Query 019690
Match_columns 337
No_of_seqs 32 out of 34
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc7_A Hypothetical protein TM 29.1 19 0.00063 31.2 1.3 44 184-240 15-63 (138)
2 2lnv_A General secretion pathw 20.3 49 0.0017 26.9 2.1 47 206-254 22-81 (104)
3 3oss_C Type 2 secretion system 17.3 67 0.0023 24.3 2.1 44 206-254 5-61 (68)
4 2ka5_A Putative anti-sigma fac 12.6 51 0.0017 25.4 0.4 46 171-218 19-65 (125)
5 2lc4_A PILP protein; type IV p 10.1 2.1E+02 0.0073 23.4 3.3 34 219-252 45-82 (111)
6 2f1f_A Acetolactate synthase i 8.4 87 0.003 26.7 0.3 30 215-244 107-137 (164)
7 2y4x_A PILP protein; biosynthe 8.1 3E+02 0.01 21.6 3.3 34 219-252 38-75 (93)
8 2pc6_A Probable acetolactate s 8.0 88 0.003 26.8 0.2 30 215-244 108-138 (165)
9 2fgc_A Acetolactate synthase, 7.6 1E+02 0.0034 27.4 0.3 31 215-245 134-165 (193)
10 3e5z_A Putative gluconolactona 7.3 5.8E+02 0.02 20.6 4.8 45 183-232 197-244 (296)
No 1
>1nc7_A Hypothetical protein TM1070; structural genomics, molecular propeller, PSI, protein structure initiative; 1.55A {Thermotoga maritima} SCOP: b.123.1.1
Probab=29.13 E-value=19 Score=31.23 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=25.2
Q ss_pred cccCCCccccc--eEEecCC--CCCCcceeEeecceeeeeeeecCc-cEEEEeecCCchhhh
Q 019690 184 VDLSGDMGAVG--RILVPGT--AEGNHEMFLDLKGTIYKTTLVPSR-TFCIVSFGHSEAKIE 240 (337)
Q Consensus 184 lDLsGD~GAVG--Rl~V~~~--~~~~~~L~LDLKG~iY~atIVPs~-T~~VVsvg~tEAKVE 240 (337)
-+|-|.|-.+| ||+|.++ |....+- +.|- ++||+|.|-..|+|+
T Consensus 15 ~~l~~~~~~iG~r~W~IpdGyIP~~s~G~-------------~~SHEslCILN~gd~dA~i~ 63 (138)
T 1nc7_A 15 ENLYFQGHMNGARKWFFPDGYIPNGKRGY-------------LVSHESLCIMNTGDETAKIR 63 (138)
T ss_dssp -------CCCSEEEEEEEEECCCCCEETT-------------EECEEEEEEEECSSSCEEEE
T ss_pred hhhcccccccccEEEEecCcccCCCCCCC-------------cccceeEEEeecCCCCcEEE
Confidence 46777888888 5777653 2221111 4554 899999999999986
No 2
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=20.26 E-value=49 Score=26.91 Aligned_cols=47 Identities=30% Similarity=0.306 Sum_probs=35.3
Q ss_pred cceeEeecceeeeeeeecCccEEEEeec-------------CCchhhhheeccceeeccCch
Q 019690 206 HEMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HSEAKIEAIMNDFIQLKPQSN 254 (337)
Q Consensus 206 ~~L~LDLKG~iY~atIVPs~T~~VVsvg-------------~tEAKVEai~ndFiqLr~~~n 254 (337)
..|.|-|.|++|.. -|...++|+..+ .+.|+|..|+.|.|-|+.++.
T Consensus 22 T~L~L~L~GVv~s~--~~~~S~AII~~~g~Q~~Y~vGd~I~g~~a~L~~I~~DrVII~~~Gr 81 (104)
T 2lnv_A 22 STLNLSLTGVMAGD--DDSRSIAIISKDNEQFSRGVNEEVPGYNAKIVSIRPDRVVLQYQGR 81 (104)
T ss_dssp SCCCSEEEEEECCS--SSSSCEEEEESSSCCEEECTTEECSSSCCEEEEEETTEEEEEETTE
T ss_pred CCcceEEEEEEecC--CccccEEEEEcCCeEeEEeCCCCcCCCCEEEEEEeCCEEEEecCCE
Confidence 46888999998853 344555555544 236899999999999999886
No 3
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=17.27 E-value=67 Score=24.27 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=32.9
Q ss_pred cceeEeecceeeeeeeecCccEEEEeec-------------CCchhhhheeccceeeccCch
Q 019690 206 HEMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HSEAKIEAIMNDFIQLKPQSN 254 (337)
Q Consensus 206 ~~L~LDLKG~iY~atIVPs~T~~VVsvg-------------~tEAKVEai~ndFiqLr~~~n 254 (337)
..|.|-|.|+++.. ..++|+.-+ .+.|+|..|+.|-|-|+.++.
T Consensus 5 T~L~l~L~Gvv~s~-----~s~AII~~~g~q~~Y~vGd~i~g~~a~l~~V~~DrVIl~~~G~ 61 (68)
T 3oss_C 5 TRLNVVLRGIAFGA-----RPGAVIEEGGKQQVYLQGERLDSHNAVIEEINRDHVMLRYQGK 61 (68)
T ss_dssp CCSSCEEEEEEESS-----SCEEEEEETTEEEEECTTCBCSSSSEEEEEECSSEEEEEETTE
T ss_pred ccceeEEEEEEeCC-----CcEEEEecCCcEeEEECCCEeCCCCEEEEEEeCCEEEEecCCE
Confidence 35778899997633 556666544 246899999999999999886
No 4
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=12.65 E-value=51 Score=25.37 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=25.4
Q ss_pred ccceeeeeccCCccccCCCccccceEEec-CCCCCCcceeEeecceeee
Q 019690 171 QRTKALVECEGESVDLSGDMGAVGRILVP-GTAEGNHEMFLDLKGTIYK 218 (337)
Q Consensus 171 ~rtK~LvE~eG~slDLsGD~GAVGRl~V~-~~~~~~~~L~LDLKG~iY~ 218 (337)
...-++|.+.|+ ||+.. ...+-+.+.. --..+...|+|||.++-|-
T Consensus 19 ~~~~~vv~l~G~-Ld~~~-a~~l~~~l~~~~~~~~~~~vvlDls~V~~i 65 (125)
T 2ka5_A 19 VDDVVILMPNKE-LNIEN-AHLFKKWVFDEFLNKGYNKIFLVLSDVESI 65 (125)
T ss_dssp CSSCEEECCCSC-CSGGG-THHHHHHHHHHTTTTTCCEEEEECTTCSCC
T ss_pred eCCEEEEEEecE-Eeccc-HHHHHHHHHHHHhhCCCCEEEEECCCCCEE
Confidence 344566677664 55543 2233333222 1122346799999999874
No 5
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=10.14 E-value=2.1e+02 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred eeeecCccEEEEe----ecCCchhhhheeccceeeccC
Q 019690 219 TTLVPSRTFCIVS----FGHSEAKIEAIMNDFIQLKPQ 252 (337)
Q Consensus 219 atIVPs~T~~VVs----vg~tEAKVEai~ndFiqLr~~ 252 (337)
|=|.|.+.+..|. +|++.-||..|..+.|.|++.
T Consensus 45 ALV~~dG~vyrVk~G~ylG~n~GrI~~It~~~I~l~E~ 82 (111)
T 2lc4_A 45 ALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEI 82 (111)
T ss_dssp EEEEETTEEEEEETTCEETTTTEEEEEECSSEEEEEEE
T ss_pred EEEEeCCcEEEEccCCEeccCCCEEEEEeCCeEEEEEE
Confidence 3344555555565 567788999999999999875
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=8.41 E-value=87 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=26.2
Q ss_pred eeeeeeeecCc-cEEEEeecCCchhhhheec
Q 019690 215 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMN 244 (337)
Q Consensus 215 ~iY~atIVPs~-T~~VVsvg~tEAKVEai~n 244 (337)
-+|+|+||=-. ..+++-+.+++.||+++.+
T Consensus 107 ~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~ 137 (164)
T 2f1f_A 107 EIFRGQIIDVTPSLYTVQLAGTSGKLDAFLA 137 (164)
T ss_dssp HHTTCEEEEECSSEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCEEEEEEeCCHHHHHHHHH
Confidence 47999999986 7999999999999998765
No 7
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=8.14 E-value=3e+02 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.9
Q ss_pred eeeecCccEEEEe----ecCCchhhhheeccceeeccC
Q 019690 219 TTLVPSRTFCIVS----FGHSEAKIEAIMNDFIQLKPQ 252 (337)
Q Consensus 219 atIVPs~T~~VVs----vg~tEAKVEai~ndFiqLr~~ 252 (337)
|=|.|.+.+..|. +|++.-||..|..+.|.|++.
T Consensus 38 ALV~~dg~v~~V~~G~yiG~n~G~I~~I~~~~I~l~E~ 75 (93)
T 2y4x_A 38 ALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEI 75 (93)
T ss_dssp EEEEETTEEEEECTTCEETTTTEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCEEEEccCCEeccCCCEEEEEeCCeEEEEEE
Confidence 3344555555665 467788999999999999874
No 8
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=7.99 E-value=88 Score=26.79 Aligned_cols=30 Identities=7% Similarity=0.396 Sum_probs=26.3
Q ss_pred eeeeeeeecCc-cEEEEeecCCchhhhheec
Q 019690 215 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMN 244 (337)
Q Consensus 215 ~iY~atIVPs~-T~~VVsvg~tEAKVEai~n 244 (337)
-+|+|+||=-. ..+++-+.++..||+++.+
T Consensus 108 ~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~ 138 (165)
T 2pc6_A 108 DIFRGNIIDVTNELYTIELTGTRSKLDGFLQ 138 (165)
T ss_dssp HHTTCEEEEEETTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEEcCCEEEEEEcCCHHHHHHHHH
Confidence 47999999985 7999999999999998765
No 9
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=7.55 E-value=1e+02 Score=27.45 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.8
Q ss_pred eeeeeeeecCc-cEEEEeecCCchhhhheecc
Q 019690 215 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMND 245 (337)
Q Consensus 215 ~iY~atIVPs~-T~~VVsvg~tEAKVEai~nd 245 (337)
-+|+|+||=-. ..++|-+..+..||+++.+-
T Consensus 134 ~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~ 165 (193)
T 2fgc_A 134 EIFRGKIIDVSREGAIIEITGARSKVEAFINL 165 (193)
T ss_dssp HHTTCEEEEECSSEEEEEEEECHHHHHHHHHH
T ss_pred HHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHH
Confidence 57999999986 79999999999999987653
No 10
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=7.26 E-value=5.8e+02 Score=20.64 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=27.8
Q ss_pred ccccCCCcccc---ceEEecCCCCCCcceeEeecceeeeeeeecCccEEEEee
Q 019690 183 SVDLSGDMGAV---GRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSF 232 (337)
Q Consensus 183 slDLsGD~GAV---GRl~V~~~~~~~~~L~LDLKG~iY~atIVPs~T~~VVsv 232 (337)
.+|+.+ .|.+ .++. ......-.+|.+|=.|.+|-++ ...+.+++.
T Consensus 197 ~~~~~~-~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~ 244 (296)
T 3e5z_A 197 RYCLNA-RGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA---GDGVHVLTP 244 (296)
T ss_dssp EEEECS-SSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE---TTEEEEECT
T ss_pred EEEECC-CCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc---CCeEEEECC
Confidence 456653 2555 3444 3223333579999999999988 556666654
Done!