Query 019686
Match_columns 337
No_of_seqs 150 out of 534
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 7.7E-25 2.6E-29 172.9 7.6 86 75-160 1-86 (86)
2 3sjm_A Telomeric repeat-bindin 98.1 4.5E-06 1.5E-10 62.9 5.4 55 72-138 5-60 (64)
3 1w0t_A Telomeric repeat bindin 97.8 2.9E-05 9.8E-10 55.7 5.9 49 78-138 2-51 (53)
4 1ity_A TRF1; helix-turn-helix, 97.8 5.2E-05 1.8E-09 57.1 6.4 53 74-138 6-59 (69)
5 2din_A Cell division cycle 5-l 97.5 0.00037 1.3E-08 51.9 7.4 54 74-142 5-58 (66)
6 2cqr_A RSGI RUH-043, DNAJ homo 97.5 0.00031 1.1E-08 54.4 7.1 56 73-138 13-68 (73)
7 1guu_A C-MYB, MYB proto-oncoge 97.5 0.00014 4.9E-09 51.6 4.7 47 78-137 3-49 (52)
8 2d9a_A B-MYB, MYB-related prot 97.4 0.00017 5.7E-09 52.7 5.0 52 73-137 3-54 (60)
9 2yum_A ZZZ3 protein, zinc fing 97.4 0.00057 1.9E-08 52.0 7.3 57 73-137 3-59 (75)
10 2dim_A Cell division cycle 5-l 97.3 0.00031 1E-08 52.9 5.4 52 73-137 4-55 (70)
11 2cqq_A RSGI RUH-037, DNAJ homo 97.3 0.0012 4E-08 50.9 8.1 53 76-139 6-58 (72)
12 1x41_A Transcriptional adaptor 97.2 0.0006 2.1E-08 50.0 6.0 49 76-137 6-54 (60)
13 2elk_A SPCC24B10.08C protein; 97.2 0.00085 2.9E-08 49.1 6.2 46 79-136 10-55 (58)
14 2llk_A Cyclin-D-binding MYB-li 97.1 0.00055 1.9E-08 53.0 5.3 50 74-138 19-68 (73)
15 2roh_A RTBP1, telomere binding 97.1 0.0011 3.6E-08 56.2 7.3 57 74-139 27-83 (122)
16 2cu7_A KIAA1915 protein; nucle 97.1 0.0011 3.6E-08 50.3 6.5 53 73-139 4-56 (72)
17 1gvd_A MYB proto-oncogene prot 97.1 0.0005 1.7E-08 48.8 4.3 47 78-137 3-49 (52)
18 2juh_A Telomere binding protei 97.1 0.0019 6.7E-08 54.5 8.3 57 74-139 13-69 (121)
19 2yus_A SWI/SNF-related matrix- 97.0 0.00057 1.9E-08 53.4 4.0 49 74-136 14-62 (79)
20 2ckx_A NGTRF1, telomere bindin 96.8 0.002 6.7E-08 51.0 6.0 51 80-139 2-52 (83)
21 3osg_A MYB21; transcription-DN 96.7 0.0015 5.3E-08 54.2 5.0 51 75-139 59-109 (126)
22 2cjj_A Radialis; plant develop 96.7 0.0042 1.4E-07 50.1 7.3 57 78-144 8-64 (93)
23 2k9n_A MYB24; R2R3 domain, DNA 96.7 0.0033 1.1E-07 50.7 6.6 52 74-139 49-100 (107)
24 2aje_A Telomere repeat-binding 96.6 0.0018 6.3E-08 53.4 4.4 57 73-139 8-65 (105)
25 1gv2_A C-MYB, MYB proto-oncoge 96.4 0.0019 6.4E-08 51.6 3.5 52 74-139 52-103 (105)
26 3osg_A MYB21; transcription-DN 96.4 0.0035 1.2E-07 52.0 5.1 49 75-137 8-56 (126)
27 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0063 2.2E-07 49.0 5.0 46 79-137 2-47 (107)
28 1gv2_A C-MYB, MYB proto-oncoge 96.0 0.005 1.7E-07 49.1 3.8 46 78-136 4-49 (105)
29 2ltp_A Nuclear receptor corepr 94.9 0.0013 4.5E-08 52.1 0.0 54 73-140 11-64 (89)
30 1h8a_C AMV V-MYB, MYB transfor 95.9 0.0071 2.4E-07 50.0 4.3 51 74-137 23-73 (128)
31 1x58_A Hypothetical protein 49 95.8 0.013 4.4E-07 44.4 5.0 50 77-138 7-57 (62)
32 1h8a_C AMV V-MYB, MYB transfor 95.7 0.0047 1.6E-07 51.1 2.6 51 74-138 75-125 (128)
33 3zqc_A MYB3; transcription-DNA 95.5 0.0055 1.9E-07 51.1 2.4 51 74-138 50-100 (131)
34 1h89_C C-MYB, MYB proto-oncoge 94.8 0.02 6.9E-07 48.9 3.9 51 74-137 54-104 (159)
35 1h89_C C-MYB, MYB proto-oncoge 94.6 0.015 5.2E-07 49.6 2.5 51 74-138 106-156 (159)
36 3zqc_A MYB3; transcription-DNA 94.2 0.014 4.7E-07 48.6 1.3 46 79-137 3-48 (131)
37 1wgx_A KIAA1903 protein; MYB D 93.4 0.097 3.3E-06 40.6 4.7 51 77-137 7-57 (73)
38 1ign_A Protein (RAP1); RAP1,ye 92.1 0.091 3.1E-06 49.2 3.5 54 77-138 7-60 (246)
39 1ug2_A 2610100B20RIK gene prod 91.8 1.1 3.7E-05 36.4 9.0 66 71-147 26-91 (95)
40 3hm5_A DNA methyltransferase 1 91.3 0.36 1.2E-05 39.0 5.8 56 79-144 31-87 (93)
41 2iw5_B Protein corest, REST co 89.9 0.27 9.1E-06 45.8 4.3 50 74-137 129-178 (235)
42 2eqr_A N-COR1, N-COR, nuclear 89.4 0.42 1.4E-05 35.0 4.3 45 76-134 10-54 (61)
43 2lr8_A CAsp8-associated protei 87.9 0.093 3.2E-06 40.5 0.0 57 77-145 13-69 (70)
44 1ndd_A NEDD8, protein (ubiquit 78.4 6.1 0.00021 28.0 6.3 66 265-336 3-71 (76)
45 1wx7_A Ubiquilin 3; ubiquitin- 77.7 7.5 0.00026 30.4 7.2 68 263-336 18-87 (106)
46 1fex_A TRF2-interacting telome 77.0 2.4 8.1E-05 31.1 3.7 52 79-135 3-55 (59)
47 4iej_A DNA methyltransferase 1 74.7 6 0.00021 31.9 5.8 57 79-145 31-88 (93)
48 2xag_B REST corepressor 1; ami 74.2 2.8 9.6E-05 42.6 4.6 44 75-132 377-420 (482)
49 3a9j_A Ubiquitin; protein comp 73.4 10 0.00034 26.8 6.3 59 272-336 13-71 (76)
50 1j8c_A Ubiquitin-like protein 70.1 29 0.00098 28.3 9.1 69 262-336 32-102 (125)
51 4eew_A Large proline-rich prot 60.7 17 0.00059 26.9 5.6 66 264-336 19-87 (88)
52 3n3k_B Ubiquitin; hydrolase, p 60.7 21 0.00073 25.8 6.0 59 272-336 16-74 (85)
53 3dbh_I NEDD8; cell cycle, acti 59.9 20 0.00068 26.2 5.8 68 263-336 13-83 (88)
54 1yx5_B Ubiquitin; proteasome, 59.8 23 0.00079 26.9 6.3 65 265-335 3-70 (98)
55 3mtn_B UBA80, ubcep1, ubiquiti 59.7 24 0.00081 25.5 6.1 58 273-336 17-74 (85)
56 2yqk_A Arginine-glutamic acid 59.2 11 0.00038 27.6 4.1 45 72-130 3-48 (63)
57 3phx_B Ubiquitin-like protein 58.3 27 0.00092 25.2 6.2 56 275-336 20-75 (79)
58 3k9o_B Ubiquitin, UBB+1; E2-25 58.0 29 0.001 26.0 6.5 59 272-336 14-72 (96)
59 2bwf_A Ubiquitin-like protein 56.1 33 0.0011 24.3 6.3 65 265-335 7-73 (77)
60 4dwf_A HLA-B-associated transc 55.1 25 0.00084 26.1 5.6 65 265-336 8-75 (90)
61 2l7r_A Ubiquitin-like protein 54.6 19 0.00066 27.4 5.0 68 263-336 20-88 (93)
62 2dzi_A Ubiquitin-like protein 53.1 29 0.001 24.8 5.6 67 264-336 9-78 (81)
63 3b08_A Polyubiquitin-C, ubiqui 52.7 29 0.001 27.7 6.1 57 272-334 13-69 (152)
64 2klc_A Ubiquilin-1; ubiquitin- 52.6 38 0.0013 26.2 6.6 67 264-336 27-95 (101)
65 1wy8_A NP95-like ring finger p 52.5 23 0.00079 26.2 5.1 68 263-336 8-80 (89)
66 2faz_A Ubiquitin-like containi 49.8 57 0.0019 23.3 6.7 67 264-336 4-75 (78)
67 3v6c_B Ubiquitin; structural g 49.7 62 0.0021 24.1 7.2 67 264-336 19-88 (91)
68 3m63_B Ubiquitin domain-contai 47.5 30 0.001 27.0 5.2 67 264-336 30-98 (101)
69 4fbj_B NEDD8; effector-HOST ta 47.1 40 0.0014 25.2 5.7 56 275-336 16-71 (88)
70 4hcn_B Polyubiquitin, ubiquiti 46.8 40 0.0014 25.7 5.8 67 264-336 24-93 (98)
71 2c9l_Y EB1, zebra, BZLF1 trans 46.0 16 0.00054 27.1 3.0 20 126-145 13-32 (63)
72 2kan_A Uncharacterized protein 45.3 35 0.0012 26.2 5.2 69 262-336 15-86 (94)
73 1yqb_A Ubiquilin 3; structural 45.0 35 0.0012 26.4 5.2 68 263-336 23-92 (100)
74 3m62_B UV excision repair prot 44.6 38 0.0013 26.5 5.4 55 276-336 18-72 (106)
75 1wh3_A 59 kDa 2'-5'-oligoadeny 43.8 58 0.002 23.7 6.1 69 262-336 7-78 (87)
76 2wyq_A HHR23A, UV excision rep 43.6 74 0.0025 23.0 6.6 67 264-336 7-79 (85)
77 1uel_A HHR23B, UV excision rep 43.5 56 0.0019 24.7 6.1 59 272-336 13-74 (95)
78 3b08_A Polyubiquitin-C, ubiqui 43.4 65 0.0022 25.6 6.8 69 262-336 76-147 (152)
79 3u30_A Ubiquitin, linear DI-ub 39.5 66 0.0023 26.8 6.5 66 264-335 22-90 (172)
80 1x1m_A Ubiquitin-like protein 39.2 66 0.0023 25.0 6.0 79 253-336 3-98 (107)
81 1we6_A Splicing factor, putati 39.1 67 0.0023 25.1 6.1 59 272-336 43-102 (111)
82 1v5o_A 1700011N24RIK protein; 39.0 42 0.0014 25.9 4.8 66 264-335 9-82 (102)
83 1irz_A ARR10-B; helix-turn-hel 38.6 64 0.0022 24.1 5.5 52 73-133 2-53 (64)
84 1wgd_A Homocysteine-responsive 37.4 50 0.0017 24.8 4.9 70 263-336 8-84 (93)
85 2ojr_A Ubiquitin; lanthide-bin 36.4 77 0.0026 24.8 6.0 68 263-336 36-106 (111)
86 1v86_A DNA segment, CHR 7, way 35.4 1.3E+02 0.0043 22.9 7.0 66 263-335 18-85 (95)
87 1v5t_A 8430435I17RIK protein; 35.4 57 0.0019 24.6 4.9 65 265-335 10-80 (90)
88 4eef_G F-HB80.4, designed hema 35.3 2.3 7.9E-05 33.1 -3.0 47 76-132 18-64 (74)
89 2hj8_A Interferon-induced 17 k 35.0 65 0.0022 23.9 5.2 66 265-336 7-75 (88)
90 3vdz_A Ubiquitin-40S ribosomal 34.8 87 0.003 24.6 6.1 68 263-336 36-106 (111)
91 1wx8_A Riken cDNA 4931431F19; 33.8 82 0.0028 23.6 5.6 68 263-336 18-87 (96)
92 1wlx_A Alpha-actinin 4; three- 32.7 72 0.0025 26.9 5.5 58 82-139 43-113 (129)
93 1sif_A Ubiquitin; hydrophobic 31.8 74 0.0025 23.7 5.0 57 274-336 24-80 (88)
94 3rt3_B Ubiquitin-like protein 31.1 1.3E+02 0.0045 24.4 6.9 65 265-334 5-73 (159)
95 4b6w_A Tubulin-specific chaper 30.0 56 0.0019 24.9 4.1 62 272-335 17-81 (86)
96 1ttn_A DC-UBP, dendritic cell- 29.9 56 0.0019 25.4 4.2 67 264-336 25-94 (106)
97 2kd0_A LRR repeats and ubiquit 28.7 1.2E+02 0.0043 22.4 5.8 67 263-335 13-81 (85)
98 1t0y_A Tubulin folding cofacto 27.5 1E+02 0.0035 24.7 5.5 63 271-336 19-85 (122)
99 1hkq_A REPA, replication prote 26.9 15 0.00052 30.1 0.3 44 261-308 42-88 (132)
100 1wgg_A Ubiquitin carboxyl-term 25.9 1.2E+02 0.0041 23.2 5.4 65 264-335 9-76 (96)
101 1v6e_A Cytoskeleton-associated 23.5 1.2E+02 0.0042 22.9 5.0 62 271-335 20-85 (95)
102 1wia_A Hypothetical ubiquitin- 23.2 89 0.0031 23.4 4.1 65 263-336 8-76 (95)
103 2kj6_A Tubulin folding cofacto 23.0 95 0.0033 24.2 4.3 62 271-335 28-93 (97)
104 3b1l_X E3 ubiquitin-protein li 28.5 18 0.00061 25.8 0.0 59 272-336 13-71 (76)
105 1ut1_A DRAA, DR hemagglutinin 22.8 22 0.00075 30.8 0.6 18 315-332 130-147 (148)
106 4a69_C Nuclear receptor corepr 22.7 67 0.0023 25.2 3.3 40 77-130 42-81 (94)
107 1we7_A SF3A1 protein; structur 22.5 1.3E+02 0.0043 23.6 5.0 64 260-336 43-106 (115)
108 3rt3_B Ubiquitin-like protein 22.5 1.8E+02 0.0062 23.5 6.2 56 275-336 97-152 (159)
109 1wf9_A NPL4 family protein; be 22.0 1.6E+02 0.0055 22.9 5.5 71 263-336 8-93 (107)
110 3l0w_B Monoubiquitinated proli 21.9 1.9E+02 0.0064 24.5 6.3 56 275-336 16-71 (169)
111 1wjn_A Tubulin-folding protein 21.7 90 0.0031 23.7 3.9 62 271-335 24-90 (97)
112 1x4p_A Putative splicing facto 20.4 22 0.00076 27.0 0.1 27 276-307 17-44 (66)
113 1wxv_A BAG-family molecular ch 20.4 1.6E+02 0.0056 21.7 5.1 67 263-335 8-82 (92)
114 2kzr_A Ubiquitin thioesterase 20.4 1.8E+02 0.006 21.5 5.2 65 265-334 3-74 (86)
115 1rxl_A AFAE-DSC, afimbrial adh 20.3 25 0.00084 30.7 0.4 18 315-332 118-135 (156)
116 4dbg_A Ranbp-type and C3HC4-ty 20.1 1.1E+02 0.0039 24.5 4.3 58 275-337 42-99 (105)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.91 E-value=7.7e-25 Score=172.94 Aligned_cols=86 Identities=91% Similarity=1.401 Sum_probs=81.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 019686 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK 154 (337)
Q Consensus 75 ~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~kGsg~~k 154 (337)
++|..+||++||++||++|.+++..|..++++..+|++||+.|.++||+||+.||+.||+||++.|++++++++.+|+.+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~ 80 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK 80 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 46899999999999999999999999998899999999999999999999999999999999999999999987667779
Q ss_pred CccHHH
Q 019686 155 MSYYKE 160 (337)
Q Consensus 155 WpYFde 160 (337)
|+||++
T Consensus 81 ~~yf~e 86 (86)
T 2ebi_A 81 MSYYKE 86 (86)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 999974
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.08 E-value=4.5e-06 Score=62.88 Aligned_cols=55 Identities=22% Similarity=0.498 Sum_probs=40.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 019686 72 RAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (337)
Q Consensus 72 s~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy-~RTaeQCr~KWKNLKk 138 (337)
+....+...||.+|-..|+++...+ .. .-|..|++.+ ++ .||+.||++||+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~----G~-----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKY----GE-----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHH----CT-----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc----CC-----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 3344455689999999999988764 11 1399998764 34 4999999999999985
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.84 E-value=2.9e-05 Score=55.71 Aligned_cols=49 Identities=27% Similarity=0.576 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy-~RTaeQCr~KWKNLKk 138 (337)
...||.+|...|+++...+- ..-|..|+..| ++ .||+.||+++|.||.+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 35899999999999988641 12599999886 46 4999999999999975
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.76 E-value=5.2e-05 Score=57.11 Aligned_cols=53 Identities=25% Similarity=0.560 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy-~RTaeQCr~KWKNLKk 138 (337)
+..+...||.+|-..|+++...+ . ..-|..|+..| +| .||+.||+++|.|+.+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~----G-----~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKY----G-----EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHH----C-----SSCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----C-----CCcHHHHHHHc---CcCCCCHHHHHHHHHHHcC
Confidence 45566799999999999998764 1 12599999887 45 7999999999999875
No 5
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.00037 Score=51.90 Aligned_cols=54 Identities=19% Similarity=0.513 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKK 142 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKK 142 (337)
|.-....||.+|-..|+++... +. .-|..||. |- | ||+.||+++|.++.+.-.+
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~----~g------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL----MP------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH----CT------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----cC------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 3445568999999999998653 21 25999999 54 4 9999999999999875433
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.46 E-value=0.00031 Score=54.35 Aligned_cols=56 Identities=16% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
.+......||.+|-++|+.+...+ . +....-|..||+.|- .||..||+.+|.+|..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~----g--~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQY----P--RGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHS----C--SSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHc----C--CCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 344456789999999999987643 2 123578999998874 4999999999999864
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.45 E-value=0.00014 Score=51.56 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
...||.+|-..|+++...+ .. .-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN----GT-----DDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH----CS-----SCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh----CC-----CCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4689999999999998764 11 24999999874 599999999999875
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.43 E-value=0.00017 Score=52.75 Aligned_cols=52 Identities=19% Similarity=0.532 Sum_probs=41.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
.|..+...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFG---------QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTC---------TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 3455667999999999999887631 124999999974 499999999998764
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00057 Score=51.98 Aligned_cols=57 Identities=11% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
.|......||.+|-..|+++... |........-|..||+.|. .||..||+.+|.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYF 59 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 34556679999999999998764 3222223467999999985 499999999996554
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.00031 Score=52.91 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=42.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
.|.-+...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG---------KNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC---------SSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 4555778999999999999887531 135999999985 699999999998754
No 11
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.25 E-value=0.0012 Score=50.91 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
.....||.+|-++|..+.. .|.... ..-|+.||+.| | ||.+||+.+|+.|+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3456899999999998876 443222 35699999998 4 9999999999999765
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.23 E-value=0.0006 Score=50.04 Aligned_cols=49 Identities=12% Similarity=0.380 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
-....||.+|-..||++...+ .. .-|..||+.|. .||+.||+.+|.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDC----GF-----GNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT----CT-----TCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHH----Cc-----CcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 345689999999999997653 11 25999999994 499999999998764
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.16 E-value=0.00085 Score=49.07 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNL 136 (337)
..||.+|-..|+++...+- ..-|..||+.|. -.||+.||+.+|.++
T Consensus 10 ~~WT~eED~~L~~~v~~~G---------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLG---------LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTT---------TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 4699999999999887531 135999999884 369999999999875
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.14 E-value=0.00055 Score=53.00 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
|.-....||.+|-..|+++..++- + -|..||..| .||..||+++|+.|++
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G--------~--kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHG--------N--DWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHS--------S--CHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC--------C--CHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 455667999999999999987631 1 199999998 5999999999998864
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.13 E-value=0.0011 Score=56.22 Aligned_cols=57 Identities=18% Similarity=0.375 Sum_probs=43.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
..++...||.+|...|++....+ .. .-|..|+..+...=-.||..||++||+||.+.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GT-----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SS-----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC-----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 44566799999999999988864 11 25999998653211259999999999999974
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.11 E-value=0.0011 Score=50.32 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
.|.-....||.+|-..|+++...+- .-|..||..|. .||..||+++|.++.+.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG----------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 3455677999999999999887631 15999999874 49999999999988654
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.10 E-value=0.0005 Score=48.80 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHC---------cChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 45899999999999887631 124999999873 599999999998753
No 18
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.06 E-value=0.0019 Score=54.53 Aligned_cols=57 Identities=14% Similarity=0.333 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
+..+...||.+|...|++....+- ..-|..|+..+...=-.||..||++||+||.+.
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G---------~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLG---------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHG---------GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 445567999999999999888642 125999988764211259999999999999975
No 19
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.98 E-value=0.00057 Score=53.42 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=39.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNL 136 (337)
.......||.+|..+||++...+ . .-|..||+.|. .||+.||+.+|.+|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~----G------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMY----K------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHS----S------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHh----C------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 34456799999999999987652 2 35999999984 59999999999866
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.84 E-value=0.002 Score=51.00 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 80 TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 80 ~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
.||.+|...|++....+ .. .-|..|++.-...=-.||..||++||+||.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~-----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CC-----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999988863 11 25999987521100159999999999999973
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.74 E-value=0.0015 Score=54.19 Aligned_cols=51 Identities=16% Similarity=0.407 Sum_probs=41.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 75 ~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
.-....||.+|-..|++++.++- .-|..||..|. .||..||+++|.+|.+.
T Consensus 59 ~~~~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 59 SISHTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 33456899999999999988752 13999998653 59999999999999875
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.73 E-value=0.0042 Score=50.10 Aligned_cols=57 Identities=12% Similarity=0.384 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhh
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK 144 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiK 144 (337)
...||.+|-++|+++... |.. ....-|+.||..|- .||..||+.+|++|...-+.++
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~--~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDK--DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCT--TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----cCC--CCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhh
Confidence 458999999999988764 221 12467999999874 3999999999999998765554
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.70 E-value=0.0033 Score=50.68 Aligned_cols=52 Identities=23% Similarity=0.502 Sum_probs=42.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
|.-....||.+|-..|+.+...+- .-|..||..|. .||..||+++|.+|.+.
T Consensus 49 p~i~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 49 PALRTDPWSPEEDMLLDQKYAEYG----------PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHhC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 334567999999999999987641 14999999884 59999999999999875
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.59 E-value=0.0018 Score=53.40 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=42.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekG-y~RTaeQCr~KWKNLKk~ 139 (337)
.+.++...||.+|...|++....+ .. --|..|+..+.. - -.||..||++||+||.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~-~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL----GT-----GRWRDVKLCAFE-DADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH----CS-----SSHHHHHSSSSS-STTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh----CC-----CChHHHHHHhcc-ccCCCCHHHHHHHHHHHHhh
Confidence 345566799999999999988753 11 259988764311 1 259999999999999973
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.45 E-value=0.0019 Score=51.61 Aligned_cols=52 Identities=17% Similarity=0.606 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~ 139 (337)
|.-....||.+|-..|+++...+- .-|..||..|. .||..||+++|.+|.+.
T Consensus 52 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 52 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHS----------SCHHHHHTTCT----TCCHHHHHHHHHHHTC-
T ss_pred CcccccCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 344567999999999999987641 24999997653 49999999999998753
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.42 E-value=0.0035 Score=52.04 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=39.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 75 ~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
..+...||.+|-..|+++...+- .-|..||..|. .||+.||+.+|.|..
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G----------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHG----------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHT----------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 34567899999999999998651 14999998764 599999999999755
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.13 E-value=0.0063 Score=49.01 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence 4799999999999987642 135999999885 599999999998753
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.99 E-value=0.005 Score=49.12 Aligned_cols=46 Identities=20% Similarity=0.598 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019686 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (337)
Q Consensus 78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNL 136 (337)
...||.+|...|+.+...+-. .-|..||..|. .||+.||+.+|.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---------KRWSVIAKHLK----GRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---------TCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---------CcHHHHhhhhc----CCCHHHHHHHHHhc
Confidence 458999999999999876421 24999998874 59999999999875
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.89 E-value=0.0013 Score=52.10 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEF 140 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~Y 140 (337)
.|.-....||.+|-..||++...+ + .-|..||..|. .||..||++.|.++.+.+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~-----G-----~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEH-----G-----RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 344456799999999999988764 1 23999999885 599999999999988764
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.86 E-value=0.0071 Score=50.02 Aligned_cols=51 Identities=22% Similarity=0.627 Sum_probs=40.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
|.-....||.+|...|+++...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYG----P-----KRWSDIAKHLK----GRIGKQCRERWHNHL 73 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTC----S-----CCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC----C-----CCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence 344557899999999999887531 1 24999999874 599999999998744
No 31
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.78 E-value=0.013 Score=44.36 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy-~RTaeQCr~KWKNLKk 138 (337)
....||.+|...||+...++ . .-|..|+..-.- + .||....++||+||.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~----G------~~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM----G------NHWNSILWSFPF--QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH----C------SCHHHHHHHSCC--CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH----h------HhHHHHHHhCCC--ccCcccchHHHHHHHHHh
Confidence 45699999999999998865 1 249888764321 3 5999999999999986
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.71 E-value=0.0047 Score=51.13 Aligned_cols=51 Identities=18% Similarity=0.623 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
|.-....||.+|-..|+++..++- .-|..||..|. .||..||+++|.+|.+
T Consensus 75 p~~~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 75 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SSSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 344567899999999999988652 24999998753 5999999999998864
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.54 E-value=0.0055 Score=51.06 Aligned_cols=51 Identities=14% Similarity=0.424 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
|.-....||.+|-..|++++.++- .-|..||..|. .||..||+++|.++.+
T Consensus 50 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 50 PAVVKHAWTPEEDETIFRNYLKLG----------SKWSVIAKLIP----GRTDNAIKNRWNSSIS 100 (131)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHSC----------SCHHHHTTTST----TCCHHHHHHHHHHTTG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 344556899999999999887542 13999998763 5999999999998775
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.85 E-value=0.02 Score=48.85 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
|.-....||.+|-..|+.+...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 54 p~~~~~~Wt~eEd~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 54 PELIKGPWTKEEDQRVIKLVQKYG----P-----KRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHHC----S-----CCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCcCCCCCChHHHHHHHHHHHHhC----c-----ccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 344567999999999999987541 1 24999998874 599999999998753
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.58 E-value=0.015 Score=49.64 Aligned_cols=51 Identities=18% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
|.-+...||.+|-..|++++..+- .-|..||..|. .||..||+++|..|.+
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 344567999999999999987642 24999998653 4999999999998764
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.17 E-value=0.014 Score=48.60 Aligned_cols=46 Identities=24% Similarity=0.620 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENG---------PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 4799999999999887641 124999998773 599999999998765
No 37
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.40 E-value=0.097 Score=40.58 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
....||.+|.++|...... |.. ....-|+.||+.+- .||.++|..+++.|.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~----~~~--~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFAS----LPK--HKPGFWSEVAAAVG----SRSPEECQRKYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHH----SCS--SSSSHHHHHHHHTT----TSCHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHH----CCC--CCccHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 3468999999999887653 322 23468999998874 299999998877764
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=92.12 E-value=0.091 Score=49.20 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk 138 (337)
....||.+|-..||++...+-. .+...+.|.+||..|. .||..||+++|+++.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn----~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPT----RRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGG----GTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCCCHHHHHHHHHHHHHhCc----CccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 3458999999999998875322 1223456999998765 5999999999999664
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=91.83 E-value=1.1 Score=36.43 Aligned_cols=66 Identities=17% Similarity=0.481 Sum_probs=52.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccC
Q 019686 71 VRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQD 147 (337)
Q Consensus 71 ~s~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~ 147 (337)
++..-..-.-||.++-+.+|..+.+ .....+.|..||..|. +|++.|.+++|..|.+-|.+.....
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~-------~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~~~~ 91 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred ecCCCCEEEEeccccCHHHHHHHHh-------cCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHhccC
Confidence 3444456689999999988887765 3345677889999986 5899999999999999999876543
No 40
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=91.31 E-value=0.36 Score=38.98 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHhh
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLKEFKKTK 144 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy-~RTaeQCr~KWKNLKk~YKKiK 144 (337)
..||.+||..|+++.+++.. -|-.|+.++.-.++ .||.++.+.++-.+.+...+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999987543 36678888765554 5999999999999999887776
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=89.87 E-value=0.27 Score=45.80 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019686 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (337)
Q Consensus 74 p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLK 137 (337)
..+....||++|.+.|++....+- +-|..||+.|. .||..||++-|-+-+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG----------KDW~~IAk~Vg----TKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS----------SCHHHHHHHHS----SCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 345678999999999988776532 12999999874 599999998775433
No 42
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.44 E-value=0.42 Score=34.96 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 019686 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWK 134 (337)
+....||.+|..+|++.+..+ .+-|..||..|. .||..||...|-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Yy 54 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYYY 54 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHH
Confidence 466899999999999888753 135999997664 599999987654
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=87.94 E-value=0.093 Score=40.55 Aligned_cols=57 Identities=19% Similarity=0.503 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhc
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd 145 (337)
.--.||.+|-+.+|..+.+ .....+.|..||..| +||+.|..++|..|.+-|.+.|.
T Consensus 13 ~vvlWTReeDR~IL~~cq~-------~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQK-------RGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 3467999998888776554 334457899999887 49999999999999999988764
No 44
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=78.43 E-value=6.1 Score=27.97 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=46.0
Q ss_pred EEEec--Cc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 265 ISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 265 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
|.||+ |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|.+|..|- +.+|-+|++.+
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 71 (76)
T 1ndd_A 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADYK--ILGGSVLHLVL 71 (76)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 44554 32 44556667889999999999999876665554432 3466788999984 56788888764
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.71 E-value=7.5 Score=30.39 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=49.0
Q ss_pred eEEEEec--CcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKC--GDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||+ |.++-.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|+|.+
T Consensus 18 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 87 (106)
T 1wx7_A 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCG--VRDGLTVHLVI 87 (106)
T ss_dssp EEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETT----EECCTTSCHHHHT--CCTTEEEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHcC--CCCCCEEEEEE
Confidence 3467776 4466666777899999999999999876665554432 3466688898885 45788888764
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=77.01 E-value=2.4 Score=31.07 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISA-KMREKGFDRSPTMCTDKWRN 135 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~-kM~ekGy~RTaeQCr~KWKN 135 (337)
..+|.+|=..|++.-.++.. ......-..+|+++++ .+ -..|..+|+++|.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 57999999999998877533 1123356799999887 33 35899999999874
No 47
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=74.72 E-value=6 Score=31.92 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHhhc
Q 019686 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLKEFKKTKH 145 (337)
Q Consensus 79 ~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekG-y~RTaeQCr~KWKNLKk~YKKiKd 145 (337)
..||.+||..|+++.++++-+ |-.|+.+..-.+ ..||.++.+.++-.+.+...+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----------w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----------eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 479999999999999875433 445555543223 358999998888888877766664
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=74.20 E-value=2.8 Score=42.59 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 019686 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDK 132 (337)
Q Consensus 75 ~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~K 132 (337)
.+....||++|..+|++....+ . +-|..|++.+. .+|..||+.=
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~y----G------kdw~~IA~~Vg----TKT~~Qvk~f 420 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKY----G------RDFQAISDVIG----NKSVVQVKNF 420 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHH----T------TCHHHHHHHHS----SCCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHH----C------cCHHHHHHHhC----CCCHHHHHHH
Confidence 4578999999999998877653 1 24999999875 5899999973
No 49
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=73.38 E-value=10 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=42.0
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++-.+.-+-|-..+|+.|...+++-..+--++-.. +.|+-+..|..|- +.+|-+|++.+
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 71 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQRESTLHLVL 71 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTGGGT--CCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC----eECCCCCcHHHcC--CCCCCEEEEEE
Confidence 44456667789999999999999876655444432 2466688999884 45788887753
No 50
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.05 E-value=29 Score=28.30 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=47.7
Q ss_pred ceEEEEec-C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 262 GKVISVKC-G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 262 g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.--|.||. | .++-.|--+-|-..+|+.|...+++-..+--.+-.- +.|+-|..|+.|-+ .+|-+|.|.+
T Consensus 32 ~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~dygI--~~gstI~lv~ 102 (125)
T 1j8c_A 32 IIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAG----KILKDQDTLIQHGI--HDGLTVHLVI 102 (125)
T ss_dssp CEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETT----EEESTTSCGGGTTC--SSSEEEEEEE
T ss_pred cEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECC----EEcCCCCCHHHcCC--CCCCEEEEEe
Confidence 34567776 3 345566667899999999999999866554443332 24666788998854 5788888764
No 51
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=60.74 E-value=17 Score=26.90 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=47.9
Q ss_pred EEEEecC---cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKCG---DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||+- .++=.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+.+|+.|-+ +|-+|+|.+
T Consensus 19 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~i---~g~~i~lv~ 87 (88)
T 4eew_A 19 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG----RVLQDDKKLQEYNV---GGKVIHLVE 87 (88)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGTC---TTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----EECCCCCcHHHcCC---CCcEEEEEE
Confidence 4667762 234456666788999999999999887776554422 34677889999976 499999874
No 52
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=60.73 E-value=21 Score=25.83 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=43.4
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|+|.+
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~i~l~~ 74 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IHNHSALYLLL 74 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB----EECCTTCBTTTTT--CCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC----eECCCCCCHHHCC--CCCCCEEEEEE
Confidence 44455567789999999999999887765554432 3467788999984 56788888764
No 53
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=59.93 E-value=20 Score=26.24 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=46.8
Q ss_pred eEEEEec-C--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKC-G--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||. . .++=.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..| .+.+|-+|+|.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~--~i~~~~~i~l~~ 83 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADY--KILGGSVLHLVL 83 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT----EECCTTSBGGGG--TCCTTCEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECC----eECCCCCcHHHc--CCCCCCEEEEEE
Confidence 3456663 2 233345556688999999999999876665444432 346778999998 456888888764
No 54
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=59.76 E-value=23 Score=26.91 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=43.6
Q ss_pred EEEec--Cc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 265 ISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 265 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
|.||. |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|.|.
T Consensus 3 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~ 70 (98)
T 1yx5_B 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLV 70 (98)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEE
Confidence 45554 32 44455556788999999999999876655444432 2456688898884 4577777764
No 55
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=59.73 E-value=24 Score=25.50 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=42.5
Q ss_pred eeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 273 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|+|.+
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~l~l~~ 74 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKWSTLFLLL 74 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBTGGGT--CCTTCEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 3345556789999999999999877665554432 3567788999984 57788888764
No 56
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.17 E-value=11 Score=27.57 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=31.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHH-HHHcCCCCCHHHHH
Q 019686 72 RAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAK-MREKGFDRSPTMCT 130 (337)
Q Consensus 72 s~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~k-M~ekGy~RTaeQCr 130 (337)
+.|......||++|...+.+....+-. -|..|+.. |. .+|..||.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK----------df~~I~~~~v~----~Kt~~~~v 48 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK----------NFFRIRKELLP----NKETGELI 48 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS----------CHHHHHHHSCT----TSCHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc----------cHHHHHHHHcC----CCcHHHHH
Confidence 356667789999999888776654221 28888875 32 48999995
No 57
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.34 E-value=27 Score=25.19 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=41.4
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.+.-+-|-..+|+.|...+|+-..+--++-.- +.|+-+..|+.|- +.+|-+|++.+
T Consensus 20 ~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~l~l~~ 75 (79)
T 3phx_B 20 EVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG----KPLEDQLPLGEYG--LKPLSTVFMNL 75 (79)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred EECCcChHHHHHHHHHhhcCCCHHHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 34445688999999999999877765554433 3567788999985 56788888764
No 58
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=58.02 E-value=29 Score=25.95 Aligned_cols=59 Identities=15% Similarity=0.270 Sum_probs=43.5
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++=.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|+|.+
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~i~l~~ 72 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 72 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 33445556788999999999999987776555433 3477788999985 56788888764
No 59
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=56.15 E-value=33 Score=24.30 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=44.3
Q ss_pred EEEecCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 265 ISVKCGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 265 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
|.||++. ++-.+.-+-|-..+|+.|...+++-..+--.+-.- +.|+-|.+|+.|- +.+|-+|+|.
T Consensus 7 i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~ 73 (77)
T 2bwf_A 7 IHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG----KILKDDQTVESYH--IQDGHSVHLV 73 (77)
T ss_dssp EEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEE
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECC----eEcCCCCCHHHcC--CCCCCEEEEE
Confidence 4555532 33345556788999999999999876554443332 3467788999985 4588888875
No 60
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=55.05 E-value=25 Score=26.14 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=45.7
Q ss_pred EEEecC---cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 265 ISVKCG---DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 265 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
|.||+- .++=.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|-+ +|-+|+|.+
T Consensus 8 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G----k~L~d~~tL~~~~i---~g~~i~l~~ 75 (90)
T 4dwf_A 8 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG----RVLQDDKKLQEYNV---GGKVIHLVE 75 (90)
T ss_dssp EEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGTC---TTEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----eECCCCCCHHHcCC---CCcEEEEEe
Confidence 556652 233345556788999999999999877665554432 34677889999976 488888764
No 61
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=54.64 E-value=19 Score=27.45 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=46.0
Q ss_pred eEEEEecCc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKCGD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||+|. ++-.+--+-|-..+|+.|....++-..+--.+-.- +.|+-|..|..|- +.+|-+|.|.+
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~y~--I~~gstI~lv~ 88 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAG----APLEDEATLGQCG--VEALTTLEVAG 88 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETT----EECCTTSBHHHHT--CCSSCEEEEEC
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 457788863 22233445678999999999998766554444332 3467788898884 56888888764
No 62
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.07 E-value=29 Score=24.82 Aligned_cols=67 Identities=12% Similarity=0.272 Sum_probs=46.3
Q ss_pred EEEEec--Cc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||. |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|+.|- +.+|-+|+|.+
T Consensus 9 ~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~~ 78 (81)
T 2dzi_A 9 QLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKG----KALADGKRLSDYS--IGPNSKLNLVV 78 (81)
T ss_dssp EEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETT----EECCTTSBGGGGT--CCSSBCCEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC----eECCCCCcHHHcC--CCCCCEEEEEE
Confidence 455653 32 45566777899999999999999876654444332 2366688999984 46788887753
No 63
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=52.74 E-value=29 Score=27.71 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=37.0
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEE
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHM 334 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (337)
++-++.-+-|-..+|+.|...+|+-..+--++-.. +.|+.+..|..|-+ .+|-+|++
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g----~~L~d~~tL~~~~i--~~~~~l~l 69 (152)
T 3b08_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYNI--QKESTLHL 69 (152)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGTC--CTTCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECC----eECcCcccHHHhcc--CCCCeeEE
Confidence 45556667889999999999999876654443332 23566777777732 34444443
No 64
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=52.61 E-value=38 Score=26.22 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=46.9
Q ss_pred EEEEec-C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKC-G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||. | .++-.+.-+-|-..+|+.|...+|+-..+--++-.- +.|+-|..|+.|- +.+|-+|.|..
T Consensus 27 ~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~g--I~~g~~I~l~~ 95 (101)
T 2klc_A 27 KVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAG----KILKDQDTLSQHG--IHDGLTVHLVI 95 (101)
T ss_dssp EEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETT----EEECTTCCTGGGT--CCTTCEEEEEE
T ss_pred EEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHcC--CCCCCEEEEEE
Confidence 456665 2 344556667899999999999999876655444332 3467788999985 56888888764
No 65
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.51 E-value=23 Score=26.17 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=47.9
Q ss_pred eEEEEec--C--ccee-eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKC--G--DYTR-RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~--~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||. | .++= .+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|+|.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~~ 80 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRG----KQLENGYTLFDYD--VGLNDIIQLLV 80 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETT----EECCSSSBHHHHT--CCTTCEEEEEE
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECC----eECCCCCCHHHCC--CCCCCEEEEEE
Confidence 4567776 5 3554 36667889999999999998876665554432 3466678888884 46788888764
No 66
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=49.78 E-value=57 Score=23.26 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=46.5
Q ss_pred EEEEec--Ccc--eee-ecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKC--GDY--TRR-IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~--~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||. |.- +=. +--+-|-..+|+.|....++-..+--++-.- +.|+-+..|+.|- +.+|-+|++.+
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 75 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRG----KQMEDGHTLFDYE--VRLNDTIQLLV 75 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTTTTT--CCTTCEEEEEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 356665 432 344 5566889999999999999876655444432 3466788899885 46888888864
No 67
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=49.75 E-value=62 Score=24.10 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=47.5
Q ss_pred EEEEe-cC--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVK-CG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.|| ++ .++=++.-+-|-..+|+.|...+|+-..+--++-.- +.|+-|..|+.|- +.+|-+|+|.+
T Consensus 19 ~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 88 (91)
T 3v6c_B 19 QIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 88 (91)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTCBTGGGT--CCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC----eECCCcCcHHHCC--CCCCCEEEEEE
Confidence 35555 22 234455566788999999999999887765554432 3477789999985 57888998864
No 68
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=47.51 E-value=30 Score=26.99 Aligned_cols=67 Identities=25% Similarity=0.366 Sum_probs=47.8
Q ss_pred EEEEecCcce--eeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKCGDYT--RRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||++.-+ -++.-+-|-..+|+.|...+|+-..+--++-.- +.|+-+..|+.| .+.+|-+|.|..
T Consensus 30 ~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~~--gI~~g~tI~lv~ 98 (101)
T 3m63_B 30 NIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG----KILKDDQTVESY--HIQDGHSVHLVK 98 (101)
T ss_dssp CEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETT----EECCTTSBTTTT--TCCTTEEEEECC
T ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECC----EECCCcCcHHHC--CCCCCCEEEEEe
Confidence 4677765433 344455678999999999999887766554432 456778899998 467888888753
No 69
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=47.09 E-value=40 Score=25.20 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=40.8
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..| .+.+|-+|.|.+
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~--~i~~g~~l~l~~ 71 (88)
T 4fbj_B 16 DIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADY--KILGGSVLHLVL 71 (88)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBTTTT--TCCTTCEEEEEC
T ss_pred EECCCCCHHHHHHHHHHHHCcChhHEEEEECC----eECCCCCcHHHc--CCCCCCEEEEEE
Confidence 34455688999999999999877665444332 346778899998 457888888764
No 70
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=46.81 E-value=40 Score=25.71 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=46.2
Q ss_pred EEEEec-C--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKC-G--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||. . .++=.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|+|.+
T Consensus 24 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~--i~~g~~i~l~~ 93 (98)
T 4hcn_B 24 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 93 (98)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTCBSGGGT--CCTTEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 355552 3 234345556688999999999999887765544432 3467788999985 57888888764
No 71
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=45.97 E-value=16 Score=27.15 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 019686 126 PTMCTDKWRNLLKEFKKTKH 145 (337)
Q Consensus 126 aeQCr~KWKNLKk~YKKiKd 145 (337)
...|+.||+||...|+.+-.
T Consensus 13 srk~rakfkn~lqh~r~vaa 32 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREVAA 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999853
No 72
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=45.26 E-value=35 Score=26.18 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=48.6
Q ss_pred ceEEEEecCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccC-CCccceEEeccCCceEEEee
Q 019686 262 GKVISVKCGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRD-MPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 262 g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 336 (337)
.--|.||+.. ++-.+--+-|-..+|+.|....|+-..+--++-.- +.|+-| ..|+.|- +.+|-+|.|.+
T Consensus 15 ~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~~tL~~yg--I~~gstl~lv~ 86 (94)
T 2kan_A 15 KIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG----IELADDYRNLNEYG--ITEFSEIVVFL 86 (94)
T ss_dssp CEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETT----EEECCTTSBHHHHT--CCTTEEEEEEE
T ss_pred CEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC----EECCCCcccHHHCC--CCCCCEEEEEE
Confidence 3457888754 66666677889999999999999876655444321 345556 8888885 46787887754
No 73
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=44.99 E-value=35 Score=26.44 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=46.6
Q ss_pred eEEEEec--CcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKC--GDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||+ |.++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|.|.+
T Consensus 23 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~yg--I~~gstI~l~~ 92 (100)
T 1yqb_A 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCG--VRDGLTVHLVI 92 (100)
T ss_dssp EEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBHHHHT--CCTTCEEEEEE
T ss_pred EEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHCC--CCCCCEEEEEE
Confidence 3466665 3355556667889999999999998866554444332 3466678888884 56788888754
No 74
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=44.61 E-value=38 Score=26.47 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=40.8
Q ss_pred ecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 276 IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+.-+-|-..+|+.|...+|+-..+--++-.- +.|+-|..|..| .+.+|-+|.|.+
T Consensus 18 v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~~--~i~~g~~i~lv~ 72 (106)
T 3m62_B 18 LEPSNTILETKTKLAQSISCEESQIKLIYSG----KVLQDSKTVSEC--GLKDGDQVVFMV 72 (106)
T ss_dssp CCTTSBHHHHHHHHHHTTTSCGGGCEEEETT----EECCTTSBTTTT--TCCTTCEEEEEC
T ss_pred ECCCCcHHHHHHHHHHHHCCChhhEEEEECC----EECCCcCCHHHc--CCCCCCEEEEEE
Confidence 3445678999999999999877766555432 346778899998 567888888764
No 75
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.79 E-value=58 Score=23.70 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=46.7
Q ss_pred ceEEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 262 GKVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 262 g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.--|.||. | .++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-|..|..|- +.+|-+|+|.+
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~G----k~L~d~~tL~~~~--i~~g~~i~l~~ 78 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG----QVLQDWLGLGIYG--IQDSDTLILSK 78 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETT----EECCSSSBHHHHT--CCTTEEEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECC----EEccCCCCHHHCC--CCCCCEEEEEE
Confidence 34566775 3 244456667889999999999998866655444332 2466678888884 46788887754
No 76
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=43.61 E-value=74 Score=22.96 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=43.6
Q ss_pred EEEEec--C-cceeeecccCCHHHHHHHHHHhh---cccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKC--G-DYTRRIGIDGTPDAIKEAIKSAF---GIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||. | .++-.+.-+-|-..+|+.|...| ++-..+--++-.- +.|+-|..|..|- +.+|-+|+|..
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~--i~~g~~i~l~~ 79 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG----KILSDDVPIRDYR--IDEKNFVVVMV 79 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETT----EECCTTSBGGGGC--CCTTSEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECC----EECcCCCCHHHcC--CCCCCEEEEEE
Confidence 356665 3 24455666788999999999974 4544443333221 3466688899984 56888888754
No 77
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.52 E-value=56 Score=24.74 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=39.1
Q ss_pred ceeeecccCCHHHHHHHHHHhh---cccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAF---GIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++-.+.-+-|-..+|+.|...+ |+-..+--++-.- +.|+-|..|+.|- +.+|-+|.|.+
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~G----k~L~D~~tL~~yg--I~~g~~i~l~~ 74 (95)
T 1uel_A 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG----KILNDDTALKEYK--IDEKNFVVVMV 74 (95)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT----EECCTTSBGGGGT--CCSSSEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECC----EECCCcCcHHHCC--CCCCCEEEEEE
Confidence 4445566788999999999985 4544443333221 3466678899884 56788887753
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=43.44 E-value=65 Score=25.63 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=49.0
Q ss_pred ceEEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 262 GKVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 262 g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
|..|.||. | .++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|++.+
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~i~l~~ 147 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 147 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 34566664 2 456667777889999999999988866665554432 3466678899884 56888888764
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=39.54 E-value=66 Score=26.80 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=44.2
Q ss_pred EEEEe-cCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 264 VISVK-CGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 264 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
-|.|| ++. ++=++.-+-|-..+|+.|...+|+-..+--++-.- +.|+.+..|..|- +.+|-+|+|.
T Consensus 22 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g----~~L~d~~tL~~~~--i~~~~~l~l~ 90 (172)
T 3u30_A 22 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLV 90 (172)
T ss_dssp EEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTGGGT--CCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECC----ccccccCCHhHcC--Ccccceeeee
Confidence 45566 443 44455566788999999999999987776555432 4477788898884 3445455443
No 80
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.16 E-value=66 Score=25.04 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCCCCcccceEEEEecCcc----eeeecc-----------cCCHHHHHHHHHHhh--cccccceeeccccchhhhhccc
Q 019686 253 NGGEGQSFGGKVISVKCGDY----TRRIGI-----------DGTPDAIKEAIKSAF--GIRTKRAFWLEDEDQIVRCIDR 315 (337)
Q Consensus 253 ~~~~~~~~~g~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 315 (337)
+|++...+..--|.||+..- +-.|-+ +-|-..+|+.|.... ++-..+...|.=.. +.|+-
T Consensus 3 ~~~~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~G---k~L~D 79 (107)
T 1x1m_A 3 SGSSGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCG---RKLKD 79 (107)
T ss_dssp SCSCCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETT---EECCT
T ss_pred CCCCCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECC---eECCC
Confidence 45555556666688887543 333442 267899999999988 87655511221111 24666
Q ss_pred CCCccceEEeccCCceEEEee
Q 019686 316 DMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+..|..|- +.+|-+|+|..
T Consensus 80 ~~tL~~y~--i~~g~~i~lv~ 98 (107)
T 1x1m_A 80 DQTLDFYG--IQPGSTVHVLR 98 (107)
T ss_dssp TCBHHHHT--CCTTCEEEEEE
T ss_pred CCcHHHcC--CCCCCEEEEEe
Confidence 78888884 56788888754
No 81
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=39.08 E-value=67 Score=25.08 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=42.4
Q ss_pred ceeeec-ccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 272 YTRRIG-IDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 272 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++-.+- .+-|-..+|+.|...+|+-..+--++-.- +.|+-+..|..|- +.+|-+|+|.+
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~G----k~L~D~~tL~~y~--I~~g~~l~l~~ 102 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKA----GFLKDNMSLAHYN--VGAGEILTLSL 102 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSS----SBCCTTSBTTTTT--CSSSCEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 344555 37799999999999999876665554432 3566788999985 56888888754
No 82
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.98 E-value=42 Score=25.95 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=43.4
Q ss_pred EEEEec--Cc-----ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccC-CCccceEEeccCCceEEEe
Q 019686 264 VISVKC--GD-----YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRD-MPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 264 ~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 335 (337)
-|.|+. |+ |+-.+.-+-|-..+|+.|...+++--.|-=++-.. +.|+-| ..|..|- +.+|-+|+|.
T Consensus 9 ~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~g----k~L~D~~~tL~~yg--I~~g~~l~l~ 82 (102)
T 1v5o_A 9 LITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYME----QLLTDDHCSLGSYG--LKDGDMVVLL 82 (102)
T ss_dssp EEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETT----EEECCSSSBHHHHT--CCTTEEEEEC
T ss_pred EEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECC----EECCCCcccHHHCC--CCCCCEEEEE
Confidence 466766 53 33345556788999999999999876554333222 345555 6888884 4577777764
No 83
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=38.60 E-value=64 Score=24.13 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 019686 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKW 133 (337)
Q Consensus 73 ~p~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KW 133 (337)
+..+....||++.-..++++....- ..+..++.|.+.|...| .|..|++.-.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-------~~~AtPk~Il~~M~v~g--LT~~~VkSHL 53 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-------VERAVPKKILDLMNVDK--LTRENVASHL 53 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-------TTTCCHHHHHHHHCCTT--CCHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-------CCCCCcHHHHHHcCCCC--CCHHHHHHHH
Confidence 4567788999999999999887532 23466788888886544 6777777654
No 84
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.42 E-value=50 Score=24.81 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=45.6
Q ss_pred eEEEEec--Ccc-eeeec--ccCCHHHHHHHHHHhh--cccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 263 KVISVKC--GDY-TRRIG--IDGTPDAIKEAIKSAF--GIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 263 ~~~~~~~--~~~-~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
--|.||+ |.+ +-.|- -+-|-..+|+.|...+ ++-..|-=++-. =+.|+-|..|..|--.+.+|-+|+|.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~----Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS----GKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET----TEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC----CEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 4577887 432 34444 5678999999999998 776554433322 13465667888883345788888875
Q ss_pred e
Q 019686 336 F 336 (337)
Q Consensus 336 ~ 336 (337)
+
T Consensus 84 ~ 84 (93)
T 1wgd_A 84 C 84 (93)
T ss_dssp C
T ss_pred e
Confidence 3
No 85
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=36.43 E-value=77 Score=24.77 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=47.4
Q ss_pred eEEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||. | .++-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|+|.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~g--I~~gs~I~l~~ 106 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 106 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETT----EECCSSCBTTTTT--CCTTCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 3466665 2 244456667889999999999999876665554432 3466688999885 45788888764
No 86
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.43 E-value=1.3e+02 Score=22.91 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=43.2
Q ss_pred eEEEEecCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 263 KVISVKCGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 263 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
--|.|||+. |+-.+--+-|-..+|+.|....++=..|-=.+- ... .|| |.+|..|- +.+|-+|+|.
T Consensus 18 ~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk---~Ld-d~tL~~~~--i~~g~~i~lv 85 (95)
T 1v86_A 18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGL---VPE-DKTLREIK--VTSGAKIMVV 85 (95)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-SSB---CCS-SSBHHHHC--CCTTEEEEEC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCe---eCC-cCcHHHCC--CCCCCEEEEE
Confidence 346788765 334455567889999999999997554433222 222 254 55888884 4678888764
No 87
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=35.41 E-value=57 Score=24.57 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=42.7
Q ss_pred EEEecCcceeee-cc--cCCHHHHHHHHHHhhcccccceeec---cccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 265 ISVKCGDYTRRI-GI--DGTPDAIKEAIKSAFGIRTKRAFWL---EDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 265 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
|.|||+.-+-.| -+ +-|...+|+.|....|+-..|-=.+ -. + +-|+-|.+|..|- +.+|-+|.|.
T Consensus 10 i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~--G--k~L~D~~~L~~~~--i~~g~~l~l~ 80 (90)
T 1v5t_A 10 IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVK--G--KPAENDVKLGALK--LKPNTKIMMM 80 (90)
T ss_dssp EEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEET--T--EECCTTSBHHHHT--CCTTEEEEEE
T ss_pred EEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccC--C--cCcCCCCCHHHcC--CCCCCEEEEE
Confidence 678886544434 33 5788999999999999855443222 11 1 2356678888874 5678887764
No 88
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=35.28 E-value=2.3 Score=33.12 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 019686 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDK 132 (337)
Q Consensus 76 ~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~K 132 (337)
..+..||.+|-++|-..-. .|. +.....|+.||+.+- .||..+|+..
T Consensus 18 ~ss~~WT~eE~K~FE~ALa----~yp--~~tpdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALS----FTN--KDTPDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp ----CCCTTHHHHHHHHTS----SSC--SSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHH----HCC--CCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence 3467899999988765543 232 233577999997764 3899999753
No 89
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=35.05 E-value=65 Score=23.94 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=45.3
Q ss_pred EEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 265 ISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 265 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
|.||. | .++-.+.-+-|-..+|+.|....++-..+--++-.- +.|+-|..|..|- +.+|-+|.|.+
T Consensus 7 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~~--I~~g~~i~l~~ 75 (88)
T 2hj8_A 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG----KPLEDQLPLGEYG--LKPLSTVFMNL 75 (88)
T ss_dssp EEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSS----SCCCTTSBHHHHH--CSTTCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 55664 3 234455667789999999999998876655444332 2466788898885 56888888764
No 90
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=34.82 E-value=87 Score=24.57 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=47.7
Q ss_pred eEEEEec-C--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKC-G--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||. . .++=++.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|+|.+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~~g--I~~gs~I~l~~ 106 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 106 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTTTTT--CCTTCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 3456663 2 244455566788999999999999977766555432 3467788999985 57888888764
No 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.80 E-value=82 Score=23.58 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=45.9
Q ss_pred eEEEEecC--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 263 KVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||+- .++-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|+|.+
T Consensus 18 m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 87 (96)
T 1wx8_A 18 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTG----KILRDQDILSQRG--ILDGSTVHVVV 87 (96)
T ss_dssp EEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETT----EECCTTSCHHHHT--CCTTEEEECCB
T ss_pred EEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----EECCCcCCHHHCC--CCCCCEEEEEE
Confidence 34666662 345566667899999999999998766554433321 3466678888874 45777887653
No 92
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=32.67 E-value=72 Score=26.87 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHH----cC--------CC-CCHHHHHHHHHHHHHH
Q 019686 82 VQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRE----KG--------FD-RSPTMCTDKWRNLLKE 139 (337)
Q Consensus 82 T~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~e----kG--------y~-RTaeQCr~KWKNLKk~ 139 (337)
|-+|+..|+.....+...+.........=..|+..|.+ .| |. .|......||++|.+-
T Consensus 43 sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 43 TIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 57899999988877666665433223333333444443 34 33 5789999999999865
No 93
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.85 E-value=74 Score=23.68 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=40.4
Q ss_pred eeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 274 RRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|.|.+
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 80 (88)
T 1sif_A 24 VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 80 (88)
T ss_dssp EECCTTSBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBSGGGT--CCTTCEEEEEC
T ss_pred EEECCCChHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 344556788999999999999876655444432 3466688999985 45788887753
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=31.14 E-value=1.3e+02 Score=24.38 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=41.5
Q ss_pred EEEe-cCc--ceeeecccCCHHHHHHHHHHhhcccccceeec-cccchhhhhcccCCCccceEEeccCCceEEE
Q 019686 265 ISVK-CGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWL-EDEDQIVRCIDRDMPVGNYTLHLDEGKLLHM 334 (337)
Q Consensus 265 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (337)
|.|| ++. ++=.+--+-|-..+|+.|...+|+-..+--++ -+.. +.|+-+..|..|- +.+|-+|++
T Consensus 5 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g---~~L~d~~tL~~y~--i~~~~~l~l 73 (159)
T 3rt3_B 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG---VALQDRVPLASQG--LGPGSTVLL 73 (159)
T ss_dssp EEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC---CBCCTTSCGGGGT--CCTTCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC---CCCCCCCCHHHcC--CCCCCEEEE
Confidence 4455 333 33344456689999999999999988765555 3212 2367788888883 344444444
No 95
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=30.03 E-value=56 Score=24.91 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=46.2
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccce-eeccccc--hhhhhcccCCCccceEEeccCCceEEEe
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRA-FWLEDED--QIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
+.+||...-|-+.+|+-|...+|+=...- -.+.|.+ -+-+-||-+..|+.|-+ .+|.+|||.
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i--~~g~~ihlv 81 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQC--RDEFVIHVV 81 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTC--CTTCEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCC--CCCCEEEEE
Confidence 35899999999999999999999864332 1223333 23456888899999954 799999985
No 96
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.87 E-value=56 Score=25.36 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=45.2
Q ss_pred EEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 264 VISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 264 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
-|.||+ | .++-.+.-+-|-..+|+.|....|+-..+--++-.- +.|+-+..|+.|- +.+|-+|+|.+
T Consensus 25 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~yg--I~~g~ti~lv~ 94 (106)
T 1ttn_A 25 QLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSG----RPLTDKMKFEELK--IPKDYVVQVIV 94 (106)
T ss_dssp EEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETT----EECCTTSHHHHCC--CSSSCEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 356664 3 233445556778999999999988866554444332 3466788899885 56888888864
No 97
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=28.71 E-value=1.2e+02 Score=22.40 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=44.9
Q ss_pred eEEEEecCcce--eeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 263 KVISVKCGDYT--RRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 263 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
.++.++|+.-+ -.+--+-|-..+|+.|....++-..|--++-.- +.|+-+..|+.|- +.+|-+|.|.
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~l~l~ 81 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKG----KVLVETSTLKQSD--VGSGAKLMLM 81 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETT----EECCTTCBTTTTT--CCTTEEEEEE
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECC----eECCCcCCHHHCC--CCCCCEEEEE
Confidence 34455566433 344456788999999999999876655444332 3467788999985 4577777764
No 98
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=27.45 E-value=1e+02 Score=24.65 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=46.2
Q ss_pred cceeeecccCCHHHHHHHHHHhhcccccceeecccc--c-hhhhh-cccCCCccceEEeccCCceEEEee
Q 019686 271 DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDE--D-QIVRC-IDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.++++|--+-|-..+|+.|...+|+=..+- +|.-. + .++-. ++-+.+|+.|-+ .+|-+|+|..
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~q-rL~~~g~~~~~~~~l~~D~~tL~~y~i--~~g~~ihvvd 85 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSM-RIQLFDGDDQLKGELTDGAKSLKDLGV--RDGYRIHAVD 85 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTE-EEEEECSSSSEEEECCCCSSBTTTTTC--CSSEEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHe-EEEEecCCCccccccCCCcCCHHHCCC--CCCCEEEEEe
Confidence 488899999999999999999999865542 23222 2 23323 466889999964 6899998864
No 99
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=26.88 E-value=15 Score=30.06 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=35.5
Q ss_pred cceEEEEecCcceeeecccCCH--HHHHHHHHHhhcccccceee-ccccch
Q 019686 261 GGKVISVKCGDYTRRIGIDGTP--DAIKEAIKSAFGIRTKRAFW-LEDEDQ 308 (337)
Q Consensus 261 ~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (337)
.+.++.|..-||....|++.+. ..||+|+++.+ +|.|+ +++++.
T Consensus 42 ~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~----~r~~~~i~~~~~ 88 (132)
T 1hkq_A 42 KDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLF----NRDIRRYVKGKV 88 (132)
T ss_dssp GGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHH----TCCEEEEETTEE
T ss_pred CCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHh----hCeEEEEecCCc
Confidence 4678999999999999998654 67888888877 57888 888754
No 100
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.93 E-value=1.2e+02 Score=23.22 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=43.0
Q ss_pred EEEEecCccee---eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEe
Q 019686 264 VISVKCGDYTR---RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 264 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
-|.|||+.-+- .+.-+-|...+|+.|....|+=-.|-=.+.. - +-|+-| .|..| .+.+|-+|.|.
T Consensus 9 ~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~-G---k~L~D~-tL~~~--~I~~g~~i~l~ 76 (96)
T 1wgg_A 9 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK-G---GTLKDD-DWGNI--KMKNGMTVLMM 76 (96)
T ss_dssp EEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET-T---EECCSS-CCCSC--CCCSSCEEECC
T ss_pred EEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC-C---cCCCCC-CHHHC--CCCCCCEEEEE
Confidence 47788764333 3344578899999999999986555433321 1 245666 88888 45678887764
No 101
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.50 E-value=1.2e+02 Score=22.90 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=43.6
Q ss_pred cceeeecccCCHHHHHHHHHHhhcccccceeecc--ccc-hhhhh-cccCCCccceEEeccCCceEEEe
Q 019686 271 DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLE--DED-QIVRC-IDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
.+++++--+-|-..+|+-|...+|+=..+ .+|. +.+ .++.. ++-+.+|+.|- +.+|-+|+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~-qrL~~~~~~g~~~~~l~~D~~tL~~y~--i~~g~~l~v~ 85 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASC-MELELYGADDKFYSKLDQEDALLGSYP--VDDGCRIHVI 85 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTT-CBCEEECSSSCEEEECCCSSSBTTSSS--CCTTCEEEEB
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHH-eEEEEeCCCCccccccCCCcCCHhHCC--CCCCCEEEEE
Confidence 47889999999999999999999975433 2222 211 22323 46688999986 4678888775
No 102
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.21 E-value=89 Score=23.38 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=40.1
Q ss_pred eEEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccC-CCccceEEeccCCceEEEee
Q 019686 263 KVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRD-MPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 263 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 336 (337)
--|.||. | .++-++.-+-|-..+|+.|.... ..+ ..|.-.. +.|+-| ..|..| .+.+|-+|+|.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~-qrLi~~G---k~L~D~~~tL~~y--~i~~g~~i~l~~ 76 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQ-MKLIYQG---RLLQDPARTLSSL--NITNNCVIHCHR 76 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTT-CEEEETT---EECCCSSCBTTTT--TCCTTEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCc-EEEEECC---EEccCCcCCHHHc--CCCCCCEEEEEE
Confidence 3466664 2 34556677788999999997654 111 1111111 346556 889888 457888888764
No 103
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=22.99 E-value=95 Score=24.24 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=45.3
Q ss_pred cceeeecccCCHHHHHHHHHHhhcccccceeec--cccc-hhhhh-cccCCCccceEEeccCCceEEEe
Q 019686 271 DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWL--EDED-QIVRC-IDRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
.+++||--+-|-+.+|+-|...+|+=... -+| .+.+ .++-. +|-+.+|+.|- +.+|-+|+|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~-QrLi~~g~~g~~~~~L~~D~~tL~~Y~--I~~g~~Ihlv 93 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNS-MALELYDDSGSKVAVLSDDSRPLGFFS--PFDGFRLHII 93 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTS-EEEEEECSSSCBCCCSSGGGSCHHHHC--CCSCCEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHH-eEEEEecCCCcccceecCCcCCHHHCC--CCCCCEEEEE
Confidence 48899999999999999999999974332 222 2221 23334 47778999996 5789999875
No 104
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=28.52 E-value=18 Score=25.83 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=38.9
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
++-.+.-+-|-..+|+.|....++-..+--++-.- +.|+-|..|+.|- +.+|-+|++.+
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~~ 71 (76)
T 3b1l_X 13 FPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAG----KELPNHLTVQNCD--LEQQSIVHIVQ 71 (76)
Confidence 33445556788899999998888765543333321 3466688899885 45777777653
No 105
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP: b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A 1usz_A 1ut2_A
Probab=22.77 E-value=22 Score=30.80 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=15.2
Q ss_pred cCCCccceEEeccCCceE
Q 019686 315 RDMPVGNYTLHLDEGKLL 332 (337)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (337)
-+-|-|+|||+||-|.=+
T Consensus 130 t~~ptG~YTLnL~GGyW~ 147 (148)
T 1ut1_A 130 TNTPPGNYTLTLTGGYWA 147 (148)
T ss_dssp TTCCSEEEEEEEEEEEEE
T ss_pred ccCCCccEEEEecccEec
Confidence 478999999999988644
No 106
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=22.74 E-value=67 Score=25.25 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHH
Q 019686 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCT 130 (337)
Q Consensus 77 R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr 130 (337)
....||.+|..++.+.+..+ .+-|..|++.|. .||..||-
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l~----~Kt~~~cV 81 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH----------PKNFGLIASFLE----RKTVAECV 81 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTCT----TCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHcC----CCCHHHHH
Confidence 46789999998888777653 234777866543 58999996
No 107
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=22.48 E-value=1.3e+02 Score=23.64 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=45.4
Q ss_pred ccceEEEEecCcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 260 FGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
+.|+.+.+. |--+-|-..+|+.|....|+-..+--++-.- +.|+-+..|+.|- +.+|-+|+|.+
T Consensus 43 L~G~~~~l~-------v~~~~TV~~LK~~I~~~~gip~~~QrL~~~G----k~L~D~~tL~~y~--i~~g~~i~lv~ 106 (115)
T 1we7_A 43 LNGQGLVFT-------LPLTDQVSVIKVKIHEATGMPAGKQKLQYEG----IFIKDSNSLAYYN--MASGAVIHLAL 106 (115)
T ss_dssp CSSEEEEEE-------ECSCSBTHHHHHHHHHHSSCCTTTEEEEETT----EEECTTSBHHHHT--CCSSCEEEEEE
T ss_pred cCCeEEEEE-------ECCCCCHHHHHHHHHHHHCCChHHEEEEECC----EECCCCCCHHHCC--CCCCCEEEEEE
Confidence 557776654 4456788999999999999876665554432 2466678899885 45788888764
No 108
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=22.46 E-value=1.8e+02 Score=23.52 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=41.6
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.+.-+-|-..+|+.|....|+-..+--++-.- +.|+-+..|+.|- +.+|-+|++.+
T Consensus 97 ~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G----~~L~d~~tL~~y~--i~~g~~l~l~~ 152 (159)
T 3rt3_B 97 EVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG----KPLEDQLPLGEYG--LKPLSTVFMNL 152 (159)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHHCCCHHHEEEEECC----eecCCCCCHHHcC--CCCCCEEEEEE
Confidence 34456788999999999999876665555433 4567788999994 57888888764
No 109
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=22.02 E-value=1.6e+02 Score=22.87 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=48.7
Q ss_pred eEEEEecCcceeeeccc---CCHHHHHHHHHHhhcccccceeeccccch------------hhhhcccCCCccceEEecc
Q 019686 263 KVISVKCGDYTRRIGID---GTPDAIKEAIKSAFGIRTKRAFWLEDEDQ------------IVRCIDRDMPVGNYTLHLD 327 (337)
Q Consensus 263 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 327 (337)
-+|+||--+=+.||-++ -|-..+|+.|...+++=.. ..+|.=... +...++-+-+|..|-| .
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~-~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi--~ 84 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIH-NQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL--A 84 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTT-TCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC--C
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcc-cCEEEECCccccccCccccccccccCCCCCCHHHCCC--C
Confidence 46888876667788888 5888999999999987332 234432222 1122578889999864 5
Q ss_pred CCceEEEee
Q 019686 328 EGKLLHMWF 336 (337)
Q Consensus 328 ~~~~~~~~~ 336 (337)
+|-+|+|..
T Consensus 85 ~G~~L~l~~ 93 (107)
T 1wf9_A 85 HGSMVYLAY 93 (107)
T ss_dssp TTCEEECCC
T ss_pred CCCEEEEEe
Confidence 888887753
No 110
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=21.90 E-value=1.9e+02 Score=24.50 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=41.0
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEee
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (337)
.+--+-|-..+|+.|...+++-..+--++-.- +.|+-+..|+.| .+.+|-+|+|.+
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~y--~I~~gstI~Lvl 71 (169)
T 3l0w_B 16 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDY--NIQKESTLHLVL 71 (169)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT----EECCTTSBGGGG--TCCTTCEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC----ccccCcCcHHHc--CCCCCCEEEEEE
Confidence 34456688999999999999877766554433 336778899998 457787887754
No 111
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.68 E-value=90 Score=23.68 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=44.1
Q ss_pred cceeeecccCCHHHHHHHHHHhhccccc--ceeecccc-ch-hhhhc-ccCCCccceEEeccCCceEEEe
Q 019686 271 DYTRRIGIDGTPDAIKEAIKSAFGIRTK--RAFWLEDE-DQ-IVRCI-DRDMPVGNYTLHLDEGKLLHMW 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (337)
-..+|+-.+=|-..+|+-|...||+=.. |-| +.++ +. .+-.| |-+.+|+.|-+ .+|-+|+|-
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~-~~~~~~~~~~~~L~~d~~~L~~y~i--~~G~~I~V~ 90 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS-YESSKMPGREIELENDLQPLQFYSV--ENGDCLLVR 90 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE-EECTTSCSCEEECCCSSSBSGGGTC--CTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEE-EEcCCCCceeeccCCCcccHhhcCC--CCCCEEEEE
Confidence 4568899999999999999999996432 333 3332 22 33335 66678999976 599999874
No 112
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=20.44 E-value=22 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=19.8
Q ss_pred ecccCCHHHHHHHHHHhhcccccceee-ccccc
Q 019686 276 IGIDGTPDAIKEAIKSAFGIRTKRAFW-LEDED 307 (337)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 307 (337)
.=+||.++ ++|+.. .|-+-||| |-|++
T Consensus 17 fVaeGgpe--~~~~a~---~k~nPaf~FL~D~~ 44 (66)
T 1x4p_A 17 RVIEGSLS--PKERTL---LKEDPAYWFLSDEN 44 (66)
T ss_dssp HHHHTCSC--HHHHHH---HHHSGGGCTTTCCS
T ss_pred HHHccCCc--HHHHHH---cccCCceeeeeCCC
Confidence 34789998 566554 89999999 55655
No 113
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.44 E-value=1.6e+02 Score=21.73 Aligned_cols=67 Identities=6% Similarity=0.210 Sum_probs=41.3
Q ss_pred eEEEEecCcceeeeccc-------CCHHHHHHHHHHhhcccccceeeccccchhhhhcc-cCCCccceEEeccCCceEEE
Q 019686 263 KVISVKCGDYTRRIGID-------GTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCID-RDMPVGNYTLHLDEGKLLHM 334 (337)
Q Consensus 263 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 334 (337)
--|.||++.-+-.|-++ -|-..+|+.|....|+-..|--.+-. . +.|+ .+.+|..|- +.+|-+|+|
T Consensus 8 ~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~-G---k~L~D~~~~L~~~~--i~~g~~i~l 81 (92)
T 1wxv_A 8 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK-G---KSLKEMETPLSALG--IQDGCRVML 81 (92)
T ss_dssp EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET-T---EEECCSSSBHHHHT--CCSSEEEEE
T ss_pred EEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC-C---eecCCCcccHHHCC--CCCCCEEEE
Confidence 44778886534344443 56799999999998875444322221 1 1233 366788874 467778776
Q ss_pred e
Q 019686 335 W 335 (337)
Q Consensus 335 ~ 335 (337)
.
T Consensus 82 ~ 82 (92)
T 1wxv_A 82 I 82 (92)
T ss_dssp E
T ss_pred E
Confidence 4
No 114
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=20.40 E-value=1.8e+02 Score=21.50 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=39.5
Q ss_pred EEEecCcceeeec---ccCCHHHHHHHHHHhhcccccceeecccc-chhhhhc---ccCCCccceEEeccCCceEEE
Q 019686 265 ISVKCGDYTRRIG---IDGTPDAIKEAIKSAFGIRTKRAFWLEDE-DQIVRCI---DRDMPVGNYTLHLDEGKLLHM 334 (337)
Q Consensus 265 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 334 (337)
|.||+-+=..+|- -+-|-..+|++|...+++-..| +.|--- .. +.| |.+.+|..|-| ..|-+|.|
T Consensus 3 i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~-qrL~~~~p~--k~l~l~~~~~tL~~~gl--~~g~~l~v 74 (86)
T 2kzr_A 3 VRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGS-QRILVGYPP--ECLDLSDRDITLGDLPI--QSGDMLIV 74 (86)
T ss_dssp EEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTT-CCCEESSCC--CCCCCCCSSCBTTTSSC--CTTCEEEC
T ss_pred EEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccc-eEEEeCCCC--cccccCCCCCCHHHcCC--CCCCEEEE
Confidence 5666655444444 3578899999999998874333 222211 11 233 26788988854 46766654
No 115
>1rxl_A AFAE-DSC, afimbrial adhesin AFA-III, AFA-III, AFAE-3; DAF, afimbrial sheath, DAEC, UPEC, IG-like domain, donor strand complemented; NMR {Escherichia coli} SCOP: b.2.3.6 PDB: 2ixq_B 2ver_A*
Probab=20.33 E-value=25 Score=30.70 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=15.0
Q ss_pred cCCCccceEEeccCCceE
Q 019686 315 RDMPVGNYTLHLDEGKLL 332 (337)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (337)
-+-|-|+|||+||-|.=+
T Consensus 118 t~~ptG~YTLnL~GGyW~ 135 (156)
T 1rxl_A 118 TNTPPGNYTLTLTGGYWA 135 (156)
T ss_dssp CCCSCCEEEEEEEEEEEC
T ss_pred ccCCCccEEEEecccEee
Confidence 478999999999987544
No 116
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=20.12 E-value=1.1e+02 Score=24.53 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=43.1
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCccceEEeccCCceEEEeeC
Q 019686 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL 337 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (337)
.+-=+-|-..+|+.|...||+-..+-=|+--.. .++-+..|..|-++ .+|-+|+|.++
T Consensus 42 ~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggk----ll~D~~TL~~ygI~-~~G~t~hL~l~ 99 (105)
T 4dbg_A 42 TVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQR----LARDQETLHSHGVR-QNGDSAYLYLL 99 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE----EECTTCBTGGGTCC-STTCEEEEEEC
T ss_pred EECCcChHHHHHHHHHHHhCCCHHHEEEeccCe----EccCcCcHHHcCCC-CCCCEEEEEEE
Confidence 334456889999999999999887665875433 45668889998654 57888888764
Done!