Query 019689
Match_columns 337
No_of_seqs 131 out of 1325
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 05:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019689.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019689hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 27.0 26 0.0019 21.6 3.0 30 123-158 15-44 (56)
2 d1v54d_ f.23.1.1 (D:) Mitochon 7.0 2.8E+02 0.02 20.0 4.6 21 119-142 64-84 (144)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 6.5 4.8E+02 0.035 20.5 6.4 42 113-161 96-137 (261)
4 d1jb0l_ f.31.1.1 (L:) Photosys 6.5 4.4E+02 0.032 18.9 6.3 25 100-124 123-147 (151)
5 d1q90b_ f.21.1.2 (B:) Cytochro 6.1 5.3E+02 0.039 19.5 6.3 40 112-158 96-135 (212)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 5.4 1.9E+02 0.014 19.6 2.9 18 246-263 9-26 (158)
7 d1ppjc2 f.21.1.2 (C:15-260) Mi 4.7 4.3E+02 0.031 20.5 5.0 39 112-159 82-120 (246)
8 d1d4ua2 g.39.1.5 (A:1-36) DNA 4.6 91 0.0066 17.0 0.3 8 330-337 12-19 (36)
9 d1nuba2 g.3.11.3 (A:53-77) Dom 4.4 72 0.0052 15.8 -0.3 15 8-22 2-17 (26)
10 d1ciya3 f.1.3.1 (A:33-255) del 4.3 2.8E+02 0.02 21.2 3.3 28 246-273 7-34 (223)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.98 E-value=26 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=16.6
Q ss_pred cCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019689 123 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 158 (337)
Q Consensus 123 M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~ 158 (337)
-++| +.+.|.+....+-+ =.+++|.+||..
T Consensus 15 ~~KP--~~~Ef~~ia~v~~i----G~~i~G~IGf~I 44 (56)
T d1rh5b_ 15 LKKP--TKDEYLAVAKVTAL----GISLLGIIGYII 44 (56)
T ss_dssp EECC--CHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hcCC--CHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3555 67888776443321 235566666653
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.05 E-value=2.8e+02 Score=19.95 Aligned_cols=21 Identities=5% Similarity=-0.119 Sum_probs=13.5
Q ss_pred hhhhcCCCCccchhhhhHHHHHHH
Q 019689 119 IQDTVKSPPSESKTMKKASLISVG 142 (337)
Q Consensus 119 i~~~M~~P~~s~~~f~~~l~~s~~ 142 (337)
-..||+.|+ .++++++..++.
T Consensus 64 t~ae~~~p~---gewK~v~g~~~~ 84 (144)
T d1v54d_ 64 SFAEMNRST---NEWKTVVGAAMF 84 (144)
T ss_dssp CHHHHTCCC---SHHHHHHHHHHH
T ss_pred ccccccCCC---CchhHHHHHHHH
Confidence 467888883 567766655443
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.53 E-value=4.8e+02 Score=20.45 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=23.1
Q ss_pred cceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019689 113 SIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 161 (337)
Q Consensus 113 ~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~ 161 (337)
|..=-=.+++=|+| +... +.+-.....+-+..|..||.-=.|
T Consensus 96 H~~r~~~~gsy~~p----re~~---W~~Gv~l~~l~~~~af~GY~Lpw~ 137 (261)
T d3cx5c2 96 HMAKGLYYGSYRSP----RVTL---WNVGVIIFILTIATAFLGYCCVYG 137 (261)
T ss_dssp HHHHHHHHTTTSTT----CHHH---HHHHHHHHHHHHHHHHHHHHHHCB
T ss_pred HHHHHHHhccccCc----cchh---HHhhHHHHHHHHHHHHhhhhcCCC
Confidence 43333445555666 4432 333335556667888899975433
No 4
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=6.47 E-value=4.4e+02 Score=18.90 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCcceehhhhhhcC
Q 019689 100 FQALGDIAFAYSYSIILIEIQDTVK 124 (337)
Q Consensus 100 ~~~~g~~~faf~~~~~~~~i~~~M~ 124 (337)
+.++|-..|||-.-.++.-+..-|+
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHHH
Confidence 3788999999987777666666554
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.12 E-value=5.3e+02 Score=19.50 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=22.3
Q ss_pred CcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019689 112 YSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 158 (337)
Q Consensus 112 ~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~ 158 (337)
.|..=-=.+++=|+| +++. ...-.....+-+..|..||.-
T Consensus 96 lHm~r~~~~gsyk~p----re~~---W~~Gv~l~~l~m~~aftGY~L 135 (212)
T d1q90b_ 96 LHVFRVYLTGGFKRP----RELT---WVTGVIMAVCTVSFGVTGYSL 135 (212)
T ss_dssp HHHHHHHTTTTTSSS----CHHH---HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcccCc----ccce---ehHhHHHHHHHHHHHHhhhhc
Confidence 344333344555776 4443 333334456667888899964
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.43 E-value=1.9e+02 Score=19.65 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHccchHH
Q 019689 246 IFVILTTVISMLLPFFND 263 (337)
Q Consensus 246 ~~v~~~~~iAi~iP~f~~ 263 (337)
.+.++..+.|+++|.+..
T Consensus 9 ViaIIgILaaia~P~~~~ 26 (158)
T d2pila_ 9 VIAIVGILAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566677776654
No 7
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.75 E-value=4.3e+02 Score=20.50 Aligned_cols=39 Identities=18% Similarity=0.036 Sum_probs=22.7
Q ss_pred CcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhc
Q 019689 112 YSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAF 159 (337)
Q Consensus 112 ~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~f 159 (337)
.|..=-=.+++-|+| +.+ ..+. +...+-+..|..||.-=
T Consensus 82 lHm~r~~~~~sy~~~----~~w----~~G~-~l~~l~m~~af~GY~Lp 120 (246)
T d1ppjc2 82 MHVGRGLYYGSYTFL----ETW----NIGV-ILLLTVMATAFMGYVLP 120 (246)
T ss_dssp HHHHHHHHHTGGGSH----HHH----HHHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCccch----HHH----HHHH-HHHHHHHHHHHeeccCC
Confidence 454444456677776 432 3333 44556677888999753
No 8
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=91 Score=16.97 Aligned_cols=8 Identities=50% Similarity=0.596 Sum_probs=5.4
Q ss_pred cccCccCC
Q 019689 330 YKPFSTSY 337 (337)
Q Consensus 330 ~~~f~~~~ 337 (337)
.++|+|||
T Consensus 12 g~~F~DSY 19 (36)
T d1d4ua2 12 GKEFMDSY 19 (36)
T ss_dssp CCEESCSS
T ss_pred CcHHHHHH
Confidence 46677776
No 9
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.36 E-value=72 Score=15.79 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=9.0
Q ss_pred ccc-ccCCCCCCCcCC
Q 019689 8 NCF-HSKGDKNPCHMN 22 (337)
Q Consensus 8 ~~~-~~~~~~~~c~~~ 22 (337)
-|+ |+++-+-.|+++
T Consensus 2 pclnhhck~gkvcevd 17 (26)
T d1nuba2 2 PCQNHHCKHGKVCELD 17 (26)
T ss_dssp TTTTCCCCTTEEEEEC
T ss_pred cccccccccCcEeeeC
Confidence 366 666655667644
No 10
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.26 E-value=2.8e+02 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHccchHHHHHHhhhhhh
Q 019689 246 IFVILTTVISMLLPFFNDVVGLLGALGF 273 (337)
Q Consensus 246 ~~v~~~~~iAi~iP~f~~vlsliGa~~~ 273 (337)
.+-++.++++.++|..|.+++++|-+-.
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~lwp 34 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDIIWG 34 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHcC
Confidence 4456778888889999999887766643
Done!