Query 019688
Match_columns 337
No_of_seqs 117 out of 163
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhc_A NODZ, nodulation fucosy 100.0 3.3E-44 1.1E-48 342.9 8.2 276 10-335 2-297 (330)
2 2de0_X Alpha-(1,6)-fucosyltran 99.7 7.1E-16 2.4E-20 157.7 19.8 250 10-334 143-416 (526)
3 3zy2_A Putative GDP-fucose pro 98.2 5.6E-06 1.9E-10 80.8 11.1 140 164-330 178-339 (362)
4 4ap5_A GDP-fucose protein O-fu 97.7 0.0021 7.3E-08 62.8 18.7 128 171-329 212-370 (408)
5 2cpd_A Apobec-1 stimulating pr 36.3 75 0.0026 23.4 5.8 68 252-321 14-82 (99)
6 3kjx_A Transcriptional regulat 31.4 1.5E+02 0.0052 26.5 8.0 95 219-324 39-133 (344)
7 1j26_A Immature colon carcinom 31.1 85 0.0029 25.5 5.6 59 250-311 38-103 (112)
8 3io3_A DEHA2D07832P; chaperone 27.6 55 0.0019 31.0 4.5 51 10-60 16-70 (348)
9 1jlp_A PSI-conotoxin PIIIF; mu 21.6 28 0.00097 21.0 0.7 7 57-63 10-16 (26)
10 3dbi_A Sugar-binding transcrip 21.3 1.7E+02 0.0057 26.1 6.3 95 219-324 32-128 (338)
No 1
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=100.00 E-value=3.3e-44 Score=342.94 Aligned_cols=276 Identities=16% Similarity=0.184 Sum_probs=193.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeCCCccccccCCCCCCCCcCCCCCCCcccccccCCCCCCcchH
Q 019688 10 SECRYFVWIARAGLGNRILSIASAFLYPILTNRVLLINEEPEMANLFCEPFPNATWLLPKDFPFMYRISRFKPNYPKSYG 89 (337)
Q Consensus 10 ~~CkYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~~~~~~LFCEPFpgssWlLP~dFp~~~~~~~~~~~~~~s~g 89 (337)
+.||||||...+||||||+.+||||+||++|||+|+|||++ ++||+ .|+++|+ |.+||.. . ++++
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~---~~y~~-~~~~~~f-p~~F~~v---~-------~~~~ 66 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG---SCYVE-QPFSNAF-PAFFEPV---E-------DIAG 66 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT---CTTCS-STTSBSH-HHHBCCC---S-------EETT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC---cccCC-CCccccC-cccccch---h-------hhcc
Confidence 57999999999999999999999999999999999999987 57996 5678886 8888721 1 2334
Q ss_pred hHhhcC-CCCCCC--CC-CCcEEEEEeccCCCCCCcccccccchhh------ccCcCEEEEecCcccccccccccccHHH
Q 019688 90 NLLKKN-KISDST--EL-LPTHLYLYLCNDYDHHDELFFCDQDQTI------LRNIPWLIMKSNLYFLPSLFLMSSFEEE 159 (337)
Q Consensus 90 ~ml~~~-~~~~~~--~~-~p~~~yl~L~~~~~~~d~~ffCd~~q~~------l~~v~Wl~~~sd~YfvP~Lf~~P~f~~e 159 (337)
+++..+ .++... .+ .|+ +|.++. .+.++|++.|-. ..-++|....++.|++|++++.+.|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~ 139 (330)
T 2hhc_A 67 VPVICDDRVNQLSFPGPFFPR-WWNRPS------IDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEE 139 (330)
T ss_dssp EEEECSGGGGTCCCCSSEESG-GGGSCG------GGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHH
T ss_pred cceecccccccccCCCCcCch-hhhccc------cccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhh
Confidence 432211 111111 01 122 222221 136788777543 1223454344458999999999999887
Q ss_pred HhhcCCCcchhhhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEecCCCCch--------HHHHHHHHHHhhh
Q 019688 160 LDKLFPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSSPF--------QQVMDQILSCTDK 231 (337)
Q Consensus 160 L~~lFP~k~~vFhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f~~~~~p~--------~~~~~qi~~C~~~ 231 (337)
. ++.+| ||| +|++++|+.|++|+++++++ ++.||||||..+...... ...++++.+|+.+
T Consensus 140 ~------~~~i~----~yl-~p~~~i~~~i~~~~~~~~~~-~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~ 207 (330)
T 2hhc_A 140 A------ERLIF----RNI-KLRSEIRARIDALYEEHFSG-HSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRK 207 (330)
T ss_dssp H------HHHHH----HHS-CBCHHHHHHHHHHHHHHTTT-SEEEEEEECC------------CHHHHHHHHHHHHHHHH
T ss_pred h------HHHHH----hcC-CccHHHHHHHHHHHHHhccC-CceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHH
Confidence 3 44444 997 99999999999999999885 689999999998543221 1237899999988
Q ss_pred cCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEE-cCCcchhccccchhhhhHHHHHH
Q 019688 232 EKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVY-QASHEVTEHSMNNVHNQMALAEI 310 (337)
Q Consensus 232 e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~-qpShe~~Q~~~~~~h~~kAlaEm 310 (337)
.+.+++. +.++|||+|+.+++.|++|++|++..+.+++.+... ++.|. ...+..+.++|++||
T Consensus 208 ~~~~~~~-------------~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~---~~~~~~~~~~~~~Dm 271 (330)
T 2hhc_A 208 AKALSYP-------------KPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHS---AEMGIEGGASALIDM 271 (330)
T ss_dssp HHTSCCS-------------SCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------C---HHHHHHHHHHHHHHH
T ss_pred HHhccCc-------------CceEEEEEeCCHHHHHHHHHHcCCcccccceeeccccccccc---CchhhccchHHHHHH
Confidence 8776642 357999999999999999999998666555432111 12222 112346789999999
Q ss_pred HHhhhcCcee-eeCCccccccccccc
Q 019688 311 NLLRMMDACF-SHKRRVYIRLCGTRS 335 (337)
Q Consensus 311 ~LLS~sD~LV-tS~~STFG~~a~~~~ 335 (337)
||||.||++| |+++||||++||.+.
T Consensus 272 ~LLS~cd~~I~~~~~STFs~~aa~l~ 297 (330)
T 2hhc_A 272 YLLARCATVIRFPPTSAFTRYARLLV 297 (330)
T ss_dssp HHHTTCSEEEEESTTCGGGHHHHHHC
T ss_pred HHHHcCCeeEECCCCCCHHHHHHHhC
Confidence 9999999999 888999999999654
No 2
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=99.69 E-value=7.1e-16 Score=157.68 Aligned_cols=250 Identities=15% Similarity=0.188 Sum_probs=148.5
Q ss_pred CCceEEEEe--cCCCchhHHHHHHHHHHHHHHhCCeeeeeCCC------ccccccCCCCCCCCcCCCCCCCcccccccCC
Q 019688 10 SECRYFVWI--ARAGLGNRILSIASAFLYPILTNRVLLINEEP------EMANLFCEPFPNATWLLPKDFPFMYRISRFK 81 (337)
Q Consensus 10 ~~CkYlV~~--~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~~------~~~~LFCEPFpgssWlLP~dFp~~~~~~~~~ 81 (337)
+.+||||+. ...|+|++|-.++.+|.||+.|||+|+||+++ .+.++|- |+-...
T Consensus 143 s~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w~Y~~g~w~~yF~-P~s~~C----------------- 204 (526)
T 2de0_X 143 SKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFR-PVSETC----------------- 204 (526)
T ss_dssp GGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTCSSCTTCGGGTBC-CSCSSC-----------------
T ss_pred CCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCCCCcCCCCHHHhhh-CcCccc-----------------
Confidence 456899996 47999999999999999999999999999965 2222221 100000
Q ss_pred CCCCcchHhHhhcCCCCCCCCCCCcEEEEEeccCCCCCCcccccccc----hhhccCcCEEEEecCcccccccc--cccc
Q 019688 82 PNYPKSYGNLLKKNKISDSTELLPTHLYLYLCNDYDHHDELFFCDQD----QTILRNIPWLIMKSNLYFLPSLF--LMSS 155 (337)
Q Consensus 82 ~~~~~s~g~ml~~~~~~~~~~~~p~~~yl~L~~~~~~~d~~ffCd~~----q~~l~~v~Wl~~~sd~YfvP~Lf--~~P~ 155 (337)
.+. . +. ....|... ...+-+.+++ . +.+-.+.+| .+|.
T Consensus 205 --~~~-------~---~~---------------------~~~~w~~~~~~~~~~vV~~~~i--~-~~~~~~~~~~~~~P~ 248 (526)
T 2de0_X 205 --TDR-------S---GI---------------------STGHWSGEVKDKNVQVVELPIV--D-SLHPRPPYLPLAVPE 248 (526)
T ss_dssp --CCC-------C---CS---------------------CCCBCCCTTGGGGCSEEEECCG--G-GCSSCCSCCTTCEEG
T ss_pred --cCC-------C---cc---------------------ccCCCCCcccCCCcceEEeecc--c-cccccccccccccch
Confidence 000 0 00 00001000 0000011110 0 011123333 4454
Q ss_pred c-HHHHhhcCCCc-chhhhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEecCC-----CCchHHHHHHH---
Q 019688 156 F-EEELDKLFPDK-EMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKN-----SSPFQQVMDQI--- 225 (337)
Q Consensus 156 f-~~eL~~lFP~k-~~vFhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f~~~-----~~p~~~~~~qi--- 225 (337)
. -+.|.++--+. --.+.++.||||.|++.+...|.++++.. ...+.-||||||..|.. -.|.++.++.+
T Consensus 249 ~~~~~L~~l~~dp~~w~~~q~~~yl~rP~~~i~~~I~~~~~~l-~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~ 327 (526)
T 2de0_X 249 DLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATKKL-GFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEH 327 (526)
T ss_dssp GGHHHHHHHCSCHHHHHHHHHHHHHTCBCHHHHHHHHHHHHHH-TCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHH
T ss_pred hHHHHHHhccCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHH
Confidence 3 34444443111 12478899999999999999999999884 22467899999998862 23555655533
Q ss_pred HHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhH
Q 019688 226 LSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQM 305 (337)
Q Consensus 226 ~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~k 305 (337)
++...+++ ..+.+.|||+|+.++.++.++++|.+..-. ++.. ++ -+.....+... ..-..
T Consensus 328 ~~~l~~~~----------------~~~~~~ifLATDDp~v~~e~k~~~p~~~~~-~d~~-~~-~~a~~~~R~s~-~~l~~ 387 (526)
T 2de0_X 328 FQLLARRM----------------QVDKKRVYLATDDPSLLKEAKTKYPNYEFI-SDNS-IS-WSAGLHNRYTE-NSLRG 387 (526)
T ss_dssp HHHHHTTS----------------CCSSCEEEEEESCHHHHHHHHHHCTTSEEE-CCCC-SS-CSSGGGGGTCC-THHHH
T ss_pred HHHHHhhc----------------CCCCCeEEEEcCCHHHHHHHHHhCCCCEEe-cCcc-cc-cccCccccccH-HHHHH
Confidence 33333211 233468999999999999999988765211 1111 11 11111112211 23468
Q ss_pred HHHHHHHhhhcCceeeeCCcccccccccc
Q 019688 306 ALAEINLLRMMDACFSHKRRVYIRLCGTR 334 (337)
Q Consensus 306 AlaEm~LLS~sD~LVtS~~STFG~~a~~~ 334 (337)
+++||||||.||++|.|..|||+.+|+..
T Consensus 388 ~l~DL~lLs~cd~~Vgt~sS~~srla~~l 416 (526)
T 2de0_X 388 VILDIHFLSQADFLVCTFSSQVCRVAYEI 416 (526)
T ss_dssp HHHHHHHHHHSSEEEECTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCeeecCCCCHHHHHHHHH
Confidence 99999999999999999999999998754
No 3
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.23 E-value=5.6e-06 Score=80.84 Aligned_cols=140 Identities=11% Similarity=0.153 Sum_probs=92.0
Q ss_pred CCCcchhhhhhhccccCCchHHHHHHHHHHHhhhccccceeEEEEEEe-cCC-------C--CchHHHHHHHHHHh--hh
Q 019688 164 FPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIF-HKN-------S--SPFQQVMDQILSCT--DK 231 (337)
Q Consensus 164 FP~k~~vFhhL~RyLfhPsn~VW~~V~rfy~ayla~a~~riGiQIR~f-~~~-------~--~p~~~~~~qi~~C~--~~ 231 (337)
||-++ --.+|.|| +..++++-...++|-+++|.+ .=|||++|.. |++ . .| +.+. --+|. ..
T Consensus 178 FPv~~-e~r~LqkY-m~WS~~i~~~a~~fI~~~L~r--pyVgIHLR~G~DW~~aC~hlk~~~~~--~lfa-SPQC~Gy~~ 250 (362)
T 3zy2_A 178 FPSKG-KVWSIQKY-LRWSSRITEQAKKFISANLAK--PFVAVHLRNDADWVRVCEHIDTTTNR--PLFA-SEQCLGEGH 250 (362)
T ss_dssp SSCCG-GGGGGGGG-CCBCHHHHHHHHHHHHHHCCS--SEEEEEECCCHHHHHHHHTCCTTTCC--CCTT-THHHHCGGG
T ss_pred CCcCh-hhHhHHHh-ccccHHHHHHHHHHHHHhcCC--CeEEEEEecCCcHHHHHhhhccccCc--cccc-CCcccCCcc
Confidence 56554 35789999 999999999999999999986 8899999985 221 0 01 0000 01344 11
Q ss_pred cCC-------CCCCCCCCCcc-CCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEE--cCCcchhccccchh
Q 019688 232 EKL-------LPQVDMGKSIV-APFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVY--QASHEVTEHSMNNV 301 (337)
Q Consensus 232 e~l-------LP~v~~~~~~~-~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~--qpShe~~Q~~~~~~ 301 (337)
++. +|.++...... ...++.+.++|||+|+...+.|+||+.+.... |.|+ +|.
T Consensus 251 ~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~~~------v~vv~~~pe----------- 313 (362)
T 3zy2_A 251 HLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYE------IEAHRQEPD----------- 313 (362)
T ss_dssp TTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGGGT------CCEECCSSC-----------
T ss_pred cCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhccC------ceEEEeCCc-----------
Confidence 111 23221100000 00112246799999999999999999885432 2222 221
Q ss_pred hhhHHHHHHHHhhhcCceeeeCCcccccc
Q 019688 302 HNQMALAEINLLRMMDACFSHKRRVYIRL 330 (337)
Q Consensus 302 h~~kAlaEm~LLS~sD~LVtS~~STFG~~ 330 (337)
.|.+|||+|+.+|+.|-+..|||..-
T Consensus 314 ---~a~ID~~I~~~A~~FIGN~~SSFSa~ 339 (362)
T 3zy2_A 314 ---DMYTSLAIMGRADLFVGNCVSTFSHI 339 (362)
T ss_dssp ---CHHHHHHHHHHSSEEEECTTCHHHHH
T ss_pred ---hhHHHHHHHHhCCEeecCccccccHH
Confidence 89999999999999999999999753
No 4
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=97.70 E-value=0.0021 Score=62.82 Aligned_cols=128 Identities=10% Similarity=0.143 Sum_probs=83.0
Q ss_pred hhhhhccccCCchHHHHHHHHHHHhhhcccc------------------------ceeEEEEEEecCCC-----C-chHH
Q 019688 171 FHHLGRYLFHPSNQVWKLITSYYKKYLADAE------------------------ERVGIQIRIFHKNS-----S-PFQQ 220 (337)
Q Consensus 171 FhhL~RyLfhPsn~VW~~V~rfy~ayla~a~------------------------~riGiQIR~f~~~~-----~-p~~~ 220 (337)
+..+-|| +.-++.+-....+|-+.+|..++ .=+++|+|..+... . +.+.
T Consensus 212 ~~~~~r~-l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps~~~ 290 (408)
T 4ap5_A 212 YWDTRRS-MVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEG 290 (408)
T ss_dssp HHHHHHT-CCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCCHHH
T ss_pred hhhHHHH-hhhhHHHHHHHHHHHHHHhCcccceeecccchhHhhhhcccccccCCCccccccccccchhhhhccCCCHHH
Confidence 4455566 34456666667777777765321 23789999865431 1 3355
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHH-HHHHHHHhccCCcCCccEEEEEcCCcchhccccc
Q 019688 221 VMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSY-YEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMN 299 (337)
Q Consensus 221 ~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y-~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~ 299 (337)
+.++|..-..+.+ .+.|||||+.... .+.|++...+ +..+.|..++.....+
T Consensus 291 ~~~~i~~~~~~~~-------------------~~~VyiATD~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~d 343 (408)
T 4ap5_A 291 AVRKIRSLMKTHR-------------------LDKVFVATDAVRKEYEELKKLLPE--------MVRFEPTWEELELYKD 343 (408)
T ss_dssp HHHHHHHHHHHHT-------------------CSCEEEEECCCHHHHHHHHHHCTT--------EECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------------------CCEEEEeCCCchhHHHHHHHhCCC--------cEEecCcchhhhccCc
Confidence 5566655554432 3479999996543 6788887632 3345565554443322
Q ss_pred hhhhhHHHHHHHHhhhcCceeeeCCccccc
Q 019688 300 NVHNQMALAEINLLRMMDACFSHKRRVYIR 329 (337)
Q Consensus 300 ~~h~~kAlaEm~LLS~sD~LVtS~~STFG~ 329 (337)
+.-|++|++.++.+|+.|-|..|||..
T Consensus 344 ---~~~a~idq~Ic~~a~~FiGt~~StfS~ 370 (408)
T 4ap5_A 344 ---GGVAIIDQWICAHARFFIGTSVSTFSF 370 (408)
T ss_dssp ---HHHHHHHHHHHHTEEEEEBCTTCHHHH
T ss_pred ---chhhHHHHHHHHhCCeeEeCCcCchhH
Confidence 356999999999999999999999964
No 5
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.29 E-value=75 Score=23.43 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=46.9
Q ss_pred ceeEEEEeccChHH-HHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCceee
Q 019688 252 KSKAVLITSLIPSY-YEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACFS 321 (337)
Q Consensus 252 ~~~aVlVtSL~~~y-~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LVt 321 (337)
..+.|||..|.... -+.|++.|.+... |++..|..+-+-..=.|.+....++|+..|--..+.+.-|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45689999997654 4668888877643 77888877765555556777788899887754444444433
No 6
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.38 E-value=1.5e+02 Score=26.52 Aligned_cols=95 Identities=11% Similarity=-0.040 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhcccc
Q 019688 219 QQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSM 298 (337)
Q Consensus 219 ~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~ 298 (337)
++.-++|++.+.+-+--|+.... ....++.+.++|++.++...|+..+.+-..+.....|=.+.+.....
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~---~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------- 108 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAG---ALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDY------- 108 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCS---CSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTT-------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHH---HhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCC-------
Confidence 56677899999888888865321 12234456789999888777777666655554445554454543222
Q ss_pred chhhhhHHHHHHHHhhhcCceeeeCC
Q 019688 299 NNVHNQMALAEINLLRMMDACFSHKR 324 (337)
Q Consensus 299 ~~~h~~kAlaEm~LLS~sD~LVtS~~ 324 (337)
....+....+..+=.-.|.+|..+.
T Consensus 109 -~~~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 109 -LPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEECC
Confidence 1223455666666667888888653
No 7
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=31.06 E-value=85 Score=25.46 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=37.9
Q ss_pred CCceeEEEEe-------ccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHH
Q 019688 250 KGKSKAVLIT-------SLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEIN 311 (337)
Q Consensus 250 ~~~~~aVlVt-------SL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~ 311 (337)
|....||-++ +|..++-++|...+....|.+|+++-. +.++..|..++..+++=|.++.
T Consensus 38 NKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~---~q~~RSQ~~Nr~~Al~rL~~~l 103 (112)
T 1j26_A 38 NKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLT---SESSRYQFRNLAECLQKIRDMI 103 (112)
T ss_dssp SSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEE---ECCCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEE---ECCccCHHHHHHHHHHHHHHHH
Confidence 3345567664 688899999999999999999965443 3333333334444555555543
No 8
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=27.61 E-value=55 Score=31.02 Aligned_cols=51 Identities=20% Similarity=0.424 Sum_probs=41.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHH--HHhCCeeeeeCC--CccccccCCCC
Q 019688 10 SECRYFVWIARAGLGNRILSIASAFLYP--ILTNRVLLINEE--PEMANLFCEPF 60 (337)
Q Consensus 10 ~~CkYlV~~~~~GLGNRmLsl~SaFLYA--lLT~RvLLVd~~--~~~~~LFCEPF 60 (337)
...|++|..+.+|-|---+++.-|..+| -.-.||||||-. ..+.++|-.++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~ 70 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKF 70 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhcccc
Confidence 4568999999999999999999999999 677899999764 45667776655
No 9
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=21.61 E-value=28 Score=21.00 Aligned_cols=7 Identities=57% Similarity=1.663 Sum_probs=5.9
Q ss_pred CCCCCCC
Q 019688 57 CEPFPNA 63 (337)
Q Consensus 57 CEPFpgs 63 (337)
|.||||-
T Consensus 10 crpfpgc 16 (26)
T 1jlp_A 10 CRPFPGC 16 (26)
T ss_dssp CCCCTTT
T ss_pred ccCCCch
Confidence 8899985
No 10
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=21.26 E-value=1.7e+02 Score=26.10 Aligned_cols=95 Identities=11% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEec--cChHHHHHHHHHhccCCcCCccEEEEEcCCcchhcc
Q 019688 219 QQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITS--LIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEH 296 (337)
Q Consensus 219 ~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtS--L~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~ 296 (337)
++.-++|++.+.+-+--|+.... ....++.+.++|++.. ....|+..+.+-..+.....|-.+.++. ++.
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~---~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~---- 103 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLAR---NLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKH---- 103 (338)
T ss_dssp -------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTT----
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH---HhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCC----
Confidence 34455677777776666654211 1123445678999988 7777777776655555445554455544 221
Q ss_pred ccchhhhhHHHHHHHHhhhcCceeeeCC
Q 019688 297 SMNNVHNQMALAEINLLRMMDACFSHKR 324 (337)
Q Consensus 297 ~~~~~h~~kAlaEm~LLS~sD~LVtS~~ 324 (337)
....+...++..+=.-.|.+|..+.
T Consensus 104 ---~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 104 ---SAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp ---SHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ---ChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 1223455667777678888888664
Done!