Query 019689
Match_columns 337
No_of_seqs 131 out of 1325
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.6E-42 3.4E-47 335.6 21.9 291 7-326 146-437 (437)
2 KOG1304 Amino acid transporter 100.0 2.9E-41 6.2E-46 322.6 23.9 269 19-323 175-449 (449)
3 PLN03074 auxin influx permease 100.0 7.6E-40 1.7E-44 322.7 23.1 281 20-337 167-465 (473)
4 PTZ00206 amino acid transporte 100.0 2.7E-38 5.9E-43 312.3 19.2 274 25-324 184-465 (467)
5 KOG4303 Vesicular inhibitory a 100.0 5.8E-37 1.3E-41 278.7 1.6 289 20-332 235-523 (524)
6 PF01490 Aa_trans: Transmembra 100.0 6E-35 1.3E-39 283.6 -0.8 281 19-320 120-408 (409)
7 KOG1305 Amino acid transporter 100.0 5E-29 1.1E-33 240.4 22.6 272 26-324 131-406 (411)
8 COG0814 SdaC Amino acid permea 99.7 1.2E-14 2.5E-19 141.9 22.0 240 21-289 126-381 (415)
9 TIGR00837 araaP aromatic amino 99.2 2.2E-09 4.8E-14 103.7 19.1 234 23-291 114-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.6 7.7E-06 1.7E-10 79.6 21.1 172 95-293 182-367 (394)
11 PRK15132 tyrosine transporter 98.4 6.6E-05 1.4E-09 73.1 20.7 169 99-292 183-363 (403)
12 PRK10483 tryptophan permease; 98.4 6E-05 1.3E-09 73.4 20.1 168 98-291 193-373 (414)
13 TIGR03813 put_Glu_GABA_T putat 98.3 0.00013 2.8E-09 72.7 22.5 54 105-161 202-255 (474)
14 PRK09664 tryptophan permease T 98.2 0.00024 5.3E-09 69.2 20.8 169 98-291 194-374 (415)
15 TIGR00814 stp serine transport 98.0 0.00021 4.6E-09 69.5 15.3 178 97-288 186-376 (397)
16 TIGR03810 arg_ornith_anti argi 97.9 0.0033 7.2E-08 62.6 23.1 59 98-160 196-254 (468)
17 TIGR00913 2A0310 amino acid pe 97.9 0.006 1.3E-07 60.8 23.9 55 96-153 196-250 (478)
18 PRK11021 putative transporter; 97.9 0.0053 1.1E-07 60.0 23.1 57 95-154 175-231 (410)
19 PRK10655 potE putrescine trans 97.9 0.005 1.1E-07 60.6 23.0 56 98-156 190-245 (438)
20 TIGR00910 2A0307_GadC glutamat 97.9 0.0029 6.2E-08 63.7 21.3 51 99-152 196-246 (507)
21 PRK15049 L-asparagine permease 97.9 0.0029 6.4E-08 63.5 21.2 59 97-158 220-278 (499)
22 PRK10435 cadB lysine/cadaverin 97.8 0.0043 9.3E-08 61.2 21.9 60 95-157 185-244 (435)
23 PRK10644 arginine:agmatin anti 97.8 0.0046 9.9E-08 61.1 22.2 55 98-155 192-246 (445)
24 PRK10746 putative transport pr 97.8 0.0053 1.1E-07 61.1 22.5 57 96-155 199-255 (461)
25 PRK10197 gamma-aminobutyrate t 97.8 0.0067 1.4E-07 60.1 22.8 56 96-154 180-235 (446)
26 PRK10238 aromatic amino acid t 97.8 0.0041 8.9E-08 61.7 21.2 51 98-151 201-251 (456)
27 PRK10249 phenylalanine transpo 97.8 0.0074 1.6E-07 59.9 23.0 56 97-155 209-264 (458)
28 PRK11387 S-methylmethionine tr 97.8 0.006 1.3E-07 60.8 22.0 56 97-155 206-261 (471)
29 PF13520 AA_permease_2: Amino 97.7 0.0093 2E-07 58.3 22.3 59 99-162 190-248 (426)
30 PRK13629 threonine/serine tran 97.7 0.0089 1.9E-07 58.7 21.5 177 98-288 210-412 (443)
31 PRK11357 frlA putative fructos 97.7 0.0087 1.9E-07 59.1 21.2 56 97-155 195-250 (445)
32 TIGR01773 GABAperm gamma-amino 97.7 0.01 2.2E-07 58.7 21.7 57 97-156 201-257 (452)
33 PRK10580 proY putative proline 97.7 0.02 4.3E-07 56.8 23.5 55 97-154 199-253 (457)
34 TIGR00911 2A0308 L-type amino 97.7 0.0068 1.5E-07 60.9 20.3 58 96-156 234-291 (501)
35 PRK15238 inner membrane transp 97.6 0.019 4.1E-07 57.7 23.2 54 98-154 212-265 (496)
36 TIGR00907 2A0304 amino acid pe 97.6 0.024 5.1E-07 56.6 22.4 60 98-160 218-277 (482)
37 PRK11049 D-alanine/D-serine/gl 97.5 0.02 4.3E-07 57.0 21.8 57 97-156 211-267 (469)
38 TIGR00905 2A0302 transporter, 97.5 0.022 4.9E-07 56.7 22.0 56 97-156 199-254 (473)
39 TIGR00908 2A0305 ethanolamine 97.5 0.012 2.7E-07 57.9 19.7 54 97-153 191-244 (442)
40 TIGR00909 2A0306 amino acid tr 97.5 0.024 5.2E-07 55.5 21.3 57 97-156 195-251 (429)
41 PRK10836 lysine transporter; P 97.4 0.06 1.3E-06 53.9 23.8 58 98-158 206-263 (489)
42 TIGR00906 2A0303 cationic amin 97.4 0.015 3.3E-07 59.3 19.4 112 37-155 174-286 (557)
43 TIGR03428 ureacarb_perm permea 97.3 0.17 3.7E-06 50.4 25.4 61 98-161 214-274 (475)
44 COG0531 PotE Amino acid transp 97.2 0.05 1.1E-06 53.6 20.4 61 98-161 202-262 (466)
45 KOG1287 Amino acid transporter 97.2 0.029 6.4E-07 55.4 17.8 245 19-294 128-389 (479)
46 TIGR00930 2a30 K-Cl cotranspor 97.2 0.051 1.1E-06 58.8 21.2 53 99-154 282-334 (953)
47 COG1113 AnsP Gamma-aminobutyra 95.9 0.41 8.8E-06 47.0 15.5 70 95-167 201-275 (462)
48 PF00324 AA_permease: Amino ac 94.1 0.12 2.6E-06 51.5 6.7 64 96-162 199-262 (478)
49 KOG1289 Amino acid transporter 94.0 6.7 0.00014 39.6 18.2 72 96-170 251-322 (550)
50 TIGR00912 2A0309 spore germina 93.5 4.6 9.9E-05 38.5 16.3 56 104-163 186-241 (359)
51 KOG1286 Amino acid transporter 93.0 2.6 5.7E-05 42.9 14.1 55 96-153 231-285 (554)
52 COG0833 LysP Amino acid transp 87.3 36 0.00078 34.5 22.6 124 21-151 158-285 (541)
53 PF03845 Spore_permease: Spore 81.4 10 0.00023 35.5 9.2 64 95-162 173-236 (320)
54 TIGR00796 livcs branched-chain 81.3 55 0.0012 31.8 18.0 50 101-156 188-241 (378)
55 COG0814 SdaC Amino acid permea 76.1 39 0.00084 33.2 11.6 50 240-289 324-374 (415)
56 KOG2082 K+/Cl- cotransporter K 71.9 1.4E+02 0.0031 31.7 15.8 62 251-314 556-620 (1075)
57 COG1457 CodB Purine-cytosine p 69.8 1.2E+02 0.0026 30.1 19.8 143 111-284 208-355 (442)
58 TIGR02358 thia_cytX probable h 67.9 1.2E+02 0.0026 29.3 19.5 45 114-162 190-234 (386)
59 PRK11375 allantoin permease; P 66.6 1.5E+02 0.0032 29.8 20.0 21 261-281 373-393 (484)
60 TIGR00800 ncs1 NCS1 nucleoside 61.6 1.7E+02 0.0037 28.8 18.3 49 111-163 222-274 (442)
61 KOG4812 Golgi-associated prote 61.2 24 0.00052 31.8 5.8 79 246-328 161-255 (262)
62 PRK09442 panF sodium/panthothe 59.3 1.9E+02 0.0042 28.7 21.6 35 123-161 263-300 (483)
63 PF00474 SSF: Sodium:solute sy 54.7 78 0.0017 30.5 9.0 39 21-59 118-156 (406)
64 PRK13183 psbN photosystem II r 46.9 23 0.00049 23.3 2.5 33 133-165 4-36 (46)
65 COG1914 MntH Mn2+ and Fe2+ tra 45.9 1.4E+02 0.003 29.5 9.0 54 238-291 325-378 (416)
66 TIGR02119 panF sodium/pantothe 44.4 3.3E+02 0.0071 27.0 20.1 35 22-56 156-190 (471)
67 CHL00020 psbN photosystem II p 38.6 26 0.00056 22.7 1.8 29 137-165 5-33 (43)
68 PF02468 PsbN: Photosystem II 37.4 35 0.00076 22.1 2.3 28 138-165 6-33 (43)
69 PRK12287 tqsA pheromone autoin 34.4 2.9E+02 0.0064 26.1 9.3 85 249-333 227-334 (344)
70 PHA02680 ORF090 IMV phosphoryl 33.2 1.5E+02 0.0032 22.4 5.3 60 101-165 15-74 (91)
71 TIGR00327 secE_euk_arch protei 31.8 68 0.0015 22.5 3.2 30 123-158 20-49 (61)
72 COG4478 Predicted membrane pro 31.0 1.4E+02 0.0029 26.1 5.5 24 301-324 126-149 (210)
73 COG3763 Uncharacterized protei 30.1 1.4E+02 0.003 21.6 4.5 30 303-332 8-38 (71)
74 PRK09400 secE preprotein trans 30.0 76 0.0016 22.2 3.2 30 122-157 23-52 (61)
75 PF04835 Pox_A9: A9 protein co 29.3 1.6E+02 0.0035 20.0 4.5 33 131-164 20-52 (54)
76 COG3476 Tryptophan-rich sensor 28.9 1.7E+02 0.0036 24.9 5.6 51 109-165 23-74 (161)
77 PF05805 L6_membrane: L6 membr 28.5 1.6E+02 0.0035 25.7 5.7 64 263-326 45-118 (195)
78 PRK15419 proline:sodium sympor 28.4 6.1E+02 0.013 25.4 20.2 16 146-161 283-298 (502)
79 PHA03048 IMV membrane protein; 25.4 1.9E+02 0.0041 21.9 4.8 60 101-166 15-74 (93)
80 PRK11026 ftsX cell division AB 25.3 3.5E+02 0.0075 25.4 7.9 25 303-327 282-306 (309)
81 PRK04949 putative sulfate tran 24.8 5.3E+02 0.011 23.4 13.2 35 121-160 19-53 (251)
82 COG2443 Sss1 Preprotein transl 23.9 1.1E+02 0.0023 21.8 3.1 30 123-158 25-54 (65)
83 TIGR00439 ftsX putative protei 22.6 4.4E+02 0.0095 24.7 8.0 26 302-327 281-306 (309)
84 PF08019 DUF1705: Domain of un 21.2 3.3E+02 0.0072 22.5 6.2 10 279-288 77-86 (156)
85 TIGR02121 Na_Pro_sym sodium/pr 21.0 8.3E+02 0.018 24.3 20.5 31 131-161 261-294 (487)
86 PF11188 DUF2975: Protein of u 20.1 1.8E+02 0.004 22.9 4.3 17 319-335 42-58 (136)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=335.64 Aligned_cols=291 Identities=40% Similarity=0.670 Sum_probs=248.2
Q ss_pred ccccccCCCCCCCcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCccccc
Q 019689 7 SNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS 86 (337)
Q Consensus 7 ~~~~~~~~~~~~c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~ 86 (337)
..|++...|.+.++++.+.|+++++++++|++++||++.++|+|..+.++++.|+.+.+..++..+.+....+++.. +
T Consensus 146 L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~--~ 223 (437)
T KOG1303|consen 146 LKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYL--D 223 (437)
T ss_pred HHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcc--c
Confidence 34455554444337778899999999999999999999999999999999999999888888776654321111111 1
Q ss_pred ccccCchhhHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcc
Q 019689 87 IGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~ 166 (337)
++ ... ..++++|++.|+|+||+++||||++||+| ++|+|++..++.+++.+|+.+++.||++|||+++++
T Consensus 224 ~~---~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~ 293 (437)
T KOG1303|consen 224 LG---TIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDN 293 (437)
T ss_pred CC---CCc---chhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchh
Confidence 11 111 11899999999999999999999999999 789999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHH
Q 019689 167 LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTI 246 (337)
Q Consensus 167 il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~ 246 (337)
++.|++ +|.|+.+.+|+++.+|++.+|+++++|+++.+|++....+++ +.+ +....|.++|+.
T Consensus 294 il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~~-------------~~~~~R~~~Rt~ 356 (437)
T KOG1303|consen 294 ILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FKK-------------RSLVLRLLVRTF 356 (437)
T ss_pred hhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--ccc-------------cccceeeehhhH
Confidence 999995 588899999999999999999999999999999988654321 100 123789999999
Q ss_pred HHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019689 247 FVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQIL-SVACLIITIAAAAGSIAGVVT 325 (337)
Q Consensus 247 ~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~i-~v~~ii~gv~gt~~si~~ii~ 325 (337)
+++.++++|+.+|+|+++++++||+...++++++|+++|++++|.++++.+|+.++.+ .++++++|+...++++++++.
T Consensus 357 ~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 357 FVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999988888 799999999999999998875
Q ss_pred h
Q 019689 326 D 326 (337)
Q Consensus 326 ~ 326 (337)
+
T Consensus 437 ~ 437 (437)
T KOG1303|consen 437 D 437 (437)
T ss_pred C
Confidence 3
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=322.61 Aligned_cols=269 Identities=18% Similarity=0.238 Sum_probs=228.8
Q ss_pred CcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHH
Q 019689 19 CHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWR 98 (337)
Q Consensus 19 c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (337)
=+++.+.|+++..+..++++++||+|+|+++|++|++..++...++ .++..++.+. .++ .+...++.+
T Consensus 175 ~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii----~~y~~~~~~~---~~~-----~~~~~~~~~ 242 (449)
T KOG1304|consen 175 GVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAII----MYYLVQDLPP---TSD-----LPAVTGWSG 242 (449)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhccCC---ccc-----cccccchhh
Confidence 4588999999999999999999999999999999999877543333 3334444331 111 111223457
Q ss_pred HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhh---hHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCC
Q 019689 99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMK---KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYN 175 (337)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~---~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~ 175 (337)
.+..+|+.+|||+|++++.|+||+||+| ++|. ++++.++.+++++|+.+|++||++|||++++.|+.|+|+
T Consensus 243 ~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-- 316 (449)
T KOG1304|consen 243 LPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-- 316 (449)
T ss_pred hHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc--
Confidence 8899999999999999999999999999 9999 999999999999999999999999999999999999983
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHH
Q 019689 176 PYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVIS 255 (337)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iA 255 (337)
+++.+.+++++++.+..+||++.+|..+.+|+.+.++..+ + +.++....+|+.++++++.+|
T Consensus 317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----~------------~~~~~~~~~R~~lVllt~~iA 378 (449)
T KOG1304|consen 317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE-----N------------RKKLLEYALRVFLVLLTFLIA 378 (449)
T ss_pred -cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc-----c------------hhHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999987654321 0 012677899999999999999
Q ss_pred HHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019689 256 MLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK---WSTKWLCLQILSVACLIITIAAAAGSIAGV 323 (337)
Q Consensus 256 i~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~---~~~~~~~~~~i~v~~ii~gv~gt~~si~~i 323 (337)
.++|+++++++|+||++++.+++++|++++++.+.++. +.++++.|.++.++|++..+.|||.|+.++
T Consensus 379 ~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 379 VAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999999976543 456777898899999999999999998764
No 3
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=7.6e-40 Score=322.68 Aligned_cols=281 Identities=19% Similarity=0.215 Sum_probs=222.0
Q ss_pred cCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHH
Q 019689 20 HMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRS 99 (337)
Q Consensus 20 ~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (337)
.++.+.|+++++++++|++++|++++++|+|++|..+++.+...+++.++..+ .+ ++.+. +...+....
T Consensus 167 ~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~---~~-----~~~~~---~~~~~~~~~ 235 (473)
T PLN03074 167 NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG---QV-----EGVKH---SGPTKLVLY 235 (473)
T ss_pred CcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC-----CCCCC---CCchhHHHH
Confidence 36789999999999999999999999999999998865543233232222221 11 11110 011244567
Q ss_pred HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCc--ccccccCCCCCh
Q 019689 100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG--NLLTGFGFYNPY 177 (337)
Q Consensus 100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~--~il~n~~~~~~~ 177 (337)
+.++++++|||+||+++||||+||||| +||++++..+...++.+|..+|+.||++|||++++ +.+.|+|. +.
T Consensus 236 f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~--~~ 309 (473)
T PLN03074 236 FTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR--SG 309 (473)
T ss_pred HHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC--ch
Confidence 788899999999999999999999999 89999999999999999999999999999999764 45667862 22
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 019689 178 WLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISML 257 (337)
Q Consensus 178 ~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~ 257 (337)
....++++..++++.+|+++..|+.+.+|+..... + ++ ....|.++|+.++++++++|+.
T Consensus 310 -~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~----~k-------------~~~~r~~~R~~lv~~~~~iA~~ 369 (473)
T PLN03074 310 -WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--D----TK-------------SICLRALARLPVVVPIWFLAII 369 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c----cc-------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999988875321 1 11 1267899999999999999999
Q ss_pred ccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCC-------------Cchhh--HHHHHHHHHHHHHHH-HHHHHHHHH
Q 019689 258 LPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP-------------KWSTK--WLCLQILSVACLIIT-IAAAAGSIA 321 (337)
Q Consensus 258 iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~-------------~~~~~--~~~~~~i~v~~ii~g-v~gt~~si~ 321 (337)
+|+|+++++|+||++++.++|++|+++|+++++++ ...++ .+.|+.+.+++.++| +.|+++|++
T Consensus 370 IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~ 449 (473)
T PLN03074 370 FPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMT 449 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHH
Confidence 99999999999999999999999999999865332 11122 256777777666665 689999999
Q ss_pred HHHHhccccccCccCC
Q 019689 322 GVVTDLKSYKPFSTSY 337 (337)
Q Consensus 322 ~ii~~~~~~~~f~~~~ 337 (337)
++++++++++.|++.|
T Consensus 450 ~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 450 NFVRQIDTFGLFAKCY 465 (473)
T ss_pred HHHHhhhhhhhhhhhc
Confidence 9999999988888764
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.7e-38 Score=312.27 Aligned_cols=274 Identities=15% Similarity=0.186 Sum_probs=206.5
Q ss_pred chhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCccccc---cc--ccCchhhHHHH
Q 019689 25 PYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS---IG--TVSETQKIWRS 99 (337)
Q Consensus 25 ~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~ 99 (337)
.+.+++.++++||+++|++++|+|+|.+|+++.+.....+++.+...+ .+.+ .++.+ |+ .........++
T Consensus 184 ~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~---~~~~--~~~~~~~~~~~~~~~~f~~~~~~ 258 (467)
T PTZ00206 184 LTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNG---LPEN--IKNVSVGKDDNAEIILFNSGNRA 258 (467)
T ss_pred eeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhccc---Cccc--ccccccCCCCCCceEEecCchHH
Confidence 455667788999999999999999999998765543333333332221 1110 11111 00 00011112367
Q ss_pred HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChHH
Q 019689 100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL 179 (337)
Q Consensus 100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~~ 179 (337)
+.++|+++|||+||.+.||+++||||| +.+||.+++..++.+++++|..+|++||++||++++++++.|++.. .+..
T Consensus 259 ~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~-~~~~ 335 (467)
T PTZ00206 259 IEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV-NEPA 335 (467)
T ss_pred HhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC-CCch
Confidence 899999999999999999999999996 4589999999999999999999999999999999999999999422 1234
Q ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHcc
Q 019689 180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP 259 (337)
Q Consensus 180 ~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~iP 259 (337)
..+++++..+.+..+||++.+|+++.+++.+.. ++. + . + .+++...|..++++++++|+++|
T Consensus 336 ~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--~~~----~---~--~-------~~~~~~~~~~l~~~~l~iAi~vP 397 (467)
T PTZ00206 336 IMVGFVGVLVKLFVSYALLGMACRNALYDVIGW--DAR----K---V--A-------FWKHCIAVVTLSVVMLLCGLFIP 397 (467)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--Ccc----c---C--c-------hhhHHHHHHHHHHHHHHHHhccC
Confidence 567778888889999999999999988887532 110 0 0 1 14555667777778899999999
Q ss_pred chHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019689 260 FFNDVVGLLGALGFWPLTVYFPVEMYIAQKKI---PKWSTKWLCLQILSVACLIITIAAAAGSIAGVV 324 (337)
Q Consensus 260 ~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~---~~~~~~~~~~~~i~v~~ii~gv~gt~~si~~ii 324 (337)
+++++++++||++++.++|++|++||++.... +....+|+.++++.++|++.+++||++|+.+.+
T Consensus 398 ~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 398 KINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred CHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999999999999985322 222233456788888999999999999999876
No 5
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-37 Score=278.72 Aligned_cols=289 Identities=17% Similarity=0.235 Sum_probs=239.3
Q ss_pred cCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHH
Q 019689 20 HMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRS 99 (337)
Q Consensus 20 ~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (337)
.++.+-|+++.++.++|.++++++|-.+-+|+.+.++.++...+++.+|+....+ + .|+.+...-+..+.
T Consensus 235 svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-----W-----~wskv~Fsidi~~f 304 (524)
T KOG4303|consen 235 SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSD-----W-----SWSKVTFSIDINTF 304 (524)
T ss_pred CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----c-----cceeEEEEEEcccC
Confidence 3789999999999999999999999999999999999999888888888764322 2 22222223334467
Q ss_pred HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChHH
Q 019689 100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL 179 (337)
Q Consensus 100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~~ 179 (337)
+.++|+++|+|+.|..+|+++.+|++| .+|+-++.++.+..+++...+|.+||++|||++|+.|++|+|.+ ..
T Consensus 305 PisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q---sf 377 (524)
T KOG4303|consen 305 PISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ---SF 377 (524)
T ss_pred ceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc---ch
Confidence 789999999999999999999999999 89999999999999999999999999999999999999999732 35
Q ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHcc
Q 019689 180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP 259 (337)
Q Consensus 180 ~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~iP 259 (337)
..++|+..++..+.|||+-..-..+.+|+-+.+-.|+..|. +-++ |. |+ .+.+.+-+|..+++.+.++|+.+|
T Consensus 378 k~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fp-scys---~D-g~--Lk~WgltlR~~lvvfTllmAi~vP 450 (524)
T KOG4303|consen 378 KILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFP-SCYS---PD-GS--LKEWGLTLRIILVVFTLLMAISVP 450 (524)
T ss_pred hhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCc-eeeC---CC-cc--hhhheeeeeeHHHHHHHHHHHHhH
Confidence 67889999999999998765556666676555544554442 1222 11 21 124456799999999999999999
Q ss_pred chHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019689 260 FFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKP 332 (337)
Q Consensus 260 ~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~i~v~~ii~gv~gt~~si~~ii~~~~~~~~ 332 (337)
+|..+|+++|+++++.++||.|++||++++++.....++..++.+.+.|.++++.|.|.|..++|+++++..+
T Consensus 451 hf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 451 HFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 9999999999999999999999999999987665555566788889999999999999999999999987554
No 6
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=6e-35 Score=283.61 Aligned_cols=281 Identities=26% Similarity=0.336 Sum_probs=213.2
Q ss_pred CcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHH
Q 019689 19 CHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWR 98 (337)
Q Consensus 19 c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (337)
...++..|+++..++++||+++|+++++++.|.+|.++.+.++.+.+...... ....+.+.+.+ ......+..+
T Consensus 120 ~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~ 193 (409)
T PF01490_consen 120 LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISY-GPGEPSGVPSP-----PVWPFISFSG 193 (409)
T ss_pred ccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeee-ecccccccccc-----cccccchhhH
Confidence 45678899999999999999999999999999999886653211222111111 11111111111 1112335568
Q ss_pred HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhh---hHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCC
Q 019689 99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMK---KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYN 175 (337)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~---~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~ 175 (337)
.+.++|+++|||++|.++||+++|||+| ++|+ +++..++.+++++|..+|+.||++|||+++++++.|+|.
T Consensus 194 ~~~~~~i~~faf~~~~~~~~i~~~m~~~----~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~-- 267 (409)
T PF01490_consen 194 FFSAFGIIIFAFSCHPNLPPIQSEMKDP----SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPN-- 267 (409)
T ss_pred HHHhhhhhhhhhhcccccceeeeeccCC----ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCC--
Confidence 9999999999999999999999999998 5555 899999999999999999999999999999999999973
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHH
Q 019689 176 PYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVIS 255 (337)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iA 255 (337)
+++...+++++..++++.+||+...|.++.+|+.+.+.....+. +.+ . + ...+++|...|+.+++.++++|
T Consensus 268 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~~--~--~----~~~~~~~~~~~~~~~~~~~~iA 338 (409)
T PF01490_consen 268 DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRD-SPK--N--T----PSSRWLRYLIRIILVLLSFLIA 338 (409)
T ss_pred cccccccccccchhhhhhccccccchhHhhhhhheecccccccc-ccc--c--c----cccceeeeeeecchhhhhhhhh
Confidence 23467788999999999999999999999999987542000000 000 0 0 0112678999999999999999
Q ss_pred HHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 019689 256 MLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL-----CLQILSVACLIITIAAAAGSI 320 (337)
Q Consensus 256 i~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~-----~~~~i~v~~ii~gv~gt~~si 320 (337)
+.+|+++++++++||++++.++|++|+++|+|.+++++++.+++ .++++.++|++..+.|++.++
T Consensus 339 ~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 339 IFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999999999999999999999999999999987665433332 244556667777777776654
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.97 E-value=5e-29 Score=240.37 Aligned_cols=272 Identities=19% Similarity=0.273 Sum_probs=206.6
Q ss_pred hhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHHHHHHHH
Q 019689 26 YMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGD 105 (337)
Q Consensus 26 ~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 105 (337)
|.++...+..||++.|+++++++.|.++.++.+..+.++++....... ..++.... ......+++.+.++++
T Consensus 131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~pi 202 (411)
T KOG1305|consen 131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPC-ALGRLSYL-------VPNLSSFSSLFYALPI 202 (411)
T ss_pred eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCcccc-------cCCcchhhhhhhhhhh
Confidence 678888899999999999999999999998776654444443322111 00111111 1112222578899999
Q ss_pred HHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChH----HHH
Q 019689 106 IAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYW----LLD 181 (337)
Q Consensus 106 ~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~----~~~ 181 (337)
++|||.||.+..++++||||| |++++.++...+...+..+|..+|.+||++|||++.+|++.++|...... ...
T Consensus 203 ~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~ 280 (411)
T KOG1305|consen 203 FVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLL 280 (411)
T ss_pred hheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHH
Confidence 999999999999999999998 77899999999999999999999999999999999999999998432221 246
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHccch
Q 019689 182 IANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFF 261 (337)
Q Consensus 182 ~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~iP~f 261 (337)
.++..+.++.+..+|+..+|++..++..+.+..|+.+ + + ...++.++...++..+.+.|+.+|++
T Consensus 281 ~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~---~------~------s~~r~~~itl~ll~~~~l~ai~~p~i 345 (411)
T KOG1305|consen 281 CVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT---S------F------SGKRHFVITLLLLIFTFLLAIFVPSI 345 (411)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC---C------c------cceehhHHHHHHHHHHHHHHHHhccH
Confidence 7888999999999999999999998776654333210 0 0 01456778888899999999999999
Q ss_pred HHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019689 262 NDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVV 324 (337)
Q Consensus 262 ~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~i~v~~ii~gv~gt~~si~~ii 324 (337)
+++.+++||+++..++||+|+++|++.+|++.++ ....++..++++...++|++.-+.++.
T Consensus 346 ~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~ 406 (411)
T KOG1305|consen 346 GTIFGFVGATSSTSISFILPALYYLKASKKKSRE--PLGALIFLILGVLLSIIGVAVMIYDLL 406 (411)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHhhheeecccccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987763322 333344555666666666555555544
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.66 E-value=1.2e-14 Score=141.88 Aligned_cols=240 Identities=16% Similarity=0.167 Sum_probs=158.7
Q ss_pred CCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHHH
Q 019689 21 MNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSF 100 (337)
Q Consensus 21 ~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (337)
.+++.+.+++..++.++++.++...++..|.+.....+..+.+. .+......+.. ...+...+ ...+.+..
T Consensus 126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~----~~~~~~~~~~~----l~~~~~~~-~~~~~~~~ 196 (415)
T COG0814 126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV----VYLIPHWNPAN----LFALPSAS-QSFWKYLL 196 (415)
T ss_pred cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCHHH----Hhcccccc-hhhHHHHH
Confidence 67788889999999999999999999999999987655422222 22111111000 00000000 12344677
Q ss_pred HHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChHHH
Q 019689 101 QALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180 (337)
Q Consensus 101 ~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~~~ 180 (337)
.++|+++|||++|+++|++++|||+++ .++.+|+...+..+..++|..++..+|..+|++++++++.+.++. ....
T Consensus 197 ~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~--~~~l 272 (415)
T COG0814 197 LAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN--ISLL 272 (415)
T ss_pred HHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch--HHHH
Confidence 999999999999999999999999973 233999999999999999999999999999999999999998632 2211
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHH--------------HHHHHhhcCCCCCcccCccccccCCCcccccchhH--HHHH
Q 019689 181 DIANAAIVIHLVGAYQVFCQPLFAF--------------IEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR--LVWR 244 (337)
Q Consensus 181 ~~~~~~~~i~~~~s~~l~~~p~~~~--------------~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~--~~~r 244 (337)
. +..........+++.+.++.++. .+....+ .+++ + + ++.++.+ ....
T Consensus 273 ~-~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~----------~--~-r~~~~~~~~~~~~ 336 (415)
T COG0814 273 S-ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSK----------P--G-RKKTGLLTFLPPL 336 (415)
T ss_pred H-HHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCc----------c--c-chhhhhhhHHHHH
Confidence 1 11111122223344444443332 2222221 0100 0 0 0111222 2333
Q ss_pred HHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhc
Q 019689 245 TIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQK 289 (337)
Q Consensus 245 ~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~ 289 (337)
...+......+...|..+.+++.+|+.....+.++.|...+.+..
T Consensus 337 i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~ 381 (415)
T COG0814 337 IFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP 381 (415)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344566667899999999999999999999999999998876654
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.17 E-value=2.2e-09 Score=103.72 Aligned_cols=234 Identities=12% Similarity=0.048 Sum_probs=141.4
Q ss_pred CcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHHHHH
Q 019689 23 SNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQA 102 (337)
Q Consensus 23 ~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (337)
.+.+.+++.+++.++. .+..+..+.++.+.....+....+.++.++.+. + +. ...+.. .......+...+
T Consensus 114 ~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~-~--~~--~~~~~~----~~~~~~~~~~~a 183 (381)
T TIGR00837 114 ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV-K--GD--LLLDVA----LDTSYWPYILSA 183 (381)
T ss_pred HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--HH--HHhcCc----cccccHHHHHHH
Confidence 3444444444444444 445678888877776655443222222222111 1 00 000000 001123367788
Q ss_pred HHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCccccc----------ccC
Q 019689 103 LGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLT----------GFG 172 (337)
Q Consensus 103 ~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~----------n~~ 172 (337)
++...++|++|++++++.+|++||+ |+.+|++..+..+++++|+.+........+.+.-..... ...
T Consensus 184 ~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~ 260 (381)
T TIGR00837 184 LPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQ 260 (381)
T ss_pred HHHHHHHHHcccccHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999998652 899999999999999999988766555554432111110 010
Q ss_pred C-CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHH
Q 019689 173 F-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILT 251 (337)
Q Consensus 173 ~-~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~ 251 (337)
. ....+...+......+.+..++.-.....+|..+..+++. + ++ .+|.....+..+..
T Consensus 261 ~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~----~~---------------~~~~~~~~~~~~~p 319 (381)
T TIGR00837 261 GVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D----SK---------------KGRFKTGLLTFLPP 319 (381)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c----cc---------------CCCchhhhhhHHhH
Confidence 0 0112233455556666677777655555556555544321 0 00 11233344556777
Q ss_pred HHHHHHccchH-HHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019689 252 TVISMLLPFFN-DVVGLLGALGFWPLTVYFPVEMYIAQKKI 291 (337)
Q Consensus 252 ~~iAi~iP~f~-~vlsliGa~~~~~l~fi~P~l~~l~~~~~ 291 (337)
.++|...|+-. ..++..| +.+..+.+++|++++++.||+
T Consensus 320 l~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 320 LVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 88899999877 8999999 889999999999999997754
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.61 E-value=7.7e-06 Score=79.59 Aligned_cols=172 Identities=18% Similarity=0.262 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH--HhHHhh---------hcCCCC
Q 019689 95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC--GCFGYA---------AFGDLS 163 (337)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v--g~~gY~---------~fG~~~ 163 (337)
++...+.++++++++|+.|+++|++.+.+++.+ ||.+|++..+..+..++|+.. .++|=+ .-|++.
T Consensus 182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~---~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~ 258 (394)
T PF03222_consen 182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP---KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV 258 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence 344677999999999999999999999999532 899999999888888888765 233311 111111
Q ss_pred Ccc--cccccCCCCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHH
Q 019689 164 PGN--LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRL 241 (337)
Q Consensus 164 ~~~--il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~ 241 (337)
.+. .+.+.. +..+....+.+...+.+..||-=...-++|.++..++. ++ +. ..|.
T Consensus 259 ~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~-----~~--------------~~r~ 315 (394)
T PF03222_consen 259 SALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KN-----NS--------------SGRL 315 (394)
T ss_pred HHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cc-----cc--------------cchH
Confidence 111 111211 12233445566666777777732223345655555422 11 00 2233
Q ss_pred HHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCC
Q 019689 242 VWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK 293 (337)
Q Consensus 242 ~~r~~~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~ 293 (337)
..-....+..+++|+..|+ |...+++.| ...+.+..++|+++..|.|+++.
T Consensus 316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 3334456667888999986 789999999 99999999999999999875443
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.37 E-value=6.6e-05 Score=73.12 Aligned_cols=169 Identities=12% Similarity=0.149 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-----Ccc-----cc
Q 019689 99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PGN-----LL 168 (337)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-----~~~-----il 168 (337)
...+++++.+||+.|.++|++.+.+++.+ +|-+|++..+..+..++|+.-=......-+.+. +++ ++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 67899999999999999999999998642 899999999998888888866443333333221 111 12
Q ss_pred cccCC-CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHH
Q 019689 169 TGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIF 247 (337)
Q Consensus 169 ~n~~~-~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~ 247 (337)
..+.. .+..+...++.....+.+..||-=...-.+|.++..+++. + +. ..|...-...
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~-----~~--------------~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--N-----TV--------------GGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--c-----cc--------------cCCchhehhh
Confidence 22110 0122334455566566667777323333455555544321 1 00 1234444566
Q ss_pred HHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCC
Q 019689 248 VILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP 292 (337)
Q Consensus 248 v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~ 292 (337)
.+..+++|+..|+ |...+++.|. ..+.+.+++|+++-.|.++.+
T Consensus 319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 7888899999997 7788888886 579999999999999987543
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.36 E-value=6e-05 Score=73.43 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHH--hHHhhh---------cCCCCCcc
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCG--CFGYAA---------FGDLSPGN 166 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg--~~gY~~---------fG~~~~~~ 166 (337)
....+++++.++|+.|+++|++++.+++.. ||.+|++..+..+..++|+.-= +.|-.. -|++...
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d~---~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~- 268 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKDP---KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDV- 268 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHH-
Confidence 466899999999999999999999998631 7999999999999999988742 222111 1222211
Q ss_pred cccccCC-CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHH
Q 019689 167 LLTGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRT 245 (337)
Q Consensus 167 il~n~~~-~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~ 245 (337)
.+..+.. .+..+......+...+.+..||-=...-.+|.++..++. +++ . ..|...-.
T Consensus 269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~----~---------------~~r~~~~~ 327 (414)
T PRK10483 269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS----A---------------MGRFKTAL 327 (414)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeeh
Confidence 1111110 011222334555666667777733333455666655532 110 0 11222233
Q ss_pred HHHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019689 246 IFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKI 291 (337)
Q Consensus 246 ~~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~ 291 (337)
+..+-..++|...|+ |=..++..|.. ...+.-++|+++-++.||+
T Consensus 328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 557788899999997 88899999977 6677789999999998764
No 13
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.34 E-value=0.00013 Score=72.70 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=44.5
Q ss_pred HHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019689 105 DIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 161 (337)
Q Consensus 105 ~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~ 161 (337)
.+.|+|.|-......-+|+|||+ |+.+|++..+...+.++|....+.-...-++
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 46789999999999999999995 8999999999999999998766544333333
No 14
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.23 E-value=0.00024 Score=69.19 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH--HhHHh---------hhcCCCCCcc
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC--GCFGY---------AAFGDLSPGN 166 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v--g~~gY---------~~fG~~~~~~ 166 (337)
....+++++.++|+.|+++|++.+.+++.. ++-+|++..+..+..++|.+. .+.|- ..-|+++.+.
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~---~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKRK---DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCccH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 466799999999999999999999998641 688888888877777787544 22221 1122222221
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHH
Q 019689 167 LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTI 246 (337)
Q Consensus 167 il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~ 246 (337)
+..-....+..+...+..+...+.+..||-=...-.+|.++..++. ++++ ..|...-..
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~~-------------------~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNSH-------------------GGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcc-------------------ccceeeehh
Confidence 1111000112233445556666677777732333355666555432 1110 112223335
Q ss_pred HHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019689 247 FVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKI 291 (337)
Q Consensus 247 ~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~ 291 (337)
..+-..++|...|+ |=..++.-|.. .+.+.-++|+++-+|.||+
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 57788899999998 88899999996 6688889999999998764
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.99 E-value=0.00021 Score=69.55 Aligned_cols=178 Identities=9% Similarity=0.066 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhcCcceehhhh----hhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-----Cccc
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQ----DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PGNL 167 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~----~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-----~~~i 167 (337)
.+...++++..+||.+|..+++.. +|.+||+...+|-+|++..+..+..++|+..-...-...+.+. ++++
T Consensus 186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ni 265 (397)
T TIGR00814 186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNI 265 (397)
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Confidence 467899999999999999999997 3344331112677888888888888888776555444444442 1121
Q ss_pred --ccccCC--CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHH
Q 019689 168 --LTGFGF--YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVW 243 (337)
Q Consensus 168 --l~n~~~--~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~ 243 (337)
+..+.+ +.+ ....+......+.+..||.=...-.++.++..+.+..+. + ++ +. +.+..+...
T Consensus 266 s~Ls~l~~~~~~~-~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~-~--~~--~~--------~~~~~~~~~ 331 (397)
T TIGR00814 266 SILSYLANHFNAA-WISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM-K--GK--KI--------NIRKLNRAI 331 (397)
T ss_pred HHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-c--cc--cc--------CHHHHHHHH
Confidence 110000 112 222233344445556666433344667777766321111 0 00 00 011334455
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHh
Q 019689 244 RTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQ 288 (337)
Q Consensus 244 r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~ 288 (337)
-..+.+.++.+|+.=|+.=++++-+|+-....+.|++|...-.|.
T Consensus 332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 557778888999999999888887788888888899999876654
No 16
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.93 E-value=0.0033 Score=62.55 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 160 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG 160 (337)
+...++....|+|.|-.....+-+|+||+ |+.+|++..+...+.++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 45578888999999988888888999986 899999999999999999998876654443
No 17
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.88 E-value=0.006 Score=60.80 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHh
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC 153 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~ 153 (337)
+.+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|.....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888899999999999999999999995 89999999999999999998754
No 18
>PRK11021 putative transporter; Provisional
Probab=97.88 E-value=0.0053 Score=59.96 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019689 95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF 154 (337)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~ 154 (337)
++.+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|......
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 344677889999999999999999999999995 899999999999999999988654
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=97.87 E-value=0.005 Score=60.63 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 156 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY 156 (337)
+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|+.......
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999995 79999999999999999998765443
No 20
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.86 E-value=0.0029 Score=63.75 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 019689 99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCG 152 (337)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg 152 (337)
....+..+.|+|.|--.....-+|||||+ |+++|++..+..++.++|....
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 33445556899999999999999999995 7999999999988888887644
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=97.85 E-value=0.0029 Score=63.54 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 158 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~ 158 (337)
...+.++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|+.........
T Consensus 220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 220 LPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 3455667789999999999999999999995 7899999998888888888776544433
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.84 E-value=0.0043 Score=61.18 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019689 95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 157 (337)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~ 157 (337)
+..+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|....+....
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~ 244 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISG 244 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777889999999999999999999999995 799999999999999999988765543
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.84 E-value=0.0046 Score=61.10 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 155 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g 155 (337)
....++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|..+.+.-
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999999995 7999999999999999999887653
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=97.83 E-value=0.0053 Score=61.08 Aligned_cols=57 Identities=16% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 155 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g 155 (337)
+.+...++....|+|.|--.....-+|+|||+ |+.+|++..+.....++|.......
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~ 255 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFVI 255 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999999999995 8999999988888888888764443
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.82 E-value=0.0067 Score=60.05 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF 154 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~ 154 (337)
+.+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|....+.
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999995 789999999998889999886554
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.81 E-value=0.0041 Score=61.74 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC 151 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v 151 (337)
+...+++...|+|.|--.....-+|+|||+ |+.+|++..+.....+.|...
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 555778889999999999999999999995 789999988887777777654
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=97.81 E-value=0.0074 Score=59.94 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 155 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g 155 (337)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+.....++|......-
T Consensus 209 ~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 209 NGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999995 7899999999988999998754443
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.78 E-value=0.006 Score=60.75 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 155 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g 155 (337)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|+......
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999995 7899999999988899998886543
No 29
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.74 E-value=0.0093 Score=58.28 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019689 99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 162 (337)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~ 162 (337)
.+.+++...|+|.|-......-+|+|| |+.+|++..+..++.++|......-....+++
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence 568889999999999999999999886 79999999999999999999877665555554
No 30
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.73 E-value=0.0089 Score=58.67 Aligned_cols=177 Identities=11% Similarity=0.092 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCC-C----cc--chhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-----Cc
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSP-P----SE--SKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PG 165 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P-~----~s--~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-----~~ 165 (337)
....++++++|+|+-|+.+|++...+|+. + ++ .+|-+|++..+..+..++|++.-...-..-+++. ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46689999999999999999999884321 0 01 3788888888888888888776554444433331 12
Q ss_pred ccc--c---c-cCCC-CC-----hHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhh-c-CCCCCcccCccccccCCC
Q 019689 166 NLL--T---G-FGFY-NP-----YWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQ-R-FPDSEFITKDIKVPIPGF 231 (337)
Q Consensus 166 ~il--~---n-~~~~-~~-----~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~-~-~~~s~~~~~~~~~~~p~~ 231 (337)
|+. . | ++.. +. .+...++.+...+.+..||.=...-.+|.++.+..+ . .++.+ +.
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~------~~----- 358 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT------KV----- 358 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cc-----
Confidence 221 1 1 2100 00 122333444445566666632223456777766632 1 11111 01
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHh
Q 019689 232 KCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQ 288 (337)
Q Consensus 232 g~~~~~~~~~~~r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~ 288 (337)
+.+..+......+.+.++.+|+.=|++=++++-+|+-....+.|++|...-.|.
T Consensus 359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv 412 (443)
T PRK13629 359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA 412 (443)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence 111344556667788889999999999999998888888888999999876654
No 31
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.68 E-value=0.0087 Score=59.10 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 155 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g 155 (337)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|.......
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888899999999999999999999995 7999999999999999998876543
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.68 E-value=0.01 Score=58.70 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 156 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY 156 (337)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+......+|+.......
T Consensus 201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 3577889999999999999999999999995 79999998888888888887655433
No 33
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.66 E-value=0.02 Score=56.81 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF 154 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~ 154 (337)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+.....++|......
T Consensus 199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999999999999999994 789999888877777888776543
No 34
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.66 E-value=0.0068 Score=60.86 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 156 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY 156 (337)
..+...++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|....+.-.
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788999999999999999999999995 78999999999999999999865443
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.64 E-value=0.019 Score=57.66 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF 154 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~ 154 (337)
+...++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|....+.
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 455667778999999999999999999995 799999999999999999876443
No 36
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.55 E-value=0.024 Score=56.61 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 160 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG 160 (337)
....++....|+|.|-......-+|+|||+ |+.+|++..+..+..+++....+.-+...|
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445566667899999999999999999995 899999999887766655444433333444
No 37
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.55 E-value=0.02 Score=57.03 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 156 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY 156 (337)
.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+.....++|......-+
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 3577889999999999999999999999995 78999998777777778876665444
No 38
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.54 E-value=0.022 Score=56.72 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 156 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY 156 (337)
.....++....|+|.|-......-+|+|| + |+.+|++..+..++.++|........
T Consensus 199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888899999999999999999999 4 99999999999999999998876543
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.52 E-value=0.012 Score=57.90 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHh
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC 153 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~ 153 (337)
.+.+.++....|+|.|.......-+|+|||+ |+.+|++..+..++..+|...-.
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 191 VGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 4667888889999999999999999999995 78999999999888888876644
No 40
>TIGR00909 2A0306 amino acid transporter.
Probab=97.50 E-value=0.024 Score=55.54 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 156 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY 156 (337)
.+...++....|+|.|-.......+|+|||+ |+.+|++..+..++.++|........
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 195 GGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888899999999999999999999994 78999999999999999998875444
No 41
>PRK10836 lysine transporter; Provisional
Probab=97.44 E-value=0.06 Score=53.92 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 158 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~ 158 (337)
..+.+.....|+|.|-......-+|+|||+ |+.+|++..+...+.++|......-...
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 444555667799999999999999999995 8999999999999999999886544333
No 42
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.43 E-value=0.015 Score=59.28 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=70.9
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccc-cccccCchhhHHHHHHHHHHHHHHhcCcce
Q 019689 37 LSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTVSETQKIWRSFQALGDIAFAYSYSII 115 (337)
Q Consensus 37 Ls~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~faf~~~~~ 115 (337)
+...+..|..+++..+..+..+....+.++.+.... .+.+...... ..++..+ ..+.+.+.+.....|+|.|--.
T Consensus 174 ~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~---~~~~~~~~~~~~~~~f~p-~g~~g~l~g~~~~~faf~Gfd~ 249 (557)
T TIGR00906 174 VLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKA---DVANWSITEEKGAGGFMP-YGFTGVLSGAATCFFAFIGFDA 249 (557)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC---CchhccccccccCCCCCC-cchHHHHHHHHHHHHHHhhHHH
Confidence 334567778887777766544433233333332221 1111110000 0000111 1234677889999999999999
Q ss_pred ehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019689 116 LIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 155 (337)
Q Consensus 116 ~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g 155 (337)
....-+|+|||+ |+.+|++..+..+++++|..+.+.-
T Consensus 250 v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 250 IATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999995 7899999999999999999887543
No 43
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.34 E-value=0.17 Score=50.43 Aligned_cols=61 Identities=15% Similarity=-0.050 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 161 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~ 161 (337)
....+.....|+|.|-......-+|+|||+ |+.+|++..+..+..++|..+-+......++
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 344566667899999999999999999995 8999999999988877666555444433343
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.25 E-value=0.05 Score=53.56 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019689 98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 161 (337)
Q Consensus 98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~ 161 (337)
....++....++|.|-......-+|+|||+ |+.+|++..+...+.++|......-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 577888999999999999999999999984 7899999999999999999998877766665
No 45
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.22 E-value=0.029 Score=55.38 Aligned_cols=245 Identities=15% Similarity=0.168 Sum_probs=127.7
Q ss_pred CcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH---HHHHHHHHhhHhhhhcCCCCCC---cccccccccCc
Q 019689 19 CHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFT---YSTIGLGLGIAKVAETGKFRGS---LTGISIGTVSE 92 (337)
Q Consensus 19 c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~---~~~i~v~~~i~~~~~~~~~~~~---~~~~~~~~~~~ 92 (337)
|..+...-..+..+++..+. ..|...++|.+.+-.+.++. ...++++.+++....+...+.. .++.+
T Consensus 128 c~~p~~~~~lla~~~l~~lt-~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~------ 200 (479)
T KOG1287|consen 128 CDVPRVASKLLAAALLVLLT-LINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD------ 200 (479)
T ss_pred CCCchHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc------
Confidence 66665555555554444444 45666677777666554433 2222233333322222111111 12211
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccC
Q 019689 93 TQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFG 172 (337)
Q Consensus 93 ~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~ 172 (337)
.+.-+...++=.-.|||.|=..+-.+-+|+|||. |++++++..++.+++++|+.+=+..+.+- +.+.++.+-.
T Consensus 201 -~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~a 273 (479)
T KOG1287|consen 201 -TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDA 273 (479)
T ss_pred -CchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccch
Confidence 1223566778888999999999999999999995 89999999999999999999866544321 2222222110
Q ss_pred C-----C--CChHHHHHHHHHHHHHHHHhhhhhc----cchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHH
Q 019689 173 F-----Y--NPYWLLDIANAAIVIHLVGAYQVFC----QPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRL 241 (337)
Q Consensus 173 ~-----~--~~~~~~~~~~~~~~i~~~~s~~l~~----~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~ 241 (337)
. + -+.+ .-..-++..+..+++..-.+ +..+...++ ...|+.- ..- +. ++. -.+.
T Consensus 274 Vav~Fa~~~~G~~-~~~ip~~ValS~~G~~n~~ifs~SR~~~~~are---G~LP~~~--s~i-~~-------~~~-TP~~ 338 (479)
T KOG1287|consen 274 VAVTFADRILGVF-AWAIPFSVALSLIGSLNSVIFSSSRLFYAGARE---GHLPAFF--SMI-SV-------RRF-TPRP 338 (479)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc---cCccHHH--Hhh-cC-------CCC-CChH
Confidence 0 0 0111 01112222333333332111 111111111 0112110 000 00 000 1111
Q ss_pred HHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCc
Q 019689 242 VWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKW 294 (337)
Q Consensus 242 ~~r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~ 294 (337)
......+..++...+.+++.+++.++=.......+.+=+++|+|.++++..
T Consensus 339 --allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~ 389 (479)
T KOG1287|consen 339 --ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLP 389 (479)
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 112233334445566689999999988888888888899999998876543
No 46
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.21 E-value=0.051 Score=58.76 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019689 99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF 154 (337)
Q Consensus 99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~ 154 (337)
++..++++.+||.|-.....+-+|+|||+ ++.+|++..+..+++++|+.+.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677878889999888899999999995 899999999999999999999753
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=95.87 E-value=0.41 Score=47.02 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHH-----HHHHHHhHHhhhcCCCCCccc
Q 019689 95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTL-----FYMLCGCFGYAAFGDLSPGNL 167 (337)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~-----iY~~vg~~gY~~fG~~~~~~i 167 (337)
.+.+.+.++-..+|||+|.-.+=.--+|-|||+ |..+|+.+.-..=..+ +.+++.+.-|-.++++.++.+
T Consensus 201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV 275 (462)
T COG1113 201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV 275 (462)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence 445778999999999999888888889999995 6777876654433333 344556666777777665543
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.11 E-value=0.12 Score=51.52 Aligned_cols=64 Identities=27% Similarity=0.201 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 162 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~ 162 (337)
+.+.+.++....++|.|-......-+|.|||+ |+.+|++..+.....++|.......=...|.+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 45788999999999999999999999999995 89999999999999999998776554555544
No 49
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.96 E-value=6.7 Score=39.55 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccc
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTG 170 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n 170 (337)
.|....++-.-.....|--.-..+-+|-||++ ++-+|.+..+..+..++=..+-+.-..+-++|....+..+
T Consensus 251 G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~ 322 (550)
T KOG1289|consen 251 GWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS 322 (550)
T ss_pred hHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence 34555666666666777777789999999985 7888888888877777666655555556675544333333
No 50
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=93.55 E-value=4.6 Score=38.47 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=48.4
Q ss_pred HHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC
Q 019689 104 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 163 (337)
Q Consensus 104 g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~ 163 (337)
....++|.+.....-...++||| |+.+|+...+...+..+|...-+..-..+|.+.
T Consensus 186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 36788998888888888999998 899999999999999999988888888888663
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.98 E-value=2.6 Score=42.93 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHh
Q 019689 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC 153 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~ 153 (337)
+.++..++-+..|+|.|--.+-.--+|-|||+ |.-+++...++..++.+|....+
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~ 285 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSI 285 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999995 89999999999999999998876
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=87.29 E-value=36 Score=34.50 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCCcchhHHHHHHHHHhh--cCCCCchhh-HHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccc-cCchhhH
Q 019689 21 MNSNPYMIAFGIVEIVLS--QIPDFDQLW-WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGT-VSETQKI 96 (337)
Q Consensus 21 ~~~~~~~ii~~~~~~pLs--~~r~l~~ls-~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 96 (337)
++...|..++.++++.+. -.|-+.+.- |+|.+=++.++.+ ++++..+..|.. |.+...-.--|.. -.....+
T Consensus 158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~F--ii~gii~~~Gg~--~~~~~ig~~yw~~pg~F~~gf 233 (541)
T COG0833 158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGF--IILGIIIICGGG--PTHGYIGFNYWHDPGAFAGGF 233 (541)
T ss_pred CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHH--HHHHHHHhcCCC--CCCCCcceeeecCCCCCCcch
Confidence 567789999888777766 456666665 4555555554442 333333333321 2122221112221 1122245
Q ss_pred HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH
Q 019689 97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC 151 (337)
Q Consensus 97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v 151 (337)
.++...+-+..|+|+|.-.+----.|=+||+ |..+|+.....-=..++|...
T Consensus 234 ~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~s 285 (541)
T COG0833 234 KGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILS 285 (541)
T ss_pred HHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999988888889999995 889998887776666666544
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=81.39 E-value=10 Score=35.49 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019689 95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 162 (337)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~ 162 (337)
+..+.+.+.-...+.|++-..+.-+...+|+| ++..|....+...+..+|...-+..-..||.+
T Consensus 173 g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 173 GIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34466667777788888887888888999998 88999999999999988888888788888865
No 54
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=81.31 E-value=55 Score=31.78 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCcceehhhhh-hcCCCCccchhhhhHHHHHHHH---HHHHHHHHHhHHh
Q 019689 101 QALGDIAFAYSYSIILIEIQD-TVKSPPSESKTMKKASLISVGV---TTLFYMLCGCFGY 156 (337)
Q Consensus 101 ~~~g~~~faf~~~~~~~~i~~-~M~~P~~s~~~f~~~l~~s~~~---~~~iY~~vg~~gY 156 (337)
-+++-..|+. ..+-.+.+ |+|||+ |+.++....+.+. ...+|...+.+|-
T Consensus 188 D~laal~fg~---iiv~~i~~~g~~~~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa 241 (378)
T TIGR00796 188 DALAALVFGI---IVVNAIRSRGVTKPK---KITKYTIKAGLIAAVLLAFIYLSLFYLGA 241 (378)
T ss_pred HHHHHHHHHH---HHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443 45556666 999983 5666676666633 3344555544443
No 55
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=76.10 E-value=39 Score=33.18 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhc
Q 019689 240 RLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQK 289 (337)
Q Consensus 240 ~~~~r~~~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~ 289 (337)
|........+.+.+.++..|. +....+..|++.....+-++|.+++++-+
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~ 374 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPR 374 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556667777777774 67788888989999999999999998864
No 56
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=71.89 E-value=1.4e+02 Score=31.75 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=35.9
Q ss_pred HHHHHHHccchHHHHHHhhhhhhhhHHHhH---HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 019689 251 TTVISMLLPFFNDVVGLLGALGFWPLTVYF---PVEMYIAQKKIPKWSTKWLCLQILSVACLIITIA 314 (337)
Q Consensus 251 ~~~iAi~iP~f~~vlsliGa~~~~~l~fi~---P~l~~l~~~~~~~~~~~~~~~~~i~v~~ii~gv~ 314 (337)
.+-+++.+-++|.+-.++.-+. .+||.| -|..+-.++.+.|+.|-+.++|.+..+|..++++
T Consensus 556 Ice~gILigslD~iApilsmFF--LMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~ 620 (1075)
T KOG2082|consen 556 ICECGILIGSLDLIAPILSMFF--LMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLA 620 (1075)
T ss_pred HHHhhheeechhHHHHHHHHHH--HHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHH
Confidence 3445566667777666655444 344433 2333333455666666566778877777766655
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=69.83 E-value=1.2e+02 Score=30.09 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=71.8
Q ss_pred cCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-CcccccccCCCCChHHHHHHHHHHHH
Q 019689 111 SYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-PGNLLTGFGFYNPYWLLDIANAAIVI 189 (337)
Q Consensus 111 ~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-~~~il~n~~~~~~~~~~~~~~~~~~i 189 (337)
..........+-+|+|+| +|.-.....+.......-+.+|...-.+=|++. .......++ . ++..++++
T Consensus 208 sw~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~-----~g~~~~li 277 (442)
T COG1457 208 SWGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---G-----FGLPAILI 277 (442)
T ss_pred hhhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---c-----HHHHHHHH
Confidence 344666888888998822 233334455556666677778888888877776 333333332 1 23333333
Q ss_pred HHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHc----cchHHHH
Q 019689 190 HLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLL----PFFNDVV 265 (337)
Q Consensus 190 ~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~i----P~f~~vl 265 (337)
..+.....+..-++..--..... +++ . + +..+.++.... +.+++|+.. .+++.++
T Consensus 278 l~l~~~ttN~~nlYsa~ls~~~i-~~~---------l--~-------k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl 336 (442)
T COG1457 278 LVLGTVTTNANNLYSAGLSFANI-IPK---------L--S-------KVTRVVIAGVG--IGTLLALAGPFFYNFFENFL 336 (442)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh-hhh---------h--h-------hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33333333332233211111110 110 0 0 13333333222 455555554 5788999
Q ss_pred HHhhhhhhhhHHHhHHHHH
Q 019689 266 GLLGALGFWPLTVYFPVEM 284 (337)
Q Consensus 266 sliGa~~~~~l~fi~P~l~ 284 (337)
.++|+.........+-=.+
T Consensus 337 ~~i~~~i~P~~~I~iad~~ 355 (442)
T COG1457 337 LLLGYFIPPWGGVMIADYF 355 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887555554444333
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=67.90 E-value=1.2e+02 Score=29.32 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=32.2
Q ss_pred ceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019689 114 IILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 162 (337)
Q Consensus 114 ~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~ 162 (337)
...+...+-.|+| +|-......+..+...+-..+|...-.+.|+.
T Consensus 190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3368888888877 66656666777777778888887776666653
No 59
>PRK11375 allantoin permease; Provisional
Probab=66.61 E-value=1.5e+02 Score=29.80 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=16.1
Q ss_pred hHHHHHHhhhhhhhhHHHhHH
Q 019689 261 FNDVVGLLGALGFWPLTVYFP 281 (337)
Q Consensus 261 f~~vlsliGa~~~~~l~fi~P 281 (337)
|.+++++.|++.++....++=
T Consensus 373 f~~FL~~lg~~l~Pi~gImi~ 393 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVMMA 393 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 889999999998776665543
No 60
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=61.62 E-value=1.7e+02 Score=28.80 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=33.3
Q ss_pred cCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh----cCCCC
Q 019689 111 SYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA----FGDLS 163 (337)
Q Consensus 111 ~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~----fG~~~ 163 (337)
+.-.+.+..-+.+|+| ++-.+....++.........+|.++-.. +|+..
T Consensus 222 s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 222 TWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4456789999999987 4444455666666666667777666554 77664
No 61
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=61.20 E-value=24 Score=31.77 Aligned_cols=79 Identities=10% Similarity=0.178 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHccchHHHHHHh---------hhhhhhhHHHhHHHHHHHHhcCCC-----CchhhHHHHHHHHHHHHHH
Q 019689 246 IFVILTTVISMLLPFFNDVVGLL---------GALGFWPLTVYFPVEMYIAQKKIP-----KWSTKWLCLQILSVACLII 311 (337)
Q Consensus 246 ~~v~~~~~iAi~iP~f~~vlsli---------Ga~~~~~l~fi~P~l~~l~~~~~~-----~~~~~~~~~~~i~v~~ii~ 311 (337)
...+.++++|..++.++-++..+ ||.+|-.|+++= |+.+-|.. -.....|..|++.++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 34555677788888887777664 777887777764 44332211 1111234446777788887
Q ss_pred HHHHHH--HHHHHHHHhcc
Q 019689 312 TIAAAA--GSIAGVVTDLK 328 (337)
Q Consensus 312 gv~gt~--~si~~ii~~~~ 328 (337)
.+-+++ ..|+..-+.++
T Consensus 237 ~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHhHHHHhhHHHHHh
Confidence 777765 66666655554
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=59.34 E-value=1.9e+02 Score=28.74 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=21.1
Q ss_pred cCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH---hhhcCC
Q 019689 123 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFG---YAAFGD 161 (337)
Q Consensus 123 M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g---Y~~fG~ 161 (337)
.|++ |+.+|....+......++....+.| +..+.+
T Consensus 263 aks~----~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~ 300 (483)
T PRK09442 263 YKDS----KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD 300 (483)
T ss_pred cCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555 7888887776655555555444444 544544
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=54.70 E-value=78 Score=30.54 Aligned_cols=39 Identities=13% Similarity=0.384 Sum_probs=20.3
Q ss_pred CCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 019689 21 MNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFT 59 (337)
Q Consensus 21 ~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~ 59 (337)
++...-+++.+++.+..+..-=++...+...+=.+..+.
T Consensus 118 i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 118 IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMII 156 (406)
T ss_dssp --HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHH
Confidence 344555566666777777888888888888777654433
No 64
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=46.86 E-value=23 Score=23.29 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCc
Q 019689 133 MKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG 165 (337)
Q Consensus 133 f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~ 165 (337)
|..+...+..+.+++-.+.|.--|.+||+..+.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppSk~ 36 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPSKE 36 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcccc
Confidence 444555666666666666666668888877554
No 65
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=45.90 E-value=1.4e+02 Score=29.46 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019689 238 LFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKI 291 (337)
Q Consensus 238 ~~~~~~r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~ 291 (337)
.+|...|+...+.+.++.+.+-+.+.++.+.+.+.+..+-+..+++..+-.+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 567788876666655555544499999999999999998888888888776665
No 66
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=44.43 E-value=3.3e+02 Score=26.95 Aligned_cols=35 Identities=6% Similarity=0.164 Sum_probs=20.4
Q ss_pred CCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 019689 22 NSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVM 56 (337)
Q Consensus 22 ~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~ 56 (337)
+...-+++.+++.......--++...+...+=.+.
T Consensus 156 ~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v 190 (471)
T TIGR02119 156 SYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIV 190 (471)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33334444555566666777777777766665443
No 67
>CHL00020 psbN photosystem II protein N
Probab=38.62 E-value=26 Score=22.68 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCCCc
Q 019689 137 SLISVGVTTLFYMLCGCFGYAAFGDLSPG 165 (337)
Q Consensus 137 l~~s~~~~~~iY~~vg~~gY~~fG~~~~~ 165 (337)
...+..+..++..+.|.--|.+||+..+.
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGppSk~ 33 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQPSKQ 33 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCchhc
Confidence 34455555555555666667788876543
No 68
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.36 E-value=35 Score=22.14 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCCCc
Q 019689 138 LISVGVTTLFYMLCGCFGYAAFGDLSPG 165 (337)
Q Consensus 138 ~~s~~~~~~iY~~vg~~gY~~fG~~~~~ 165 (337)
..+..+..++-.+.|.-.|.+||...+.
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppSk~ 33 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPSKE 33 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCccc
Confidence 3444555555566666668888876554
No 69
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=34.44 E-value=2.9e+02 Score=26.14 Aligned_cols=85 Identities=6% Similarity=-0.054 Sum_probs=41.8
Q ss_pred HHHHHHHHHccchHHHHHHhhhhhhhh-----HHHhHHHHHHHHhc-------CC-----CCchhhHHHHHHHHHHHHHH
Q 019689 249 ILTTVISMLLPFFNDVVGLLGALGFWP-----LTVYFPVEMYIAQK-------KI-----PKWSTKWLCLQILSVACLII 311 (337)
Q Consensus 249 ~~~~~iAi~iP~f~~vlsliGa~~~~~-----l~fi~P~l~~l~~~-------~~-----~~~~~~~~~~~~i~v~~ii~ 311 (337)
.+...+..++|.+|..++.+-+..... ...+.....|.... ++ +..-...+....+.+.+-+.
T Consensus 227 gil~glln~IPyiG~~i~~ip~~l~~~~~~~~~~al~v~i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~ 306 (344)
T PRK12287 227 GLLAFALNYIPNIGSVLAAIPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLL 306 (344)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHH
Confidence 334455677888888877655443222 12233334444332 11 11101112222334455566
Q ss_pred HHHHHH------HHHHHHHHhccccccC
Q 019689 312 TIAAAA------GSIAGVVTDLKSYKPF 333 (337)
Q Consensus 312 gv~gt~------~si~~ii~~~~~~~~f 333 (337)
|+.|.. +.++.+.+++++.++.
T Consensus 307 G~~G~ilavPl~~iik~~~~~~~~~~~~ 334 (344)
T PRK12287 307 GPVGMLLSVPLTIIVKIALEQTAGGQSI 334 (344)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCCccHH
Confidence 666544 6677778887776554
No 70
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=33.17 E-value=1.5e+02 Score=22.36 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCc
Q 019689 101 QALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG 165 (337)
Q Consensus 101 ~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~ 165 (337)
...|++..+-.|...+.+..++=.+| + .+-+|++.. ...+..+-+++|+++|.+|| ...+
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~--~-~~~wRalSi-i~FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNV--T-DYVWRALSV-TCFIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCC--c-chhHHHHHH-HHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 34455555555555556666665555 2 233344332 22334445678899999999 5443
No 71
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=31.82 E-value=68 Score=22.50 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=17.9
Q ss_pred cCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019689 123 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 158 (337)
Q Consensus 123 M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~ 158 (337)
-++| +.++|.++...+.+ =..++|++||.-
T Consensus 20 ~~KP--d~~Ef~~iak~t~i----G~~i~G~IGf~I 49 (61)
T TIGR00327 20 CKKP--DLEEYLKVAKVTGI----GIIIVGIIGYII 49 (61)
T ss_pred hcCC--CHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3565 66788776554332 235677777753
No 72
>COG4478 Predicted membrane protein [Function unknown]
Probab=31.04 E-value=1.4e+02 Score=26.11 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019689 301 LQILSVACLIITIAAAAGSIAGVV 324 (337)
Q Consensus 301 ~~~i~v~~ii~gv~gt~~si~~ii 324 (337)
..++.++.++.|+.+.........
T Consensus 126 li~l~v~pliIGv~~~ligF~~fF 149 (210)
T COG4478 126 LILLLVLPLIIGVAASLIGFDIFF 149 (210)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHH
Confidence 345677888888886444444433
No 73
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.13 E-value=1.4e+02 Score=21.60 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcccccc
Q 019689 303 ILSVACLIITIAA-AAGSIAGVVTDLKSYKP 332 (337)
Q Consensus 303 ~i~v~~ii~gv~g-t~~si~~ii~~~~~~~~ 332 (337)
++.+++++.|+++ ++.|-+..-...++..|
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5677888888774 45666666666666555
No 74
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=30.03 E-value=76 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=17.7
Q ss_pred hcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019689 122 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 157 (337)
Q Consensus 122 ~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~ 157 (337)
--++| +.+.|.++...+.+ -..++|++||.
T Consensus 23 ~~~KP--d~~Ef~~ia~~~~i----G~~i~G~iGf~ 52 (61)
T PRK09400 23 VARKP--TREEFLLVAKVTGL----GILLIGLIGFI 52 (61)
T ss_pred HhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34565 66788776554332 23566777775
No 75
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=29.32 E-value=1.6e+02 Score=20.02 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCC
Q 019689 131 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP 164 (337)
Q Consensus 131 ~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~ 164 (337)
+.|.-++.-+. +..++|+..|+.-+..+-++++
T Consensus 20 NsF~fViik~v-ismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 20 NSFWFVIIKSV-ISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHhhhccCccc
Confidence 67776655554 7888999999977776666554
No 76
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=28.86 E-value=1.7e+02 Score=24.87 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=35.6
Q ss_pred HhcCcceehhhhhhcCCCCccchhhhhHHHHHHHH-HHHHHHHHHhHHhhhcCCCCCc
Q 019689 109 AYSYSIILIEIQDTVKSPPSESKTMKKASLISVGV-TTLFYMLCGCFGYAAFGDLSPG 165 (337)
Q Consensus 109 af~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~-~~~iY~~vg~~gY~~fG~~~~~ 165 (337)
++-.....++-|+++|+| ++.. =...+.. =+++|...|+-+|+.+-.+..+
T Consensus 23 s~~~~~~~~~wy~~L~kP-----~w~p-p~~~f~~vWtvLy~l~~iSa~lvW~~~~~~ 74 (161)
T COG3476 23 SFFISSRDPNWYNNLKKP-----FWLP-PEWAFPPVWTVLYALIGISAYLVWEKGPGQ 74 (161)
T ss_pred HHHhccccHHHHHhccCC-----CCCC-hHHHhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344566778899999998 3332 2334433 4889999999999998766443
No 77
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=28.49 E-value=1.6e+02 Score=25.74 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=43.7
Q ss_pred HHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCc---------hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019689 263 DVVGLLGALGFWPLTVYFPVEMYIAQKKIPKW---------ST-KWLCLQILSVACLIITIAAAAGSIAGVVTD 326 (337)
Q Consensus 263 ~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~---------~~-~~~~~~~i~v~~ii~gv~gt~~si~~ii~~ 326 (337)
+..=..|++.+.-+-.++|+...+..+|++-. .+ .-....+..+++++.+++..+.|..++.+.
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 34445678888888889999988888765211 11 122345667788888888888888888764
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=28.41 E-value=6.1e+02 Score=25.36 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=10.8
Q ss_pred HHHHHHHhHHhhhcCC
Q 019689 146 LFYMLCGCFGYAAFGD 161 (337)
Q Consensus 146 ~iY~~vg~~gY~~fG~ 161 (337)
..-..+|+.|+..+.+
T Consensus 283 ~~~~~ig~~~~~~~~~ 298 (502)
T PRK15419 283 AGAVAVGFFGIAYFNE 298 (502)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455778888877754
No 79
>PHA03048 IMV membrane protein; Provisional
Probab=25.41 E-value=1.9e+02 Score=21.89 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcc
Q 019689 101 QALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN 166 (337)
Q Consensus 101 ~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~ 166 (337)
...|++..+-.|...+.+..++ +| + ..-+|++.. ...+..+-+++|++-|.+||....++
T Consensus 15 li~GIiLL~~aCIfAfidfsK~--k~--~-~~~wRalsi-i~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKN--KA--T-VTVWRALSG-IAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcC--CC--c-chhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3455555555555555666666 33 2 233344332 22344455788999999999876654
No 80
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=25.27 E-value=3.5e+02 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 019689 303 ILSVACLIITIAAAAGSIAGVVTDL 327 (337)
Q Consensus 303 ~i~v~~ii~gv~gt~~si~~ii~~~ 327 (337)
.+.++++++|.+|.+.+++...+..
T Consensus 282 ~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 282 LLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888888777665
No 81
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=24.84 E-value=5.3e+02 Score=23.42 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=24.1
Q ss_pred hhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019689 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 160 (337)
Q Consensus 121 ~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG 160 (337)
+.+++| ++++.+....++..++|...-..++..++
T Consensus 19 ~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~ 53 (251)
T PRK04949 19 KLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLD 53 (251)
T ss_pred HHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776 88888888888888777766444444444
No 82
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=23.88 E-value=1.1e+02 Score=21.84 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=18.1
Q ss_pred cCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019689 123 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 158 (337)
Q Consensus 123 M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~ 158 (337)
-|+| +.+.|.++...+-+- ..++|.+||.-
T Consensus 25 arKP--~~eEy~~~aKi~~~G----i~liG~IGfiI 54 (65)
T COG2443 25 ARKP--DWEEYSKIAKITGLG----ILLIGIIGFII 54 (65)
T ss_pred HhCC--CHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3565 667887766544322 25677777754
No 83
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=22.64 E-value=4.4e+02 Score=24.70 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019689 302 QILSVACLIITIAAAAGSIAGVVTDL 327 (337)
Q Consensus 302 ~~i~v~~ii~gv~gt~~si~~ii~~~ 327 (337)
.++..+++++|.+|.+.+++.-.+..
T Consensus 281 ~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 281 GLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888888888888877665
No 84
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=21.24 E-value=3.3e+02 Score=22.53 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=5.4
Q ss_pred hHHHHHHHHh
Q 019689 279 YFPVEMYIAQ 288 (337)
Q Consensus 279 i~P~l~~l~~ 288 (337)
++|+++-++.
T Consensus 77 vlP~~~l~~~ 86 (156)
T PF08019_consen 77 VLPALLLWRV 86 (156)
T ss_pred HHHHHHHHHH
Confidence 3566655444
No 85
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=20.98 E-value=8.3e+02 Score=24.27 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHH---HHHHHHHHhHHhhhcCC
Q 019689 131 KTMKKASLISVGVT---TLFYMLCGCFGYAAFGD 161 (337)
Q Consensus 131 ~~f~~~l~~s~~~~---~~iY~~vg~~gY~~fG~ 161 (337)
|+.+|....+.... ......+|+.|...+.+
T Consensus 261 k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 294 (487)
T TIGR02121 261 KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNK 294 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77877766554322 22345566667665544
No 86
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=20.05 E-value=1.8e+02 Score=22.90 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=9.6
Q ss_pred HHHHHHHhccccccCcc
Q 019689 319 SIAGVVTDLKSYKPFST 335 (337)
Q Consensus 319 si~~ii~~~~~~~~f~~ 335 (337)
..+.+++++++.++|++
T Consensus 42 ~~~~ll~~i~~~~~Fs~ 58 (136)
T PF11188_consen 42 QLRRLLRNIQKGKPFSP 58 (136)
T ss_pred HHHHHHHHHHCCCcchH
Confidence 34555556665666654
Done!