Your job contains 1 sequence.
>019691
MAVAENAGAKIDSSNQNLDDTVVSSDSNDVQNSNDHSKERSGNGNANIQIQNGQTKPGAG
AGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNP
AFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT
VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGT
MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC
GEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACFL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019691
(337 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 876 1.1e-87 1
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 871 3.7e-87 1
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 845 2.1e-84 1
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 754 9.3e-75 1
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 738 4.6e-73 1
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 632 6.8e-67 2
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 153 2.9e-08 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 153 2.9e-08 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 153 2.9e-08 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 153 3.1e-08 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 153 3.1e-08 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 153 3.2e-08 1
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 153 4.3e-08 1
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 145 3.3e-07 1
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 141 6.5e-07 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 139 1.6e-06 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 119 2.6e-06 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 133 5.2e-06 2
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 121 1.6e-05 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 118 2.7e-05 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 114 3.1e-05 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 122 4.3e-05 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 124 4.4e-05 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 114 5.5e-05 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 120 7.0e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 100 8.3e-05 1
GENEDB_PFALCIPARUM|PFF0300w - symbol:PFF0300w "RNA-bindin... 123 8.6e-05 2
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 123 0.00011 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 125 0.00012 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 98 0.00014 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 123 0.00014 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 97 0.00018 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 119 0.00020 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 116 0.00020 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 120 0.00022 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 104 0.00023 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 120 0.00026 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00028 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 119 0.00031 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 117 0.00032 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 111 0.00034 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 111 0.00034 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 114 0.00035 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00036 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 114 0.00036 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00036 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 114 0.00036 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 119 0.00038 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 113 0.00043 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 93 0.00048 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 112 0.00057 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 109 0.00058 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 111 0.00073 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 111 0.00074 1
ASPGD|ASPL0000008076 - symbol:AN6004 species:162425 "Emer... 110 0.00078 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 91 0.00080 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 113 0.00085 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 110 0.00092 1
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 177/258 (68%), Positives = 200/258 (77%)
Query: 80 GESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTD 139
GESFK +MR+L ++ SKLNPMA EFVPPSL + NN T
Sbjct: 76 GESFKR-DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTG 134
Query: 140 --GTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLAT 197
G N NG RRK++ + QGKRRMN RTS AQ+++VIRRTVYVSD+DQQVTEEQLA
Sbjct: 135 NGGYGNENGGF--RRKKS-FGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAG 191
Query: 198 LFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
LF++CGQVVDCRICGDPNSVLRFAF+EFTDEEGA AL+L+GTMLGFYPV+VLPSKTAIA
Sbjct: 192 LFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIA 251
Query: 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR 317
PVNPTFLPR+EDEREMC+RTIYCTNIDKKVTQ D+K+FFES CGEV RLRLLGDYQHSTR
Sbjct: 252 PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTR 311
Query: 318 IAFVEFAMVSEPFSWHAC 335
IAFVEF M + C
Sbjct: 312 IAFVEFVMAESAIAALNC 329
Score = 144 (55.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
E+ RT+Y ++ID++VT+ + F + CG+V R+ GD R AFVEF E A A
Sbjct: 266 EMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIA 325
Query: 234 ALSLAGTMLGFYPVR 248
AL+ +G +LG P+R
Sbjct: 326 ALNCSGVVLGSLPIR 340
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 187/335 (55%), Positives = 216/335 (64%)
Query: 1 MAVAENAGAKIDSSNQNLXXXXXXXXXXXXXXXXXXXKERSXXXXXXXXXXXXXTKPXXX 60
MAVAENAG K+DSS QNL ++S T
Sbjct: 1 MAVAENAGVKVDSSGQNLDNNNTAASATETTKPPCPDDDQSPKSDSSTPLTIDSTPETDD 60
Query: 61 XXXXFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXX 120
+ N GE + E++DL D SKLNPMA EFVPPSLA Q
Sbjct: 61 RINETAQKVQTLNGFSGN-GERDNNGEIKDLADAFSKLNPMAQEFVPPSLARSQ------ 113
Query: 121 XXXXXXXXXYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT 180
+TNNF A+ N H R+R + QGKRRMN RTS AQ+D+VIRRT
Sbjct: 114 SGVLRNGLGFTNNFAAPPK-LADGNDHFP--RRRRSFGQGKRRMNKRTSLAQKDDVIRRT 170
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGT 240
VYVSDIDQQVTEE LA +F+ CGQVVDCR+CGDPNSVLRFAF+EFT+EEGARAALS++GT
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGT 230
Query: 241 MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC 300
+LGFYP++VLPSKTAIAPVNPTFLPRSEDEREMC RT+YCTNIDK++TQ D+K FFE +C
Sbjct: 231 VLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLC 290
Query: 301 GEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335
GEV RLRL GDY H TRIAFVEFAM + C
Sbjct: 291 GEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324
Score = 173 (66.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 44/95 (46%), Positives = 59/95 (62%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLF-LTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
E+ RTVY ++ID+++T+ L F + CG+V R+ GD + R AFVEF E A A
Sbjct: 262 EMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIA 320
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE 268
AL +G +LG P+RV PSKT PV P F PR+E
Sbjct: 321 ALHCSGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 174/263 (66%), Positives = 200/263 (76%)
Query: 74 HMERKMG-ESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTN 132
H+ R G ESFK +MR+L ++LSKLNPMA EF+PPSL + N
Sbjct: 52 HVARSDGGESFKR-DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAV-----NN 105
Query: 133 NFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTE 192
F+ + N +G + RRK++ QGKRRMN RTS AQ++E+IRRTVYVSDIDQQVTE
Sbjct: 106 GFVAAGNFPVNEDG--SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTE 163
Query: 193 EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252
EQLA LF+ GQVVDCRICGDPNSVLRFAF+EFTDE GAR AL+L+GTMLGFYPV+V+PS
Sbjct: 164 EQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPS 223
Query: 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY 312
KTAIAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQ DIKLFFESVCGEV RLRLLGDY
Sbjct: 224 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDY 283
Query: 313 QHSTRIAFVEFAMVSEPFSWHAC 335
H TRI FVEF M + C
Sbjct: 284 HHPTRIGFVEFVMAESAIAALNC 306
Score = 171 (65.3 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
E+ RT+Y ++ID+++T+ + F + CG+V R+ GD + R FVEF E A A
Sbjct: 243 EMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIA 302
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE 268
AL+ +G +LG P+RV PSKT PV +PR +
Sbjct: 303 ALNCSGVLLGSLPIRVSPSKT---PVRSRAIPRHQ 334
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 157/252 (62%), Positives = 175/252 (69%)
Query: 87 EMRDLVDMLSKLNPMAAEFVPPSL---ANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTAN 143
+M LV M KLNP+A EF P N Q+ D A
Sbjct: 49 DMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQVAKANQFLPADDFETTKKQSGEEFDLDAK 108
Query: 144 TNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCG 203
+ +T RKR YSQG+RR+ R S AQ+++ IRRTVYVSDIDQ VTEE LA LF CG
Sbjct: 109 KDDNT---RKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCG 165
Query: 204 QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF 263
QVVDCRICGDP+SVLRFAFVEF D++GA ALSL GTMLGFYPVRVLPSKTAI PVNPTF
Sbjct: 166 QVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTF 225
Query: 264 LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 323
LPRSEDEREMC+RTIYCTNIDKKV+Q D++ FFES CGEV RLRLLGD HSTRIAFVEF
Sbjct: 226 LPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEF 285
Query: 324 AMVSEPFSWHAC 335
A+ S C
Sbjct: 286 ALADSALSALNC 297
Score = 161 (61.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
E+ RT+Y ++ID++V++ + F + CG+V R+ GD R AFVEF + A +
Sbjct: 234 EMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALS 293
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAP 258
AL+ +G ++G P+RV PSKT + P
Sbjct: 294 ALNCSGMVVGSQPIRVSPSKTPVRP 318
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 151/241 (62%), Positives = 177/241 (73%)
Query: 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTANTNG 146
+M+ LV M KLNP A EF P N +++F++ + N
Sbjct: 49 QMKKLVAMFKKLNPEAKEFFPSYKRN---------------TNQSDDFVIAIKPSGEDNK 93
Query: 147 HTT-TRRKRNGYSQGKR-RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ 204
RR+RN Y+QG+R R+ R S AQ+++ IRRTVYVSDIDQ VTEE LA LF +CGQ
Sbjct: 94 KVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQ 153
Query: 205 VVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL 264
VVDCRICGDPNSVLRFAFVEF+D++GAR+ALSL GTM+G+YPVRVLPSKTAI PVNPTFL
Sbjct: 154 VVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFL 213
Query: 265 PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
PRSEDEREMCSRTIYCTN+DK T+ D+ FF+S CGEV RLRLLGD HSTRIAFVEFA
Sbjct: 214 PRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFA 273
Query: 325 M 325
M
Sbjct: 274 M 274
Score = 173 (66.0 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
E+ RT+Y +++D+ TE+ + T F + CG+V R+ GD R AFVEF E A A
Sbjct: 221 EMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVA 280
Query: 234 ALSLAGTMLGFYPVRVLPSKTAI 256
AL+ +G +LG P+RV PSKT +
Sbjct: 281 ALNCSGIVLGSQPIRVSPSKTPV 303
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 632 (227.5 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 132/246 (53%), Positives = 169/246 (68%)
Query: 90 DLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTANTNGHTT 149
+L +S LNPMA EFVP LA +TN+F T G
Sbjct: 58 NLKSEISHLNPMAKEFVPSFLAQ-----THHSEFWGNRFWFTNHFPKQTIFLI---GQFA 109
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T R RN + +G+ + +T+ Q +++I+RTVYVSDID QVTEEQLA+LFL+CGQVVDCR
Sbjct: 110 TMR-RN-FGKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCR 167
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
+CGD S+LRFAF+EFTD EGAR+AL +GTM G +P+RV SKTAIAPVNP+FLP+S+D
Sbjct: 168 MCGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKD 227
Query: 270 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEP 329
E E C +T+YCTNIDK+VT+ +++ FF++VCGEV LRLLGD+ H TRIAFVEF +
Sbjct: 228 ELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESA 287
Query: 330 FSWHAC 335
S C
Sbjct: 288 ISALNC 293
Score = 163 (62.4 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 38/87 (43%), Positives = 56/87 (64%)
Query: 173 QDEVIR--RTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEE 229
+DE+ + +TVY ++ID++VT+ +L F T CG+V R+ GD R AFVEF E
Sbjct: 226 KDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAE 285
Query: 230 GARAALSLAGTMLGFYPVRVLPSKTAI 256
A +AL+ +G +LG P+RV PSKT +
Sbjct: 286 SAISALNCSGVVLGELPIRVSPSKTPV 312
Score = 66 (28.3 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 1 MAVAENAGAKIDSSN-QNL 18
MAVAEN G K+DSSN QN+
Sbjct: 1 MAVAENVGVKVDSSNNQNI 19
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 153 (58.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 231 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 287
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 288 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
T D L FF+ V GEV+ +R+ GD TR AFVEFA
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFA 117
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 153 (58.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 231 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 287
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 288 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
T D L FF+ V GEV+ +R+ GD TR AFVEFA
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFA 117
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 153 (58.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 231 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 287
A ++L ++ + LG P L P+ T + + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 288 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
T D L FF+ V GEV+ +R+ GD TR AFVEFA
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFA 117
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 153 (58.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 62 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 120
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 121 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 153 (58.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 62 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 120
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 121 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 153 (58.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G V R+ GD RFAFVEF D++
Sbjct: 167 DE-IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVA 225
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 226 RALTYNGVMFGDRPLKINHSNNAIVKP-PELTPQA 259
Score = 102 (41.0 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 247 VRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKL-FFESVCGEVQR 305
V L + +A P+ P DE RT+Y N++ + T D L FF+ V G+V+
Sbjct: 145 VATLSAVSAQPPLMGNVDPSKVDE---IRRTVYVGNLNSQSTTADQLLKFFKQV-GDVKF 200
Query: 306 LRLLGDYQHSTRIAFVEFA 324
+R+ GD TR AFVEFA
Sbjct: 201 VRMAGDETQPTRFAFVEFA 219
Score = 55 (24.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 13/65 (20%), Positives = 32/65 (49%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 236
+ ++++ V+ +Q+ TLF G + + R+ N+ L F+ ++++ + A
Sbjct: 10 IQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKYREPSSVGVAQH 69
Query: 237 LAGTM 241
L T+
Sbjct: 70 LTNTV 74
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 153 (58.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 178 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 236
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 237 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 270
Score = 108 (43.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 235 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 291
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 197
Query: 292 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
L FF+ V GEV+ +R+ GD TR AFVEFA
Sbjct: 198 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFA 230
Score = 77 (32.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 236
+ V+++ VT EQ+ TLF G++ + R+ N+ L F+ +V+F D A
Sbjct: 21 IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQH 80
Query: 237 LAGTM 241
L T+
Sbjct: 81 LTNTV 85
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 48/193 (24%), Positives = 89/193 (46%)
Query: 149 TTRRKRNGYSQGK---RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205
T ++ G + K + T N ++D V+ +YV I Q TE+++ + F +CG +
Sbjct: 128 TPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVI 187
Query: 206 --VDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF 263
VDC++ + + AF+ F E+GA+ AL+ +G R L + + P+
Sbjct: 188 IKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGD---RYLTIQQYVKTTTPS- 243
Query: 264 LPRSEDER----EMCS--RTIYCTNIDKKVTQGDI-KLFFESVCGEVQ--RLRLLGDYQH 314
+PR + EM +Y N+ T+ DI KLF + V V+ + + G+++
Sbjct: 244 IPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKG 303
Query: 315 STRIAFVEFAMVS 327
+ F + V+
Sbjct: 304 YAHVDFKDSVSVA 316
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 141 (54.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 164 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 222
Query: 233 AALSLAGTMLGFYPVR 248
AL+ G M G P++
Sbjct: 223 RALAFNGVMFGDRPLK 238
Score = 117 (46.2 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 239 GTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGDIKL- 294
GT LG P L P+ TA+ + P + + + + RT+Y N++ + T D L
Sbjct: 129 GT-LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 187
Query: 295 FFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
FF+ V GEV+ +R+ GD TR AFVEFA
Sbjct: 188 FFKQV-GEVKFVRMAGDETQPTRFAFVEFA 216
Score = 66 (28.3 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 236
+ V+++ VT EQ+ TLF G + + R+ N+ L F+ +++F + A
Sbjct: 7 IQVTNLSLAVTSEQMRTLFGFLGDIEELRLYPPDNAPLAFSSKVCYIKFREASSVGVAQH 66
Query: 237 LAGTM 241
L T+
Sbjct: 67 LTNTV 71
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 45/169 (26%), Positives = 80/169 (47%)
Query: 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 225
+T + +E +Y+ ++D V+E+ L F G++V I D N + R +AFV F
Sbjct: 190 KTDRVKPEEKYTN-LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNF 248
Query: 226 TDEEGAR-AALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYC 280
+ E AR AA ++ GT G Y R + F + E+++ + IY
Sbjct: 249 DNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYV 308
Query: 281 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMVSE 328
N++ VT+ +++ F S CG + +L+ D + ++ FV F+ E
Sbjct: 309 KNVNVAVTEEELRKHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEE 356
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTD 227
++ + ++VYV ++D VT E+L + F +CG V + C + G P FA++EF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 228 EEGARAALSLAGTMLGFYPVRVLPSKTAI 256
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 133 (51.9 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 48/172 (27%), Positives = 84/172 (48%)
Query: 159 QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVL 218
+ + R R+S ++E RRTV+VS + ++T +L F G V D +I D S
Sbjct: 220 RSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 219 R--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR 276
A+VEF E+ +AA++L+G L PV V ++ A N +E R +
Sbjct: 280 SKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTE---AEKNRKAREAAELARAASAE 336
Query: 277 TIY---C-TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEF 323
+ C +NI +T D+K FE G+++ + L D Q+ ++ ++++
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYIQY 387
Score = 42 (19.8 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 139 DGTANTNGHTTTRRKRNGYS 158
D N++ H T R R YS
Sbjct: 102 DVVTNSSSHRTPRHHRRSYS 121
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 121 (47.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-R 209
N SQ + T ++ E ++VYV ++D T E++ F CG V + C R
Sbjct: 55 NTSSQSNSSQSLLTPE-EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDR 113
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254
G P FA+VEFT++EG + AL++ ++L ++V P +T
Sbjct: 114 FSGHPKG---FAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRT 155
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 118 (46.6 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQV--VDC---RICGDPNSVLRFAFVEFTDEEGAR 232
RR++YV ++D T ++L F +CG V V R G P FA++EF+D E R
Sbjct: 65 RRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFSDRESVR 121
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
A++L T+ ++V P +T I + T
Sbjct: 122 TAMALDETLFRGRVIKVSPKRTNIPGFSTT 151
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 114 (45.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 40 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 96
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 35/147 (23%), Positives = 70/147 (47%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLAG 239
+Y+ ++++ + + + F G +++C + D + R + FV F EE ARAA+
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 240 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS--RTIYCTNIDKKVTQGDIKLFFE 297
ML + + V F+PR + E+E + + +Y N+ ++ T+ ++ FE
Sbjct: 175 GMLC--------NNQKVHVVK--FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFE 224
Query: 298 SVCGEVQRLRLLGDYQ-HSTRIAFVEF 323
G + +L+ D + S R FV +
Sbjct: 225 PY-GRITSHKLMLDEEGRSRRFGFVAY 250
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 124 (48.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 36/149 (24%), Positives = 68/149 (45%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS 236
R V+V ++D+ + +QL +F G+V+ C++ D + V + + FV+F + A +
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 237 LA-GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
GT++ + V P F+ R + ++ +Y N+ + T D+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 296 FESVCGEVQRLRLLGDYQ-HSTRIAFVEF 323
F GE+ ++ D + S R FV F
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNF 166
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 114 (45.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 40 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 96
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 120 (47.3 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 50/161 (31%), Positives = 76/161 (47%)
Query: 168 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFT 226
+SN + D+ ++ V+V + VTE L F CG + + +I +P V AF+ F
Sbjct: 67 SSNTKTDDDLK--VFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRVA--AFITFA 122
Query: 227 DEEGARAALSLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 285
DE+G A++ G G +R+ + + P S+ E E TI C NI
Sbjct: 123 DEKGRDTAITYNGKDFNGQGSLRINGANS-----KP-----SDGEGE--PTTIVCRNIAF 170
Query: 286 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI---AFVEF 323
V + +K FF S CG + R+ L Y+ S R+ AFV F
Sbjct: 171 TVDETLVKEFF-SKCGSISRVSL-PVYEDSGRLKGFAFVSF 209
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 100 (40.3 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-CGDPNSVLR-FAFVEFTDEEGA-RAALS 236
+VYV + Q TEE+L F + GQ+ + RI C R FAF+EF +E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 237 LAGTMLGFYPVRV 249
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>GENEDB_PFALCIPARUM|PFF0300w [details] [associations]
symbol:PFF0300w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966051.1
ProteinModelPortal:C6KSQ9 EnsemblProtists:PFF0300w:mRNA
GeneID:3885781 KEGG:pfa:PFF0300w EuPathDB:PlasmoDB:PF3D7_0606100
HOGENOM:HOG000281446 ProtClustDB:CLSZ2497377 Uniprot:C6KSQ9
Length = 582
Score = 123 (48.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 39/156 (25%), Positives = 70/156 (44%)
Query: 96 SKLN-PMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTANTNGHTTTRRKR 154
S LN PM + P + N + N+ + + N T +K+
Sbjct: 71 SLLNVPMVVSVIEPIINNTNLSELSTTECDKN----VNSLLDVRNSITNQGVQTLLLQKQ 126
Query: 155 NGYSQGKRRMNCRTS-NAQQD--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
Q KR ++ + S N + + +V + VY+ +I ++ EE + F G ++
Sbjct: 127 VISEQKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQ 186
Query: 212 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 247
+ + AFVEF +EE A+AAL+L+GT +G + +
Sbjct: 187 YNEQKKVHTAFVEFKNEEHAKAALNLSGTKVGLHEI 222
Score = 41 (19.5 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGE 302
E+C R Y DK + + + + + GE
Sbjct: 221 EICIRDAYSLINDKDILKNNFSFYSNNTTGE 251
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 40/153 (26%), Positives = 64/153 (41%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSL 237
+T++ ++ Q+ + F G+VVD R+ D S + +EF E A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
G +L VR+ + P N P + E SRTIY + + +IK
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSN--PGRKGEGSQ-SRTIYVRGFSSSLGEDEIKKELR 500
Query: 298 S---VCGEVQRLRLLGDYQHSTRIAFVEFAMVS 327
S CGEV R+ + D + F + S
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 43/130 (33%), Positives = 63/130 (48%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSLAG 239
+YV++ E + LF G VVD R N+ RF +V+ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 240 TMLGF-YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
+L YP++V S P+ T PRS E R +Y TNID KV + D++ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 299 VCGEVQRLRL 308
G+V+ +R+
Sbjct: 780 Y-GQVESVRI 788
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA-RAALSL 237
++Y++++D QV+EE L +F G+V+ + D R FAF+EF + A RA L +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 238 AGTMLG 243
G ++G
Sbjct: 78 DGRLIG 83
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 53/199 (26%), Positives = 86/199 (43%)
Query: 140 GTANTNGHTTTRRKRN----GYSQGKRRMNCRTSNAQQDEVIRRT----VYVSDIDQQVT 191
G A N +TT ++ Y+ K R CR +Q+D +R+T V++ ++D +
Sbjct: 103 GYAYVNYNTTADGEKALEELNYTLIKGRP-CRIMWSQRDPALRKTGQGNVFIKNLDVAID 161
Query: 192 EEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF-TDEEGARAALSLAGTMLGFYPVRV 249
+ L F G ++ C++ D N + + FV + TDE ++A + G +L V V
Sbjct: 162 NKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221
Query: 250 ---LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL 306
+P K F DE + IY NI+ +VT + + FE G+V
Sbjct: 222 GHHIPKKDR----QSKF-----DEMKANFTNIYVKNINPEVTDDEFRTLFEKY-GDVTSS 271
Query: 307 RLLGDYQ--HSTRIAFVEF 323
L D + S FV F
Sbjct: 272 SLARDQETGKSRGFGFVNF 290
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGA-RAALS 236
+VYV ++ Q TEE++ F G V + RI D + FAFVEF++E GA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 237 LAGTMLGFYPVRV 249
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 40/158 (25%), Positives = 76/158 (48%)
Query: 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
DE +T+YV ++D V+E+ L LF T G V C+I +P + +AF+E+++ + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
AL+ L + + + A +P N P+++ I+ ++ ++ ++
Sbjct: 61 ALTAMNKRL--FLEKEIKVNWATSPGNQ---PKTDISSH---HHIFVGDLSPEIETETLR 112
Query: 294 LFFESVCGEVQRLRLLGDYQHSTR---IAFVEFAMVSE 328
F GE+ R++ D H+ + AFV F +E
Sbjct: 113 EAFAPF-GEISNCRIVRD-PHTMKSKGYAFVSFVKKAE 148
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 230 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF--LPRS 267
R +L+L ++ ++V+P +T ++ T PRS
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRS 260
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 44/178 (24%), Positives = 76/178 (42%)
Query: 139 DGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATL 198
D + G T + R+R+ + R S ++D RTV+ + Q+V L
Sbjct: 201 DRNSRRRG-TNSPRRRSPPNGADRTTPTELSPEERDA---RTVFCIQLSQRVRARDLEEF 256
Query: 199 FLTCGQVVDCRI--CGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS---K 253
F + G+V D R+ C A++EF D E AL L+G L P+ V + K
Sbjct: 257 FSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEK 316
Query: 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD 311
+ P F P+S +Y ++ +T+ ++ FE G++ ++L+ D
Sbjct: 317 NRLQNAAPAFQPKSHTG----PMRLYVGSLHFNITEDMLRGIFEPF-GKIDAIQLIMD 369
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 104 (41.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 40/161 (24%), Positives = 67/161 (41%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLR--FAFVEFTDE 228
+Q E TV+V D+ VT+ L F V ++ D + + FV F DE
Sbjct: 166 RQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADE 225
Query: 229 -EGARAALSLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRSEDEREMCSRTIYCTNI 283
E RA + G P+R P+ + P + + E + + TI+ +
Sbjct: 226 SEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAV 285
Query: 284 DKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
D+ VT+ D+K F GE+ +++ R FV++A
Sbjct: 286 DQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYA 321
Score = 54 (24.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 133 NFIMHTDG-TANTNGHTTTRRKRNGYSQG 160
N++M+ G T R K+NGYS+G
Sbjct: 94 NYLMNVFGLTGEATAAKVIRNKQNGYSEG 122
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 50/191 (26%), Positives = 85/191 (44%)
Query: 142 ANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLAT 197
+NT+ +K N YS +M R + + +D RR+ ++V ++D+ V + L
Sbjct: 95 SNTDDAEKAMQKLN-YSYLNGKM-IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHE 152
Query: 198 LFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 256
F CG +V C++ D R + FV+F E+ A+ A+ + G +VL K
Sbjct: 153 AFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIE---KLNG----KVLNDKQIF 205
Query: 257 APVNPTFLPRSEDER---EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ 313
V P FL + E E +M +Y N+ + T ++K F G + ++ D
Sbjct: 206 --VGP-FLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQY-GSISSAVVMRDGD 261
Query: 314 HSTR-IAFVEF 323
+R FV F
Sbjct: 262 GKSRCFGFVNF 272
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 114 (45.2 bits), Expect = 0.00028, P = 0.00028
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 137 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 193
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 194 SVRTSLALDESLFRGRQIKVIPKRT 218
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 42/158 (26%), Positives = 75/158 (47%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEE 229
QQ + VYV I ++ E+ + F G + + DP + FAFVE+ E
Sbjct: 123 QQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPE 182
Query: 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288
GA+ AL + G ++G ++V + + P + ++E + +R IY +I ++
Sbjct: 183 GAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLS 239
Query: 289 QGDIKLFFESVCGEVQRLRLL-GDYQHSTR-IAFVEFA 324
+ DIK FE+ G + +L G H+ + F+E+A
Sbjct: 240 EEDIKSVFEAF-GPILYCKLAQGTSLHTHKGYGFIEYA 276
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 42/176 (23%), Positives = 80/176 (45%)
Query: 140 GTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT-VYVSDIDQQVTEEQLATL 198
G A N + N + N +N +E +T + V+ + Q ++++++ +L
Sbjct: 70 GQATANNAASNNNNNNNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSL 129
Query: 199 FLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255
F++ G+V C++ D L + FV + +E A A++ L G L ++V +
Sbjct: 130 FVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKV-----S 184
Query: 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD 311
IA P SE + +Y + + K +TQ D++ F S G++ R+L D
Sbjct: 185 IAR------PSSESIK---GANLYVSGLPKNMTQSDLESLF-SPYGKIITSRILCD 230
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 111 (44.1 bits), Expect = 0.00034, P = 0.00034
Identities = 29/120 (24%), Positives = 60/120 (50%)
Query: 148 TTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-- 205
T ++ Y++G + S ++ E+ +R+VYV ++D T + L F +CG +
Sbjct: 65 THSKMTAGAYTEGPPQP---LSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINR 121
Query: 206 --VDC-RICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
+ C + G P +A++EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 122 ITILCDKFSGHPKG---YAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 111 (44.1 bits), Expect = 0.00034, P = 0.00034
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 157 YSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RIC 211
Y++G R S ++ E+ +R+VYV ++D T + L F +CG + + C +
Sbjct: 74 YTEGPPRP---LSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFS 130
Query: 212 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
G P +A++EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 131 GHPKG---YAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 114 (45.2 bits), Expect = 0.00035, P = 0.00035
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 42/167 (25%), Positives = 70/167 (41%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D V + +
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + I
Sbjct: 173 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNI 225
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
Y NID +V + + FE GE+ L D + +R FV F+
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKF-GEITSATLSRDSEGKSRGFGFVNFS 271
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 113 (44.8 bits), Expect = 0.00043, P = 0.00043
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 158 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKE 214
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 215 SVRTSLALDESLFRGRQIKVVPKRT 239
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00048
Identities = 20/76 (26%), Positives = 39/76 (51%)
Query: 171 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 226
+Q+D +R++ V++ ++D+ + + L F G ++ C++ D N +AFV F
Sbjct: 31 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFE 90
Query: 227 DEEGARAALSLAGTML 242
+E A A+ ML
Sbjct: 91 TQEAADKAIEKMNGML 106
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 112 (44.5 bits), Expect = 0.00057, P = 0.00057
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKE 215
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 109 (43.4 bits), Expect = 0.00058, P = 0.00058
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA 231
++EV R+VYV ++D T E++ F TCG V I D + FA+VEF + E
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAV 142
Query: 232 RAALSLAGTMLGFYPVRVLPSKTAI 256
+ AL L + L ++V P +T +
Sbjct: 143 QEALQLNESELHGRQLKVSPKRTNV 167
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 111 (44.1 bits), Expect = 0.00073, P = 0.00073
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R+VYV ++D + T +L F CG++ + C + G P +A++EF E
Sbjct: 158 EADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFATES 214
Query: 230 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
A+AA+ L ++ ++VLP +T ++ T
Sbjct: 215 SAQAAVELDNSVFRGRVIKVLPKRTNFPGISST 247
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 111 (44.1 bits), Expect = 0.00074, P = 0.00074
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFCDKE 215
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>ASPGD|ASPL0000008076 [details] [associations]
symbol:AN6004 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 EMBL:AACD01000102 eggNOG:NOG67475
HOGENOM:HOG000163072 OrthoDB:EOG4C5GTR RefSeq:XP_663608.1
ProteinModelPortal:Q5B0C6 EnsemblFungi:CADANIAT00007014
GeneID:2871044 KEGG:ani:AN6004.2 OMA:HQLRANA Uniprot:Q5B0C6
Length = 270
Score = 110 (43.8 bits), Expect = 0.00078, P = 0.00078
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC---GDPNSVLRFAFVEFTDEEGARAA 234
R TV+VS+ID +E+++ F CG++V + G+P S L+ A V F + A+ A
Sbjct: 4 RTTVHVSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGS-LKSATVTFEKDAAAKTA 62
Query: 235 LSLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRSEDERE 272
L L T LG V V ++T IA + ++DE +
Sbjct: 63 LLLDQTQLGPSVVTVKAAQTLDEIAGEHSATAAEAKDENQ 102
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 91 (37.1 bits), Expect = 0.00081, P = 0.00080
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 237
RT++V +++ +VTEE L LF G V+ +I D + + FAFV F E A++L
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 238 A-GTMLGFYPVRV 249
G L P+++
Sbjct: 70 LNGIKLYGRPIKI 82
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T RK NGY Q M T + +++ T++V +D VT+E L F G++V +
Sbjct: 275 TPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249
I FV+F + A AL L GT++G VR+
Sbjct: 335 IPVGKGC----GFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 110 (43.8 bits), Expect = 0.00092, P = 0.00092
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFV 223
S ++ E R++YV ++D T ++L F CG++ + C + G P +A++
Sbjct: 149 SPLEKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYI 205
Query: 224 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
EF E A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 206 EFATESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 244
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 337 284 0.00085 115 3 11 22 0.48 33
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 58
No. of states in DFA: 602 (64 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.50u 0.11s 23.61t Elapsed: 00:00:01
Total cpu time: 23.51u 0.11s 23.62t Elapsed: 00:00:01
Start: Fri May 10 02:03:44 2013 End: Fri May 10 02:03:45 2013