-KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CHHHHHHHHHHHcCCC-CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 3355655556666654 78999999999999999988764 45799999999999999987642 246888999986
Q ss_pred CC-CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 168 DL-PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 168 ~~-~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+. +..++.||.|++.. ...+...+++++.++|+|||++++..... .+..+..+.|++.||
T Consensus 103 ~~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 103 EILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL----------------ETVNNALSALENIGF 163 (198)
T ss_pred hhHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------------HHHHHHHHHHHHcCC
Confidence 53 33345799999854 34567889999999999999998743321 134677889999999
Q ss_pred cEEEEEEc
Q 019684 247 KDVQLKRI 254 (337)
Q Consensus 247 ~~v~~~~~ 254 (337)
. .++..+
T Consensus 164 ~-~~~~~~ 170 (198)
T PRK00377 164 N-LEITEV 170 (198)
T ss_pred C-eEEEEE
Confidence 4 444443
No 81
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=1.8e-14 Score=124.50 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=85.5
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~ 171 (337)
+...+++.+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.++++... .+++++.+|+.+...
T Consensus 60 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 60 MVAMMCELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHhcCC-CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34444444444 3678999999999999999888753 46999999999999999876432 348899999976544
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..++||+|++..++++++ +++.+.|+|||++++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 556899999998887765 4688999999999875
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.55 E-value=2.2e-13 Score=112.66 Aligned_cols=139 Identities=21% Similarity=0.252 Sum_probs=110.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC-
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED- 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~- 168 (337)
..++++...+..+... ++++++|||||||..++.++...|..+|+++|-++++++..++|.. -+|++.+.+|+.+
T Consensus 18 TK~EIRal~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 4566777777777764 8899999999999999999988889999999999999999887743 4789999999954
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC-c
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF-K 247 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF-~ 247 (337)
++-.+ ++|.|+.... .+.+.+++.+...|||||++++.....+ +.....+++++.|| +
T Consensus 97 L~~~~-~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 97 LPDLP-SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------TLAKALEALEQLGGRE 155 (187)
T ss_pred hcCCC-CCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------HHHHHHHHHHHcCCce
Confidence 44222 6999998876 3567899999999999999998644322 34566789999999 5
Q ss_pred EEEEEE
Q 019684 248 DVQLKR 253 (337)
Q Consensus 248 ~v~~~~ 253 (337)
++++..
T Consensus 156 i~~v~i 161 (187)
T COG2242 156 IVQVQI 161 (187)
T ss_pred EEEEEe
Confidence 555543
No 83
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.55 E-value=2.6e-14 Score=119.73 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=115.0
Q ss_pred HHhhhhhHhhhcccCCCcchHHHHHHhccccCCCC-CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh
Q 019684 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~ 153 (337)
.|++..+.-|..-..--....++....+..+.++. .+.-|||||||+|..+..+.+. +...+|+|+|+.|++.|.++
T Consensus 14 fYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 14 FYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER 91 (270)
T ss_pred eechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh
Confidence 34445555665433223445556665566555432 3678999999999999988877 78999999999999999974
Q ss_pred CCCCCeEEEEcCC-CCCCCCCCCccEEEecccccccCC-------HH----HHHHHHHHhccCCCEEEEEcCCCCchhHh
Q 019684 154 EPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPD-------PQ----RGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (337)
Q Consensus 154 ~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l~~~~~-------~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 221 (337)
.-. -.++.+|+ +-+||..++||.+++...+.++-+ +. .++..++.+|++|++.++.-......
T Consensus 92 e~e--gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~--- 166 (270)
T KOG1541|consen 92 ELE--GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA--- 166 (270)
T ss_pred hhh--cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH---
Confidence 322 35788888 779999999999999877765522 22 57888999999999998874322211
Q ss_pred hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 222 RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
..+.+.+....|||.---+.+.
T Consensus 167 -----------q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 167 -----------QIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred -----------HHHHHHHHHHhhccCCceeeec
Confidence 3456677778899975444443
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=1.1e-13 Score=120.19 Aligned_cols=137 Identities=17% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------CCCCeEEEEcCCCCCCCCC-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFPT- 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------~~~~~~~~~~d~~~~~~~~- 173 (337)
++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5689999999999999999998 899999999999999874321 1246889999998875332
Q ss_pred CCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..||.|+-..+++|++.. .+.++.+.++|+|||.+++........... . .....+.+++.+++.. +|++...
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---g--Pp~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---G--PPFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---C--CCCCCCHHHHHHHhcC-CceEEEe
Confidence 579999999999999643 479999999999999765543322211110 0 1124688999999963 3776666
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
...
T Consensus 189 ~~~ 191 (218)
T PRK13255 189 ERQ 191 (218)
T ss_pred eec
Confidence 554
No 85
>PLN03075 nicotianamine synthase; Provisional
Probab=99.54 E-value=6.9e-14 Score=125.30 Aligned_cols=102 Identities=15% Similarity=0.054 Sum_probs=85.0
Q ss_pred CCCEEEEEcCcccHH-HHH-HHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFT-TLG-IVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~-~~~-l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
++++|+|||||.|.+ ++. ++..+|+.+++|+|+++++++.|++.... ++++|..+|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998743 333 34567889999999999999999988732 56999999997754334679999999
Q ss_pred cccccc--CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYW--PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+++++ .++.++++++.+.|+|||.+++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 688899999999999999999875
No 86
>PTZ00146 fibrillarin; Provisional
Probab=99.54 E-value=2.7e-13 Score=121.06 Aligned_cols=151 Identities=16% Similarity=0.088 Sum_probs=103.2
Q ss_pred cchHHHHHHhccc---cCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCC
Q 019684 92 HWTEDMRDDALEP---ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~---~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~ 166 (337)
++...+...++.- +.+ .++.+|||+|||+|.++..+++... ..+|+++|+|+.+.+...+.+ ...|+.++..|+
T Consensus 112 p~rSKlaa~i~~g~~~l~I-kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da 190 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPI-KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDA 190 (293)
T ss_pred CcccHHHHHHHCCcceecc-CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCc
Confidence 3445565555433 334 4889999999999999999999863 468999999987554333332 226889999998
Q ss_pred CCC---CCCCCCccEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHH----H
Q 019684 167 EDL---PFPTDYADRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEY----I 238 (337)
Q Consensus 167 ~~~---~~~~~~fD~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 238 (337)
... ....++||+|++... .+|. ..++.++.++|||||.+++.-.... . ..-.++++. .
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~-i----------d~g~~pe~~f~~ev 256 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANC-I----------DSTAKPEVVFASEV 256 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccc-c----------ccCCCHHHHHHHHH
Confidence 542 223357999998764 2443 4566799999999999998422111 0 011122222 3
Q ss_pred HHHHhCCCcEEEEEEcCcc
Q 019684 239 EWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~~~ 257 (337)
++|+++||+.++...+.+.
T Consensus 257 ~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 257 QKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred HHHHHcCCceEEEEecCCc
Confidence 8899999999999888643
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=8.4e-14 Score=128.99 Aligned_cols=145 Identities=19% Similarity=0.130 Sum_probs=110.4
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEE
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVE 163 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~ 163 (337)
.+.+....+.+...+++.... +++.+|||+|||+|.++..++.. +.+++|+|+++.|++.+++++.. .++.+..
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~ 236 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR 236 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe
Confidence 444556666677766666555 37889999999999999887665 78999999999999999887532 3478899
Q ss_pred cCCCCCCCCCCCccEEEecccccc--------cCC-HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCH
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEY--------WPD-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~--------~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
+|+.++++.+++||+|++.--... ..+ ...+++++.++|||||++++..+..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------- 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------- 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------
Confidence 999988887789999999632211 111 3689999999999999998875532
Q ss_pred HHHHHHHHhCCCcEEEEEEc
Q 019684 235 EEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 235 ~~~~~~l~~aGF~~v~~~~~ 254 (337)
.++.++++++|| ++.....
T Consensus 298 ~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CCHHHHHhhcCc-chheeee
Confidence 245578999999 7766553
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=99.53 E-value=3.1e-13 Score=115.01 Aligned_cols=125 Identities=25% Similarity=0.350 Sum_probs=96.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CC--eEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KE--CKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~--~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
++.+|||+|||+|.++..++.. +.+++++|+|+.+++.++++... .+ +.++.+|+.+ ++.+++||+|+++..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 6789999999999999999988 78999999999999999876421 12 7888888865 344557999998755
Q ss_pred ccccC---------------------CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh
Q 019684 185 IEYWP---------------------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 185 l~~~~---------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
+.+.. ....+++++.++|||||.+++..+.. ...+++.+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------~~~~~l~~~~~~ 163 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------TGEDEVLEYLEK 163 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------CCHHHHHHHHHH
Confidence 43311 12468999999999999998765321 235678899999
Q ss_pred CCCcEEEEEE
Q 019684 244 AGFKDVQLKR 253 (337)
Q Consensus 244 aGF~~v~~~~ 253 (337)
+||+++....
T Consensus 164 ~g~~~~~~~~ 173 (188)
T PRK14968 164 LGFEAEVVAE 173 (188)
T ss_pred CCCeeeeeee
Confidence 9998876654
No 89
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.51 E-value=2.9e-13 Score=117.12 Aligned_cols=97 Identities=22% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
+++.+|||+|||+|.++..+++.. +..+|+|+|+++ + ...+++.++++|+.+.+ +.+++||+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 578899999999999999998885 347999999988 1 11256899999998743 567789999
Q ss_pred EecccccccCCH-----------HHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++..+.++..++ ..+++++.++|||||.+++...
T Consensus 122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 998766654432 3589999999999999998654
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=99.51 E-value=9e-13 Score=115.47 Aligned_cols=147 Identities=21% Similarity=0.205 Sum_probs=100.2
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEc
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEG 164 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~ 164 (337)
.+.+...+..+... +..... .++.+|||+|||+|.++..++.. +..+++++|+|+.+++.++++... .+++++.+
T Consensus 15 ~~~p~~ds~~l~~~-l~~~~~-~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~ 91 (223)
T PRK14967 15 VYRPQEDTQLLADA-LAAEGL-GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG 91 (223)
T ss_pred CcCCCCcHHHHHHH-HHhccc-CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC
Confidence 33444444433333 333333 36789999999999999998876 345999999999999999887543 24778888
Q ss_pred CCCCCCCCCCCccEEEecccccccCC---------------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh
Q 019684 165 DAEDLPFPTDYADRYVSAGSIEYWPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (337)
Q Consensus 165 d~~~~~~~~~~fD~i~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 223 (337)
|+.+ .+.+++||+|+++--...... .+.+++++.++|||||++++......
T Consensus 92 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------- 163 (223)
T PRK14967 92 DWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------- 163 (223)
T ss_pred chhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------
Confidence 8865 345678999999743221111 24678899999999999998644321
Q ss_pred hhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+..++.+.+++.||.......
T Consensus 164 ---------~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 164 ---------GVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred ---------CHHHHHHHHHHCCCCeEEEEe
Confidence 234566677777776444433
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.50 E-value=3e-13 Score=120.45 Aligned_cols=123 Identities=25% Similarity=0.301 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....++. +...++..+.+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH--
Confidence 37899999999999999887765 3446999999999999999886544431 0001111122699999865332
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....++.++.++|||||++++++.... ..+.+.+.+++.||++++....+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 235788999999999999999865421 35678899999999998877654
No 92
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.5e-13 Score=120.37 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEE----EEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.+++..++. +..+++|+|++|.+++.+++|...+++.. ...+.... ...++||+|+++=.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~DvIVANIL 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPFDVIVANIL 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcccEEEehhh
Confidence 37899999999999999998887 45679999999999999999977666552 22222222 22358999998752
Q ss_pred ccccCCH-HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 185 IEYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 185 l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. ++ ..+...+.+.|||||+++++..... ..+.+.+.++++||+++++...+
T Consensus 239 A----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------q~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 239 A----EVLVELAPDIKRLLKPGGRLILSGILED----------------QAESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred H----HHHHHHHHHHHHHcCCCceEEEEeehHh----------------HHHHHHHHHHhCCCeEeEEEecC
Confidence 2 33 4788999999999999999875422 24678889999999999887764
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=2.9e-13 Score=117.55 Aligned_cols=110 Identities=23% Similarity=0.255 Sum_probs=87.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...++..+.+ .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.++++.. ..+++++.+|+...+
T Consensus 62 p~~~~~~~~~l~~-~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDL-KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 3444555555555 3789999999999999999888753 4799999999999999998753 246999999997655
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++||+|++.....+++ +.+.+.|||||++++.
T Consensus 141 ~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 5667899999987765443 4677899999999885
No 94
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=1.6e-13 Score=115.05 Aligned_cols=103 Identities=27% Similarity=0.356 Sum_probs=83.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|..+..+++..|..+|+++|+++.+++.++++... .+++++..|..+ ...+++||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 57899999999999999999998888899999999999999987543 238899999855 23367899999987665
Q ss_pred ccCC-----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPD-----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.-.+ .+++++++.++|||||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 4443 35799999999999999977643
No 95
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.47 E-value=5.6e-13 Score=108.57 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=110.8
Q ss_pred hHHHHHHhccccC---CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---C-CeEEEEcCC
Q 019684 94 TEDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K-ECKIVEGDA 166 (337)
Q Consensus 94 ~~~~~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~-~~~~~~~d~ 166 (337)
.+.+..++.+... +.....+|||+|||.|.++..|++.-=...++|+|.|+.+++.|+..+.. . .++|.+.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 3445555554443 33344599999999999999999872124599999999999998866543 2 399999999
Q ss_pred CCCCCCCCCccEEEeccccccc---CCH-----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 167 EDLPFPTDYADRYVSAGSIEYW---PDP-----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~---~~~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
.+..+..++||+|+-...+..+ ++. ...+..+.+.|+|||+++|..++. |.+++.
T Consensus 128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-----------------T~dELv 190 (227)
T KOG1271|consen 128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-----------------TKDELV 190 (227)
T ss_pred cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-----------------cHHHHH
Confidence 8867777889999987776654 221 246888999999999999987653 778999
Q ss_pred HHHHhCCCcEEEEEEcC
Q 019684 239 EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~ 255 (337)
+.++..||+.....+..
T Consensus 191 ~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 191 EEFENFNFEYLSTVPTP 207 (227)
T ss_pred HHHhcCCeEEEEeeccc
Confidence 99999999987776654
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=5.6e-13 Score=116.09 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=84.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~ 172 (337)
+...+++.+.. .++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++... .+++++.+|+.+....
T Consensus 65 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLEL-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCC-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 34444555554 3789999999999999999998853 46799999999999999987532 4689999999765444
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+||+|++.....+++ +.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 56899999887665543 5678899999999875
No 97
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=3.8e-13 Score=125.35 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
.+.+|||+|||+|.++..+++..|..+|+++|.|+.+++.++++... .+++++..|..+. +.+++||+|+++-
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 34699999999999999999999999999999999999999987421 2578888887542 3345799999986
Q ss_pred ccccc---CC--HHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYW---PD--PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~---~~--~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|.. .+ ..++++++.++|+|||.++++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 66533 22 24789999999999999999853
No 98
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=1.4e-12 Score=119.33 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CCCCCC----CccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LPFPTD----YADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~~~~~----~fD~ 178 (337)
+++.+|||+|||+|..+..+++..+ +.+|+++|+|++|++.+++++.. .++.++++|+.+ ++.... ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3668999999999999999998865 58999999999999999887432 346778999965 333332 2345
Q ss_pred EEecccccccCC--HHHHHHHHHHhccCCCEEEEE
Q 019684 179 YVSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 179 i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+++..++++++. ...++++++++|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555677777754 347999999999999999874
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.46 E-value=9.1e-13 Score=119.75 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=92.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC----CeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++.... ++.+...+.. +..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 6799999999999999888765 4569999999999999999875432 3445555532 2335689999997654
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+ ....++.++.++|||||+++++..... ..+++.+.+++. |+.++....+
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------~~~~v~~~~~~~-f~~~~~~~~~ 285 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGILET----------------QAQSVCDAYEQG-FTVVEIRQRE 285 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------HHHHHHHHHHcc-CceeeEeccC
Confidence 3 235789999999999999999875321 245677788776 9887766543
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.45 E-value=2.6e-12 Score=110.31 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=86.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC-CC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~-~~ 170 (337)
.+....++..+.. .++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++.. ..+++++.+|+.+ ++
T Consensus 26 ~~v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 3444445555554 37789999999999999999887778899999999999999998743 2468899999854 22
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.....+|.++... ..+...+++++.++|+|||++++....
T Consensus 105 ~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2223467766532 235678999999999999999988653
No 101
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.45 E-value=4.2e-13 Score=118.98 Aligned_cols=133 Identities=31% Similarity=0.443 Sum_probs=99.6
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
....++ .+..+|||||+|+|.++..+++.+|+.+++..|+ |.+++.+++ .++++++.+|+. -+++. +|+|++
T Consensus 93 ~~~~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P~--~D~~~l 164 (241)
T PF00891_consen 93 LEAFDF-SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLPV--ADVYLL 164 (241)
T ss_dssp HHHSTT-TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCSS--ESEEEE
T ss_pred hccccc-cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHH-hhhcc--ccceee
Confidence 333444 3567999999999999999999999999999999 999999888 578999999997 35555 999999
Q ss_pred cccccccCCHH--HHHHHHHHhccCC--CEEEEEcCCCCc----hhHh--hhhhhhhc------cCCCHHHHHHHHH
Q 019684 182 AGSIEYWPDPQ--RGIREAYRVLKLG--GKACIIGPVYPT----FWLS--RYFADVWM------LFPKEEEYIEWFQ 242 (337)
Q Consensus 182 ~~~l~~~~~~~--~~l~~~~~~Lkpg--G~l~i~~~~~~~----~~~~--~~~~~~~~------~~~~~~~~~~~l~ 242 (337)
.+++|+++|.+ .+|+++++.|+|| |+|+|.+...+. .... ....+..+ .-+|.++|.++|+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999998875 7999999999999 999998765332 1111 01122211 2367888888874
No 102
>PLN02672 methionine S-methyltransferase
Probab=99.44 E-value=8.2e-13 Score=136.24 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=125.2
Q ss_pred hhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCC-CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHH
Q 019684 70 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (337)
Q Consensus 70 ~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~ 148 (337)
..+..+||+....+...+++|+++++.+.+. +...+.. -++.+|||+|||+|..++.++...+..+|+|+|+|+.+++
T Consensus 78 ~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 78 YEGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred CCCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 3466789999999999999999999999888 4432210 1356899999999999999999988889999999999999
Q ss_pred HHHhhCCC-------------------CCeEEEEcCCCCCCCC-CCCccEEEecc--------------ccccc------
Q 019684 149 KAKQKEPL-------------------KECKIVEGDAEDLPFP-TDYADRYVSAG--------------SIEYW------ 188 (337)
Q Consensus 149 ~a~~~~~~-------------------~~~~~~~~d~~~~~~~-~~~fD~i~~~~--------------~l~~~------ 188 (337)
.|++|+.. .+++|+++|+.+.... ..+||+|+++- +..|-
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 99887532 3589999998653211 23699999931 11111
Q ss_pred --------------CC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH-HHHHhCCCcEE
Q 019684 189 --------------PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI-EWFQKAGFKDV 249 (337)
Q Consensus 189 --------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGF~~v 249 (337)
.| ..+++.++.++|+|||.+++.-... ..+.+. +++++.||+.+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----------------q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----------------PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHHHCCCCee
Confidence 11 1478889999999999998753211 235566 58999999987
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
.+....
T Consensus 300 ~~~~~~ 305 (1082)
T PLN02672 300 KLWQTK 305 (1082)
T ss_pred EEeeeh
Confidence 775553
No 103
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=2.4e-12 Score=113.80 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
...+|||+|||+|.++..++...++.+|+++|+|+.+++.++++. ++++++++|+.+... +.+||+|+++-.+.+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcc-cCCCcEEEEcCCccccC
Confidence 457999999999999998888766689999999999999999875 468899999987543 45799999987777653
Q ss_pred CH--------------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 190 DP--------------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 190 ~~--------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
.. .+.+.....+|+|+|.+.+.-... ..++.-.+.+++.++|+++||..
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~----------~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR----------PYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc----------ccccccCCHHHHHHHHHhcCcEe
Confidence 21 245677788889999777662211 12233458899999999999984
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=7.8e-13 Score=122.45 Aligned_cols=103 Identities=21% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
...+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++....+ .+++..|+.+. .+++||+|+++..+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3468999999999999999999888899999999999999998754433 45677777542 2567999999988876
Q ss_pred cC-----CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 188 WP-----DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 188 ~~-----~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.. ..+++++++.++|||||.++++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 32 2368999999999999999987654
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.42 E-value=1e-12 Score=121.94 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=86.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
.+..+||||||+|.++..++...|...++|+|+++.+++.+.+++. ..|+.++.+|+..+ .++++++|.|++.+.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5679999999999999999999999999999999999999887643 25799999999653 467889999998654
Q ss_pred ccccCCH------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 185 IEYWPDP------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~~~~------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+.... ..+++++.++|+|||.+.+.+..
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 4332222 47999999999999999997654
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=7.7e-13 Score=119.31 Aligned_cols=139 Identities=26% Similarity=0.303 Sum_probs=96.2
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe--EEEEcCCCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDL 169 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~d~~~~ 169 (337)
|.+..+--..+.... .++.+|||+|||||.+++..++. +..+|+|+|++|.+++.|++|+..+++ .+......+
T Consensus 145 H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~- 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED- 220 (295)
T ss_dssp CHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC-
T ss_pred CHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc-
Confidence 334444444444443 36889999999999999987776 456899999999999999988543321 222222222
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
...++||+|+++-...- ...++..+.++|+|||+++++..... ..+.+.+.+++ ||+.+
T Consensus 221 -~~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 221 -LVEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE----------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp -TCCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHT-TEEEE
T ss_pred -cccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------HHHHHHHHHHC-CCEEE
Confidence 22478999998754432 24688889999999999999876433 24677788877 99998
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
+....+
T Consensus 280 ~~~~~~ 285 (295)
T PF06325_consen 280 EEREEG 285 (295)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887754
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.37 E-value=8.6e-13 Score=103.40 Aligned_cols=102 Identities=30% Similarity=0.391 Sum_probs=82.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.+... .+++++++|+.+.. +.+++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999995 58999999999999999987542 46899999997654 67789999999765
Q ss_pred ccccC--------CHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWP--------DPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 55321 124789999999999999988643
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.7e-12 Score=108.47 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=106.7
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f 176 (337)
.....+. ++++|||.|+|+|.++..|+... |..+|+.+|+.++..+.|++|+.. +++++..+|+.+.-+++ .|
T Consensus 87 ~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 87 VARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred HHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-cc
Confidence 3444553 89999999999999999999754 558999999999999999998543 44888999997755555 79
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|+|++ .+++|..+++.+.++|||||.+++..++.+. .+...+.|++.||..++..++-
T Consensus 165 Dav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ----------------v~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 165 DAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ----------------VEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred CEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH----------------HHHHHHHHHhcCccchhhheee
Confidence 99995 5899999999999999999999998876443 2445567888899988776653
No 109
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.37 E-value=2.4e-12 Score=109.32 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CC-eEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~-~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
...+.||.|+|-|..+..+...+ --+|-.+|+.+..++.|++.... .+ .++.+..++++..+.++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999998876654 56899999999999999987654 23 5778888877655567899999999999
Q ss_pred ccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|++|.+ ++|+++...|+|||.+++-+....... ..++. -.....+.+.+.+++++||++++....-.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 999875 799999999999999999765433210 00010 01113467899999999999998876643
No 110
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=1.7e-11 Score=106.24 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=99.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------CCCCeEEEEcCCCCCCCC--
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-- 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------~~~~~~~~~~d~~~~~~~-- 172 (337)
++.+||+.|||.|..+..|++. |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 5789999999999999999998 899999999999999976521 124689999999887632
Q ss_pred -CCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccC-CCHHHHHHHHHhCCCcE
Q 019684 173 -TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF-PKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 173 -~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGF~~ 248 (337)
.+.||+|+-..++++++.. .+..+.+.++|+|||.+++......... ..-.| .+.+++.+++.. +|++
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~-------~GPPf~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS-------QTPPYSVTQAELIKNFSA-KIKF 192 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC-------CCCCCcCCHHHHHHhccC-CceE
Confidence 2579999999999999754 4799999999999999888754322110 00012 367888888864 3444
Q ss_pred EEE
Q 019684 249 VQL 251 (337)
Q Consensus 249 v~~ 251 (337)
..+
T Consensus 193 ~~l 195 (226)
T PRK13256 193 ELI 195 (226)
T ss_pred EEe
Confidence 333
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=9.9e-12 Score=108.31 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=106.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~ 183 (337)
...+|||+|||+|..++.++++.+.++++|||+++++.+.|+++... .+++++++|+.++. ....+||+|+|+-
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 47899999999999999999998779999999999999999988543 56999999997654 3345799999953
Q ss_pred ccccc------------------CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 184 SIEYW------------------PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 184 ~l~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
-..-. .+.+.+++.+.+.|||||.+.++-+.. ...++.++|++.+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------rl~ei~~~l~~~~ 186 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------RLAEIIELLKSYN 186 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------HHHHHHHHHHhcC
Confidence 32211 123478999999999999999985421 2456788999999
Q ss_pred CcEEEEEEcCcccc
Q 019684 246 FKDVQLKRIGPKWY 259 (337)
Q Consensus 246 F~~v~~~~~~~~~~ 259 (337)
|....+..+-++-.
T Consensus 187 ~~~k~i~~V~p~~~ 200 (248)
T COG4123 187 LEPKRIQFVYPKIG 200 (248)
T ss_pred CCceEEEEecCCCC
Confidence 99988888765543
No 112
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=8.4e-12 Score=108.46 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
..+...++..+.. .++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.. ..+++++.+|..+...
T Consensus 64 p~~~~~l~~~l~~-~~~~~VLeiG~GsG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 64 PYMVARMTELLEL-KPGDRVLEIGTGSGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 3344444544544 37899999999999999988877 3589999999999999988743 2468999999855333
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..++||+|++....+++ .+++.+.|+|||++++...
T Consensus 141 ~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 34689999998766554 3567899999999988643
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=2.1e-11 Score=104.01 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
+++.+|||+|||+|.++..+++.. +..+++++|+|+.+ ...++.++++|+.+.. +.+++||+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 478999999999999999988875 45689999999865 1256888989986642 345679999
Q ss_pred Eeccccc--------ccC---CHHHHHHHHHHhccCCCEEEEEc
Q 019684 180 VSAGSIE--------YWP---DPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~~~l~--------~~~---~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++....+ |.. +...+++++.++|+|||++++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 111 12578999999999999999864
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.35 E-value=1.1e-11 Score=93.71 Aligned_cols=98 Identities=32% Similarity=0.403 Sum_probs=82.9
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCCC-CCCCccEEEecccccc-
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPF-PTDYADRYVSAGSIEY- 187 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~~- 187 (337)
+|+|+|||+|..+..++. .+..+++++|+++.+++.+++. ....++.++..|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999888 4578999999999999988832 233568899999976543 4567999999999998
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999876
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-11 Score=104.64 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=88.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~ 173 (337)
+...++..+.. +++.+|||||||+|..+..|++. ..+|+.+|..++..+.|++++ ...|+.++++|...-..+.
T Consensus 60 ~vA~m~~~L~~-~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLEL-KPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCC-CCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 44444555555 48899999999999999999998 459999999999999999874 3457999999997655556
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..||.|+.......+|+ .+.+.|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 78999999998888875 47889999999988543
No 116
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.32 E-value=5.5e-12 Score=109.21 Aligned_cols=148 Identities=20% Similarity=0.159 Sum_probs=110.8
Q ss_pred HHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccC---CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEe
Q 019684 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141 (337)
Q Consensus 65 ~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD 141 (337)
.+.||+-+...|-+..-..-..+++|+..++++++.+++... .. ++..|||+|||+|.++..++...|.++++++|
T Consensus 101 ~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD 179 (328)
T KOG2904|consen 101 MPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAID 179 (328)
T ss_pred CChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEe
Confidence 346777777777776666777899999999999888876643 22 45689999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCC----CCeEEEEcCCC-----CCCCCCCCccEEEecccccccCC----------------------
Q 019684 142 QSPHQLAKAKQKEPL----KECKIVEGDAE-----DLPFPTDYADRYVSAGSIEYWPD---------------------- 190 (337)
Q Consensus 142 ~s~~~~~~a~~~~~~----~~~~~~~~d~~-----~~~~~~~~fD~i~~~~~l~~~~~---------------------- 190 (337)
.|+.++..|.+|+.. .++..+..+++ ..+..+++.|+++++--.-.-.|
T Consensus 180 ~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e 259 (328)
T KOG2904|consen 180 VSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE 259 (328)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc
Confidence 999999999988543 44666644442 23355688999999532221111
Q ss_pred ----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 191 ----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 191 ----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...++.-+.|+|+|||.+.+...
T Consensus 260 G~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 260 GYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11467778899999999988654
No 117
>PRK01581 speE spermidine synthase; Validated
Probab=99.30 E-value=7.5e-11 Score=108.19 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=99.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh----------CCCCCeEEEEcCCCC-CCCCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAED-LPFPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~~~~d~~~-~~~~~~~fD~ 178 (337)
...+||+||||+|..+..+.+..+..+|+++|+++++++.|++. ...++++++.+|+.+ +...+++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 56899999999999999888875567999999999999999962 134689999999865 3444567999
Q ss_pred EEecccccc---cCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 179 YVSAGSIEY---WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 179 i~~~~~l~~---~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|++...-.. ... -..+++.+.+.|+|||.+++...... . .... ...+.+.|+++||.+.....
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-~-~~~~----------~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-D-APLV----------YWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-h-hHHH----------HHHHHHHHHHhCCceEEEEE
Confidence 998632110 000 14689999999999999987643211 0 0000 12367899999999888777
Q ss_pred cCccc
Q 019684 254 IGPKW 258 (337)
Q Consensus 254 ~~~~~ 258 (337)
..+.+
T Consensus 298 ~vPsy 302 (374)
T PRK01581 298 IVPSF 302 (374)
T ss_pred ecCCC
Confidence 76554
No 118
>PRK04457 spermidine synthase; Provisional
Probab=99.30 E-value=2.3e-11 Score=108.89 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~i~~~~ 183 (337)
+++.+|||||||+|.++..+++..|+.+++++|+++.+++.|+++.. .++++++.+|+.+ +....++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35689999999999999999999899999999999999999998753 2568999999854 222235799999753
Q ss_pred ccc-ccCC---HHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIE-YWPD---PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~-~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.-. ..+. ...+++++.+.|+|||++++.-.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 111 1111 25899999999999999998543
No 119
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.28 E-value=3.7e-11 Score=105.58 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=102.1
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC---
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP--- 172 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~--- 172 (337)
++..+.+. +|.+|||.|+|+|.++..+++.. |..+|+.+|..++..+.|+++.. ..++++.+.|+.+..+.
T Consensus 32 I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 34455553 89999999999999999999764 67899999999999999998743 35799999999543332
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhc-cCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+..+|.|++ .+++|...+..+.++| +|||++++..++.+. .....+.|++.||.++++
T Consensus 111 ~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------v~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 111 ESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ----------------VQKTVEALREHGFTDIET 169 (247)
T ss_dssp TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH----------------HHHHHHHHHHTTEEEEEE
T ss_pred cCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH----------------HHHHHHHHHHCCCeeeEE
Confidence 356999985 5899999999999999 999999998776443 245567889999999888
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
.++-
T Consensus 170 ~Evl 173 (247)
T PF08704_consen 170 VEVL 173 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 120
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.28 E-value=1.1e-10 Score=101.25 Aligned_cols=138 Identities=24% Similarity=0.268 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-CC--------------CCCeEEEEcCCCCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EP--------------LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-~~--------------~~~~~~~~~d~~~~~~~~ 173 (337)
.++.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+. .. ..++++.++|+.+++...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 36789999999999999999998 89999999999999998432 11 135789999998876433
Q ss_pred -CCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 174 -DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 174 -~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++||+|+=..+++.++. ..+..+.+.++|+|||.+++.....+..... ... ...+.+++.+++. .+|++..
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~---GPP--f~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME---GPP--FSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS---SSS------HHHHHHHHT-TTEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC---CcC--CCCCHHHHHHHhc-CCcEEEE
Confidence 57999999999988853 3579999999999999955443222111000 000 1236788999998 8999887
Q ss_pred EEEc
Q 019684 251 LKRI 254 (337)
Q Consensus 251 ~~~~ 254 (337)
....
T Consensus 188 l~~~ 191 (218)
T PF05724_consen 188 LEEE 191 (218)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7764
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=9.2e-11 Score=112.43 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCCCC--CCCCCccEEEecc-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLP--FPTDYADRYVSAG- 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~--~~~~~fD~i~~~~- 183 (337)
.++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++.... +++++++|+.+++ +.+++||.|++.-
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 4789999999999999999999876679999999999999999886432 3678999997653 3456799999532
Q ss_pred -----cccccC------C----------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 184 -----SIEYWP------D----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 184 -----~l~~~~------~----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
++.+-+ . ..++++++.++|||||++++++...... .+.+.+...++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------------Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------------ENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hCHHHHHHHHH
Confidence 111111 1 1268999999999999999887643321 13455556666
Q ss_pred hC-CCcEEE
Q 019684 243 KA-GFKDVQ 250 (337)
Q Consensus 243 ~a-GF~~v~ 250 (337)
+. +|+.+.
T Consensus 390 ~~~~~~~~~ 398 (427)
T PRK10901 390 RHPDAELLD 398 (427)
T ss_pred hCCCCEEec
Confidence 54 566544
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=2.3e-11 Score=111.45 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=84.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...+++.+.+. ++.+|||||||+|.++..+++..+. .+|+++|+++++++.|+++.. ..++.++.+|+.+.+
T Consensus 66 p~l~a~ll~~L~i~-~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcCCC-CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 33444455555543 6789999999999999999987643 579999999999999987643 246889999986655
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++||+|++...+.+++ ..+.+.|+|||++++.
T Consensus 145 ~~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEE
Confidence 4456799999886655443 3567899999998875
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.7e-11 Score=106.92 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=87.2
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe---EEEEcCCCCCCCCCCCccE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---KIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~d~~~~~~~~~~fD~ 178 (337)
++.++.. .+.+|||+|||.|.+++.+++..|..+++-+|.|..+++.+++++..+++ .+...|..+ +..+ +||+
T Consensus 151 l~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~ 227 (300)
T COG2813 151 LETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDL 227 (300)
T ss_pred HHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccE
Confidence 4444443 34599999999999999999999999999999999999999998764432 456666654 3334 7999
Q ss_pred EEecccccccCCH-----HHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+|+--+|--.+. ++++++..+.|++||.|.++...
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 9999888754332 37999999999999999988653
No 124
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.26 E-value=9.8e-11 Score=101.79 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=98.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
...++||||.|.|..+..++..+ .+|+++|.|+.|....+++ +.+.+ |..++.-.+.+||+|.|.++|....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k----g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK----GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC----CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 45789999999999999999884 5799999999998887764 33333 4434443456899999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEc---------CCC-CchhHhhhhhhhhccC-CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIG---------PVY-PTFWLSRYFADVWMLF-PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~---------~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|..+|+++++.|+|+|++++.- ... ........+.-....+ ...+.+.+.|+.+||+++......
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999999998751 111 0000000000000000 013445588999999999988875
No 125
>PRK00811 spermidine synthase; Provisional
Probab=99.26 E-value=4.4e-11 Score=108.30 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=81.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--------CCCCeEEEEcCCCC-CCCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECKIVEGDAED-LPFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~~~d~~~-~~~~~~~fD~i~ 180 (337)
++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++.. ..++++++.+|+.. +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 568999999999999999988645579999999999999999864 24678999999854 233456899999
Q ss_pred ecccccccCCH----HHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDP----QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+...-.+.+.. ..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86543332221 578899999999999998753
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=9e-11 Score=112.71 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC----CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP----FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~----~~~~~fD~i~ 180 (337)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++... .+++++.+|+.+++ ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4789999999999999999998753 46999999999999999887543 45889999997765 3456899999
Q ss_pred ec------ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 181 SA------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 181 ~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
+. .++.+.++ ..+++.++.+.|||||+++.++...... .+.+.+.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------------Ene~~v~ 397 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------------ENEAQIE 397 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hHHHHHH
Confidence 73 34444443 2478999999999999999887654321 1344566
Q ss_pred HHHHhC-CCcEE
Q 019684 239 EWFQKA-GFKDV 249 (337)
Q Consensus 239 ~~l~~a-GF~~v 249 (337)
..|++. +|+.+
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 677665 57643
No 127
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.25 E-value=2.3e-10 Score=97.79 Aligned_cols=99 Identities=30% Similarity=0.408 Sum_probs=75.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--C--CeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K--ECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~--~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
...++|+|||+|.-++.++.. -.+|+|+|+|+.|++.|++.... . ..++...+..++--.+++.|+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 348999999999888888887 46899999999999999876432 1 12333334444433478999999999997
Q ss_pred ccCCHHHHHHHHHHhccCCC-EEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGG-KACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG-~l~i~~ 212 (337)
++ |.+++++++.|+||+.| .+.+-.
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 66 67899999999999877 555543
No 128
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.25 E-value=6.9e-11 Score=99.97 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=105.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCe-EEEEcCCCCC--CC------CCCCccEE
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKEC-KIVEGDAEDL--PF------PTDYADRY 179 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~-~~~~~d~~~~--~~------~~~~fD~i 179 (337)
.+|||||||||..+..++..+|..+..-.|+++..+...++.. ...|+ .-+..|+.+. +. ..++||+|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 3699999999999999999999999999999988865544321 22332 3355666443 22 24589999
Q ss_pred EecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchh--------Hhhhhh--hhhccCCCHHHHHHHHHhCCCc
Q 019684 180 VSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFW--------LSRYFA--DVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 180 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
++.+++|-.+-. +.+++.+.++|+|||.|++..+...... +...+. +....+.+.+++.++.+++|++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 999999765533 5799999999999999999887544221 111111 1122467899999999999999
Q ss_pred EEEEEEcC
Q 019684 248 DVQLKRIG 255 (337)
Q Consensus 248 ~v~~~~~~ 255 (337)
.++...+.
T Consensus 187 l~~~~~MP 194 (204)
T PF06080_consen 187 LEEDIDMP 194 (204)
T ss_pred cCcccccC
Confidence 88877765
No 129
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.25 E-value=7.6e-11 Score=99.18 Aligned_cols=117 Identities=23% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++...|-|.|||.+.++..+.. ..+|...|+-. .+-.+..+|+..+|++++++|+++..-.|. -
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------------~n~~Vtacdia~vPL~~~svDv~VfcLSLM-G 134 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------------PNPRVTACDIANVPLEDESVDVAVFCLSLM-G 134 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-------------SSTTEEES-TTS-S--TT-EEEEEEES----S
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccC------------CCCCEEEecCccCcCCCCceeEEEEEhhhh-C
Confidence 4567999999999999866542 46899999832 223477899999999999999999887775 4
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.|+..+++|+.|+|||||.|.|.+... ++.+.+.+.+.+++.||+.......+
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV~S--------------Rf~~~~~F~~~~~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEVKS--------------RFENVKQFIKALKKLGFKLKSKDESN 187 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------G-S-HHHHHHHHHCTTEEEEEEE--S
T ss_pred CCcHHHHHHHHheeccCcEEEEEEecc--------------cCcCHHHHHHHHHHCCCeEEecccCC
Confidence 688999999999999999999987542 24477889999999999988866554
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.23 E-value=1.5e-10 Score=110.91 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC----eEEEEcCCCCCCC--CCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDLPF--PTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~d~~~~~~--~~~~fD~i~~~ 182 (337)
.++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++....+ +.+..+|....+. .+++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 47899999999999999999998777899999999999999998864333 2335566654443 45679999962
Q ss_pred ------ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 ------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 ------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++.+.++ ..++++++.++|||||+++++++...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 34555444 24799999999999999999877653
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.22 E-value=4.3e-11 Score=103.10 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=82.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...+++.+.+ +++.+|||||||+|..+..++.... ..+|+++|..+...+.|++++. ..|+.++.+|.....
T Consensus 58 P~~~a~~l~~L~l-~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDL-KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhc-CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 4455556666665 4899999999999999999998753 3579999999999999998754 357999999986544
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.....||.|++......++ ..+.+.|++||++++.
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 4456899999998886554 3477889999999884
No 132
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=6.4e-10 Score=94.90 Aligned_cols=144 Identities=18% Similarity=0.307 Sum_probs=96.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 157 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 157 (337)
.+..+|||||.+|.++..+++.+....+.|+|+++..++.|+++....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 568899999999999999999998888999999999999999865321
Q ss_pred ------CeEEEEcCC-----CCCCCCCCCccEEEeccccccc----CC--HHHHHHHHHHhccCCCEEEEEcCCCCchhH
Q 019684 158 ------ECKIVEGDA-----EDLPFPTDYADRYVSAGSIEYW----PD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL 220 (337)
Q Consensus 158 ------~~~~~~~d~-----~~~~~~~~~fD~i~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 220 (337)
++.|...+. .-+.+....||+|+|..+-.++ .| ..++++++.++|.|||+|++.-.....+..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 111111111 0012345679999996554433 22 358999999999999999886433222211
Q ss_pred h-----hhhhhhhccCCCHHHHHHHHHhC--CCcEEEEEE
Q 019684 221 S-----RYFADVWMLFPKEEEYIEWFQKA--GFKDVQLKR 253 (337)
Q Consensus 221 ~-----~~~~~~~~~~~~~~~~~~~l~~a--GF~~v~~~~ 253 (337)
. ....+....+..++.+..++.+. ||+.++-..
T Consensus 218 aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 218 AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 1 11122223456789999999887 666544433
No 133
>PRK03612 spermidine synthase; Provisional
Probab=99.20 E-value=1.9e-10 Score=112.64 Aligned_cols=126 Identities=20% Similarity=0.150 Sum_probs=93.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhC----------CCCCeEEEEcCCCC-CCCCCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE----------PLKECKIVEGDAED-LPFPTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~~~d~~~-~~~~~~~fD 177 (337)
++++|||||||+|..+..+.+. +. .+++++|+++++++.++++. ..++++++.+|+.+ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5689999999999999998875 54 79999999999999999831 23678999999865 223346899
Q ss_pred EEEecccccccCCH-----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 178 RYVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 178 ~i~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+|++...-...+.. .++++.+.+.|||||.+++..... ... .. ...++.+.++++||.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-~~~-~~----------~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-YFA-PK----------AFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-ccc-hH----------HHHHHHHHHHHcCCEE
Confidence 99997543332221 368999999999999998864321 110 00 1246788999999943
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.5e-10 Score=109.23 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEec-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSA- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~- 182 (337)
.++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.+++++.. .+++++.+|+..++ +.+++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 478899999999999999999875 357999999999999999987543 35789999997765 445679999972
Q ss_pred -----ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 -----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 -----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++..-++ ..+++.++.+.|||||.++.+++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222121 13679999999999999999877643
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.19 E-value=2.8e-10 Score=95.31 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=79.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
++.+.. .++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... .+++++.+|+.++++++.+||.|+
T Consensus 6 ~~~~~~-~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 6 VRAANL-RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHhcCC-CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence 333443 26789999999999999999988 67999999999999999988643 579999999998887776799999
Q ss_pred ecccccccCCHHHHHHHHHHh--ccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRV--LKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~i~~ 212 (337)
++--++ +. ..++..+.+. +.++|.+++..
T Consensus 83 ~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 865443 32 2444444433 34777777753
No 136
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.19 E-value=4.1e-10 Score=102.10 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred cCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC---eEEEEc
Q 019684 88 INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CKIVEG 164 (337)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~ 164 (337)
+.|......+++.+.+.+... +|..|||-=||||.+++...-. |++++|+|++..|++.|+.|+..-+ ..+...
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~-~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVK-RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred cCcCCcCHHHHHHHHHHhccc-cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 345666777888888887775 8999999999999999997777 8999999999999999999876533 334444
Q ss_pred -CCCCCCCCCCCccEEEeccccc-----ccCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCH
Q 019684 165 -DAEDLPFPTDYADRYVSAGSIE-----YWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (337)
Q Consensus 165 -d~~~~~~~~~~fD~i~~~~~l~-----~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
|+..+|+.++++|.|++---.. .... ..++++.+.++||+||++++..+..
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~------------------- 313 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD------------------- 313 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------------
Confidence 9999999888999999832211 1111 3579999999999999999986621
Q ss_pred HHHHHHHHhCCCcEEEEEEc
Q 019684 235 EEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 235 ~~~~~~l~~aGF~~v~~~~~ 254 (337)
....+++.||.++.....
T Consensus 314 --~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 314 --PRHELEELGFKVLGRFTM 331 (347)
T ss_pred --chhhHhhcCceEEEEEEE
Confidence 224788899998877654
No 137
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=1.6e-10 Score=111.33 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEec--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~-- 182 (337)
.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++.. .+++++++|+.+++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 3678999999999999988887653 46999999999999999887543 35889999997764 45679999962
Q ss_pred ----ccccccC------C----------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 ----GSIEYWP------D----------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 ----~~l~~~~------~----------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++..-+ + ..+++.++.+.|||||++++.+....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111111 1 12589999999999999999877643
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=3.6e-10 Score=109.01 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC--CCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~fD~i~~~ 182 (337)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++... .+++++++|+.++. +. ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 367899999999999999999876 567999999999999999887533 35889999997653 33 679999974
Q ss_pred c------cccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHH
Q 019684 183 G------SIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (337)
Q Consensus 183 ~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
- ++.+.++ ...+++++.++|||||.++.++....... +...+...
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E-------------ne~vv~~~ 394 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE-------------NEEVIEAF 394 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh-------------hHHHHHHH
Confidence 2 1222121 12589999999999999998765432211 23345556
Q ss_pred HHhC-CCcEEEE
Q 019684 241 FQKA-GFKDVQL 251 (337)
Q Consensus 241 l~~a-GF~~v~~ 251 (337)
+++. +|+.+..
T Consensus 395 l~~~~~~~~~~~ 406 (444)
T PRK14902 395 LEEHPEFELVPL 406 (444)
T ss_pred HHhCCCcEEecc
Confidence 6665 4765543
No 139
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.16 E-value=1.2e-10 Score=98.83 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCC--CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL--PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~--~~~~~~fD~i~ 180 (337)
+.+.+|||.++|-|..++...++ ++ +|+.++.++..++.|.-|.- ..+++.+.+|+.+. .+.|++||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 36899999999999999999988 65 99999999999999986632 24578999999553 47899999998
Q ss_pred ec---ccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 181 SA---GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 181 ~~---~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.. +++.-.---.++.++++|+|||||.++-..-.... .++...-+..+.+.|+++||++++....
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------ccccCChhHHHHHHHHhcCceeeeeehh
Confidence 52 11111111257999999999999999875433221 1112234577889999999998776553
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.15 E-value=4.9e-10 Score=100.60 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEec--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~-- 182 (337)
+++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++.. .++.++..|+..++...+.||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4788999999999999999988764 36899999999999999887543 45788899987665445679999972
Q ss_pred ----ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 ----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 ----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++.+-++ ..++++++.+.|||||+|+.++....
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12222111 12589999999999999998876543
No 141
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.14 E-value=3.2e-10 Score=97.55 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=97.1
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
++.+...+....|.|+|||.+.++. .. ...|+.+|+-+ .|-+++.+|+.++|++|++.|+++.
T Consensus 172 i~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a------------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 172 IRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA------------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred HHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeec------------CCCceeeccccCCcCccCcccEEEe
Confidence 3333333567889999999998876 22 34788999821 3556889999999999999999998
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
.-.|. -.|...++.+++|+|+|||.++|.+... .|.+...+...|...||...+....+..
T Consensus 235 CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 235 CLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS--------------RFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred eHhhh-cccHHHHHHHHHHHhccCceEEEEehhh--------------hcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 77664 5788999999999999999999987543 2457778999999999998777665533
No 142
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.14 E-value=9.3e-10 Score=96.90 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=110.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC---CC-eEEEEcCCCCC---CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KE-CKIVEGDAEDL---PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~---~~-~~~~~~d~~~~---~~~~~~fD~i 179 (337)
...-+||||.||.|.........+|. .++...|.|+..++..++.... .+ ++|.++|+.+. .-.+...|++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999999999998876 7899999999999998876543 23 49999999653 2223458999
Q ss_pred EecccccccCCHH---HHHHHHHHhccCCCEEEEEc-CCCCchhH-hhhhh------hhhccCCCHHHHHHHHHhCCCcE
Q 019684 180 VSAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIG-PVYPTFWL-SRYFA------DVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 180 ~~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~i~~-~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+.+..++.++|-+ ..++.+.+.+.|||+++.+. +.++...+ .+.+. ...+...+..++.+++++|||+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9999999999853 67999999999999999886 34443321 22221 22234579999999999999996
Q ss_pred EEEE
Q 019684 249 VQLK 252 (337)
Q Consensus 249 v~~~ 252 (337)
++..
T Consensus 294 ~~q~ 297 (311)
T PF12147_consen 294 IDQR 297 (311)
T ss_pred hhhe
Confidence 5554
No 143
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.13 E-value=8.4e-10 Score=99.76 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=103.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
.-...+|+|.|.|..+..+...+|. +-+++++...+..+..... ++++.+.+|..+- .|. -|+|++.+++||++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3478999999999999999998875 5566666566555555554 6688999998543 333 47999999999999
Q ss_pred CHH--HHHHHHHHhccCCCEEEEEcCCCCch-hHhh------hhhhhhc-------cCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 190 DPQ--RGIREAYRVLKLGGKACIIGPVYPTF-WLSR------YFADVWM-------LFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 190 ~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~------~~~~~~~-------~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|.+ ++|++++..|+|||++++.+...+.. .... ...+..+ .-.+..++..++.++||.+..+..
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~ 330 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVAL 330 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEe
Confidence 875 89999999999999999998755431 1000 0011111 124789999999999999888776
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 331 ~~ 332 (342)
T KOG3178|consen 331 TA 332 (342)
T ss_pred cc
Confidence 54
No 144
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=2.2e-10 Score=96.85 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=107.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+....++|||||-|.....+..+. ..+++-+|.|-.|++.++..-. .-.+....+|-+.++|.++++|+|+++..+|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 356789999999999999998882 4689999999999999985432 12256778899999999999999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-h--hh---------hhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-Y--FA---------DVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~--~~---------~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..|....+.++...|||+|.++-.-.........+ . +. .....|....++-.+|.+|||....+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 99999999999999999999876533322221111 0 00 11112345678889999999986544
No 145
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.11 E-value=3e-10 Score=104.51 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=97.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---------CC----CeEEEEcCCCCCC----CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LK----ECKIVEGDAEDLP----FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---------~~----~~~~~~~d~~~~~----~~ 172 (337)
++.+|||+|||-|..+.-.... .-..++|+|+|...++.|+++.. .. ...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7889999999998877766665 35799999999999999998861 11 2567888875321 33
Q ss_pred C--CCccEEEeccccccc-CCH---HHHHHHHHHhccCCCEEEEEcCCCCchh--Hhh----------------------
Q 019684 173 T--DYADRYVSAGSIEYW-PDP---QRGIREAYRVLKLGGKACIIGPVYPTFW--LSR---------------------- 222 (337)
Q Consensus 173 ~--~~fD~i~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~---------------------- 222 (337)
+ ..||+|-|.+++|+. .+. ..+++++.+.|+|||+++.+.+...... +..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3 489999999999987 333 3699999999999999998754322110 000
Q ss_pred ----hhh------------hhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 223 ----YFA------------DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 223 ----~~~------------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.+. +........+.+.+++++.|++.|....+..
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 000 0001123578899999999999998877753
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.11 E-value=2.3e-10 Score=97.79 Aligned_cols=103 Identities=26% Similarity=0.330 Sum_probs=78.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCC-CC--CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAED-LP--FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~-~~--~~~~~fD~i~~~~~l 185 (337)
..+||||||.|.++..+|...|+..++|+|++...+..+.++. ...|+.++++|+.. +. ++++++|.|+..+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999999999988887653 34789999999976 32 556889999875433
Q ss_pred cccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 186 EYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 186 ~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
-+.... ..++..+.++|+|||.|.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 322211 27999999999999999987653
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.10 E-value=1.6e-09 Score=104.40 Aligned_cols=138 Identities=16% Similarity=0.141 Sum_probs=96.9
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC-
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL- 169 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~- 169 (337)
++.+.+.+++.+.. .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++.. .+++++.+|+.+.
T Consensus 282 ~e~l~~~vl~~l~~-~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDP-QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 35556666665544 36789999999999999999988 57999999999999999987532 4689999998542
Q ss_pred ---CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 170 ---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 170 ---~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
++.+++||+|++.---.- ....++.+.+ ++|++.++++... .+ + ..++ ..|.+.||
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp-~t--l-------------aRDl-~~L~~~gY 417 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNP-AT--L-------------ARDA-GVLVEAGY 417 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeCh-HH--h-------------hccH-HHHhhCCc
Confidence 244567999997432221 2345555555 6898888887421 11 0 1112 24567899
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++.++..+.
T Consensus 418 ~l~~i~~~D 426 (443)
T PRK13168 418 RLKRAGMLD 426 (443)
T ss_pred EEEEEEEec
Confidence 999888875
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.08 E-value=8.7e-10 Score=99.32 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=79.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
.+.+||+||||+|..+..+.+..+..+++++|+++.+++.+++... .++++++.+|..+ +...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999988887556789999999999999998642 2467888888743 2222468999998
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.......+. ..++++.+.+.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654322222 3578999999999999999863
No 149
>PLN02366 spermidine synthase
Probab=99.08 E-value=1e-09 Score=100.04 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCCC-C-CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-P-FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~-~~~~~fD~i 179 (337)
+++++||+||||.|..+..+++..+..+|+.+|+++.+++.+++... .++++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 36789999999999999999887334689999999999999998642 36799999997432 1 225679999
Q ss_pred EecccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 180 VSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++...-.+.+. ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98543332222 2468999999999999997653
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=1.8e-09 Score=93.54 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC---CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++.. ++.++.+|+...++ +++||+|+++--+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 46799999999999999988764 35699999999999999998763 57899999976554 46899999963333
Q ss_pred cc--CC----------HHHHHHHHHHhccCCCEEEEEcCCCC-chhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 187 YW--PD----------PQRGIREAYRVLKLGGKACIIGPVYP-TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 187 ~~--~~----------~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
-. .+ ...+++.+.++++||+. ++-....+ .+.-..++. +..-.+.....+++++.|+..
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFR--QDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCcccee--eccCcccHHHHHHHHhcCeee
Confidence 11 11 23688888886666664 33211111 010001100 001124567888999999863
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.06 E-value=6e-10 Score=112.91 Aligned_cols=128 Identities=20% Similarity=0.175 Sum_probs=94.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCC-CCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDL-PFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~-~~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+.. .+++++++|+.+. ....++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999886 345799999999999999988532 3588999998542 11145799999842
Q ss_pred -----------cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 184 -----------SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 184 -----------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+.....+...++..+.++|+|||.+++...... . ..-.+.+.++|+....+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~----------------~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-F----------------KMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-C----------------ChhHHHHHhCCCeEEEEe
Confidence 111123445788999999999999987654221 1 112678888999987776
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
..+
T Consensus 680 ~~~ 682 (702)
T PRK11783 680 AKT 682 (702)
T ss_pred cCC
Confidence 654
No 152
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.05 E-value=8.1e-10 Score=97.28 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=80.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCC-C-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-P-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~-----~~~~~fD~ 178 (337)
++++|||||||+|..+..++...+ +.+++++|+++++++.|+++... .+++++.+|+.+. + .++++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 678999999999999998888754 57999999999999999987532 4689999999552 2 12467999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+....- +.....+..+.+.|+|||.+++.+..
T Consensus 148 VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 148 AFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9874321 34467899999999999998876543
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.02 E-value=7.1e-10 Score=100.06 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=91.0
Q ss_pred hhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCC
Q 019684 83 VYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKE 158 (337)
Q Consensus 83 ~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~ 158 (337)
..+.++.....+...+..++..-.+. +++.|||||||+|.++...++. +..+|+++|.|..+ +.|.+... ...
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf-~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~~~i 110 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLF-KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGLEDV 110 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhc-CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCccce
Confidence 44455555555666666666555544 7899999999999999988887 46789999997655 66665533 234
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccccc---CCHHHHHHHHHHhccCCCEEE
Q 019684 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 159 ~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 209 (337)
++++.+.++++.++.+++|+|++-++-.++ .-.+.++-.=-+.|+|||.++
T Consensus 111 i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 111 ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 889999998876667789999996554433 234567777779999999875
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.01 E-value=1.1e-09 Score=103.28 Aligned_cols=104 Identities=19% Similarity=0.058 Sum_probs=77.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCCC----CCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP----FPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~----~~~~~fD~i~ 180 (337)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+++... .+++++++|+.+.. ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876654 345999999999999999987542 25789999986531 1245799999
Q ss_pred eccccccc---------CCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIEYW---------PDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+.--...- .+...++..+.++|+|||.++.....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 86322111 12345667788999999999876543
No 155
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.01 E-value=1.1e-09 Score=93.30 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCCEEEEEcCcccH----HHHHHHhh----CC-CCeEEEEeCCHHHHHHHHhhC----------------------C---
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKH----VD-AKNVTILDQSPHQLAKAKQKE----------------------P--- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~----~~-~~~v~gvD~s~~~~~~a~~~~----------------------~--- 155 (337)
+.-+|+.+||++|. ++..+.+. .+ ..+++|+|+|+.+++.|++-. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999995 33334441 11 379999999999999998510 0
Q ss_pred ------CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEc
Q 019684 156 ------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 156 ------~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+++|...|+.+.+...+.||+|+|.+|+.++... .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 035899999997733445679999999999999765 579999999999999999863
No 156
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.01 E-value=5.1e-09 Score=93.07 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=99.2
Q ss_pred HHhhhhhHhhhcccCCCcchHHHHHHhccccCCCC--CCCEEEEEcCcccH----HHHHHHhhCC-----CCeEEEEeCC
Q 019684 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN--RNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQS 143 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s 143 (337)
.+.+.....-..++...+..+.+...++..+.... ..-+|+-+||+||. ++..+.+..+ ..+|+|+|+|
T Consensus 59 ~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId 138 (268)
T COG1352 59 AFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDID 138 (268)
T ss_pred HHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECC
Confidence 44454554455566655556666776665432211 35799999999994 5555666654 4899999999
Q ss_pred HHHHHHHHhhC----------------------CC----------CCeEEEEcCCCCCCCCCCCccEEEecccccccCCH
Q 019684 144 PHQLAKAKQKE----------------------PL----------KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP 191 (337)
Q Consensus 144 ~~~~~~a~~~~----------------------~~----------~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~ 191 (337)
..+++.|++-. .. ..|.|...|+.+.+...+.||+|+|.+|+.+++.+
T Consensus 139 ~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~ 218 (268)
T COG1352 139 LSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE 218 (268)
T ss_pred HHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHH
Confidence 99999998421 00 23778889986544345569999999999999766
Q ss_pred --HHHHHHHHHhccCCCEEEEE
Q 019684 192 --QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 192 --~~~l~~~~~~LkpgG~l~i~ 211 (337)
.++++.++..|+|||.|++-
T Consensus 219 ~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 219 TQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEc
Confidence 47999999999999999985
No 157
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.00 E-value=4.5e-09 Score=94.62 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=78.2
Q ss_pred CCEEEEEcCcccH----HHHHHHhhCC----CCeEEEEeCCHHHHHHHHhhC------------------------C---
Q 019684 111 NMLVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE------------------------P--- 155 (337)
Q Consensus 111 ~~~VLDiGcG~G~----~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~------------------------~--- 155 (337)
.-+|+..||.||. ++..+.+..+ ..+|+|+|+|+.+++.|++-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 3344444322 378999999999999998531 0
Q ss_pred -------CCCeEEEEcCCCCCCCC-CCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEE
Q 019684 156 -------LKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 156 -------~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++|...|+.+.+++ .+.||+|+|.+++.|+++ ..++++++++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 02368999999764432 567999999999999965 458999999999999998775
No 158
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.98 E-value=3.2e-09 Score=89.59 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=103.2
Q ss_pred hhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCe---------EEEEeCCHHHHHHHHhhC
Q 019684 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKN---------VTILDQSPHQLAKAKQKE 154 (337)
Q Consensus 84 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~~~~a~~~~ 154 (337)
|.....+.+..+.++..++..+... ++..|||.-||+|.++++.+....... ++|+|+++.+++.+++|+
T Consensus 3 yR~~~~~a~L~~~lA~~ll~la~~~-~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 3 YRPFFGPAPLRPTLAAALLNLAGWR-PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp TTTSSSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHhCCC-CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 4445566777888888888888774 788999999999999988776644444 899999999999999885
Q ss_pred CC----CCeEEEEcCCCCCCCCCCCccEEEeccccccc-CC-------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 155 PL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW-PD-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 155 ~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~-~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
.. ..+.+.+.|+.++++.++++|.|+++--...- .+ ...+++++.++|++ ..+++....
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~-------- 152 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN-------- 152 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC--------
T ss_pred HhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC--------
Confidence 42 34789999999998777899999996444322 11 13678999999999 434333221
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+.+.++..+++..+.....
T Consensus 153 ------------~~~~~~~~~~~~~~~~~~~~~ 173 (179)
T PF01170_consen 153 ------------RELEKALGLKGWRKRKLYNGH 173 (179)
T ss_dssp ------------CCHHHHHTSTTSEEEEEEETT
T ss_pred ------------HHHHHHhcchhhceEEEEEec
Confidence 234556777777776666554
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=92.71 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=82.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--C-CeEEEEcCCCCC---CCCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K-ECKIVEGDAEDL---PFPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~-~~~~~~~d~~~~---~~~~~~fD~i~~~~~l 185 (337)
..+||||||.|.++..+|...|...++|||+....+..|.+.+.. - |+.+++.|+..+ -+++++.|-|+..+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 589999999999999999999999999999999888888766432 3 889999999553 2455589999975443
Q ss_pred cccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 186 EYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 186 ~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
-|.... ..+++.+.++|+|||.|.+.+..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 333221 27999999999999999998654
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.94 E-value=1e-08 Score=93.67 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=95.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-----CeEEEE-cCCCCCC----CCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVE-GDAEDLP----FPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~-~d~~~~~----~~~~~fD~i 179 (337)
++.+|||||||+|.+...++...++++++|+|+++.+++.|+++.... ++++.. .|..++. ..++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999988888888777899999999999999999886543 355543 3332221 235689999
Q ss_pred EecccccccCCH-----HHHHHH----------------HHHhccCCCEEEEEcCCCCchhHhhhhhhhhc-----cCCC
Q 019684 180 VSAGSIEYWPDP-----QRGIRE----------------AYRVLKLGGKACIIGPVYPTFWLSRYFADVWM-----LFPK 233 (337)
Q Consensus 180 ~~~~~l~~~~~~-----~~~l~~----------------~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~ 233 (337)
+|+=-++.-.+. .+-.+. ..+++.+||.+.++........ .......|. ...+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~-~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK-AFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH-HHHhhCcEEEEEeeccCC
Confidence 997555432221 111222 2355668888877765433221 000011111 2247
Q ss_pred HHHHHHHHHhCCCcEEEEEEcC
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...+.+.|++.|...+.+.++.
T Consensus 273 l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 273 LPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred HHHHHHHHHHcCCceEEEEEEe
Confidence 8999999999999888887774
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.94 E-value=7.3e-09 Score=88.63 Aligned_cols=119 Identities=13% Similarity=0.040 Sum_probs=80.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC-
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED- 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~- 168 (337)
.++.+.+.++..+....++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++++.. .+++++.+|+.+
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 3444444444433211256899999999999998755553 47999999999999999987532 368899999854
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHh--ccCCCEEEEEcC
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRV--LKLGGKACIIGP 213 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~i~~~ 213 (337)
++...++||+|++.--.. -.-...+++.+... |+|++.+++...
T Consensus 115 l~~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 115 LAQPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhhcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 222244699999865532 12234555666553 789998888754
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.93 E-value=6.3e-09 Score=89.50 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=83.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEE-cCCCC-CC-CCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVE-GDAED-LP-FPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~-~d~~~-~~-~~~~~fD~i~~ 181 (337)
+.++|||||++.|..++.|+...| ..+++.+|.++++.+.|+++... +++..+. +|..+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 678999999999999999999988 78999999999999999988543 3477777 57743 22 45688999995
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
-..= .+....++.+.++|+|||.+++-+....
T Consensus 139 DadK---~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 139 DADK---ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred eCCh---hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 4322 2446899999999999999988655443
No 163
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=4.7e-09 Score=94.64 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=67.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~ 175 (337)
.+.+.+++.+... ++.+|||||||+|.++..+++.. .+|+|+|+++.+++.++++....+++++++|+.++++++-.
T Consensus 29 ~i~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 29 NILDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC
Confidence 4455555555543 67899999999999999999984 49999999999999999887557899999999887765422
Q ss_pred ccEEEecc
Q 019684 176 ADRYVSAG 183 (337)
Q Consensus 176 fD~i~~~~ 183 (337)
+|.|+++-
T Consensus 106 ~~~vv~Nl 113 (272)
T PRK00274 106 PLKVVANL 113 (272)
T ss_pred cceEEEeC
Confidence 57777753
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.90 E-value=1.4e-08 Score=93.60 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=84.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPF-PTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++.. .+++|+++|+.++.. ..+.||+|++.---
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999999986 68999999999999999987532 468999999976432 23569999976321
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. .....+.+....++|++.++++.... . -..++..+ .||+..++..+.
T Consensus 251 ~---G~~~~~~~~l~~~~~~~ivyvsc~p~-t---------------~~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 R---GIGKELCDYLSQMAPRFILYSSCNAQ-T---------------MAKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C---CccHHHHHHHHHcCCCeEEEEECCcc-c---------------chhHHhhc---cCcEEEEEEEec
Confidence 1 11122333344467877776654321 1 12233333 589988887764
No 165
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.90 E-value=4e-09 Score=93.63 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----C----CeEEEEcCCCC------CCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAED------LPFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~----~~~~~~~d~~~------~~~~~ 173 (337)
+++..++|+|||-|..++-..+. +-..++|+|+++..++.|+++... . .+.|+.+|... +++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 57889999999999988777665 346899999999999999987532 1 26788888743 34456
Q ss_pred CCccEEEeccccccc-CCH---HHHHHHHHHhccCCCEEEEEcCCCCchhH-------hhhhhhhh--------------
Q 019684 174 DYADRYVSAGSIEYW-PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWL-------SRYFADVW-------------- 228 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~-------------- 228 (337)
.+||+|-|.+++|+. .+. ..+++++.+.|+|||+++-+-|....... ..+-.+++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~ 274 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDV 274 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCC
Confidence 669999999999975 332 46899999999999999887654321100 00111110
Q ss_pred ------------------ccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 229 ------------------MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 229 ------------------~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
..+..-..+.+++++.|++.|.+..+..
T Consensus 275 p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~d 320 (389)
T KOG1975|consen 275 PPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFAD 320 (389)
T ss_pred CCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHH
Confidence 0012357888999999999998887753
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.88 E-value=1.8e-08 Score=96.91 Aligned_cols=137 Identities=24% Similarity=0.324 Sum_probs=93.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC---
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL--- 169 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~--- 169 (337)
.+...++..+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++.. .+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~~-~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 279 KLVDRALEALEL-QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhcc-CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 344444444433 35689999999999999999987 56899999999999999987532 4789999998542
Q ss_pred -CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 170 -PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 170 -~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+..+++||+|++.---. .-...+++.+.+ ++|++.++++.. +. |...-...|.+.||+.
T Consensus 356 ~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~--p~---------------tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCN--PA---------------TLARDLEFLCKEGYGI 415 (431)
T ss_pred HHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCC--HH---------------HHHHHHHHHHHCCeeE
Confidence 23345799999643211 112456666554 889887776532 11 1112234567789988
Q ss_pred EEEEEcC
Q 019684 249 VQLKRIG 255 (337)
Q Consensus 249 v~~~~~~ 255 (337)
..+..+.
T Consensus 416 ~~~~~~D 422 (431)
T TIGR00479 416 TWVQPVD 422 (431)
T ss_pred EEEEEec
Confidence 7777654
No 167
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.88 E-value=3.5e-08 Score=88.06 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=90.3
Q ss_pred hhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 019684 71 KEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (337)
Q Consensus 71 ~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a 150 (337)
..-+.||++....-+.+... ..+..+.+.++...... .++.|||+|||+|.++...+.. +..+|++++- .+|.+.|
T Consensus 140 ~~YF~~YG~L~~QQNMmQDY-VRTgTY~~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA 215 (517)
T KOG1500|consen 140 SQYFQFYGYLSQQQNMMQDY-VRTGTYQRAILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYA 215 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHH
Confidence 33456777776655443221 22233334444433222 6889999999999998877766 5678999998 5788888
Q ss_pred HhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEE
Q 019684 151 KQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 151 ~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i 210 (337)
++.... .++.++.+-++++.+++ +.|+|++--+-..+-+. -+..-..++.|||.|.++-
T Consensus 216 ~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 216 RKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred HHHHhcCCccceEEEccCccccccCch-hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 876543 45889999999887765 49999985433323232 2344556799999999864
No 168
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.88 E-value=4e-08 Score=83.45 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=93.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEeccccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSIEYW 188 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~~~l~~~ 188 (337)
.++|||||=+...... ..+-.+|+.||+++. .-.+.+.|+.+.|. ++++||+|.++-||.++
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCCC------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 6999999976554332 234578999999651 12356778866554 46789999999999999
Q ss_pred CCHH---HHHHHHHHhccCCCE-----EEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 189 PDPQ---RGIREAYRVLKLGGK-----ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 189 ~~~~---~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
|++. +.++.+++.|+|+|. |+++-|...- ....+.+.+.|.++|+..||+.++.+....
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------TNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------hcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 9986 699999999999999 8888664321 112466889999999999999999977763
No 169
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.88 E-value=8.3e-08 Score=85.25 Aligned_cols=141 Identities=21% Similarity=0.128 Sum_probs=102.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------------------------C-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------------------------P- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------------------------~- 155 (337)
...+||-.|||.|.++..++.. +..+.|.|.|--|+-...-.+ .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4679999999999999999999 899999999988864433100 0
Q ss_pred ---------CCCeEEEEcCCCCCCCCC---CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh
Q 019684 156 ---------LKECKIVEGDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (337)
Q Consensus 156 ---------~~~~~~~~~d~~~~~~~~---~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 223 (337)
..++....+|+.+.-..+ ++||+|++.+.+.-.++.-..++.|.++|||||..+=..|..-......
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~- 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS- 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-
Confidence 023556677776544333 6899999998888888888999999999999997766655432211000
Q ss_pred hhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
...-...-.+.+++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000001235789999999999999988776
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.85 E-value=1.6e-08 Score=90.48 Aligned_cols=86 Identities=26% Similarity=0.331 Sum_probs=69.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++++|+.+++++
T Consensus 15 ~~~~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 15 DRVVDRIVEYAEDT-DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP- 90 (258)
T ss_pred HHHHHHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch-
Confidence 34455555555543 6789999999999999999998 5799999999999999998764 36799999999887754
Q ss_pred CCccEEEecccc
Q 019684 174 DYADRYVSAGSI 185 (337)
Q Consensus 174 ~~fD~i~~~~~l 185 (337)
.||.|+++--.
T Consensus 91 -~~d~Vv~NlPy 101 (258)
T PRK14896 91 -EFNKVVSNLPY 101 (258)
T ss_pred -hceEEEEcCCc
Confidence 48999886554
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.84 E-value=1e-08 Score=86.03 Aligned_cols=105 Identities=20% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCC-C--C-CCCCCccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAED-L--P-FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~-~--~-~~~~~fD~ 178 (337)
.++.+|||+|||+|..++.++...+..+|+..|.++ .++..+.+.. ..++.+...|..+ . . ....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 378999999999999999988886678999999988 8888877643 2456777777643 1 1 23457999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+...+++.-.....+++-+.++|+|+|.+++....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999998777788999999999999997776543
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.7e-08 Score=83.55 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.+.+|+|+|||||.+++..+-. +..+|+++|+++++++.+++|..+ .++.|+++|+.+.. ..+|.++.+--+..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 6789999999999999987766 457999999999999999998653 46899999998864 56888887644432
Q ss_pred c---CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 W---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
. .| ..++..+.+.- .++.+-+ ...+.+-+.+..+++|+++......
T Consensus 121 ~~rhaD-r~Fl~~Ale~s----~vVYsiH----------------~a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS----DVVYSIH----------------KAGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccccCC-HHHHHHHHHhh----heEEEee----------------ccccHHHHHHHHHhcCCeEEEEEEE
Confidence 2 23 23444444433 1111111 1225677888999999998777544
No 173
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.81 E-value=9.9e-09 Score=88.20 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=81.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CC-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~-----~~~~~fD~ 178 (337)
+.++||||||++|..+..+++..| +.+|+.+|++++..+.|+++.. ..+++++.+|+.+ ++ ...++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 568999999999999999998876 5899999999999999987643 2569999999854 22 11357999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
|+.-..= .+....++.+.++|+|||.+++-+....
T Consensus 125 VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDADK---RNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEcccc---cchhhHHHHHhhhccCCeEEEEcccccc
Confidence 9975532 3456788899999999999998765443
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.81 E-value=5.3e-08 Score=84.92 Aligned_cols=134 Identities=17% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHH-HHhhCCCCCe-EEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-KIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~-~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.|+.. .+++ +++ .+...|+... +..-..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 36789999999999999999987 45689999999988876 3322 232 2333444422 211124665554
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEE-EcCCCCchhHh--h--hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACI-IGPVYPTFWLS--R--YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i-~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+.. .++..+.+.|+| |.+++ ..|-++..... . ...+.-.+..-.+.+...+.+.||++..+....
T Consensus 150 S~~--------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 150 SLI--------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred ehH--------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 432 257889999999 66554 33322111100 0 000000011234667778888999987776653
No 175
>PLN02476 O-methyltransferase
Probab=98.81 E-value=1.5e-08 Score=90.53 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CC-C----CCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LP-F----PTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~-~----~~~~fD~ 178 (337)
+.++||||||++|..++.++...| +.+++.+|.+++..+.|+++... .+++++.+|+.+ ++ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 578999999999999999998764 57899999999999999987532 468999999844 32 1 1357999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+.-.- -.+....++.+.++|+|||.+++-+..
T Consensus 198 VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 198 AFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 996542 124567899999999999999876543
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.6e-08 Score=83.48 Aligned_cols=97 Identities=24% Similarity=0.254 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCC-------------CCeEEEEcCCCCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL-------------KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~-------------~~~~~~~~d~~~~~~~~ 173 (337)
.+|.+.||+|+|+|.++..++... ++..++|||.-++.++.+++++.. .++.++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 489999999999999999888665 345569999999999999987532 35788999998877778
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.+||.|++... ..+..+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 89999998733 334567788899999999874
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.78 E-value=3e-08 Score=96.80 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
....+||||||.|.++..+|..+|...++|+|++...+..+.++.. -.|+.++..|+..+ -++++++|.|+..+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 5678999999999999999999999999999999987777665532 25788888887432 267788999997654
Q ss_pred ccccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
=-|.... ..+++.+.++|||||.+.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 4433221 27999999999999999988654
No 178
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.76 E-value=6.7e-09 Score=97.97 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=74.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEE---eCCHHHHHHHHhhCCCCCeEEEEcC--CCCCCCCCCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECKIVEGD--AEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~d--~~~~~~~~~~fD~i~~~~~l~ 186 (337)
..+||||||+|.++..|.++ +..++.+ |..+.+++.|.++.. -...+- ...+||++++||+|+|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGv----pa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGV----PAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCc----chhhhhhccccccCCccchhhhhcccccc
Confidence 47899999999999999998 5554443 444567777776532 222222 367899999999999998887
Q ss_pred ccCCH-HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 187 YWPDP-QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 187 ~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.+... ..+|-++.|+|+|||+++++.+...
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecCCccc
Confidence 66433 4689999999999999999876433
No 179
>PLN02823 spermine synthase
Probab=98.74 E-value=9.4e-08 Score=88.18 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=78.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
..++||.||+|.|..+..+.+..+..+++.+|+++.+++.|++... .++++++.+|+.. +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999998887556789999999999999998753 3679999999854 3334568999998
Q ss_pred ccccccc---CC----HHHHHH-HHHHhccCCCEEEEE
Q 019684 182 AGSIEYW---PD----PQRGIR-EAYRVLKLGGKACII 211 (337)
Q Consensus 182 ~~~l~~~---~~----~~~~l~-~~~~~LkpgG~l~i~ 211 (337)
... ... +- -.++++ .+.+.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 631 111 00 136777 899999999998775
No 180
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.71 E-value=1.9e-07 Score=83.35 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=65.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
..+...+++.+... ++.+|||||||+|.++..+++.. .+++++|+++.+++.++++.. ..+++++.+|+.+.++.
T Consensus 15 ~~i~~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 15 ESVIQKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-
Confidence 34555556555543 67899999999999999999984 579999999999999998754 36799999999887764
Q ss_pred CCcc---EEEecc
Q 019684 174 DYAD---RYVSAG 183 (337)
Q Consensus 174 ~~fD---~i~~~~ 183 (337)
.+| .|+++-
T Consensus 91 -~~d~~~~vvsNl 102 (253)
T TIGR00755 91 -DFPKQLKVVSNL 102 (253)
T ss_pred -HcCCcceEEEcC
Confidence 366 666543
No 181
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.71 E-value=2.6e-07 Score=77.98 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=91.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHH---HHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL---AKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~---~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.+++|||+|.|.-++.++-.+|..+++.+|.+..-+ +.+.+.+.-.|++++++.+++ +....+||+|++..+-
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 389999999999999999999999999999998544 444445555789999999988 5556789999998654
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....+++-+...+++||.+++.--..... ..++....++..|.+...+..+.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG~~~~~--------------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKGPDAEE--------------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEESS--HH--------------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcCCChHH--------------HHHHHHhHHHHhCCEEeeecccc
Confidence 56788999999999999998764321111 12345566777788777776653
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.70 E-value=5.6e-08 Score=88.27 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=68.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~ 170 (337)
..+...+++..... ++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++.+|+.+.+
T Consensus 22 ~~i~~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHHhcCCC-CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 34555555555553 7789999999999999999987 5789999999999999998753 357999999997755
Q ss_pred CCCCCccEEEecccccccCC
Q 019684 171 FPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~ 190 (337)
+ ..||.|+++-- .++..
T Consensus 99 ~--~~~d~VvaNlP-Y~Ist 115 (294)
T PTZ00338 99 F--PYFDVCVANVP-YQISS 115 (294)
T ss_pred c--cccCEEEecCC-cccCc
Confidence 4 35898887543 34444
No 183
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.69 E-value=1.4e-07 Score=88.98 Aligned_cols=122 Identities=9% Similarity=-0.018 Sum_probs=85.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++.. .+++|+.+|+.+.. ...++||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999976 67999999999999999987532 36899999986532 112459999875332
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.. -...+++.+. .++|++.++++.. +.. + ..++..+ .||++.++..+.
T Consensus 311 ~G--~~~~~l~~l~-~~~p~~ivyvsc~--p~T-l-------------aRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RG--IGKELCDYLS-QMAPKFILYSSCN--AQT-M-------------AKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CC--CcHHHHHHHH-hcCCCeEEEEEeC--HHH-H-------------HHHHHHh---cCceEEEEEEec
Confidence 11 1235555554 4789888887642 111 1 1223333 699988887765
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.5e-07 Score=75.02 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=91.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
..-+||||||+|..+..++... |+..+.++|++|.+++...+.+.. .+++.++.|+.+ ....++.|+++.+--..-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcCc
Confidence 5779999999999999988875 567899999999999887765433 346788888855 223378999887422211
Q ss_pred cC-----------------C----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 188 WP-----------------D----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 188 ~~-----------------~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
-+ + .++++.++-..|.|.|.+++.....+ .++++.+.++.-||
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------KPKEILKILEKKGY 186 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------CHHHHHHHHhhccc
Confidence 10 0 13677778888999999998765432 35777889999999
Q ss_pred cEEEEEE
Q 019684 247 KDVQLKR 253 (337)
Q Consensus 247 ~~v~~~~ 253 (337)
.......
T Consensus 187 ~~~~~~~ 193 (209)
T KOG3191|consen 187 GVRIAMQ 193 (209)
T ss_pred ceeEEEE
Confidence 7655433
No 185
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.66 E-value=7.6e-07 Score=72.11 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=92.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--- 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--- 170 (337)
..+++........ ..+.-|||+|.|||.++..+.++ .+...+++++.|++......+... .+.++.+|+.++.
T Consensus 34 s~lA~~M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~l~~~l 110 (194)
T COG3963 34 SILARKMASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHHHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--CccccccchhhHHHHH
Confidence 3344455555444 36789999999999999998877 345789999999999999988765 4558899987654
Q ss_pred --CCCCCccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCC
Q 019684 171 --FPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 --~~~~~fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+..||.|+|.--+-.++-.. ++++++...|.+||.++.....
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4567799999988777776543 6899999999999999887554
No 186
>PRK04148 hypothetical protein; Provisional
Probab=98.64 E-value=1.9e-07 Score=73.97 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcccH-HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~ 183 (337)
++.+|||||||+|. .+..|++. +.+|+++|+++..++.++++ .+.++.+|+.+..+. -+.+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 56899999999996 88888876 88999999999999999865 468999999765432 24599999744
No 187
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=88.44 Aligned_cols=104 Identities=18% Similarity=0.091 Sum_probs=82.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCC-C---CCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDL-P---FPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~-~---~~~~~fD~i 179 (337)
+|++|||+-|=||.++...+.. |+ +|+.||.|...++.|++|... ..+.|+++|+.+. . -...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999998876 66 999999999999999998643 3368999998553 2 233489999
Q ss_pred Eec---------ccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 180 VSA---------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 180 ~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
++- ....-..+...++..+.++|+|||.+++.+...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 982 112222455689999999999999999887643
No 188
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.62 E-value=2.5e-07 Score=78.74 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CC-C-CC-CCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LP-F-PT-DYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~-~-~~-~~fD~i~~ 181 (337)
.+.+|||++||+|.++..++.+. ..+|+++|.++.+++.++++... .+++++.+|+.+ +. . .. ..||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999882 35899999999999999887532 357899999843 22 1 12 23787776
Q ss_pred cccccccCCHHHHHHHHHH--hccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 213 (337)
.--.. ......++..+.+ .|+++|.+++...
T Consensus 128 DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 43332 2233455555544 6888888777644
No 189
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.62 E-value=6.7e-08 Score=85.31 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-------------------------------CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------KE 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------------------------~~ 158 (337)
++.++||||||+-..-..-+..+ --+++..|.++...+..++-+.. ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 57799999999865532222221 34799999998877655431110 01
Q ss_pred e-EEEEcCCCCC-CCCC-----CCccEEEeccccccc-CCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh
Q 019684 159 C-KIVEGDAEDL-PFPT-----DYADRYVSAGSIEYW-PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (337)
Q Consensus 159 ~-~~~~~d~~~~-~~~~-----~~fD~i~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 227 (337)
+ .++.+|+.+. |+.. .+||+|++..+++.. +|. .+.++++.++|||||.|++............ -...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG-~~~F 213 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG-GHKF 213 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET-TEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC-CEec
Confidence 2 3677899653 3332 259999999999876 344 4789999999999999999865433221100 0011
Q ss_pred hccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 228 WMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 228 ~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.....+.+.+++.|+++||++++..
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1234588999999999999998888
No 190
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.60 E-value=7.1e-08 Score=89.53 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++..++|+|||.|.....++.. ....++|+|.++..+..+..... .....++.+|+.+.|++++.||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 35678999999999999988776 57899999999998888775432 23456688999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhhh-----hhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYF-----ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.+|.++...++++++++++|||+++..+...... ...... .+............+++...||..+.+.
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLE 266 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhc
Confidence 9999999999999999999999998864322110 000000 0111111233456678888888877643
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=1.5e-07 Score=83.14 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=79.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCC------CCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPF------PTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~------~~~~fD 177 (337)
+.++|||||+++|..++.++... ++.+++.+|.+++..+.|+++.. ..+++++.+|+.+ ++- ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 56899999999999999999876 46899999999999999987743 3579999999844 221 135899
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+.-.-= ......++.+.+.|+|||.+++-+.
T Consensus 159 ~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 159 FIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 99965431 2345788888999999999887544
No 192
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=7.1e-08 Score=84.80 Aligned_cols=96 Identities=26% Similarity=0.268 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe-EEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+.+..++|+|||.|..+. ..|.+.++|+|++...+..+++. +. ....+|+..+|+.+.+||.+++..++||
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC----CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 368899999999998743 23778899999999998888753 33 5778899999999999999999999999
Q ss_pred cCCH---HHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDP---QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~---~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+... .++++++.|.|+|||...+..
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 9765 479999999999999977753
No 193
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=9.2e-07 Score=77.11 Aligned_cols=132 Identities=19% Similarity=0.265 Sum_probs=100.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC--CC
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP--TD 174 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~--~~ 174 (337)
+..+.+ .+|.+|||-|+|+|.++..+++.. |-.+++.+|+.....+.|.+... ..++++..-|+....|. +.
T Consensus 98 ~~~L~i-~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 98 LSMLEI-RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHhcC-CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 344444 489999999999999999999886 66899999998888877776533 36799999999665443 46
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCC-EEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGG-KACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
.+|.|++ .++.|...+-.+..+||.+| +++-..++.+. .+.-.+.|+++||..++..+
T Consensus 177 ~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQ----------------vqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQ----------------VQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred ccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHHHHH----------------HHHHHHHHHhCCCceEEEEE
Confidence 7898885 57888889999999999877 66655554332 13445789999998887766
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
+-
T Consensus 236 v~ 237 (314)
T KOG2915|consen 236 VL 237 (314)
T ss_pred ee
Confidence 54
No 194
>PRK00536 speE spermidine synthase; Provisional
Probab=98.55 E-value=7.6e-07 Score=79.11 Aligned_cols=123 Identities=13% Similarity=-0.046 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
+..++||=||.|.|..++.+.+. + .+|+-||+++.+++.+++.. ..++++++.. +.+ ...++||+|+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 46799999999999999999998 4 49999999999999999843 3466776652 221 12357999997
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
-.. ....+++.+.+.|+|||.++......- . ... ....+.+.+++ .|..+.....
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~-~-~~~----------~~~~i~~~l~~-~F~~v~~y~~ 200 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVAKHPL-L-EHV----------SMQNALKNMGD-FFSIAMPFVA 200 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECCCCcc-c-CHH----------HHHHHHHHHHh-hCCceEEEEe
Confidence 643 346788999999999999988643211 0 000 12344456666 6886655444
No 195
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.54 E-value=7.8e-07 Score=79.95 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=81.2
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVSA 182 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~i~~~ 182 (337)
.++||-||.|.|..++.+.+..+..+++.+|+++..++.+++... .++++.+.+|..+. .-...+||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 379999999999999999999777899999999999999998643 36788999998543 2223379999985
Q ss_pred ccccccC----CHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWP----DPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..=.--+ .-..+++.+++.|+++|.++...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4433111 11589999999999999999873
No 196
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.54 E-value=3.9e-08 Score=82.12 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=100.9
Q ss_pred hHHHHHHhcccc--CCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC
Q 019684 94 TEDMRDDALEPA--DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF 171 (337)
Q Consensus 94 ~~~~~~~~l~~~--~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~ 171 (337)
.++..+.++... .....+.++||+|.|.|..+..++..+ -+|++.++|..|..+.+++. -.+ ....++.-
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~----ynV--l~~~ew~~ 165 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN----YNV--LTEIEWLQ 165 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC----Cce--eeehhhhh
Confidence 344444444433 122345799999999999999988874 47999999999999888542 111 12222222
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccC-CCEEEEE---------cCCCCchh--HhhhhhhhhccC-CCHHHHH
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL-GGKACII---------GPVYPTFW--LSRYFADVWMLF-PKEEEYI 238 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~i~---------~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 238 (337)
.+-+||+|.|.+++.-..++-+.++.++.+|+| +|++++. +.+....+ ...........+ .....+.
T Consensus 166 t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~ 245 (288)
T KOG3987|consen 166 TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFM 245 (288)
T ss_pred cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHH
Confidence 345699999999999999999999999999999 8988764 11111111 111111111111 1234677
Q ss_pred HHHHhCCCcEEEEEEcC
Q 019684 239 EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~ 255 (337)
++|+++||.+...+...
T Consensus 246 e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 246 ELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHhcCchhhhhhcCC
Confidence 89999999987766654
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.52 E-value=2.6e-07 Score=86.94 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|+.. .++++..+|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 4689999999999999998876556899999999999999988643 345688899865322145699999753 2
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+..++....+.+++||.++++.
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888888899999999983
No 198
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.52 E-value=6e-07 Score=86.08 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHh----hCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQ----KEPLKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~----~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
+..|||||||+|.++...++.. ...+|++||-|+.+....++ +.-..+++++.+|++++..+. ++|+|||-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 5789999999999987665542 24799999999987765533 333367999999999987655 69999984
Q ss_pred ccccccC--CHHHHHHHHHHhccCCCEEE
Q 019684 183 GSIEYWP--DPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 183 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~ 209 (337)
..=.... -..+.+....+.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3322221 22467888999999999875
No 199
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.48 E-value=2.3e-06 Score=82.47 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEe--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVS-- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~-- 181 (337)
+++.+|||+++|+|.-+..+++..+ ...++++|+++..++..++++.. .++.+...|...+. ...+.||.|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4789999999999999999998864 36899999999999888877543 56777888876543 22356999995
Q ss_pred --c--ccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 182 --A--GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 182 --~--~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
+ .++..-++. .++|.++.+.|||||+|+.+++....
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2 222221211 36899999999999999888876543
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.46 E-value=2.6e-07 Score=78.88 Aligned_cols=96 Identities=25% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++..|||..||-|.+++.+++..++..|+++|++|..++..+++.. ..++..+.+|+.++.. .+.||.|++..-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 47899999999999999999996557899999999999988887643 3458899999977654 678999987542
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
- .-..++..+.+++++||.+.
T Consensus 179 ~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEE
T ss_pred H----HHHHHHHHHHHHhcCCcEEE
Confidence 2 22358888999999999874
No 201
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.46 E-value=2e-06 Score=77.57 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCC-CeEE--EEcCC-C-CCCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK-ECKI--VEGDA-E-DLPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~--~~~d~-~-~~~~~~~~fD~i~~~~ 183 (337)
.+.+|||+|||+|.-+..+.+.++ -.+++++|.|+.|++.++...... +... ...+. . ..++ ...|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEeh
Confidence 457999999999988777766665 357999999999999988764321 1110 01111 1 1122 2349999999
Q ss_pred cccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 184 SIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 184 ~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+|..+++. ..+++++.+.+.+ .|+++|+..+... ....+.++.|.+.|+.++
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf------------~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF------------RRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH------------HHHHHHHHHHhhCCCceE
Confidence 99999873 2567777676665 9999998765431 123455666666666643
No 202
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.45 E-value=3.6e-06 Score=68.06 Aligned_cols=101 Identities=29% Similarity=0.320 Sum_probs=74.3
Q ss_pred EEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC--CC-eEEEEcCCCC--CCCCC-CCccEEEeccccc
Q 019684 114 VVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL--KE-CKIVEGDAED--LPFPT-DYADRYVSAGSIE 186 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~--~~-~~~~~~d~~~--~~~~~-~~fD~i~~~~~l~ 186 (337)
++|+|||+|... .+....+. ..++|+|+++.++..++..... .+ +.+...|... .++.+ ..||++ ......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33333222 4899999999999886654321 11 5788888765 67776 489999 554444
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+..+....+.++.+.++|+|.+++......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444488899999999999999998866543
No 203
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.41 E-value=6.8e-07 Score=80.42 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCC-CC--CCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAED-LP--FPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~-~~--~~~~~fD~i~~ 181 (337)
++++|||+-|=||.++...+.. +..+|+.||.|..+++.+++|.. ..+++|+..|+.+ +. -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 6789999999999999987765 33589999999999999998843 2468899999854 21 12458999998
Q ss_pred c------ccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 182 A------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 182 ~------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
- ....-..+..+++..+.++|+|||.|++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2 11111234567899999999999999876553
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.40 E-value=7.9e-07 Score=78.84 Aligned_cols=103 Identities=21% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCC-CccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTD-YADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~-~fD~i~ 180 (337)
+.++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++... .++++++.+|... +.-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 6789999999999999999887556899999999999999997532 3689999999843 222233 799999
Q ss_pred ecccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.-..-...+. -..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8433322221 2589999999999999999865
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.3e-06 Score=75.47 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=74.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
....+.+++.+... +++.|||||+|.|.++..|++. +.+|+++++++.+++..++... ..+++.+.+|+...+++.
T Consensus 16 ~~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 44567777777775 5899999999999999999999 7789999999999999998864 578999999998877664
Q ss_pred C-CccEEEecccccccCC
Q 019684 174 D-YADRYVSAGSIEYWPD 190 (337)
Q Consensus 174 ~-~fD~i~~~~~l~~~~~ 190 (337)
- .++.|+++--. ++..
T Consensus 93 l~~~~~vVaNlPY-~Iss 109 (259)
T COG0030 93 LAQPYKVVANLPY-NISS 109 (259)
T ss_pred hcCCCEEEEcCCC-cccH
Confidence 2 47888875433 3443
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.39 E-value=9.1e-07 Score=80.00 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCC--CC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP--FP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~--~~ 172 (337)
+..++++.+.. .++..+||.+||.|.++..+++.++ ..+|+|+|.++.+++.+++++.. .++.++++|+.++. ..
T Consensus 7 ll~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 44455555544 3678999999999999999999975 68999999999999999987643 57999999997643 12
Q ss_pred C--CCccEEEeccc
Q 019684 173 T--DYADRYVSAGS 184 (337)
Q Consensus 173 ~--~~fD~i~~~~~ 184 (337)
+ .++|.|++...
T Consensus 86 ~~~~~vDgIl~DLG 99 (296)
T PRK00050 86 EGLGKVDGILLDLG 99 (296)
T ss_pred cCCCccCEEEECCC
Confidence 2 27999998433
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=6.3e-06 Score=70.84 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH---HHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~---~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+.+++|||+|.|.-++.++-.+|+.+|+-+|.... .++.+.+.+.-+|++++++.+++.......||+|.++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999998889999999999864 4555556666688999999998876322229999988644
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
+...+.+-+...+|+||.+++.-... . ..-..+.+......||.+..+......
T Consensus 146 --~L~~l~e~~~pllk~~g~~~~~k~~~-------~-------~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 146 --SLNVLLELCLPLLKVGGGFLAYKGLA-------G-------KDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred --chHHHHHHHHHhcccCCcchhhhHHh-------h-------hhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 45667788899999999876431110 0 012356677888889999888887633
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.37 E-value=8e-06 Score=76.40 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=83.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~ 171 (337)
+.+...+++.... .+.+|||++||+|.++..+++.. .+|+|+|+++.+++.+++++.. .+++++.+|+.+.-.
T Consensus 184 ~~l~~~v~~~~~~--~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 184 IKMLEWACEVTQG--SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHhhc--CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 3344444444432 23479999999999999998883 5999999999999999988543 368899999865211
Q ss_pred -----------C-----CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHH
Q 019684 172 -----------P-----TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235 (337)
Q Consensus 172 -----------~-----~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
. ...||+|+..=-- ..-...+++.+.+ |++.++++... .. + ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~~~~~l~~l~~---~~~ivYvsC~p-~t--l-------------aR 318 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPPR--AGLDPDTCKLVQA---YERILYISCNP-ET--L-------------KA 318 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCCC--CCCcHHHHHHHHc---CCcEEEEEcCH-HH--H-------------HH
Confidence 0 1137988863221 1111345555543 77777776421 11 0 12
Q ss_pred HHHHHHHhCCCcEEEEEEcC
Q 019684 236 EYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+. .||++..+..+.
T Consensus 319 Dl~~L~--~~Y~l~~v~~~D 336 (353)
T TIGR02143 319 NLEQLS--ETHRVERFALFD 336 (353)
T ss_pred HHHHHh--cCcEEEEEEEcc
Confidence 333333 348888887765
No 209
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.37 E-value=7.7e-06 Score=76.79 Aligned_cols=134 Identities=15% Similarity=0.066 Sum_probs=85.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC-C
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL-P 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~-~ 170 (337)
+.+.+.+...... .+.+|||++||+|.++..+++. ..+|+|+|.++.+++.+++++.. .+++++.+|+.+. +
T Consensus 193 e~l~~~v~~~~~~--~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 193 EKMLEWALDATKG--SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHhhc--CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 3444444443322 2357999999999999998887 45899999999999999988532 3688999998552 1
Q ss_pred -CC--------------CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHH
Q 019684 171 -FP--------------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235 (337)
Q Consensus 171 -~~--------------~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
+. ..+||+|+..--- ..-..++++.+.+ |++.++++... .. + ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~p-~t--l-------------ar 327 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCNP-ET--L-------------CE 327 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeCH-HH--H-------------HH
Confidence 10 1258999863221 1112345555544 67777766321 11 0 23
Q ss_pred HHHHHHHhCCCcEEEEEEcC
Q 019684 236 EYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+. + ||++.++..+.
T Consensus 328 Dl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 328 NLETLS-Q-THKVERFALFD 345 (362)
T ss_pred HHHHHc-C-CcEEEEEEEcc
Confidence 344343 3 99988887765
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=7e-07 Score=70.52 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=62.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.|++++|+|||.|-+....... ..-.|+|+|++|++++.+.+|+.. -++++.++|+.++-+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 6899999999999998554433 446799999999999999988754 457899999988777778999999865544
No 211
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.33 E-value=5.3e-06 Score=73.30 Aligned_cols=137 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred CEEEEEcCcc--cHHHHHHHh-hCCCCeEEEEeCCHHHHHHHHhhCCC-CC--eEEEEcCCCCCC--CC----CCCcc--
Q 019684 112 MLVVDVGGGT--GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-KE--CKIVEGDAEDLP--FP----TDYAD-- 177 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~-~~--~~~~~~d~~~~~--~~----~~~fD-- 177 (337)
...||||||- -...-.+++ ..|.++|+-+|.+|..+..++..+.. ++ ..++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5799999993 334444544 36899999999999999999987543 45 889999997632 11 12233
Q ss_pred ---EEEecccccccCC---HHHHHHHHHHhccCCCEEEEEcCCCCchh-----Hhhhhhhh--hccCCCHHHHHHHHHhC
Q 019684 178 ---RYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTFW-----LSRYFADV--WMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 178 ---~i~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~l~~a 244 (337)
.+++..++||++| +..+++.++..|.||.+|.++........ ....+... ...+.+.+++..+|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 6778899999965 57899999999999999999865443211 11111111 123568889988888
Q ss_pred CCcEEE
Q 019684 245 GFKDVQ 250 (337)
Q Consensus 245 GF~~v~ 250 (337)
||+.++
T Consensus 228 g~elve 233 (267)
T PF04672_consen 228 GLELVE 233 (267)
T ss_dssp TSEE-T
T ss_pred CCccCC
Confidence 888654
No 212
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=5.4e-07 Score=72.48 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=102.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC------CeEEEEcCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIVEGDAE 167 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~d~~ 167 (337)
+.+...+++..... .+.+|||+|.| +|.-++.++...|...|...|-+++.++..++....+ .+....-+..
T Consensus 15 eala~~~l~~~n~~-rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~ 93 (201)
T KOG3201|consen 15 EALAWTILRDPNKI-RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW 93 (201)
T ss_pred HHHHHHHHhchhHH-hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh
Confidence 34445555544332 57899999999 5666777777788899999999999998887643211 1111111111
Q ss_pred --CCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 168 --DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 168 --~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
.......+||.|++..++..-.......+.|.++|+|.|.-++..|.... +.+.+.+.....|
T Consensus 94 ~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---------------sL~kF~de~~~~g 158 (201)
T KOG3201|consen 94 GAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---------------SLQKFLDEVGTVG 158 (201)
T ss_pred hhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---------------hHHHHHHHHHhce
Confidence 11123458999999999875555568999999999999998887765432 5677888999999
Q ss_pred CcEEEEEEcCc
Q 019684 246 FKDVQLKRIGP 256 (337)
Q Consensus 246 F~~v~~~~~~~ 256 (337)
|.+.-.+.+..
T Consensus 159 f~v~l~enyde 169 (201)
T KOG3201|consen 159 FTVCLEENYDE 169 (201)
T ss_pred eEEEecccHhH
Confidence 99887777663
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=5.6e-06 Score=84.25 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=91.5
Q ss_pred hhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC----C--------------------------
Q 019684 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV----D-------------------------- 133 (337)
Q Consensus 84 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~----~-------------------------- 133 (337)
|.....+.+..+.++..++.......++..++|.+||+|.+++..+... |
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 3333345577888999888887764467899999999999998876521 1
Q ss_pred ------------CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC--CCCccEEEecccccc-cC---CH
Q 019684 134 ------------AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP--TDYADRYVSAGSIEY-WP---DP 191 (337)
Q Consensus 134 ------------~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~--~~~fD~i~~~~~l~~-~~---~~ 191 (337)
..+++|+|+++.+++.|++|+.. ..+.+.++|+.+++.+ .++||+|+++--... +. +.
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l 323 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPAL 323 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHH
Confidence 13699999999999999998543 3478999999776543 357999999743322 11 22
Q ss_pred HHHHHHHHHhcc---CCCEEEEEcC
Q 019684 192 QRGIREAYRVLK---LGGKACIIGP 213 (337)
Q Consensus 192 ~~~l~~~~~~Lk---pgG~l~i~~~ 213 (337)
..+++++.+.++ +|+.+++...
T Consensus 324 ~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 324 IALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 344455444444 8988877654
No 214
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.31 E-value=3.6e-07 Score=77.24 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=82.5
Q ss_pred cchHHHHHHhccccCCC-CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCC
Q 019684 92 HWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~ 166 (337)
+.+..+++.+++.+... -.+.+|||+-||+|.++.....+ +..+|+.||.++..+...++|+.. .++..+..|+
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 44555666555554432 26899999999999999998888 357899999999999999987532 3478888886
Q ss_pred CC-CC---CCCCCccEEEecccccccCC-HHHHHHHHH--HhccCCCEEEEEcCC
Q 019684 167 ED-LP---FPTDYADRYVSAGSIEYWPD-PQRGIREAY--RVLKLGGKACIIGPV 214 (337)
Q Consensus 167 ~~-~~---~~~~~fD~i~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~l~i~~~~ 214 (337)
.. +. ....+||+|++.--.. ... ...++..+. .+|+++|.+++....
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYA-KGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHhhcccCCCceEEEECCCcc-cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 32 22 2457899999853332 222 367777777 789999999887543
No 215
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.28 E-value=4.9e-06 Score=72.69 Aligned_cols=83 Identities=27% Similarity=0.380 Sum_probs=68.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~ 170 (337)
..+...+...+++. +++.|||||.|||.++..+.+. +.+|+++++++.|+....++... ..++++.+|+...+
T Consensus 44 p~v~~~I~~ka~~k-~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLK-PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCC-CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 44667777777775 8899999999999999999999 89999999999999999988543 45889999996654
Q ss_pred CCCCCccEEEec
Q 019684 171 FPTDYADRYVSA 182 (337)
Q Consensus 171 ~~~~~fD~i~~~ 182 (337)
++ .||.++++
T Consensus 121 ~P--~fd~cVsN 130 (315)
T KOG0820|consen 121 LP--RFDGCVSN 130 (315)
T ss_pred Cc--ccceeecc
Confidence 33 49999884
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.24 E-value=1.3e-06 Score=73.94 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC------C--C--CCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------P--F--PTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~------~--~--~~~~fD~ 178 (337)
++.+|||+||++|.|+..+.+.. +..+|+|+|+.+.. ...++.++++|+.+. . + ..+.||+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------cccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 45899999999999999999985 45899999997661 113455555555321 1 1 1258999
Q ss_pred EEecccccccCCH-----------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|++-.......+. ...+.-+.+.|+|||.+++-...
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9997644333221 13555666789999988875443
No 217
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.5e-05 Score=73.00 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC---CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP---FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~---~~~~~fD~i~ 180 (337)
.+|.+|||..++.|.=+..+++...+ ..|+++|.++.-++..+++... .|+..+..|....+ ...++||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 58899999999999999999988643 5679999999988888877543 45667777775433 2223599999
Q ss_pred e------cccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 181 S------AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 181 ~------~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
. ..++.--++. .++|..+.+.|||||.|+.+++..... .+.+.+.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-------------ENE~vV~ 301 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-------------ENEEVVE 301 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-------------cCHHHHH
Confidence 7 2333222221 268999999999999999988765432 1345566
Q ss_pred HHHHhC-CCcEEEE
Q 019684 239 EWFQKA-GFKDVQL 251 (337)
Q Consensus 239 ~~l~~a-GF~~v~~ 251 (337)
..|++. +|+.+..
T Consensus 302 ~~L~~~~~~~~~~~ 315 (355)
T COG0144 302 RFLERHPDFELEPV 315 (355)
T ss_pred HHHHhCCCceeecc
Confidence 667665 5655444
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.20 E-value=6.1e-05 Score=64.49 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=94.2
Q ss_pred chHHHHHHhccc---cCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHH----HHHHHHhhCCCCCeEEEEc
Q 019684 93 WTEDMRDDALEP---ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPH----QLAKAKQKEPLKECKIVEG 164 (337)
Q Consensus 93 ~~~~~~~~~l~~---~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~~ 164 (337)
+...+...++.- ..+ .+|.+||-+|..+|.....+++-.+ ...|++++.|+. .+..|+++ +|+-.+..
T Consensus 54 ~RSKLaAai~~Gl~~~~i-k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~ 129 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPI-KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILE 129 (229)
T ss_dssp TT-HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES
T ss_pred hhhHHHHHHHcCccccCC-CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeec
Confidence 344555555443 334 4899999999999999999988764 789999999994 45555554 78999999
Q ss_pred CCCCCC---CCCCCccEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcC------CCCchhHhhhhhhhhccCCCH
Q 019684 165 DAEDLP---FPTDYADRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGP------VYPTFWLSRYFADVWMLFPKE 234 (337)
Q Consensus 165 d~~~~~---~~~~~fD~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~~~~~~~ 234 (337)
|+.... ..-+.+|+|++.-. .++. +-++.++...||+||.+++.-- ..+.. .. .
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~---~v----------f 193 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE---EV----------F 193 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH---HH----------H
T ss_pred cCCChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH---HH----------H
Confidence 996532 12247999997532 2343 3577888899999999988621 11110 00 1
Q ss_pred HHHHHHHHhCCCcEEEEEEcCc
Q 019684 235 EEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 235 ~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.+-.+.|++.||+..+...+.+
T Consensus 194 ~~e~~~L~~~~~~~~e~i~LeP 215 (229)
T PF01269_consen 194 AEEVKKLKEEGFKPLEQITLEP 215 (229)
T ss_dssp HHHHHHHHCTTCEEEEEEE-TT
T ss_pred HHHHHHHHHcCCChheEeccCC
Confidence 2345678889999999998875
No 219
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.20 E-value=1.1e-05 Score=68.12 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
.+|.+||+||-|-|.....+.+. |..+-+.|+..|+.++..+...- ..|+....+--++. .+++++||.|+-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 48999999999999998887777 44567789999999999998753 35677776665442 267889999998766
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-++..|...+.+.+.++|||+|++-+.+-
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 67778888899999999999999977654
No 220
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.20 E-value=8.4e-06 Score=69.74 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CC-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~-----~~~~~fD~ 178 (337)
.++++||||.=||..+..++...| +.+|+++|++++..+.+.+... ...++++++++.+ ++ ...++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 578999999999999999999876 5899999999999988876532 3568999998843 22 34578999
Q ss_pred EEecccccccC-CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWP-DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
++. .|.. +....+.++.+++|+||.+++-...
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEeccc
Confidence 994 4443 3357899999999999999886533
No 221
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=1.4e-05 Score=73.36 Aligned_cols=124 Identities=22% Similarity=0.179 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
..|.+|||.=+|-|.+++.++..- ..+|+++|++|.+++..++|+.. ..+..+++|+.+....-+.||-|++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~- 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL- 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-
Confidence 469999999999999999999882 33499999999999999988643 237889999987665546799999764
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
..+-..++..+.+.+++||.+.+.+......... .....+.....+.|++
T Consensus 265 ---p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----------~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 265 ---PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE----------RPEKRIKSAARKGGYK 314 (341)
T ss_pred ---CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc----------chHHHHHHHHhhccCc
Confidence 3355678888999999999998876654432111 1245666777777753
No 222
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.15 E-value=3e-05 Score=71.05 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHhhCC-C--CCeEE--EEcCCCCC----CC--CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEP-L--KECKI--VEGDAEDL----PF--PT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~-~--~~~~~--~~~d~~~~----~~--~~ 173 (337)
+++..|+|+|||+|.-+..+.+.+ ...+++++|+|.++++.+.+++. . +.+++ +++|..+. +- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 467789999999998877665543 24789999999999999998765 2 44544 78888542 21 12
Q ss_pred CCccEEEe-cccccccCCHH--HHHHHHHH-hccCCCEEEEE
Q 019684 174 DYADRYVS-AGSIEYWPDPQ--RGIREAYR-VLKLGGKACII 211 (337)
Q Consensus 174 ~~fD~i~~-~~~l~~~~~~~--~~l~~~~~-~LkpgG~l~i~ 211 (337)
....+++. ..++.+++..+ .+|+++++ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 23455554 56888886654 78999999 99999999885
No 223
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=2.5e-05 Score=64.97 Aligned_cols=149 Identities=17% Similarity=0.047 Sum_probs=92.8
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHH----------HHHHHhhCCCCCeEEEEcCCCCCC
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ----------LAKAKQKEPLKECKIVEGDAEDLP 170 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~----------~~~a~~~~~~~~~~~~~~d~~~~~ 170 (337)
|....+ +++.+|+|+=.|.|.|+..++... |...|+++-..+.. -..+++ ....|.+.+..+...+.
T Consensus 41 L~FaGl-kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGL-KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEecc-CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC
Confidence 455555 489999999999999999988875 34577776554321 111111 11234444444444433
Q ss_pred CCCCCccEEEecccccc-------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh
Q 019684 171 FPTDYADRYVSAGSIEY-------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
+.+..|+++.....|. -....++.+++++.|||||.+.+.++......-.+ ......+.+...+.+..+.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~--dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS--DTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh--hhhhhcccChHHHHHHHHh
Confidence 3344666665333322 22346899999999999999999987544311110 1111234578889999999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
+||+..-...+.
T Consensus 196 aGFkl~aeS~il 207 (238)
T COG4798 196 AGFKLEAESEIL 207 (238)
T ss_pred hcceeeeeehhh
Confidence 999987777664
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.12 E-value=3.9e-06 Score=72.11 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=70.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC------------CCCCeEEEE
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKECKIVE 163 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~~~ 163 (337)
.....+++.+.+. +++..+|+|||.|......+...+..+++|||+.+...+.|.... ....+++..
T Consensus 29 ~~~~~il~~~~l~-~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 29 EFVSKILDELNLT-PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHhCCC-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3444555666653 789999999999999888887765556999999998887776421 123477888
Q ss_pred cCCCCCCCCC---CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 164 GDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 164 ~d~~~~~~~~---~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+.+.++.. ...|+|++++... -++....+.+....||+|-+++-..+
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred cCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 8886543211 3479999988653 33445667888888999888765433
No 225
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.12 E-value=1.8e-05 Score=67.99 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred EEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCCCCCccEEEeccccccc
Q 019684 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~i~~~~~l~~~ 188 (337)
|.||||-.|.+...|.+.....+++++|+++.-++.|+++.. ..++++..+|-.+ ++. .+..|.|+...+=...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCCHHH
Confidence 689999999999999999555689999999999999998743 2569999999644 332 2237888876654321
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+++++....++....|++.... ....++++|.+.||.+++-.-+.
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP~~------------------~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQPNT------------------HAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEESS-------------------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeCCC------------------ChHHHHHHHHHCCCEEEEeEEEe
Confidence 346777777777766677765332 45789999999999998887764
No 226
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.5e-05 Score=74.63 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=94.1
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 170 (337)
.+.+....++.+... ++.+|||+=||.|.++..+++. ..+|+|+|+++++++.|++++.. .|++|+.+|+++..
T Consensus 278 ~ekl~~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELA-GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 344555556655543 6789999999999999999977 78999999999999999988643 45889999997654
Q ss_pred C---CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCc
Q 019684 171 F---PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 171 ~---~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
. ....+|.|+..--=.-+ ...+++.+ ..++|-..++++... . |...=...|.+.|++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l-~~~~p~~IvYVSCNP---~--------------TlaRDl~~L~~~gy~ 414 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGA--DREVLKQL-AKLKPKRIVYVSCNP---A--------------TLARDLAILASTGYE 414 (432)
T ss_pred hhccccCCCCEEEECCCCCCC--CHHHHHHH-HhcCCCcEEEEeCCH---H--------------HHHHHHHHHHhCCeE
Confidence 2 23468999852111000 01344444 446777888876421 1 122223577888988
Q ss_pred EEEEEEcC
Q 019684 248 DVQLKRIG 255 (337)
Q Consensus 248 ~v~~~~~~ 255 (337)
+.++..+.
T Consensus 415 i~~v~~~D 422 (432)
T COG2265 415 IERVQPFD 422 (432)
T ss_pred EEEEEEec
Confidence 76666654
No 227
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.09 E-value=7e-05 Score=68.14 Aligned_cols=130 Identities=20% Similarity=0.193 Sum_probs=93.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhh----------CCCCCeEEEEcCCCCC-CCCCCCc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAEDL-PFPTDYA 176 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~~~~d~~~~-~~~~~~f 176 (337)
+.-.+||-+|.|.|.-++.+.+. | ..+++-+|++|.|++.++.+ ..+++++++..|+.++ .-..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 35578999999999999999887 6 57899999999999999843 1236788999998663 2334579
Q ss_pred cEEEecccccccCCH----------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 177 DRYVSAGSIEYWPDP----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 177 D~i~~~~~l~~~~~~----------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
|.|+. .++|| .++..-+.+.|+++|.+++.....- ...+ .--.+..-+++|||
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y--~tp~----------vfw~i~aTik~AG~ 429 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY--FTPR----------VFWRIDATIKSAGY 429 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc--cCCc----------eeeeehhHHHhCcc
Confidence 99985 34443 2688889999999999998743210 0000 01134568899999
Q ss_pred cEEEEEEcCc
Q 019684 247 KDVQLKRIGP 256 (337)
Q Consensus 247 ~~v~~~~~~~ 256 (337)
...-.+..-+
T Consensus 430 ~~~Pyhv~VP 439 (508)
T COG4262 430 RVWPYHVHVP 439 (508)
T ss_pred eeeeeEEecC
Confidence 8776655543
No 228
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=2.4e-05 Score=73.99 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=83.7
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
++|-+|||.-.+...+.+. +...++-+|+|+..++....... .+...+...|+..+.|++++||+|+....++++-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998887776 35679999999999988876642 24588999999999999999999999999988732
Q ss_pred H----------HHHHHHHHHhccCCCEEEEEcC
Q 019684 191 P----------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 191 ~----------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ...+.+++++|+|||+++.+..
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1 2468999999999999877654
No 229
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.08 E-value=3.6e-05 Score=71.28 Aligned_cols=127 Identities=16% Similarity=0.063 Sum_probs=91.4
Q ss_pred cccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-------------------------------
Q 019684 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------------------------------- 134 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~------------------------------- 134 (337)
..-.+.+..+.++..++..+... ++..++|.-||+|.+++..+...++
T Consensus 168 ~~~g~ApLketLAaAil~lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcCCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 33345677888999888888775 5689999999999999988776421
Q ss_pred -C-------eEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccc-cCCH---H----HH
Q 019684 135 -K-------NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEY-WPDP---Q----RG 194 (337)
Q Consensus 135 -~-------~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~-~~~~---~----~~ 194 (337)
. .++|+|+++.+++.|+.|+.. .-++|.++|+..++.+-+.+|+|+|+--..- +.+. . .+
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~f 326 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREF 326 (381)
T ss_pred HHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHH
Confidence 1 377999999999999988644 3489999999887644367999999633321 2222 2 34
Q ss_pred HHHHHHhccCCCEEEEEcC
Q 019684 195 IREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~ 213 (337)
.+.+.+.++--+..++++.
T Consensus 327 g~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 327 GRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHhcCCceEEEEcc
Confidence 4455566666677777654
No 230
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.05 E-value=4e-05 Score=64.17 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=84.6
Q ss_pred cchHHHHHHhccccCC-CCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCC
Q 019684 92 HWTEDMRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~ 166 (337)
+.+..+++.+++.+.. .-.+.++||+-+|+|.++...+.+ +..+++.+|.+.......++|.. ..++.++..|+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 3445555555555543 137899999999999999999888 35789999999999999998843 25578888888
Q ss_pred CCC-CCCCC--CccEEEecccccc-cCCHHHHHHH--HHHhccCCCEEEEEcCC
Q 019684 167 EDL-PFPTD--YADRYVSAGSIEY-WPDPQRGIRE--AYRVLKLGGKACIIGPV 214 (337)
Q Consensus 167 ~~~-~~~~~--~fD~i~~~~~l~~-~~~~~~~l~~--~~~~LkpgG~l~i~~~~ 214 (337)
... +.... +||+|+.---++. +-+....+.. -...|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 532 22222 4999998654441 1222333333 45779999999987553
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.4e-05 Score=66.48 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=73.0
Q ss_pred cccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCC
Q 019684 103 EPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPT 173 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~ 173 (337)
+...+..++.+|+|+|+-+|.|+..+++..+ +..|+|+|+.|.-. .+++.++++|++..+ +..
T Consensus 38 ~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 38 EKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred HhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 3335556899999999999999999988853 35699999955321 256899999996643 334
Q ss_pred CCccEEEecccc--------cccCCH---HHHHHHHHHhccCCCEEEEEcCC
Q 019684 174 DYADRYVSAGSI--------EYWPDP---QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 174 ~~fD~i~~~~~l--------~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+|+|+|-..- +|.... ...+.-+..+|+|||.+++-...
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 557999974322 221111 24677778899999999886543
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=3.9e-05 Score=64.04 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=80.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTD 174 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~ 174 (337)
+.+.++..-+. -.+++|||.|+|+|.-++..+.. +...|+..|+.|......+-|...+. +.+...|.-. .+.
T Consensus 67 lAR~i~~~Pet-VrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~ 141 (218)
T COG3897 67 LARYIDDHPET-VRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHhcCccc-cccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCc
Confidence 33444444333 27899999999999999987777 45789999999888888877765443 5666666644 356
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhcc-CCCEEEEEcCCCC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKACIIGPVYP 216 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~ 216 (337)
.||+++...++..-+...+++. ..+.|+ .|-.+++.++...
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 7999999998876666667777 555554 4555555566544
No 233
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00035 Score=58.74 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=100.8
Q ss_pred chHHHHHHhcccc---CCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCCCC
Q 019684 93 WTEDMRDDALEPA---DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAED 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~---~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~ 168 (337)
+...+...++.-+ ++ +++.+||=+|.-+|.....+++-.+...+++++.|+......-..+ ..+|+-.+..|+..
T Consensus 57 ~RSKLaAaIl~Gl~~~pi-~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 57 RRSKLAAAILKGLKNFPI-KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred chhHHHHHHHcCcccCCc-CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 3455666665544 34 4899999999999999999999988789999999987655444332 23788889999966
Q ss_pred CC---CCCCCccEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcCC--CC-chhHhhhhhhhhccCCCHHHHHHHH
Q 019684 169 LP---FPTDYADRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGPV--YP-TFWLSRYFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 169 ~~---~~~~~fD~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~l 241 (337)
.. .--+..|+|+..-. .++. +-+..++...||+||.+++.--. .. +...... ..+-.+-|
T Consensus 136 P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v----------f~~ev~kL 202 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV----------FKDEVEKL 202 (231)
T ss_pred cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH----------HHHHHHHH
Confidence 32 22345899885321 2333 24678889999999987765211 10 0000011 12334678
Q ss_pred HhCCCcEEEEEEcCc
Q 019684 242 QKAGFKDVQLKRIGP 256 (337)
Q Consensus 242 ~~aGF~~v~~~~~~~ 256 (337)
++.||++.++..+.+
T Consensus 203 ~~~~f~i~e~~~LeP 217 (231)
T COG1889 203 EEGGFEILEVVDLEP 217 (231)
T ss_pred HhcCceeeEEeccCC
Confidence 889999999988875
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.99 E-value=2.4e-05 Score=72.06 Aligned_cols=141 Identities=19% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh-------CCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCCCC-C-CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKH-------VDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPF-P-TD 174 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~-~-~~ 174 (337)
.++.+|+|.+||+|.++..+.+. .+..+++|+|+++.++..|+.++. ..+..+..+|....+. . ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 36778999999999999888763 257899999999999998876531 1234577888744332 2 46
Q ss_pred CccEEEeccccccc--C------C-------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCC
Q 019684 175 YADRYVSAGSIEYW--P------D-------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (337)
Q Consensus 175 ~fD~i~~~~~l~~~--~------~-------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (337)
.||+|+++--+... . + ...++..+.+.|++||++.++-+. ..+.. -..
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~---~~L~~--------~~~ 193 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN---GFLFS--------SSS 193 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH---HHHHG--------STH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc---hhhhc--------cch
Confidence 89999994222111 0 0 125889999999999998776542 11110 001
Q ss_pred HHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
...+++.|-+.+. +..+..+....+..
T Consensus 194 ~~~iR~~ll~~~~-i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 194 EKKIRKYLLENGY-IEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHEE-EEEEEE--TTSSSS
T ss_pred HHHHHHHHHhhch-hhEEeecccceecc
Confidence 2456666655433 55566666655555
No 235
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.98 E-value=3.1e-05 Score=72.62 Aligned_cols=98 Identities=11% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l 185 (337)
+.+|||+.||+|..++.++.+.+ ..+|+++|+++.+++.+++|... .++.+++.|+..+- .....||+|...- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 35899999999999999998753 36899999999999999988643 24778888886532 2235699998744 2
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+..++..+.+.+++||.++++.
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 345679999999999999999983
No 236
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.98 E-value=3.5e-05 Score=76.09 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC-----CCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL-----PFPT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~-----~~~~ 173 (337)
...+|||.|||+|.++..+++..+ ..+++|+|+++..+..++.++.. ..+.....|.... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356899999999999998887653 25789999999999999877432 1244454553211 1112
Q ss_pred CCccEEEec
Q 019684 174 DYADRYVSA 182 (337)
Q Consensus 174 ~~fD~i~~~ 182 (337)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 479999995
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.98 E-value=5.3e-05 Score=69.21 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.++||+||++|.|+..+.+. +.+|++||.++ + +......+++.....|........+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l---~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M---AQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c---CHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 47899999999999999999998 78999999654 2 22233446788888887443222567999998654
Q ss_pred CCHHHHHHHHHHhccCC
Q 019684 189 PDPQRGIREAYRVLKLG 205 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkpg 205 (337)
..|.++++-+.+.|..|
T Consensus 280 e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 EKPARVAELMAQWLVNG 296 (357)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 46788888899999876
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.97 E-value=4.3e-05 Score=68.57 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=77.2
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~ 172 (337)
...+.+.+++.+... ++..|||||+|+|.++..+.+. +.+++++|+++...+..+++.. ..+++++.+|+.++...
T Consensus 15 ~~~~~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLS-EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccH
Confidence 355666677776654 7899999999999999999998 4899999999999999998765 57899999999887654
Q ss_pred C---CCccEEEecccccccCCHHHHHHHHHHhccC
Q 019684 173 T---DYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204 (337)
Q Consensus 173 ~---~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp 204 (337)
+ ..-..|+++--. ++ -..++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 4 334556654222 22 23566666664444
No 239
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=5.1e-06 Score=66.42 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHH
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~ 192 (337)
-.+-||||. .+..|+...+-++-. +.+++++......+|.+++.|+|++.++++|+.-.+
T Consensus 5 ~kv~ig~G~-------~r~npgWi~~d~ed~-------------~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E 64 (185)
T COG4627 5 EKVKIGAGG-------KRVNPGWIITDVEDR-------------PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE 64 (185)
T ss_pred eEEEEeccc-------cccCCCceeeehhcc-------------cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH
Confidence 467789997 333466655433221 123333333355679999999999999999997543
Q ss_pred --HHHHHHHHhccCCCEEEEEcCC
Q 019684 193 --RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 193 --~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+++++++.|||||+|-+.-+.
T Consensus 65 g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 6899999999999999988654
No 240
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=9.6e-05 Score=63.77 Aligned_cols=147 Identities=20% Similarity=0.171 Sum_probs=95.7
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEcCCCCCC---CCCCCcc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLP---FPTDYAD 177 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~d~~~~~---~~~~~fD 177 (337)
++...+..++..+||||+.||.++..+.+. +..+|+++|..-.++..--++- ++ +.+...|+..+. +.+ ..|
T Consensus 71 le~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d--~rV~~~E~tN~r~l~~~~~~~-~~d 146 (245)
T COG1189 71 LEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRND--PRVIVLERTNVRYLTPEDFTE-KPD 146 (245)
T ss_pred HHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcC--CcEEEEecCChhhCCHHHccc-CCC
Confidence 444444458999999999999999999887 4578999999988877655432 33 334445665432 323 588
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEE-cCCCCchhHhh----hhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII-GPVYPTFWLSR----YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++++--++. ....+|..+..+++|++.++.. -|-++.....- ...+......-.+.+.+++++.||.+..+.
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 999876555 4567999999999999887653 22221110000 000100111235678889999999988776
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 224 ~Sp 226 (245)
T COG1189 224 KSP 226 (245)
T ss_pred ccC
Confidence 543
No 241
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.89 E-value=1.5e-05 Score=65.63 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=50.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC--CCCCC-ccEEEe
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPTDY-ADRYVS 181 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~--~~~~~-fD~i~~ 181 (337)
..|+|+.||.|..++.+++. ..+|+++|+++..++.|+.|+. ..+++++++|+.++. ..... ||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 36999999999999999999 5689999999999999998742 467999999996532 22222 899997
No 242
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.83 E-value=6.8e-05 Score=62.84 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----------CCCeEEEEcCCCC-CCCCCCCccEE
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIVEGDAED-LPFPTDYADRY 179 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~-~~~~~~~fD~i 179 (337)
.-.+.|||||-|.++..++..+|..-+.|.++-...-+..+++.. ..|+.+...++.. +| +-|..-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhhc
Confidence 356899999999999999999999999999998777777765521 1345555555422 22 223332
Q ss_pred EecccccccCCHH-------------HHHHHHHHhccCCCEEEEEcCCC
Q 019684 180 VSAGSIEYWPDPQ-------------RGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 180 ~~~~~l~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
-+.-.+..++|+. ..+.+..-+|++||.++.++...
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 3333344455543 57889999999999999876543
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.78 E-value=0.00017 Score=64.53 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCEEEEEcCccc-HHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 111 NMLVVDVGGGTG-FTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 111 ~~~VLDiGcG~G-~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
+.+|+=||||.= ..++.+++.+ ++..|+++|+++++.+.+++... ..+++|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999964 4445555543 56789999999999999987543 3679999999977654446799999876
Q ss_pred cccc-cCCHHHHHHHHHHhccCCCEEEEE
Q 019684 184 SIEY-WPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 184 ~l~~-~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...- -.+..+++.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 5542 236679999999999999999886
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00012 Score=60.68 Aligned_cols=100 Identities=22% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCC--------CCCCCC
Q 019684 106 DLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDL--------PFPTDY 175 (337)
Q Consensus 106 ~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~--------~~~~~~ 175 (337)
.+..++.+|||+||-+|.|+....+.. |...|.|||+-.- ....+++++++ |+.+. ..++..
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 344689999999999999999888886 8899999998321 11245566665 66552 145678
Q ss_pred ccEEEecccccc----cCCHHH-------HHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIEY----WPDPQR-------GIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~----~~~~~~-------~l~~~~~~LkpgG~l~i~~~ 213 (337)
.|+|++...-.. +.|... ++.-....++|+|.++.-..
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 999998543221 122222 34444566789999987643
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.74 E-value=0.00014 Score=65.85 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCC-C-CCCCCccEEEe-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL-P-FPTDYADRYVS- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~-~-~~~~~fD~i~~- 181 (337)
.++.+|||.+++.|.-+..+++... ...+++.|+++.-+...+++ ....++.....|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4789999999999999999998875 58999999999988888765 3345677777777543 1 22335999998
Q ss_pred -----cccccccCCH----------------HHHHHHHHHhc----cCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHH
Q 019684 182 -----AGSIEYWPDP----------------QRGIREAYRVL----KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (337)
Q Consensus 182 -----~~~l~~~~~~----------------~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
..++..-++. .++|+++.+.+ ||||+++.++...... .+.+.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-------------ENE~v 230 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-------------ENEEV 230 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-------------GTHHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-------------HHHHH
Confidence 2233333331 26899999999 9999999887643221 13455
Q ss_pred HHHHHHhC-CCcEEE
Q 019684 237 YIEWFQKA-GFKDVQ 250 (337)
Q Consensus 237 ~~~~l~~a-GF~~v~ 250 (337)
+...|++. .|+.+.
T Consensus 231 V~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 231 VEKFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHHHSTSEEEEC
T ss_pred HHHHHHhCCCcEEEe
Confidence 66667765 555444
No 246
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.74 E-value=4.5e-05 Score=71.36 Aligned_cols=71 Identities=32% Similarity=0.436 Sum_probs=51.7
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~ 168 (337)
.+.+...+++.+... + ..|||+-||.|.++..+++. ..+|+|+|.++.+++.|++++.. .|++|+.+++++
T Consensus 182 ~~~l~~~~~~~l~~~-~-~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 182 NEKLYEQALEWLDLS-K-GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHCTT--T-TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHhhcC-C-CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 344555556655543 3 38999999999999999998 67999999999999999988543 568999887654
No 247
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.63 E-value=0.00017 Score=59.71 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=75.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.+.+.|+|+|+|.++...+.. .-+|++++.+|...+.|.+|.. ..|++++.+|+.+..| +..|+|+|-..=..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 377999999999998877666 6799999999999999999853 3579999999988877 34799987432111
Q ss_pred c--CCHHHHHHHHHHhccCCCEEEEE
Q 019684 188 W--PDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 188 ~--~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+ .....+++.+.+.|+-.+.++-.
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccH
Confidence 1 12236788888899999888643
No 248
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.62 E-value=0.00015 Score=61.62 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=66.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC----CCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL----PFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~----~~~~~~fD~i~~ 181 (337)
....|+|.-||-|..++.++.. +..|++||++|.-+..|+.|++ ..+++|+++|+.++ .+....+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4578999999999999999998 6789999999999999999864 25799999999653 344444666665
Q ss_pred cccccccCCHHHHHHHHHHhccCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGG 206 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG 206 (337)
.---..-.-....+-.+...++|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 4322211111233344445555543
No 249
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.00068 Score=60.69 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=92.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH-------hhC----------------CCCC--------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK-------QKE----------------PLKE-------- 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~-------~~~----------------~~~~-------- 158 (337)
..-+||--|||.|.++..++.. +..+-|-+.|--|+--.. ... ..++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3568999999999999999998 667777788766553221 100 0000
Q ss_pred ------------eEEEEcCCCCC---CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh
Q 019684 159 ------------CKIVEGDAEDL---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (337)
Q Consensus 159 ------------~~~~~~d~~~~---~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 223 (337)
.+.-.+|+.+. +-..+.||+|+..+.+..-.+.-..++.|...|||||..+-..|..-.+.-...
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 11122444321 112246999999987777777788999999999999998866553211100000
Q ss_pred hhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...-..--.+.+++..+.+.-||++++...+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 00000012478999999999999999887664
No 250
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.58 E-value=0.0012 Score=61.82 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCEEEEEcCcccHHHHHHHh--------h-------CCCCeEEEEeCCHHHHHHHHhhC----------------CCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVK--------H-------VDAKNVTILDQSPHQLAKAKQKE----------------PLKE 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~----------------~~~~ 158 (337)
+..+|+|+|||+|..+..+.. . .|..+|..-|+-..-....-+.+ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 356899999999977654422 1 24578888887532221111111 0011
Q ss_pred ---eEEEEcCCCCCCCCCCCccEEEecccccccCC--------------------------------------HHHHHHH
Q 019684 159 ---CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD--------------------------------------PQRGIRE 197 (337)
Q Consensus 159 ---~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~--------------------------------------~~~~l~~ 197 (337)
+.-+.+++..--|+.++.+++++.+++|++.. ...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11223455444478899999999999998752 1134555
Q ss_pred HHHhccCCCEEEEEcCCCCc-----------hh---Hhhhhhhhh----------------ccCCCHHHHHHHHHhCC-C
Q 019684 198 AYRVLKLGGKACIIGPVYPT-----------FW---LSRYFADVW----------------MLFPKEEEYIEWFQKAG-F 246 (337)
Q Consensus 198 ~~~~LkpgG~l~i~~~~~~~-----------~~---~~~~~~~~~----------------~~~~~~~~~~~~l~~aG-F 246 (337)
=.+-|.|||+++++...... .+ +...+.+.. ..+++.+++++.+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 56778999999987433210 00 111111111 13478999999999887 6
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++.+++.+.
T Consensus 303 ~I~~le~~~ 311 (386)
T PLN02668 303 AIDKLEVFK 311 (386)
T ss_pred EeeeeEEee
Confidence 665555544
No 251
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.58 E-value=0.00039 Score=56.20 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHh-----hCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEEcCCCCCCCCCCCcc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVK-----HVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD 177 (337)
.+..+|+|+|||.|.++..++. . ++.+|+++|.++..++.+.++... .++.+..++..+... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 3678999999999999999998 5 689999999999998888765321 345555555543221 34567
Q ss_pred EEEecccccccCCHH-HHHHHHHHhccCCCEEEE
Q 019684 178 RYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACI 210 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i 210 (337)
+++. +|-..+.. .+++.+.+ |+-..++
T Consensus 102 ~~vg---LHaCG~Ls~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 102 ILVG---LHACGDLSDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEE---eecccchHHHHHHHHHH---cCCCEEE
Confidence 7775 44444442 45555444 5554443
No 252
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.54 E-value=0.00017 Score=58.20 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=45.8
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCC
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAE 167 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~ 167 (337)
.|||||||.|.++..++...+..+++++|+++.+.+.++++... .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 48999999999999999988778999999999999999887432 34777776654
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.53 E-value=1.9e-05 Score=60.51 Aligned_cols=97 Identities=20% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEEcCcccHHHHHHHhhCCC---CeEEEEeCCHH---HHHHHHhhCCCCCeEEEEcCCCCC-C-CCCCCccEEEeccccc
Q 019684 115 VDVGGGTGFTTLGIVKHVDA---KNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDL-P-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~---~~~~a~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~i~~~~~l~ 186 (337)
||||+..|..+..+++..+. .+++++|..+. .-+..++.....+++++.++..+. + +..+++|+|+.-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 69999999999888876543 37999999984 444444322235699999998542 2 33568999997542 2
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+.....++.+.+.|+|||.+++-+
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 22334567888999999999998753
No 254
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.48 E-value=0.0025 Score=54.52 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=92.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.+.++.||||-.+.+...+.+..+...+++.|+++.-++.|.++... .+++...+|....--.+..+|+|+...+=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 56679999999999999999998889999999999999999887654 34677777774321233469999876544
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.. -...++++-.+.|+-=-++++... ....+++++|.+.+|.++...-+.+
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQPn------------------~~~~~LR~~L~~~~~~I~~E~ileE 146 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQPN------------------IHTYELREWLSANSYEIKAETILEE 146 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEECCC------------------CCHHHHHHHHHhCCceeeeeeeecc
Confidence 32 124577777776664345554422 1457899999999999887766653
No 255
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.44 E-value=0.00053 Score=62.32 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=67.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC----
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP---- 170 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~---- 170 (337)
+.+++++.+.. .++..++|.=+|.|..+..+++.++..+|+|+|.++.+++.+++++.. .++.++++++.++.
T Consensus 8 ll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 45555666554 377899999999999999999987779999999999999999987543 47889999886543
Q ss_pred -CCCCCccEEEec
Q 019684 171 -FPTDYADRYVSA 182 (337)
Q Consensus 171 -~~~~~fD~i~~~ 182 (337)
....++|.|+..
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 233568988873
No 256
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.0018 Score=58.06 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=64.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC---
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--- 170 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~--- 170 (337)
+..+.++.+... ++...+|.--|.|..+..+.+.+|. .+++|+|-++.+++.|+++... .++.++++++.++.
T Consensus 11 Ll~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 11 LLNEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHH
Confidence 555556666554 6789999999999999999999875 5699999999999999998643 56888888775542
Q ss_pred --CCCCCccEEEe
Q 019684 171 --FPTDYADRYVS 181 (337)
Q Consensus 171 --~~~~~fD~i~~ 181 (337)
...+++|.|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 22346777766
No 257
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00025 Score=67.54 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~ 168 (337)
+.+..+||+.||||.+++.+++. ..+|+|++++++.++.|+.++.. .|++|+++-+++
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 36789999999999999999987 67999999999999999998765 468999996655
No 258
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.30 E-value=0.00061 Score=58.09 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=66.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhh---C-CCCeEEEEeCCHHHHHHH-Hh-hCCCCCeEEEEcCCCCCC----C--C--CCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKA-KQ-KEPLKECKIVEGDAEDLP----F--P--TDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~~~~a-~~-~~~~~~~~~~~~d~~~~~----~--~--~~~ 175 (337)
+++.|+|+|.=.|..+..++.. + +..+|+|+|++....... .+ ....++++++++|..+.. . . ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5689999999999888777653 3 568999999964443222 22 122368999999986642 1 1 112
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhcc-CCCHHHHHHHHHhCC
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML-FPKEEEYIEWFQKAG 245 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aG 245 (337)
-.+ ++-.+-|...+..+.|+....++++|+++++.+...........-...|.. --....+.+.|++..
T Consensus 112 ~vl-VilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~ 181 (206)
T PF04989_consen 112 PVL-VILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHP 181 (206)
T ss_dssp SEE-EEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTT
T ss_pred ceE-EEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCC
Confidence 223 334444555667788899999999999999876542221111111111111 113566777887765
No 259
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0012 Score=60.01 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHh---hCCCCCeEEEEcCC----CCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQ---KEPLKECKIVEGDA----EDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~---~~~~~~~~~~~~d~----~~~~~~~~~fD~i~~ 181 (337)
..++|||+|.|.|.-+..+-..+|.. .++.++.|+..-+.... +...........|+ .++|..+ .|++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad-~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAAD-LYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccc-eeehhhh
Confidence 45779999999998887777777764 57778888866554442 22111122223333 3344333 4777776
Q ss_pred cccccccCCH---HHHHHHHHHhccCCCEEEEEcCCCCch
Q 019684 182 AGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVYPTF 218 (337)
Q Consensus 182 ~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~ 218 (337)
.+-|-+.... ...++.+...+.|||.|+|++...+..
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 6655555433 347899999999999999999876654
No 260
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.10 E-value=0.00044 Score=65.95 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=78.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC--CHHHHHHHHhhCCCCCeEEEEcCC-CCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ--SPHQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l~~ 187 (337)
-..|+|...|.|.++..|.+. ..-|.-+=+ .+..+...-++ ++-=+..|. +.++.-+.+||+|++.+++..
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydR----GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDR----GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhc----ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 357999999999999999876 333332222 12222222221 222233455 556666789999999999988
Q ss_pred cCCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 WPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..+. ..++-|+.|+|+|||.++|-+... ..++++.+++.-.++....
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------HHHHHHHHHHhCcceEEEE
Confidence 7654 679999999999999999976531 2456667777777764433
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.08 E-value=0.0065 Score=55.95 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+++++|+=+|+| .|.++..+++.. +++|+++|.|++-.+.|++..... ++.. |......-.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~---~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADH---VINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcE---EEEcCCchhhHHhHhhCcEEEECCC--
Confidence 489999999887 567888888875 599999999999999999875422 2222 22111111223999986543
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
...+....+.|++||+++++...
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45778899999999999998655
No 262
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.02 E-value=0.0047 Score=57.37 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----------------CCCeEEEEeCCHHHHHHH-H---hh----CCCCC--eEEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----------------DAKNVTILDQSPHQLAKA-K---QK----EPLKE--CKIVE 163 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----------------~~~~v~gvD~s~~~~~~a-~---~~----~~~~~--~~~~~ 163 (337)
..-+|+|+||.+|..+..+.... |..+|+--|+-..-.... + .. ....+ +.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 55789999999999887654321 236888888743221111 1 00 00123 33456
Q ss_pred cCCCCCCCCCCCccEEEecccccccCCH---------------------------------------HHHHHHHHHhccC
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEYWPDP---------------------------------------QRGIREAYRVLKL 204 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~~~~~---------------------------------------~~~l~~~~~~Lkp 204 (337)
+.+..--+++++.|++++.+++|++... ..+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 7776655889999999999999987430 1356666677899
Q ss_pred CCEEEEEcCCCCc--------hh----Hhhhhhhh----------------hccCCCHHHHHHHHHhCC-CcEEEEEEcC
Q 019684 205 GGKACIIGPVYPT--------FW----LSRYFADV----------------WMLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (337)
Q Consensus 205 gG~l~i~~~~~~~--------~~----~~~~~~~~----------------~~~~~~~~~~~~~l~~aG-F~~v~~~~~~ 255 (337)
||++++.-...+. .. +...+.++ ...+++.+++.+.+++.| |++.+++.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 9999987432221 01 11111111 113478999999998876 6665555544
No 263
>PRK10742 putative methyltransferase; Provisional
Probab=96.93 E-value=0.0025 Score=55.96 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=58.2
Q ss_pred CCC--EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------------CCeEEEEcCCCC-CCCCCC
Q 019684 110 RNM--LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KECKIVEGDAED-LPFPTD 174 (337)
Q Consensus 110 ~~~--~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~~~~d~~~-~~~~~~ 174 (337)
++. +|||.-+|+|..+..++.. +++|+++|-++.+....++++.. .+++++.+|..+ +.-...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 444 8999999999999999998 88899999999887766644221 357788888744 222223
Q ss_pred CccEEEeccccccc
Q 019684 175 YADRYVSAGSIEYW 188 (337)
Q Consensus 175 ~fD~i~~~~~l~~~ 188 (337)
+||+|++-=.+.|-
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 69999988777764
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.91 E-value=0.0036 Score=54.84 Aligned_cols=147 Identities=12% Similarity=0.017 Sum_probs=83.7
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--CCCCeEEEEcCCCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECKIVEGDAEDLP 170 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~ 170 (337)
+.+.+...++... ++..+|+|||||.=-++.......++..++|+|++..+++...+.. ...+.++...|+..-+
T Consensus 91 ~Ld~fY~~if~~~---~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 91 NLDEFYDEIFGRI---PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp GHHHHHHHHCCCS------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred hHHHHHHHHHhcC---CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 3444555555543 3578999999999999888777767899999999999998887653 2256778888886543
Q ss_pred CCCCCccEEEecccccccCCHHH-HHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQR-GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~-~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+....|+.+..-+++.+...+. .--++.+.+. .=.++++.+...-..-...+... -...+..++...|+.+.
T Consensus 168 -~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~-----y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQT-----YSAWFEALAAERGWIVD 240 (251)
T ss_dssp -TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHC-----HHHHHHHHCCTTCEEEE
T ss_pred -CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccC-----HHHHHHHhcccCCceee
Confidence 3456999999888876643321 2122233332 23455555433211111111111 13556677777787733
No 265
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.86 E-value=0.0044 Score=49.55 Aligned_cols=109 Identities=18% Similarity=0.296 Sum_probs=68.9
Q ss_pred eEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEecccccccCC--------HH---HHHHHH
Q 019684 136 NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWPD--------PQ---RGIREA 198 (337)
Q Consensus 136 ~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~~~~--------~~---~~l~~~ 198 (337)
+|+|+|+-+++++.+++++.. .+++++..+-+.+. .+.+++|+++.+ |.++|. ++ ..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999999999987543 46899988776654 233479998865 344442 22 688999
Q ss_pred HHhccCCCEEEEEcCC-CCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 199 YRVLKLGGKACIIGPV-YPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 199 ~~~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+.|+|||.+.++-.. ++....... ...++.+-|...-|.+.....++
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~---------av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESE---------AVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHH---------HHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHH---------HHHHHHHhCCcceEEEEEEEccC
Confidence 9999999999887543 332211111 12344555566788888887776
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.63 E-value=0.027 Score=55.04 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-----------CC-------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----------LP------- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-----------~~------- 170 (337)
++.+|+=+|||. |..+...++.. |++|+++|.+++.++.+++.. .++...|..+ +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG----A~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG----AEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC----CeEEEeccccccccccchhhhcchhHHHHH
Confidence 689999999996 77777778776 569999999999999998742 2332222111 00
Q ss_pred ---CCC--CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 171 ---FPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 171 ---~~~--~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+.+ +.+|+|+.......-+.+..+.+++.+.+||||.++....
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999877665444555556999999999999987754
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.63 E-value=0.0038 Score=56.46 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCEEEEEcCcccHH-HHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCC-----CCCCCCCCccEE
Q 019684 111 NMLVVDVGGGTGFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAE-----DLPFPTDYADRY 179 (337)
Q Consensus 111 ~~~VLDiGcG~G~~-~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~-----~~~~~~~~fD~i 179 (337)
.-++||||||.... .+.-++.+ +++++|+|+++..++.|+++... .+|+++...-. .+...++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 46899999998644 34334443 89999999999999999987543 35776544221 122234579999
Q ss_pred EecccccccCCHHHHHHHHHHh---c-cC-----CCEEEEEcCCCCc-------hhHhhhhhhhhc-------------c
Q 019684 180 VSAGSIEYWPDPQRGIREAYRV---L-KL-----GGKACIIGPVYPT-------FWLSRYFADVWM-------------L 230 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~---L-kp-----gG~l~i~~~~~~~-------~~~~~~~~~~~~-------------~ 230 (337)
+|+--++.-.+. ......+. | ++ .....+.....+. ..+.++..+... .
T Consensus 182 mCNPPFy~s~~e--~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgK 259 (299)
T PF05971_consen 182 MCNPPFYSSQEE--AEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGK 259 (299)
T ss_dssp EE-----SS----------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESS
T ss_pred ecCCccccChhh--hcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccC
Confidence 997766544332 11111111 2 11 1222233222211 112222222211 1
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 231 FPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 231 ~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+...+.+.|++.|-..+.+.++.
T Consensus 260 kssL~~l~~~L~~~~~~~~~~~e~~ 284 (299)
T PF05971_consen 260 KSSLKPLKKELKKLGATNYKVTEMC 284 (299)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEE
T ss_pred cccHHHHHHHHHhcCCceEEEEEcc
Confidence 2467899999999999888777764
No 268
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.59 E-value=0.0065 Score=56.71 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC---CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP---FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~---~~~~~fD~i~~ 181 (337)
+++.||||..+-.|.=+.+++.... ...|++.|.+..-+....+++.. .|......|..++| ++. +||-|++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 6899999999999988888777643 46899999999988888877543 45666777776554 444 7999987
Q ss_pred c----c--ccc------ccCC----------HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 182 A----G--SIE------YWPD----------PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 182 ~----~--~l~------~~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
- . ++. ...+ ..++|..+...+++||+|+.++...
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 2 1 111 1111 1268889999999999999887654
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.55 E-value=0.005 Score=56.04 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=59.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-----
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP----- 170 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~----- 170 (337)
..++++.+.. .++..++|.=-|.|..+..+.+.+|+++++|+|-++.+++.+++++. ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 9 LKEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 3444444443 37789999999999999999999888999999999999999998865 367999999886643
Q ss_pred C-CCCCccEEEe
Q 019684 171 F-PTDYADRYVS 181 (337)
Q Consensus 171 ~-~~~~fD~i~~ 181 (337)
. ...++|.|+.
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2 3346888887
No 270
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.42 E-value=0.061 Score=46.95 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCC-CCC-CCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAED-LPF-PTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~-~~~-~~~~fD~i~~~~~l 185 (337)
.|++||-+|=.. ..++.++-..+..+|+.+|+++..++..++.+.. -+++.+..|+.+ +|- -.++||++++.-..
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 589999999554 3344444444568999999999999888765433 238888999955 442 23679999973211
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
-.....-++.+....||..|...+............ ..++++.+.+.||.+.++..
T Consensus 123 -T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~-----------~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 123 -TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDK-----------WLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp -SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHH-----------HHHHHHHHHTS--EEEEEEE
T ss_pred -CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHH-----------HHHHHHHHHHCCcCHHHHHh
Confidence 122334689999999997774333322222111111 13567788899999877744
No 271
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.42 E-value=0.081 Score=43.92 Aligned_cols=134 Identities=19% Similarity=0.098 Sum_probs=87.0
Q ss_pred EEcCcccHHHHHHHhhCC-CCeEEEE--eCCHHHHHHHH---hh---CCCCCeEE-EEcCCCCCC----CCCCCccEEEe
Q 019684 116 DVGGGTGFTTLGIVKHVD-AKNVTIL--DQSPHQLAKAK---QK---EPLKECKI-VEGDAEDLP----FPTDYADRYVS 181 (337)
Q Consensus 116 DiGcG~G~~~~~l~~~~~-~~~v~gv--D~s~~~~~~a~---~~---~~~~~~~~-~~~d~~~~~----~~~~~fD~i~~ 181 (337)
=||=|.=.++..|++.++ ..+++++ |...+..+... ++ +...++.+ ...|+.++. ...+.||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788888888876 5666665 44443333332 11 22234433 445776654 24578999997
Q ss_pred cccccc--cCC-----------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 182 AGSIEY--WPD-----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 182 ~~~l~~--~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
++--.- ..+ ...+++.+.++|+++|.+.++-..... ++.-.+.++.+++||..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------y~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------YDSWNIEELAAEAGLVL 147 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------CccccHHHHHHhcCCEE
Confidence 643322 001 126899999999999999987544332 24456778999999999
Q ss_pred EEEEEcCcccccccc
Q 019684 249 VQLKRIGPKWYRGVR 263 (337)
Q Consensus 249 v~~~~~~~~~~~~~~ 263 (337)
++...+...-|+++.
T Consensus 148 ~~~~~F~~~~ypgY~ 162 (166)
T PF10354_consen 148 VRKVPFDPSDYPGYE 162 (166)
T ss_pred EEEecCCHHHCCCcc
Confidence 999998876666543
No 272
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.36 E-value=0.002 Score=48.90 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=43.1
Q ss_pred CccEEEeccccccc----CC--HHHHHHHHHHhccCCCEEEEEcCCCCchhH-----hhhhhhhhccCCCHHHHHHHHHh
Q 019684 175 YADRYVSAGSIEYW----PD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 175 ~fD~i~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
.||+|+|..+.-++ .| ...+++.+++.|+|||.+++.-.....+.. ..........-..++.+.+.|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999998877654 12 247999999999999999987432111110 11111111112356678888887
Q ss_pred --CCCcEEEEEEcC
Q 019684 244 --AGFKDVQLKRIG 255 (337)
Q Consensus 244 --aGF~~v~~~~~~ 255 (337)
.||..++.....
T Consensus 81 ~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 81 PEVGFSSVEELGVP 94 (110)
T ss_dssp TTT---EEEEE---
T ss_pred cccceEEEEEcccC
Confidence 599988765544
No 273
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.34 E-value=0.022 Score=53.09 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++++||=.||| .|..+..+++..+..+|+++|.+++.++.+++.....-+.....++.+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 67899999987 4677777777753347999999999999998753211011111122221111234888874322
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ...+..+.+.|++||++++...
T Consensus 245 -~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2467788999999999998764
No 274
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.33 E-value=0.013 Score=51.55 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=69.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---------CCeEEEEcCCCC---CCCCCCC-c
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIVEGDAED---LPFPTDY-A 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~---~~~~~~~-f 176 (337)
...+|||+|+|+|..++.++.. .+.+|+-.|+.. .++..+.+... ..+.....+-.. ..+.... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4568999999999777766665 478999999844 33333322111 123333333222 1122233 9
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|+|++..++.+......+..-+...|..+|.+++..+..
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 999999999998888889999999999999776665543
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.28 E-value=0.028 Score=52.63 Aligned_cols=100 Identities=25% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CC-CCC-CCCC-CCccEEEeccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-EDL-PFPT-DYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~-~~~-~~~~-~~fD~i~~~~~ 184 (337)
++.+|+=+|||+ |.++..+++..+..+|+.+|.++.-++.|++......+..... +. ... .... ..+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445999999996 8888888888878999999999999999998543221111111 11 000 1112 25999986544
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
....+.++.+.++|||.+.+.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3358899999999999999886543
No 276
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.26 E-value=0.036 Score=47.35 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC-------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL------------------------------- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~------------------------------- 156 (337)
.+-++-|.+||.|.++..+.-.++. ..|+|.|+++++++.|++|+.-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4568999999999998887766543 5799999999999999875310
Q ss_pred --------------CCeEEEEcCCCCCC-----CCCCCccEEEecccccccCCH---------HHHHHHHHHhccCCCEE
Q 019684 157 --------------KECKIVEGDAEDLP-----FPTDYADRYVSAGSIEYWPDP---------QRGIREAYRVLKLGGKA 208 (337)
Q Consensus 157 --------------~~~~~~~~d~~~~~-----~~~~~fD~i~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~l 208 (337)
......+.|+.+.. ......|+|+..--..+..++ ..+|+.++.+|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 11456778886621 122336999985444444443 36999999999656666
Q ss_pred EEEc
Q 019684 209 CIIG 212 (337)
Q Consensus 209 ~i~~ 212 (337)
.+++
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6644
No 277
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.24 E-value=0.025 Score=53.67 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-----C-CC-CCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----L-PF-PTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-----~-~~-~~~~fD~i~ 180 (337)
.++.+||.+|||. |..+..+++..+..+++++|.+++..+.+++... ..++...-.+ + .+ ....+|+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---AETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---cEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 4788999999998 8899999988744469999999999999987632 1222111110 1 11 223589888
Q ss_pred ecccc---------------cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSI---------------EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...- +-..+....+.++.+.|+|+|.+++...
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 74321 1124456688999999999999988753
No 278
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.22 E-value=0.032 Score=56.85 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=79.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-------C-----CCeEEEEeCCH---HHHHHHHhhC--------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQSP---HQLAKAKQKE-------------------- 154 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~s~---~~~~~a~~~~-------------------- 154 (337)
+.-+|||+|-|+|.......+.. | ..+++++|..| +.+..+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999776655433 2 36899999643 3333332110
Q ss_pred ------CCC--CeEEEEcCCCC-CCCCCCCccEEEecccc-cccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 155 ------PLK--ECKIVEGDAED-LPFPTDYADRYVSAGSI-EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 155 ------~~~--~~~~~~~d~~~-~~~~~~~fD~i~~~~~l-~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
... .+++..+|+.+ ++--...||+++.-..- ..-++. ..+++++.++++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~----------- 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF----------- 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe-----------
Confidence 001 24466688743 33223569999974322 122222 47999999999999998632
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.....++..|.++||++.....++
T Consensus 206 ---------t~a~~vr~~l~~~GF~v~~~~~~g 229 (662)
T PRK01747 206 ---------TSAGFVRRGLQEAGFTVRKVKGFG 229 (662)
T ss_pred ---------ehHHHHHHHHHHcCCeeeecCCCc
Confidence 245668889999999877654443
No 279
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.12 Score=47.77 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC----CCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCC---------CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP---------FP 172 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~---------~~ 172 (337)
+++.+|||.+.-.|.-+..+.+..- ...|++-|.++.-+...... ....++.+...|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 5899999999999998887777632 23799999998766655543 33345555555554333 12
Q ss_pred CCCccEEEec------ccccccCCH-----------------HHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 173 TDYADRYVSA------GSIEYWPDP-----------------QRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 173 ~~~fD~i~~~------~~l~~~~~~-----------------~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
...||-|++- .++.+-++. -+++.+..++||+||.++-++.....
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 3469998871 122222211 16899999999999999999876554
No 280
>PHA01634 hypothetical protein
Probab=96.11 E-value=0.033 Score=43.47 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
.+++|+|||.+-|..++.++-. +...|+++++++...+..+++....++-=......+++-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 6899999999999999999887 4568999999999999998876543321111111234434456888775
No 281
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.97 E-value=0.051 Score=49.32 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--CCCC------CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--AEDL------PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~~~~------~~~~~~fD~i 179 (337)
+.+.+||-+|+|+ |..+...++.++..+|+.+|+++..++.|++... ..+...... ..++ -..+..+|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga-~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGA-TVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCC-eEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 4899999999996 7777888888888999999999999999998432 222211111 1110 1233458888
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+....+ +..++.....+++||.+++.....+
T Consensus 247 ~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 865444 3567778899999999888765443
No 282
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.95 E-value=0.007 Score=49.18 Aligned_cols=131 Identities=18% Similarity=0.065 Sum_probs=78.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHH-HHhhCCCCCe-EEEEcCCC-CCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-KIVEGDAE-DLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~-~~~~~d~~-~~~~~~~~fD~i~~~~~l~~ 187 (337)
+++++-+|+.. -|...++-.++..++..+|.++--++. .+ .++ ++...|+. ++....++||.+.|.++++|
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~-----dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh 75 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFR-----DRLSSILPVDFAKNWQKYAGSFDFAASFSSIEH 75 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccc-----cccccccHHHHHHHHHHhhccchhhheechhcc
Confidence 56788888874 455555555566778888875421111 11 111 12222331 11123467999999999998
Q ss_pred cC-----CH------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WP-----DP------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~-----~~------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.. || .+.+.++.++|||||.+++.-|...+.... +. ++.+....+.-++ .||+.++....
T Consensus 76 ~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~f----Na-hRiYg~~rL~mm~--~gfe~i~tfs~ 146 (177)
T PF03269_consen 76 FGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQF----NA-HRIYGPIRLAMMF--YGFEWIDTFSG 146 (177)
T ss_pred ccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEE----ec-ceeecHhHHHHHh--CCcEEEeeecc
Confidence 72 22 378899999999999999987765432111 11 1233444554444 48988877554
No 283
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.77 E-value=0.21 Score=44.77 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=87.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCCC--------CCCCCcc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP--------FPTDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~--------~~~~~fD 177 (337)
..|+.+|||-=.-...+... ++.+++=+|. |++++.-++.+. ..+..++..|+.+.+ +..+.--
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999986665554322 2467777787 555554444432 356788888885211 2122344
Q ss_pred EEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC-chh----Hhhhh-------hhhhccCCCHHHHHHHHHh
Q 019684 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP-TFW----LSRYF-------ADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~l~~ 243 (337)
++++-.++.+++.. .++++.+.+...||+.+++...... ... ..... ...+....+.+++.++|++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAE 240 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHH
Confidence 77788888888764 4799999999889999887533221 100 01100 0111223578999999999
Q ss_pred CCCcEEEE
Q 019684 244 AGFKDVQL 251 (337)
Q Consensus 244 aGF~~v~~ 251 (337)
.||+....
T Consensus 241 ~Gw~~~~~ 248 (260)
T TIGR00027 241 RGWRASEH 248 (260)
T ss_pred CCCeeecC
Confidence 99998766
No 284
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.69 E-value=0.39 Score=43.38 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=75.2
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC--CCCccEEEeccccccc-
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP--TDYADRYVSAGSIEYW- 188 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~--~~~fD~i~~~~~l~~~- 188 (337)
+|+|+-||.|.+...+.+. +.+ +.++|+++.+++..+.+.... .+.+|+.++... ...+|+++...--..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~---~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK---LIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC---CccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 6899999999998888776 455 677999999999999886422 566788665432 3469999984322211
Q ss_pred --------CCHH-HHHHHH---HHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 189 --------PDPQ-RGIREA---YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 189 --------~~~~-~~l~~~---~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
.|.. .++.++ .+.++|. +++.|....-.... .-...+.+.+.|++.||.+...
T Consensus 77 ~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~--------~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 77 IAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHD--------NGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccC--------chHHHHHHHHHHHhCCcEEEEE
Confidence 2222 233333 3334554 33333322211000 0113467888899999985333
No 285
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.59 Score=40.97 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=69.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC----CeEEEEeCCHHHHHHHHhhC--CCCC--eEEEEcCCCC----CCCCCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQKE--PLKE--CKIVEGDAED----LPFPTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~--~~~~--~~~~~~d~~~----~~~~~~~fD 177 (337)
.+...+|+|+|+..-+..+.+.+.. .+++.+|+|...++...+.. ..++ +.-+++|.+. +| ..++==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 4789999999999888777766533 78999999998886654432 2233 4456677632 23 122223
Q ss_pred EEEecccccccCC-H-HHHHHHHHHhccCCCEEEEE
Q 019684 178 RYVSAGSIEYWPD-P-QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 178 ~i~~~~~l~~~~~-~-~~~l~~~~~~LkpgG~l~i~ 211 (337)
.++....+..+.. . ..++.++...|.||-++++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3445566666642 2 47999999999999999885
No 286
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.62 E-value=0.056 Score=46.93 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=74.6
Q ss_pred hHHHHHHhc---cccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCH----HHHHHHHhhCCCCCeEEEEcC
Q 019684 94 TEDMRDDAL---EPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECKIVEGD 165 (337)
Q Consensus 94 ~~~~~~~~l---~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~~~d 165 (337)
...++..++ +.+.+ +++.+||-+|.++|.....+.+-. |..-|++++.|+ +.+..|+++ .|+..+..|
T Consensus 138 rSKLAA~I~gGvdnihi-kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiED 213 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHI-KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIED 213 (317)
T ss_pred HHHHHHHhhcCccceee-cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeecc
Confidence 444554443 33334 589999999999999988887765 567899999986 445555543 678888888
Q ss_pred CCCCC---CCCCCccEEEecccccccCCHH-HHHHHHHHhccCCCEEEEE
Q 019684 166 AEDLP---FPTDYADRYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 166 ~~~~~---~~~~~fD~i~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~ 211 (337)
+.... ..-.-.|+|++.-. .+|.. -+.-++...||+||.++++
T Consensus 214 ArhP~KYRmlVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCCchheeeeeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 86522 12234666665321 12322 3566788999999999886
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.59 E-value=0.023 Score=48.90 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----C-C----CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----D-A----KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~-~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~ 172 (337)
.-.+|+|+..-.|.|+..+.+++ + . ..+++||+-+- +.-+++.-+++|+.... |.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------APIEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------CccCceEEeecccCCHhHHHHHHHHhC
Confidence 45789999999999999988764 1 1 23999998432 22256788899997642 55
Q ss_pred CCCccEEEecc-----cccccCCHH------HHHHHHHHhccCCCEEEE
Q 019684 173 TDYADRYVSAG-----SIEYWPDPQ------RGIREAYRVLKLGGKACI 210 (337)
Q Consensus 173 ~~~fD~i~~~~-----~l~~~~~~~------~~l~~~~~~LkpgG~l~i 210 (337)
.++.|+|+|.. .+|.++... ..|.-...+|||||.++-
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 67899999953 344444331 456677789999999974
No 288
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.041 Score=50.77 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=76.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEEEcCCCCCCC-CCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPF-PTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~ 186 (337)
..+|||.=+|+|.=++.++.+.+..+++.-|+||.+.+.+++|...+ +...+..|+..+-. ....||+|= +.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 67899999999999999999877669999999999999999986544 44555567644321 135688875 33
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-+..|.-++..+.+.++.||.+.++.
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 44566779999999999999999973
No 289
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.48 E-value=0.033 Score=49.77 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=76.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCCC--CCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL--PFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~--~~~~~~fD~i~ 180 (337)
..++||-||.|.|...+....+-.-.++.-+|++...++..++-. ..+++....+|...+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 678999999999999988887733357888999998888887643 236688888886332 13367899999
Q ss_pred ecccccccCC----HHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.-..=.-.+. .+..+.-+.+.||+||+++....+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 6322111111 135788899999999999988644
No 290
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.31 E-value=0.12 Score=50.55 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC----CCeEEEEeCCHHHHHHHHhhCCCCCe----EEEEcCCCCCC-C----CCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLP-F----PTDY 175 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~d~~~~~-~----~~~~ 175 (337)
.+..+|.|..||+|.+.....+.+. ...++|.|+++.....|+.+..-.++ ....+|-..-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 3667999999999999887766542 26799999999999999987433332 33444442222 2 3367
Q ss_pred ccEEEeccccc---ccC---------------------C-HHHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIE---YWP---------------------D-PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~---~~~---------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
||.|+++--+. +.. . ....+.++...|+|||+..++-+
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 99999842221 110 0 13689999999999987776644
No 291
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.13 Score=41.30 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=73.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAED 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~ 168 (337)
-+.+..+.++..+.-. +..+.+|+|+|.|......++. .-...+|+++++-.+..++-+. ....+.|..-|+-.
T Consensus 56 AtteQv~nVLSll~~n-~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGN-PKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred ccHHHHHHHHHHccCC-CCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 3455556666666543 5578999999999999887777 2367899999999888877432 23457788888766
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
..+.+-.+-+|+ .+-.-++|. -.++..-+..|..++-.-+..+
T Consensus 134 ~dl~dy~~vviF--gaes~m~dL---e~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 134 VDLRDYRNVVIF--GAESVMPDL---EDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred ccccccceEEEe--ehHHHHhhh---HHHHHhhCcCCCeEEEEecCCC
Confidence 555554343343 332223443 3344445666777765544333
No 292
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.21 E-value=0.1 Score=50.98 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC--------------------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------------------- 168 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-------------------- 168 (337)
++.+||=+|+|. |..+..++... ++.|+++|.++..++.+++. +.+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----GAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccccceeecCHHHHHHH
Confidence 578999999996 56666667765 67899999999998888863 22333322211
Q ss_pred ---CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 169 ---LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 169 ---~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
++-.-..+|+|+..-.+..-+.|.-+.+++.+.+|||+.++-.
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 0111245999988776666566666889999999999997643
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=95.12 E-value=0.065 Score=48.66 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=49.7
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
|...-..+.+.++.... .+|+.|||.-||+|..+....+. +-+.+|+|++++..+.|++++.
T Consensus 190 Pt~kP~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 190 PTQKPEALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cccChHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 33444566666665543 48999999999999999987776 7899999999999999998853
No 294
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.03 E-value=0.053 Score=46.91 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 152 (337)
+......+.+.++.... .+++.|||.=||+|..+....+. +-+.+|+|+++...+.|++
T Consensus 173 ~~~kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 34455566666665543 57899999999999999987777 7899999999999998864
No 295
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.98 E-value=0.085 Score=46.97 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=50.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHhhCCC---------CCeEEEEcCCCCCCCCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---------KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~ 173 (337)
.-+|+|+|.|+|.++..+.+... ..+++.||+|+.+.+.-++++.. .++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 46999999999999999877542 36899999999998888877654 12444 33444433
Q ss_pred CCccEEEecccccccC
Q 019684 174 DYADRYVSAGSIEYWP 189 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~ 189 (337)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 356777887777776
No 296
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.98 E-value=0.064 Score=48.63 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--------------------CCCeEEEEeCCH--HHHHHHHhhCCC-----------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--------------------DAKNVTILDQSP--HQLAKAKQKEPL----------- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--------------------~~~~v~gvD~s~--~~~~~a~~~~~~----------- 156 (337)
+..+||-||.|.|.=...++..+ +..+++.||+.+ ..++........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987666655443 125899999975 444443322111
Q ss_pred ---------CCeEEEEcCCCCCCCCC-------CCccEEEeccccccc-----CCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 157 ---------KECKIVEGDAEDLPFPT-------DYADRYVSAGSIEYW-----PDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 157 ---------~~~~~~~~d~~~~~~~~-------~~fD~i~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
-++.|.+.|+..+..++ ...|+|...+.+..+ ..--++|.++...++||-.|+|++..
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 24789999997654322 246888776666533 22347999999999999999998753
No 297
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.97 E-value=0.028 Score=50.09 Aligned_cols=104 Identities=17% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-------C---CCCC---eEEEEcCCCCCCC-C
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------E---PLKE---CKIVEGDAEDLPF-P 172 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-------~---~~~~---~~~~~~d~~~~~~-~ 172 (337)
..-.+++|||+|||+|.-.+..... ....+...|.|...++...-. + ...+ ......+..++-+ .
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred eEecCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 3347899999999999988887766 237888889988777322210 0 0011 1111221112111 1
Q ss_pred CC--CccEEEecccccccCCHHHH-HHHHHHhccCCCEEEEE
Q 019684 173 TD--YADRYVSAGSIEYWPDPQRG-IREAYRVLKLGGKACII 211 (337)
Q Consensus 173 ~~--~fD~i~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~i~ 211 (337)
.+ +||+|.++..+...+..+.+ .......++++|.+++.
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 12 79999999888877766666 66667777888888764
No 298
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.83 E-value=0.085 Score=46.08 Aligned_cols=74 Identities=24% Similarity=0.250 Sum_probs=45.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh-------hCCC-----CCeEEEEcCCCC-CCCCCCCccE
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEPL-----KECKIVEGDAED-LPFPTDYADR 178 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~~-----~~~~~~~~d~~~-~~~~~~~fD~ 178 (337)
.+|||.=+|-|..+..++.. |++|+++|-||.+....+. .... .+++++.+|..+ +..++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999999876 7899999999876554442 1111 368999999865 5556789999
Q ss_pred EEecccccc
Q 019684 179 YVSAGSIEY 187 (337)
Q Consensus 179 i~~~~~l~~ 187 (337)
|+.--++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999877765
No 299
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.035 Score=53.01 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCCCC----eEEEEcCCCCC----CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDL----PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~d~~~~----~~~~~~fD~i 179 (337)
.++-+|||.=|++|.-++..+.+.|+ .+|++-|.++..++..+++...++ ++....|+..+ +.....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 36789999999999999999999887 579999999999999888765443 44455665322 3335679999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-+ .-...+..+|+.+.+.++.||.|.++..
T Consensus 188 DL----DPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DL----DPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ec----CCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 73 3444567899999999999999999743
No 300
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.73 E-value=0.12 Score=49.79 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=79.1
Q ss_pred HHHHHHhccccCCCCC--CCEEEEEcCcccHHHHHHHhh----CCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcC
Q 019684 95 EDMRDDALEPADLSNR--NMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGD 165 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~--~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d 165 (337)
+.+...+++..+-..+ ...|+-+|.|-|-+.....+. ....++++++-+|.++-..+..- -..+++.+..|
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence 3344444444332222 457889999999876654332 12478999999999887666432 23569999999
Q ss_pred CCCCCCCCCCccEEEecccccccCCH---HHHHHHHHHhccCCCEEEE
Q 019684 166 AEDLPFPTDYADRYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 166 ~~~~~~~~~~fD~i~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i 210 (337)
+.+++-+..+.|++++- .|..+.|- .+-|..+.+.|||+|..+=
T Consensus 430 MR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 430 MRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 99988556789999863 34444443 4789999999999987754
No 301
>PRK13699 putative methylase; Provisional
Probab=94.58 E-value=0.13 Score=45.15 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=48.7
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
+...-..+.+.++.... .+|+.|||.=||+|..+....+. +-+++|+|++++..+.+.++..
T Consensus 145 p~~kP~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 145 PTEKPVTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCcHHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 44455566666665433 47899999999999999987776 7899999999999999987653
No 302
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.53 E-value=0.11 Score=47.60 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh-------hCC----CC-CeEEEEcCCCCCCC-CCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEP----LK-ECKIVEGDAEDLPF-PTDY 175 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~----~~-~~~~~~~d~~~~~~-~~~~ 175 (337)
.+|+-|.|-=.|||.++...+.- |+-|+|.|++-.++...+. |.. .+ -+.++.+|....+. ....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 58999999999999999887776 8999999999888774322 111 11 15678888866553 3567
Q ss_pred ccEEEec------------------------ccccccCCH---------HHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSA------------------------GSIEYWPDP---------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~------------------------~~l~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
||.|+|. .--.|.+.. ...+.=..++|..||++++--+
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999991 111233321 1467777899999999988644
No 303
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.51 E-value=0.56 Score=43.06 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC------CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~------~~~~~~fD~i~~ 181 (337)
.++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++... +.+..+-... ....+.+|+++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGA----DEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCC----CEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 467899998886 478888888875 6789999999999988865322 2222111110 123456898874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... ....++++.+.|+++|.++....
T Consensus 239 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 321 13578889999999999987643
No 304
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.39 E-value=0.29 Score=45.67 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeC---CHHHHHHHHhhCCCCCeEEEE---cCCCCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQ---SPHQLAKAKQKEPLKECKIVE---GDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~~---~d~~~~~~~~~~fD~i~~~ 182 (337)
++.+||=+|+|. |.++..+++.. +.+|++++. ++.-.+.+++... +++. .|..+. ...+.+|+|+-.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga----~~v~~~~~~~~~~-~~~~~~d~vid~ 245 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA----TYVNSSKTPVAEV-KLVGEFDLIIEA 245 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC----EEecCCccchhhh-hhcCCCCEEEEC
Confidence 678999999874 77777777775 568999986 6778887775422 2221 111110 112358888854
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. . ...+.+..+.|++||++++...
T Consensus 246 ~g-----~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 TG-----V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence 32 1 2467888999999999988754
No 305
>PRK13699 putative methylase; Provisional
Probab=94.26 E-value=0.12 Score=45.19 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=47.5
Q ss_pred EEEEcCCCCC--CCCCCCccEEEecccc----cc-----c--C---C-HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 160 KIVEGDAEDL--PFPTDYADRYVSAGSI----EY-----W--P---D-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 160 ~~~~~d~~~~--~~~~~~fD~i~~~~~l----~~-----~--~---~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
+++.+|..+. .++++++|+|+..--. .. + . + ....+.+++|+|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 4566666443 3667778888774111 00 0 0 1 1368899999999999987642211
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
....+...++++||.......
T Consensus 76 ----------~~~~~~~al~~~GF~l~~~Ii 96 (227)
T PRK13699 76 ----------RVDRFMAAWKNAGFSVVGHLV 96 (227)
T ss_pred ----------cHHHHHHHHHHCCCEEeeEEE
Confidence 123456678999998766543
No 306
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.26 E-value=0.38 Score=44.74 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+++++||=+|||. |.++..+++. .++.+|+++|.+++-++.+++ +. ......+. . .+..+|+|+-.-.-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---~~~~~~~~---~-~~~g~d~viD~~G~- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---ETYLIDDI---P-EDLAVDHAFECVGG- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---ceeehhhh---h-hccCCcEEEECCCC-
Confidence 4689999999874 5566666664 456789999999988888875 21 11111111 1 11248888743221
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
......+.+..+.|++||++++...
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123578889999999999988753
No 307
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.25 E-value=0.12 Score=48.73 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC----C-CeEEEEcCCCCCC-CCCCCccEEEecc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL----K-ECKIVEGDAEDLP-FPTDYADRYVSAG 183 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~----~-~~~~~~~d~~~~~-~~~~~fD~i~~~~ 183 (337)
.-+|||.=+|+|.=++..+.+.++ .+|+.-|+|+++++..++|... . .+++...|+..+- .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence 468999999999999998888544 6899999999999999987432 2 4677788875432 2456799997
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+.-+..+..++..+.+.++.||.|.++..
T Consensus 127 -lDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 -LDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -E--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -eCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 44455677899999999999999999844
No 308
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.11 E-value=0.07 Score=41.98 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=50.5
Q ss_pred eEEEEcCCCC-CCCCCCCccEEEecccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCC
Q 019684 159 CKIVEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (337)
Q Consensus 159 ~~~~~~d~~~-~~~~~~~fD~i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (337)
+++..+|+.+ ++--+..||+|+... +.--.++ ..+++++.++++|||.+.-.. .
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------S 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------c
Confidence 5677888843 332236799999754 2222333 479999999999999886422 3
Q ss_pred HHHHHHHHHhCCCcEEEEEEcCc
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
...++..|.++||.+....-++.
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STT
T ss_pred hHHHHHHHHHcCCEEEEcCCCCC
Confidence 35688899999999888877653
No 309
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.09 E-value=0.2 Score=42.03 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~ 178 (337)
++..|+|+|.-.|..++.++... ...+|+++|++-..++.+... .+++.|+.++-.+.. ...+.--+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 56789999999998887776532 137999999987665444332 378999999886642 22333345
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
.++-..-|+....-..++-..++|.-|-++++.+...+.
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 556666676666667888888999999999998765543
No 310
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.09 E-value=0.26 Score=38.60 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=60.9
Q ss_pred cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEEecccccccCCHHH
Q 019684 120 GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVSAGSIEYWPDPQR 193 (337)
Q Consensus 120 G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~~~~~l~~~~~~~~ 193 (337)
|.|..+..+++..+ .+|+++|.++.-++.+++... ..++..+-.++ . ..+..+|+|+-.-. -..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc---cccccccccccccccccccccccceEEEEecC------cHH
Confidence 56888999999875 999999999999999987542 11222211111 1 22346999985322 246
Q ss_pred HHHHHHHhccCCCEEEEEcCCC
Q 019684 194 GIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 194 ~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.++.....|+|+|++++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
No 311
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.01 E-value=0.046 Score=41.37 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 142 (337)
+...-.|||||+|.+.--|..+ |..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4567889999999999888888 788889997
No 312
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.51 E-value=0.5 Score=43.24 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++++||=+||| .|.++..+++..+...++++|.++..++.+.+.. . .|..+. ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~--i~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------V--LDPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------c--cChhhc--cCCCCCEEEECCC----
Confidence 56789989987 4778888888764444778899888777665321 1 111110 1235898874322
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...+..+.+.|+++|++++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 23467888999999999998754
No 313
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.49 E-value=0.53 Score=43.40 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=60.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcC---CCCCCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGD---AEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d---~~~~~~~~~~fD~i~~~~~ 184 (337)
++.+||-.|||. |..+..+++.. +. ++++++.++...+.+++... . .++..+ ........+.+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGA-D--ETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-C--EEEcCCchhhhhhhccCCCccEEEECCC
Confidence 678999998876 77777777775 55 79999999988887665321 1 112111 1111112234899886432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ...++++.+.|+++|+++...
T Consensus 241 ~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 245788899999999998764
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.09 E-value=0.97 Score=41.78 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+++++||=.|+| .|..+..+++.. +.++++++.+++-.+.+++.... .+. |..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~----~vi-~~~~~--~~~~~d~~i~~~~~-- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAA----SAG-GAYDT--PPEPLDAAILFAPA-- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCc----eec-ccccc--CcccceEEEECCCc--
Confidence 478999999975 456666777775 67899999999999888875431 111 11111 12347876543221
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...+....+.|++||++++...
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999988764
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.05 E-value=0.71 Score=40.62 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~i~ 180 (337)
.++.+||..|+|+ |..+..+++.. +.++++++.++...+.+++... . .++ |..+.. ...+.+|+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~~~--~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGA-D--HVI--DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-c--eec--cCCcCCHHHHHHHhcCCCCCEEE
Confidence 4788999999985 77777777765 5899999999988888765421 1 111 111111 1235699998
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.... . ...+..+.+.|+++|.++....
T Consensus 207 ~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 5422 1 1467778899999999987654
No 316
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.67 E-value=0.51 Score=44.10 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~ 180 (337)
.++++||=.|||. |..+..+++.. +. +|+++|.++...+.+++... . .++...-.+. . .....+|+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGA-T--HTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-c--eEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 4789999999864 66777777775 55 59999999999999876432 1 1111110110 0 1223589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-.. .. ...++...+.+++||++++...
T Consensus 251 d~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 432 12 2467778899999999998754
No 317
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.66 E-value=0.38 Score=43.61 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=73.2
Q ss_pred CCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 111 ~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
+.+|.-||.|. |..+..++--. +++|+.+|+|..-+........ .++.....+...+...-.+.|+++..-.+.--.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 45677888884 77777666654 7899999999988887776543 345555555443332335699999887777778
Q ss_pred CHHHHHHHHHHhccCCCEEEE
Q 019684 190 DPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i 210 (337)
.|.-+.+++...+|||+.++=
T Consensus 246 aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CceehhHHHHHhcCCCcEEEE
Confidence 888999999999999999864
No 318
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.54 E-value=0.24 Score=46.80 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC-CCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP-TDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~ 186 (337)
..|||||+|||.++...++. ++-.|++++.-..|.+.|++.... ++++++.---.++... ....|+++.-...-
T Consensus 68 v~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 46999999999999887777 355799999999999999865432 4466655433333211 22356555422221
Q ss_pred cc--CCHHHHHHHHHHhcc
Q 019684 187 YW--PDPQRGIREAYRVLK 203 (337)
Q Consensus 187 ~~--~~~~~~l~~~~~~Lk 203 (337)
.+ ...-..++++++.|.
T Consensus 147 EligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhccccchhHHHHHHHhc
Confidence 11 111235666666554
No 319
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.42 E-value=0.48 Score=44.54 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCCC-CCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLP-FPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~i~~~~~ 184 (337)
+++++||=.|+|. |..+..+++.. +. +|+++|.++..++.+++.....-+.....|. +.+. ...+.+|+|+-...
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 3788999899863 66777777775 55 6999999999999887643211011111111 0000 11225888874321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
....+....+.|+++|++++...
T Consensus 269 ------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 ------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467788899999999988754
No 320
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=92.32 E-value=1.2 Score=42.20 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=60.3
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhC---CCCeEEEEeC----CHHHHHHHHhhCC----CCC--eEEEE---cCCCCC
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKHV---DAKNVTILDQ----SPHQLAKAKQKEP----LKE--CKIVE---GDAEDL 169 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~~---~~~~v~gvD~----s~~~~~~a~~~~~----~~~--~~~~~---~d~~~~ 169 (337)
+.-+|+|+|.|.|. +...|+.+. |..++|||+. +...++.+.+++. .-+ .+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 45689999999985 333444432 4589999999 7777766665532 123 33433 233333
Q ss_pred -----CCCCCCccEEEecccccccCC-------HHHHHHHHHHhccCCCEEEEE
Q 019684 170 -----PFPTDYADRYVSAGSIEYWPD-------PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 170 -----~~~~~~fD~i~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++..=+|.+...+||+.+ +...+-+..+.|+|.-.+++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 123343445556777788853 223344556688998666554
No 321
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=0.69 Score=44.17 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=67.5
Q ss_pred CCCEEEEEcCccc--HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcC--C--CCCCCC-CCCccEEE
Q 019684 110 RNMLVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGD--A--EDLPFP-TDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G--~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d--~--~~~~~~-~~~fD~i~ 180 (337)
..+.+.|+|.|.| .++......--.-.++.||.|..|......+... .+-..+... + ..+|.. ...||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4567888888765 4444444432235788999999999988876543 111111111 1 123433 34599999
Q ss_pred ecccccccCCHH---HH-HHHHHHhccCCCEEEEEcCCCC
Q 019684 181 SAGSIEYWPDPQ---RG-IREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 181 ~~~~l~~~~~~~---~~-l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+.+.++++.+.. .+ -....+..++|+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999997753 23 3344566788999999876543
No 322
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=0.32 Score=45.01 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=37.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----C----CCeEEEEeCCHHHHHHHHhhCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----D----AKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~----~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
..-.++|+|.|+|.++..+.+.. | ..++..|++|++..+.=++++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 45689999999999999887643 3 5899999999998877766543
No 323
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.96 E-value=2.8 Score=31.94 Aligned_cols=102 Identities=22% Similarity=0.223 Sum_probs=62.9
Q ss_pred CcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccccccCCHH
Q 019684 119 GGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ 192 (337)
Q Consensus 119 cG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l~~~~~~~ 192 (337)
||.|..+..+++.+ .+.+|+.+|.+++..+.+++. ...++.+|..+.. ..-.+.|.+++.. ++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----GVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----ccccccccchhhhHHhhcCccccCEEEEcc-----CCHH
Confidence 45556666655543 345899999999999988864 4679999997642 2224577777542 2333
Q ss_pred --HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 193 --RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 193 --~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
..+....+.+.|...++..... .+..+.|+++|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~~--------------------~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVND--------------------PENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEESS--------------------HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC--------------------HHHHHHHHHCCcCEE
Confidence 3444556667788887765322 334567777776543
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.92 E-value=0.61 Score=41.97 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC-C-CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-P-FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~-~-~~~~~fD~i~~~~~ 184 (337)
++.+||=+|+| .|..+..+++.. +. +|+++|.++.-++.+++.....-+.. .+. ... . .....+|+++-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~--~~~~~~~~~~~~~~g~d~vid~~G 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEP--EVLAERQGGLQNGRGVDVALEFSG 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCc--hhhHHHHHHHhCCCCCCEEEECCC
Confidence 68899999886 366667777775 55 49999999998888886532110100 110 000 0 11235888874321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
....++++.+.|+|+|++++...
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13467888999999999998764
No 325
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.82 E-value=1.9 Score=39.93 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=80.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~l~ 186 (337)
..+++|+-||.|.+..-+... +.+ +.++|+++..++.-+.+... ..++..|+.+.. +....+|+++...--.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~--~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH--GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC--CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 367999999999999888877 555 55799999999988887653 455666765433 1111689999843332
Q ss_pred cc---------CCHH----HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCc
Q 019684 187 YW---------PDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 187 ~~---------~~~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
.+ .|+. --+.++...++| .+++.+....-.. . .-...+.+.+.|++.||.
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~--~-------~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLS--S-------KGQTFDEIKKELEELGYG 141 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHh--c-------CchHHHHHHHHHHHcCCc
Confidence 22 2332 345666677788 5555554322111 0 223568899999999997
No 326
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.62 E-value=2.2 Score=39.01 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=90.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC------CeEEEEcCCCCC--C--CC-----CCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIVEGDAEDL--P--FP-----TDY 175 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~d~~~~--~--~~-----~~~ 175 (337)
...|+-+|||--.-+..+-.. ++.+|.-+|. |+.++.=++.+... ..+++..|+.+. + +. ...
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 478999999964443332222 2578888888 77776655554332 478899999632 1 22 233
Q ss_pred ccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhh-------hh-------hhhhccCCCHHHHHH
Q 019684 176 ADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSR-------YF-------ADVWMLFPKEEEYIE 239 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~ 239 (337)
-=++++-.++.+++.. .++++.|..++.||-.+++............ .. ...+....+..++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 3478888889998765 4799999999999999887654222111110 00 112222356899999
Q ss_pred HHHhCCCcEEEEE
Q 019684 240 WFQKAGFKDVQLK 252 (337)
Q Consensus 240 ~l~~aGF~~v~~~ 252 (337)
++.+.||..+...
T Consensus 251 ~l~~~g~~~~~~~ 263 (297)
T COG3315 251 WLAERGWRSTLNR 263 (297)
T ss_pred HHHhcCEEEEecC
Confidence 9999999977764
No 327
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.24 E-value=0.89 Score=41.99 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-C-CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-P-FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~i~~~~~l 185 (337)
++.+||=.|+| .|..+..+++.. +.+ |+++|.+++..+.+++.....-+.....+...+ . .....+|+|+-...
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 68899999886 356666677775 566 999999999988887643211011100110001 0 12235898884321
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
....+....+.|+++|++++...
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -----NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEEcC
Confidence 22456777889999999987654
No 328
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.11 E-value=1.3 Score=41.14 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC----C-C-CCCCcc----
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----P-F-PTDYAD---- 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~----~-~-~~~~fD---- 177 (337)
.++.+||-.|+|. |..+..+++.. +.+++++|.+++.++.+++.....-+.....+..++ . . ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 4789999999975 77777778775 568999999999999887643211011111110010 0 0 112344
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|+ ..... ...+....+.|++||++++....
T Consensus 244 ~v~-----d~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 244 KIF-----ECSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EEE-----ECCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 443 22222 34667788899999999987643
No 329
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.04 E-value=1.1 Score=41.66 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC---C--CCCCCCcc-EEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED---L--PFPTDYAD-RYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~---~--~~~~~~fD-~i~ 180 (337)
.++++||=.|+|. |..+..+++.. +.+ |+++|.+++..+.+++... . .++..+-.. + ......+| +|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGA-M--QTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCC-c--eEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 3688999999864 66667777775 554 7899999998888865322 1 111111000 0 01223477 544
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
- .... ...+.+..+.|++||++++...
T Consensus 235 d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 E-----TAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred E-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2222 3577888999999999998754
No 330
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.01 E-value=0.14 Score=45.93 Aligned_cols=93 Identities=28% Similarity=0.409 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCcccHHHH-HHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe----EEEEcCCCCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTL-GIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
..+..|.|+=.|-|+++. .+... +...|+++|.+|..++..++++..+++ ..+.+|-.. +-++...|-|.+.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLG- 269 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLG- 269 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeec-
Confidence 356889999999999998 44444 567899999999999999988765553 334455433 3445667877743
Q ss_pred cccccCCHHHHHHHHHHhccCCCE
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGK 207 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~ 207 (337)
-+|.-++-.-.+..+|||.|-
T Consensus 270 ---LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 ---LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ---cccccccchHHHHHHhhhcCC
Confidence 455555555667788888543
No 331
>PLN02740 Alcohol dehydrogenase-like
Probab=90.69 E-value=1.3 Score=41.77 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC-----CCC-C-CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-----AED-L-PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d-----~~~-~-~~~~~~fD~i~ 180 (337)
+++++||=+|+|. |..+..+++..+..+|+++|.+++.++.+++... . .++..+ ..+ + ....+.+|+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-T--DFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4789999999873 6666777777533379999999999999976432 1 122111 100 0 01122589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-... . ...+......+++| |++++...
T Consensus 274 d~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 5322 2 24677788889997 99887654
No 332
>PLN02827 Alcohol dehydrogenase-like
Probab=90.65 E-value=0.91 Score=42.91 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-----CCCC-CC-CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-----DAED-LP-FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-----d~~~-~~-~~~~~fD~i~ 180 (337)
.++.+||-.|+|. |..+..+++..+...++++|.++...+.+++... . .++.. +..+ +. ...+.+|+|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-~--~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-T--DFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--EEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4789999998863 6666777777543468999999999888876432 1 11111 1100 00 1122588887
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-... ....+....+.+++| |++++...
T Consensus 269 d~~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECVG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECCC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 4322 123567788899998 99987653
No 333
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.40 E-value=0.59 Score=43.45 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 152 (337)
+-+.|+|+|.|.|.++..+.-.+ +..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 45789999999999999998876 7899999999777666653
No 334
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.23 E-value=2.7 Score=37.36 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+||-.|||. |..+..+++.. +.+ +++++.+++..+.+++......+ .. ..........+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~--~~--~~~~~~~~~~~d~vl~~~~-- 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPV--AA--DTADEIGGRGADVVIEASG-- 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccc--cc--cchhhhcCCCCCEEEEccC--
Confidence 3788999899875 77777777775 566 99999999988877764311111 10 0000112345898885321
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
....+....+.|+++|.++...
T Consensus 169 ----~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ----SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ----ChHHHHHHHHHhcCCcEEEEEe
Confidence 1236778899999999998764
No 335
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.19 E-value=0.86 Score=39.59 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-C----eEEEEc-CC----CCCCCCCCCccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-E----CKIVEG-DA----EDLPFPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~----~~~~~~-d~----~~~~~~~~~fD~ 178 (337)
.+.-++||||.|.--.=-.+..+--+.+.+|.|+++..++.|+.....+ + ++.... |- ..+.-.++.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 3567899999987433222222212789999999999999999764322 2 343322 21 112223567999
Q ss_pred EEeccccccc
Q 019684 179 YVSAGSIEYW 188 (337)
Q Consensus 179 i~~~~~l~~~ 188 (337)
+.|+--+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9998777643
No 336
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.83 E-value=2.8 Score=38.39 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-CCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l~ 186 (337)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++... . .++..+-.... ...+.+|+++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGA-D--EVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCC-c--EEeccCCcchHHhccCCCCEEEECCC--
Confidence 477899999987 677777777775 6799999999998888754321 1 11111100100 01235898875321
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ...+..+.+.|+++|.++...
T Consensus 235 ---~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---c-HHHHHHHHHhcccCCEEEEEC
Confidence 1 236778899999999998764
No 337
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.43 E-value=0.18 Score=47.35 Aligned_cols=58 Identities=28% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-----CeEEEEcCC
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDA 166 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~d~ 166 (337)
..++|..|.|+-||.|-+++.++.. +++|++-|+++++++..+.+...+ ++..+..|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 4468999999999999999999988 799999999999999999886532 255566665
No 338
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.18 E-value=2.3 Score=39.86 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHH-HHHhhCCCCCeEEEE-cCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLA-KAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~-~a~~~~~~~~~~~~~-~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++++||-.|+| .|..+..+++.. +.++++++.++.... .+++... . .++. .+...+....+.+|+|+-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga-~--~vi~~~~~~~~~~~~~~~D~vid~~g- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGA-D--SFLVSTDPEKMKAAIGTMDYIIDTVS- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCC-c--EEEcCCCHHHHHhhcCCCCEEEECCC-
Confidence 368899989986 467777777775 678888888765443 3333211 1 1111 110011100124788874322
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ...+.+..+.|++||+++....
T Consensus 257 ----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 2 2367788999999999987753
No 339
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.05 E-value=0.98 Score=42.65 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=57.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++.+|+=+|+| .|..+...+... +++|+.+|.+++.++.+.+.... .+.....+..++.-.-..+|+|+..-....-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 45679999998 466666666665 57899999998877766544321 1111111111111011358999975422111
Q ss_pred CCHHHHHHHHHHhccCCCEEEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+.+.-+-++..+.++||+.++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 12222346666778999887754
No 340
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.90 E-value=5.3 Score=36.51 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC----CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~----~~~~~~fD~i~~~ 182 (337)
.++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++... . .++..+-.+. ....+.+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGA-T--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-e--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 377899999876 366777777775 555 8899999998888765422 1 1221111110 1133568999853
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ....+.++.+.|+++|+++...
T Consensus 234 ~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1357788899999999998764
No 341
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.43 E-value=1.8 Score=40.04 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=66.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C-CC-CCCCccEEEecc
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PF-PTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~-~~-~~~~fD~i~~~~ 183 (337)
+++++||=.|. |.|.+++.|++.... +++++--+++-.+.+++.....-+.+...|+.+ . .. ....+|+|+-.-
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 36899999984 578899999999744 777887778777777765543333444444321 1 12 223599998532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
. ...+.+....|+++|+++......
T Consensus 220 G-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 G-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred C-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 2 246777899999999999875543
No 342
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.28 E-value=2.3 Score=39.20 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~--~~~~~~fD~i~~~~~ 184 (337)
.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.....-+.....+. ..+ ...+..+|+++....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 4788999998874 77778888875 789999988888888876543111011111111 001 012345899986421
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-...+.++.+.|+++|.++...
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1346788899999999988764
No 343
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=88.12 E-value=0.99 Score=43.44 Aligned_cols=106 Identities=17% Similarity=0.032 Sum_probs=73.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC----C---CCCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED----L---PFPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~----~---~~~~~~fD~i 179 (337)
.+..+|-||-|.|.+...+...+|..++++++++|++++.|++.... .+..+...|..+ . .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 56789999999999999999888989999999999999999976432 122233333211 0 1245579988
Q ss_pred Eec----ccccccCC--H----HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 180 VSA----GSIEYWPD--P----QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 180 ~~~----~~l~~~~~--~----~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
... . .|-+.- + +.++..+...|.|.|.+++.-....
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 862 2 222222 1 3689999999999999987654443
No 344
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.11 E-value=2.6 Score=39.29 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=62.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEc-CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEG-DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~-d~~~-~-~~~~~~fD~i~~~ 182 (337)
.++++||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++...... +..... +..+ + ....+.+|+|+-.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 47899999997 4788888888885 6789999999988888763322111 111101 1110 0 0112358888743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. ...+..+.+.|++||++++...
T Consensus 236 vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC-------HHHHHHHHHHhccCCEEEEECc
Confidence 21 1467888999999999987653
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.95 E-value=2.5 Score=39.18 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~~ 181 (337)
+++.+||-.|+| .|..+..+++..+...++++|.+++..+.+++... . .++..+-.+. . .....+|+|+.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA-T--DIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--eEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 478899988876 46677777777643469999999988888876422 1 1111110110 0 12245898884
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... . ...+.++.+.|+++|+++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 242 AGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 221 1 2467889999999999987643
No 346
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.89 E-value=7.3 Score=37.02 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc---CCCC-CC--CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG---DAED-LP--FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~---d~~~-~~--~~~~~fD~i~~ 181 (337)
.++++||=.|+| .|..+..+++..+...++.+|.++.-++.+++... . .+... +..+ +. .....+|+++-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--E-TVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--e-EEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 367888888886 36666777777543346677899888988887532 1 12111 1100 10 12235898885
Q ss_pred cccccc--------cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEY--------WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-.. ..+....+++..+.+++||++++...
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 433210 01223588999999999999998764
No 347
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.82 E-value=0.76 Score=43.42 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=53.3
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCCCCC--CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 145 HQLAKAKQKEPLKECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+..+..++++ .+++++.+++.+.- .+++++|.++......++++. .+.++++.+.++|||++++-....+
T Consensus 265 e~f~~lr~~~--drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 265 ENFEALRARL--DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred hHHHHHhcCC--CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 3444444444 67899999886532 457899999999999988764 4789999999999999998765443
No 348
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.80 E-value=2.8 Score=38.65 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~--~~~~~~fD~i~~~~~ 184 (337)
+++.+||..|+| .|..+..+++..+...+++++.++...+.+++.....-+.....+..+ + ....+.+|+++....
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 367899988876 477777788876324788998888877777654311001111111100 0 012346998885321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
- ...+.+..+.|+++|+++...
T Consensus 246 ~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 F------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C------HHHHHHHHHHhhcCCEEEEEc
Confidence 1 247788899999999988654
No 349
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.70 E-value=2.6 Score=38.46 Aligned_cols=93 Identities=18% Similarity=0.072 Sum_probs=62.0
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
.++.+||=.| .|.|..+..+++.. +.++++++.+++..+.+++... . .++..+-.+. ....+.+|+|+-
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga-~--~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGF-D--AVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-C--EEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 4788998887 45788888888885 6799999999998888876422 1 1111111111 011245898874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .. ..+....+.|+++|+++...
T Consensus 218 ~~-----g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NV-----GG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CC-----CH--HHHHHHHHhhccCCEEEEEc
Confidence 32 11 46788899999999998764
No 350
>PRK11524 putative methyltransferase; Provisional
Probab=87.65 E-value=0.53 Score=42.70 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=37.2
Q ss_pred CeEEEEcCCCCC--CCCCCCccEEEeccccc-------c---c------CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 158 ECKIVEGDAEDL--PFPTDYADRYVSAGSIE-------Y---W------PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 158 ~~~~~~~d~~~~--~~~~~~fD~i~~~~~l~-------~---~------~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+..++++|+.+. .+++++||+|++.=-.. . + .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446788888553 35677899999832110 0 0 001368999999999999999863
No 351
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.65 E-value=2.9 Score=38.32 Aligned_cols=95 Identities=18% Similarity=0.036 Sum_probs=61.7
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEc-CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEG-DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~-d~~~-~-~~~~~~fD~i~~~ 182 (337)
.++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+++... .. +..... +..+ . ....+.+|+|+-.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa-~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGF-DVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-CEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 47889998884 5788888888875 6799999999998888876432 11 111110 1111 0 0112358888742
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. .. ..+....+.|+++|+++...
T Consensus 215 ~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 V-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 2 21 24578899999999999764
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.59 E-value=6 Score=37.88 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=64.0
Q ss_pred HHhccccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCcc
Q 019684 99 DDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 177 (337)
+.+++.....-++++|+=+|+|. |......++.. +++|+.+|.++...+.|++. +.+.. +.++. . ..+|
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~--~~~e~-v--~~aD 259 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVM--TMEEA-V--KEGD 259 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEc--cHHHH-H--cCCC
Confidence 44444444434789999999996 55555555554 67999999999888887753 22222 11111 1 2479
Q ss_pred EEEecccccccCCHHHHHHH-HHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIRE-AYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~i~~~ 213 (337)
+|+... ... .++.. ..+.+|+||.++....
T Consensus 260 VVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 260 IFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 998642 222 34554 5899999999988764
No 353
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.14 E-value=0.72 Score=43.12 Aligned_cols=121 Identities=13% Similarity=0.065 Sum_probs=80.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh----------hCCC--CCeEE
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ----------KEPL--KECKI 161 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~----------~~~~--~~~~~ 161 (337)
.......+.+.+.+. +++.-.|+|+|.|.....++.......-+|+++....-+.+.. .+.. ..+..
T Consensus 177 ~~~ql~si~dEl~~g-~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLG-PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccC-CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 344455556666664 7888999999999999988887555667788776543333332 1221 23677
Q ss_pred EEcCCCCCC---CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 162 VEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 162 ~~~d~~~~~---~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+++++.+.. .-....++|+++++.. -++...-+.++..-+++|-+++=..+..+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 888876532 2234588999888775 33334455699999999999987666544
No 354
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=86.99 E-value=2.3 Score=39.94 Aligned_cols=103 Identities=21% Similarity=0.134 Sum_probs=72.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCCC--------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP-------------- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~-------------- 170 (337)
.+.++||.+|+.+.....+++.++..+--|+++..+.+..+...... .++.+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 46799999999999999999998777788899988888877754332 22344444432221
Q ss_pred ---------------CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 171 ---------------FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 171 ---------------~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
++...+|. ..+.-|+++...++......++|+|.+.+.+...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~ 316 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIR 316 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcC
Confidence 12223333 4455566666778899999999999999876544
No 355
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.66 E-value=1.4 Score=39.31 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 170 (337)
.++..++|.|||.|.++..++... +...++.||-...-...-...-.. ..+.=+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 467899999999999999999887 457899999865433222221111 23455566766543
No 356
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.52 E-value=6.4 Score=36.74 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+||-.|+| .|..+..+++.. +.+++.++.+++....+.+..... .++. .+...+......+|+++-..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~--- 252 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGAD--DYLVSSDAAEMQEAADSLDYIIDTV--- 252 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCc--EEecCCChHHHHHhcCCCcEEEECC---
Confidence 467888888875 466777777775 678888888877665554433211 1111 11011100112478777432
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+..+.+.|++||+++....
T Consensus 253 --g-~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 253 --P-VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --C-chHHHHHHHHHhccCCEEEEECC
Confidence 1 12467778899999999988754
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.65 E-value=4.7 Score=37.81 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE--cCCCC-C-CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE--GDAED-L-PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~--~d~~~-~-~~~~~~fD~i~~~~ 183 (337)
+++++||=.|+|. |..+..+++..+..+|+++|.+++.++.+++.....-+.... .+..+ + ....+.+|+|+-..
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 4789999999864 667777777753337999999999999997653211011110 00000 0 01122588887432
Q ss_pred cccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
. . ...+.+..+.+++| |++++...
T Consensus 264 G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 264 G-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred C-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 1 34677788899886 99887654
No 358
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.64 E-value=1.2 Score=34.89 Aligned_cols=88 Identities=23% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCCEEEEEcCccc-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~ 187 (337)
+..+|+|||-|.= ..+..|++. +..|+++|+.+. .++ .++.++..|+.+.... -...|+|++...-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP-- 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPP-- 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCC--
Confidence 3459999999964 455566666 799999999887 222 4678999999773321 1348999975432
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++.+..+-++.+.+ |.-+++..
T Consensus 81 -~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 81 -PELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred -hHHhHHHHHHHHHh--CCCEEEEC
Confidence 34444444444433 45555543
No 359
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.48 E-value=5.1 Score=36.97 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-------C--CCCCCCcc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------L--PFPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-------~--~~~~~~fD 177 (337)
.++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++... . .++..+-.+ + ......+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKELGA-T--HTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-c--EEeccccccchhHHHHHHHHhCCCCCC
Confidence 4788888888765 77777788875 555 8999988888887765321 1 111111111 0 12234599
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+|+....- ...+.+..+.|+++|+++...
T Consensus 237 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 99854221 236788899999999998764
No 360
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.18 E-value=4.5 Score=37.87 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--C-CCC-CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--A-EDL-PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~-~~~-~~~~~~fD~i~~~~ 183 (337)
.++.+||=.|+| .|..+..+++..+..+|+++|.++...+.+++.....-+.....+ . +.+ ....+.+|+|+-..
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 478899988886 366666777776333799999999999888754321101111100 0 000 01123589888432
Q ss_pred cccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
.. ...+.+..+.|+++ |++++...
T Consensus 263 -----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 -----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred -----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 11 24677888899886 99987654
No 361
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=84.92 E-value=4.6 Score=37.18 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcC---CCCC-C-CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGD---AEDL-P-FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d---~~~~-~-~~~~~fD~i~~ 181 (337)
.++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++... . .++..+ ..++ . .....+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-D--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-C--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 4778999998765 77777777775 565 9999998888887754321 1 111111 0000 1 12234899985
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .....+..+.+.|+++|.++...
T Consensus 234 ~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 41 12346788899999999988765
No 362
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.86 E-value=4.7 Score=31.04 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCEEEEEcCcccH-HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEeccccccc
Q 019684 111 NMLVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYW 188 (337)
Q Consensus 111 ~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~~ 188 (337)
.++|.|||-|-=. .+..|++. ++.++++|+++. ++. .+++++..|+.+.... -...|+|+| +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~g~~~v~DDitnP~~~iY~~A~lIYS------i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-EGLRFVVDDITNPNISIYEGADLIYS------I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-ccceEEEccCCCccHHHhhCccceee------c
Confidence 3589999998643 44555555 799999999776 222 5789999999874321 134788885 3
Q ss_pred CCHHHHHHHHHHhccC-CCEEEEE
Q 019684 189 PDPQRGIREAYRVLKL-GGKACII 211 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkp-gG~l~i~ 211 (337)
.-+.++.+.+.++-+. |..+++.
T Consensus 78 RpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 78 RPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred CCCHHHHHHHHHHHHhhCCCEEEE
Confidence 3344444444444433 3344443
No 363
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=28 Score=31.80 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCC------------------------CeEEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLK------------------------ECKIVE 163 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~------------------------~~~~~~ 163 (337)
....|+.+|||.-.....+...+ ....++=||.++..-..+......+ +-..+-
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 55789999999988887777765 4577888898777666662211111 011222
Q ss_pred cCCCCCC----------CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----
Q 019684 164 GDAEDLP----------FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV---- 227 (337)
Q Consensus 164 ~d~~~~~----------~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---- 227 (337)
.|+.++. ...+-.-++++-.++.+++.. ...++.+.......+.+ +.+...+...+...+...
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv-~YEQi~~~D~Fg~vM~~nlk~r 245 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFV-NYEQINPNDRFGKVMLANLKRR 245 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEE-EEeccCCCChHHHHHHHHHHhc
Confidence 2332211 001112234444555555432 24566666655544444 444333332222222111
Q ss_pred ------hccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 228 ------WMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 228 ------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
...+.+.+..++-+.++||+.+.+.++..-
T Consensus 246 ~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei 281 (335)
T KOG2918|consen 246 GCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEI 281 (335)
T ss_pred CCCCchhhhcccHHHHHHHHHhcCCceeehhhHHHH
Confidence 123578999999999999999999887643
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.69 E-value=5.8 Score=36.57 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEc-CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEG-DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~-d~~~-~-~~~~~~fD~i~~~ 182 (337)
.++++||=.|+ |.|..+..+++.. +.++++++.+++..+.+++...... +..... |..+ + ....+.+|+|+-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 47899999886 5788888888875 6789999999988888876332121 111111 1110 0 0112458888743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. . ...+.+..+.|+++|+++...
T Consensus 229 ~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 V-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred C-----C--HHHHHHHHHHhccCcEEEEec
Confidence 2 1 246788899999999998764
No 365
>PTZ00357 methyltransferase; Provisional
Probab=84.56 E-value=3.6 Score=41.55 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=62.1
Q ss_pred CEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHhh------CC------CCCeEEEEcCCCCCCCCC--
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQK------EP------LKECKIVEGDAEDLPFPT-- 173 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~------~~------~~~~~~~~~d~~~~~~~~-- 173 (337)
..|+-+|+|-|-+.....+.. -..++++||-++........+ .. ...++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 358999999998776554432 136899999996643333222 11 123899999998764321
Q ss_pred ---------CCccEEEecccccccCCH---HHHHHHHHHhccC----CCE
Q 019684 174 ---------DYADRYVSAGSIEYWPDP---QRGIREAYRVLKL----GGK 207 (337)
Q Consensus 174 ---------~~fD~i~~~~~l~~~~~~---~~~l~~~~~~Lkp----gG~ 207 (337)
+++|+||+- .|..+.|- .+-|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999973 34444332 3678888888887 776
No 366
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=84.56 E-value=10 Score=34.45 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++... . ... +..+. ...+.+|+++-..
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~---~~~-~~~~~-~~~~~~d~vid~~---- 222 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRLGV-E---TVL-PDEAE-SEGGGFDVVVEAT---- 222 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCC-c---EEe-Ccccc-ccCCCCCEEEECC----
Confidence 367899988865 355555556664 6789999999999988886321 1 111 11111 2334699988532
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ....+..+.+.|+++|.++...
T Consensus 223 -g-~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 -G-SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -C-ChHHHHHHHHHhhcCCEEEEEc
Confidence 1 1346778888999999998743
No 367
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=84.55 E-value=4.9 Score=37.67 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEc--CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEG--DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--d~~~-~-~~~~~~fD~i~~~ 182 (337)
+++.+||=.|+| .|..+..+++.. +. +|+++|.+++.++.+++.....-+..... +..+ + ...++.+|+|+-.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 478999999876 366666777775 55 79999999999998875432110111110 0100 0 0112358988753
Q ss_pred ccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
.. . ...+.+..+.|+++ |++++...
T Consensus 264 ~g-----~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 264 IG-----N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC-----C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 21 1 24677888999997 99987754
No 368
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=83.70 E-value=5.8 Score=37.45 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHH-HHHHHhhCCCCCeEEEEc--CCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECKIVEG--DAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~~~--d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+||-.|+| .|..+..+++.. +.+++++|.+++. .+.+++.. .+.... +...+.-..+.+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~lG----a~~~i~~~~~~~v~~~~~~~D~vid~~- 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRLG----ADSFLVTTDSQKMKEAVGTMDFIIDTV- 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhCC----CcEEEcCcCHHHHHHhhCCCcEEEECC-
Confidence 368899988886 466777777775 6789999887654 45554332 111111 1001000012478887432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+.+..+.+++||.++....
T Consensus 251 ----G-~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 ----S-AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----C-cHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 22467788899999999987753
No 369
>PLN02494 adenosylhomocysteinase
Probab=83.57 E-value=5.5 Score=38.71 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=62.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCc
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 176 (337)
.+.+++.....-.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... +..+. ++++. . ...
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv--~leEa-l--~~A 310 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVL--TLEDV-V--SEA 310 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeec--cHHHH-H--hhC
Confidence 344444444434689999999995 44444444444 67999999988654444432 22221 22221 1 247
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+|+.... +..-+..+....+|+||.|+.....
T Consensus 311 DVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 311 DIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CEEEECCC-----CccchHHHHHhcCCCCCEEEEcCCC
Confidence 99986322 2222447788999999999987653
No 370
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.37 E-value=13 Score=32.73 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=47.1
Q ss_pred CEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC------CCCcc
Q 019684 112 MLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP------TDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~------~~~fD 177 (337)
++||-.|++.|. ++..+++. +.+|+.++.++..++...+.....++.++.+|+.+.. +. .++.|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457778765432 33334444 7899999998887776655443356888899996532 11 34689
Q ss_pred EEEeccccc
Q 019684 178 RYVSAGSIE 186 (337)
Q Consensus 178 ~i~~~~~l~ 186 (337)
+++.+....
T Consensus 80 ~vi~~ag~~ 88 (260)
T PRK08267 80 VLFNNAGIL 88 (260)
T ss_pred EEEECCCCC
Confidence 988765543
No 371
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.24 E-value=5.7 Score=36.81 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-CC-C-CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DL-P-FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~-~-~~~~~fD~i~~~~ 183 (337)
.++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++.....-+.....+.. .+ . ...+.+|+|+-..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 367888888875 356666677775 55 89999999998888865422100010111110 00 0 1223489988532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....++++.+.|+++|+++....
T Consensus 250 g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 G------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred C------CHHHHHHHHHhccCCCEEEEEcc
Confidence 2 12467888999999999987654
No 372
>PRK10083 putative oxidoreductase; Provisional
Probab=83.03 E-value=7.5 Score=35.68 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+||=.|+|. |..+..+++. .+...++++|.+++..+.+++.....-+.....+. +.+.-....+|+|+...
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~-- 236 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAA-- 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECC--
Confidence 4788999999753 5555556664 33345888999998888887643211011111111 11110111245665322
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. ...+.+..+.|+++|+++....
T Consensus 237 ---g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 237 ---CH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ---CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 2467888999999999988754
No 373
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=82.89 E-value=18 Score=34.40 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred CCCCEEEEEc-Cc-ccHHHHHHHhhCC--CCeEEEEeCCHHHHHHHHhhCCCC----CeEEEEcCCC---CC-----C-C
Q 019684 109 NRNMLVVDVG-GG-TGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAE---DL-----P-F 171 (337)
Q Consensus 109 ~~~~~VLDiG-cG-~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~---~~-----~-~ 171 (337)
+++.+||=+| +| .|..+..+++..+ ..+|+++|.+++.++.+++..... +......|.. ++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4678999887 34 6888888887742 247999999999999998752110 2221111211 11 0 1
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
....+|+|+.... . ...+....+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2235888875321 1 35778889999988876554
No 374
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.80 E-value=10 Score=34.77 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCC-------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLP-------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~-------~~~~~fD~i 179 (337)
++|.+|.-+|+|. |.....-++..+..+++|+|++++-.+.|++.... +|+. .|..+ | ..++.+|.-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT---e~iNp~d~~~-~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT---EFINPKDLKK-PIQEVIIEMTDGGVDYS 266 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc---eecChhhccc-cHHHHHHHHhcCCceEE
Confidence 4778888888886 44444445555668999999999999999976432 2222 13333 2 234556654
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+ +.+-+ .++++++....+.| |.-++...
T Consensus 267 f-----Ec~G~-~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 267 F-----ECIGN-VSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred E-----EecCC-HHHHHHHHHHhhcCCCeEEEEEe
Confidence 4 22222 35778888888888 88777643
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.74 E-value=14 Score=34.18 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=76.1
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------C---------CCeEEEEcCCCCCCCC
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------L---------KECKIVEGDAEDLPFP 172 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~---------~~~~~~~~d~~~~~~~ 172 (337)
-.+|-=||+|+ ..++..++.. |.+|+..|.+++.++.+++... . .++++. .|+++ .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---C 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---H
Confidence 35788999984 4555566665 8999999999988776654211 0 111111 11111 0
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh------------hhhhhc-c--------C
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-L--------F 231 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------------~~~~~~-~--------~ 231 (337)
-...|+|+-. +.+...-...+++++.+.++|+..|.-.+.......+... ++..+. . .
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~ 159 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGER 159 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCC
Confidence 1236777643 3333333457899999999998744433332221111111 111110 0 0
Q ss_pred C---CHHHHHHHHHhCCCcEEEEE-EcC
Q 019684 232 P---KEEEYIEWFQKAGFKDVQLK-RIG 255 (337)
Q Consensus 232 ~---~~~~~~~~l~~aGF~~v~~~-~~~ 255 (337)
. +.+...+++++.|.+.|.+. +..
T Consensus 160 T~~e~~~~~~~f~~~lGk~pV~v~kd~p 187 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMRPLHVRKEVP 187 (321)
T ss_pred CCHHHHHHHHHHHHHcCCEeEecCCCCc
Confidence 1 23556788999999988884 443
No 376
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.72 E-value=7.8 Score=35.87 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=67.1
Q ss_pred ccccCCCCCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc----CCCC--CCCCCC
Q 019684 102 LEPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED--LPFPTD 174 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~----d~~~--~~~~~~ 174 (337)
++.... +++.+|.-+||| -|..++.-+......+++++|+++.-++.|++...- .++.. |+-+ ....++
T Consensus 178 ~nta~v-~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT---~~vn~~~~~~vv~~i~~~T~g 253 (366)
T COG1062 178 VNTAKV-EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT---HFVNPKEVDDVVEAIVELTDG 253 (366)
T ss_pred hhcccC-CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc---eeecchhhhhHHHHHHHhcCC
Confidence 333444 488999999997 466667767776678999999999999999976432 22221 1210 012233
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..|.++ +..-+. ..+++....+.++|..+++...
T Consensus 254 G~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 254 GADYAF-----ECVGNV-EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEEEecC
Confidence 466553 222233 3788888888889999887543
No 377
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.56 E-value=2.8 Score=38.61 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=73.5
Q ss_pred EEEEcCcccHHHHHHHhhCCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecccccc----
Q 019684 114 VVDVGGGTGFTTLGIVKHVDAKNVT-ILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY---- 187 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~~~~~v~-gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~---- 187 (337)
|+|+-||.|.+..-+.+. +.+++ ++|+++...+.-+.+... .+..+|+.++... -..+|+++...--..
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~---~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN---KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC---CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 689999999999988876 67755 699999999998887643 4456787665421 124899887322111
Q ss_pred -----cCCHH-HHHHHHHHh---ccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 -----WPDPQ-RGIREAYRV---LKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 -----~~~~~-~~l~~~~~~---LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..|.. .++.++.++ ++|. +++.+....-.... .-.....+.+.|++.||.+...
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~--------~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHD--------KGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcc--------cchHHHHHHHHHHhCCCEEEEE
Confidence 12332 344444444 4663 44444332111000 0112466778899999976443
No 378
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.55 E-value=17 Score=33.41 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=59.7
Q ss_pred CCEEEEEcC--cccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEec
Q 019684 111 NMLVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (337)
Q Consensus 111 ~~~VLDiGc--G~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~~ 182 (337)
+++||=.|+ |.|..+..+++.. +. +|++++.+++..+.+++...... ++..+-.++ ...++.+|+|+-.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~--vi~~~~~~~~~~i~~~~~~gvd~vid~ 231 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDA--AINYKTDNVAERLRELCPEGVDVYFDN 231 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcE--EEECCCCCHHHHHHHHCCCCceEEEEC
Confidence 389998885 5788888888886 56 89999999988888776332211 121111111 0112458988743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. .. ..+.+..+.|+++|+++...
T Consensus 232 ~-----g~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 232 V-----GG--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C-----Cc--HHHHHHHHHhccCCEEEEEe
Confidence 2 12 23577889999999998754
No 379
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.42 E-value=22 Score=30.60 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCCCCCC-C---------CCCCc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLP-F---------PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~-~---------~~~~f 176 (337)
++++||-.|++. ..+..+++.+ .+.+|++++-+++..+...+.. ...++.++.+|+.+.. . .-+..
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999864 3333333322 3789999999887665553322 1235788888986532 0 01346
Q ss_pred cEEEecccccccC---C--------------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWP---D--------------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~---~--------------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|.++......... + ...+++.+...++++|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8777654322111 1 11345666667778888877654
No 380
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=82.39 E-value=23 Score=32.85 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC--------C-CCCCCcc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------P-FPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------~-~~~~~fD 177 (337)
.++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++... . .++..+-... . .....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGA-D--ATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-C--eEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 367888888875 356666677775 56 89999999888877764321 1 1111110000 0 1124589
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+-... ....+....+.|+++|+++....
T Consensus 252 ~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASG------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCC------ChHHHHHHHHHhccCCEEEEEcC
Confidence 8884321 12467788899999999987753
No 381
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.28 E-value=15 Score=37.96 Aligned_cols=136 Identities=12% Similarity=0.028 Sum_probs=82.2
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------C------------CCeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~------------~~~~~~~~d~~~~ 169 (337)
.+|.-||+|+ ..++..++.. +.+|+.+|.+++.++.+.++.. . .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 5799999997 3445555555 8999999999999887664321 0 122222 233221
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh------------hhhhc--------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF------------ADVWM-------- 229 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~~-------- 229 (337)
...|+|+=. +.+.+.-.+++++++.++++|+..|.-.+...+...+.... ...+.
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 347777733 44444445689999999999997776554443322221111 11100
Q ss_pred cC----CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 LF----PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 ~~----~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.. .+.+...++++..|.+.+.+.+..
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 495 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCP 495 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcC
Confidence 00 123566788999999999886554
No 382
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.87 E-value=20 Score=37.02 Aligned_cols=138 Identities=17% Similarity=0.013 Sum_probs=82.0
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------------------CCeEEEEcCCCC
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAED 168 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------~~~~~~~~d~~~ 168 (337)
-.+|.-||+|+ ..++..++.. .+.+|+.+|.+++.++.+.++... .++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 36799999997 3455555523 389999999999988887543210 122222 22221
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh------------hhhc-------
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM------- 229 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------------~~~~------- 229 (337)
. ...|+|+=. +.+.+.-.+++++++.++++|+..|.-.+...+...+..... ..+.
T Consensus 387 --~--~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 387 --F--KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred --h--ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 1 347877743 444444456899999999999988865544433222211111 1110
Q ss_pred -c-CC---CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 -L-FP---KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 -~-~~---~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. .. +.+...+++++.|...+.+.+..
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 0 01 24566778899999988886543
No 383
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.72 E-value=3 Score=33.75 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=24.6
Q ss_pred EEcCccc--HHHHHHH--hhCCCCeEEEEeCCHHHHHHHHhh
Q 019684 116 DVGGGTG--FTTLGIV--KHVDAKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 116 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~~~~a~~~ 153 (337)
|||++.| .....+. ...+..+|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 344678999999999998887776
No 384
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.38 E-value=18 Score=31.85 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~f 176 (337)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++.++...+... .++.++.+|+.+.. +. -+..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASLG-ERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45788888865442 33334444 7899999998776555444332 45778888986532 11 1357
Q ss_pred cEEEeccccccc----CCH---H-----------HHHHHHHHhc-cCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYW----PDP---Q-----------RGIREAYRVL-KLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~----~~~---~-----------~~l~~~~~~L-kpgG~l~i~~~ 213 (337)
|+++.+...... .+. . .+.+.+...+ +++|.++++..
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS 137 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS 137 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 888876443211 111 1 2344445555 66788877643
No 385
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.30 E-value=8.6 Score=35.32 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHH-HHHHhhCCCCCeEEEEc-CCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|+-+|+|. |..+..........+|+.+|.+++.. +.+.+. .. ..... |..+. -...|+|++...-.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~---~~~~~~~~~~~---l~~aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG---NAVPLDELLEL---LNEADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC---eEEeHHHHHHH---HhcCCEEEECCCCC
Confidence 578999999974 44333333332346899999998754 444432 21 22221 21111 13489999876554
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+. ...+..+......++.++ .+..
T Consensus 250 ~~---~~~~~~~~~~~~~~~~~v-iDla 273 (311)
T cd05213 250 HY---AKIVERAMKKRSGKPRLI-VDLA 273 (311)
T ss_pred ch---HHHHHHHHhhCCCCCeEE-EEeC
Confidence 43 333444433332234544 4443
No 386
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.13 E-value=9.5 Score=35.14 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC---CCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDA---EDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD~i~~~~ 183 (337)
.++.+||-.|+|. |..+..+++.. +. ++++++-+++-.+.+++.....-+.....+. .++ ...+.+|+|+...
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECC
Confidence 3678888888764 66777777775 45 7888888887777766532210000001111 011 1234589888532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ......++.+.|+++|.++....
T Consensus 240 g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 240 G------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred C------CHHHHHHHHHHhccCCEEEEEcc
Confidence 1 12457788899999999987643
No 387
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.13 E-value=9.6 Score=35.64 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-C----CCC-C-CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-D----AED-L-PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d----~~~-~-~~~~~~fD~i~ 180 (337)
.++.+||=.|+| .|..+..+++..+..+|+++|.+++..+.+++... . .++.. + ..+ + ....+.+|+++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV-T--EFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 478999999876 36666777777533389999999999998876432 1 11111 1 000 0 01123588877
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-.. . ....+....+.+++| |++++...
T Consensus 263 d~~-----G-~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 ECT-----G-NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ECC-----C-ChHHHHHHHHHhhcCCCEEEEECc
Confidence 431 1 134677788899996 99988754
No 388
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=80.95 E-value=3.6 Score=37.26 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
.+.||+|+..+...|.-.+. +.++++|+|.|++...-.-...-...... -.+.+.++++++||+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQE------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHH------HHHHHHHHHHHCCCcccc
Confidence 35699999876665554443 77889999999987642110000000000 146788999999998653
No 389
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=80.94 E-value=8 Score=34.29 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcccHHHHHHHh---hC--CCCeEEEEeCCH--------------------------HHHHHHHhhCCC--
Q 019684 110 RNMLVVDVGGGTGFTTLGIVK---HV--DAKNVTILDQSP--------------------------HQLAKAKQKEPL-- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~---~~--~~~~v~gvD~s~--------------------------~~~~~a~~~~~~-- 156 (337)
-...|+|.||-.|..+..++. .+ ++-+++++|.=+ ..++..+++...
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357899999999987765433 22 345688877432 134445555432
Q ss_pred ---CCeEEEEcCCC-CCC-CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 157 ---KECKIVEGDAE-DLP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 157 ---~~~~~~~~d~~-~~~-~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.++.++.+.+. .+| .+.+++-++..-.-+ ...-...|+.++..|.|||.+++-+...
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 46899999984 344 222333333322111 1112478999999999999999987665
No 390
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.86 E-value=2.2 Score=39.10 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=76.7
Q ss_pred EEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEeccccc--
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE-- 186 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~l~-- 186 (337)
+++|+-||.|.+..-+.+. +. .+.++|+++.+.+.-+.|.. ....+|+.++. ++. .+|+++...--.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCceE
Confidence 6899999999999998887 54 56789999999999988765 77888987764 333 499998732211
Q ss_pred -------ccCCHH----HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 -------YWPDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 -------~~~~~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...|.. .-+-++.+.++|.- +++ |....-...... ...+.+.+.|++.|+.+ ....+.
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~-ENV~~l~~~~~~--------~~~~~i~~~l~~lGY~v-~~~vln 143 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKPKY-FLL-ENVPGLLSSKNG--------EVFKEILEELEELGYNV-QWRVLN 143 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS-SE-EEE-EEEGGGGTGGGH--------HHHHHHHHHHHHTTEEE-EEEEEE
T ss_pred eccccccccccccchhhHHHHHHHhhccceE-EEe-cccceeeccccc--------cccccccccccccceee-hhcccc
Confidence 122332 22334445567733 333 322111100000 12467888999999975 444444
Q ss_pred cccc
Q 019684 256 PKWY 259 (337)
Q Consensus 256 ~~~~ 259 (337)
...|
T Consensus 144 a~~y 147 (335)
T PF00145_consen 144 AADY 147 (335)
T ss_dssp GGGG
T ss_pred HhhC
Confidence 3333
No 391
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=80.80 E-value=7.1 Score=35.87 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~ 184 (337)
.++.+||=.||| .|..+..+++.. +.+++.++.+++..+.+++... . .++...-.+.. .....+|+++...
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~~~- 236 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGA-H--HYIDTSKEDVAEALQELGGAKLILATA- 236 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCC-c--EEecCCCccHHHHHHhcCCCCEEEECC-
Confidence 367899999875 366666677775 6789999999888888865432 1 11111101110 0012478887421
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+..+.+.|+++|.++....
T Consensus 237 ----g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 237 ----P-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ----C-chHHHHHHHHHcccCCEEEEEec
Confidence 1 13477888999999999987643
No 392
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.79 E-value=26 Score=33.54 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
-.+++|+=+|+|. |......++.. +.+|+++|.++.....+... +..+ .+.++. . ...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~----G~~v--~~leea-l--~~aDVVItaT---- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD----GFRV--MTMEEA-A--KIGDIFITAT---- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc----CCEe--CCHHHH-H--hcCCEEEECC----
Confidence 3789999999996 55555555554 78999999988655444421 2222 122221 1 2479987632
Q ss_pred cCCHHHHHH-HHHHhccCCCEEEEEcCC
Q 019684 188 WPDPQRGIR-EAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 188 ~~~~~~~l~-~~~~~LkpgG~l~i~~~~ 214 (337)
.. ..++. +....+|+|++++.....
T Consensus 259 -G~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 -GN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred -CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 22 34444 588999999999887654
No 393
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=80.75 E-value=6.1 Score=35.43 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=73.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCCCCC---CCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFPT---DYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~~~~---~~fD~i~~~~ 183 (337)
.|+.|+-+| -.-..++.++-..-..++..+|+++..+....+- ...+|++.+..|+.+ |+++ ..||+++..-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc
Confidence 578899999 3334444433332246899999999888766544 344668888889865 4333 5799887421
Q ss_pred cccccCCHHHHHHHHHHhccCC---CEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHH-HHHhCCCcEEEE
Q 019684 184 SIEYWPDPQRGIREAYRVLKLG---GKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE-WFQKAGFKDVQL 251 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~ 251 (337)
-+.++....++.+=...||.- |++.++..... ..+ ..+++. +..+-||.+.++
T Consensus 230 -peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ress---idk-----------W~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 230 -PETIKALKLFLGRGIATLKGEGCAGYFGITRRESS---IDK-----------WREIQRILINEMGVVITDI 286 (354)
T ss_pred -hhhHHHHHHHHhccHHHhcCCCccceEeeeecccc---HHH-----------HHHHHHHHHHhcCeeeHhh
Confidence 122223345566666667655 66766533221 111 123444 667778776555
No 394
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=80.51 E-value=11 Score=34.73 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~--~~~~~~fD~i~~~~~ 184 (337)
.++.+||=.|+| .|..+..+++..+..+++++|.++...+.+++.....-+.....+. ..+ ......+|+|+...
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~- 243 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV- 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECC-
Confidence 367787777775 3555566677754378999999888877777542211011111111 000 01234589887432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ...+..+.+.|+++|.++...
T Consensus 244 ----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 ----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred ----CC-HHHHHHHHHhccCCcEEEEec
Confidence 22 335788889999999998764
No 395
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.13 E-value=6.3 Score=36.88 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~~ 182 (337)
.++++||-.|+|. |..+..+++..+...++++|.++...+.+++... . .++..+-.+. ......+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-T--HVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 3678999888764 6777777777643369999999988887775322 1 1111111110 0113458988853
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. . ...+.++.+.|+++|+++....
T Consensus 262 ~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TG-----V-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CC-----C-cHHHHHHHHHhccCCEEEEeCc
Confidence 21 1 2467888999999999987654
No 396
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.10 E-value=18 Score=36.63 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=58.0
Q ss_pred CEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l 185 (337)
.+|+=+|+|. ++..+++.. .+.+++.+|.+++.++.+++ .+...+.+|..+.. ..-++.|.+++.
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vv~~--- 471 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRK----YGYKVYYGDATQLELLRAAGAEKAEAIVIT--- 471 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CCCeEEEeeCCCHHHHHhcCCccCCEEEEE---
Confidence 5677777764 333333321 26799999999999998875 35678999997643 122457777753
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|.+ ..+-...|.+.|..+++....
T Consensus 472 --~~d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 472 --CNEPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred --eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 33433 234445566778888876543
No 397
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.04 E-value=4.9 Score=36.85 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=59.4
Q ss_pred CCCEEEEEcC-cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc--CCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG--DAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGc-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+|++|-=+|- |-|.++..+++.. +.+|+++|-+..--+.+-+.+.... |+.. |-....-..+..|.++-.-.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~--fv~~~~d~d~~~~~~~~~dg~~~~v~-- 255 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADV--FVDSTEDPDIMKAIMKTTDGGIDTVS-- 255 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcce--eEEecCCHHHHHHHHHhhcCcceeee--
Confidence 7888777765 4899999999986 7899999999866666665544332 2211 11001001123443332111
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+ ....+..+.+.||++|.+++....
T Consensus 256 ~~--a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 256 NL--AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ec--cccchHHHHHHhhcCCEEEEEeCc
Confidence 00 223567789999999999987543
No 398
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=79.90 E-value=15 Score=36.16 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC----CCeEEEEeCCHHHHHHHHhhC--CC---CCeEEEEcCCCC-CCC-CCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE--PL---KECKIVEGDAED-LPF-PTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~--~~---~~~~~~~~d~~~-~~~-~~~~fD~ 178 (337)
++..|.|..||+|.++........ ...++|.+..+.+...+..+. .. .......+|-.. ..+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 557899999999999876544321 256899999999999998762 11 112222333322 111 2345788
Q ss_pred EEecccc--------------------cc----cCC-HHHHHHHHHHhccCCCEEEEEc
Q 019684 179 YVSAGSI--------------------EY----WPD-PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 179 i~~~~~l--------------------~~----~~~-~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
|+++--. .| ..+ -..++..+..+|++||+..++-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 7763211 11 111 1257888999999999876653
No 399
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=79.72 E-value=22 Score=36.79 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=83.2
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------C------------CCeEEEEcCCCC
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAED 168 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~------------~~~~~~~~d~~~ 168 (337)
-.+|--||+|+ +.++..++.. +.+|+.+|.+++.++.+.++.. . .++++. .|...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 35789999996 3444555555 8999999999999887764321 0 122221 12211
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh------------hhhc-------
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM------- 229 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------------~~~~------- 229 (337)
+ ...|+|+=. +.+.+.-.+++++++.++++|+..|.-.+...+...+..... ..+.
T Consensus 390 --~--~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv 464 (714)
T TIGR02437 390 --F--DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVI 464 (714)
T ss_pred --h--cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeec
Confidence 1 347887743 455555567899999999999988765544433222211111 0000
Q ss_pred -c-C---CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 -L-F---PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 -~-~---~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. . .+.+...+++++.|.+.|.+.+..
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 0 0 124566788899999998886543
No 400
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.66 E-value=15 Score=33.04 Aligned_cols=136 Identities=15% Similarity=0.041 Sum_probs=75.0
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--------CC------------CCeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PL------------KECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--------~~------------~~~~~~~~d~~~~ 169 (337)
.+|.=||+|. +.++..++.. +.+|+++|.+++.++.++++. .. .++++ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3577889984 4555666665 679999999999886544211 00 02221 223222
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----hccC--------------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----WMLF-------------- 231 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----~~~~-------------- 231 (337)
-+..|+|+..- .+...-...+++++.+.++|+..+.-.........+....... ..++
T Consensus 80 ---~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~ 155 (282)
T PRK05808 80 ---LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIR 155 (282)
T ss_pred ---hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeC
Confidence 13478887531 1212223478999999999887663322222211111111000 0000
Q ss_pred ------CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 232 ------PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 232 ------~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+.+....+++..|...+.+.+..
T Consensus 156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~ 185 (282)
T PRK05808 156 GLATSDATHEAVEALAKKIGKTPVEVKNAP 185 (282)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 124567789999999988875443
No 401
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.25 E-value=37 Score=32.60 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=53.8
Q ss_pred CEEEEEcCccc--HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeE-----EE-EcCCCCCCCCCCCccEEE
Q 019684 112 MLVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECK-----IV-EGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 112 ~~VLDiGcG~G--~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~-----~~-~~d~~~~~~~~~~fD~i~ 180 (337)
.+|.=||.|.- .++..+++. +.+|+++|.++..++..++... .+++. .. .+.... ....+..|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~-~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA-TTTPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee-ecccccCCEEE
Confidence 46888888853 344555555 7899999999998886432110 00000 00 000000 00012468777
Q ss_pred eccccc-------ccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 181 SAGSIE-------YWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 181 ~~~~l~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
..--.. .+......++.+...|++|-.+++.....
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 543221 11122356788889998877766655443
No 402
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.15 E-value=15 Score=33.57 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.+.+|+=+|+|. |..+...+... +++|+.+|.++...+.+++. +..+.. ..++...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~----G~~~~~--~~~l~~~l~~aDiVI~t~----- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM----GLSPFH--LSELAEEVGKIDIIFNTI----- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----CCeeec--HHHHHHHhCCCCEEEECC-----
Confidence 578999999985 44444444444 67999999998877666642 222221 112111113589999742
Q ss_pred CCHHHHHHHHHHhccCCCEEEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+. .-+-++..+.++||+.++-.
T Consensus 219 p~-~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 219 PA-LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred Ch-hhhhHHHHHcCCCCcEEEEE
Confidence 21 22345677889998877644
No 403
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.69 E-value=20 Score=32.41 Aligned_cols=136 Identities=17% Similarity=0.056 Sum_probs=72.8
Q ss_pred CEEEEEcCcc-c-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----------C------------CeEEEEcCC
Q 019684 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----------K------------ECKIVEGDA 166 (337)
Q Consensus 112 ~~VLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~------------~~~~~~~d~ 166 (337)
.+|.=||+|. | .++..++.. +.+|+.+|.+++.++.+++.... . ++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4688899984 3 344555555 77999999999998766542111 0 1111 1121
Q ss_pred CCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----hcc------------
Q 019684 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----WML------------ 230 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----~~~------------ 230 (337)
.. . ...|+|+..- .+.......+++++.+.++|+..++-.........+....... ..+
T Consensus 81 ~~--~--~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 81 ES--L--SDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred HH--h--CCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 11 1 3368877542 2222223568888888888876554222221111111111100 000
Q ss_pred -----CC---CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 231 -----FP---KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 231 -----~~---~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.. +.+...++++..|...+.+.+..
T Consensus 156 v~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 156 VVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 01 23556778899999999886543
No 404
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=77.59 E-value=13 Score=34.25 Aligned_cols=98 Identities=15% Similarity=0.280 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC--CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL--PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~--~~~~~~fD~i~~~~ 183 (337)
.++.+||-.|+| .|..+..+++.. +.+ |++++-++...+.+++.....-+.....+. +.+ ....+.+|+|+...
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 367888877775 466667777775 565 888888888877776543210011111111 000 11234589998542
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+.++.+.|+++|+++....
T Consensus 239 g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 G------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred C------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 13467888999999999987654
No 405
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=77.56 E-value=22 Score=32.39 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++.+||=.|||. |..+..+++.. +.+++.++.+++..+.+++.. ++... +.... .++.+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~g----~~~~~-~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARELG----ADWAG-DSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHhC----CcEEe-ccCcc--CCCcccEEEEcCC---
Confidence 3677888887763 44555556654 689999999888888775432 12111 11111 2345888774321
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
....++++.+.|+++|.++...
T Consensus 235 ---~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 ---VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ---cHHHHHHHHHHhhcCCEEEEEc
Confidence 1247888999999999999765
No 406
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=77.32 E-value=20 Score=34.71 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 111 NMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+++|+=+|-| +|.-+..+..+. +.+|+..|.++.............++.+..+.... +....+|+|+.+-.+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEEEEcCCCCccchhhhhhhccCceeecCccch--hccccCCEEEECCCCC
Confidence 7889999988 566555555543 79999999887773222222233567777765443 2235699999876654
No 407
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.97 E-value=2.3 Score=42.10 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=60.1
Q ss_pred CCCCCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC----C----CCCCCc
Q 019684 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----P----FPTDYA 176 (337)
Q Consensus 106 ~~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~----~----~~~~~f 176 (337)
.+..++..|||+||-+|.|....++..|. .-|+|+|+-|.- .-++|...+.|+..- + ....+.
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 34457889999999999999988888764 568899995532 114555555555321 1 122346
Q ss_pred cEEEecccccc----cCCH-------HHHHHHHHHhccCCCEEE
Q 019684 177 DRYVSAGSIEY----WPDP-------QRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 177 D~i~~~~~l~~----~~~~-------~~~l~~~~~~LkpgG~l~ 209 (337)
|+|+.-.+-.- ..|. -..++-+...|+-||.++
T Consensus 112 dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 87776432211 1111 145666778889999943
No 408
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=76.60 E-value=11 Score=30.81 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=65.4
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
+|-=||+|. ..++..|++. +.+|++.|.+++..+...+. +.. ...+..++- ...|+|++ .+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~----g~~-~~~s~~e~~---~~~dvvi~-----~v~~ 67 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA----GAE-VADSPAEAA---EQADVVIL-----CVPD 67 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT----TEE-EESSHHHHH---HHBSEEEE------SSS
T ss_pred EEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh----hhh-hhhhhhhHh---hcccceEe-----eccc
Confidence 455677764 2344444444 78999999999888777753 222 222222211 23588875 3445
Q ss_pred H---HHHHHH--HHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 191 P---QRGIRE--AYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 191 ~---~~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. +.++.. +...|++|..++-.....+. +..++.+.+++.|...++.-..+
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~---------------~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPE---------------TSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH---------------HHHHHHHHHHHTTEEEEEEEEES
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchh---------------hhhhhhhhhhhccceeeeeeeec
Confidence 3 356666 77777777666654443222 24667788999998877777665
No 409
>PRK08324 short chain dehydrogenase; Validated
Probab=76.58 E-value=20 Score=36.89 Aligned_cols=102 Identities=22% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCEEEEEcCccc--H-HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCC-----CC-----CCC
Q 019684 110 RNMLVVDVGGGTG--F-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP-----FP-----TDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-----~~-----~~~ 175 (337)
++++||-.|++.| . ++..+++. +.+|+.+|.++..++.+.+.... .++.++.+|+.+.. +. .+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4678898886433 2 22333333 68999999998877665544321 36778888886532 11 135
Q ss_pred ccEEEecccccccCC-------------------HHHHHHHHHHhccC---CCEEEEEcC
Q 019684 176 ADRYVSAGSIEYWPD-------------------PQRGIREAYRVLKL---GGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~~~~-------------------~~~~l~~~~~~Lkp---gG~l~i~~~ 213 (337)
+|+|+.+........ ...+++.+.+.+++ ||.+++...
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 899988665432211 12456666777766 688877654
No 410
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=76.18 E-value=22 Score=36.88 Aligned_cols=136 Identities=15% Similarity=0.004 Sum_probs=81.8
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------------------CCeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------~~~~~~~~d~~~~ 169 (337)
.+|--||+|+ +.++..++.. +.+|+.+|.+++.++.+.++... .++++. .|+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 5799999986 3444455555 89999999999998887653210 122222 232221
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh------------hhhhc--------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF------------ADVWM-------- 229 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~~-------- 229 (337)
...|+|+=. +.+.+.-.+++++++.++++|+..|.-.+...+...+.... ...+.
T Consensus 413 ----~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~ 487 (737)
T TIGR02441 413 ----KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIIT 487 (737)
T ss_pred ----ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeC
Confidence 246777632 44544445689999999999998887655443322221111 11110
Q ss_pred c-CC---CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 L-FP---KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 ~-~~---~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. .. +.+...+++++.|...+.+.+..
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 517 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGP 517 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcC
Confidence 0 01 24556778899999988886543
No 411
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=75.98 E-value=14 Score=34.47 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc--CCCC-C-CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG--DAED-L-PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--d~~~-~-~~~~~~fD~i~~~~ 183 (337)
.++.+||=.|+| .|..+..+++..+...+++++.++...+.+++.....-+..... +..+ + ....+.+|+|+-..
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~ 261 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVI 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEECC
Confidence 467888888875 35566666777543458899988988888865432111111111 1100 0 01124589887432
Q ss_pred cccccCCHHHHHHHHHHhcc-CCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLK-LGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 213 (337)
.. ...+....+.|+ ++|.++....
T Consensus 262 -----g~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 262 -----GS-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred -----CC-HHHHHHHHHHhccCCCEEEEEec
Confidence 11 346778889999 9999987643
No 412
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.72 E-value=25 Score=30.55 Aligned_cols=70 Identities=16% Similarity=0.023 Sum_probs=46.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHH-HHHHHHhhCCCCCeEEEEcCCCCC-----------CCCCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPH-QLAKAKQKEPLKECKIVEGDAEDL-----------PFPTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~d~~~~-----------~~~~~~ 175 (337)
..+.||-.||..|.++..++.++ .|+.|+++--+-+ |-+.+.+ .++.....|+.+. .+++++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----FGLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----hCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 56789999999999888887764 4788888765543 3333322 2345555666432 246778
Q ss_pred ccEEEecc
Q 019684 176 ADRYVSAG 183 (337)
Q Consensus 176 fD~i~~~~ 183 (337)
.|+.+-+.
T Consensus 82 ld~L~NNA 89 (289)
T KOG1209|consen 82 LDLLYNNA 89 (289)
T ss_pred eEEEEcCC
Confidence 88887643
No 413
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.55 E-value=37 Score=33.96 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=55.0
Q ss_pred CEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l 185 (337)
.+|+=+|||. ++..+++.. .+.+++.+|.+++.++.+++ .+...+.+|..+.. ..-++.|.++..
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~--- 488 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLDCARWLLLT--- 488 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCccccCEEEEE---
Confidence 5677777774 333333322 26789999999999988875 35788999997632 122457866542
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEEEE
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~i~ 211 (337)
.+|.. ..+-...+...|.-.++..
T Consensus 489 --~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 489 --IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred --cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 22322 2233344556777776654
No 414
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=75.46 E-value=14 Score=34.01 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----C--CCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L--PFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~--~~~~~~fD~i~~ 181 (337)
++++||-.|+|. |..+..+++.. +. ++++++.+++..+.+++... . .++..+-.+ + ....+.+|+|+.
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~lg~-~--~~~~~~~~~~~~~~~~~~~~~~~d~v~d 238 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHV-GARHVVITDVNEYRLELARKMGA-T--RAVNVAKEDLRDVMAELGMTEGFDVGLE 238 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCC-c--EEecCccccHHHHHHHhcCCCCCCEEEE
Confidence 678888888764 66777777775 45 68888888888877775432 1 111111011 0 012345888875
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... ....+..+.+.|+++|.++....
T Consensus 239 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 239 MSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 221 13467888999999999988754
No 415
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=75.31 E-value=28 Score=32.80 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCe-EEEEc---CC----CCCCCCCCCccE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-KIVEG---DA----EDLPFPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-~~~~~---d~----~~~~~~~~~fD~ 178 (337)
+++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++... ..+ ..... +. .++ .....+|+
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~v~~~-~~g~gvDv 278 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKEMGA-DYVFNPTKMRDCLSGEKVMEV-TKGWGADI 278 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-CEEEcccccccccHHHHHHHh-cCCCCCCE
Confidence 3678888888763 55666667775 45 79999998887777776432 111 11100 11 011 12345898
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+.. ..+....+.++.+.|+++|+++....
T Consensus 279 vld~-----~g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 279 QVEA-----AGAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EEEC-----CCCcHHHHHHHHHHHHcCCEEEEECC
Confidence 8753 22334567888999999999987643
No 416
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.24 E-value=12 Score=34.90 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----C--CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L--PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~--~~~~~~fD~i~ 180 (337)
.++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.+++... . .++..+-.+ + ......+|+++
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~~~g~-~--~vv~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARRFGA-T--HTVNASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHhCC-e--EEeCCCCccHHHHHHHHcCCCCCCEEE
Confidence 367899988875 467777777775 554 9999998888887764321 1 111111111 1 01234589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.... ....+.++.+.|+++|+++...
T Consensus 257 d~~~------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 257 EAVG------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EcCC------ChHHHHHHHHHhhcCCeEEEEe
Confidence 4321 1246788899999999998764
No 417
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=74.61 E-value=5.5 Score=31.59 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=45.1
Q ss_pred CCCEEEEEcCcc-cHHH-HHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGT-GFTT-LGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~-~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+||=+|+|- |... ..++.. +..+++.+.-+.+-.+...+.....++.+... .++.-.-..+|+|+......+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~--~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPL--EDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG--GGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeH--HHHHHHHhhCCeEEEecCCCC
Confidence 679999999973 3333 333333 34569999988776655554443344555443 333211245999998776665
Q ss_pred c
Q 019684 188 W 188 (337)
Q Consensus 188 ~ 188 (337)
.
T Consensus 88 ~ 88 (135)
T PF01488_consen 88 P 88 (135)
T ss_dssp T
T ss_pred c
Confidence 4
No 418
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.57 E-value=14 Score=30.96 Aligned_cols=132 Identities=18% Similarity=0.097 Sum_probs=72.0
Q ss_pred EEEEEcCcc-c-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------------------CCeEEEEcCCCCCC
Q 019684 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAEDLP 170 (337)
Q Consensus 113 ~VLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------~~~~~~~~d~~~~~ 170 (337)
+|.=||+|+ | .++..++.. |.+|+.+|.+++.++.++++... .+++ ...|+++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 356688875 3 344444554 89999999999998887754211 1233 334444321
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh------------hhhhc--------c
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF------------ADVWM--------L 230 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~~--------~ 230 (337)
..|+|+=. +.+.++-.+++++++.+.+.|+-.|.-.+.......+.... ...+. .
T Consensus 78 ----~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~ 152 (180)
T PF02737_consen 78 ----DADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPG 152 (180)
T ss_dssp ----TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred ----hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCC
Confidence 37777632 23333344689999999999998887665443322221111 11100 0
Q ss_pred CC----CHHHHHHHHHhCCCcEEEEE
Q 019684 231 FP----KEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 231 ~~----~~~~~~~~l~~aGF~~v~~~ 252 (337)
-. ..+.+.+++++.|...+.+.
T Consensus 153 ~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 153 PKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 01 24567788899999887764
No 419
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=74.50 E-value=29 Score=27.20 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=55.5
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++..|+|++.+--.. .+....|-.+.+.|..+|.+.+..|-.... ...++.++.+...-+|+......
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~gr~-----------g~V~~~~I~eaA~taGL~~t~~~ 110 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAGRP-----------GHVEPSDIREAAPTAGLVQTKSC 110 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------CCCCHHHHHHHHhhcCCeeeeee
Confidence 345888876433221 245577888889999999999998754321 24578899999999999999999
Q ss_pred EcCcccc
Q 019684 253 RIGPKWY 259 (337)
Q Consensus 253 ~~~~~~~ 259 (337)
.++..|.
T Consensus 111 ~v~~dWs 117 (127)
T PF11253_consen 111 AVGDDWS 117 (127)
T ss_pred ccCCCcc
Confidence 8887763
No 420
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=74.11 E-value=42 Score=30.23 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=52.8
Q ss_pred EEEEEcCcc-c-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-CeEE-EEcC-CCCCCCCCCCccEEEecccccc
Q 019684 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-ECKI-VEGD-AEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 113 ~VLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~-~~~d-~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+|+=||+|. | .++..+++. +.+|+.++.+++.++..++..... .-.. .... ..+.. ..+.+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~-- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA-- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEeccc--
Confidence 578899885 2 344444544 678999998877777666432100 0000 0000 11111 11568988864332
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.+...+++.+...+.++..++..
T Consensus 77 -~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 77 -YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred -ccHHHHHHHHhhhcCCCCEEEEe
Confidence 23467888888888887766654
No 421
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=74.02 E-value=17 Score=32.51 Aligned_cols=87 Identities=22% Similarity=0.168 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++....|+|.-.|.|+-.+.++ +..|++||..+- |........++....|-..........|-.+|.. +
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDm----V 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----AQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDM----V 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchh----hhhhhcccceeeeeccCcccccCCCCCceEEeeh----h
Confidence 37899999999999999999998 899999998542 2223333557777777755433445688888754 3
Q ss_pred CCHHHHHHHHHHhccCC
Q 019684 189 PDPQRGIREAYRVLKLG 205 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkpg 205 (337)
..|.++-.-|...|..|
T Consensus 280 EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 EKPARVAALIAKWLVNG 296 (358)
T ss_pred cCcHHHHHHHHHHHHcc
Confidence 45667777777777644
No 422
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.49 E-value=40 Score=29.46 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=42.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~f 176 (337)
.++++|-.|++.|. .+..+++. +.+|+.++.+...-....-.....++.++..|+.+.. +. -+..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKA--GADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 46889988876653 33334444 7899988765421111111111245778888986532 11 1468
Q ss_pred cEEEecccc
Q 019684 177 DRYVSAGSI 185 (337)
Q Consensus 177 D~i~~~~~l 185 (337)
|+++.+...
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 988876544
No 423
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.34 E-value=36 Score=31.05 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=55.9
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cC-----C-CCCCCCCCCccEEEec
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GD-----A-EDLPFPTDYADRYVSA 182 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d-----~-~~~~~~~~~fD~i~~~ 182 (337)
.+|+=+|+|. |.++..|++. +.+|+.++-+.+.++..++.. ++.... ++ . ...+...+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAG---GLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcC---CeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 5799999995 4566666665 678999999877776665421 111110 00 0 0001122469988753
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
-=-+ +....++.+...+.++..++..
T Consensus 78 vK~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKAY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCHH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 2111 3457888899999999877654
No 424
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.07 E-value=56 Score=28.14 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=43.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC----------CCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF----------PTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~----------~~~~fD 177 (337)
++++||=.|++. .++..+++.+ .+.+|++++.+++.++...+... .++.++..|+.+... ..+..|
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEGARVAITGRDPASLEAARAELG-ESALVIRADAGDVAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC-CceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 356788777654 3333333321 26899999988766655544332 356677788755320 114589
Q ss_pred EEEecccc
Q 019684 178 RYVSAGSI 185 (337)
Q Consensus 178 ~i~~~~~l 185 (337)
+++.....
T Consensus 83 ~vi~~ag~ 90 (249)
T PRK06500 83 AVFINAGV 90 (249)
T ss_pred EEEECCCC
Confidence 88875544
No 425
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.91 E-value=67 Score=32.68 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccc
Q 019684 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (337)
Q Consensus 111 ~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l 185 (337)
..+|+=+|||. |......... .+.+++.+|.+++.++.+++ .+...+.+|..+.. ..-++.|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vvv~--- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAAKAEVLINA--- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE---
Confidence 46788888885 4433333333 26799999999999998875 35678999997643 122457877753
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEEEEc
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 212 (337)
.+|.+ ..+-...+.+.|+-.++...
T Consensus 472 --~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 472 --IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred --eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 33433 23444555667776665543
No 426
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.53 E-value=57 Score=29.61 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=63.0
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
+|-=||+|. ..++..+++. +.+|++.|.+++..+.+.+. ++.. ..+..++.-.....|+|++.- ..-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~----g~~~-~~~~~e~~~~~~~~dvvi~~v--~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE----GATG-ADSLEELVAKLPAPRVVWLMV--PAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC----CCee-cCCHHHHHhhcCCCCEEEEEe--cCCcH
Confidence 466678775 3355566655 78999999999887776542 2221 112221110001247776531 11112
Q ss_pred HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 191 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
...++..+...+++|..++-.....+. +..++.+.+++.|...++.-
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~---------------~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYK---------------DDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChh---------------HHHHHHHHHHHcCCEEEeCC
Confidence 345677888888887544433222211 23456677778887766543
No 427
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=72.44 E-value=55 Score=30.40 Aligned_cols=94 Identities=26% Similarity=0.344 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC------CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~------~~~~~~fD~i~ 180 (337)
.++.+||-.|+| .|..+..+++.. +.+ +++++.++...+.+++... . .++..+-.+. ...+..+|+|+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~-G~~~vi~~~~s~~~~~~~~~~g~-~--~v~~~~~~~~~~~l~~~~~~~~~d~vl 261 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF-GASPIIAVDVRDEKLAKAKELGA-T--HTVNAAKEDAVAAIREITGGRGVDVVV 261 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCC-c--eEecCCcccHHHHHHHHhCCCCCCEEE
Confidence 367888877765 566667777775 455 9999999888887765321 1 1111111111 01234589888
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .... ..+.++.+.|+++|+++...
T Consensus 262 d~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 262 EA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred Ee-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 43 2222 36788899999999998764
No 428
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=72.28 E-value=33 Score=30.65 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCCEEEE--EcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC--CCCC-CCCccEEEecc
Q 019684 109 NRNMLVVD--VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFP-TDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLD--iGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~--~~~~-~~~fD~i~~~~ 183 (337)
++|.+||- ...|.|..+..+++.. +.++++.--+.+-.+.|+++....-+.+...|+.+ ..+. .+..|+++-.-
T Consensus 145 kpGhtVlvhaAAGGVGlll~Ql~ra~-~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsv 223 (336)
T KOG1197|consen 145 KPGHTVLVHAAAGGVGLLLCQLLRAV-GAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSV 223 (336)
T ss_pred CCCCEEEEEeccccHHHHHHHHHHhc-CcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccc
Confidence 57888774 4557888888888875 78899998889999999988665445566556522 1232 34588877432
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ..++.-...|||+|+++-..
T Consensus 224 G~-------dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 224 GK-------DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred cc-------hhhHHHHHHhccCceEEEec
Confidence 22 35677788999999997653
No 429
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.13 E-value=21 Score=32.34 Aligned_cols=90 Identities=21% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
..+|+=+|.|- |.++..+.+......++|.|.+...++.+.+.. +.... .+... ......|+|+..--+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg----v~d~~~~~~~~--~~~~~aD~VivavPi~- 75 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG----VIDELTVAGLA--EAAAEADLVIVAVPIE- 75 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC----cccccccchhh--hhcccCCEEEEeccHH-
Confidence 35788888884 667777777755567899999998888887532 11111 11101 1123479988643332
Q ss_pred cCCHHHHHHHHHHhccCCCEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
.-..+++++...|++|..+.
T Consensus 76 --~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred --HHHHHHHHhcccCCCCCEEE
Confidence 22356666666666665553
No 430
>PRK07576 short chain dehydrogenase; Provisional
Probab=71.99 E-value=40 Score=29.72 Aligned_cols=73 Identities=29% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-----C-----CCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-----F-----PTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~-----~-----~~~~ 175 (337)
++++||-.|. +|..+..+++.+ .+.+|+++|.+++.++...+... ..++.++..|+.+.. + ..+.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4678888886 444444333321 37899999998776654432221 234677888886522 1 0135
Q ss_pred ccEEEecc
Q 019684 176 ADRYVSAG 183 (337)
Q Consensus 176 fD~i~~~~ 183 (337)
.|+++.+.
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79988654
No 431
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=71.61 E-value=22 Score=32.78 Aligned_cols=95 Identities=23% Similarity=0.384 Sum_probs=58.8
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----CC-CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----LP-FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~~-~~~~~fD~i~~~~ 183 (337)
++.+||-.|+| .|..+..+++..+..+|+.++.++...+.+++... . .++..+-.+ +. ...+.+|+++...
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGA--D-VVVNGSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCC--c-EEecCCCccHHHHHHHHhCCCCcEEEECC
Confidence 67889888876 46666777777533378999999888888865321 1 111111001 00 1112588887422
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. . ...+....+.|+++|.++....
T Consensus 252 g-----~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 252 N-----N-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred C-----C-HHHHHHHHHHhhcCCeEEEECC
Confidence 1 1 2468889999999999987643
No 432
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.53 E-value=14 Score=35.09 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=47.2
Q ss_pred CEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEe
Q 019684 112 MLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVS 181 (337)
Q Consensus 112 ~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~ 181 (337)
.+||=||||. |..+.....+....+|+..|-|.+..+.+..... .+++..+.|+.+.+- .-..+|+|++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-GKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-ccceeEEecccChHHHHHHHhcCCEEEE
Confidence 5799999964 4433333233234899999999999988876644 378889999877531 1123698887
No 433
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.35 E-value=8.2 Score=36.57 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 151 (337)
.++++||-|.+|-...+..+.+. ..+|++||+||.++...+
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAG--PKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcC--CceEEEEeCCHHHHHHHH
Confidence 37899999987765555555544 479999999999987776
No 434
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.11 E-value=19 Score=34.52 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=71.8
Q ss_pred CCCCEEEEEcC-cc------cHHHHHHHhhCCCCeEEEEeC-CHHHHHHHHhhCCCCCeEEEEcCCCCCC----------
Q 019684 109 NRNMLVVDVGG-GT------GFTTLGIVKHVDAKNVTILDQ-SPHQLAKAKQKEPLKECKIVEGDAEDLP---------- 170 (337)
Q Consensus 109 ~~~~~VLDiGc-G~------G~~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~d~~~~~---------- 170 (337)
+++..||=+|- |+ |-++.++.++--..-++++|. -|.++++.+..+..-++.|...+-..-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 35677888874 44 455666666422244667785 4778888887776667777766544333
Q ss_pred CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 171 FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+....||+|+.-..=.|.-|. -.-+.++.+.++|.=.|++.+....
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 234669999985544443333 3678899999999999999876443
No 435
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.99 E-value=19 Score=30.53 Aligned_cols=89 Identities=19% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
..+.+||-+|.= +|.+...+... ..+|+.+|+.|.+-...+ ++++|..+ +.+..+.+|+|+-...+.-
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp-----~~v~Fr~~----~~~~~G~~DlivDlTGlGG 111 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP-----NNVKFRNL----LKFIRGEVDLIVDLTGLGG 111 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC-----CCccHhhh----cCCCCCceeEEEeccccCC
Confidence 367899999985 77777777766 689999999988755554 56666654 3455677999998777765
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+.. +..+-+.| +.+++.++..
T Consensus 112 ~~P------e~L~~fnp-~vfiVEdP~g 132 (254)
T COG4017 112 IEP------EFLAKFNP-KVFIVEDPKG 132 (254)
T ss_pred CCH------HHHhccCC-ceEEEECCCC
Confidence 532 23444555 4566666644
No 436
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.96 E-value=25 Score=31.63 Aligned_cols=84 Identities=14% Similarity=0.031 Sum_probs=50.5
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
+|.=||+|. |.++..+.+. +.+|+++|.++..++.+.+... +.....+.+ . -...|+|+..--...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~---~~~~~~~~~---~-~~~aDlVilavp~~~--- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL---VDEASTDLS---L-LKDCDLVILALPIGL--- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC---cccccCCHh---H-hcCCCEEEEcCCHHH---
Confidence 466788875 4566666655 6799999999998888775421 111111111 1 134788886533221
Q ss_pred HHHHHHHHHHhccCCCEE
Q 019684 191 PQRGIREAYRVLKLGGKA 208 (337)
Q Consensus 191 ~~~~l~~~~~~LkpgG~l 208 (337)
..++++++...++|+..+
T Consensus 70 ~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHhCCCCcEE
Confidence 235677888878776444
No 437
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=70.84 E-value=30 Score=30.69 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=78.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC------------CCeEEEEeCCHHHHHHHHh-------------hC----------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD------------AKNVTILDQSPHQLAKAKQ-------------KE---------- 154 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~------------~~~v~gvD~s~~~~~~a~~-------------~~---------- 154 (337)
+.-.|+|+|-|+|.....+-...+ ..+++.++.+|.....+.. ..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 446799999999988776654332 2456777766532221111 00
Q ss_pred ------CCCCeEEEEcCCCC-CCCCCC---CccEEEecccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCchhH
Q 019684 155 ------PLKECKIVEGDAED-LPFPTD---YADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWL 220 (337)
Q Consensus 155 ------~~~~~~~~~~d~~~-~~~~~~---~fD~i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 220 (337)
....+....+|+.+ +|..+. .+|+.+... +.-..|| ..++..+.+..+|||.+.-.
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDg-FsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~--------- 207 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDG-FRPVKNPEMWEDELLNLMARIPYRDPTLATF--------- 207 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCC-ccccCChhhccHHHHHHHHhhcCCCCceech---------
Confidence 01235667788843 443333 688888643 3334455 37999999999999998521
Q ss_pred hhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 221 SRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+.--++.-|+++||++....-.+
T Consensus 208 -----------ssA~~vRr~L~~aGF~v~~r~g~g 231 (252)
T COG4121 208 -----------AAAIAVRRRLEQAGFTVEKRTGRG 231 (252)
T ss_pred -----------HHHHHHHHHHHHcCceeeecCCcc
Confidence 123446788999999988775444
No 438
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=70.82 E-value=36 Score=30.20 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
.++.+||=.|+ +.|..+..+++.. +.+++.++.++ ..+.+++... . .++...-.+. ....+.+|+++..
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~-g~~v~~~~~~~-~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~d~v~~~-- 215 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKAR-GARVIATASAA-NADFLRSLGA--D-EVIDYTKGDFERAAAPGGVDAVLDT-- 215 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEecch-hHHHHHHcCC--C-EEEeCCCCchhhccCCCCceEEEEC--
Confidence 46789998886 3566666666664 78888888766 6666643221 1 1221111111 1223458888743
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
... .....+.+.|+++|.++...
T Consensus 216 ---~~~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 216 ---VGG--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred ---Cch--HHHHHHHHHHhcCcEEEEEc
Confidence 222 26777889999999998764
No 439
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=70.82 E-value=38 Score=35.01 Aligned_cols=137 Identities=12% Similarity=-0.033 Sum_probs=80.2
Q ss_pred CEEEEEcCccc--HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------C------------CCeEEEEcCCCCC
Q 019684 112 MLVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~G--~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~------------~~~~~~~~d~~~~ 169 (337)
.+|.-||+|+= .++..++.. .+.+|+.+|.+++.++.+.++.. . .++++. .|...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK-AGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh
Confidence 57999999862 233333422 27899999999998887764321 0 122222 233221
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh------------hhhc--------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM-------- 229 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------------~~~~-------- 229 (337)
...|+|+=. +.+.+.-..++++++-++++|+..|.-.+...+...+..... ..+.
T Consensus 383 ----~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~ 457 (699)
T TIGR02440 383 ----KDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIP 457 (699)
T ss_pred ----ccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeC
Confidence 347877743 444444456899999999999977765544433222211111 1110
Q ss_pred c-CC---CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 L-FP---KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 ~-~~---~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. .. +.+...+++++.|.+.+.+.+..
T Consensus 458 g~~T~~~~~~~~~~~~~~~gk~pv~v~d~p 487 (699)
T TIGR02440 458 HAGTSEQTIATTVALAKKQGKTPIVVADKA 487 (699)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEcccc
Confidence 0 01 24566788899999999886643
No 440
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=70.56 E-value=10 Score=31.82 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=48.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEEcCCCCCC---------CCCCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLP---------FPTDY 175 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~---------~~~~~ 175 (337)
...|+.+|||--.....+....++.+++-+|. |++++.-++.... .+.+++..|+.+.. +..+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34899999999888888887656788888998 6666555444322 12457889987521 22334
Q ss_pred ccEEEecccccccCC
Q 019684 176 ADRYVSAGSIEYWPD 190 (337)
Q Consensus 176 fD~i~~~~~l~~~~~ 190 (337)
--++++-.++.+++.
T Consensus 158 ptl~i~Egvl~Yl~~ 172 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSP 172 (183)
T ss_dssp EEEEEEESSGGGS-H
T ss_pred CeEEEEcchhhcCCH
Confidence 557777788888864
No 441
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=70.37 E-value=42 Score=30.47 Aligned_cols=117 Identities=10% Similarity=0.003 Sum_probs=63.3
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
+|-=||+|. +.++..+++. +.+|++.|.+++..+...+... .. ..+..++...-...|+|++.--- - .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g~----~~-~~s~~~~~~~~~~~dvIi~~vp~--~-~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDRT----TG-VANLRELSQRLSAPRVVWVMVPH--G-I 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC----cc-cCCHHHHHhhcCCCCEEEEEcCc--h-H
Confidence 466688875 2345555554 7899999999988877765311 11 11221111011235888764211 1 2
Q ss_pred HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 191 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.+.+++++...|++|-.++-.....+ .+..+..+.+++.|..-++.-..
T Consensus 72 ~~~v~~~l~~~l~~g~ivid~st~~~---------------~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVIDGGNSYY---------------KDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCc---------------ccHHHHHHHHHhcCCeEEecCCC
Confidence 35677888888888754432222111 12344455667777665555433
No 442
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=70.19 E-value=31 Score=29.78 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=57.2
Q ss_pred CCCEEEEEcCccc----HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCC-CC-CCCCCCCccEE
Q 019684 110 RNMLVVDVGGGTG----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA-ED-LPFPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G----~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~-~~-~~~~~~~fD~i 179 (337)
+.+.|+++.|+-| .+++..+.+.-+.+++.|-++++.+...++.... +-++|+.++. ++ ++.- ...|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-KGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-cCCCEE
Confidence 5578999966543 3445555555678999998887776666555321 2368888885 33 2322 348888
Q ss_pred EecccccccCCHHHHHHHHHHhc--cCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVL--KLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L--kpgG~l~i~~~ 213 (337)
+...-. .|.. +++.+.+ .|.|-+++...
T Consensus 120 vVDc~~---~d~~---~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 120 VVDCKR---EDFA---ARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred EEeCCc---hhHH---HHHHHHhccCCCceEEEEec
Confidence 854322 2333 3344444 45677766543
No 443
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.10 E-value=87 Score=30.13 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCCEEEEEcCcccHHH--HHHHhhCCCCeEEEEeCCH-HHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTT--LGIVKHVDAKNVTILDQSP-HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~--~~l~~~~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.+++|+=+|+|....+ ..+++. |.+|+++|.+. ..++...+.+...++.++..|..+.. .+.+|+|+.....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEF--LEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhH--hhcCCEEEECCCC
Confidence 4678999998874332 233333 78999999975 33322222222235667777764411 2458988876544
No 444
>PLN02702 L-idonate 5-dehydrogenase
Probab=69.91 E-value=35 Score=31.69 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEE--EcCCCC----CC-CCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIV--EGDAED----LP-FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--~~d~~~----~~-~~~~~fD~i~ 180 (337)
.++.+||=+|+| .|..+..+++..+...++++|.++...+.+++......+.+. ..+..+ +. ...+.+|+|+
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 259 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSF 259 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEE
Confidence 367888888875 466677777775434588999988888877754321111110 011100 00 1123588887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... .. ...+..+.+.|+++|+++....
T Consensus 260 d~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 260 DCV-----GF-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred ECC-----CC-HHHHHHHHHHHhcCCEEEEEcc
Confidence 531 11 2467889999999999887653
No 445
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.56 E-value=20 Score=32.48 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=58.3
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CC-------------CeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LK-------------ECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~-------------~~~~~~~d~~~~ 169 (337)
.+|-=||+|+ +.++..++.. +.+|+..|.+++.++.+.++.. .. +++ ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 4788899984 4455555655 8999999999999988654321 00 111 12333221
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhc-cCCCEEEEEcCCCC
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGPVYP 216 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~ 216 (337)
...|+|+-. +.+...-.+.++.++.+++ +|+..+.-.+...+
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 346877743 3333333457888888888 66666654444333
No 446
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=69.24 E-value=7.2 Score=31.53 Aligned_cols=99 Identities=17% Similarity=0.071 Sum_probs=49.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-CCC---CCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPF---PTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~---~~~~fD~i~~~~~l~ 186 (337)
..-|||+|=|+|..=-.|.+.+|+-+++.+|-.-.....+. .+.-.++.+|+.+ ++. ...+.-+++.-...+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~----P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST----PPEEDLILGDIRETLPALARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-------GGGEEES-HHHHHHHHHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC----CchHheeeccHHHHhHHHHhcCCceEEEEeecCCC
Confidence 46799999999999999999999999999997422111111 0123477788743 332 223344444433333
Q ss_pred ccCCHH----HHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPDPQ----RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~~~----~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+-.... .+-.-+..+|.|||.++-..+
T Consensus 105 ~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 105 DKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp -HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred CcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 221111 233446678899998875443
No 447
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=69.10 E-value=72 Score=30.31 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.9
Q ss_pred EEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh
Q 019684 113 LVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (337)
Q Consensus 113 ~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 152 (337)
+|-=||+| -|.-...+... +.+|+++|.+++.++...+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHc
Confidence 45567777 34333333333 6899999999999988875
No 448
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.00 E-value=35 Score=30.80 Aligned_cols=136 Identities=15% Similarity=0.034 Sum_probs=74.0
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------------------CCeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------~~~~~~~~d~~~~ 169 (337)
.+|.=||+|. +.++..+++. +.+|+.+|.+++.++.+.++... .++++ ..|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH-
Confidence 3577888874 3355555555 78999999999998887643110 01121 122221
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----hccC--------------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----WMLF-------------- 231 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----~~~~-------------- 231 (337)
.-...|+|+..-. ....-...++.++.+.++|+..+...........+....... ..++
T Consensus 78 --~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~ 154 (288)
T PRK09260 78 --AVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIR 154 (288)
T ss_pred --hhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeC
Confidence 1134688875321 111112467788888888877665544333322221111110 0000
Q ss_pred ------CCHHHHHHHHHhCCCcEEEEEEc
Q 019684 232 ------PKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 232 ------~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.+.+....+++..|-..+.+.+.
T Consensus 155 g~~t~~~~~~~~~~~l~~lg~~~v~v~d~ 183 (288)
T PRK09260 155 GLETSDETVQVAKEVAEQMGKETVVVNEF 183 (288)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 12456778889999888877653
No 449
>PLN00203 glutamyl-tRNA reductase
Probab=68.83 E-value=18 Score=35.85 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.+.+|+=||+|. |..........+..+++.++.+++..+...+......+.+ .++.++...-...|+|++...-.+.
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~--~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIY--KPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEe--ecHhhHHHHHhcCCEEEEccCCCCC
Confidence 368999999963 3322222222233479999999877766554432112222 2222222112458999986433332
Q ss_pred CCHHHHHHHHHHhccC-CCEEEEEcCCCC
Q 019684 189 PDPQRGIREAYRVLKL-GGKACIIGPVYP 216 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~ 216 (337)
--....++++...-+. +..+++++...|
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 1123344444322111 233556554433
No 450
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.66 E-value=74 Score=29.10 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
.++.+||=.|+ +.|..+..+++.. ++++++++.+. ..+.+++.. +..+...-... ......+|+|+.
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~-g~~vi~~~~~~-~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 249 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRR-GAIVIAVAGAA-KEEAVRALG----ADTVILRDAPLLADAKALGGEPVDVVAD 249 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCch-hhHHHHhcC----CeEEEeCCCccHHHHHhhCCCCCcEEEe
Confidence 47889999987 4577777777775 67888888654 566665422 12221111110 012345898885
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
... . ..+..+.+.|+++|.++...
T Consensus 250 ~~g-----~--~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 250 VVG-----G--PLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred cCC-----H--HHHHHHHHHhccCCEEEEec
Confidence 322 1 35778899999999998654
No 451
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=68.59 E-value=9.8 Score=33.88 Aligned_cols=78 Identities=22% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhcc
Q 019684 124 TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203 (337)
Q Consensus 124 ~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lk 203 (337)
++..+.+..+..+|+|+|.++..++.|.+..... -...+.+. + ..+|+|+..--+.. ...+++++...++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~---~~~~~~~~--~--~~~DlvvlavP~~~---~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID---EASTDIEA--V--EDADLVVLAVPVSA---IEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS---EEESHHHH--G--GCCSEEEE-S-HHH---HHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee---eccCCHhH--h--cCCCEEEEcCCHHH---HHHHHHHhhhhcC
Confidence 3566777766799999999999999997653211 11111111 1 23799987543332 3457777777777
Q ss_pred CCCEEEEE
Q 019684 204 LGGKACII 211 (337)
Q Consensus 204 pgG~l~i~ 211 (337)
+|..+.=+
T Consensus 71 ~~~iv~Dv 78 (258)
T PF02153_consen 71 PGAIVTDV 78 (258)
T ss_dssp TTSEEEE-
T ss_pred CCcEEEEe
Confidence 77666433
No 452
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=67.67 E-value=25 Score=28.82 Aligned_cols=65 Identities=17% Similarity=-0.027 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCC-CHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 192 QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFP-KEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 192 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
+.+++-+++.|.|||++++.-... ....... . ..+. -...+-..|.++||+...--.+.+-|.++
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D-~eT~~~L-~---~G~pp~~TrLG~~Ll~~GFtwfKdWYfPEG~~EG 131 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVED-RETRRQL-Q---RGVPPAETRLGFSLLKAGFTWFKDWYFPEGGMEG 131 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT--HHHHHHH-H---TT--GGGSHHHHHHHTTT--EEEEEE--TTTSTT
T ss_pred HHHHHHHHHHhhhcCeEEEEEecC-HHHHHHH-H---cCCCcccchhHHHHHhCCcEEEeeeeccCccccC
Confidence 468999999999999998863321 1111111 1 1111 22457779999999988877766555544
No 453
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=67.50 E-value=32 Score=30.72 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=57.9
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
.++.+||-.|| +.|..+..++... +.+++.++.++...+.+++... + ..+..+-.+.. .....+|+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARALGA--D-HVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHcCC--c-eeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 36789999998 3566666666664 6789999999888887764321 1 11111111110 1223588887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.... . ..+..+.+.++++|.++...
T Consensus 214 ~~~g-----~--~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVG-----G--DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECcc-----H--HHHHHHHHhhccCCEEEEEc
Confidence 5322 1 34566788999999988764
No 454
>PRK10458 DNA cytosine methylase; Provisional
Probab=67.09 E-value=25 Score=34.35 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=42.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL 169 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~ 169 (337)
.-+++|+-||.|.+..-+... +.+ |.++|+++.+.+--+.|.. .+....+..|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhC
Confidence 459999999999999998776 444 5679999999888887752 12334455666554
No 455
>PRK09072 short chain dehydrogenase; Provisional
Probab=67.08 E-value=62 Score=28.33 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCC---------CCCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPF---------PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~---------~~~~f 176 (337)
++.+||=.|++.|. ++..++++ +.+|++++.++..++....... ..++.++..|+.+..- ..+..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 45678888876542 33444444 7899999998877665544321 2357788888865320 01457
Q ss_pred cEEEeccccc
Q 019684 177 DRYVSAGSIE 186 (337)
Q Consensus 177 D~i~~~~~l~ 186 (337)
|.++......
T Consensus 82 d~lv~~ag~~ 91 (263)
T PRK09072 82 NVLINNAGVN 91 (263)
T ss_pred CEEEECCCCC
Confidence 9988865543
No 456
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=67.07 E-value=30 Score=31.24 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCc--ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--C-CCC--CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--A-EDL--PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~-~~~--~~~~~~fD~i~~ 181 (337)
.++.+||-.|.+ .|..+..++... +.+++.++.++...+.++.... ...+-..+ . ..+ ....+.+|+++.
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 241 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERAKELGA--DYVIDYRKEDFVREVRELTGKRGVDVVVE 241 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC--CeEEecCChHHHHHHHHHhCCCCCcEEEE
Confidence 367889988875 566666666664 6889999999888777754321 11111111 0 000 012245888886
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
...- ..+.++.+.++++|.++...
T Consensus 242 ~~g~-------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 242 HVGA-------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCcH-------HHHHHHHHHhhcCCEEEEEe
Confidence 4321 35677788999999988764
No 457
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.90 E-value=59 Score=28.52 Aligned_cols=102 Identities=10% Similarity=0.073 Sum_probs=59.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhC--CCCeEEEEeCCH--HHHHHHHhhCCCCCeEEEEcCCCCCC----------CCCC
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHV--DAKNVTILDQSP--HQLAKAKQKEPLKECKIVEGDAEDLP----------FPTD 174 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~--~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~d~~~~~----------~~~~ 174 (337)
.++++|-.|+| ++.++..+++.+ .+.+|+.++.+. +.++...+... .++.++..|+.+.. -..+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 46789999984 455544444432 278999888653 44444433332 24667888886532 0125
Q ss_pred CccEEEecccccc-------cC--CHH--------------HHHHHHHHhccCCCEEEEEc
Q 019684 175 YADRYVSAGSIEY-------WP--DPQ--------------RGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 175 ~fD~i~~~~~l~~-------~~--~~~--------------~~l~~~~~~LkpgG~l~i~~ 212 (337)
..|+++.+..+.. +. +.+ .+.+.+...++++|.++...
T Consensus 85 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 85 GLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred CCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 6899888654421 11 111 24456677778888877654
No 458
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.77 E-value=79 Score=27.74 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=59.1
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhC--CCCeEEEEeCC---HHHHHHHHhhCCCCCeEEEEcCCCCCC-----C-----CC
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHV--DAKNVTILDQS---PHQLAKAKQKEPLKECKIVEGDAEDLP-----F-----PT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~--~~~~v~gvD~s---~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~-----~~ 173 (337)
.++++|-.|+++ +.++..+++.+ .+.+|+.++.+ ++.++...+.....++.++..|+.+.. + .-
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999862 44444444432 27888888653 334444443332345777888986532 0 12
Q ss_pred CCccEEEecccccc-------cC--CHH--------------HHHHHHHHhccCCCEEEEEcC
Q 019684 174 DYADRYVSAGSIEY-------WP--DPQ--------------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~-------~~--~~~--------------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+..|+++.+..+.. +. +.+ .+.+.+...++++|.++....
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS 148 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTY 148 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcc
Confidence 56898887544321 11 111 133456677778898877643
No 459
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.69 E-value=75 Score=28.37 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=61.0
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----C-CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L-PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~-~~~~~~fD~i~~ 181 (337)
.++.+||=.|+ +.|..+..+++.. +.+|+.++.+++..+.+++... +.+..+-.+ + .. .+.+|+++.
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~i~~~-~~~~d~vl~ 214 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLKELGA----DEVVIDDGAIAEQLRAA-PGGFDKVLE 214 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC----cEEEecCccHHHHHHHh-CCCceEEEE
Confidence 46789998885 5678888888875 6889999999888887764321 111111111 0 12 346898874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. .. ..+.++.+.|+++|+++....
T Consensus 215 ~~-----~~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 215 LV-----GT--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred CC-----Ch--HHHHHHHHHhccCCEEEEEcc
Confidence 32 22 367788999999999987643
No 460
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=66.62 E-value=22 Score=32.01 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=45.3
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
...+....+... ..++..|||.=+|+|..+...... +-.++|+|+++.-++.+.++..
T Consensus 208 P~~l~~r~i~~~--s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 208 PLALIERLIRDY--SFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred hHHHHHHHHHhc--CCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHH
Confidence 344444444442 247899999999999999887776 7899999999999999988754
No 461
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.62 E-value=34 Score=27.27 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=40.3
Q ss_pred CCCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|+-+|||. ...+..+.+. +..+++.+|.+++..+...+......+.....|..+. -+..|+|++.-....
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEADLIINTTPVGM 93 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCCEEEeCcCCCC
Confidence 568999999963 1223333332 2367999999987766544332211111122232221 245899998654443
No 462
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.14 E-value=90 Score=27.21 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=58.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------C--CCCCc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------F--PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~--~~~~f 176 (337)
.++++|-.|.++ +.++..+++.+ .+.+|+.++.+....+.+++.. ..++.++..|+.+.. . .-+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 84 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-DEEDLLVECDVASDESIERAFATIKERVGKI 84 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-cCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899888763 33444443332 3789998887644333333322 245678888986532 0 11568
Q ss_pred cEEEeccccccc-------C--CHH--------------HHHHHHHHhccCCCEEEEEc
Q 019684 177 DRYVSAGSIEYW-------P--DPQ--------------RGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 177 D~i~~~~~l~~~-------~--~~~--------------~~l~~~~~~LkpgG~l~i~~ 212 (337)
|+++.+...... . +.+ .+.+.+...++.+|.++...
T Consensus 85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 998886554321 1 111 23455667777788876654
No 463
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=65.80 E-value=40 Score=31.55 Aligned_cols=98 Identities=23% Similarity=0.264 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC--C-----CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--L-----PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~--~-----~~~~~~fD~i~ 180 (337)
.++.+||-.|+| .|..+..+++..+..+++++|.++...+.+++... ..+ |..+ . ....+.+|+++
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~----~~v--~~~~~~~~~~i~~~~~~~~d~v~ 248 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA----IPI--DFSDGDPVEQILGLEPGGVDRAV 248 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----eEe--ccCcccHHHHHHHhhCCCCCEEE
Confidence 367888888886 46677777777533478899999988888775421 111 2111 0 01223588888
Q ss_pred eccccccc-----CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYW-----PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-...-... .+....+.++.+.|+++|.+....
T Consensus 249 d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 249 DCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred ECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 64321110 123356888999999999997654
No 464
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.72 E-value=35 Score=28.71 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=49.7
Q ss_pred EEEEEcCcc-c-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---C-------------CCeEEEEcCCCCCCCCCC
Q 019684 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-------------KECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 113 ~VLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~-------------~~~~~~~~d~~~~~~~~~ 174 (337)
+|-=+|.|- | ..+..+++. |.+|+|+|++++.++...+-.. + .++.+. .|..+. -.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~ 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IK 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HH
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hh
Confidence 566677774 3 234445555 8999999999998887764311 1 122221 122110 12
Q ss_pred CccEEEeccccccc----CC---HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 175 YADRYVSAGSIEYW----PD---PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 175 ~fD~i~~~~~l~~~----~~---~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
..|+++..--...- +| ..++++.+.++|+++-.+++.....+
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 36766653222111 12 35789999999999555555444433
No 465
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=65.55 E-value=38 Score=31.07 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-CCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~i~~~~~l~ 186 (337)
.++.+||=.||| .|..+..+++.. +.+++.++.+++..+.+++... . .++...-.+. ....+.+|+|+....
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~d~v~~~~g-- 241 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALKLGA-D--EFIATKDPEAMKKAAGSLDLIIDTVS-- 241 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCC-c--EEecCcchhhhhhccCCceEEEECCC--
Confidence 367777777774 456666666665 6799999999888888764321 1 1111110010 011345888874221
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. ..+..+.+.|+++|.++....
T Consensus 242 ---~~-~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 242 ---AS-HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred ---Cc-chHHHHHHHhcCCCEEEEEec
Confidence 11 246778899999999987643
No 466
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=65.31 E-value=26 Score=32.00 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--C-CCCC--CCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--A-EDLP--FPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~-~~~~--~~~~~fD~i~~~ 182 (337)
.++.+||=.|+|. |..+..+++..++.++++++-+++..+.+++... . .++..+ . ..+. .....+|+|+..
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~i~~~~~~~~~dvvld~ 242 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGA-D--HVLNASDDVVEEVRELTGGRGADAVIDF 242 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCC-c--EEEcCCccHHHHHHHHhCCCCCCEEEEc
Confidence 3678888888653 4555556666544789999988888877764321 1 111111 0 0010 122358988853
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. . ...+.+..+.|+++|+++...
T Consensus 243 ~g-----~-~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 243 VG-----S-DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 21 1 346788899999999998764
No 467
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=65.13 E-value=53 Score=29.69 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC--CCC-CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--EDL-PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~-~~~~~~fD~i~~~~~ 184 (337)
++.+||=.|+ +.|..+..+++.. +.+++.++.+++..+.+++... ..+ +-..+. +.+ ......+|+|+...
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~~v-~~~~~~~~~~~~~~~~~~~d~vld~~- 221 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKL-GYEVVASTGKADAADYLKKLGA-KEV-IPREELQEESIKPLEKQRWAGAVDPV- 221 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHcCC-CEE-EcchhHHHHHHHhhccCCcCEEEECC-
Confidence 4678988886 4577777777775 6789999999988888865321 111 100110 000 11234588876432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. ..+....+.|+++|+++....
T Consensus 222 ----g~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 ----GG--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ----cH--HHHHHHHHHhhcCCEEEEEee
Confidence 22 357788999999999988753
No 468
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=64.89 E-value=56 Score=26.94 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=59.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC---CC-CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---LP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~---~~-~~~~~fD~i~~~~~l 185 (337)
.+.+|+-|||=+-.....- ...+..+++..|++...-... .+ .|+.-|... +| .-.++||+|++-=-+
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~------~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF 96 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFG------GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF 96 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcC------Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC
Confidence 5689999999875554332 234578899999976553322 12 466666643 22 114689999985444
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-.-.-..++...+.-++|+++++++.+.
T Consensus 97 l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 97 LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 1111123556667777788899988753
No 469
>PRK05854 short chain dehydrogenase; Provisional
Probab=64.62 E-value=52 Score=30.00 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=46.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhh----CCCCCeEEEEcCCCCCC----------CC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVEGDAEDLP----------FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~d~~~~~----------~~ 172 (337)
.++++|=.|++.|. .+..|++. +.+|+.++-+.+..+.+.+. ....++.++..|+.+.. -.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 46788888876653 33334444 78999998887655544332 22235788899986642 11
Q ss_pred CCCccEEEecccc
Q 019684 173 TDYADRYVSAGSI 185 (337)
Q Consensus 173 ~~~fD~i~~~~~l 185 (337)
.+..|+++.+...
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2458998876544
No 470
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.59 E-value=43 Score=30.50 Aligned_cols=91 Identities=19% Similarity=0.025 Sum_probs=51.2
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
..+|.=||+|. +.++..+.+.....+|+++|.+++..+.+++... . .....+..+. -...|+|+..--...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~--~-~~~~~~~~~~---~~~aDvViiavp~~~- 78 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL--G-DRVTTSAAEA---VKGADLVILCVPVGA- 78 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC--C-ceecCCHHHH---hcCCCEEEECCCHHH-
Confidence 35789999886 3344445444112489999999988887764321 0 1111122111 134788886543321
Q ss_pred CCHHHHHHHHHHhccCCCEEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i 210 (337)
...+++++...+++|..++.
T Consensus 79 --~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 79 --SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred --HHHHHHHHHhhCCCCCEEEe
Confidence 23466667777777775544
No 471
>PRK06701 short chain dehydrogenase; Provisional
Probab=64.51 E-value=40 Score=30.33 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHH-HHHHHHhhC--CCCCeEEEEcCCCCCC-----CC-----C
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPH-QLAKAKQKE--PLKECKIVEGDAEDLP-----FP-----T 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~-~~~~a~~~~--~~~~~~~~~~d~~~~~-----~~-----~ 173 (337)
++++||-.|++.|. ++..++++ +.+|+.++.++. ..+...+.. ...++.++.+|+.+.. +. -
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789988875542 33334444 788988877642 222222211 1235778888986532 11 1
Q ss_pred CCccEEEeccccccc----C--CH--------------HHHHHHHHHhccCCCEEEEEcC
Q 019684 174 DYADRYVSAGSIEYW----P--DP--------------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~----~--~~--------------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+..|+++.+...... . +. -.+++.+.+.++++|.+++...
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 357888865443211 1 11 1355666666777888777643
No 472
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=64.36 E-value=67 Score=29.17 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=61.2
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
+|-=||+|. ..++..+.+. +.+|++.|.+++..+.+.+. +.. ...+.++..-.....|+|++. +++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~----g~~-~~~s~~~~~~~~~~advVi~~-----vp~ 69 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL----GIT-ARHSLEELVSKLEAPRTIWVM-----VPA 69 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC----CCe-ecCCHHHHHHhCCCCCEEEEE-----ecC
Confidence 355677764 3355555554 67899999998877666532 221 112222211011125777653 333
Q ss_pred H---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 191 P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 191 ~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
. ..++..+...+++|..++-.....+. +..++.+.+++.|...++.-.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~---------------~~~~~~~~~~~~g~~~vdapV 120 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYK---------------DDLRRAEELAERGIHYVDCGT 120 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCch---------------hHHHHHHHHHHcCCeEEeCCC
Confidence 2 45677777778877655443332221 344566677777765555433
No 473
>PRK07109 short chain dehydrogenase; Provisional
Probab=64.30 E-value=65 Score=29.72 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-C---------CCC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-F---------PTD 174 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~-~---------~~~ 174 (337)
.+++||=.|++.|. .+..+++. +.+|+.++-+++.++...+... ..++.++.+|+.+.. . .-+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888865542 22333444 7899999998876665543321 235778888986532 0 014
Q ss_pred CccEEEecccc
Q 019684 175 YADRYVSAGSI 185 (337)
Q Consensus 175 ~fD~i~~~~~l 185 (337)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68998876544
No 474
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=64.23 E-value=53 Score=31.67 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.+++|+=+|+|. |......++.. +.+|+.+|.++.....+... +..+ .++.+. . ..+|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----G~~v--~~l~ea-l--~~aDVVI~aT----- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----GFRV--MTMEEA-A--ELGDIFVTAT----- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----CCEe--cCHHHH-H--hCCCEEEECC-----
Confidence 689999999985 44444444443 67999999988765444431 2222 122221 1 2589998643
Q ss_pred CCHHHHHH-HHHHhccCCCEEEEEcCC
Q 019684 189 PDPQRGIR-EAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 189 ~~~~~~l~-~~~~~LkpgG~l~i~~~~ 214 (337)
.+. .++. +....+|+|+.++.....
T Consensus 276 G~~-~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 276 GNK-DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred CCH-HHHHHHHHhcCCCCCEEEEcCCC
Confidence 222 3454 788999999999887654
No 475
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=64.13 E-value=1e+02 Score=28.16 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC------CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~------~~~~~~fD~i~ 180 (337)
.++.+||=.|+| .|..+..+++.. +. ++++++.+++..+.+.+... ..+..+-.+. -...+.+|+++
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~-g~~~v~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~l~~~~~~~~~dvvi 240 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVL-GAARVFAVDPVPERLERAAALGA----EPINFEDAEPVERVREATEGRGADVVL 240 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHhCC----eEEecCCcCHHHHHHHHhCCCCCCEEE
Confidence 367888888765 355556666665 54 79999888877777665321 1121111111 01234589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... .. ...+.+..+.|+++|+++....
T Consensus 241 d~~-----~~-~~~~~~~~~~l~~~g~~v~~g~ 267 (344)
T cd08284 241 EAV-----GG-AAALDLAFDLVRPGGVISSVGV 267 (344)
T ss_pred ECC-----CC-HHHHHHHHHhcccCCEEEEECc
Confidence 532 11 2467888999999999887653
No 476
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.11 E-value=94 Score=27.21 Aligned_cols=103 Identities=10% Similarity=-0.041 Sum_probs=57.2
Q ss_pred CCCEEEEEcCccc-HHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCC----------CCCCC
Q 019684 110 RNMLVVDVGGGTG-FTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP----------FPTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G-~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~----------~~~~~ 175 (337)
.++.+|-.|+++| .++..+++.+ .+.+|+.++.++...+...+.... ....++.+|+.+.. -.-+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 4688999998752 4444443332 278898888875433222221111 23456778886532 01146
Q ss_pred ccEEEecccccc-------cC--CH---H-----------HHHHHHHHhccCCCEEEEEc
Q 019684 176 ADRYVSAGSIEY-------WP--DP---Q-----------RGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 176 fD~i~~~~~l~~-------~~--~~---~-----------~~l~~~~~~LkpgG~l~i~~ 212 (337)
.|+++.+..... +. +. + .+.+.+...++.+|.++...
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 899988655432 11 11 1 23456667777788877654
No 477
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.10 E-value=37 Score=31.09 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=57.8
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----CC--CCCCCccEEEec
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----LP--FPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~~--~~~~~fD~i~~~ 182 (337)
++.+||=.||| .|..+..+++..+...+++++.++...+.+++... . .++...-.. +. ..+..+|+++..
T Consensus 168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga-~--~v~~~~~~~~~~~i~~~~~~~~~d~il~~ 244 (345)
T cd08287 168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA-T--DIVAERGEEAVARVRELTGGVGADAVLEC 244 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-c--eEecCCcccHHHHHHHhcCCCCCCEEEEC
Confidence 67777778876 46666777777533358999988877776665322 1 111111000 00 123358888743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. . ....+..+.+.++++|.++....
T Consensus 245 ~-----g-~~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 245 V-----G-TQESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred C-----C-CHHHHHHHHHhhccCCEEEEecc
Confidence 2 1 13578889999999999987653
No 478
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=64.06 E-value=30 Score=31.75 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~-----~~~~~~fD~i~~ 181 (337)
.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++... . .++...- .+. ....+.+|+++.
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~~~~d~vi~ 239 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELARELGA-V--ATVNASEVEDVAAAVRDLTGGGAHVSVD 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHhCC-C--EEEccccchhHHHHHHHHhCCCCCEEEE
Confidence 367888888874 456666667765 7899999999988888865321 1 1211111 111 011125898875
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
... . ...+....+.|+++|.++...
T Consensus 240 ~~g-----~-~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 240 ALG-----I-PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred cCC-----C-HHHHHHHHHHhhcCCEEEEeC
Confidence 321 1 346778899999999988764
No 479
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=63.23 E-value=2.8 Score=34.68 Aligned_cols=96 Identities=25% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC--------------C----
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------------P---- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------------~---- 170 (337)
++.+|+=+|.|. |.-+..++..+ +.+++..|..+..++....... .++..+..+- +
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGA----YFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTT----EESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccC----ceEEEcccccccccccchhhhhHHHHHhH
Confidence 458999999995 77777777776 7899999999988887765432 2222221110 1
Q ss_pred --CC--CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEE
Q 019684 171 --FP--TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 171 --~~--~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 210 (337)
|. -..+|+|+.......-..|.-+-++..+.|+||..++=
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvD 137 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVD 137 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEE
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEE
Confidence 10 03467777665554444555566677777887665543
No 480
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=63.17 E-value=38 Score=30.93 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CC----CCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-ED----LPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~----~~~~~~~fD~i~~~ 182 (337)
.++.+||=.|+| .|..+..+++...+.++++++-+++..+.+++... . .++...- .+ +.-..+.+|.++..
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~-~--~v~~~~~~~~~~~~v~~~~~~~d~vi~~ 237 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGA-D--LTINSKRVEDVAKIIQEKTGGAHAAVVT 237 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCC-c--EEecccccccHHHHHHHhcCCCcEEEEe
Confidence 478899988875 36666667775337899999999999998865321 1 1111100 11 00001236744422
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. . . ...+.++.+.|+++|.++...
T Consensus 238 ~----~-~-~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 238 A----V-A-KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred C----C-C-HHHHHHHHHhccCCCEEEEEe
Confidence 1 1 1 346888999999999998764
No 481
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=63.13 E-value=91 Score=26.84 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHH--HHHHHHhhCCCCCeEEEEcCCCCCC-C---------CCC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPH--QLAKAKQKEPLKECKIVEGDAEDLP-F---------PTD 174 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~d~~~~~-~---------~~~ 174 (337)
.+++||=.|++.|. ++..++++ +.+|++++-++. ..+..++ . ..++.++..|+.+.. . ..+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~r~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEA--GADIVGAGRSEPSETQQQVEA-L-GRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCchHHHHHHHHHh-c-CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46889999986542 33334444 789999987652 1111111 1 235778888986532 0 014
Q ss_pred CccEEEecccc
Q 019684 175 YADRYVSAGSI 185 (337)
Q Consensus 175 ~fD~i~~~~~l 185 (337)
..|.++.+...
T Consensus 80 ~~d~li~~ag~ 90 (248)
T TIGR01832 80 HIDILVNNAGI 90 (248)
T ss_pred CCCEEEECCCC
Confidence 58998876544
No 482
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=62.82 E-value=25 Score=32.02 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCEEEEE--cC-cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEEe
Q 019684 111 NMLVVDV--GG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVS 181 (337)
Q Consensus 111 ~~~VLDi--Gc-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~~ 181 (337)
+.++|=+ |+ +.|..+..+++.. +.++++++.+++..+.+++... . .++..+-.++ . .....+|+++-
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~~d~vid 218 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKKIGA-E--YVLNSSDPDFLEDLKELIAKLNATIFFD 218 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-c--EEEECCCccHHHHHHHHhCCCCCcEEEE
Confidence 3444443 44 3577777777775 6799999999998888876422 1 1221111111 0 12235898884
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
... . .......+.|+++|+++...
T Consensus 219 ~~g-----~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 219 AVG-----G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCC-----c--HHHHHHHHhhCCCCEEEEEE
Confidence 321 2 23455678899999998764
No 483
>PRK06182 short chain dehydrogenase; Validated
Probab=62.52 E-value=69 Score=28.22 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=44.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCccE
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYADR 178 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~fD~ 178 (337)
+++||=.|++. ..+..+++.+ .+.+|++++-+++.++...+ .++.++.+|+.+.. +. .+..|+
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRVDKMEDLAS----LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 46788888644 4444444432 37899999988776654432 34778888986532 11 135899
Q ss_pred EEeccccc
Q 019684 179 YVSAGSIE 186 (337)
Q Consensus 179 i~~~~~l~ 186 (337)
++.+....
T Consensus 78 li~~ag~~ 85 (273)
T PRK06182 78 LVNNAGYG 85 (273)
T ss_pred EEECCCcC
Confidence 99876554
No 484
>PRK06484 short chain dehydrogenase; Validated
Probab=62.39 E-value=96 Score=30.39 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----C-----CCCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----F-----PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~-----~~~~f 176 (337)
.++.+|=.|++.|. .+..++++ +.+|+.++.++..++...+... .++..+..|+.+.. + .-+..
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA--GDRLLIIDRDAEGAKKLAEALG-DEHLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CceeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46788888876652 33444444 7899999998877766655432 34556778886532 1 11468
Q ss_pred cEEEecccccc-cC-----CH---H-----------HHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEY-WP-----DP---Q-----------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~-~~-----~~---~-----------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+++.+..... .. +. + .+.+.+...++.+|.++++..
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS 401 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGS 401 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECc
Confidence 99987654421 11 11 1 235556666677888877643
No 485
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=62.21 E-value=17 Score=31.56 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh--CCCCCeEEEEcCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK--EPLKECKIVEGDA 166 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~d~ 166 (337)
..+.+.+...+... ...-|.+||.|.|..++.+.+. ...++..++.++..+.-.+-. +...+.....+|+
T Consensus 36 ~~lT~KIvK~A~~~-~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~ 107 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNL-TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDV 107 (326)
T ss_pred hHHHHHHHHhcccc-ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhcCCcceEEecccc
Confidence 34556666665544 4578999999999999999876 235667777766544333221 2223455566665
No 486
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=61.58 E-value=1.1e+02 Score=27.21 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=59.4
Q ss_pred CCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+||=.|+ +.|..+..+++.. +.++++++.+++..+.+++... . ..+ .+..+ ..++.+|+++...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~~~-~~~~~--~~~~~~d~vl~~~---- 200 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALA-GAHVVAVVGSPARAEGLRELGA-A--EVV-VGGSE--LSGAPVDLVVDSV---- 200 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-c--EEE-ecccc--ccCCCceEEEECC----
Confidence 4788988887 4677777777775 6799999998888888876321 1 111 11111 1224589888532
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ..+.+..+.|+++|+++...
T Consensus 201 -g~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 201 -GG--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred -Cc--HHHHHHHHHhcCCCEEEEEe
Confidence 12 25788899999999998764
No 487
>PRK07806 short chain dehydrogenase; Provisional
Probab=61.19 E-value=1e+02 Score=26.49 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCH-HHHHHHHhhC--CCCCeEEEEcCCCCCC-----CC-----CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSP-HQLAKAKQKE--PLKECKIVEGDAEDLP-----FP-----TD 174 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~-~~~~~a~~~~--~~~~~~~~~~d~~~~~-----~~-----~~ 174 (337)
.+++||-.|+.. .++..+++.+ .+.+|++++-+. ...+...... ...++.++.+|+.+.. +. -+
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 457899888643 3334343322 367888887653 2222222111 1235678888986532 00 13
Q ss_pred CccEEEecccccccC--C-----------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 175 YADRYVSAGSIEYWP--D-----------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~--~-----------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..|+++.+....... + ...+++.+.+.++.+|.+++...
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 578877654332111 1 12567777777776777776543
No 488
>PRK08177 short chain dehydrogenase; Provisional
Probab=61.11 E-value=85 Score=26.67 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=40.9
Q ss_pred CEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEEE
Q 019684 112 MLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRYV 180 (337)
Q Consensus 112 ~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i~ 180 (337)
++||=.|+..|. ++..+++. +.+|++++.++...+.+.+. .++.+...|+.+.. ...+.+|+|+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER--GWQVTATVRGPQQDTALQAL---PGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeCCCcchHHHHhc---cccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 357767764332 34444444 78999999887655444322 34667778876532 2224689888
Q ss_pred ecccc
Q 019684 181 SAGSI 185 (337)
Q Consensus 181 ~~~~l 185 (337)
.+...
T Consensus 77 ~~ag~ 81 (225)
T PRK08177 77 VNAGI 81 (225)
T ss_pred EcCcc
Confidence 76433
No 489
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=60.69 E-value=95 Score=28.30 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~ 180 (337)
.++.+||=.|+| .|..+..+++.. +.+ +++++.+++..+.+++... . .++..+-.+. . .....+|+|+
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~~s~~~~~~~~~~g~--~-~~~~~~~~~~~~~i~~~~~~~~vd~vl 239 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKAS-GARKVIVSDLNEFRLEFAKKLGA--D-YTIDAAEEDLVEKVRELTDGRGADVVI 239 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC--c-EEecCCccCHHHHHHHHhCCcCCCEEE
Confidence 477888888875 566767777774 667 8889988888877754321 1 1111111110 0 1233489888
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.... . ...+..+.+.|+++|+++...
T Consensus 240 d~~~-----~-~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 240 VATG-----S-PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred ECCC-----C-hHHHHHHHHHhhcCCEEEEEe
Confidence 5322 1 246777889999999998764
No 490
>PRK12742 oxidoreductase; Provisional
Probab=60.44 E-value=1.1e+02 Score=26.12 Aligned_cols=99 Identities=24% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeC-CHHHHHHHHhhCCCCCeEEEEcCCCCCC-----C-CCCCccEE
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQ-SPHQLAKAKQKEPLKECKIVEGDAEDLP-----F-PTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~-~~~~fD~i 179 (337)
++++||=.|++.|. ++..+++. +.+|+.++. +++..+...+. .++.++..|+.+.. . ..+.+|++
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~--G~~v~~~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l 79 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTD--GANVRFTYAGSKDAAERLAQE---TGATAVQTDSADRDAVIDVVRKSGALDIL 79 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCCHHHHHHHHHH---hCCeEEecCCCCHHHHHHHHHHhCCCcEE
Confidence 46789988874432 22333333 678877654 44444433222 23456777875421 1 12458988
Q ss_pred EecccccccCC-----H---H-----------HHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPD-----P---Q-----------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~-----~---~-----------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+.+.......+ + + .+..++.+.++.+|.+++...
T Consensus 80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 132 (237)
T PRK12742 80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS 132 (237)
T ss_pred EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 87654432211 1 1 233566677777888877643
No 491
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.26 E-value=59 Score=27.96 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-----CC-----CCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-----FP-----TDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~-----~~-----~~~ 175 (337)
++++||=.|+ +|.++..+++.+ .+.++++++.+++.++...+... ..++.++.+|+.+.. +. -+.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678887775 444444444332 26889999988776554433221 245788889986532 11 145
Q ss_pred ccEEEecccc
Q 019684 176 ADRYVSAGSI 185 (337)
Q Consensus 176 fD~i~~~~~l 185 (337)
.|+|+.....
T Consensus 85 id~vi~~ag~ 94 (250)
T PRK12939 85 LDGLVNNAGI 94 (250)
T ss_pred CCEEEECCCC
Confidence 8988876543
No 492
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.07 E-value=41 Score=30.75 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCc--ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc---CC-CCCC--CCCCCccEEE
Q 019684 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG---DA-EDLP--FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~---d~-~~~~--~~~~~fD~i~ 180 (337)
.++.+||=.|++ .|..+..+++.. +.+++.++.+++..+.+++... . .++.. |. ..+. ...+.+|+++
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~v~~~~~~~~~~~~~~~~~~~~vd~vl 239 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAKELGA-D--AFVDFKKSDDVEAVKELTGGGGAHAVV 239 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCC-c--EEEcCCCccHHHHHHHHhcCCCCCEEE
Confidence 367899988875 677878888875 6799999999888777754221 1 11111 11 0000 1234589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.... ....+.++.+.++++|+++...
T Consensus 240 ~~~~------~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 240 VTAV------SAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EcCC------chHHHHHHHHHhhcCCEEEEec
Confidence 4221 1246778889999999998764
No 493
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=60.03 E-value=42 Score=28.59 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCEEEEEcCcc-cHHH-HHHHhhCCCCeEEEEeCC
Q 019684 110 RNMLVVDVGGGT-GFTT-LGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~-~~l~~~~~~~~v~gvD~s 143 (337)
...+||=+|||. |... ..|+.. +-.+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 457899999984 5544 444444 44689999987
No 494
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=59.94 E-value=39 Score=31.10 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----CC--CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----LP--FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~~--~~~~~fD~i~~ 181 (337)
.++.+||=.|+| .|..+..+++..+...++++|-++...+.+.+... + .++..+-.+ +. .....+|+++.
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~~~~~~~~vdvvld 249 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGA--D-VVLNPPEVDVVEKIKELTGGYGCDIYIE 249 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCC--c-EEecCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 367777777764 46666777777644568899998888777765422 1 111111011 00 12234898874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ... ...+..+.+.|+++|+++...
T Consensus 250 ~-----~g~-~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 250 A-----TGH-PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred C-----CCC-hHHHHHHHHHhhcCCEEEEEc
Confidence 3 222 235778899999999998764
No 495
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=59.92 E-value=99 Score=27.88 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC----C-CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L-PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~----~-~~~~~~fD~i~~ 181 (337)
.++.+||=.|+ +.|..+..+++.. +.++++++.++...+.+++..... .++..+-.+ + ....+.+|+++.
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~v~~~~~~~~d~vi~ 220 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFD--AAINYKTPDLAEALKEAAPDGIDVYFD 220 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCc--eEEecCChhHHHHHHHhccCCceEEEE
Confidence 36788988884 4677777777775 679999999888888776532211 111111000 0 011245888874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
... ...+....+.|+++|.++...
T Consensus 221 ~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 221 NVG-------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred cch-------HHHHHHHHHhcCCCceEEEEe
Confidence 321 137788899999999988654
No 496
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=59.83 E-value=46 Score=32.03 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|+-+|+|. |..+...+...+..+++.++.++.......+... ...+. .|..+ .-..+|+|++...-
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g---~~~~~~~~~~~---~l~~aDvVI~aT~s 252 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG---GEAIPLDELPE---ALAEADIVISSTGA 252 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---CcEeeHHHHHH---HhccCCEEEECCCC
Confidence 678999999974 4444333333333489999999866543332221 11221 22211 11358999986543
No 497
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=59.62 E-value=44 Score=28.60 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcccHH--HHHHHhhCCCCeEEEEeCCH--HHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFT--TLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~--~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.+.+||=||.|.-.. +..+.+. +++|+.++... +..+.+. ..++.++..+...-.+ ..+|+|++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~----~~~i~~~~~~~~~~dl--~~~~lVi~a--- 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAE----QGGITWLARCFDADIL--EGAFLVIAA--- 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHH----cCCEEEEeCCCCHHHh--CCcEEEEEC---
Confidence 578999999996433 3344454 77888887643 3333332 2468888877653222 247887753
Q ss_pred cccCCHHHHHHHHHHhccCCCEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
++....-..+....+.-|.++
T Consensus 77 ---t~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 77 ---TDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred ---CCCHHHHHHHHHHHHHcCCEE
Confidence 222333344555555556555
No 498
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.61 E-value=79 Score=28.19 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC---CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL---PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~---~~~~~~fD~i~~~~ 183 (337)
.++.+||-.|+ +.|..+..+++.. +.+++.++.+ ...+.+++... + .++...-.+. ....+.+|+|+...
T Consensus 142 ~~g~~vli~g~~g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~d~vi~~~ 216 (319)
T cd08267 142 KPGQRVLINGASGGVGTFAVQIAKAL-GAHVTGVCST-RNAELVRSLGA--D-EVIDYTTEDFVALTAGGEKYDVIFDAV 216 (319)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCH-HHHHHHHHcCC--C-EeecCCCCCcchhccCCCCCcEEEECC
Confidence 47899999997 4677777777775 6789988854 66666644321 1 1111110111 12234589988542
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.- ........ ...|+++|.++...
T Consensus 217 ~~----~~~~~~~~-~~~l~~~g~~i~~g 240 (319)
T cd08267 217 GN----SPFSLYRA-SLALKPGGRYVSVG 240 (319)
T ss_pred Cc----hHHHHHHh-hhccCCCCEEEEec
Confidence 21 11222222 33499999998764
No 499
>PRK06181 short chain dehydrogenase; Provisional
Probab=59.35 E-value=66 Score=28.08 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=42.3
Q ss_pred CEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhC--CCCCeEEEEcCCCCCC-----CC-----CCCcc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE--PLKECKIVEGDAEDLP-----FP-----TDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~-----~~-----~~~fD 177 (337)
.+||-.|+. |..+..+++.+ .+.+|++++.++...+...+.. ...++.++.+|+.+.. +. -+..|
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467766653 44444443321 3689999999876655443321 1235778888886532 00 13579
Q ss_pred EEEecccc
Q 019684 178 RYVSAGSI 185 (337)
Q Consensus 178 ~i~~~~~l 185 (337)
.|+.....
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 88876544
No 500
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=59.32 E-value=97 Score=27.02 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHHH--HHHhhCCCCeEEEE--eCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTL--GIVKHVDAKNVTIL--DQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~--~l~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+||=||+|.-..-. .|.+. +++|+.+ +++++..+.+. ..+++++..+++.-.+ ..+++|++..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~----~~~i~~~~r~~~~~dl--~g~~LViaAT-- 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK----YGNLKLIKGNYDKEFI--KDKHLIVIAT-- 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh----CCCEEEEeCCCChHHh--CCCcEEEECC--
Confidence 67899999999865432 33343 5555555 77788766654 2568888877654222 2367777532
Q ss_pred cccCCHHHHHHHHHHhccCCCEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKA 208 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l 208 (337)
+...+-+.+.+..+.-|.+
T Consensus 94 ----dD~~vN~~I~~~a~~~~~l 112 (223)
T PRK05562 94 ----DDEKLNNKIRKHCDRLYKL 112 (223)
T ss_pred ----CCHHHHHHHHHHHHHcCCe
Confidence 3344445555555543433
Done!