BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019688
         (337 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
          Length = 382

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 175 GRYLFHPSNQVWKLITSYYKKYLADAEE-RVGIQIRIFHKNSSPFQQVMDQILSCTDKEK 233
           G +LF P   + +++   +  Y+ D E  R  + I +FH+  +   Q M  I  CT    
Sbjct: 275 GAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISI--CT---- 328

Query: 234 LLPQVDMGKSIVAPFGKGKSK---AVLITSLIPSYYEKMKNMYLKHPT 278
                       A  GK + +   A+L+  L   +YEKMK   L+H +
Sbjct: 329 -----------AALIGKEERELPPAILL--LYSGWYEKMKQRVLQHAS 363


>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae
 pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
 pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
           From Saccharomyces Cerevisiae Complexed With Its
           Substrate N-Acetylglutamate
          Length = 464

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 88  YGNLLKKNKISDSTELLPTHLYLYLCNDYDHHDELFFCDQDQTILRNIPWLIMKSNLYFL 147
           YG  LK  +I +  + LP    + + N  D   ELF      T++R    L+ +S++   
Sbjct: 255 YGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGYKLVKRSSIGEF 314

Query: 148 PSLFLMSSFEEELDKLFPDKEMVFHHLGRYL 178
           PS   +    +    +   KE V  +L RYL
Sbjct: 315 PSADALRKALQRDAGISSGKESVASYL-RYL 344


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,291,697
Number of Sequences: 62578
Number of extensions: 429087
Number of successful extensions: 765
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 2
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)