BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019691
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 177 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 236 SLAGTMLGFYPVRVLPSKTAI 256
+ G M G P+++ S AI
Sbjct: 124 AFNGVMFGDRPLKINHSNNAI 144
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
RT+Y N++ + T D L F GEV+ +R+ GD TR AFVEFA
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFA 114
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 177 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 236 SLAGTMLGFYPVRVLPSKTAI 256
+ G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL T LG P L + V+P+ + DE RT+Y N++ + T D
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
L F GEV+ +R+ GD TR AFVEFA
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFA 117
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 177 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 236 SLAGTMLGFYPVRVLPSKTAI 256
+ G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL T LG P L + V+P+ + DE RT+Y N++ + T D
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
L F GEV+ +R+ GD TR AFVEFA
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFA 117
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 237
+T++V ++ V +EQ+ F G+VVD R + R F VEF E A+ AL L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-------EDEREMCSRTIYCTNIDKKVTQG 290
AG L PVR+ +A + P S + + TI+ D +
Sbjct: 509 AGHDLMGRPVRL-----DLARERGAYTPGSGRDNSSFKKPAQSSGNTIFIKGFDTSLDIH 563
Query: 291 DIKLFFES---VCGEVQRLRLLGDYQ--HSTRIAFVEFA 324
I+ E CGE+ R+ + DY+ S +A+++FA
Sbjct: 564 QIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFA 602
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
++VYV ++D VT E+L + F +CG V + C + G P FA++EF++
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSEPSLVPN 111
Query: 234 ALSLAGTMLGFYPVRVLPSKTAI 256
AL L G+ML P++V P +T +
Sbjct: 112 ALLLNGSMLHERPLKVTPKRTNV 134
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMV 326
D+ + ++++Y N+D VT +++ F S CG V R+ +L D H A++EF
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEF--- 103
Query: 327 SEP 329
SEP
Sbjct: 104 SEP 106
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 324
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFS 221
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 324
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFS 221
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFT 226
++ E R++YV ++D T E+L F CG V + C + G P FA++EF+
Sbjct: 161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFS 217
Query: 227 DEEGARAALSLAGTMLGFYPVRVLPSKT 254
D+E R +L+L ++ ++V+P +T
Sbjct: 218 DKESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 324
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFS 217
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSLAG 239
+YV++ E + LF G VVD R N+ RF +V+ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 240 TML-GFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
+L YP++V S P+ T PRS E R +Y TNID KV + D++ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 299 VCGEVQRLRL 308
G+V+ +R+
Sbjct: 780 Y-GQVESVRI 788
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 238
R +YV++ID +V E+ + T F GQV RI N F +V T + A ALS A
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 239 GTMLGFYPVRVLPS-------KTAIAPVNPTFLPRSEDERE-------------MCSRTI 278
G LG + V+ S KT ++ + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 323
TN+D V + ++ FES G++ R+ L +++ A VEF
Sbjct: 877 GVTNVDGTVNEARLRSLFESY-GKLYRVVLHPEHEG----AVVEF 916
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVS 327
E R T+ TN+ +++ ++K+FF+ CG + R+ +L D Q ++A +EF+ S
Sbjct: 582 EQHRNREELTVLVTNLPSDISENELKIFFKD-CGNIIRIFILEDNQKDVKVAQIEFSETS 640
Query: 328 E 328
E
Sbjct: 641 E 641
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAA 234
TV V+++ ++E +L F CG ++ I D ++ A +EF++ AA
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAA 645
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 168 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 225
T+ Q E + ++YV D+D V+E L +F G V R+C D + L +A+V F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 226 TDEEGARAALSLAGTMLGFYPVR 248
D + A+ A+ L F P++
Sbjct: 84 NDHDAAKTAIE----KLNFTPIK 102
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKESVRT 218
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 219 SLALDESLFRGRQIKVVPKRT 239
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 324
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFS 211
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 168 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 225
T+ AQQ ++YV ++D VTE L LF + GQV R+C D L +A+V +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 226 -TDEEGARAALSLAGTMLGFYPVRVLPSK 253
+ E+G +A L T++ P R++ S+
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIMWSQ 125
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 221 AFVEFTDEEGARAALS-LAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRSEDEREMCSR 276
FV + E A A+ + G +L V V +P K ++ +E +
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---------EEMKANFT 229
Query: 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEF 323
IY NID VT D + FE G++ + D Q +R FV +
Sbjct: 230 NIYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNY 276
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+YV +ID VT+E LF G + I D R F FV + E A A+
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 165 NCRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR- 219
+CR +Q+D +R+T +++ ++DQ + + L F G ++ C++ D N R
Sbjct: 116 SCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRG 175
Query: 220 FAFVEFTDEEGARAALSLAGTML 242
FAFV ++ E A AA+ ML
Sbjct: 176 FAFVHYSTGEAADAAIKAVNGML 198
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARA 233
+ ++YV ++D VTE L +F G V R+C D L +A+V + + +G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 294 LFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
F + G++ ++ D +R AFV ++
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYS 182
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ GK+ R S ++ VY+ ++D +VT+ + L G + + D
Sbjct: 207 GHHVGKKE---RLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEK 263
Query: 216 SVLR-FAFVEFTDEEGARAAL 235
V + F FV + + E AR A+
Sbjct: 264 GVSKGFGFVNYENHESARKAV 284
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 165 NCRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR- 219
+CR +Q+D +R+T +++ ++DQ + + L F G ++ C++ D N R
Sbjct: 116 SCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRG 175
Query: 220 FAFVEFTDEEGARAALSLAGTML 242
FAFV ++ E A AA+ ML
Sbjct: 176 FAFVHYSTGEAADAAIKAVNGML 198
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARA 233
+ ++YV ++D VTE L +F G V R+C D L +A+V + + +G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 294 LFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
F + G++ ++ D +R AFV ++
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYS 182
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ GK+ R S ++ VY+ ++D +VT+ + L G + + D
Sbjct: 207 GHHVGKKE---RLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEK 263
Query: 216 SVLR-FAFVEFTDEEGARAAL 235
V + F FV + + E AR A+
Sbjct: 264 GVSKGFGFVNYENHESARKAV 284
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T RK NGY Q M T + +++ T++V +D VT+E L F G++V +
Sbjct: 275 TPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 210 I-----CGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVRV 249
I CG FV+F + A AL L GT++G VR+
Sbjct: 335 IPVGKGCG---------FVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 191
Query: 221 AFVEF-TDEEGARAALSLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRSEDEREMCSR 276
FV + TDE ++A + G +L V V +P K + DE +
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF---------DEMKANFT 242
Query: 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEF 323
IY NI+ +VT + + FE G+V L D + S FV F
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKY-GDVTSSSLARDQETGKSRGFGFVNF 290
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF-TDEEGARAALS 236
++YV ++D VTE L LF G V R+C D L +A+V + T +G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 122 LNYTLIKGRPCRIMWSQ 138
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAAL 235
+YV +I+ +VT+++ TLF G V + D + F FV FT E A A+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKESVRT 219
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 220 SLALDESLFRGRQIKVVPKRT 240
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFA 324
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFS 212
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
CR +Q+D +R+ +Y+ ++ + + L F T G ++ C++ D N V R F
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGF 168
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV F +E AR A+ ML + + ++ + R E+ ++ +
Sbjct: 169 GFVHFENESDARDAIEAVDGML-------MNDQEVYVALHVSKKDRQSKLEEVKAKFTNV 221
Query: 279 YCTNIDKKVTQGDIKLFF 296
Y NID++ +Q + + F
Sbjct: 222 YVKNIDQETSQEEFEELF 239
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEE-GARAALS 236
++YV +++ V+E L +F G V R+C D N+ L +A+V F D E G +A
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ S IY N+ + + F
Sbjct: 99 LNYTLIKGKPCRIMWSQ------------RDPSLRKKGSGNIYIKNLHPAIDNKSLHETF 146
Query: 297 ESVCGEVQRLRLLGDYQHSTR-IAFVEF 323
S G + ++ D +R FV F
Sbjct: 147 -STFGNILSCKVATDENGVSRGFGFVHF 173
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VYV +IDQ+ ++E+ LF G++ + D LR F FV F D A A+
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAV 276
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T RK NGY Q M + + I T++V +D VT+E L F G++V +
Sbjct: 277 TPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVK 336
Query: 210 I-----CGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVRV 249
I CG FV+F + A AL L GT++G VR+
Sbjct: 337 IPVGKGCG---------FVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF D+E R
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFCDKESVRT 219
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 220 SLALDESLFRGRQIKVVPKRT 240
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEF 323
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEF 211
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLA 238
T+++ ++ + ++Q+ F G+V+ R+ + R F V+F E A+ AL L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELH 371
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRS-------EDEREMCSRTIYCTNIDKKVTQGD 291
G L PVR+ +A + P S + + S++I+ D + +
Sbjct: 372 GCDLDGRPVRL-----DLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESK 426
Query: 292 IKLFFE---SVCGEVQRLRLLGDYQ--HSTRIAFVEF 323
I+ E + CGE+ R+ + D + S IA+++F
Sbjct: 427 IRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDF 463
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 179 RTVYVSDIDQQVTE----EQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGAR 232
++++V D + E E L F CG++ + D + A+++F D+
Sbjct: 411 QSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFS 470
Query: 233 AALSLAGTMLGFY 245
AL L+G+ LG Y
Sbjct: 471 KALELSGSDLGGY 483
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 234
T+++ +++ TEE+L +F G V C I N + F FVE+ E A+ A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 235 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L L G ++ + + V S+ A P T + + R+ + I NI + +I+
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPAV-TLARKKQVPRKQTTSKILVRNIPFQAHSREIR 849
Query: 294 LFFESVCGEVQRLRL 308
F S GE++ +RL
Sbjct: 850 ELF-STFGELKTVRL 863
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 179
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 180 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 232
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
Y NID+ VT+ + + FE GE+ L D + +R FV F+
Sbjct: 233 YIKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFS 278
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 110 LNYTLIKGKPCRIMWSQ 126
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VY+ +IDQ VTEE+ LF G++ + D R F FV F+ E A+AA+
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 287
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + D G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 103 LNYTLIKGKPCRIMWSQ 119
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 132 NNFIMHTDGTANTN-----GHTTTRRKRNGYSQGK-RRMNCRTSNAQQDEVIRRTVYVSD 185
NN I H +G + GH +++ R Q K M +N +Y+ +
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDR----QSKFEEMKANFTN----------IYIKN 229
Query: 186 IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
ID +V +E+ LF G++ + D R F FV F+ E A+AA+
Sbjct: 230 IDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 159 QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NS 216
Q ++ S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 217 VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR 276
L +A+V F D E R A+ L + P++ + + +P+ R+ S
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 277 TIYCTNIDKKVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR-IAFVEF 323
I+ N+ + D K ++ SV G++ ++ D ++ FV F
Sbjct: 127 NIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHF 173
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 225
R S ++ + +YV +I+ + T+EQ LF G +V + D + L+ F FV +
Sbjct: 207 RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNY 266
Query: 226 TDEEGARAAL 235
E A A+
Sbjct: 267 EKHEDAVKAV 276
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFV 223
S ++ E+ +R+VYV ++D T + L F +CG + + C + G P +A++
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 224 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 267 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 324
+E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EFA
Sbjct: 84 AEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFA 142
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEG 230
++E RRTV+VS + ++T +L F G V D +I D S A+VEF E+
Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDS 293
Query: 231 ARAALSLAGTMLGFYPVRV 249
+AA++L+G L PV V
Sbjct: 294 VQAAIALSGKRLLGLPVIV 312
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 157 YSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RIC 211
Y++G R S ++ E+ +R+VYV ++D T + L F +CG + + C +
Sbjct: 74 YTEGPPRP---LSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFS 130
Query: 212 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
G P +A++EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 131 GHPKG---YAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 267 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 324
+E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EFA
Sbjct: 84 AEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFA 142
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 183 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
Y NID++VT + + FE GE+ L D + +R FV F+
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFS 281
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VY+ +IDQ+VT+E+ +F G++ + D R F FV F+ + A+AA+
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 237
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 238 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 296 FES-----VCGEVQRLRLLGDYQHSTRIAFVEFA 324
+++ V + ++ D +S AF+ FA
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 150
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 183 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
Y NID++VT + + FE GE+ L D + +R FV F+
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFS 281
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VY+ +IDQ+VT+E+ +F G++ + D R F FV F+ + A+AA+
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + G V R+C D L +A+V F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 287
L T++ P R++ S+ R R+M + ++ N+D +
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAI 179
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 146 GHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205
GH +RR+R + + +N VY+ ++D ++TE++ + LF G++
Sbjct: 241 GHHVSRRERQSKVEA---LKANFTN----------VYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 206 VDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+ D N R F FV + + E A+ A+
Sbjct: 288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGA-RAALSL 237
++Y D+D +VTE L LF VV R+C D N L +A++ F++ A RA +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 298 S 298
+
Sbjct: 155 T 155
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALSL 237
TVYV +D++V+E L LFL G VV+ + D + + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 238 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 296 FES-----VCGEVQRLRLLGDYQHSTRIAFVEFA 324
+++ V + ++ D +S AF+ FA
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 150
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALSL 237
TVYV +D++V+E L LFL G VV+ + D + + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 238 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 296 FES-----VCGEVQRLRLLGDYQHSTRIAFVEFA 324
+++ V + ++ D +S AF+ FA
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 150
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VY+ ++D ++ +++ +F G++ + D R F FV F+ E A+AA+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 109 LNYTLIKGKPCRIMWSQ 125
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 178
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 179 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 231
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
Y N+D+++++ + + FE GE+ L D + +R FV ++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNYS 277
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VY+ ++DQ+++EE+ +F G++ + D R F FV ++ + A+AA+
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF--AFVEFTDEEGARAAL-SL 237
+ V+ + Q +T+ +L LF TCG + CRI D + F AFV+F E A+ A+ SL
Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
G VR K + A P E ++ +Y TN+ + +T +++ F
Sbjct: 147 NGVT-----VRNKRLKVSYA------RPGGESIKDT---NLYVTNLPRTITDDELEKIFG 192
Query: 298 SVCGEVQRLRLLGDYQHSTR-IAFVEF 323
VQ+ L R +AFV F
Sbjct: 193 KYGNIVQKNILRDKLTGKPRGVAFVRF 219
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-----R 209
NG + +R+ + + + +YV+++ + +T+++L +F G +V +
Sbjct: 147 NGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 206
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALS 236
+ G P V AFV F E A+ A+S
Sbjct: 207 LTGKPRGV---AFVRFNKREEAQEAIS 230
>sp|Q9CQT2|RBM7_MOUSE RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1
Length = 265
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 237
RT++V +++ +VTEE L LF G V+ +I D + L+ FAFV F E A++L
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69
Query: 238 A-GTMLGFYPVRV 249
G L P+++
Sbjct: 70 LNGIKLFGRPIKI 82
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 112 LNYTLIKGKPCRIMWSQ 128
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 122 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 181
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTI 278
FV + E A A+ ML L K + + R DE + I
Sbjct: 182 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNI 234
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFA 324
Y NID VT+ + + FE GE+ L D + +R FV ++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNYS 280
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+Y+ +ID VTEE+ +F G++ + DP R F FV ++ E A+AA+
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAV 289
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 237 LAGTMLGFYPVRVLPSK 253
L T++ P R++ S+
Sbjct: 116 LNYTLIKGRPCRIMWSQ 132
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAAL 235
VYV +IDQ TEE+ LF G++ + D S F FV FT + A AA+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 52/236 (22%)
Query: 133 NFIMHTDG-TANTNGHTTTRRKRNGYSQG----------KRRMNCRTSNA---------- 171
N++M+ G T R K+NGYS+G N +T N
Sbjct: 94 NYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAF 153
Query: 172 ------------QQDEVIRRTVYVSDIDQQVTEEQLATLF------LTCGQVVDCRICGD 213
+Q E TV+V D+ VT+ L F + +VV+ R G
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213
Query: 214 PNSVLRFAFVEFTDE-EGARAALSLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRSE 268
+ FV F DE E RA + G P+R P+ + P + +
Sbjct: 214 SKG---YGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNS 270
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
E + + TI+ +D+ VT+ D+K F GE+ +++ R FV++A
Sbjct: 271 GESDPTNTTIFVGAVDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYA 321
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 147 HTTTRRKRNGYSQGKRRMNCRTS-------NAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+ ++R R G + K+ + + + N+ + + T++V +DQ VTE+ L ++F
Sbjct: 239 YCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVF 298
Query: 200 LTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249
G++V +I R FV++ + A ALS L GT LG +R+
Sbjct: 299 GQFGELVHVKIPAG----KRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 234
T+++ +++ TEE L +F G + C I N + F FVE+ E A+ A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 235 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L L G + + + V S+ A P + + +++ S+ I NI + Q +I+
Sbjct: 783 LKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIPFQANQREIR 841
Query: 294 LFFESVCGEVQRLRL 308
F S GE++ +RL
Sbjct: 842 ELF-STFGELKTVRL 855
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+ V ++ + EE+ LF G + DC + + R F F+ F EE A+AAL
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAAL 59
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 236
++YV D+ VTE+ L F T G V+ RIC D L +A+V F A+ AL +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
+ ++ +R++ S+ +L RS ++ N+DK + D K +
Sbjct: 71 MNFDIIKGKSIRLMWSQ------RDAYLRRS------GIGNVFIKNLDKSI---DNKTLY 115
Query: 297 E--SVCGEVQRLRLLGDYQHSTRIAFVEF 323
E S G++ +++ D Q S AFV F
Sbjct: 116 EHFSAFGKILSSKVMSDDQGSKGYAFVHF 144
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 162 RRMNCRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 217
R R +Q+D +RR+ V++ ++D+ + + + F G ++ C++ D
Sbjct: 69 RNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN 128
Query: 218 LR-FAFVEFTDEEGARAAL-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS 275
+ + FV F EE A ++ + G +L V V F+PR E E+E+
Sbjct: 129 SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGE 177
Query: 276 RT-----IYCTNIDKKVTQGDIKLFFE 297
+ +Y N + +K FFE
Sbjct: 178 KAKLFTNVYVKNFTEDFDDEKLKEFFE 204
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 236
++YV D+ Q V E L F + G V+ R+C D L +A+V F A AL +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 237 LAGTMLGFYPVRVLPSK 253
+ ++ P+R++ S+
Sbjct: 63 MNFDLVRNKPIRIMWSQ 79
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTD 227
N Q+E+ R+VYV ++D + T +Q+ F +CG V I D + +VEF +
Sbjct: 92 NTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVN 151
Query: 228 EEGARAALSLAGTMLGFYPVRVLPSKTAI 256
+E A++L + +++ P +T +
Sbjct: 152 KESIINAMALNDSFFNERQLKITPKRTNL 180
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFA 324
D+ E+ SR++Y N+D K T I +F+S CG V R+ +L D H +VEF
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFV 150
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF--AFVEFTDEEGARAALSLA 238
+ V+ + Q +T+ +L LF TCG + CRI D + F AFV+F E A+ A+
Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
+ VR K + A P E ++ +Y TN+ + +T +++ F
Sbjct: 164 NGIT----VRNKRLKVSYA------RPGGESIKDT---NLYVTNLPRTITDDELEKIFGK 210
Query: 299 VCGEVQRLRLLGDYQHSTR-IAFVEF 323
VQ+ L R +AFV F
Sbjct: 211 YGNIVQKNILRDKLTGRPRGVAFVRF 236
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-----R 209
NG + +R+ + + + +YV+++ + +T+++L +F G +V +
Sbjct: 164 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 223
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALS 236
+ G P V AFV F E A+ A+S
Sbjct: 224 LTGRPRGV---AFVRFNKREEAQEAIS 247
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEE 229
+Q + ++V++ ++D T E++ F CGQ+V I D + + FA++EF D
Sbjct: 48 EQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSS 107
Query: 230 GARAALSLAGTMLGFYPVRVLPSKTAI 256
AL + G++ P+ V +T I
Sbjct: 108 SIENALVMNGSLFRSRPIVVTAKRTNI 134
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDE 228
+++D+ ++YV ++D VTE L +F G V R+C D L +A+V F ++
Sbjct: 38 SKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQ 97
Query: 229 EGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288
AL L + P++ P + + +P R+ + IY N+D +
Sbjct: 98 ADGIRALE----ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAID 146
Query: 289 QGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEF 323
+ F S G++ ++ D + +S FV +
Sbjct: 147 NKALHDTF-SAFGQILSCKIATDEFGNSRGFGFVHY 181
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD-EEGARAALS 236
++YV D+D VT+ QL F G VV R+C D L + +V FT+ ++ ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L L P+RV+ S R R + I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 297 ESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
S V + S FV++A
Sbjct: 145 SSFGNIVSCKVAVDSSGQSKGYGFVQYA 172
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
R + +D +RR+ +++ ++D+ + + L F + G +V C++ D + + +
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGY 166
Query: 221 AFVEFTDEEGARAAL-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-- 277
FV++ +EE A+ A+ L G +L V V P FL R E + ++T
Sbjct: 167 GFVQYANEESAQKAIEKLNGMLLNDKQVYVGP-----------FLRRQERD-STANKTKF 214
Query: 278 --IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEF 323
+Y N+ + T D+K F G++ ++ D + ++ FV F
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGE-YGKITSAVVMKDGEGKSKGFGFVNF 262
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA-FVEF-TDEEGA 231
D+ +YV ++D +++E+L +F G V ++ DPN + + FV F T EE
Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEAT 372
Query: 232 RAALSLAGTMLGFYPVRV 249
A L+G M+ P+ V
Sbjct: 373 EAMSQLSGKMIESKPLYV 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,830,787
Number of Sequences: 539616
Number of extensions: 5526521
Number of successful extensions: 35959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 363
Number of HSP's that attempted gapping in prelim test: 29467
Number of HSP's gapped (non-prelim): 5241
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)