Query 019688
Match_columns 337
No_of_seqs 117 out of 163
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03254 XG_FTase: Xyloglucan 100.0 5E-140 1E-144 1052.1 30.2 333 3-335 102-436 (476)
2 PF05830 NodZ: Nodulation prot 99.9 1.3E-21 2.9E-26 187.9 13.7 260 12-336 2-296 (321)
3 PF10250 O-FucT: GDP-fucose pr 98.6 4.7E-07 1E-11 87.5 11.3 146 174-330 169-334 (351)
4 PF01531 Glyco_transf_11: Glyc 97.8 5.9E-05 1.3E-09 72.8 8.0 97 199-336 161-267 (298)
5 KOG3705 Glycoprotein 6-alpha-L 96.3 0.0037 8.1E-08 63.3 4.3 147 157-326 318-475 (580)
6 KOG3849 GDP-fucose protein O-f 86.8 19 0.00042 35.6 13.4 286 7-328 24-357 (386)
7 cd00550 ArsA_ATPase Oxyanion-t 58.5 15 0.00034 34.5 4.6 48 13-60 1-50 (254)
8 PF02374 ArsA_ATPase: Anion-tr 58.0 13 0.00027 36.4 4.0 50 13-62 2-53 (305)
9 PRK10014 DNA-binding transcrip 36.2 1.2E+02 0.0025 28.7 6.8 95 218-323 34-128 (342)
10 PF13614 AAA_31: AAA domain; P 30.3 93 0.002 26.0 4.6 35 15-49 4-38 (157)
11 COG0003 ArsA Predicted ATPase 29.5 93 0.002 31.0 5.0 53 12-64 2-56 (322)
12 PF07199 DUF1411: Protein of u 27.9 79 0.0017 29.5 3.9 33 13-45 3-36 (194)
13 TIGR01601 PYST-C1 Plasmodium y 26.6 23 0.0005 28.6 0.2 16 25-40 3-18 (82)
14 TIGR01481 ccpA catabolite cont 25.6 1.8E+02 0.004 27.2 6.1 95 218-323 29-123 (329)
15 cd02145 BluB Subfamily of the 25.1 1.7E+02 0.0036 26.0 5.5 51 208-273 10-60 (196)
16 PF07841 DM4_12: DM4/DM12 fami 24.6 43 0.00093 26.2 1.4 37 162-199 33-69 (82)
17 COG1051 ADP-ribose pyrophospha 24.2 53 0.0011 28.5 2.0 27 40-74 20-46 (145)
18 PF04312 DUF460: Protein of un 24.0 93 0.002 27.6 3.4 47 253-308 76-136 (138)
19 PF05322 NinE: NINE Protein; 22.9 25 0.00054 26.7 -0.2 12 323-334 36-47 (60)
20 cd02036 MinD Bacterial cell di 22.4 1.7E+02 0.0036 24.8 4.8 34 15-48 3-36 (179)
21 cd02136 Nitroreductase Nitrore 21.5 2.3E+02 0.005 24.4 5.5 22 208-230 11-32 (178)
22 PRK11303 DNA-binding transcrip 20.2 3E+02 0.0065 25.7 6.4 95 219-324 32-126 (328)
23 PLN02699 Bifunctional molybdop 20.2 2.1E+02 0.0047 31.2 6.0 72 251-329 458-538 (659)
No 1
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=100.00 E-value=5.2e-140 Score=1052.12 Aligned_cols=333 Identities=56% Similarity=0.993 Sum_probs=320.7
Q ss_pred CCCCCCCCCceEEEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeCCCccccccCCCCCCCCcCCCCCCCcccccccCCC
Q 019688 3 SGQNDSSSECRYFVWIARAGLGNRILSIASAFLYPILTNRVLLINEEPEMANLFCEPFPNATWLLPKDFPFMYRISRFKP 82 (337)
Q Consensus 3 ~~~~~~~~~CkYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~~~~~~LFCEPFpgssWlLP~dFp~~~~~~~~~~ 82 (337)
||+++++++||||||++++||||||||||||||||||||||||||+++||++|||||||||||+||+|||+.+++.+++.
T Consensus 102 s~~~~~~~~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~ 181 (476)
T PF03254_consen 102 SGHSDGTSECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQ 181 (476)
T ss_pred ccCCCCCCCCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCC
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999987889999
Q ss_pred CCCcchHhHhhcCCCCCCCCCCCcEEEEEeccCCCCCCcccccccchhhccCcCEEEEecCcccccccccccccHHHHhh
Q 019688 83 NYPKSYGNLLKKNKISDSTELLPTHLYLYLCNDYDHHDELFFCDQDQTILRNIPWLIMKSNLYFLPSLFLMSSFEEELDK 162 (337)
Q Consensus 83 ~~~~s~g~ml~~~~~~~~~~~~p~~~yl~L~~~~~~~d~~ffCd~~q~~l~~v~Wl~~~sd~YfvP~Lf~~P~f~~eL~~ 162 (337)
++++|||||++|+.++++...+|+|+|+||.|+++++|++||||++|++|+|||||+|+||+||||+||++|+|++||++
T Consensus 182 ~~~~sygnml~~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~f~~eL~~ 261 (476)
T PF03254_consen 182 ESAESYGNMLKNKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPSFRPELDR 261 (476)
T ss_pred CchHHHHHHHhcCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchHHHHHHHH
Confidence 99999999999999988766799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEecCCCCchHHHHHHHHHHhhhcCCCCCCC-CC
Q 019688 163 LFPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSSPFQQVMDQILSCTDKEKLLPQVD-MG 241 (337)
Q Consensus 163 lFP~k~~vFhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f~~~~~p~~~~~~qi~~C~~~e~lLP~v~-~~ 241 (337)
|||+||+||||||||||||+|+|||+|+|||++|||+||+|||||||+|+.+++|+|+++|||++|+++|||||++. ++
T Consensus 262 lFP~k~tvFhhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e~LLP~v~~~~ 341 (476)
T PF03254_consen 262 LFPEKDTVFHHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQEKLLPEVVDTQ 341 (476)
T ss_pred hcCChhHHHHHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999994 34
Q ss_pred CC-ccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCcee
Q 019688 242 KS-IVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACF 320 (337)
Q Consensus 242 ~~-~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LV 320 (337)
.+ ++++.++.++||||||||+++|||+||+|||+++|++||+|+||||||||+|++|+++|||||||||||||+||+||
T Consensus 342 ~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LV 421 (476)
T PF03254_consen 342 EPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLV 421 (476)
T ss_pred cccccccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceE
Confidence 44 45677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCccccccccccc
Q 019688 321 SHKRRVYIRLCGTRS 335 (337)
Q Consensus 321 tS~~STFG~~a~~~~ 335 (337)
||+||||||||.++.
T Consensus 422 TS~~STFGYVAqgLg 436 (476)
T PF03254_consen 422 TSGWSTFGYVAQGLG 436 (476)
T ss_pred ecCCCCchhHHHhhc
Confidence 999999999998864
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.87 E-value=1.3e-21 Score=187.90 Aligned_cols=260 Identities=20% Similarity=0.310 Sum_probs=139.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeCCCccccccCCCCCCCCcCCCCCCCcccccccCCCCCCcchHhH
Q 019688 12 CRYFVWIARAGLGNRILSIASAFLYPILTNRVLLINEEPEMANLFCEPFPNATWLLPKDFPFMYRISRFKPNYPKSYGNL 91 (337)
Q Consensus 12 CkYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~~~~~~LFCEPFpgssWlLP~dFp~~~~~~~~~~~~~~s~g~m 91 (337)
-||||..+-.||||++.||+||--||==|+|.|+|||+++ -..-+||-| .||.- +.... .--|.+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s--~~~~~~f~n-------~f~~f--fepv~----~i~~~~ 66 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGS--CYLDQPFTN-------AFPVF--FEPVE----DIAGVR 66 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT---TT-SSTTSB-------SHHHH--B---S----EETTEE
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCc--eecCCcccc-------cCCcc--cchhh----hhcCce
Confidence 3899999999999999999999999999999999999875 122345533 23321 11110 001222
Q ss_pred hh-cCCCCCCC---CCCCcEEEEEeccCCC-CCCcccccccchhhccCcCEEEEecCcccccccccccccHHHHhhcCCC
Q 019688 92 LK-KNKISDST---ELLPTHLYLYLCNDYD-HHDELFFCDQDQTILRNIPWLIMKSNLYFLPSLFLMSSFEEELDKLFPD 166 (337)
Q Consensus 92 l~-~~~~~~~~---~~~p~~~yl~L~~~~~-~~d~~ffCd~~q~~l~~v~Wl~~~sd~YfvP~Lf~~P~f~~eL~~lFP~ 166 (337)
+. +..++.-+ .-.|.+ +. ......+|++.|-+ +=++||+.||--
T Consensus 67 ~~~~d~i~~~~~~g~~fp~~--------w~~p~~~~~~~pd~qi~-----------------------re~d~l~~lf~~ 115 (321)
T PF05830_consen 67 VICDDRINQFSFPGPFFPAW--------WNKPSIDCVYRPDEQIF-----------------------RERDELRQLFQS 115 (321)
T ss_dssp EE-SGGGGT----SSEESGG--------GGS-GGGGS---HHHHH-----------------------HHHHHHHHHHHS
T ss_pred eEecchhhhhcCCCCcChhH--------HhCCCcceecCChHHHh-----------------------hhhHHHHHHhhc
Confidence 22 11121100 001221 11 23446777777753 114555555533
Q ss_pred cc-----hh--------------hhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEecCCC----C-ch-H--
Q 019688 167 KE-----MV--------------FHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNS----S-PF-Q-- 219 (337)
Q Consensus 167 k~-----~v--------------FhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f~~~~----~-p~-~-- 219 (337)
.+ +| --.+=|. +.|+.+|..+|+.+|+.++++ ...||||||..+.+. . .+ +
T Consensus 116 ~~d~~a~~vv~d~c~~~~c~~~aeR~if~s-lkpR~eIqarID~iy~ehf~g-~~~IGVHVRhGngeD~~~h~~~~~D~e 193 (321)
T PF05830_consen 116 QEDHEANTVVCDACLMWRCDEEAEREIFSS-LKPRPEIQARIDAIYREHFAG-YSVIGVHVRHGNGEDIMDHAPYWADEE 193 (321)
T ss_dssp SS--S-SEEEE-S--TTSS-HHHHHHHHHH-S-B-HHHHHHHHHHHHHHTTT-SEEEEEEE---------------HHHH
T ss_pred ccccccchhhhHhhcCCcchhHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC-CceEEEEEeccCCcchhccCccccCch
Confidence 22 01 0111122 689999999999999999986 568999999765421 1 11 1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccc
Q 019688 220 QVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMN 299 (337)
Q Consensus 220 ~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~ 299 (337)
..+++|..-..+.+.++ ..|.+.|||+|++++..|++|..|...-+. ..-+++++.+.-+..+
T Consensus 194 ~~L~~V~~ai~~ak~~~-------------~~k~~~IFLATDSaeVid~fr~~FPdiiti----~k~F~~~~~g~Lhs~~ 256 (321)
T PF05830_consen 194 RALRQVCTAIDKAKALA-------------PPKPVRIFLATDSAEVIDQFRKKFPDIITI----PKQFPASQAGPLHSAA 256 (321)
T ss_dssp HHHHHHHHHHHHHHTS---------------SS-EEEEEEES-HHHHHHHHHHSTTEE--------------------HH
T ss_pred HHHHHHHHHHHHHHhcc-------------CCCCeeEEEecCcHHHHHHHHHHCCCeEEc----ccccCCCCCCcCcccc
Confidence 24667766665554343 235679999999999999999999754322 1236677764333222
Q ss_pred --hhhhhHHHHHHHHhhhcCcee-eeCCcccccccccccc
Q 019688 300 --NVHNQMALAEINLLRMMDACF-SHKRRVYIRLCGTRSR 336 (337)
Q Consensus 300 --~~h~~kAlaEm~LLS~sD~LV-tS~~STFG~~a~~~~~ 336 (337)
..+..+||+||||||.||+|| .|+.|+||.+|+.++-
T Consensus 257 ~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~p 296 (321)
T PF05830_consen 257 VGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFVP 296 (321)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH-S
T ss_pred cccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhcc
Confidence 235789999999999999999 8999999999987653
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.57 E-value=4.7e-07 Score=87.50 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=67.8
Q ss_pred hhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEe-cC----CCCchHHHHHHHHHHhhhcCCCCCCCCC---CC--
Q 019688 174 LGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIF-HK----NSSPFQQVMDQILSCTDKEKLLPQVDMG---KS-- 243 (337)
Q Consensus 174 L~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f-~~----~~~p~~~~~~qi~~C~~~e~lLP~v~~~---~~-- 243 (337)
+.| .+++++.|-.+.++|-+..+++...=||||+|+- |+ +.....+.+ +-.+|..+..+.+..... -+
T Consensus 169 ~~r-~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~ 246 (351)
T PF10250_consen 169 LQR-YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLL-ASPRCWGKKSINPEKKRRNGCCPST 246 (351)
T ss_dssp GGG-G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----T-TTHHHH-GGGTT-----HHHHS--H
T ss_pred ceE-EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHH-HHhHhhccccccchhhhhcCCCCCh
Confidence 344 5999999999999999999966678899999997 54 000000000 112333222222211000 00
Q ss_pred --cc----CCCCCCceeEEEEeccChH----HHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHh
Q 019688 244 --IV----APFGKGKSKAVLITSLIPS----YYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLL 313 (337)
Q Consensus 244 --~~----~~~~~~~~~aVlVtSL~~~----y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LL 313 (337)
.+ ...+..+.+.|+|||+... ..+.|+++|.+.-+.. .+ +++++.+.+.+ ++.|++|++++
T Consensus 247 ~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~--~~----~~~~~~~~~~~---~~~a~vD~~i~ 317 (351)
T PF10250_consen 247 PQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKD--DL----LSHEELEPLND---DQLAMVDQEIC 317 (351)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGG--T------EE--S--------S--HHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEecc--cc----CCHHHhhhccc---cchhHHHHHHH
Confidence 00 0112234579999999932 3366666665433221 12 23455555544 78999999999
Q ss_pred hhcCceeeeCCcccccc
Q 019688 314 RMMDACFSHKRRVYIRL 330 (337)
Q Consensus 314 S~sD~LVtS~~STFG~~ 330 (337)
+.||+.|.|..|||...
T Consensus 318 ~~s~~Figt~~Stfs~~ 334 (351)
T PF10250_consen 318 SRSDVFIGTCGSTFSSN 334 (351)
T ss_dssp HHSSEEEE-TT-HHHHH
T ss_pred hcCCEEEecCcchhHHH
Confidence 99999999999999753
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=97.82 E-value=5.9e-05 Score=72.78 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred cccceeEEEEEEecCCCCch---------HHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHH-
Q 019688 199 DAEERVGIQIRIFHKNSSPF---------QQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEK- 268 (337)
Q Consensus 199 ~a~~riGiQIR~f~~~~~p~---------~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~- 268 (337)
....-|||+||..|-...+. .+.+.+-++-..+. .++ ..++|.|+-.++.++
T Consensus 161 ~~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~--~~~----------------~~f~ifSDD~~w~k~~ 222 (298)
T PF01531_consen 161 KNSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIREK--VKN----------------PKFFIFSDDIEWCKEN 222 (298)
T ss_pred cCCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHHh--CCC----------------CEEEEEcCCHHHHHHH
Confidence 34577999999987532221 12333333333221 122 268889998877653
Q ss_pred HHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCceeeeCCcccccccccccc
Q 019688 269 MKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACFSHKRRVYIRLCGTRSR 336 (337)
Q Consensus 269 lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LVtS~~STFG~~a~~~~~ 336 (337)
++.. .+..+ + +. +..++.||+|+|.||+.|.| .||||.-||.++.
T Consensus 223 l~~~-------~~~~~-~---~~-----------~~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~ 267 (298)
T PF01531_consen 223 LKFS-------NGDVY-F---SG-----------NNSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSK 267 (298)
T ss_pred Hhhc-------CCcEE-E---EC-----------CCCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCC
Confidence 3321 11111 1 11 14688899999999999999 6999999987753
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0037 Score=63.33 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=87.5
Q ss_pred HHHHhhcCCCcchh--hhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEecCCCC-----chHHHHHHH---H
Q 019688 157 EEELDKLFPDKEMV--FHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSS-----PFQQVMDQI---L 226 (337)
Q Consensus 157 ~~eL~~lFP~k~~v--FhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f~~~~~-----p~~~~~~qi---~ 226 (337)
.+.|.++--+.- | -.+.-.||+.|.......+++=-.+ |.--..-||+|||..+.-.. +.++.|.-+ .
T Consensus 318 a~rL~rlHgdP~-vwwVgqFikYL~Rpqp~t~~~l~~a~k~-lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f 395 (580)
T KOG3705|consen 318 AERLTRLHGDPP-VWWVGQFIKYLMRPQPATQEKLDKALKS-LGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWF 395 (580)
T ss_pred HHHHHHhcCCCc-eeeHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHHH
Confidence 344555554442 3 2456789999999888877743332 33334789999999986432 334444421 2
Q ss_pred HHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCc-cEEEEEcCCcchhccccchhhhhH
Q 019688 227 SCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNG-EVVAVYQASHEVTEHSMNNVHNQM 305 (337)
Q Consensus 227 ~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~G-e~v~V~qpShe~~Q~~~~~~h~~k 305 (337)
+-..++ - +.-.+.||++|+.+...++.|+.|.+...-+. |+..--|- .-++-+. .-+.
T Consensus 396 ~~le~r-g---------------~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~eia~~A~l----~nRYTd~-sL~G 454 (580)
T KOG3705|consen 396 KVLEKR-G---------------KPLERRIFLASDDPTVVPEAKNKYPNYEVIGDTEIAKTAQL----NNRYTDA-SLMG 454 (580)
T ss_pred HHHHHh-C---------------CchhheEEEecCCchhchHhhccCCCcEEeccHHHHHHhhc----cccchhh-hhhh
Confidence 222111 1 11245899999999999999999977642211 11100010 1111121 2345
Q ss_pred HHHHHHHhhhcCceeeeCCcc
Q 019688 306 ALAEINLLRMMDACFSHKRRV 326 (337)
Q Consensus 306 AlaEm~LLS~sD~LVtS~~ST 326 (337)
-..||++||.+|.||+|=-|-
T Consensus 455 vIlDIh~LS~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 455 VILDIHILSKVDYLVCTFSSQ 475 (580)
T ss_pred eeeeeeeecccceEEEechHH
Confidence 568999999999999986654
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=19 Score=35.59 Aligned_cols=286 Identities=16% Similarity=0.223 Sum_probs=140.0
Q ss_pred CCCCCceEEEEecCCC-chhHHHHHHHHHHHHHHhCCeeeeeCCCccccccCCCCCCCCcCCCCCCCcccccccCCCCCC
Q 019688 7 DSSSECRYFVWIARAG-LGNRILSIASAFLYPILTNRVLLINEEPEMANLFCEPFPNATWLLPKDFPFMYRISRFKPNYP 85 (337)
Q Consensus 7 ~~~~~CkYlV~~~~~G-LGNRmLsl~SaFLYAlLT~RvLLVd~~~~~~~LFCEPFpgssWlLP~dFp~~~~~~~~~~~~~ 85 (337)
++.+.-.||++-|.-| .||+.=-....+.+|=+-||.|++.+.-++. .|= -++-..|-.| -|..+.-
T Consensus 24 ~~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~----~pe-~~n~~vpf~~-------yF~vepl 91 (386)
T KOG3849|consen 24 GSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYK----HPE-TKNLMVPFEF-------YFQVEPL 91 (386)
T ss_pred CCCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhcc----CCc-ccccccchhh-------eeecccH
Confidence 3445678999988644 9999988888999999999999997654433 110 0111111111 1111111
Q ss_pred cchHhHhhc-----CCCCCCCCCCCcEEEEEeccCCCCCCccccccc-chhhccCcCE----EEEecCcccccccccccc
Q 019688 86 KSYGNLLKK-----NKISDSTELLPTHLYLYLCNDYDHHDELFFCDQ-DQTILRNIPW----LIMKSNLYFLPSLFLMSS 155 (337)
Q Consensus 86 ~s~g~ml~~-----~~~~~~~~~~p~~~yl~L~~~~~~~d~~ffCd~-~q~~l~~v~W----l~~~sd~YfvP~Lf~~P~ 155 (337)
..|-+.+.. +...++....|+..|-.=.......|+-= |.. +-.-+ .-.| +-+-.+.||.+-=|-...
T Consensus 92 ~~YhRVitm~dFm~klapthwp~~~Rva~c~k~a~qr~pdkp~-Ch~KeGNPF-GPfWDqfhvsFv~sE~f~~i~Fd~~~ 169 (386)
T KOG3849|consen 92 AKYHRVITMQDFMKKLAPTHWPGTPRVAICDKSAAQRSPDKPG-CHSKEGNPF-GPFWDQFHVSFVGSEYFGDIGFDLNQ 169 (386)
T ss_pred hhhhhheeHHHHHHHhCcccCCCCcceeeeehhhhccCCCCCC-CcccCCCCC-CCchhheEeeeeccccccccccchhh
Confidence 223222211 11111221222222211111111111110 100 00000 0112 445566788876443322
Q ss_pred c---HHHHhhc----------------CCCcchhhhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEecCCCC
Q 019688 156 F---EEELDKL----------------FPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSS 216 (337)
Q Consensus 156 f---~~eL~~l----------------FP~k~~vFhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f~~~~~ 216 (337)
- .+-+++. ||-++. --.|-|| +.=|.++-+.-+.|-.+.|++ .=|||+.|.-..--.
T Consensus 170 ~~~~~kW~~kfp~eeyPVLAf~gAPA~FPv~~e-~~~lQkY-l~WS~r~~e~~k~fI~a~L~r--pfvgiHLRng~DWvr 245 (386)
T KOG3849|consen 170 MGSRKKWLEKFPSEEYPVLAFSGAPAPFPVKGE-VWSLQKY-LRWSSRITEQAKKFISANLAR--PFVGIHLRNGADWVR 245 (386)
T ss_pred cchHHHHHhhCCcccCceeeecCCCCCCccccc-cccHHHH-HHHHHHHHHHHHHHHHHhcCc--ceeEEEeecCchHHH
Confidence 2 2222221 333322 1245666 344556666677788889986 789999996321000
Q ss_pred chHHHHH-------HHHHHhhhcC----CCCCCCCCC-Ccc-----CCCCC-CceeEEEEeccChHHHHHHHHHhccCCc
Q 019688 217 PFQQVMD-------QILSCTDKEK----LLPQVDMGK-SIV-----APFGK-GKSKAVLITSLIPSYYEKMKNMYLKHPT 278 (337)
Q Consensus 217 p~~~~~~-------qi~~C~~~e~----lLP~v~~~~-~~~-----~~~~~-~~~~aVlVtSL~~~y~e~lr~~y~~~~t 278 (337)
--+++-| ---+|+-..+ |-|++-..+ ..+ ...++ ..-|+|||+|++..|.++|....-...
T Consensus 246 aCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~Eln~aL~~~~- 324 (386)
T KOG3849|consen 246 ACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDELNEALKPYE- 324 (386)
T ss_pred HHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHHHHHhhcccc-
Confidence 0001100 0113442111 112210000 000 00011 235799999999999999986654433
Q ss_pred CCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCceeeeCCcccc
Q 019688 279 LNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACFSHKRRVYI 328 (337)
Q Consensus 279 ~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LVtS~~STFG 328 (337)
|+||.--. ..+-.|.+.|.-+|+.|.---|||.
T Consensus 325 -----i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfs 357 (386)
T KOG3849|consen 325 -----IEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFS 357 (386)
T ss_pred -----eeEEecCc------------ccchhhhhhhcccchhhhhhHHHHH
Confidence 77765322 2466899999999999988888875
No 7
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=58.52 E-value=15 Score=34.52 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=38.9
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeCC--CccccccCCCC
Q 019688 13 RYFVWIARAGLGNRILSIASAFLYPILTNRVLLINEE--PEMANLFCEPF 60 (337)
Q Consensus 13 kYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~--~~~~~LFCEPF 60 (337)
|+++..+.+|-|-=.++.+.|..+|-.-.||||||-. ..+.++|.-++
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~ 50 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEF 50 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCcc
Confidence 5788889999999999999999999999999999742 34555554443
No 8
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=57.95 E-value=13 Score=36.44 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=41.1
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHHHhCCeeee--eCCCccccccCCCCCC
Q 019688 13 RYFVWIARAGLGNRILSIASAFLYPILTNRVLLI--NEEPEMANLFCEPFPN 62 (337)
Q Consensus 13 kYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLV--d~~~~~~~LFCEPFpg 62 (337)
|++++.+.+|-|---+|.+.|.-+|---.||||| |+...++++|.-+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~ 53 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGG 53 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BS
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCC
Confidence 7899999999999999999999999877789999 6666788899776544
No 9
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=36.21 E-value=1.2e+02 Score=28.70 Aligned_cols=95 Identities=8% Similarity=0.087 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccc
Q 019688 218 FQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHS 297 (337)
Q Consensus 218 ~~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~ 297 (337)
.++.-++|++.+.+.+-.|+.... ....++.+..+|++.++...|+..+.+-..+.....|-.+-++. +..
T Consensus 34 s~~tr~~V~~~a~elgY~p~~~a~---~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~-~~~----- 104 (342)
T PRK10014 34 STATGERVNQAIEELGFVRNRQAS---ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQ-GGK----- 104 (342)
T ss_pred CHHHHHHHHHHHHHhCCCcCHHHH---hhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEe-CCC-----
Confidence 356678899999998888864211 12334456789999888888888887766555555564444442 221
Q ss_pred cchhhhhHHHHHHHHhhhcCceeeeC
Q 019688 298 MNNVHNQMALAEINLLRMMDACFSHK 323 (337)
Q Consensus 298 ~~~~h~~kAlaEm~LLS~sD~LVtS~ 323 (337)
..+.+....+..+-.-.|.+|..+
T Consensus 105 --~~~~~~~~~~~l~~~~vdgiIi~~ 128 (342)
T PRK10014 105 --DGEQLAQRFSTLLNQGVDGVVIAG 128 (342)
T ss_pred --CHHHHHHHHHHHHhCCCCEEEEeC
Confidence 112334445554445577777665
No 10
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=30.31 E-value=93 Score=25.98 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=29.6
Q ss_pred EEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeCC
Q 019688 15 FVWIARAGLGNRILSIASAFLYPILTNRVLLINEE 49 (337)
Q Consensus 15 lV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~ 49 (337)
.||-+.+|.|+=-+++.=|-.+|--..|||+||..
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 46777999999999999999999999999999974
No 11
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.46 E-value=93 Score=31.00 Aligned_cols=53 Identities=17% Similarity=0.348 Sum_probs=44.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHHHhCCeeee--eCCCccccccCCCCCCCC
Q 019688 12 CRYFVWIARAGLGNRILSIASAFLYPILTNRVLLI--NEEPEMANLFCEPFPNAT 64 (337)
Q Consensus 12 CkYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLV--d~~~~~~~LFCEPFpgss 64 (337)
-|++++.+.+|-|=--+|.|.|.--|---.||||| |+...+++.|-.+++..-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~ 56 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDP 56 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCch
Confidence 37899999999999888888777777777779998 777889999988776553
No 12
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=27.93 E-value=79 Score=29.52 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=28.4
Q ss_pred eEEEEecCCCchhHH-HHHHHHHHHHHHhCCeee
Q 019688 13 RYFVWIARAGLGNRI-LSIASAFLYPILTNRVLL 45 (337)
Q Consensus 13 kYlV~~~~~GLGNRm-Lsl~SaFLYAlLT~RvLL 45 (337)
.|||.++..||||-. |-+||..+-+-||+-|.=
T Consensus 3 g~lvcksgfglGkVaKlmlAs~vv~s~~s~~~~A 36 (194)
T PF07199_consen 3 GHLVCKSGFGLGKVAKLMLASVVVLSALSSNVWA 36 (194)
T ss_pred ceeEeecccchHHHHHHHHHHHHHHHHhccceee
Confidence 489999999999975 677888889999998865
No 13
>TIGR01601 PYST-C1 Plasmodium yoelii subtelomeric domain PYST-C1. The C-terminal portions of the genes which contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (TIGR01604).
Probab=26.57 E-value=23 Score=28.56 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHh
Q 019688 25 NRILSIASAFLYPILT 40 (337)
Q Consensus 25 NRmLsl~SaFLYAlLT 40 (337)
-||.|+|.-.||+||+
T Consensus 3 krIfslVcivlY~ll~ 18 (82)
T TIGR01601 3 KRIFSLVCIVLYILLA 18 (82)
T ss_pred ceEeehhHHHHHHHHh
Confidence 3899999999999996
No 14
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=25.62 E-value=1.8e+02 Score=27.16 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccc
Q 019688 218 FQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHS 297 (337)
Q Consensus 218 ~~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~ 297 (337)
.++.-++|++++.+-+--|+.... ....++.+.++|++..+...|+..+.+-..+.....|-.+-++. +.+
T Consensus 29 s~~tr~rV~~~a~~lgY~pn~~a~---~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~-~~~----- 99 (329)
T TIGR01481 29 KPATRKKVLEVIKRLDYRPNAVAR---GLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSN-SDE----- 99 (329)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHH---HHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEe-CCC-----
Confidence 356778999999998888865211 11223456788888887777777765544443334454444432 211
Q ss_pred cchhhhhHHHHHHHHhhhcCceeeeC
Q 019688 298 MNNVHNQMALAEINLLRMMDACFSHK 323 (337)
Q Consensus 298 ~~~~h~~kAlaEm~LLS~sD~LVtS~ 323 (337)
....++...++..-.-.|-+|..+
T Consensus 100 --~~~~~~~~~~~l~~~~vdGiIi~~ 123 (329)
T TIGR01481 100 --DPEKEVQVLNTLLSKQVDGIIFMG 123 (329)
T ss_pred --CHHHHHHHHHHHHhCCCCEEEEeC
Confidence 112344555665555677777643
No 15
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=25.15 E-value=1.7e+02 Score=25.97 Aligned_cols=51 Identities=16% Similarity=0.411 Sum_probs=30.4
Q ss_pred EEEecCCCCchHHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHh
Q 019688 208 IRIFHKNSSPFQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMY 273 (337)
Q Consensus 208 IR~f~~~~~p~~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y 273 (337)
||.|+.+++| ++.+++|+.+++. ++++.+...-.++|.+. ++-.++|++..
T Consensus 10 iR~F~~~~V~-~e~i~~ileaA~~-------------APS~~N~Qpw~fvVv~~-~~~~~~l~~~~ 60 (196)
T cd02145 10 VRHFFPDPVP-EEVLERLLAAAHH-------------APSVGLSQPWRFIRVRD-PATRAAIKALF 60 (196)
T ss_pred hhcCCCCCCC-HHHHHHHHHHHHh-------------CCCcCCCCCeEEEEEcC-HHHHHHHHHHH
Confidence 5889988655 6677888888853 22333444445555543 45555565444
No 16
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=24.61 E-value=43 Score=26.18 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=29.0
Q ss_pred hcCCCcchhhhhhhccccCCchHHHHHHHHHHHhhhcc
Q 019688 162 KLFPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLAD 199 (337)
Q Consensus 162 ~lFP~k~~vFhhL~RyLfhPsn~VW~~V~rfy~ayla~ 199 (337)
..||++..++..|.|.+|.|+...=. -..|++|+.++
T Consensus 33 ~~~~~~~gl~~ell~~ift~~~~~~~-~~~Y~~A~~~G 69 (82)
T PF07841_consen 33 RPLPEHNGLLGELLHIIFTPSSSDDE-DDEYYEAERAG 69 (82)
T ss_pred ccccccCcHHHHHHHHhcCCCccccc-hHHHHHHHHcC
Confidence 34656778999999999999877655 77888887665
No 17
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=24.18 E-value=53 Score=28.47 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=21.3
Q ss_pred hCCeeeeeCCCccccccCCCCCCCCcCCCCCCCcc
Q 019688 40 TNRVLLINEEPEMANLFCEPFPNATWLLPKDFPFM 74 (337)
Q Consensus 40 T~RvLLVd~~~~~~~LFCEPFpgssWlLP~dFp~~ 74 (337)
.+|||||...+. |..|. |.||.+|--.
T Consensus 20 ~~~iLLvrR~~~-------p~~g~-WalPGG~ve~ 46 (145)
T COG1051 20 NGRILLVRRANE-------PGAGY-WALPGGFVEI 46 (145)
T ss_pred CCEEEEEEecCC-------CCCCc-EeCCCccCCC
Confidence 358999988766 77776 9999998754
No 18
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.98 E-value=93 Score=27.60 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=33.0
Q ss_pred eeEEEEeccC---hHHHHHHHHHhccCCcCCccEEEEEcC----Ccchhcc----cc---chhhhhHHHH
Q 019688 253 SKAVLITSLI---PSYYEKMKNMYLKHPTLNGEVVAVYQA----SHEVTEH----SM---NNVHNQMALA 308 (337)
Q Consensus 253 ~~aVlVtSL~---~~y~e~lr~~y~~~~t~~Ge~v~V~qp----She~~Q~----~~---~~~h~~kAla 308 (337)
-+.|+|||+. |++.+||+.+|... +|.| |-||.++ ++ ++.|...|||
T Consensus 76 G~PviVAtDV~p~P~~V~Kia~~f~A~---------ly~P~~dlsveeK~~l~~~~~~~~~n~HeRDALA 136 (138)
T PF04312_consen 76 GKPVIVATDVSPPPETVKKIARSFNAV---------LYTPERDLSVEEKQELAREYSERYENDHERDALA 136 (138)
T ss_pred CCEEEEEecCCCCcHHHHHHHHHhCCc---------ccCCCCcCCHHHHHHHHHhhCCCCCCchHHhHhh
Confidence 3789999994 69999999999654 3444 4445442 23 4568888886
No 19
>PF05322 NinE: NINE Protein; InterPro: IPR007986 This family consists of NINE proteins from several bacteriophage and from Escherichia coli.
Probab=22.94 E-value=25 Score=26.74 Aligned_cols=12 Identities=0% Similarity=-0.092 Sum_probs=9.8
Q ss_pred CCcccccccccc
Q 019688 323 KRRVYIRLCGTR 334 (337)
Q Consensus 323 ~~STFG~~a~~~ 334 (337)
-.|||||+|+.|
T Consensus 36 ~vktf~y~~~L~ 47 (60)
T PF05322_consen 36 DVKTFNYTAHLW 47 (60)
T ss_pred hcccccchhHHH
Confidence 358999999876
No 20
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=22.43 E-value=1.7e+02 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=28.1
Q ss_pred EEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeC
Q 019688 15 FVWIARAGLGNRILSIASAFLYPILTNRVLLINE 48 (337)
Q Consensus 15 lV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~ 48 (337)
.|....+|-|.=.+++.=|...|-.-.||+|||-
T Consensus 3 ~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~ 36 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDA 36 (179)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4556689999999988888888877789999983
No 21
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=21.47 E-value=2.3e+02 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=17.2
Q ss_pred EEEecCCCCchHHHHHHHHHHhh
Q 019688 208 IRIFHKNSSPFQQVMDQILSCTD 230 (337)
Q Consensus 208 IR~f~~~~~p~~~~~~qi~~C~~ 230 (337)
||.|+.++.+ ++.+++|+.+++
T Consensus 11 vR~f~~~~v~-~e~l~~il~~a~ 32 (178)
T cd02136 11 VRAFLPDPVP-RETIEEILAAAQ 32 (178)
T ss_pred hhcCCCCCCC-HHHHHHHHHHHH
Confidence 5899988665 567888999884
No 22
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=20.19 E-value=3e+02 Score=25.70 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhcccc
Q 019688 219 QQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSM 298 (337)
Q Consensus 219 ~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~ 298 (337)
++.-++|++++.+-+-.|+.... ....++.+.++|++..+...|+.++.+-..+.....|=.+.++. +.++
T Consensus 32 ~~tr~rV~~~a~elgY~pn~~a~---~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~-~~~~----- 102 (328)
T PRK11303 32 DKTVEKVMAVVREHNYHPNAVAA---GLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIAC-SDDQ----- 102 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHH---HhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe-CCCC-----
Confidence 56778899999998888865211 11233445778888777777777766655444444453344443 2211
Q ss_pred chhhhhHHHHHHHHhhhcCceeeeCC
Q 019688 299 NNVHNQMALAEINLLRMMDACFSHKR 324 (337)
Q Consensus 299 ~~~h~~kAlaEm~LLS~sD~LVtS~~ 324 (337)
...++...++.+-.-.|.+|..+.
T Consensus 103 --~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 103 --PDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred --HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 123455666655567888877543
No 23
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=20.18 E-value=2.1e+02 Score=31.22 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=37.7
Q ss_pred CceeEEEEeccCh---HHH----HHHHHHhccCCcC--CccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCceee
Q 019688 251 GKSKAVLITSLIP---SYY----EKMKNMYLKHPTL--NGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACFS 321 (337)
Q Consensus 251 ~~~~aVlVtSL~~---~y~----e~lr~~y~~~~t~--~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LVt 321 (337)
..+.+|+++|+.- .+- ..+.+.|.++... +.+++.+---.. +...-.+|+.++.-+.-+|++||
T Consensus 458 ~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~D-------d~~~I~~~l~~~~~~~~~DlVIt 530 (659)
T PLN02699 458 EVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPD-------DVEKIKDVLQKWSDIDRMDLILT 530 (659)
T ss_pred CcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCC-------CHHHHHHHHHHHHhcCCCCEEEE
Confidence 3467888898842 222 2444455433221 334443311111 11122455555332467999999
Q ss_pred eCCccccc
Q 019688 322 HKRRVYIR 329 (337)
Q Consensus 322 S~~STFG~ 329 (337)
|+.+.+|-
T Consensus 531 TGGts~g~ 538 (659)
T PLN02699 531 LGGTGFTP 538 (659)
T ss_pred CCCccCCC
Confidence 99988873
Done!