Query 019688
Match_columns 337
No_of_seqs 117 out of 163
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 05:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019688.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019688hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ihua1 c.37.1.10 (A:1-296) Ar 56.7 7 0.00051 32.5 5.4 48 12-59 8-57 (296)
2 d2bz2a1 d.58.7.1 (A:35-113) Ne 47.8 20 0.0014 24.4 5.9 67 251-320 3-69 (79)
3 d1f8ya_ c.23.14.1 (A:) Nucleos 43.5 8.1 0.00059 30.8 3.5 67 253-321 2-83 (156)
4 d1wwha1 d.58.7.1 (A:169-249) N 31.8 34 0.0025 23.7 5.0 50 254-307 5-56 (81)
5 d1ihua2 c.37.1.10 (A:308-586) 27.1 42 0.0031 27.2 5.6 39 10-48 18-56 (279)
6 d2cpda1 d.58.7.1 (A:223-308) A 26.4 51 0.0037 22.3 5.1 67 252-320 7-74 (86)
7 d1tjya_ c.93.1.1 (A:) AI-2 rec 26.1 32 0.0023 27.7 4.5 70 250-326 2-71 (316)
8 d1s2da_ c.23.14.1 (A:) Purine 25.9 80 0.0059 24.5 6.9 65 253-321 7-87 (167)
9 d2nzug1 c.93.1.1 (G:58-332) Gl 20.5 82 0.006 24.8 6.0 69 249-325 1-69 (275)
10 d1zcha1 d.90.1.1 (A:1-249) Hyp 19.3 61 0.0044 26.7 5.0 54 208-276 14-67 (249)
No 1
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=56.68 E-value=7 Score=32.45 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=39.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeCC--CccccccCCC
Q 019688 12 CRYFVWIARAGLGNRILSIASAFLYPILTNRVLLINEE--PEMANLFCEP 59 (337)
Q Consensus 12 CkYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~~--~~~~~LFCEP 59 (337)
-||+++.+.+|-|==-+|+.-|..+|-.=.||||||-. ...+++|.-+
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg~~ 57 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQT 57 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSC
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhCCC
Confidence 68999999999999999999999999998999999853 3455555433
No 2
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.84 E-value=20 Score=24.42 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=44.1
Q ss_pred CceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCcee
Q 019688 251 GKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACF 320 (337)
Q Consensus 251 ~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LV 320 (337)
.+.+.|||..+. ---|.|++.|.+...... +.+..+..-..=.+.+....++|+.+|-=..+.+.-+
T Consensus 3 ~~~~ti~V~~~~-~te~~L~~~F~~~G~I~~--v~~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l 69 (79)
T d2bz2a1 3 RKGNTLYVYGED-MTPTLLRGAFSPFGNIID--LSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 69 (79)
T ss_dssp CCCCEEEEECSS-CCHHHHHHHHSTTCCCSC--EEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEECCC-CCHHHHHHHHhccCccce--eeeccCCCEEEEEEcccHHHHHHHHHhCCCEECCEEE
Confidence 345689999985 457899999988865433 4444444444445677778889988875444444433
No 3
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=43.48 E-value=8.1 Score=30.79 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=44.1
Q ss_pred eeEEEEecc-----ChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccc----------hhhhhHHHHHHHHhhhcC
Q 019688 253 SKAVLITSL-----IPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMN----------NVHNQMALAEINLLRMMD 317 (337)
Q Consensus 253 ~~aVlVtSL-----~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~----------~~h~~kAlaEm~LLS~sD 317 (337)
+|.|++|+= ..++.+++++..-++++..| ..||.|-......... ....+-.-.|+-.+.-||
T Consensus 2 ~k~IYlAgP~F~~~q~~~~~~~~~~L~~~~~~~~--~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD 79 (156)
T d1f8ya_ 2 KKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDL--ENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND 79 (156)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHCTTBCC--TTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHHHhccccCC--ceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence 357888874 36888999999999888877 4467674322111110 011233457999999999
Q ss_pred ceee
Q 019688 318 ACFS 321 (337)
Q Consensus 318 ~LVt 321 (337)
++|.
T Consensus 80 ~via 83 (156)
T d1f8ya_ 80 IMLG 83 (156)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 4
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.77 E-value=34 Score=23.74 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=38.8
Q ss_pred eEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcc--hhccccchhhhhHHH
Q 019688 254 KAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHE--VTEHSMNNVHNQMAL 307 (337)
Q Consensus 254 ~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe--~~Q~~~~~~h~~kAl 307 (337)
+.|+|..+.++-.|.+.+.|.+. |+++.+.-+... .+=.+.+..+.++||
T Consensus 5 ~wV~V~G~p~~~~~~il~~F~~~----G~I~~~~~~~~~~~~fV~f~~~~~A~~Al 56 (81)
T d1wwha1 5 TWVTVFGFPQASASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKAL 56 (81)
T ss_dssp GEEEEECCCGGGHHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHH
T ss_pred cEEEEECCChHHHHHHHHHHHhh----hhhheEEecCCCCEEEEEEcccHHHHHHH
Confidence 47999999999889988888766 677888766543 344577888888997
No 5
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=27.11 E-value=42 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHHHhCCeeeeeC
Q 019688 10 SECRYFVWIARAGLGNRILSIASAFLYPILTNRVLLINE 48 (337)
Q Consensus 10 ~~CkYlV~~~~~GLGNRmLsl~SaFLYAlLT~RvLLVd~ 48 (337)
.+-|-+|..+.+|-|=-.+++.=|...|-.-.|||+||.
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~ 56 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS 56 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 345677777899999999999999999998899999995
No 6
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.40 E-value=51 Score=22.30 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=47.4
Q ss_pred ceeEEEEeccChHH-HHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCcee
Q 019688 252 KSKAVLITSLIPSY-YEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACF 320 (337)
Q Consensus 252 ~~~aVlVtSL~~~y-~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LV 320 (337)
+.+.|+|..|..+. -+.|++.|.+... ++.+.+..+.+-..=.+.+..+.++|+..|-=..+.+.-|
T Consensus 7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~--i~~~~~~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i 74 (86)
T d2cpda1 7 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 74 (86)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHhhcccce--eeeEEEccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEE
Confidence 34689999997744 5678899877653 4567777777777777788888999988764333333333
No 7
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=26.13 E-value=32 Score=27.74 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=49.8
Q ss_pred CCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCceeeeCCcc
Q 019688 250 KGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACFSHKRRV 326 (337)
Q Consensus 250 ~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LVtS~~ST 326 (337)
+.+++++++.++.-.|+..+.+---+....-|=.+.+..|+.. + ...|.+.+|..+-.-.|.+|+++..+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~------d-~~~q~~~i~~~i~~~~dgIIi~~~~~ 71 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEP------S-VSGQVQLVNNFVNQGYDAIIVSAVSP 71 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSC------C-HHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC------C-HHHHHHHHHHHHhcCCCeeeeccccc
Confidence 4577899999999999998877766665555622334345542 2 23567888888888999999987654
No 8
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}
Probab=25.94 E-value=80 Score=24.54 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=39.8
Q ss_pred eeEEEEecc-----ChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccc-------cchh----hhhHHHHHHHHhhhc
Q 019688 253 SKAVLITSL-----IPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHS-------MNNV----HNQMALAEINLLRMM 316 (337)
Q Consensus 253 ~~aVlVtSL-----~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~-------~~~~----h~~kAlaEm~LLS~s 316 (337)
.+.|++|+= ..++.+++++...++++ ++.||.|-..+.... +... ..+=.-.|+-.+.-|
T Consensus 7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~----~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~s 82 (167)
T d1s2da_ 7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPS----IAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNA 82 (167)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHHTTCTT----EEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHHHhCCC----cceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHC
Confidence 457888882 35677888888876654 378998854332111 1000 112234588889999
Q ss_pred Cceee
Q 019688 317 DACFS 321 (337)
Q Consensus 317 D~LVt 321 (337)
|.+|.
T Consensus 83 D~vIA 87 (167)
T d1s2da_ 83 TCGVF 87 (167)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98875
No 9
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=20.49 E-value=82 Score=24.82 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=45.5
Q ss_pred CCCceeEEEEeccChHHHHHHHHHhccCCcCCccEEEEEcCCcchhccccchhhhhHHHHHHHHhhhcCceeeeCCc
Q 019688 249 GKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTEHSMNNVHNQMALAEINLLRMMDACFSHKRR 325 (337)
Q Consensus 249 ~~~~~~aVlVtSL~~~y~e~lr~~y~~~~t~~Ge~v~V~qpShe~~Q~~~~~~h~~kAlaEm~LLS~sD~LVtS~~S 325 (337)
|+.+.++|+|.++...||..+-+-..+.....|=.+.++. +. +....+++..|..+-.-.|.+|..+..
T Consensus 1 kkt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~-------~~~~~e~~~i~~~~~~~vdgii~~~~~ 69 (275)
T d2nzug1 1 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN-SD-------QNQDKELHLLNNMLGKQVDGIIFMSGN 69 (275)
T ss_dssp CCCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CT-------TCHHHHHHHHHHHHTTCCSEEEECCSC
T ss_pred CcCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE-CC-------CCHHHHHHHHHHHHhcCCceeeccccc
Confidence 3457889999998877777766655554444553343433 22 123456778888888889999987754
No 10
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}
Probab=19.26 E-value=61 Score=26.71 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=34.5
Q ss_pred EEEecCCCCchHHHHHHHHHHhhhcCCCCCCCCCCCccCCCCCCceeEEEEeccChHHHHHHHHHhccC
Q 019688 208 IRIFHKNSSPFQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKH 276 (337)
Q Consensus 208 IR~f~~~~~p~~~~~~qi~~C~~~e~lLP~v~~~~~~~~~~~~~~~~aVlVtSL~~~y~e~lr~~y~~~ 276 (337)
||-|..+++| ++.+++|+.|++. ++++.+...-.++|.++ ++--++|.....+.
T Consensus 14 iR~F~~~pV~-~e~i~~il~aA~~-------------APS~~N~Qpw~~ivV~d-~e~~~~l~~~~~~~ 67 (249)
T d1zcha1 14 IRSYTDEPVA-QEQLDQIIEAVQS-------------APSSINGQQVTVITVQD-KERKKKISELAGGQ 67 (249)
T ss_dssp CCCBCSCCCC-HHHHHHHHHHHHH-------------SCCGGGCCCEEEEEECC-HHHHHHHHHHTTCC
T ss_pred cccCCCCCCC-HHHHHHHHHHHHh-------------CcCcccCCCeEEEEEec-chHHHHHHHHhccC
Confidence 5889888777 6788999999965 22333333334444443 66777777665433
Done!