Query 019686
Match_columns 337
No_of_seqs 150 out of 534
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 99.9 7.6E-23 1.7E-27 197.6 15.7 226 78-321 54-285 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.9 5.3E-22 1.1E-26 155.8 7.4 85 79-164 2-90 (90)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.6 3.7E-07 8E-12 70.7 8.3 67 77-143 1-75 (78)
4 smart00595 MADF subfamily of S 98.4 3.4E-07 7.3E-12 72.1 4.1 71 89-164 2-84 (89)
5 PF12776 Myb_DNA-bind_3: Myb/S 98.2 4.9E-06 1.1E-10 66.1 8.1 68 80-147 1-72 (96)
6 PF10545 MADF_DNA_bdg: Alcohol 98.1 2.8E-06 6.1E-11 65.0 3.4 71 89-162 1-83 (85)
7 PF00249 Myb_DNA-binding: Myb- 97.7 7.2E-05 1.6E-09 53.4 5.0 47 79-137 2-48 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.5 0.00013 2.8E-09 53.8 4.1 43 81-137 1-44 (60)
9 smart00717 SANT SANT SWI3, AD 97.4 0.00024 5.3E-09 48.3 4.4 47 79-138 2-48 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.3 0.00041 8.9E-09 46.6 3.9 45 80-137 1-45 (45)
11 PLN03212 Transcription repress 95.2 0.033 7.1E-07 53.6 5.3 49 77-137 24-72 (249)
12 PLN03091 hypothetical protein; 94.1 0.08 1.7E-06 54.7 5.3 50 74-135 10-59 (459)
13 PLN03091 hypothetical protein; 93.6 0.19 4.1E-06 52.0 6.9 56 74-143 63-118 (459)
14 PLN03212 Transcription repress 92.7 0.29 6.4E-06 47.2 6.5 54 74-141 74-127 (249)
15 PF04504 DUF573: Protein of un 85.3 6.5 0.00014 32.6 8.3 66 78-146 4-71 (98)
16 KOG0051 RNA polymerase I termi 85.0 1.4 3E-05 47.4 5.2 67 76-146 434-516 (607)
17 KOG1279 Chromatin remodeling f 84.4 1 2.2E-05 47.5 3.8 49 76-138 251-299 (506)
18 COG5259 RSC8 RSC chromatin rem 82.2 2.2 4.8E-05 44.8 5.1 49 77-139 278-326 (531)
19 cd01812 BAG1_N Ubiquitin-like 77.7 5.5 0.00012 29.6 4.8 65 265-335 3-69 (71)
20 TIGR02894 DNA_bind_RsfA transc 77.6 6.4 0.00014 36.0 6.0 60 76-143 2-62 (161)
21 KOG0048 Transcription factor, 77.4 3.3 7.1E-05 39.0 4.3 49 77-137 8-56 (238)
22 PRK13923 putative spore coat p 77.0 8.3 0.00018 35.5 6.6 61 75-143 2-63 (170)
23 KOG0049 Transcription factor, 63.8 16 0.00035 40.2 6.2 57 73-141 248-304 (939)
24 cd01809 Scythe_N Ubiquitin-lik 63.2 21 0.00045 26.4 5.1 59 271-335 12-70 (72)
25 PF03353 Lin-8: Ras-mediated v 60.3 20 0.00044 34.8 5.8 64 79-142 18-83 (313)
26 cd06398 PB1_Joka2 The PB1 doma 58.2 19 0.0004 29.7 4.4 38 264-301 2-46 (91)
27 cd01789 Alp11_N Ubiquitin-like 58.1 20 0.00043 28.5 4.5 61 272-335 15-79 (84)
28 TIGR01557 myb_SHAQKYF myb-like 47.0 37 0.0008 25.7 4.1 44 77-132 2-49 (57)
29 cd01806 Nedd8 Nebb8-like ubiq 45.0 44 0.00096 24.8 4.4 56 275-336 16-71 (76)
30 KOG0048 Transcription factor, 43.9 70 0.0015 30.1 6.4 57 74-144 58-115 (238)
31 PF00435 Spectrin: Spectrin re 42.9 1.1E+02 0.0023 23.0 6.3 63 82-145 32-94 (105)
32 PF09608 Alph_Pro_TM: Putative 40.8 20 0.00044 34.2 2.3 51 280-330 120-183 (236)
33 TIGR01869 casC_Cse4 CRISPR sys 36.9 26 0.00055 35.3 2.5 36 262-301 22-68 (325)
34 smart00666 PB1 PB1 domain. Pho 33.7 93 0.002 23.7 4.7 45 264-308 3-50 (81)
35 cd05992 PB1 The PB1 domain is 32.8 89 0.0019 23.6 4.4 45 264-308 2-50 (81)
36 cd01808 hPLIC_N Ubiquitin-like 31.7 1.1E+02 0.0025 22.9 4.8 52 279-336 19-70 (71)
37 PF08994 T4_Gp59_C: T4 gene Gp 31.4 1E+02 0.0022 26.4 4.8 56 84-140 45-102 (103)
38 PF14769 CLAMP: Flagellar C1a 31.0 2.9E+02 0.0064 22.5 8.2 66 77-142 8-82 (101)
39 cd01794 DC_UbP_C dendritic cel 30.6 1.1E+02 0.0023 23.5 4.5 64 260-336 6-69 (70)
40 cd01792 ISG15_repeat1 ISG15 ub 30.2 1.4E+02 0.0029 23.2 5.1 52 279-336 22-75 (80)
41 cd01803 Ubiquitin Ubiquitin. U 29.7 1.7E+02 0.0036 21.7 5.4 55 275-336 16-71 (76)
42 cd01791 Ubl5 UBL5 ubiquitin-li 29.2 1.5E+02 0.0032 23.0 5.2 56 275-336 17-72 (73)
43 PHA03092 semaphorin-like prote 29.2 25 0.00055 30.8 0.9 25 276-304 87-111 (134)
44 PF00046 Homeobox: Homeobox do 28.0 2.2E+02 0.0048 20.1 8.3 55 77-142 3-57 (57)
45 PTZ00044 ubiquitin; Provisiona 27.9 1.3E+02 0.0028 22.6 4.5 56 275-336 16-71 (76)
46 cd01813 UBP_N UBP ubiquitin pr 25.2 1.3E+02 0.0028 23.4 4.1 67 265-334 3-71 (74)
47 cd01807 GDX_N ubiquitin-like d 23.9 1.6E+02 0.0035 22.2 4.4 56 275-336 16-71 (74)
48 PF07750 GcrA: GcrA cell cycle 22.7 89 0.0019 28.2 3.2 37 79-128 1-37 (162)
49 PF14920 MTBP_C: MDM2-binding 22.6 2.6E+02 0.0057 27.4 6.4 57 105-168 187-246 (251)
50 PF14560 Ubiquitin_2: Ubiquiti 22.5 1.4E+02 0.003 23.4 3.9 63 271-335 15-81 (87)
51 cd00176 SPEC Spectrin repeats, 22.5 4.7E+02 0.01 22.0 8.0 64 82-145 137-200 (213)
52 cd01769 UBL Ubiquitin-like dom 22.3 2.4E+02 0.0052 20.0 4.9 55 275-336 13-68 (69)
53 KOG0051 RNA polymerase I termi 22.2 1.2E+02 0.0027 33.1 4.6 47 77-138 383-429 (607)
54 PF07999 RHSP: Retrotransposon 22.1 2.4E+02 0.0051 29.5 6.5 136 8-146 167-330 (439)
55 TIGR02870 spore_II_D stage II 20.6 64 0.0014 32.5 2.0 34 260-304 255-288 (338)
56 KOG0049 Transcription factor, 20.5 1.5E+02 0.0033 33.1 4.8 53 74-139 356-408 (939)
57 PF14420 Clr5: Clr5 domain 20.5 1.5E+02 0.0033 21.8 3.5 25 110-134 23-48 (54)
58 KOG4468 Polycomb-group transcr 20.4 2.2E+02 0.0047 31.6 5.9 82 57-148 61-148 (782)
59 PF04619 Adhesin_Dr: Dr-family 20.2 46 0.00099 29.9 0.8 17 316-332 122-138 (139)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.90 E-value=7.6e-23 Score=197.59 Aligned_cols=226 Identities=24% Similarity=0.369 Sum_probs=159.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccCCCC-CCCCCc
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS-GSAKMS 156 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~kGs-g~~kWp 156 (337)
...|+.+||++||.+|++++..|..++.|..+|++||++|.+.||.||+.||+.||+||+++||+.+....+. +...|+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~ 133 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK 133 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence 6999999999999999999999999999999999999999999999999999999999999999999887643 557899
Q ss_pred cHHHHHHHHc-ccccccc-cccc-ccCCC-ccchhhhhcccCCCCCCCCCCCCCccCCCCC-ccccccccCCCCCCcccc
Q 019686 157 YYKEIDEILK-ERSKNAQ-YKAT-SVANS-ANKVDTFMQFSDKGFDDTSISFGPVEATGRP-TLNLERRLDHDGHPLAIT 231 (337)
Q Consensus 157 YFdeMDeILg-~rp~~~~-~ksp-s~s~S-~~ki~s~~~~s~~~~~dts~~fgpve~~gr~-~~n~e~~ld~d~h~l~~~ 231 (337)
||.+||.++. ..+.... ...+ ...++ +..+.+-.+|+....... ..+.-.+..+.+ .++.+-.....+.+.+..
T Consensus 134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 212 (345)
T KOG4282|consen 134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQ-FDGSSLEDSSQPSGLNEDNSNSSSPEPVAGS 212 (345)
T ss_pred HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccc-cCCCcCCCCCcccccCccccccCCCCCCCcc
Confidence 9999999997 2221111 1110 00000 111222133332222222 222223333333 344444444455665544
Q ss_pred hhHHHHhcCCCCCCCCCCCCCCCCCCCcccceEEEEecCcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhh
Q 019686 232 TADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVR 311 (337)
Q Consensus 232 ~a~a~aa~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (337)
.++..+ .+++++++ +..++. +.+.+.++++++|+.+.+++.++..++...+...|++.-.+ .+
T Consensus 213 ~~~~~~----~s~~~~~s-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~ 275 (345)
T KOG4282|consen 213 LSNDTS----SSSSPDDS-ADSEGG-----------KSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEE-KK 275 (345)
T ss_pred hhhccc----cccchhcc-cccccC-----------CCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhc-cc
Confidence 444433 78999999 433332 56788999999999999999999999999999999988776 66
Q ss_pred hcccCCCccc
Q 019686 312 CIDRDMPVGN 321 (337)
Q Consensus 312 ~~~~~~~~~~ 321 (337)
.+.|-++...
T Consensus 276 ~~~~~~~~e~ 285 (345)
T KOG4282|consen 276 EQERMSEEEK 285 (345)
T ss_pred hHhhhhHHHH
Confidence 6666555443
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.86 E-value=5.3e-22 Score=155.79 Aligned_cols=85 Identities=39% Similarity=0.896 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHH--HHHhhcc--cCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 019686 79 ETWVQDETRILIAFRRE--MDGLFNT--SKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK 154 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E--~~~~F~~--skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~kGsg~~k 154 (337)
.+||++||.+||++|.+ ++..|.. ..++..+|+.||+.|+++||.||+.||+.||+||++.|+++++...+.+ ..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~~-~~ 80 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKKSG-SS 80 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS-----S
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC-Cc
Confidence 58999999999999999 5667864 4577789999999999999999999999999999999999999876555 49
Q ss_pred CccHHHHHHH
Q 019686 155 MSYYKEIDEI 164 (337)
Q Consensus 155 WpYFdeMDeI 164 (337)
|+||++||+|
T Consensus 81 w~~f~~md~i 90 (90)
T PF13837_consen 81 WPYFDEMDEI 90 (90)
T ss_dssp ---TT-----
T ss_pred CcCHHHHhcC
Confidence 9999999986
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.55 E-value=3.7e-07 Score=70.74 Aligned_cols=67 Identities=25% Similarity=0.510 Sum_probs=56.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcc-------cCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHh
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNT-------SKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLKEFKKT 143 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~-------skrnk~lWEeIS~kM~ekGy-~RTaeQCr~KWKNLKk~YKKi 143 (337)
|..+||.+|...||++...+...+.+ ...+...|++|+..|...|. .||+.||+.||+||+..=|+.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~ 75 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK 75 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999886555443 12567999999999999877 699999999999999876654
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.38 E-value=3.4e-07 Score=72.08 Aligned_cols=71 Identities=21% Similarity=0.521 Sum_probs=52.4
Q ss_pred HHHHHHHHH-------HhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccC--CC-CC--CCCCc
Q 019686 89 LIAFRREMD-------GLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQD--RG-SG--SAKMS 156 (337)
Q Consensus 89 LI~Lr~E~~-------~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~--kG-sg--~~kWp 156 (337)
||++++..- ..+.....+...|++|+..|.. |..+|+.||+||+..|++..... .+ .| ..+|.
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~~~w~ 76 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKKSKWE 76 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCch
Confidence 677777632 2344444567899999999965 99999999999999999975432 11 22 47899
Q ss_pred cHHHHHHH
Q 019686 157 YYKEIDEI 164 (337)
Q Consensus 157 YFdeMDeI 164 (337)
||++|.=|
T Consensus 77 ~~~~m~FL 84 (89)
T smart00595 77 YFDRLSFL 84 (89)
T ss_pred hhHhhhhH
Confidence 99999744
No 5
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.25 E-value=4.9e-06 Score=66.05 Aligned_cols=68 Identities=24% Similarity=0.455 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHHHHh--h-cccCCchHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhhccC
Q 019686 80 TWVQDETRILIAFRREMDGL--F-NTSKSNKHLWEQISAKMREK-GFDRSPTMCTDKWRNLLKEFKKTKHQD 147 (337)
Q Consensus 80 ~WT~eETklLI~Lr~E~~~~--F-~~skrnk~lWEeIS~kM~ek-Gy~RTaeQCr~KWKNLKk~YKKiKd~~ 147 (337)
+||++.+..||++..+.... . .++.-++..|+.|+..|.+. |...+..||++||+.||+.|+.++.-.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~ 72 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELR 72 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999885332 2 24457889999999999975 788999999999999999999988654
No 6
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.08 E-value=2.8e-06 Score=65.00 Aligned_cols=71 Identities=20% Similarity=0.495 Sum_probs=51.5
Q ss_pred HHHHHHHHH-------HhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccCC----C-CCCCCCc
Q 019686 89 LIAFRREMD-------GLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDR----G-SGSAKMS 156 (337)
Q Consensus 89 LI~Lr~E~~-------~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~k----G-sg~~kWp 156 (337)
||++++... ..|.+...+...|++|+..| |...+..+|+.+|++|+..|++.+.... + .-..+|.
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~~~~~ 77 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYVPTWS 77 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccH
Confidence 466666532 23333346779999999998 5567799999999999999999876543 1 2236799
Q ss_pred cHHHHH
Q 019686 157 YYKEID 162 (337)
Q Consensus 157 YFdeMD 162 (337)
||+.|.
T Consensus 78 ~~~~l~ 83 (85)
T PF10545_consen 78 YYEELS 83 (85)
T ss_pred HHHHCc
Confidence 999874
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.70 E-value=7.2e-05 Score=53.39 Aligned_cols=47 Identities=23% Similarity=0.555 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
..||.+|...|+++...+-.. -|..||..|. -.||+.||+.+|.+++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---------~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---------NWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---------HHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc---------HHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 479999999999998864222 7999999986 5699999999999874
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.51 E-value=0.00013 Score=53.83 Aligned_cols=43 Identities=28% Similarity=0.871 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 019686 81 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRN-LL 137 (337)
Q Consensus 81 WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKN-LK 137 (337)
||.+|...|+.++..+.. -|..||..|. .||+.||+.||.+ |.
T Consensus 1 WT~eEd~~L~~~~~~~g~----------~W~~Ia~~l~----~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN----------DWKKIAEHLG----NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-----------HHHHHHHST----TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc----------CHHHHHHHHC----cCCHHHHHHHHHHHCc
Confidence 999999999999987521 4999999973 7999999999999 53
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.42 E-value=0.00024 Score=48.26 Aligned_cols=47 Identities=30% Similarity=0.796 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
..||.+|...|+.+...+-. ..|..|+..|. .||+.+|+.+|.++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 57999999999999886532 45999999985 7999999999998864
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.25 E-value=0.00041 Score=46.58 Aligned_cols=45 Identities=31% Similarity=0.855 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 80 TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 80 ~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
.||.+|...|+.+...+-. ..|..|++.|.. ||+.||+.+|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~~----rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELPG----RTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcCC----CCHHHHHHHHHHhC
Confidence 5999999999999886522 459999999853 99999999999873
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.19 E-value=0.033 Score=53.60 Aligned_cols=49 Identities=24% Similarity=0.637 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
+...||.+|-..|+++...+- ..-|..||.+| |..||+.||+.+|.|..
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG---------~~nW~~IAk~~---g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEG---------EGRWRSLPKRA---GLLRCGKSCRLRWMNYL 72 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhC---------cccHHHHHHhh---hcCCCcchHHHHHHHhh
Confidence 456899999999998776541 12499999775 46799999999999776
No 12
>PLN03091 hypothetical protein; Provisional
Probab=94.08 E-value=0.08 Score=54.69 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=39.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRN 135 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKN 135 (337)
.+-|...||.+|-..|+++...+- ..-|..|+..| |..|+++||+.+|.|
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG---------~~nWs~IAk~~---g~gRT~KQCRERW~N 59 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYG---------HGCWSSVPKQA---GLQRCGKSCRLRWIN 59 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhC---------cCCHHHHhhhh---ccCcCcchHhHHHHh
Confidence 345667899999999998876431 13599999764 567999999999996
No 13
>PLN03091 hypothetical protein; Provisional
Probab=93.56 E-value=0.19 Score=52.03 Aligned_cols=56 Identities=23% Similarity=0.483 Sum_probs=45.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKT 143 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKi 143 (337)
|.-....||.+|-..||+++..+ ..-|..||..|. .||..||+++|..+.+++.+.
T Consensus 63 P~IkKgpWT~EED~lLLeL~k~~----------GnKWskIAk~LP----GRTDnqIKNRWnslLKKklr~ 118 (459)
T PLN03091 63 PDLKRGTFSQQEENLIIELHAVL----------GNRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLRQ 118 (459)
T ss_pred CcccCCCCCHHHHHHHHHHHHHh----------CcchHHHHHhcC----CCCHHHHHHHHHHHHHHHHHH
Confidence 44456799999999999988752 135999999883 699999999999988876553
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=92.74 E-value=0.29 Score=47.20 Aligned_cols=54 Identities=17% Similarity=0.419 Sum_probs=43.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK 141 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YK 141 (337)
|.-....||.+|-..||+++.. +. .-|..||..|. .||..||+++|.++.+...
T Consensus 74 P~I~kgpWT~EED~lLlel~~~----~G------nKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 74 PSVKRGGITSDEEDLILRLHRL----LG------NRWSLIAGRIP----GRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred hhcccCCCChHHHHHHHHHHHh----cc------ccHHHHHhhcC----CCCHHHHHHHHHHHHhHHH
Confidence 5556789999999999988654 21 34999999884 5999999999999887643
No 15
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=85.34 E-value=6.5 Score=32.61 Aligned_cols=66 Identities=15% Similarity=0.323 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccC--CchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSK--SNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQ 146 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~sk--rnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~ 146 (337)
...||++.=..||+..-++...-.... --..+++.|...| .++.|..|..+|.+.||+.|......
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l---~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSL---SFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 356999877778777776533322111 2235566665554 47789999999999999999998655
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=85.00 E-value=1.4 Score=47.37 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---hhc---------ccC----CchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 76 KRAETWVQDETRILIAFRREMDG---LFN---------TSK----SNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~---~F~---------~sk----rnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
.....||.+|...||++..++.. +++ ... ...--|-.|++.|. .|+..||+.||..|...
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~----TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG----TRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc----CCCcchHHHHHHHHHhh
Confidence 46679999999999999987533 231 001 12345999998544 69999999999999988
Q ss_pred HHHhhcc
Q 019686 140 FKKTKHQ 146 (337)
Q Consensus 140 YKKiKd~ 146 (337)
+-..+.+
T Consensus 510 ~s~n~~~ 516 (607)
T KOG0051|consen 510 PSFNKRQ 516 (607)
T ss_pred HHhhccc
Confidence 7665544
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=84.41 E-value=1 Score=47.52 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
.-...||++||.+||+.-..+ ...|.+|+.+.. .+|..||-.||-.|=.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y----------~ddW~kVa~hVg----~ks~eqCI~kFL~LPi 299 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMY----------GDDWNKVADHVG----TKSQEQCILKFLRLPI 299 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHh----------cccHHHHHhccC----CCCHHHHHHHHHhcCc
Confidence 345799999999999876532 357999998876 7999999999998864
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=82.21 E-value=2.2 Score=44.78 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
+..+|+.+|+.+||+-...+ ..-|.+||.+.. .+|.+||--||=+|-..
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVg----tKt~EqCIl~FL~LPie 326 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVG----TKTKEQCILHFLQLPIE 326 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhC----CCCHHHHHHHHHcCCcc
Confidence 66799999999998866542 357999998875 79999999999998754
No 19
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=77.73 E-value=5.5 Score=29.55 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=45.9
Q ss_pred EEEecCcceee--ecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 265 ISVKCGDYTRR--IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
|+|||+.-+.- +.-+-|-..+|+.|...+|+-..|--++-. . +.|+.+.+|+.|- +.+|-+|.|.
T Consensus 3 i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g---~~l~d~~~L~~~~--i~~g~~l~v~ 69 (71)
T cd01812 3 VRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK-G---KERDDAETLDMSG--VKDGSKVMLL 69 (71)
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC-C---cccCccCcHHHcC--CCCCCEEEEe
Confidence 67888765544 444568899999999999997766433333 3 3456688999885 4678888763
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.60 E-value=6.4 Score=35.97 Aligned_cols=60 Identities=15% Similarity=0.480 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHHh
Q 019686 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL-KEFKKT 143 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK-k~YKKi 143 (337)
.|-..||.++-.+|-++--. ..+.+...-..+++|..+| +||+.-|.-+|++.. ++|...
T Consensus 2 ~RQDAWT~eeDlLLAEtVLr---hIReG~TQL~AFeEvg~~L-----~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLR---HIREGSTQLSAFEEVGRAL-----NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHH-----cccHHHhcchHHHHHHHHHHHH
Confidence 46788999999988776554 3344555667899999997 499999999999977 468876
No 21
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=77.45 E-value=3.3 Score=38.97 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
....||.+|=..|+++...+-.. -|..|++. .|..|+.++|+.+|-|=.
T Consensus 8 ~kGpWt~EED~~L~~~V~~~G~~---------~W~~i~k~---~gl~R~GKSCRlRW~NyL 56 (238)
T KOG0048|consen 8 VKGPWTQEEDLTQIRSIKSFGKH---------NGTALPKL---AGLRRCGKSCRLRWTNYL 56 (238)
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---------Ccchhhhh---cCCCccchHHHHHhhccc
Confidence 35799999999999887753221 68888765 456899999999998743
No 22
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=76.96 E-value=8.3 Score=35.47 Aligned_cols=61 Identities=16% Similarity=0.517 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHHh
Q 019686 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL-KEFKKT 143 (337)
Q Consensus 75 ~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK-k~YKKi 143 (337)
+.|...||.++-.+|-.+.-+ ..+.+...-..++++...|. ||+.+|..+|+... ++|...
T Consensus 2 k~rqdawt~e~d~llae~vl~---~i~eg~tql~afe~~g~~L~-----rt~aac~fRwNs~vrk~Yee~ 63 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLR---HIREGGTQLKAFEEVGDALK-----RTAAACGFRWNSVVRKQYQEQ 63 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHh-----hhHHHHHhHHHHHHHHHHHHH
Confidence 457789999999998666655 33445566788999998885 79999999996554 457663
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=63.79 E-value=16 Score=40.18 Aligned_cols=57 Identities=25% Similarity=0.477 Sum_probs=44.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK 141 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YK 141 (337)
.|+-+...|+.+|...|+++=.- .+..-|+.||.. +|-+|+.-||-.||+.-.+.-+
T Consensus 248 ~P~~nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~~---Lgt~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 248 NPKWNKEHWSNEEVEKLKALAEA---------PKFVSWPMIALN---LGTNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred CCccchhccChHHHHHHHHHHhc---------cccccHHHHHHH---hCCCcchHHHHHHHHHHHHHHH
Confidence 47788899999999988887542 234569999965 4778999999999987665433
No 24
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=63.24 E-value=21 Score=26.36 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=42.8
Q ss_pred cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 271 DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
.++-++.-+-|...+|+.|...+|+-..+-=++-+ . +.|+-+.+|..| ++.+|-+|+|.
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g---~~L~d~~~L~~~--~i~~~~~l~l~ 70 (72)
T cd01809 12 THTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS-G---RVLKDDETLSEY--KVEDGHTIHLV 70 (72)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC-C---EECCCcCcHHHC--CCCCCCEEEEE
Confidence 45566677789999999999999886554322223 2 357778899998 57788888875
No 25
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=60.26 E-value=20 Score=34.84 Aligned_cols=64 Identities=11% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh-cccCCchHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLF-NTSKSNKHLWEQISAKMRE-KGFDRSPTMCTDKWRNLLKEFKK 142 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F-~~skrnk~lWEeIS~kM~e-kGy~RTaeQCr~KWKNLKk~YKK 142 (337)
..|...-.+++|.+.++.-... ..++.....|+.|+-.+-. -|...+...++.=|++.|...++
T Consensus 18 ~~~~~~~kk~il~~i~~~p~lw~~~~~~~~~~~~~v~v~vy~Rtg~~~~~~~i~~~~~~aK~~Lr~ 83 (313)
T PF03353_consen 18 AKKDVELKKVILSEIEKFPELWKKKSRVPNEEWEEVAVEVYKRTGKLVSVKHIRSIFKNAKDSLRR 83 (313)
T ss_pred chhhHHHHHHHHHHHhcChHhhhccCCccHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Confidence 3444445555566666532222 4455678899999998865 49999999999999999988665
No 26
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=58.21 E-value=19 Score=29.68 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=32.9
Q ss_pred EEEEecCcceeeeccc-------CCHHHHHHHHHHhhccccccee
Q 019686 264 VISVKCGDYTRRIGID-------GTPDAIKEAIKSAFGIRTKRAF 301 (337)
Q Consensus 264 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 301 (337)
||-|+||+-+|||.++ .+.+..++=|+..|.|-..-.|
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~ 46 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADL 46 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcE
Confidence 7899999999999998 5899999999999999653343
No 27
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=58.11 E-value=20 Score=28.51 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=45.0
Q ss_pred ceeeecccCCHHHHHHHHHHhhcc--cccceeeccccch-hhhhc-ccCCCccceEEeccCCceEEEe
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGI--RTKRAFWLEDEDQ-IVRCI-DRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
.+||+.-+-|-..+|+-|...||+ .+-|= .|.|.++ .|-.| |-+.+||.|- +.+|.+|+|-
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL-~l~~~~~~~~~~l~~d~~~L~~y~--~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL-QLFDGDDKLVSKLDDDDALLGSYP--VDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE-EEEcCCCCeEeecCCCccEeeecc--CCCCCEEEEE
Confidence 568999999999999999999997 33332 3344443 33335 6678899995 7899999974
No 28
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=46.99 E-value=37 Score=25.66 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHH---HHHHHHHHHcCCCC-CHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLW---EQISAKMREKGFDR-SPTMCTDK 132 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lW---EeIS~kM~ekGy~R-TaeQCr~K 132 (337)
....||.+|-..+|.....+ .. .-| +.|++.|. ..+ |..||+.-
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~----G~-----g~~a~pk~I~~~~~---~~~lT~~qV~SH 49 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKL----GG-----PDWATPKRILELMV---VDGLTRDQVASH 49 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHh----CC-----CcccchHHHHHHcC---CCCCCHHHHHHH
Confidence 46789999999999988753 11 126 77776654 355 99999864
No 29
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=45.05 E-value=44 Score=24.81 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=41.3
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+|.-+-|-..+|+.|...+++=..+-=++-+ . +.|+-|.+|..| ++.+|-+|++.+
T Consensus 16 ~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~-g---~~L~d~~tl~~~--~i~~g~~i~l~~ 71 (76)
T cd01806 16 DIEPTDKVERIKERVEEKEGIPPQQQRLIYS-G---KQMNDDKTAADY--KLEGGSVLHLVL 71 (76)
T ss_pred EECCCCCHHHHHHHHhHhhCCChhhEEEEEC-C---eEccCCCCHHHc--CCCCCCEEEEEE
Confidence 4666789999999999999876665333322 1 346778999998 678888888764
No 30
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=43.92 E-value=70 Score=30.07 Aligned_cols=57 Identities=16% Similarity=0.431 Sum_probs=42.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHhh
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL-LKEFKKTK 144 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNL-Kk~YKKiK 144 (337)
|.=+...||.+|..++|++...+-++ |..||..|- -||....++=|..- |+++++..
T Consensus 58 P~ikrg~fT~eEe~~Ii~lH~~~GNr----------Ws~IA~~LP----GRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 58 PDLKRGNFSDEEEDLIIKLHALLGNR----------WSLIAGRLP----GRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCcH----------HHHHHhhCC----CcCHHHHHHHHHHHHHHHHHHcC
Confidence 55567899999999999998753222 999999975 38888888878643 55565543
No 31
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=42.91 E-value=1.1e+02 Score=22.97 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhc
Q 019686 82 VQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (337)
Q Consensus 82 T~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd 145 (337)
+.+++..++.-...+...+......-..=...+..|...+ .-....++.+..+|..+|..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALCE 94 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888877777665544455557777885555 56778999999999998888754
No 32
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=40.82 E-value=20 Score=34.24 Aligned_cols=51 Identities=18% Similarity=0.470 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHhhcccccceeeccccchhhh----------hcccCCCccceEEe---ccCCc
Q 019686 280 GTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVR----------CIDRDMPVGNYTLH---LDEGK 330 (337)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~~ 330 (337)
..++...+-..+..+||.+...|.+++.+|-- .|--+||.|+|+.+ +.+|-
T Consensus 120 ~~~~~~~~f~~alirlk~~~gLY~~~~~~V~~~~~~lFra~i~LPanvp~G~Y~v~v~l~rdG~ 183 (236)
T PF09608_consen 120 SDPDEQDDFREALIRLKERAGLYQENEGGVQFLEGTLFRARIPLPANVPPGDYTVRVYLFRDGQ 183 (236)
T ss_pred CChhhHHHHHHHHHHHHHhCCCceecCCeEEEcCCCeEEEEeEcCCCCCcceEEEEEEEEECCE
Confidence 45666667778889999999999999987752 25568999999876 35554
No 33
>TIGR01869 casC_Cse4 CRISPR system CASCADE complex protein CasC/Cse4. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.
Probab=36.94 E-value=26 Score=35.28 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=27.8
Q ss_pred ceEEEEecCccee-eecccCCHHHHHHHHHHhh----------ccccccee
Q 019686 262 GKVISVKCGDYTR-RIGIDGTPDAIKEAIKSAF----------GIRTKRAF 301 (337)
Q Consensus 262 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 301 (337)
|.--++.||.++| || |..++|.|||.+| |+||||.+
T Consensus 22 G~PKta~~GG~~R~RV----SSQs~KRa~R~~~~~~~~~~~~~g~RTr~l~ 68 (325)
T TIGR01869 22 GAPKTAVYGGSTRTRV----SSQCLKRAWRLSAHDHEALAGHGGIRSRRLA 68 (325)
T ss_pred CCCceeeECCEeecee----cHHHHHHHHHHhhhhhhhcCccccccHHHHH
Confidence 5556677777766 44 8999999999876 68999875
No 34
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=33.71 E-value=93 Score=23.68 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=32.7
Q ss_pred EEEEecCcceeeecccC--CHHHHHHHHHHhhccc-ccceeeccccch
Q 019686 264 VISVKCGDYTRRIGIDG--TPDAIKEAIKSAFGIR-TKRAFWLEDEDQ 308 (337)
Q Consensus 264 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 308 (337)
.+.|.||+.+||+-+.. |-+.+...|...|++- ..=.+.-.|||+
T Consensus 3 ~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg 50 (81)
T smart00666 3 DVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG 50 (81)
T ss_pred cEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC
Confidence 35678899999998864 7799999999999985 122333346654
No 35
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=32.78 E-value=89 Score=23.59 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=34.0
Q ss_pred EEEEecCcceeeeccc---CCHHHHHHHHHHhhccc-ccceeeccccch
Q 019686 264 VISVKCGDYTRRIGID---GTPDAIKEAIKSAFGIR-TKRAFWLEDEDQ 308 (337)
Q Consensus 264 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 308 (337)
++.|.|++-++||=+. -|-+.+++.|...|++= +.=.+...||++
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~ 50 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDG 50 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCC
Confidence 4678898888888876 67899999999999984 333555556553
No 36
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=31.71 E-value=1.1e+02 Score=22.87 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 279 DGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+-|-..+|+.|...+++- .-.+||.-... .|+.|.+|..| ++.+|-+|+|++
T Consensus 19 ~~TV~~lK~~I~~~~~i~-~~~~~Li~~Gk---~L~d~~tL~~~--~i~~~stl~l~~ 70 (71)
T cd01808 19 DASVKDFKEAVSKKFKAN-QEQLVLIFAGK---ILKDTDTLTQH--NIKDGLTVHLVI 70 (71)
T ss_pred CChHHHHHHHHHHHhCCC-HHHEEEEECCe---EcCCCCcHHHc--CCCCCCEEEEEE
Confidence 357789999999999863 34467755443 46778899998 678999999875
No 37
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=31.39 E-value=1e+02 Score=26.44 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHH-cC-CCCCHHHHHHHHHHHHHHH
Q 019686 84 DETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRE-KG-FDRSPTMCTDKWRNLLKEF 140 (337)
Q Consensus 84 eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~e-kG-y~RTaeQCr~KWKNLKk~Y 140 (337)
=||.++++-.-..-..|.. .....+|+.++.++.. +- ...+.++++..+....+++
T Consensus 45 ~ET~vilds~Lg~v~~~Dk-~~~D~iW~~~s~kl~kYr~fl~Id~~kyk~~~~eti~~~ 102 (103)
T PF08994_consen 45 LETFVILDSFLGFVDKFDK-VLTDPIWKNYSTKLKKYRPFLKIDCEKYKKLFIETIKSC 102 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHH-H---HHHHHHHHHHHHHHHHEEE-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhHHhhhh-hccchhHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhc
Confidence 4899999888877777765 5678999999988875 11 1246666666666555443
No 38
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=31.00 E-value=2.9e+02 Score=22.50 Aligned_cols=66 Identities=6% Similarity=0.081 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hhcccCCchHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDG-LFNTSKSNKHLWEQISAKMREKGFD--------RSPTMCTDKWRNLLKEFKK 142 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~-~F~~skrnk~lWEeIS~kM~ekGy~--------RTaeQCr~KWKNLKk~YKK 142 (337)
+....+.++|.+++.+-.+... .+.....-.+.++...+.|...+.. .+..||+.=.+-+...|-+
T Consensus 8 ~~~~fs~~q~s~~~~i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~sv~rpp~~~~iFs~~~~~~i~~y~~~t~fr 82 (101)
T PF14769_consen 8 KEQGFSWEQTSAFLSILKELLEKNIEKGMSLEDSFKYFKELLLRHSVQRPPFSIGIFSVDQVKAIIDYFHNTYFR 82 (101)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhccCCCCcccCcCCHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999665 5554446778899999999999888 7899999888888877543
No 39
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=30.63 E-value=1.1e+02 Score=23.50 Aligned_cols=64 Identities=9% Similarity=0.116 Sum_probs=43.9
Q ss_pred ccceEEEEecCcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 260 FGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
..|+.+.+...+ +-|-..||+.|.+.+|+-...- .|--. =+.|+-|..|+.|-+ .+|.+|+|++
T Consensus 6 ~~G~~~~l~v~~-------~~TV~~lK~~I~~~~gi~~~~q-~Li~~---G~~L~D~~~l~~~~i--~~~~tv~~~~ 69 (70)
T cd01794 6 STGKDVKLSVSS-------KDTVGQLKKQLQAAEGVDPCCQ-RWFFS---GKLLTDKTRLQETKI--QKDYVVQVIV 69 (70)
T ss_pred CCCCEEEEEECC-------cChHHHHHHHHHHHhCCCHHHe-EEEEC---CeECCCCCCHHHcCC--CCCCEEEEEe
Confidence 456666665544 3478899999999988755432 22111 135888899999864 4899999985
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=30.17 E-value=1.4e+02 Score=23.17 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHhhcccccceeec--cccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 279 DGTPDAIKEAIKSAFGIRTKRAFWL--EDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+-|-..+|+.|...+++-.. .+|| ...- +.|+-+-+|..| .+.+|-+|.|.+
T Consensus 22 ~~TV~~lK~~I~~~~~i~~~-~qrL~~~~~G---~~L~D~~tL~~~--gi~~gs~l~l~~ 75 (80)
T cd01792 22 SMTVSELKQQIAQKIGVPAF-QQRLAHLDSR---EVLQDGVPLVSQ--GLGPGSTVLLVV 75 (80)
T ss_pred CCcHHHHHHHHHHHhCCCHH-HEEEEeccCC---CCCCCCCCHHHc--CCCCCCEEEEEE
Confidence 45889999999999998443 3566 4332 246667789888 678898888764
No 41
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=29.69 E-value=1.7e+02 Score=21.67 Aligned_cols=55 Identities=15% Similarity=0.344 Sum_probs=38.2
Q ss_pred eecccCCHHHHHHHHHHhhcccccc-eeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKR-AFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.+.-+-|...||+.|...+++-..+ .+|.. . +.|+-+.+|+.| ++.+|-+|++.+
T Consensus 16 ~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~--g---~~L~d~~~L~~~--~i~~~~~i~l~~ 71 (76)
T cd01803 16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--G---KQLEDGRTLSDY--NIQKESTLHLVL 71 (76)
T ss_pred EECCcCcHHHHHHHHHHHhCCCHHHeEEEEC--C---EECCCCCcHHHc--CCCCCCEEEEEE
Confidence 3445678999999999999875433 22322 1 236778899887 567888888764
No 42
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=29.22 E-value=1.5e+02 Score=23.03 Aligned_cols=56 Identities=18% Similarity=0.380 Sum_probs=42.2
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.+.=|-|-..+|+.|...+++-..|-=..-. + +-|+-|-.|..|- +.+|-+|+|.+
T Consensus 17 ~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~--G--k~L~D~~tL~~yg--i~~~stv~l~~ 72 (73)
T cd01791 17 KCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW--Y--TIFKDHISLGDYE--IHDGMNLELYY 72 (73)
T ss_pred EeCCCCcHHHHHHHHHHHhCCChHHEEEEeC--C--cCCCCCCCHHHcC--CCCCCEEEEEe
Confidence 4555789999999999999877766533322 2 3477788899984 78999999875
No 43
>PHA03092 semaphorin-like protein; Provisional
Probab=29.21 E-value=25 Score=30.81 Aligned_cols=25 Identities=36% Similarity=0.731 Sum_probs=19.8
Q ss_pred ecccCCHHHHHHHHHHhhcccccceeecc
Q 019686 276 IGIDGTPDAIKEAIKSAFGIRTKRAFWLE 304 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (337)
--|||+-. +||-+|.-|+-|-||++
T Consensus 87 wkidgsdn----tIK~sf~hr~yriYfIk 111 (134)
T PHA03092 87 WKIDGSDN----TIKRSFGHRPYRIYFIK 111 (134)
T ss_pred EEEcCccc----hhhhhhccccccEEEEE
Confidence 34788854 55667999999999997
No 44
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=28.04 E-value=2.2e+02 Score=20.10 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKK 142 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKK 142 (337)
....+|.+.+..|-+.|.. +.......-+.||..| ..+..|...-|.|=+..+|+
T Consensus 3 ~r~~~t~~q~~~L~~~f~~------~~~p~~~~~~~la~~l-----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 3 KRTRFTKEQLKVLEEYFQE------NPYPSKEEREELAKEL-----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSHHHHHHHHHHHHH------SSSCHHHHHHHHHHHH-----TSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH------hccccccccccccccc-----cccccccccCHHHhHHHhCc
Confidence 4467888888888888874 3345667788888887 58999999999998888775
No 45
>PTZ00044 ubiquitin; Provisional
Probab=27.88 E-value=1.3e+02 Score=22.62 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=38.5
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++.-+-|-..||+-|....|+=.. ...|.=.. +.|+-+.+|..| ++.+|.+|++.+
T Consensus 16 ~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g---~~L~d~~~l~~~--~i~~~~~i~l~~ 71 (76)
T PTZ00044 16 NFEPDNTVQQVKMALQEKEGIDVK-QIRLIYSG---KQMSDDLKLSDY--KVVPGSTIHMVL 71 (76)
T ss_pred EECCCCcHHHHHHHHHHHHCCCHH-HeEEEECC---EEccCCCcHHHc--CCCCCCEEEEEE
Confidence 444567899999999998886332 22232222 236778899998 578888998865
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=25.15 E-value=1.3e+02 Score=23.35 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=42.2
Q ss_pred EEEecCcceeeec--ccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEE
Q 019686 265 ISVKCGDYTRRIG--IDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHM 334 (337)
Q Consensus 265 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (337)
|+|||+--+--|- -|-|-..+|+.|.+..++=-.|-==+-.-- --.-|+-|++|..| .+.+|-.|.|
T Consensus 3 i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~-~Gk~l~D~~~L~~~--~i~~g~~i~l 71 (74)
T cd01813 3 VIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKV-KGKPAEDDVKISAL--KLKPNTKIMM 71 (74)
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecc-cCCcCCCCcCHHHc--CCCCCCEEEE
Confidence 6788876554444 456788999999999886444322221000 00136678999998 4557877765
No 47
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=23.88 E-value=1.6e+02 Score=22.20 Aligned_cols=56 Identities=9% Similarity=0.255 Sum_probs=39.7
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.|.-+.|-..+|+.|.+.+|+-...--++ -.- +.|+-+.+|..|- +.+|-+|+|.+
T Consensus 16 ~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G---~~L~d~~~L~~~~--i~~~~~l~l~~ 71 (74)
T cd01807 16 QVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG---KALADDKRLSDYS--IGPNAKLNLVV 71 (74)
T ss_pred EECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC---EECCCCCCHHHCC--CCCCCEEEEEE
Confidence 34456789999999999999877553333 222 3467788999984 66777877754
No 48
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=22.69 E-value=89 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTM 128 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQ 128 (337)
+.||++.+..|-++|.+ ..--.+|++.|. |+.|++..
T Consensus 1 M~Wtde~~~~L~~lw~~-----------G~SasqIA~~lg--~vsRnAVi 37 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAE-----------GLSASQIARQLG--GVSRNAVI 37 (162)
T ss_pred CCCCHHHHHHHHHHHHc-----------CCCHHHHHHHhC--Ccchhhhh
Confidence 47999999999999987 122345666654 46766655
No 49
>PF14920 MTBP_C: MDM2-binding
Probab=22.61 E-value=2.6e+02 Score=27.39 Aligned_cols=57 Identities=16% Similarity=0.397 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHHHHHhhccCCCCCCCCCccHHHHHHHHccc
Q 019686 105 SNKHLWEQISAKMREKGFDRSP---TMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKER 168 (337)
Q Consensus 105 rnk~lWEeIS~kM~ekGy~RTa---eQCr~KWKNLKk~YKKiKd~~kGsg~~kWpYFdeMDeILg~r 168 (337)
.+..+|+-|++.|+.+|+..+. .-|..|.=++.+.|-|-....+| -|++|..+-...
T Consensus 187 HtR~LkeVVa~tLk~hgI~e~H~cF~aCSqRLFeISKfyLKDLKTSRG-------L~eEMKKtA~~N 246 (251)
T PF14920_consen 187 HTRMLKEVVAETLKKHGITEAHECFKACSQRLFEISKFYLKDLKTSRG-------LFEEMKKTANNN 246 (251)
T ss_pred HHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhhhccc-------HHHHHHHHHhcC
Confidence 4568899999999999998543 68999999999998875544444 689998875543
No 50
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=22.54 E-value=1.4e+02 Score=23.43 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=46.3
Q ss_pred cceeeecccCCHHHHHHHHHHhhcccccc---eee-ccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 271 DYTRRIGIDGTPDAIKEAIKSAFGIRTKR---AFW-LEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
...||+-.+-|-..+|+-|...||+=... .++ -.+...+....|-+-.||.|- +.+|..|+|-
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~--~~dg~~i~V~ 81 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYG--IKDGMRIHVV 81 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT---STTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCC--CCCCCEEEEE
Confidence 35689999999999999999999974332 233 234455555556788999997 7899999873
No 51
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.54 E-value=4.7e+02 Score=22.00 Aligned_cols=64 Identities=9% Similarity=0.193 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhc
Q 019686 82 VQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (337)
Q Consensus 82 T~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd 145 (337)
+..++..+|.-...+...+......-.....++..|...+..-....+..+..+|+..|..+..
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 200 (213)
T cd00176 137 DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLE 200 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7788888998888888887765566667777888888887777778899999999999988764
No 52
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=22.34 E-value=2.4e+02 Score=19.95 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=37.7
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeec-cccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWL-EDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++.-+-|...+|+.|...+++-..| .+| -.. +-|+-+.+|+.|-+ .+|-.|.|-.
T Consensus 13 ~~~~~~ti~~lK~~i~~~~~~~~~~-~~l~~~g----~~l~d~~~l~~~~v--~~~~~i~v~~ 68 (69)
T cd01769 13 EVSPDDTVAELKAKIAAKEGVPPEQ-QRLIYAG----KILKDDKTLSDYGI--QDGSTLHLVL 68 (69)
T ss_pred EECCCChHHHHHHHHHHHHCcChHH-EEEEECC----cCCCCcCCHHHCCC--CCCCEEEEEE
Confidence 4445678999999999999976654 333 222 34677888887655 5677776643
No 53
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=22.19 E-value=1.2e+02 Score=33.08 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
....||.+|+..|-.+-.+ ...-|.+|...|. |.+..|+.+|++..+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~----------~g~~W~~Ig~~lg-----r~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVE----------HGNDWKEIGKALG-----RMPMDCRDRWRQYVK 429 (607)
T ss_pred ccCCCCcchHHHHHHHHHH----------hcccHHHHHHHHc-----cCcHHHHHHHHHhhc
Confidence 4457887777666554443 2356999999886 799999999996554
No 54
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=22.05 E-value=2.4e+02 Score=29.50 Aligned_cols=136 Identities=16% Similarity=0.319 Sum_probs=73.3
Q ss_pred CCCCCCCCcc-----cccchhHHHHHHHHHHhhhhh-h-hhHHHhhhcCCCC-----CCcc--hhhhccCCCCCCCC-cc
Q 019686 8 RPYLTEKPRP-----IDYYKDEAVAAAAAAAAAASS-R-DMIMEVAAASNGE-----LQPQ--QMILADSSGGEDHE-VR 72 (337)
Q Consensus 8 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~-----~~~~--~~~l~~s~ged~~~-~s 72 (337)
+-||-.|++. .-+|+++..+-.+-..-...+ + -+|.||+. ++. +++. ++++=-||++.+-+ ..
T Consensus 167 ~aYif~k~~~~~~G~Vv~Y~~~~~a~~~i~~~~~~g~~GyiI~Dv~~--~~~~p~~~~~~~~Wg~ivlssP~~~~~~~w~ 244 (439)
T PF07999_consen 167 EAYIFHKTGGGEAGRVVFYKDQEAAVSVINEMSSRGVKGYIIYDVAK--KGHQPSPELPPRGWGMIVLSSPNESNFEEWS 244 (439)
T ss_pred eEEEEEeccCCcCceEEEecCchHHHHHHHHHHhhCceEEEEEeccc--ccCccCCCcccCCCCEEEEcCCChhhccccc
Confidence 3455556443 688887652221111111111 1 46778874 321 2222 35555556655432 12
Q ss_pred C-C---CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCc-----hHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHH
Q 019686 73 A-P---KKRAETWVQDETRILIAFRREMDGLFNTSKSN-----KHLWEQISAKMREKG----FDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 73 ~-p---~~R~~~WT~eETklLI~Lr~E~~~~F~~skrn-----k~lWEeIS~kM~ekG----y~RTaeQCr~KWKNLKk~ 139 (337)
. + .==-+.+.+.|.++++. |..+...-...... ..-|+.|.++|.+-| |-.+...+..+.+.+...
T Consensus 245 k~~~~~~I~iNC~d~~e~KA~~a-W~r~~~~~~~~~~~a~~~~e~~W~~Ve~RI~~VGPlpRyVf~~~~Y~~R~~~v~~a 323 (439)
T PF07999_consen 245 KQRGALPIYINCYDEREVKAMCA-WMRRSQLAEEQPEQAEVELENYWKEVEERIDEVGPLPRYVFDEESYEKRLNEVESA 323 (439)
T ss_pred ccCCceeEEeeCCcHHHHHHHHH-HHHhchhhcccchhhhhHHHHHHHHHHHHHHHhccchHHHcCchhhHHHHHHHHHH
Confidence 1 1 11127899999999987 66653331111111 247999999999998 334666666777766666
Q ss_pred HHHhhcc
Q 019686 140 FKKTKHQ 146 (337)
Q Consensus 140 YKKiKd~ 146 (337)
-..+...
T Consensus 324 l~~i~~~ 330 (439)
T PF07999_consen 324 LNSINSD 330 (439)
T ss_pred HHhcchh
Confidence 5555533
No 55
>TIGR02870 spore_II_D stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell.
Probab=20.65 E-value=64 Score=32.47 Aligned_cols=34 Identities=29% Similarity=0.621 Sum_probs=25.0
Q ss_pred ccceEEEEecCcceeeecccCCHHHHHHHHHHhhcccccceeecc
Q 019686 260 FGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLE 304 (337)
Q Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (337)
-.|||..|+.|+.+ +.| +.||.+|+||.-+ |-++
T Consensus 255 ~sGrV~~l~vg~~~----~~g------~~~R~~lgL~St~-F~i~ 288 (338)
T TIGR02870 255 AGGRVKTIKIGGVT----LKG------REIRERLGLNSTD-FTWK 288 (338)
T ss_pred CCCCEEEEEEeeEE----EEH------HHHHHHhCCCCcc-eEEE
Confidence 56999999999753 333 3688889999987 5543
No 56
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=20.53 E-value=1.5e+02 Score=33.09 Aligned_cols=53 Identities=19% Similarity=0.523 Sum_probs=40.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
|.-....|+.+|-..|++.-.++- .+.|-.|.+.+ =+|+-.||+++..|....
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Yg---------~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRYG---------AKDWAKVRQAV----PNRSDSQCRERYTNVLNR 408 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhC---------ccchhhHHHhc----CCccHHHHHHHHHHHHHH
Confidence 455668999999999999887653 34576665553 359999999999888764
No 57
>PF14420 Clr5: Clr5 domain
Probab=20.50 E-value=1.5e+02 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=20.7
Q ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHH
Q 019686 110 WEQISAKMR-EKGFDRSPTMCTDKWR 134 (337)
Q Consensus 110 WEeIS~kM~-ekGy~RTaeQCr~KWK 134 (337)
-++|.+.|. +.||..|..|-+.+++
T Consensus 23 l~~v~~~M~~~~~F~at~rqy~~r~~ 48 (54)
T PF14420_consen 23 LEEVMEIMKEEHGFKATKRQYKRRFK 48 (54)
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 478899996 4699999998888776
No 58
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=20.44 E-value=2.2e+02 Score=31.56 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=52.5
Q ss_pred hhhhccCCCCCCC-CccCCCCC-----CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHH
Q 019686 57 QMILADSSGGEDH-EVRAPKKR-----AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCT 130 (337)
Q Consensus 57 ~~~l~~s~ged~~-~~s~p~~R-----~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr 130 (337)
+++|.-++-|... +.+.+.+. ...||++|..++.+...++-+.| +.|.+.|.+.-...|-.|.+
T Consensus 61 p~~l~pss~ept~~~~k~~qk~Lkt~~ktaWt~~E~~~Ffdal~~~GKdF----------e~VinaklKRrna~s~~~~K 130 (782)
T KOG4468|consen 61 PNLLSPSSIEPTQFPAKKPQKQLKTWAKTAWTHQEEESFFDALRQVGKDF----------EKVINAKLKRRNATSRVQSK 130 (782)
T ss_pred CCcCCccccCCcccccccchhhcccccccccchhhHHHHHHHHHHhcccH----------HHHHHHHHHhcccccchhhh
Confidence 4566555555443 33222221 35899999999988877655444 44555555555556777888
Q ss_pred HHHHHHHHHHHHhhccCC
Q 019686 131 DKWRNLLKEFKKTKHQDR 148 (337)
Q Consensus 131 ~KWKNLKk~YKKiKd~~k 148 (337)
+|.-+=...|+.++..++
T Consensus 131 tkdqvr~~yY~~~~~m~k 148 (782)
T KOG4468|consen 131 TKDQVRHYYYRLVRRMNK 148 (782)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 888887888888776554
No 59
>PF04619 Adhesin_Dr: Dr-family adhesin; InterPro: IPR006713 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity [].; PDB: 2JKL_D 2JKJ_B 1USQ_C 2JKN_E 1UT1_D 2W5P_A 1UT2_E 2IXQ_B 1RXL_A 1USZ_A ....
Probab=20.25 E-value=46 Score=29.89 Aligned_cols=17 Identities=41% Similarity=0.772 Sum_probs=14.3
Q ss_pred CCCccceEEeccCCceE
Q 019686 316 DMPVGNYTLHLDEGKLL 332 (337)
Q Consensus 316 ~~~~~~~~~~~~~~~~~ 332 (337)
+-|.|+|||+|+-|.=+
T Consensus 122 ~~p~g~YTlnL~GGyW~ 138 (139)
T PF04619_consen 122 NKPAGKYTLNLNGGYWA 138 (139)
T ss_dssp TSSSEEEEEEEEEEEEE
T ss_pred CCCCceEEEEeeccEee
Confidence 67999999999988543
Done!