Query 019690
Match_columns 337
No_of_seqs 32 out of 34
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 03:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06764 hypothetical protein; 76.1 3 6.6E-05 35.5 3.3 65 153-219 24-97 (105)
2 PF09292 Neil1-DNA_bind: Endon 39.4 13 0.00028 27.2 0.6 14 10-23 7-20 (39)
3 COG1465 Predicted alternative 33.5 78 0.0017 32.3 5.1 74 154-235 256-341 (376)
4 PF01959 DHQS: 3-dehydroquinat 33.4 86 0.0019 31.9 5.4 64 164-234 246-318 (354)
5 PF08669 GCV_T_C: Glycine clea 30.4 63 0.0014 25.0 3.2 31 192-223 64-94 (95)
6 COG1254 AcyP Acylphosphatases 26.6 30 0.00066 28.5 0.9 36 206-245 26-61 (92)
7 smart00683 DM16 Repeats in sea 26.3 40 0.00086 25.9 1.4 20 181-200 8-27 (55)
8 PRK02290 3-dehydroquinate synt 24.3 1.4E+02 0.003 30.4 5.1 64 164-234 236-308 (344)
9 PRK11857 dihydrolipoamide acet 19.6 81 0.0018 30.7 2.4 60 184-257 216-282 (306)
10 COG3479 Phenolic acid decarbox 19.6 1.4E+02 0.003 27.7 3.6 68 181-254 32-119 (175)
No 1
>PRK06764 hypothetical protein; Provisional
Probab=76.14 E-value=3 Score=35.45 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=44.6
Q ss_pred hccCCCCcccceeeccccccceeeeec------cCCccc-cCCCccccc--eEEecCCCCCCcceeEeecceeeee
Q 019690 153 SMLNVSTSTLPLVMSEKLQRTKALVEC------EGESVD-LSGDMGAVG--RILVPGTAEGNHEMFLDLKGTIYKT 219 (337)
Q Consensus 153 ~~~~vs~~~lPLvlp~kv~rtK~LvE~------eG~slD-LsGD~GAVG--Rl~V~~~~~~~~~L~LDLKG~iY~a 219 (337)
-+|+||+...|-+--+++|.-.+.+-. -|.+|| ||||.-||- ...+.=... ...++-..|+||+-
T Consensus 24 lepsvs~ae~~q~~~enfn~i~v~mn~~e~y~lsgrsidilsgdkeaiqlnkyti~f~kp--g~yvirvngciy~d 97 (105)
T PRK06764 24 LEPSVSAAESQQVKEENFNAIDVSMNINELYVLSGRSIDVLSGDKEAIQLNKYTIRFSKP--GKYVIRVNGCIYND 97 (105)
T ss_pred eccccchhcchhhhhcccceEEEEEeccceEEEcCceeeeecCChhheEeeeeEEEecCC--ccEEEEEccEEeee
Confidence 368888888898888888855554443 378999 799999974 223322111 35667788999974
No 2
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=39.39 E-value=13 Score=27.24 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=8.7
Q ss_pred cchhccccCcccee
Q 019690 10 DWLRSFQAPTHSVL 23 (337)
Q Consensus 10 dwlr~fq~pt~s~~ 23 (337)
.||+||++|.-+.|
T Consensus 7 ~WLqCY~v~gM~sl 20 (39)
T PF09292_consen 7 AWLQCYSVPGMKSL 20 (39)
T ss_dssp HH-SSTT-TT-EEE
T ss_pred HHHHHhcccccccc
Confidence 59999999985544
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=33.49 E-value=78 Score=32.30 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=48.3
Q ss_pred ccCCCCcccc--eeeccccccceeeeecc-CC---ccccCCC--ccccceEEecCCCCCCcceeE---eecceeeeeeee
Q 019690 154 MLNVSTSTLP--LVMSEKLQRTKALVECE-GE---SVDLSGD--MGAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLV 222 (337)
Q Consensus 154 ~~~vs~~~lP--Lvlp~kv~rtK~LvE~e-G~---slDLsGD--~GAVGRl~V~~~~~~~~~L~L---DLKG~iY~atIV 222 (337)
-++|.+|.+- |.+|- ++|+.|.||. |+ -+|+.|- .+.|||+-|+. +.|.| -..|..-. +|+
T Consensus 256 PFRVNAG~VhaYi~vPg--~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIEr-----RPl~lIeAey~g~~i~-tiL 327 (376)
T COG1465 256 PFRVNAGAVHAYIRVPG--GKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIER-----RPLMLIEAEYEGVEIS-TIL 327 (376)
T ss_pred ceeecccceeEEEEcCC--CceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeec-----CceEEEEEEecCcEEE-EEe
Confidence 3456555443 33444 6999999999 54 6788886 47899999996 66766 44455443 344
Q ss_pred cCc-cEEEEeecCC
Q 019690 223 PSR-TFCIVSFGHS 235 (337)
Q Consensus 223 Ps~-T~~VVsvg~t 235 (337)
--+ |+-+|+-..+
T Consensus 328 QNAETIkLv~~dG~ 341 (376)
T COG1465 328 QNAETIKLVNPDGE 341 (376)
T ss_pred ccceeEEEEcCCCc
Confidence 444 7777665544
No 4
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.40 E-value=86 Score=31.90 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=46.1
Q ss_pred eeeccccccceeeeecc-CC---ccccCCC--ccccceEEecCCCCCCcceeE---eecceeeeeeeecCccEEEEeecC
Q 019690 164 LVMSEKLQRTKALVECE-GE---SVDLSGD--MGAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLVPSRTFCIVSFGH 234 (337)
Q Consensus 164 Lvlp~kv~rtK~LvE~e-G~---slDLsGD--~GAVGRl~V~~~~~~~~~L~L---DLKG~iY~atIVPs~T~~VVsvg~ 234 (337)
+.+|. +||+.|-||. |+ .+|-.|. ...|||+-|+. ++|.| .--|..++.-+-=.-|+++|+-+.
T Consensus 246 v~~pg--~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~-----RPLllIeA~~~g~~~svilQnaetIRlv~p~G 318 (354)
T PF01959_consen 246 VLMPG--GKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIER-----RPLLLIEAEADGKRISVILQNAETIRLVGPDG 318 (354)
T ss_pred EEcCC--CceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEee-----cceEEEEEEeCCeEEEEEEecCcEEEEECCCC
Confidence 44555 6999999999 44 7888888 46799999996 77766 556766655444445888886443
No 5
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=30.44 E-value=63 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.8
Q ss_pred ccceEEecCCCCCCcceeEeecceeeeeeeec
Q 019690 192 AVGRILVPGTAEGNHEMFLDLKGTIYKTTLVP 223 (337)
Q Consensus 192 AVGRl~V~~~~~~~~~L~LDLKG~iY~atIVP 223 (337)
|+|.|-...... +..|.+++.|..|.|+|++
T Consensus 64 ala~v~~~~~~~-g~~l~v~~~g~~~~a~v~~ 94 (95)
T PF08669_consen 64 ALAYVDREYAEP-GTELEVEIRGKRVPATVVK 94 (95)
T ss_dssp EEEEEEGGGGST-TSEEEEEETTEEEEEEEE-
T ss_pred EEEEECHHHcCC-CCEEEEEECCEEEEEEEeC
Confidence 345554333223 3689999999999999986
No 6
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=26.64 E-value=30 Score=28.51 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=29.8
Q ss_pred cceeEeecceeeeeeeecCccEEEEeecCCchhhhheecc
Q 019690 206 HEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND 245 (337)
Q Consensus 206 ~~L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEai~nd 245 (337)
.++.|+|+|.++| +|-+++=||..|.+++ |+.+.+.
T Consensus 26 ~A~~lgl~G~V~N---~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 26 EALRLGLTGWVKN---LDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred HHHHCCCEEEEEE---CCCCeEEEEEEcCHHH-HHHHHHH
Confidence 5788999999887 6778999999999999 7765543
No 7
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=26.27 E-value=40 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.4
Q ss_pred CCccccCCCccccceEEecC
Q 019690 181 GESVDLSGDMGAVGRILVPG 200 (337)
Q Consensus 181 G~slDLsGD~GAVGRl~V~~ 200 (337)
.+--|++||.|-.|+|+|.+
T Consensus 8 ~~Ved~kgn~G~~G~l~VTN 27 (55)
T smart00683 8 NGVEDTKGNNGDLGVFFVTN 27 (55)
T ss_pred cCeEecCCCCCCeeEEEEEe
Confidence 45679999999999999976
No 8
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=24.35 E-value=1.4e+02 Score=30.35 Aligned_cols=64 Identities=25% Similarity=0.416 Sum_probs=44.8
Q ss_pred eeeccccccceeeeecc-CC---ccccCCCc--cccceEEecCCCCCCcceeE---eecceeeeeeeecCccEEEEeecC
Q 019690 164 LVMSEKLQRTKALVECE-GE---SVDLSGDM--GAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLVPSRTFCIVSFGH 234 (337)
Q Consensus 164 Lvlp~kv~rtK~LvE~e-G~---slDLsGD~--GAVGRl~V~~~~~~~~~L~L---DLKG~iY~atIVPs~T~~VVsvg~ 234 (337)
+.+|. +||+.|-||. |+ .+|-.|.+ ..|||+-|+. ++|.| .--|..++.-+-=.-|+++|+-++
T Consensus 236 v~~pg--g~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~-----RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG 308 (344)
T PRK02290 236 VRVPG--DKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEK-----RPLLLIEAEYGGKRIRTILQNAETIRLVTPDG 308 (344)
T ss_pred EEcCC--CcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEee-----ccEEEEEEEeCCeEEEEEEecCcEEEEECCCC
Confidence 34444 6999999999 43 78999986 5799999996 77776 345766655443334888886543
No 9
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=19.63 E-value=81 Score=30.71 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=41.7
Q ss_pred cccCCCccccceEEecCCCCCCcceeEeecceeeeeeeecCccEEEEeecCCchhhhheecc-------ceeeccCchhh
Q 019690 184 VDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND-------FIQLKPQSNVY 256 (337)
Q Consensus 184 lDLsGD~GAVGRl~V~~~~~~~~~L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEai~nd-------FiqLr~~~n~~ 256 (337)
-||+| |-|.|.+ -|+. |..|-+-|++-+-.|++.+|.-+-+....-.+ .+-|.+++++.
T Consensus 216 ~dl~g-----gTfTISN-----lG~~----G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRvi 281 (306)
T PRK11857 216 DEMKG-----GSFTITN-----YGSV----GSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWI 281 (306)
T ss_pred hhcCC-----ccEEEeC-----CCCC----CccceecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhh
Confidence 45666 7788875 4443 88888889999999999999987665432122 24566777754
Q ss_pred h
Q 019690 257 E 257 (337)
Q Consensus 257 e 257 (337)
+
T Consensus 282 D 282 (306)
T PRK11857 282 D 282 (306)
T ss_pred C
Confidence 4
No 10
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=19.60 E-value=1.4e+02 Score=27.66 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=51.4
Q ss_pred CCccccCCCcccc-ceEEecCCCCCCcceeE-eecceeee-eeeecCccEEEEeecCCch-----------------hhh
Q 019690 181 GESVDLSGDMGAV-GRILVPGTAEGNHEMFL-DLKGTIYK-TTLVPSRTFCIVSFGHSEA-----------------KIE 240 (337)
Q Consensus 181 G~slDLsGD~GAV-GRl~V~~~~~~~~~L~L-DLKG~iY~-atIVPs~T~~VVsvg~tEA-----------------KVE 240 (337)
.+.||.-=-+|.| |||+-. ++|.+ -|---||+ ++.-|.+|-+-+.++++|- ++.
T Consensus 32 dhTIDYRiHsGmVaGRWVkD------QeV~iv~ltegiYkvsWtEPTGTdVaL~f~pne~~~HG~IfFPkWv~ehPEitv 105 (175)
T COG3479 32 DHTIDYRIHSGMVAGRWVKD------QEVHIVRLTEGIYKVSWTEPTGTDVALTFNPNEYVVHGAIFFPKWVVEHPEITV 105 (175)
T ss_pred CceEEEEEecceeeeeeeec------ceEEEEEeeeeEEEEEeeCCCCceEEEEeccccceEEEEEeechhhhcCCcEEE
Confidence 4678877677766 788764 77766 55556787 5677999999999999986 456
Q ss_pred heeccceeeccCch
Q 019690 241 AIMNDFIQLKPQSN 254 (337)
Q Consensus 241 ai~ndFiqLr~~~n 254 (337)
|-+||||.|-..++
T Consensus 106 CyQNDhidLM~esR 119 (175)
T COG3479 106 CYQNDHIDLMEESR 119 (175)
T ss_pred EeecCchhHHHHhH
Confidence 88899998876665
Done!