Query 019691
Match_columns 337
No_of_seqs 420 out of 1785
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.2E-27 9.1E-32 225.9 23.3 149 172-335 101-254 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.5E-27 1.4E-31 225.3 18.0 243 63-335 3-330 (352)
3 KOG0145 RNA-binding protein EL 99.9 2.3E-25 5.1E-30 198.5 15.3 247 59-335 37-339 (360)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.5E-25 1.8E-29 210.6 18.5 144 177-335 2-150 (352)
5 TIGR01628 PABP-1234 polyadenyl 99.9 8.4E-25 1.8E-29 223.6 17.8 218 87-335 13-238 (562)
6 TIGR01645 half-pint poly-U bin 99.9 1.7E-24 3.7E-29 218.9 19.3 155 177-335 106-265 (612)
7 TIGR01622 SF-CC1 splicing fact 99.9 5.7E-24 1.2E-28 212.0 21.7 159 174-335 85-247 (457)
8 TIGR01628 PABP-1234 polyadenyl 99.9 3E-24 6.4E-29 219.5 18.0 143 180-335 2-148 (562)
9 KOG0148 Apoptosis-promoting RN 99.9 2.3E-23 5E-28 186.7 13.4 151 178-335 62-219 (321)
10 KOG0144 RNA-binding protein CU 99.9 5.8E-23 1.3E-27 194.1 12.1 153 169-335 25-184 (510)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.4E-22 1.4E-26 198.8 20.2 156 176-335 273-455 (481)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-21 2.5E-26 196.9 19.0 150 177-335 1-153 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-21 2.9E-26 197.4 19.6 158 173-335 170-356 (509)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 1.8E-21 3.9E-26 196.6 18.3 140 175-334 55-200 (578)
15 KOG0123 Polyadenylate-binding 99.9 3.9E-22 8.5E-27 192.7 12.9 214 87-335 11-227 (369)
16 KOG0127 Nucleolar protein fibr 99.9 3E-21 6.4E-26 187.0 18.5 244 87-336 18-354 (678)
17 KOG0145 RNA-binding protein EL 99.9 1.1E-21 2.3E-26 175.1 12.1 146 175-335 38-188 (360)
18 KOG0131 Splicing factor 3b, su 99.9 8.7E-22 1.9E-26 167.6 9.9 146 177-336 8-159 (203)
19 TIGR01648 hnRNP-R-Q heterogene 99.8 2.9E-20 6.2E-25 187.9 18.8 222 61-335 56-288 (578)
20 KOG0117 Heterogeneous nuclear 99.8 4.1E-20 8.8E-25 175.7 16.8 144 170-333 75-225 (506)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.2E-19 2.5E-24 183.3 18.8 159 176-335 293-483 (509)
22 KOG0123 Polyadenylate-binding 99.8 5.9E-20 1.3E-24 177.6 14.5 132 179-335 2-134 (369)
23 TIGR01622 SF-CC1 splicing fact 99.8 2.5E-19 5.3E-24 178.7 18.8 234 87-335 102-429 (457)
24 KOG0117 Heterogeneous nuclear 99.8 8.5E-20 1.8E-24 173.5 12.1 206 89-335 98-312 (506)
25 KOG0124 Polypyrimidine tract-b 99.8 1.8E-19 3.8E-24 167.5 8.9 152 179-334 114-270 (544)
26 KOG0127 Nucleolar protein fibr 99.8 1.4E-18 3E-23 168.6 14.4 156 179-335 6-177 (678)
27 KOG0110 RNA-binding protein (R 99.8 4E-18 8.7E-23 170.0 17.8 149 181-335 518-674 (725)
28 KOG0109 RNA-binding protein LA 99.8 7.5E-19 1.6E-23 159.2 9.0 125 180-333 4-129 (346)
29 KOG0147 Transcriptional coacti 99.7 4.4E-18 9.6E-23 165.7 5.8 162 171-334 172-338 (549)
30 KOG0105 Alternative splicing f 99.7 9.1E-16 2E-20 131.2 14.1 150 177-334 5-168 (241)
31 KOG4205 RNA-binding protein mu 99.7 1E-16 2.2E-21 150.7 8.7 150 177-335 5-158 (311)
32 TIGR01645 half-pint poly-U bin 99.7 4.3E-15 9.4E-20 150.8 20.8 158 84-253 117-282 (612)
33 KOG0144 RNA-binding protein CU 99.7 2.4E-16 5.3E-21 149.5 9.8 152 87-253 47-204 (510)
34 KOG4211 Splicing factor hnRNP- 99.6 5.6E-15 1.2E-19 142.6 15.7 154 175-334 7-163 (510)
35 TIGR01659 sex-lethal sex-letha 99.6 1.1E-15 2.4E-20 147.0 10.7 165 61-254 105-274 (346)
36 KOG0146 RNA-binding protein ET 99.6 4.5E-15 9.8E-20 133.4 13.2 172 163-335 4-346 (371)
37 KOG4206 Spliceosomal protein s 99.6 2.5E-14 5.3E-19 126.4 14.7 153 178-335 9-202 (221)
38 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 123.0 11.4 78 177-254 33-113 (144)
39 KOG0148 Apoptosis-promoting RN 99.6 8.3E-15 1.8E-19 132.0 9.7 119 175-335 3-123 (321)
40 PF00076 RRM_1: RNA recognitio 99.5 8.2E-14 1.8E-18 102.1 9.1 68 181-248 1-70 (70)
41 KOG4212 RNA-binding protein hn 99.5 4.8E-13 1E-17 127.4 16.0 159 176-335 42-275 (608)
42 PLN03120 nucleic acid binding 99.5 2.8E-13 6E-18 123.6 10.9 78 177-255 3-80 (260)
43 KOG1457 RNA binding protein (c 99.5 2.1E-12 4.5E-17 113.7 14.5 158 175-335 31-267 (284)
44 KOG0121 Nuclear cap-binding pr 99.4 3.2E-13 6.8E-18 109.3 6.9 78 175-252 33-113 (153)
45 KOG1456 Heterogeneous nuclear 99.4 2.2E-11 4.8E-16 114.2 19.4 159 174-335 283-466 (494)
46 PF14259 RRM_6: RNA recognitio 99.4 1.2E-12 2.5E-17 96.6 8.9 68 181-248 1-70 (70)
47 COG0724 RNA-binding proteins ( 99.4 4.2E-12 9E-17 115.2 13.9 133 178-311 115-260 (306)
48 KOG1548 Transcription elongati 99.4 2.3E-11 5E-16 113.2 17.8 163 170-335 126-333 (382)
49 KOG0125 Ataxin 2-binding prote 99.4 2E-12 4.2E-17 119.5 9.5 79 175-253 93-172 (376)
50 PLN03121 nucleic acid binding 99.4 3.5E-12 7.6E-17 114.8 10.8 78 177-255 4-81 (243)
51 KOG0106 Alternative splicing f 99.4 1.1E-12 2.4E-17 116.8 6.8 145 179-336 2-153 (216)
52 KOG1190 Polypyrimidine tract-b 99.4 1.4E-11 3.1E-16 116.7 14.4 151 178-334 297-470 (492)
53 KOG0122 Translation initiation 99.3 2.7E-12 5.9E-17 114.4 8.7 78 177-254 188-268 (270)
54 KOG0107 Alternative splicing f 99.3 1.7E-12 3.8E-17 110.4 7.0 74 178-254 10-84 (195)
55 KOG0129 Predicted RNA-binding 99.3 1.9E-11 4.1E-16 119.1 14.9 162 172-336 253-433 (520)
56 KOG0110 RNA-binding protein (R 99.3 6.7E-12 1.4E-16 126.0 11.7 156 175-335 382-579 (725)
57 smart00362 RRM_2 RNA recogniti 99.3 1.1E-11 2.3E-16 89.9 9.4 71 180-250 1-72 (72)
58 PLN03213 repressor of silencin 99.3 2.3E-11 5E-16 117.6 9.6 77 176-254 8-87 (759)
59 KOG0147 Transcriptional coacti 99.2 5.3E-11 1.1E-15 116.7 11.4 151 181-335 281-509 (549)
60 KOG0114 Predicted RNA-binding 99.2 5.2E-11 1.1E-15 93.1 8.8 77 175-252 15-92 (124)
61 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.5E-15 84.8 9.6 72 180-251 1-74 (74)
62 KOG0149 Predicted RNA-binding 99.2 4.3E-11 9.4E-16 106.4 8.5 76 177-252 11-88 (247)
63 KOG4207 Predicted splicing fac 99.2 2.3E-11 5.1E-16 106.0 6.4 78 177-254 12-92 (256)
64 smart00360 RRM RNA recognition 99.2 1.1E-10 2.4E-15 84.1 8.4 68 183-250 1-71 (71)
65 PF00076 RRM_1: RNA recognitio 99.2 7.8E-11 1.7E-15 86.1 7.6 57 278-335 1-58 (70)
66 PLN03134 glycine-rich RNA-bind 99.2 7.2E-11 1.6E-15 100.1 8.4 61 274-335 33-95 (144)
67 KOG0130 RNA-binding protein RB 99.2 3.7E-11 8.1E-16 98.2 5.6 73 180-252 74-149 (170)
68 KOG0126 Predicted RNA-binding 99.1 6.3E-12 1.4E-16 107.5 -0.2 78 175-252 32-112 (219)
69 KOG0113 U1 small nuclear ribon 99.1 1.6E-10 3.5E-15 105.8 8.4 77 176-252 99-178 (335)
70 KOG0111 Cyclophilin-type pepti 99.1 5.6E-11 1.2E-15 104.5 4.1 81 175-255 7-90 (298)
71 KOG1365 RNA-binding protein Fu 99.1 1.9E-10 4.1E-15 108.3 7.6 157 179-335 162-343 (508)
72 PF14259 RRM_6: RNA recognitio 99.1 4.3E-10 9.3E-15 82.8 7.3 58 278-336 1-59 (70)
73 PF13893 RRM_5: RNA recognitio 99.1 6.3E-10 1.4E-14 78.6 7.2 55 195-252 1-56 (56)
74 KOG0108 mRNA cleavage and poly 99.0 4.7E-10 1E-14 110.2 7.6 75 179-253 19-96 (435)
75 PLN03120 nucleic acid binding 99.0 1.6E-09 3.6E-14 99.1 8.4 60 274-335 3-62 (260)
76 KOG0131 Splicing factor 3b, su 99.0 1E-09 2.2E-14 94.2 6.3 148 87-253 22-175 (203)
77 KOG0149 Predicted RNA-binding 98.9 1.4E-09 3.1E-14 96.8 6.7 60 274-334 11-72 (247)
78 KOG0124 Polypyrimidine tract-b 98.9 1.7E-08 3.8E-13 94.7 13.8 75 178-252 210-287 (544)
79 smart00362 RRM_2 RNA recogniti 98.9 4.6E-09 9.9E-14 75.8 7.9 58 277-335 1-58 (72)
80 smart00361 RRM_1 RNA recogniti 98.9 5.5E-09 1.2E-13 77.4 7.9 58 192-249 2-69 (70)
81 KOG0120 Splicing factor U2AF, 98.9 6.8E-09 1.5E-13 102.9 10.5 159 176-335 287-473 (500)
82 PLN03121 nucleic acid binding 98.9 5E-09 1.1E-13 94.5 8.3 61 274-336 4-64 (243)
83 KOG4211 Splicing factor hnRNP- 98.9 1.1E-08 2.5E-13 99.4 10.9 156 177-334 102-339 (510)
84 KOG4454 RNA binding protein (R 98.9 4.6E-10 1E-14 98.8 0.1 126 176-329 7-138 (267)
85 KOG4205 RNA-binding protein mu 98.9 1.5E-08 3.2E-13 95.8 10.2 154 80-252 12-173 (311)
86 KOG0125 Ataxin 2-binding prote 98.8 4.3E-09 9.2E-14 97.7 6.3 62 272-334 93-154 (376)
87 KOG0122 Translation initiation 98.8 5.4E-09 1.2E-13 93.5 6.7 60 274-334 188-249 (270)
88 KOG0132 RNA polymerase II C-te 98.8 1E-08 2.3E-13 104.1 8.4 75 175-253 418-493 (894)
89 KOG0121 Nuclear cap-binding pr 98.8 1.1E-08 2.5E-13 83.1 6.0 62 273-335 34-97 (153)
90 KOG1456 Heterogeneous nuclear 98.8 1.2E-07 2.5E-12 89.5 13.5 146 175-335 28-178 (494)
91 KOG0153 Predicted RNA-binding 98.8 2E-08 4.4E-13 93.8 7.9 79 172-254 222-302 (377)
92 KOG0146 RNA-binding protein ET 98.7 1.1E-08 2.4E-13 92.5 5.3 82 171-252 278-362 (371)
93 KOG0109 RNA-binding protein LA 98.7 1.5E-08 3.2E-13 92.7 5.1 74 175-254 75-149 (346)
94 KOG0415 Predicted peptidyl pro 98.7 2.4E-08 5.3E-13 93.5 6.4 175 74-253 115-317 (479)
95 smart00360 RRM RNA recognition 98.7 5.5E-08 1.2E-12 69.7 7.0 55 280-335 1-57 (71)
96 KOG0114 Predicted RNA-binding 98.7 5.1E-08 1.1E-12 76.5 6.8 60 273-334 16-75 (124)
97 cd00590 RRM RRM (RNA recogniti 98.7 9.8E-08 2.1E-12 69.1 8.1 58 277-335 1-59 (74)
98 KOG1190 Polypyrimidine tract-b 98.7 5.3E-08 1.1E-12 92.8 8.2 152 176-334 26-206 (492)
99 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.1E-07 2.4E-12 93.8 10.6 83 175-257 402-487 (940)
100 KOG0113 U1 small nuclear ribon 98.7 6.3E-08 1.4E-12 89.0 7.6 63 273-336 99-163 (335)
101 PLN03213 repressor of silencin 98.6 7.6E-08 1.6E-12 93.6 8.1 59 273-334 8-68 (759)
102 KOG0107 Alternative splicing f 98.6 5.5E-08 1.2E-12 83.1 5.9 58 274-335 9-66 (195)
103 KOG0120 Splicing factor U2AF, 98.6 2.6E-07 5.5E-12 91.8 11.2 154 176-334 173-349 (500)
104 COG0724 RNA-binding proteins ( 98.6 1.5E-07 3.2E-12 85.2 7.9 60 275-335 115-176 (306)
105 KOG1365 RNA-binding protein Fu 98.5 1.2E-06 2.7E-11 83.0 12.1 158 177-334 59-224 (508)
106 KOG4212 RNA-binding protein hn 98.5 1.9E-07 4E-12 89.8 6.7 61 275-335 44-105 (608)
107 KOG0130 RNA-binding protein RB 98.5 2E-07 4.4E-12 76.5 5.8 63 272-335 69-133 (170)
108 KOG4207 Predicted splicing fac 98.5 2.5E-07 5.5E-12 81.1 5.6 61 274-335 12-74 (256)
109 KOG0105 Alternative splicing f 98.5 2.2E-07 4.9E-12 80.1 5.2 59 274-334 5-63 (241)
110 KOG4208 Nucleolar RNA-binding 98.4 6.4E-07 1.4E-11 78.6 7.6 77 175-251 46-126 (214)
111 KOG0533 RRM motif-containing p 98.4 1.1E-06 2.4E-11 80.2 7.8 78 175-252 80-159 (243)
112 KOG4676 Splicing factor, argin 98.4 2.4E-07 5.3E-12 87.9 3.6 154 179-335 8-208 (479)
113 KOG0112 Large RNA-binding prot 98.4 2.6E-07 5.6E-12 95.5 3.9 140 174-334 368-509 (975)
114 KOG0151 Predicted splicing reg 98.4 1.6E-06 3.5E-11 87.7 9.3 87 175-261 171-263 (877)
115 KOG0128 RNA-binding protein SA 98.4 4.1E-08 8.9E-13 100.9 -2.0 125 178-333 667-794 (881)
116 KOG4660 Protein Mei2, essentia 98.3 4.8E-07 1E-11 89.4 5.1 73 173-248 70-143 (549)
117 KOG0116 RasGAP SH3 binding pro 98.3 8.1E-07 1.8E-11 87.1 6.6 78 177-254 287-366 (419)
118 KOG4209 Splicing factor RNPS1, 98.3 6.6E-07 1.4E-11 81.5 5.4 84 173-256 96-181 (231)
119 KOG0226 RNA-binding proteins [ 98.3 1.4E-06 2.9E-11 78.7 6.1 79 174-252 186-267 (290)
120 KOG0111 Cyclophilin-type pepti 98.3 3.8E-07 8.2E-12 80.6 2.5 60 274-334 9-70 (298)
121 KOG0126 Predicted RNA-binding 98.3 8.4E-08 1.8E-12 82.5 -1.6 59 274-333 34-94 (219)
122 KOG4210 Nuclear localization s 98.3 1.1E-06 2.5E-11 82.5 5.3 154 176-334 86-245 (285)
123 smart00361 RRM_1 RNA recogniti 98.2 3.1E-06 6.6E-11 62.6 6.3 46 289-335 2-56 (70)
124 KOG0108 mRNA cleavage and poly 98.2 2.5E-06 5.4E-11 84.2 6.3 58 276-334 19-78 (435)
125 PF04059 RRM_2: RNA recognitio 98.2 1.3E-05 2.7E-10 63.2 8.6 76 178-253 1-85 (97)
126 PF13893 RRM_5: RNA recognitio 98.1 1E-05 2.2E-10 56.9 5.5 40 292-335 1-40 (56)
127 KOG0226 RNA-binding proteins [ 98.0 7.5E-06 1.6E-10 74.0 5.2 146 180-334 98-250 (290)
128 KOG4307 RNA binding protein RB 98.0 0.00014 3E-09 74.0 14.1 73 178-250 867-942 (944)
129 KOG0415 Predicted peptidyl pro 98.0 8.7E-06 1.9E-10 76.6 5.1 60 273-333 237-298 (479)
130 KOG0153 Predicted RNA-binding 98.0 1.5E-05 3.2E-10 75.0 6.3 60 273-337 226-285 (377)
131 KOG4208 Nucleolar RNA-binding 98.0 2.2E-05 4.8E-10 69.0 7.0 62 273-334 47-110 (214)
132 KOG4307 RNA binding protein RB 97.9 2E-05 4.2E-10 79.9 6.9 158 176-335 309-495 (944)
133 KOG0116 RasGAP SH3 binding pro 97.9 1.2E-05 2.7E-10 78.9 5.5 61 275-336 288-350 (419)
134 PF11608 Limkain-b1: Limkain b 97.9 4.7E-05 1E-09 57.8 6.6 67 179-253 3-75 (90)
135 KOG0132 RNA polymerase II C-te 97.8 3.5E-05 7.5E-10 79.1 6.6 59 272-335 418-476 (894)
136 KOG4206 Spliceosomal protein s 97.7 7.4E-05 1.6E-09 66.6 6.8 58 276-335 10-71 (221)
137 PF08777 RRM_3: RNA binding mo 97.7 9.2E-05 2E-09 59.3 5.8 55 276-335 2-56 (105)
138 PF04059 RRM_2: RNA recognitio 97.7 0.00024 5.1E-09 56.0 7.8 59 276-334 2-63 (97)
139 KOG4660 Protein Mei2, essentia 97.6 0.00011 2.3E-09 73.1 6.7 66 266-335 66-131 (549)
140 KOG0533 RRM motif-containing p 97.6 0.00018 4E-09 65.8 6.7 61 274-335 82-143 (243)
141 KOG0128 RNA-binding protein SA 97.5 7.7E-06 1.7E-10 84.5 -2.8 155 176-335 569-728 (881)
142 PF08777 RRM_3: RNA binding mo 97.5 0.00037 8E-09 55.9 6.8 53 180-236 3-55 (105)
143 KOG1995 Conserved Zn-finger pr 97.5 0.00053 1.2E-08 65.0 8.7 79 175-253 63-152 (351)
144 KOG4661 Hsp27-ERE-TATA-binding 97.4 0.00033 7.1E-09 69.8 6.7 63 272-335 402-466 (940)
145 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00049 1.1E-08 48.1 5.5 52 179-235 2-53 (53)
146 KOG2193 IGF-II mRNA-binding pr 97.4 3E-05 6.6E-10 74.6 -0.9 132 180-334 3-137 (584)
147 KOG1457 RNA binding protein (c 97.3 0.00025 5.3E-09 63.3 4.4 62 179-242 211-273 (284)
148 KOG4209 Splicing factor RNPS1, 97.3 0.00028 6E-09 64.4 4.3 63 272-335 98-162 (231)
149 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0026 5.7E-08 50.4 7.7 75 177-252 5-89 (100)
150 KOG4454 RNA binding protein (R 97.1 0.00033 7.1E-09 62.3 2.7 60 274-335 8-68 (267)
151 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0017 3.7E-08 45.3 5.4 52 276-333 2-53 (53)
152 KOG0106 Alternative splicing f 97.0 0.00051 1.1E-08 61.6 2.9 71 175-251 96-167 (216)
153 COG5175 MOT2 Transcriptional r 96.9 0.0019 4.2E-08 60.8 6.2 74 180-253 116-201 (480)
154 KOG0115 RNA-binding protein p5 96.8 0.0019 4.2E-08 58.7 5.3 85 230-336 6-92 (275)
155 KOG1855 Predicted RNA-binding 96.8 0.0018 3.8E-08 62.8 5.3 69 170-238 223-306 (484)
156 KOG1548 Transcription elongati 96.8 0.0032 6.9E-08 59.6 6.4 61 274-335 133-202 (382)
157 KOG4210 Nuclear localization s 96.7 0.0015 3.2E-08 61.6 3.7 77 177-253 183-262 (285)
158 KOG0129 Predicted RNA-binding 96.6 0.007 1.5E-07 60.1 8.0 62 176-237 368-432 (520)
159 KOG0151 Predicted splicing reg 96.5 0.004 8.6E-08 63.8 5.6 63 272-335 171-238 (877)
160 KOG3152 TBP-binding protein, a 96.2 0.0028 6.1E-08 57.7 2.1 69 178-246 74-157 (278)
161 PF08952 DUF1866: Domain of un 96.1 0.019 4.1E-07 48.4 6.7 70 177-252 26-104 (146)
162 KOG2314 Translation initiation 96.0 0.024 5.2E-07 56.9 7.8 76 176-251 56-140 (698)
163 PF07145 PAM2: Ataxin-2 C-term 96.0 0.002 4.4E-08 34.5 0.1 17 94-110 2-18 (18)
164 KOG1855 Predicted RNA-binding 95.9 0.0087 1.9E-07 58.2 4.0 64 272-336 228-306 (484)
165 PF08675 RNA_bind: RNA binding 95.7 0.06 1.3E-06 41.0 7.0 55 177-238 8-63 (87)
166 PF10309 DUF2414: Protein of u 95.6 0.072 1.6E-06 38.4 7.0 55 275-335 5-61 (62)
167 KOG2202 U2 snRNP splicing fact 95.5 0.0064 1.4E-07 55.4 1.6 59 194-252 84-145 (260)
168 KOG4849 mRNA cleavage factor I 95.3 0.018 4E-07 54.6 3.8 73 178-250 80-157 (498)
169 KOG0112 Large RNA-binding prot 95.1 0.031 6.7E-07 58.9 5.3 76 176-255 453-531 (975)
170 KOG2135 Proteins containing th 94.9 0.017 3.8E-07 56.8 2.7 73 177-253 371-444 (526)
171 KOG1996 mRNA splicing factor [ 94.8 0.074 1.6E-06 49.5 6.4 59 193-251 301-363 (378)
172 PF11608 Limkain-b1: Limkain b 94.3 0.18 3.8E-06 38.6 6.3 51 276-334 3-57 (90)
173 PF08675 RNA_bind: RNA binding 94.3 0.16 3.6E-06 38.7 6.1 52 276-335 10-61 (87)
174 KOG1995 Conserved Zn-finger pr 93.9 0.078 1.7E-06 50.6 4.5 61 274-335 65-135 (351)
175 PF07292 NID: Nmi/IFP 35 domai 93.8 0.062 1.3E-06 41.5 3.1 72 221-297 1-74 (88)
176 KOG2314 Translation initiation 93.6 0.11 2.4E-06 52.4 5.2 61 274-335 57-124 (698)
177 PF10309 DUF2414: Protein of u 93.6 0.47 1E-05 34.2 7.0 52 179-236 6-60 (62)
178 PF05172 Nup35_RRM: Nup53/35/4 93.4 0.23 5.1E-06 39.3 5.8 58 275-334 6-72 (100)
179 KOG2416 Acinus (induces apopto 93.4 0.057 1.2E-06 54.7 2.7 72 176-251 442-518 (718)
180 KOG4676 Splicing factor, argin 93.3 0.081 1.7E-06 51.1 3.6 60 276-336 8-72 (479)
181 PF07576 BRAP2: BRCA1-associat 93.1 0.89 1.9E-05 36.7 8.8 68 177-244 11-81 (110)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 92.5 0.19 4.2E-06 44.0 4.6 69 177-245 6-83 (176)
183 KOG0804 Cytoplasmic Zn-finger 92.0 0.5 1.1E-05 46.6 7.2 70 175-244 71-142 (493)
184 KOG2591 c-Mpl binding protein, 91.5 0.95 2.1E-05 45.8 8.6 57 274-335 174-231 (684)
185 KOG4285 Mitotic phosphoprotein 91.3 0.91 2E-05 42.7 7.7 67 180-251 199-266 (350)
186 KOG2591 c-Mpl binding protein, 91.2 0.54 1.2E-05 47.5 6.5 69 177-250 174-247 (684)
187 KOG0115 RNA-binding protein p5 91.2 0.22 4.9E-06 45.6 3.5 73 179-251 32-110 (275)
188 KOG2068 MOT2 transcription fac 91.0 0.071 1.5E-06 50.5 0.2 75 178-252 77-160 (327)
189 KOG2253 U1 snRNP complex, subu 90.6 0.55 1.2E-05 48.3 6.1 108 177-297 39-157 (668)
190 PF15023 DUF4523: Protein of u 90.5 1.1 2.5E-05 37.6 6.9 71 175-251 83-158 (166)
191 COG5175 MOT2 Transcriptional r 90.5 0.47 1E-05 45.1 5.1 61 274-335 113-184 (480)
192 KOG4849 mRNA cleavage factor I 90.2 0.24 5.3E-06 47.2 3.0 61 274-335 79-143 (498)
193 KOG2416 Acinus (induces apopto 89.5 0.25 5.4E-06 50.2 2.7 61 271-335 440-500 (718)
194 PF11767 SET_assoc: Histone ly 88.9 2.2 4.8E-05 31.1 6.6 54 189-249 11-65 (66)
195 PF15023 DUF4523: Protein of u 88.0 0.83 1.8E-05 38.5 4.3 58 273-336 84-145 (166)
196 PF10567 Nab6_mRNP_bdg: RNA-re 87.6 23 0.00051 33.4 14.0 161 173-335 10-210 (309)
197 PF07576 BRAP2: BRCA1-associat 87.6 3.2 6.8E-05 33.5 7.4 57 276-332 13-70 (110)
198 KOG3152 TBP-binding protein, a 86.9 0.36 7.9E-06 44.2 1.7 60 274-334 73-146 (278)
199 PF04847 Calcipressin: Calcipr 86.8 1.9 4E-05 38.1 6.1 59 191-253 8-69 (184)
200 KOG1996 mRNA splicing factor [ 83.7 2.5 5.4E-05 39.7 5.6 45 289-334 300-347 (378)
201 PF14111 DUF4283: Domain of un 82.3 2.4 5.1E-05 35.4 4.7 112 189-312 28-141 (153)
202 KOG0804 Cytoplasmic Zn-finger 81.1 3.5 7.5E-05 40.9 5.8 58 275-332 74-131 (493)
203 KOG4574 RNA-binding protein (c 79.5 1.5 3.2E-05 46.6 2.8 72 180-255 300-374 (1007)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 78.2 2.8 6.1E-05 36.6 3.9 58 274-331 6-70 (176)
205 KOG2253 U1 snRNP complex, subu 76.5 2.2 4.8E-05 44.0 3.1 54 274-335 39-92 (668)
206 TIGR03636 L23_arch archaeal ri 76.2 12 0.00025 28.2 6.2 55 277-332 15-70 (77)
207 PF03880 DbpA: DbpA RNA bindin 76.1 9.8 0.00021 28.0 5.8 57 188-251 11-73 (74)
208 KOG4483 Uncharacterized conser 75.8 9 0.0002 37.5 6.8 63 175-242 388-451 (528)
209 PRK14548 50S ribosomal protein 74.3 14 0.00031 28.2 6.4 56 277-333 22-78 (84)
210 PF03468 XS: XS domain; Inter 73.8 4.7 0.0001 32.8 3.8 58 180-238 10-77 (116)
211 PF08952 DUF1866: Domain of un 72.4 7.9 0.00017 32.8 4.9 39 291-336 52-90 (146)
212 KOG2202 U2 snRNP splicing fact 65.5 2.6 5.6E-05 38.8 0.7 45 290-335 83-129 (260)
213 KOG4410 5-formyltetrahydrofola 65.3 36 0.00079 32.0 8.0 48 178-229 330-378 (396)
214 KOG4285 Mitotic phosphoprotein 63.3 17 0.00038 34.4 5.6 55 275-335 197-251 (350)
215 KOG2068 MOT2 transcription fac 61.6 6.9 0.00015 37.4 2.7 60 275-335 77-144 (327)
216 KOG2318 Uncharacterized conser 58.1 42 0.00091 34.6 7.7 72 175-246 171-297 (650)
217 KOG4574 RNA-binding protein (c 55.4 5.9 0.00013 42.2 1.3 50 281-335 304-353 (1007)
218 KOG4483 Uncharacterized conser 51.1 28 0.00062 34.2 5.0 57 274-335 390-446 (528)
219 TIGR02542 B_forsyth_147 Bacter 50.5 67 0.0014 26.2 6.2 51 283-333 82-136 (145)
220 PTZ00191 60S ribosomal protein 43.5 88 0.0019 26.5 6.3 54 277-331 83-137 (145)
221 PF03468 XS: XS domain; Inter 42.3 27 0.00058 28.4 3.0 50 276-327 9-67 (116)
222 PF07292 NID: Nmi/IFP 35 domai 36.8 19 0.00042 27.8 1.3 25 175-199 49-73 (88)
223 PRK05738 rplW 50S ribosomal pr 35.3 76 0.0016 24.6 4.4 52 276-327 20-84 (92)
224 KOG2193 IGF-II mRNA-binding pr 33.9 2.5 5.4E-05 41.6 -5.0 73 177-251 79-153 (584)
225 KOG2318 Uncharacterized conser 33.8 1.1E+02 0.0023 31.8 6.2 65 272-336 171-288 (650)
226 CHL00030 rpl23 ribosomal prote 31.5 85 0.0018 24.5 4.1 51 277-327 20-83 (93)
227 PF07045 DUF1330: Protein of u 29.8 2E+02 0.0044 20.3 6.1 44 291-334 10-57 (65)
228 KOG4410 5-formyltetrahydrofola 28.3 89 0.0019 29.5 4.3 48 274-326 329-377 (396)
229 PF14893 PNMA: PNMA 28.0 70 0.0015 30.9 3.7 52 274-325 17-71 (331)
230 CHL00123 rps6 ribosomal protei 27.7 2.4E+02 0.0051 21.9 6.1 52 284-335 15-81 (97)
231 PF14893 PNMA: PNMA 26.8 51 0.0011 31.9 2.6 51 177-227 17-71 (331)
232 KOG4213 RNA-binding protein La 26.0 27 0.00059 30.6 0.5 75 170-249 103-181 (205)
233 PF11767 SET_assoc: Histone ly 25.8 1.8E+02 0.0039 21.1 4.7 43 286-336 11-53 (66)
234 PF10567 Nab6_mRNP_bdg: RNA-re 25.6 1.1E+02 0.0025 28.9 4.5 56 274-330 14-78 (309)
235 PRK12280 rplW 50S ribosomal pr 23.9 1.3E+02 0.0028 25.9 4.2 35 277-311 23-58 (158)
236 PF08734 GYD: GYD domain; Int 22.7 3.5E+02 0.0076 20.6 6.2 43 289-333 22-64 (91)
237 PF02714 DUF221: Domain of unk 22.2 1.3E+02 0.0029 28.3 4.5 16 221-236 1-16 (325)
238 COG0089 RplW Ribosomal protein 22.0 2E+02 0.0044 22.4 4.6 39 276-314 21-60 (94)
239 KOG4008 rRNA processing protei 20.3 79 0.0017 29.0 2.3 34 175-208 37-70 (261)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=4.2e-27 Score=225.90 Aligned_cols=149 Identities=23% Similarity=0.388 Sum_probs=132.4
Q ss_pred ccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 172 ~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.|+.+ ++|||||+|.++++|.+||+ |++..+.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 344567889999999999999999999999999999999998765 68999999999999999997 999999999999
Q ss_pred EccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCh
Q 019691 249 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMV 326 (337)
Q Consensus 249 V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~ 326 (337)
|.+++... .....++|||.|||..+|+++|+++|++| |.|..++|+++. ++++|||||+|.+.
T Consensus 181 V~~a~p~~--------------~~~~~~~lfV~nLp~~vtee~L~~~F~~f-G~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 181 VSYARPGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGKY-GQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred eecccccc--------------cccccceeEEeCCCCcccHHHHHHHHHhc-CCEEEEEEeecCCCCccceEEEEEECCH
Confidence 99864211 01234689999999999999999999997 999999999884 67899999999999
Q ss_pred HHHHHHHHh
Q 019691 327 SEPFSWHAC 335 (337)
Q Consensus 327 e~A~~Ale~ 335 (337)
++|.+||+.
T Consensus 246 e~A~~Ai~~ 254 (346)
T TIGR01659 246 EEAQEAISA 254 (346)
T ss_pred HHHHHHHHH
Confidence 999999984
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.5e-27 Score=225.30 Aligned_cols=243 Identities=17% Similarity=0.262 Sum_probs=169.5
Q ss_pred CceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCC
Q 019691 63 GGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTA 142 (337)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 142 (337)
.+++.|..++... +..+|.++|++++|+..+.+..+.....+.+|+-+.|.... ....+
T Consensus 3 ~~~l~V~nLp~~~-----------~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~-----~A~~A----- 61 (352)
T TIGR01661 3 KTNLIVNYLPQTM-----------TQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPE-----DAEKA----- 61 (352)
T ss_pred CcEEEEeCCCCCC-----------CHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHH-----HHHHH-----
Confidence 4567776677665 78999999999999999999988766666655433220000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceE
Q 019691 143 NTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRF 220 (337)
Q Consensus 143 ~~~g~~~~~r~~~~~~~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~ 220 (337)
-...++..-+.+++..............++|||+|||..+++++|+++|..||.|..++++.+..+ ++||
T Consensus 62 --------i~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~ 133 (352)
T TIGR01661 62 --------VNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGV 133 (352)
T ss_pred --------HhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcE
Confidence 000111111111222211222222335678999999999999999999999999999999887643 6899
Q ss_pred EEEEEcCHHHHHHHHH-hCCeEecc--cceEEccCCCCCCCCCC------------C-----------------------
Q 019691 221 AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTAIAPVNP------------T----------------------- 262 (337)
Q Consensus 221 aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~sk~~~~~~~~------------~----------------------- 262 (337)
|||+|.+.++|+.|++ |+|..+.+ .+|.|.++......... .
T Consensus 134 ~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (352)
T TIGR01661 134 GFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAA 213 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCccc
Confidence 9999999999999997 99998877 56888776432200000 0
Q ss_pred -C-----------------------------CCCCccc-------------cccccceeeEeCCCCCCCHHHHHHHHhhc
Q 019691 263 -F-----------------------------LPRSEDE-------------REMCSRTIYCTNIDKKVTQGDIKLFFESV 299 (337)
Q Consensus 263 -~-----------------------------~p~~~~~-------------~~~~~~~l~V~NLp~~~tee~L~~~F~~~ 299 (337)
+ .+..... ......+|||+|||..+++++|+++|++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f 293 (352)
T TIGR01661 214 RFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF 293 (352)
T ss_pred ccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC
Confidence 0 0000000 01123369999999999999999999997
Q ss_pred CCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 300 CGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 300 ~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
|.|.+++|++|. +.++|||||+|.+.++|.+||+.
T Consensus 294 -G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 294 -GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred -CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 999999999884 77999999999999999999974
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=198.49 Aligned_cols=247 Identities=17% Similarity=0.273 Sum_probs=181.6
Q ss_pred CCCCCceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCC
Q 019691 59 AGAGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHT 138 (337)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 138 (337)
.+...+|++|||+++.| ++.+|..||+.++.+.++-+-+++.+..+++ ||+.+..-...
T Consensus 37 t~~skTNLIvNYLPQ~M-----------TqdE~rSLF~SiGeiEScKLvRDKitGqSLG----------YGFVNYv~p~D 95 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNM-----------TQDELRSLFGSIGEIESCKLVRDKITGQSLG----------YGFVNYVRPKD 95 (360)
T ss_pred cCcccceeeeeeccccc-----------CHHHHHHHhhcccceeeeeeeeccccccccc----------cceeeecChHH
Confidence 36778999999999999 9999999999999999999999998888884 44443322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--
Q 019691 139 DGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-- 216 (337)
Q Consensus 139 ~~~~~~~g~~~~~r~~~~~~~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-- 216 (337)
-. ..-.--+|.+--.+.+.....++..+......|||++||..+|..+|+.+|+.||.|..-+|+.|..+
T Consensus 96 Ae--------~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~ 167 (360)
T KOG0145|consen 96 AE--------KAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL 167 (360)
T ss_pred HH--------HHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce
Confidence 00 00000111111111111112222333445678999999999999999999999999988888888765
Q ss_pred CceEEEEEEcCHHHHHHHHH-hCCeEecc--cceEEccCCCCCCCCC-----C---------------------------
Q 019691 217 VLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTAIAPVN-----P--------------------------- 261 (337)
Q Consensus 217 ~kg~aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~sk~~~~~~~-----~--------------------------- 261 (337)
++|.+||.|...++|+.||. |||..-.| .+|.|.++..+..... +
T Consensus 168 srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~ 247 (360)
T KOG0145|consen 168 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLN 247 (360)
T ss_pred ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccc
Confidence 79999999999999999998 99998776 5789888653311000 0
Q ss_pred ------CCCCCCcc-----------ccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEE
Q 019691 262 ------TFLPRSED-----------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVE 322 (337)
Q Consensus 262 ------~~~p~~~~-----------~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVe 322 (337)
.|+|...+ ......++|||.||.++.+|.-|+++|.+| |.|..|++++|. .+++|||||.
T Consensus 248 ~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF-GAv~nVKvirD~ttnkCKGfgFVt 326 (360)
T KOG0145|consen 248 PHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF-GAVTNVKVIRDFTTNKCKGFGFVT 326 (360)
T ss_pred hhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc-cceeeEEEEecCCcccccceeEEE
Confidence 01111100 012346899999999999999999999998 999999999994 6799999999
Q ss_pred eCChHHHHHHHHh
Q 019691 323 FAMVSEPFSWHAC 335 (337)
Q Consensus 323 F~~~e~A~~Ale~ 335 (337)
+.+.++|..||.+
T Consensus 327 MtNYdEAamAi~s 339 (360)
T KOG0145|consen 327 MTNYDEAAMAIAS 339 (360)
T ss_pred ecchHHHHHHHHH
Confidence 9999999998854
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=8.5e-25 Score=210.59 Aligned_cols=144 Identities=22% Similarity=0.412 Sum_probs=128.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...+|||+|||.++++++|+++|+.||+|.+|+|++++.+ ++|||||+|.+.++|.+||+ |+|..+.|++|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3579999999999999999999999999999999998764 78999999999999999997 99999999999999864
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~ 331 (337)
... ......+|||+|||..+++++|+.+|++| |.|..+.++.+. +.++|||||+|.+.++|.+
T Consensus 82 ~~~--------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSS--------------DSIKGANLYVSGLPKTMTQHELESIFSPF-GQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred ccc--------------cccccceEEECCccccCCHHHHHHHHhcc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 211 01234789999999999999999999997 999999998874 5689999999999999999
Q ss_pred HHHh
Q 019691 332 WHAC 335 (337)
Q Consensus 332 Ale~ 335 (337)
||+.
T Consensus 147 ai~~ 150 (352)
T TIGR01661 147 AIKT 150 (352)
T ss_pred HHHH
Confidence 9973
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=8.4e-25 Score=223.58 Aligned_cols=218 Identities=21% Similarity=0.273 Sum_probs=163.4
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGY-SQGKRRMN 165 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~-~~G~r~~~ 165 (337)
+..+|.++|++++++..+.|+.+..+..+.+++.+.|.... ....+ -...++. -.|+ .
T Consensus 13 te~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~-----~A~~A-------------l~~ln~~~i~gk---~ 71 (562)
T TIGR01628 13 TEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPA-----DAERA-------------LETMNFKRLGGK---P 71 (562)
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHH-----HHHHH-------------HHHhCCCEECCe---e
Confidence 66899999999999999999999887777766533331110 00000 0000000 0111 1
Q ss_pred CCCCccccC----CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCC
Q 019691 166 CRTSNAQQD----EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAG 239 (337)
Q Consensus 166 ~r~~~~~~~----~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g 239 (337)
.+..|..++ .....+|||+|||.++++++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|++ ++|
T Consensus 72 i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 72 IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 112222221 123457999999999999999999999999999999988765 79999999999999999997 999
Q ss_pred eEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceE
Q 019691 240 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRI 318 (337)
Q Consensus 240 ~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~ 318 (337)
..+.++.|.|.+........ .......++|||+|||.++|+++|+++|+.| |.|.++.+.++. ++++||
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f-G~i~~~~i~~~~~g~~~G~ 221 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF-GEITSAAVMKDGSGRSRGF 221 (562)
T ss_pred cEecCceEEEeccccccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHhc-CCEEEEEEEECCCCCcccE
Confidence 99999999997643211100 1112345789999999999999999999997 999999999874 678999
Q ss_pred EEEEeCChHHHHHHHHh
Q 019691 319 AFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 319 aFVeF~~~e~A~~Ale~ 335 (337)
|||+|.+.++|.+|++.
T Consensus 222 afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 222 AFVNFEKHEDAAKAVEE 238 (562)
T ss_pred EEEEECCHHHHHHHHHH
Confidence 99999999999999974
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.7e-24 Score=218.91 Aligned_cols=155 Identities=25% Similarity=0.375 Sum_probs=129.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++++++|+++|..||.|.+|+++.|+.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4578999999999999999999999999999999998765 79999999999999999997 99999999999998643
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~ 331 (337)
.... ..+ ..... .......++|||+|||+.+++++|+++|+.| |.|.+++|.++. ++++|||||+|.+.++|.+
T Consensus 186 ~~p~-a~~-~~~~~-~~~~~~~~rLfVgnLp~~vteedLk~lFs~F-G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 186 NMPQ-AQP-IIDMV-QEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccc-ccc-ccccc-cccccccceEEeecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 2110 000 00000 0111245799999999999999999999997 999999999984 5689999999999999999
Q ss_pred HHHh
Q 019691 332 WHAC 335 (337)
Q Consensus 332 Ale~ 335 (337)
||+.
T Consensus 262 AI~a 265 (612)
T TIGR01645 262 AIAS 265 (612)
T ss_pred HHHH
Confidence 9974
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=5.7e-24 Score=212.02 Aligned_cols=159 Identities=26% Similarity=0.332 Sum_probs=132.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEcc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~ 251 (337)
.+...++|||+|||..+++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+||.|+|..+.|++|.|.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 3456789999999999999999999999999999999998765 68999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A 329 (337)
+.......... .... .......++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~-~~~~-~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKA-ATHQ-PGDIPNFLKLYVGNLHFNITEQELRQIFEPF-GDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhc-cccc-CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 64322111000 0000 0001236899999999999999999999997 999999999875 47899999999999999
Q ss_pred HHHHHh
Q 019691 330 FSWHAC 335 (337)
Q Consensus 330 ~~Ale~ 335 (337)
.+||+.
T Consensus 242 ~~A~~~ 247 (457)
T TIGR01622 242 KEALEV 247 (457)
T ss_pred HHHHHh
Confidence 999974
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=3e-24 Score=219.54 Aligned_cols=143 Identities=27% Similarity=0.415 Sum_probs=128.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~ 256 (337)
+|||+|||+++|+++|+++|+.||.|.+|+|++|..+ ++|||||+|.+.++|++||+ +++..+.|++|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~- 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD- 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc-
Confidence 7999999999999999999999999999999999874 78999999999999999997 9999999999999996421
Q ss_pred CCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 257 ~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+..+.....+|||+|||.++++++|+++|++| |.|..|++..+. ++++|||||+|.+.++|.+|++.
T Consensus 81 -----------~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~-G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ 148 (562)
T TIGR01628 81 -----------PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKF-GNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQK 148 (562)
T ss_pred -----------ccccccCCCceEEcCCCccCCHHHHHHHHHhc-CCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHH
Confidence 12222345789999999999999999999997 999999998874 67899999999999999999963
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.3e-23 Score=186.74 Aligned_cols=151 Identities=24% Similarity=0.381 Sum_probs=129.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
--.|||+.|.+.++-++|++.|..||+|.++++++|..+ +|||+||.|-+.++|+.||. |+|..|++|.||..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 346999999999999999999999999999999999987 79999999999999999998 999999999999999743
Q ss_pred CCCCCCCCCCCCCc----cccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHH
Q 019691 255 AIAPVNPTFLPRSE----DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPF 330 (337)
Q Consensus 255 ~~~~~~~~~~p~~~----~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~ 330 (337)
.....+. .+..- .......++|||+||+..+||++|++.|++| |.|..|+++++.+ ||||.|++.|+|.
T Consensus 142 Kp~e~n~--~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f-G~I~EVRvFk~qG----YaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNG--KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF-GPIQEVRVFKDQG----YAFVRFETKEAAA 214 (321)
T ss_pred CccccCC--CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC-CcceEEEEecccc----eEEEEecchhhHH
Confidence 2211110 00000 1113456899999999999999999999998 9999999999977 9999999999999
Q ss_pred HHHHh
Q 019691 331 SWHAC 335 (337)
Q Consensus 331 ~Ale~ 335 (337)
.||..
T Consensus 215 hAIv~ 219 (321)
T KOG0148|consen 215 HAIVQ 219 (321)
T ss_pred HHHHH
Confidence 99863
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.8e-23 Score=194.13 Aligned_cols=153 Identities=21% Similarity=0.321 Sum_probs=132.2
Q ss_pred CccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCe-Eecc
Q 019691 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGT-MLGF 244 (337)
Q Consensus 169 ~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~-~l~g 244 (337)
..++..+.+.-.+||+.||..++|.||+++|++||.|.+|.|++|+.+ ++|+|||.|.+.++|.+|+. |+.. .|-|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 344455667778999999999999999999999999999999999977 79999999999999999997 7764 4544
Q ss_pred --cceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEE
Q 019691 245 --YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFV 321 (337)
Q Consensus 245 --~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFV 321 (337)
.+|.|.++... .++-...++|||+-|++.+||.+|+++|.+| |.|+.|.|++|. +.+||+|||
T Consensus 105 ~~~pvqvk~Ad~E-------------~er~~~e~KLFvg~lsK~~te~evr~iFs~f-G~Ied~~ilrd~~~~sRGcaFV 170 (510)
T KOG0144|consen 105 MHHPVQVKYADGE-------------RERIVEERKLFVGMLSKQCTENEVREIFSRF-GHIEDCYILRDPDGLSRGCAFV 170 (510)
T ss_pred CCcceeecccchh-------------hhccccchhhhhhhccccccHHHHHHHHHhh-CccchhhheecccccccceeEE
Confidence 68888886432 1222235899999999999999999999998 999999999985 789999999
Q ss_pred EeCChHHHHHHHHh
Q 019691 322 EFAMVSEPFSWHAC 335 (337)
Q Consensus 322 eF~~~e~A~~Ale~ 335 (337)
.|.+.|.|..||++
T Consensus 171 ~fstke~A~~Aika 184 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKA 184 (510)
T ss_pred EEehHHHHHHHHHh
Confidence 99999999999874
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.89 E-value=6.4e-22 Score=198.75 Aligned_cols=156 Identities=24% Similarity=0.315 Sum_probs=127.1
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||+ .+|+++|+++|+.||.|.+|+++.++ +|+|||+|.+.++|..||. |+|..|.|++|+|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3567999999998 69999999999999999999998875 4899999999999999997 99999999999999876
Q ss_pred CCCCCCCCC------------CCC----CCcc-------ccccccceeeEeCCCCCCCHHHHHHHHhhcCCc--eEEEEE
Q 019691 254 TAIAPVNPT------------FLP----RSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRL 308 (337)
Q Consensus 254 ~~~~~~~~~------------~~p----~~~~-------~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~--I~~v~i 308 (337)
......... +.. +... ....+..+|||+|||..+++++|+++|+++ |. |..+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~-G~~~i~~ik~ 428 (481)
T TIGR01649 350 QQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAEN-GVHKVKKFKF 428 (481)
T ss_pred cccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhc-CCccceEEEE
Confidence 532111100 100 0000 001246799999999999999999999997 87 888988
Q ss_pred eccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 309 LGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 309 ~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.......+++|||+|.+.++|.+||..
T Consensus 429 ~~~~~~~~~~gfVeF~~~e~A~~Al~~ 455 (481)
T TIGR01649 429 FPKDNERSKMGLLEWESVEDAVEALIA 455 (481)
T ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHH
Confidence 766555688999999999999999975
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=1.1e-21 Score=196.94 Aligned_cols=150 Identities=21% Similarity=0.176 Sum_probs=122.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH---hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS---LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~---l~g~~l~g~~I~V~~sk 253 (337)
++++|||+|||.++++++|+++|+.||.|.+|+++.+ ++||||+|.+.++|.+|+. +++..+.|++|+|.++.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 3689999999999999999999999999999999865 4799999999999999997 47899999999999985
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
......... .. ..........+|||.||+..+|+++|+++|++| |.|.+|.++++.+ +++|||+|.+.++|.+|+
T Consensus 77 ~~~~~~~~~-~~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~-G~V~~v~i~~~~~--~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 77 SQEIKRDGN-SD-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY-GKVLRIVTFTKNN--VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CcccccCCC-Cc-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc-CCEEEEEEEecCC--ceEEEEEECCHHHHHHHH
Confidence 432111100 00 000011234589999999999999999999997 9999999987654 469999999999999999
Q ss_pred Hh
Q 019691 334 AC 335 (337)
Q Consensus 334 e~ 335 (337)
+.
T Consensus 152 ~~ 153 (481)
T TIGR01649 152 AA 153 (481)
T ss_pred HH
Confidence 63
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.3e-21 Score=197.40 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=123.7
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcC------------CCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCe
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC------------GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGT 240 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~------------G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~ 240 (337)
......++|||+|||+.+|+++|+++|..+ +.|..+.+..+ +|||||+|.+.++|..||.|+|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~----kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE----KNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC----CCEEEEEeCCHHHHhhhhcCCCe
Confidence 345567899999999999999999999864 34555555433 58999999999999999999999
Q ss_pred EecccceEEccCCCCCCCCCC--CC---CCC----------CccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEE
Q 019691 241 MLGFYPVRVLPSKTAIAPVNP--TF---LPR----------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR 305 (337)
Q Consensus 241 ~l~g~~I~V~~sk~~~~~~~~--~~---~p~----------~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~ 305 (337)
.|.|++|+|............ .. .+. .........++|||+|||..+++++|+++|+.| |.|..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF-GDLKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeE
Confidence 999999999865433211100 00 000 000012245799999999999999999999997 99999
Q ss_pred EEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 306 LRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 306 v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++.+. +.++|||||+|.+.++|..||+.
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 9999874 67899999999999999999974
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.8e-21 Score=196.57 Aligned_cols=140 Identities=22% Similarity=0.248 Sum_probs=119.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEec-ccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~-g~~I~V~~ 251 (337)
+...++|||+|||+++++++|+++|++||.|.+|+|++|... ++|||||+|.+.++|++||+ |++..+. ++.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 445689999999999999999999999999999999999544 79999999999999999998 9998885 67777765
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEec---cCCCCceEEEEEeCChHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG---DYQHSTRIAFVEFAMVSE 328 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~---d~~~~~g~aFVeF~~~e~ 328 (337)
+. ..++|||+|||..+++++|.+.|++++..+..+.+.. +..+++|||||+|++.++
T Consensus 135 S~--------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 135 SV--------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred cc--------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 41 2478999999999999999999999744565554443 235689999999999999
Q ss_pred HHHHHH
Q 019691 329 PFSWHA 334 (337)
Q Consensus 329 A~~Ale 334 (337)
|.+|++
T Consensus 195 Aa~Air 200 (578)
T TIGR01648 195 AAMARR 200 (578)
T ss_pred HHHHHH
Confidence 999985
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.9e-22 Score=192.74 Aligned_cols=214 Identities=21% Similarity=0.305 Sum_probs=170.4
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK-RNGYSQGKRRMN 165 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~-~~~~~~G~r~~~ 165 (337)
+-..|.++|+..+|+.+..||.+. + ++++ ||.+--... ++.+.. ..+|...+. ..
T Consensus 11 ~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy----------~yvnf~~~~----------da~~A~~~~n~~~~~~-~~ 66 (369)
T KOG0123|consen 11 TEAMLFDKFSPAGPVLSIRVCRDA-T--SLGY----------AYVNFQQPA----------DAERALDTMNFDVLKG-KP 66 (369)
T ss_pred ChHHHHHHhcccCCceeEEEeecC-C--ccce----------EEEecCCHH----------HHHHHHHHcCCcccCC-cE
Confidence 558899999999999999999999 5 7744 343321111 111111 334433222 25
Q ss_pred CCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecc
Q 019691 166 CRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (337)
Q Consensus 166 ~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g 244 (337)
.|.+|+++++.. |||.||+++++..+|.++|+.||+|++|++..+.++++|| ||+|+++++|++|++ +||..+.+
T Consensus 67 ~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 67 IRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred EEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence 678888887765 9999999999999999999999999999999999999999 999999999999998 99999999
Q ss_pred cceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEe
Q 019691 245 YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEF 323 (337)
Q Consensus 245 ~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF 323 (337)
++|.|...........+.. + .......+|+.|++..++++.|..+|..+ |.|..+.++.+. +++++|+||.|
T Consensus 143 kki~vg~~~~~~er~~~~~----~--~~~~~t~v~vk~~~~~~~~~~l~~~f~~~-g~i~s~~v~~~~~g~~~~~gfv~f 215 (369)
T KOG0123|consen 143 KKIYVGLFERKEEREAPLG----E--YKKRFTNVYVKNLEEDSTDEELKDLFSAY-GSITSVAVMRDSIGKSKGFGFVNF 215 (369)
T ss_pred CeeEEeeccchhhhccccc----c--hhhhhhhhheeccccccchHHHHHhhccc-CcceEEEEeecCCCCCCCccceee
Confidence 9999987532221111111 1 22345789999999999999999999997 999999999985 66899999999
Q ss_pred CChHHHHHHHHh
Q 019691 324 AMVSEPFSWHAC 335 (337)
Q Consensus 324 ~~~e~A~~Ale~ 335 (337)
++.++|..|++.
T Consensus 216 ~~~e~a~~av~~ 227 (369)
T KOG0123|consen 216 ENPEDAKKAVET 227 (369)
T ss_pred cChhHHHHHHHh
Confidence 999999999874
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3e-21 Score=187.02 Aligned_cols=244 Identities=18% Similarity=0.256 Sum_probs=162.8
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCccc------CCCCCCCCCCCCCCCCCCCC--CC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIM------HTDGTANTNGHTTTRRKRNG--YS 158 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~------~~~~~~~~~g~~~~~r~~~~--~~ 158 (337)
.-.+|+++||.++|+-.+||--.......-+|..+.| ...-.... ...+.+-.--.+...+|.+. -.
T Consensus 18 ~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtF-----am~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~ 92 (678)
T KOG0127|consen 18 TGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTF-----AMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVE 92 (678)
T ss_pred chhHHHHhhhcccCcceeEEecCCCcccccCccceee-----ehHhHHHHHHHHhhcCcccceecccccccccccchhcc
Confidence 6789999999999999999987665544444322211 11110000 00000000000000112111 12
Q ss_pred CCCCCCC---CCCCccccC--CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHH
Q 019691 159 QGKRRMN---CRTSNAQQD--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGAR 232 (337)
Q Consensus 159 ~G~r~~~---~r~~~~~~~--~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~ 232 (337)
.|.+.-. .....+... +.....|.|+|||+.+.+.+|+.+|+.||.|.+|.|++.+.+ -.|||||+|....+|.
T Consensus 93 ~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~ 172 (678)
T KOG0127|consen 93 KGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAE 172 (678)
T ss_pred cccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHH
Confidence 2222111 111111122 233678999999999999999999999999999999977766 4699999999999999
Q ss_pred HHHH-hCCeEecccceEEccCCCCCC-CC------------C--------CC-----C-------CCCC-----------
Q 019691 233 AALS-LAGTMLGFYPVRVLPSKTAIA-PV------------N--------PT-----F-------LPRS----------- 267 (337)
Q Consensus 233 ~Al~-l~g~~l~g~~I~V~~sk~~~~-~~------------~--------~~-----~-------~p~~----------- 267 (337)
.||+ +|+.+|.||+|-|.|+...-. .. . +. + ...+
T Consensus 173 ~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ 252 (678)
T KOG0127|consen 173 KALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAF 252 (678)
T ss_pred HHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhh
Confidence 9998 999999999999999532100 00 0 00 0 0000
Q ss_pred ----c----------------------------cccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CC
Q 019691 268 ----E----------------------------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQ 313 (337)
Q Consensus 268 ----~----------------------------~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~ 313 (337)
. ++......+|||+|||+++|+++|...|++| |.|.++.|+.+ ++
T Consensus 253 ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF-G~v~ya~iV~~k~T~ 331 (678)
T KOG0127|consen 253 EEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF-GEVKYAIIVKDKDTG 331 (678)
T ss_pred hccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh-ccceeEEEEeccCCC
Confidence 0 0001123799999999999999999999997 99999988876 47
Q ss_pred CCceEEEEEeCChHHHHHHHHhc
Q 019691 314 HSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 314 ~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
+++|.|||.|.+..+|..||+++
T Consensus 332 ~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 332 HSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred CcccceEEEeccHHHHHHHHHhc
Confidence 89999999999999999999975
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.1e-21 Score=175.12 Aligned_cols=146 Identities=22% Similarity=0.398 Sum_probs=130.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+..+..|.|.-||..+|+++|+.+|...|+|++|++++|+-+ +.||+||.|.++++|++|+. |||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 345567999999999999999999999999999999999976 78999999999999999998 999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A 329 (337)
++.. .. ......|||.+||+.+|..+|..+|++| |.|..-+|+.|. +.++|.+||.|+..++|
T Consensus 118 ARPS-----------s~---~Ik~aNLYvSGlPktMtqkelE~iFs~f-GrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 118 ARPS-----------SD---SIKDANLYVSGLPKTMTQKELEQIFSPF-GRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred ccCC-----------hh---hhcccceEEecCCccchHHHHHHHHHHh-hhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 7522 11 2345899999999999999999999998 999988888884 67999999999999999
Q ss_pred HHHHHh
Q 019691 330 FSWHAC 335 (337)
Q Consensus 330 ~~Ale~ 335 (337)
..||..
T Consensus 183 e~AIk~ 188 (360)
T KOG0145|consen 183 EEAIKG 188 (360)
T ss_pred HHHHHh
Confidence 998863
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=8.7e-22 Score=167.57 Aligned_cols=146 Identities=24% Similarity=0.345 Sum_probs=127.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...||||+||+..++++.|+++|-+.|+|..+++.+|+.+ .+||||++|.++|+|+.|++ |+..+|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4579999999999999999999999999999999999876 58999999999999999999 99999999999999863
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEE-EEeccC--CCCceEEEEEeCChHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMVSEPF 330 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v-~i~~d~--~~~~g~aFVeF~~~e~A~ 330 (337)
.. ........++||+||.+.+++..|.+.|+.| |.+.+. +++++. ++++|+|||.|++.|.+.
T Consensus 88 ~~-------------~~nl~vganlfvgNLd~~vDe~~L~dtFsaf-G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 88 AH-------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAF-GVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred cc-------------cccccccccccccccCcchhHHHHHHHHHhc-cccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 11 1112245899999999999999999999997 987774 677764 678999999999999999
Q ss_pred HHHHhc
Q 019691 331 SWHACF 336 (337)
Q Consensus 331 ~Ale~s 336 (337)
+|+++.
T Consensus 154 ~ai~s~ 159 (203)
T KOG0131|consen 154 AAIGSM 159 (203)
T ss_pred HHHHHh
Confidence 999863
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.85 E-value=2.9e-20 Score=187.92 Aligned_cols=222 Identities=20% Similarity=0.198 Sum_probs=153.1
Q ss_pred CCCceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCC
Q 019691 61 AGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDG 140 (337)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 140 (337)
..++++-|--++..+ +..+|.++|++++++.++.|+.+ ....+.+|+-+.|... ..+..-
T Consensus 56 ~~~~~lFVgnLp~~~-----------tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~--------e~A~~A 115 (578)
T TIGR01648 56 GRGCEVFVGKIPRDL-----------YEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGK--------EEAKEA 115 (578)
T ss_pred CCCCEEEeCCCCCCC-----------CHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCH--------HHHHHH
Confidence 345777776666555 77899999999999999999888 4455555543322100 000000
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEecC---C
Q 019691 141 TANTNGHTTTRRKRNGY--SQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGD---P 214 (337)
Q Consensus 141 ~~~~~g~~~~~r~~~~~--~~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~-V~~v~i~~d---~ 214 (337)
-..-+++ ..|+ .+... .....++|||+|||.++++++|.+.|..++. +.++.+... .
T Consensus 116 ----------i~~lng~~i~~Gr-~l~V~------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~k 178 (578)
T TIGR01648 116 ----------VKLLNNYEIRPGR-LLGVC------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADK 178 (578)
T ss_pred ----------HHHcCCCeecCCc-ccccc------ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccccc
Confidence 0000011 0111 11111 1224679999999999999999999999864 444444322 2
Q ss_pred CCCceEEEEEEcCHHHHHHHHH-hC--CeEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHH
Q 019691 215 NSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGD 291 (337)
Q Consensus 215 ~~~kg~aFV~F~~~e~A~~Al~-l~--g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~ 291 (337)
..++|||||+|.+.++|..|++ |+ ...+.++.|.|.|+....... .+.....++|||+||+..+++++
T Consensus 179 gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---------~~~~~~~k~LfVgNL~~~~tee~ 249 (578)
T TIGR01648 179 KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---------EDVMAKVKILYVRNLMTTTTEEI 249 (578)
T ss_pred CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc---------ccccccccEEEEeCCCCCCCHHH
Confidence 2368999999999999999996 54 356889999999974321110 01112357899999999999999
Q ss_pred HHHHHhhcC--CceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 292 IKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 292 L~~~F~~~~--G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
|+++|++ | |.|.+|+++++ ||||+|++.++|.+||+.
T Consensus 250 L~~~F~~-f~~G~I~rV~~~rg------fAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 250 IEKSFSE-FKPGKVERVKKIRD------YAFVHFEDREDAVKAMDE 288 (578)
T ss_pred HHHHHHh-cCCCceEEEEeecC------eEEEEeCCHHHHHHHHHH
Confidence 9999998 6 99999987654 999999999999999973
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=4.1e-20 Score=175.67 Aligned_cols=144 Identities=23% Similarity=0.246 Sum_probs=125.2
Q ss_pred ccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEe-ccc
Q 019691 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTML-GFY 245 (337)
Q Consensus 170 ~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l-~g~ 245 (337)
|+...+.....|||+.||.++.|++|.-+|.+.|+|-+++|++|+.+ ++|||||.|.+.++|++|++ ||+..| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 34444456678999999999999999999999999999999999765 79999999999999999998 999877 578
Q ss_pred ceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---CCCCceEEEEE
Q 019691 246 PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVE 322 (337)
Q Consensus 246 ~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~~~~~g~aFVe 322 (337)
.|.|+-+. ..++|||+|||+.+++++|.+.|++..-.|..|.+... +.+++|||||+
T Consensus 155 ~igvc~Sv--------------------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFve 214 (506)
T KOG0117|consen 155 LLGVCVSV--------------------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVE 214 (506)
T ss_pred EeEEEEee--------------------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEE
Confidence 99999753 45899999999999999999999998336888877764 35799999999
Q ss_pred eCChHHHHHHH
Q 019691 323 FAMVSEPFSWH 333 (337)
Q Consensus 323 F~~~e~A~~Al 333 (337)
|.++..|..|-
T Consensus 215 Ye~H~~Aa~aR 225 (506)
T KOG0117|consen 215 YESHRAAAMAR 225 (506)
T ss_pred eecchhHHHHH
Confidence 99999888764
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.83 E-value=1.2e-19 Score=183.31 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=124.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+ ++|||||+|.+.++|..||. |+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999988754 68999999999999999997 9999999999999987
Q ss_pred CCCCCCCCCCC---------CCC-----CccccccccceeeEeCCCCC--C--------CHHHHHHHHhhcCCceEEEEE
Q 019691 253 KTAIAPVNPTF---------LPR-----SEDEREMCSRTIYCTNIDKK--V--------TQGDIKLFFESVCGEVQRLRL 308 (337)
Q Consensus 253 k~~~~~~~~~~---------~p~-----~~~~~~~~~~~l~V~NLp~~--~--------tee~L~~~F~~~~G~I~~v~i 308 (337)
........... .+. .......+..+|+|.|+... + ..++|+++|++| |.|..|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~-G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY-GPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc-CCeeEEEe
Confidence 43221111000 000 00011235678999999642 1 236799999998 99999999
Q ss_pred eccC-----CCCceEEEEEeCChHHHHHHHHh
Q 019691 309 LGDY-----QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 309 ~~d~-----~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+++. +.+.|+|||+|.+.++|.+||+.
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 8752 23578999999999999999974
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.9e-20 Score=177.62 Aligned_cols=132 Identities=24% Similarity=0.390 Sum_probs=122.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~ 257 (337)
..|||| +++|+..|.++|+.+|.|.++++++|. ++.|||||.|.++++|.+||. +|...+.|++|++.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r--- 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR--- 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc---
Confidence 368999 999999999999999999999999999 799999999999999999998 999999999999999631
Q ss_pred CCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 258 ~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++ ..|||+||+++++..+|.++|+.| |+|.+|++..+...++|| ||+|++.++|.+|++.
T Consensus 75 ---------d~-------~~~~i~nl~~~~~~~~~~d~f~~~-g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 75 ---------DP-------SLVFIKNLDESIDNKSLYDTFSEF-GNILSCKVATDENGSKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred ---------CC-------ceeeecCCCcccCcHHHHHHHHhh-cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHH
Confidence 11 229999999999999999999997 999999999997669999 9999999999999974
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.83 E-value=2.5e-19 Score=178.71 Aligned_cols=234 Identities=19% Similarity=0.250 Sum_probs=153.8
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCC----CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNG----FGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKR 162 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~----~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G~r 162 (337)
+..+|.++|++++++..+.++.+..+..+.+++.+.|.... .-..++.... |.+- .-.+.+...
T Consensus 102 ~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~--------g~~i----~v~~~~~~~ 169 (457)
T TIGR01622 102 RERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLL--------GRPI----IVQSSQAEK 169 (457)
T ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEEC--------Ceee----EEeecchhh
Confidence 77899999999999999999987766666655544221100 0000000000 0000 000000000
Q ss_pred CCCCC-CCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hC
Q 019691 163 RMNCR-TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LA 238 (337)
Q Consensus 163 ~~~~r-~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~ 238 (337)
..... ...........++|||+|||..+++++|+++|+.||.|..|.++.++.+ ++|||||+|.+.++|..|+. |+
T Consensus 170 ~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~ 249 (457)
T TIGR01622 170 NRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN 249 (457)
T ss_pred hhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 00000 0000001123689999999999999999999999999999999988765 68999999999999999997 99
Q ss_pred CeEecccceEEccCCCCCCCC-----------------------------------------CC-C--------------
Q 019691 239 GTMLGFYPVRVLPSKTAIAPV-----------------------------------------NP-T-------------- 262 (337)
Q Consensus 239 g~~l~g~~I~V~~sk~~~~~~-----------------------------------------~~-~-------------- 262 (337)
|..+.|++|+|.++....... .+ .
T Consensus 250 g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (457)
T TIGR01622 250 GFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDG 329 (457)
T ss_pred CcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccc
Confidence 999999999999853211000 00 0
Q ss_pred ----CCC--------------C-Ccc-ccccccceeeEeCCCCCCC----------HHHHHHHHhhcCCceEEEEEeccC
Q 019691 263 ----FLP--------------R-SED-EREMCSRTIYCTNIDKKVT----------QGDIKLFFESVCGEVQRLRLLGDY 312 (337)
Q Consensus 263 ----~~p--------------~-~~~-~~~~~~~~l~V~NLp~~~t----------ee~L~~~F~~~~G~I~~v~i~~d~ 312 (337)
..+ . ... ......++|+|.||....+ .+||++.|++| |.|..|.+...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~-G~v~~v~v~~~- 407 (457)
T TIGR01622 330 IIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY-GGVVHIYVDTK- 407 (457)
T ss_pred cccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc-CCeeEEEEeCC-
Confidence 000 0 000 0124567899999965444 36899999997 99999988643
Q ss_pred CCCceEEEEEeCChHHHHHHHHh
Q 019691 313 QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 313 ~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...|++||+|.+.++|.+|++.
T Consensus 408 -~~~G~~fV~F~~~e~A~~A~~~ 429 (457)
T TIGR01622 408 -NSAGKIYLKFSSVDAALAAFQA 429 (457)
T ss_pred -CCceeEEEEECCHHHHHHHHHH
Confidence 4568999999999999999974
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.5e-20 Score=173.51 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=151.9
Q ss_pred HHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q 019691 89 RDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGY--SQGKRRMNC 166 (337)
Q Consensus 89 ~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~--~~G~r~~~~ 166 (337)
.+|..+|.+++++-+.++..+.-....-+|+.+.|-.-.. + +. .-+.-+++ ..|+. +.+
T Consensus 98 deLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~--------A---------q~-Aik~lnn~Eir~GK~-igv 158 (506)
T KOG0117|consen 98 DELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEE--------A---------QE-AIKELNNYEIRPGKL-LGV 158 (506)
T ss_pred hhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHH--------H---------HH-HHHHhhCccccCCCE-eEE
Confidence 4799999999999999988886666666655442210000 0 00 01112222 23432 111
Q ss_pred CCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEecCCC---CCceEEEEEEcCHHHHHHHHH--hCC-
Q 019691 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPN---SVLRFAFVEFTDEEGARAALS--LAG- 239 (337)
Q Consensus 167 r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~-V~~v~i~~d~~---~~kg~aFV~F~~~e~A~~Al~--l~g- 239 (337)
......+.|||+|||.+.++++|.+.|++.++ |++|.+...+. .++|||||+|.+...|..|-. +++
T Consensus 159 ------c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 159 ------CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred ------EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 12346678999999999999999999998874 67777765543 379999999999999998885 554
Q ss_pred eEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEE
Q 019691 240 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIA 319 (337)
Q Consensus 240 ~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~a 319 (337)
+.+-|..+.|.|+.....+-. + .-...+.|||+||+.++|++.|+++|+.| |.|++|+.++| ||
T Consensus 233 ~klwgn~~tVdWAep~~e~de--------d-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRVkk~rD------Ya 296 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDE--------D-TMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVERVKKPRD------YA 296 (506)
T ss_pred eeecCCcceeeccCcccCCCh--------h-hhhheeeeeeeccchhhhHHHHHHHHHhc-cceEEeecccc------ee
Confidence 578899999999853322111 1 12245889999999999999999999998 99999999987 99
Q ss_pred EEEeCChHHHHHHHHh
Q 019691 320 FVEFAMVSEPFSWHAC 335 (337)
Q Consensus 320 FVeF~~~e~A~~Ale~ 335 (337)
||.|.+.++|.+||+-
T Consensus 297 FVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 297 FVHFAEREDAVKAMKE 312 (506)
T ss_pred EEeecchHHHHHHHHH
Confidence 9999999999999974
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.8e-19 Score=167.48 Aligned_cols=152 Identities=25% Similarity=0.372 Sum_probs=125.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
+.|||+.|.+.+.|+.|+..|..||.|.+|.|..|+-+ ++|||||+|+-+|.|+.|++ |||.+++||.|+|.... +
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs-N 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS-N 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC-C
Confidence 46999999999999999999999999999999999876 79999999999999999998 99999999999998531 1
Q ss_pred CCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHH
Q 019691 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Al 333 (337)
+....|... .-.+......+|||..+.++++++||+.+|+.| |+|.+|.+.+++ +..+||+||+|.+..+-..|+
T Consensus 193 mpQAQpiID--~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF-G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 193 MPQAQPIID--MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CcccchHHH--HHHHHHHhhheEEeeecCCCccHHHHHHHHHhh-cceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 111111000 001112356899999999999999999999997 999999999985 568999999999987766665
Q ss_pred H
Q 019691 334 A 334 (337)
Q Consensus 334 e 334 (337)
.
T Consensus 270 a 270 (544)
T KOG0124|consen 270 A 270 (544)
T ss_pred h
Confidence 4
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.4e-18 Score=168.61 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=129.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
.||||++||+.++.++|.++|+.+|+|..+.++.++.+ ++||+||.|.-.+++++|+. ..+..|.|+.|+|.+++.-
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999876 69999999999999999998 8999999999999986533
Q ss_pred CCCCC-----CC-----CCCCCcccc--ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEE
Q 019691 256 IAPVN-----PT-----FLPRSEDER--EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVE 322 (337)
Q Consensus 256 ~~~~~-----~~-----~~p~~~~~~--~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVe 322 (337)
..... +. +....+... ..+...|.|+|||+.+.+.+|+.+|+.| |.|..|.|++.. ++-.|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~-G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF-GKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc-ceEEEEEcccCCCCCccceEEEE
Confidence 22110 00 011111111 2247899999999999999999999998 999999999764 5555999999
Q ss_pred eCChHHHHHHHHh
Q 019691 323 FAMVSEPFSWHAC 335 (337)
Q Consensus 323 F~~~e~A~~Ale~ 335 (337)
|....+|..||+.
T Consensus 165 fk~~~dA~~Al~~ 177 (678)
T KOG0127|consen 165 FKEKKDAEKALEF 177 (678)
T ss_pred EeeHHHHHHHHHh
Confidence 9999999999974
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.79 E-value=4e-18 Score=170.02 Aligned_cols=149 Identities=24% Similarity=0.365 Sum_probs=125.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 181 VfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-----~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
|||.||++++|.++|..+|...|.|.++.|...+.. +.|||||+|.++++|+.|++ |+|+.+.|+.|.|..+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~- 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE- 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-
Confidence 999999999999999999999999999988765532 57999999999999999998 99999999999999875
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~A 332 (337)
...... .. .........+.|.|+|||+..+..+|+.+|..| |.|..|+|+... ...+|||||+|-++.+|.+|
T Consensus 597 ~k~~~~--~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF-GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 597 NKPAST--VG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAF-GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred Cccccc--cc--cccccccccceeeeeccchHHHHHHHHHHHhcc-cceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 111000 01 111112236899999999999999999999998 999999999863 44799999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
+++
T Consensus 672 ~~a 674 (725)
T KOG0110|consen 672 FDA 674 (725)
T ss_pred HHh
Confidence 864
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.77 E-value=7.5e-19 Score=159.24 Aligned_cols=125 Identities=26% Similarity=0.457 Sum_probs=116.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCCC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAP 258 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~~ 258 (337)
.|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||+.++...|+.|+. |++.+|.|..|.|+.++..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 6899999999999999999999999999999865 99999999999999998 9999999999999987521
Q ss_pred CCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 259 VNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 259 ~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
...+.+|+|+||.+.++.++|+..|++| |.|..++|.+| |+||.|+..++|..|+
T Consensus 75 -------------sk~stkl~vgNis~tctn~ElRa~fe~y-gpviecdivkd------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 -------------SKASTKLHVGNISPTCTNQELRAKFEKY-GPVIECDIVKD------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred -------------CCCccccccCCCCccccCHHHhhhhccc-CCceeeeeecc------eeEEEEeeccchHHHH
Confidence 2356899999999999999999999998 99999999998 9999999999999988
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.72 E-value=4.4e-18 Score=165.71 Aligned_cols=162 Identities=26% Similarity=0.355 Sum_probs=134.9
Q ss_pred cccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceE
Q 019691 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVR 248 (337)
Q Consensus 171 ~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~ 248 (337)
...++.+.||||+..|+...+..+|.+||+.+|.|..|+++.|+.+ ++|.|||+|.+.+.+..||.|.|..+.|.+|.
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~ 251 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVI 251 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeE
Confidence 3345668899999999999999999999999999999999999876 79999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCCCCCc-cccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCC
Q 019691 249 VLPSKTAIAPVNPTFLPRSE-DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAM 325 (337)
Q Consensus 249 V~~sk~~~~~~~~~~~p~~~-~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~ 325 (337)
|..+....... ....+.-. ..-..+...|||+||.+.+++++|+.+|++| |.|..|.+.+| .+.++||+||+|.+
T Consensus 252 vq~sEaeknr~-a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf-g~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 252 VQLSEAEKNRA-ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF-GKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred ecccHHHHHHH-HhccccccccccccchhhhhhcccccCchHHHHhhhccCc-ccceeeeeccccccccccCcceEEEec
Confidence 99864332211 00111111 0111223349999999999999999999998 99999999998 58899999999999
Q ss_pred hHHHHHHHH
Q 019691 326 VSEPFSWHA 334 (337)
Q Consensus 326 ~e~A~~Ale 334 (337)
.++|.+|++
T Consensus 330 ~~~ar~a~e 338 (549)
T KOG0147|consen 330 KEDARKALE 338 (549)
T ss_pred HHHHHHHHH
Confidence 999999976
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=9.1e-16 Score=131.21 Aligned_cols=150 Identities=19% Similarity=0.253 Sum_probs=119.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
..++|||+|||.++.+.+|.++|.+||.|..|.+...+ ....||||+|+++.+|+.||. -+|..+.|+.|+|+.++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46799999999999999999999999999999874332 345799999999999999998 9999999999999987543
Q ss_pred CCCC--CCCCC-----------CCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEE
Q 019691 256 IAPV--NPTFL-----------PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVE 322 (337)
Q Consensus 256 ~~~~--~~~~~-----------p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVe 322 (337)
-... ...+. .+-+.. ......|.|++||++-+++||++.+.+. |.|....+.+|- ++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgpps-rrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rDg-----~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPS-RRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRDG-----VGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcc-cccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeeccc-----ceeee
Confidence 2100 00000 000111 1234689999999999999999999996 999999998873 68999
Q ss_pred eCChHHHHHHHH
Q 019691 323 FAMVSEPFSWHA 334 (337)
Q Consensus 323 F~~~e~A~~Ale 334 (337)
|...|+.+.|+.
T Consensus 157 ~~r~eDMkYAvr 168 (241)
T KOG0105|consen 157 YLRKEDMKYAVR 168 (241)
T ss_pred eeehhhHHHHHH
Confidence 999999988875
No 31
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.67 E-value=1e-16 Score=150.66 Aligned_cols=150 Identities=23% Similarity=0.346 Sum_probs=126.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
...+|||++|+++++++.|++.|.+||+|.+|.+++|+.+ ++||+||+|++.+...++|....+.|.++.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6689999999999999999999999999999999999986 68999999999999999998777888899888777521
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~A 332 (337)
...... ..+......|||++||..++++++++.|++| |.|..+.++.|. ..++||+||.|.+.+++.++
T Consensus 85 r~~~~~--------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~-g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTK--------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQF-GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred cccccc--------cccccceeEEEecCcCCCCchHHHhhhhhcc-ceeEeeEEeecccccccccceeeEecccccccee
Confidence 111100 0011146799999999999999999999998 999999998885 46899999999999999887
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
+.+
T Consensus 156 ~~~ 158 (311)
T KOG4205|consen 156 TLQ 158 (311)
T ss_pred ccc
Confidence 754
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=4.3e-15 Score=150.83 Aligned_cols=158 Identities=14% Similarity=0.231 Sum_probs=107.6
Q ss_pred chhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCC-----CCcCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019691 84 KDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNG-----FGYTNNFIMHTDGTANTNGHTTTRRKRNGYS 158 (337)
Q Consensus 84 ~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~-----~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ 158 (337)
++.+-.+|.++|++++++.++.++.+..+..+.+|+.+.|.... .-..++....+.... -.+..+..
T Consensus 117 ~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik--------V~rp~~~p 188 (612)
T TIGR01645 117 FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK--------VGRPSNMP 188 (612)
T ss_pred CCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee--------eccccccc
Confidence 34477899999999999999999988877777766544332110 001111111100000 00000000
Q ss_pred CCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH
Q 019691 159 QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS 236 (337)
Q Consensus 159 ~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~ 236 (337)
+.... ...........++|||+|||+++++++|+++|+.||.|.+|++.+++.+ ++|||||+|.+.++|.+|++
T Consensus 189 ~a~~~----~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 189 QAQPI----IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccc----cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 00000 0000111224578999999999999999999999999999999998765 68999999999999999998
Q ss_pred -hCCeEecccceEEccCC
Q 019691 237 -LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 237 -l~g~~l~g~~I~V~~sk 253 (337)
||+..++|+.|+|.++.
T Consensus 265 amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HhCCCeeCCeEEEEEecC
Confidence 99999999999997744
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.4e-16 Score=149.50 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=105.2
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNC 166 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G~r~~~~ 166 (337)
...+|.++|.+.+-|-++-+++++.+..+.+++.+.|-..--+-- -...-+. ..-+......+..
T Consensus 47 sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~-a~~Alhn--------------~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 47 SEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADE-AINALHN--------------QKTLPGMHHPVQV 111 (510)
T ss_pred cHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHH-HHHHhhc--------------ccccCCCCcceee
Confidence 447888999999999999999999888888776553311000000 0000000 0000111112222
Q ss_pred CCCccccC-CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCe-Ee
Q 019691 167 RTSNAQQD-EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGT-ML 242 (337)
Q Consensus 167 r~~~~~~~-~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~-~l 242 (337)
+.....++ -...+.|||+-|+..+||.+++++|++||.|++|.|+++... ++|+|||.|.+.+.|..||+ |||. .+
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 22211111 134689999999999999999999999999999999999886 89999999999999999998 9985 56
Q ss_pred cc--cceEEccCC
Q 019691 243 GF--YPVRVLPSK 253 (337)
Q Consensus 243 ~g--~~I~V~~sk 253 (337)
.| .+|.|.|+.
T Consensus 192 eGcs~PLVVkFAD 204 (510)
T KOG0144|consen 192 EGCSQPLVVKFAD 204 (510)
T ss_pred ccCCCceEEEecc
Confidence 66 578888865
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.63 E-value=5.6e-15 Score=142.58 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=121.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
......|.+.+||+++|+++|++||+.++ |..+.+.+......|-|||+|.+++++++||+.+...++.+-|.|..+..
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 34556789999999999999999999985 77787777766678999999999999999999999999999999988643
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--EEEeccC-CCCceEEEEEeCChHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGDY-QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--v~i~~d~-~~~~g~aFVeF~~~e~A~~ 331 (337)
...... +.+..+. .......|.+++||+.+|++||.++|+.. .|.. +.++.+. ++++|-|||.|++.+.|++
T Consensus 86 ~e~d~~--~~~~g~~-s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 86 AEADWV--MRPGGPN-SSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cccccc--ccCCCCC-CCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 322111 1111111 11355789999999999999999999865 4444 3344553 6799999999999999999
Q ss_pred HHH
Q 019691 332 WHA 334 (337)
Q Consensus 332 Ale 334 (337)
||.
T Consensus 161 Al~ 163 (510)
T KOG4211|consen 161 ALG 163 (510)
T ss_pred HHH
Confidence 985
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.1e-15 Score=147.00 Aligned_cols=165 Identities=22% Similarity=0.341 Sum_probs=114.2
Q ss_pred CCCceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCC
Q 019691 61 AGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDG 140 (337)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 140 (337)
...+++.|.-++..+ +-++|.++|++++++..+.|+.+..+..+.+|+-+.|.... ....+
T Consensus 105 ~~~~~LfVgnLp~~~-----------te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e-----~A~~A--- 165 (346)
T TIGR01659 105 NSGTNLIVNYLPQDM-----------TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEA-----DSQRA--- 165 (346)
T ss_pred CCCcEEEEeCCCCCC-----------CHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHH-----HHHHH---
Confidence 345667776666555 77999999999999999999888776666665533331110 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--Cc
Q 019691 141 TANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VL 218 (337)
Q Consensus 141 ~~~~~g~~~~~r~~~~~~~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~k 218 (337)
-..-++..-..+++..............++|||+|||.++|+++|+++|++||.|..|+|++++.+ ++
T Consensus 166 ----------i~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~k 235 (346)
T TIGR01659 166 ----------IKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPR 235 (346)
T ss_pred ----------HHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccc
Confidence 000001100111122111111222334578999999999999999999999999999999988754 68
Q ss_pred eEEEEEEcCHHHHHHHHH-hCCeEecc--cceEEccCCC
Q 019691 219 RFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKT 254 (337)
Q Consensus 219 g~aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~sk~ 254 (337)
|||||+|.+.++|++||+ |++..+.+ ++|+|.+++.
T Consensus 236 G~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 236 GVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 999999999999999998 99998866 6899988754
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=4.5e-15 Score=133.41 Aligned_cols=172 Identities=19% Similarity=0.352 Sum_probs=130.8
Q ss_pred CCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCe
Q 019691 163 RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGT 240 (337)
Q Consensus 163 ~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~ 240 (337)
.+..++..++....+.|+|||+-|...-.|+|++.+|..||.|.+|.+.+.... +||+|||.|.+.-+|+.||. |+|.
T Consensus 4 piqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 4 PIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred CccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 344444445555557789999999999999999999999999999999998876 79999999999999999998 9885
Q ss_pred E-ecc--cceEEccCCCCCC------------------------------------------------------------
Q 019691 241 M-LGF--YPVRVLPSKTAIA------------------------------------------------------------ 257 (337)
Q Consensus 241 ~-l~g--~~I~V~~sk~~~~------------------------------------------------------------ 257 (337)
. +-| ..|.|+++.+...
T Consensus 84 qTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~m 163 (371)
T KOG0146|consen 84 QTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQM 163 (371)
T ss_pred ccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHH
Confidence 3 333 3455544332000
Q ss_pred --------------CCCCC-------------------------C---------------------------CC------
Q 019691 258 --------------PVNPT-------------------------F---------------------------LP------ 265 (337)
Q Consensus 258 --------------~~~~~-------------------------~---------------------------~p------ 265 (337)
+..|. | +|
T Consensus 164 Q~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~l 243 (371)
T KOG0146|consen 164 QQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPL 243 (371)
T ss_pred HHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchh
Confidence 00000 0 00
Q ss_pred --------------------------CCc------cccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-
Q 019691 266 --------------------------RSE------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY- 312 (337)
Q Consensus 266 --------------------------~~~------~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~- 312 (337)
..+ .......++|||..||.+..+.+|..+|-+| |.|.+.+++.|.
T Consensus 244 q~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF-GhivSaKVFvDRA 322 (371)
T KOG0146|consen 244 QQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF-GHIVSAKVFVDRA 322 (371)
T ss_pred hhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc-cceeeeeeeehhc
Confidence 000 0011356899999999999999999999997 999999998885
Q ss_pred -CCCceEEEEEeCChHHHHHHHHh
Q 019691 313 -QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 313 -~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.+++|+||.|+++.+|+.||.+
T Consensus 323 TNQSKCFGFVSfDNp~SaQaAIqA 346 (371)
T KOG0146|consen 323 TNQSKCFGFVSFDNPASAQAAIQA 346 (371)
T ss_pred cccccceeeEecCCchhHHHHHHH
Confidence 67999999999999999999874
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.60 E-value=2.5e-14 Score=126.38 Aligned_cols=153 Identities=24% Similarity=0.375 Sum_probs=119.9
Q ss_pred CCEEEEcCCCCCCcHHHHHH----HhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 178 RRTVYVSDIDQQVTEEQLAT----LFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~----~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
..||||.||+..+..++|++ +|++||.|.+|...+.. ..+|-|||.|.+.+.|-.|+. |+|..|.|++++|+++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999999999999888 99999999999887554 357999999999999999998 9999999999999997
Q ss_pred CCCCC---CCCCCCCCCCc---------------------------------cccccccceeeEeCCCCCCCHHHHHHHH
Q 019691 253 KTAIA---PVNPTFLPRSE---------------------------------DEREMCSRTIYCTNIDKKVTQGDIKLFF 296 (337)
Q Consensus 253 k~~~~---~~~~~~~p~~~---------------------------------~~~~~~~~~l~V~NLp~~~tee~L~~~F 296 (337)
+.... ...+.+.++.. .....+...+++.|||..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 65311 11111111000 1112356789999999999999999999
Q ss_pred hhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 297 ESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 297 ~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++| .....++++.... +.|||+|.+...|..|.+.
T Consensus 168 ~qf-~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 168 EQF-PGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred hhC-cccceeEeccCCC---ceeEEecchhhhhHHHhhh
Confidence 997 7788888876532 3899999998887766654
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.3e-14 Score=123.01 Aligned_cols=78 Identities=28% Similarity=0.482 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++++++|+++|.+||.|.+|+++.++.+ ++|||||+|.+.++|+.||+ |++..|.+++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 5678999999999999999999999999999999998765 68999999999999999997 99999999999999975
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 3
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.3e-15 Score=131.96 Aligned_cols=119 Identities=22% Similarity=0.317 Sum_probs=98.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
+...|||||+||+.++||+-|..||.+.|.|.+++|+.+ .|+|.|+..
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWATA 50 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccccC
Confidence 346799999999999999999999999999999999876 566777543
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~A 332 (337)
+.....+ .. ...-.|||..|.+.++-++|++.|.+| |+|..++|++|. ++++||+||.|-+.++|..|
T Consensus 51 p~nQsk~-------t~--~~hfhvfvgdls~eI~~e~lr~aF~pF-GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 51 PGNQSKP-------TS--NQHFHVFVGDLSPEIDNEKLREAFAPF-GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred cccCCCC-------cc--ccceeEEehhcchhcchHHHHHHhccc-cccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 3111111 11 124678999999999999999999998 999999999994 68999999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
|..
T Consensus 121 I~~ 123 (321)
T KOG0148|consen 121 IQQ 123 (321)
T ss_pred HHH
Confidence 863
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=8.2e-14 Score=102.11 Aligned_cols=68 Identities=32% Similarity=0.552 Sum_probs=63.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 181 VfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~-~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
|||+|||+++++++|+++|+.||.|..+++..+.. ..+++|||+|.+.++|..|++ ++|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999998633 368999999999999999998 999999999885
No 41
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.51 E-value=4.8e-13 Score=127.40 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=127.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~-~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...|.+||+|||+++.+++|+++|. +.|+|..|.++.|... ++|+|.|+|+++|.+++|++ |+.+.+.||+|.|...
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456799999999999999999997 7899999999999876 79999999999999999998 9999999999999763
Q ss_pred CCCCC-------------------------CCCCC----------CCCCCcc----------------------------
Q 019691 253 KTAIA-------------------------PVNPT----------FLPRSED---------------------------- 269 (337)
Q Consensus 253 k~~~~-------------------------~~~~~----------~~p~~~~---------------------------- 269 (337)
..... ..+.. +.+++.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 32100 00000 1111100
Q ss_pred --------ccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 270 --------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 270 --------~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
-.......+||.||...+....|++.|.- .|.|..|.+-.|+ +.++|+|.++|.++-+|..||.+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHh
Confidence 01123468899999999999999999976 5999999998885 78999999999999999988864
No 42
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.8e-13 Score=123.62 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~~ 255 (337)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.++. ++|||||+|.++++|..||.|+|..|.|++|+|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 358999999999999999999999999999999998864 469999999999999999999999999999999997543
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=2.1e-12 Score=113.72 Aligned_cols=158 Identities=17% Similarity=0.222 Sum_probs=111.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CC--CceEEEEEEcCHHHHHHHHH-hCCeEecc---cce
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NS--VLRFAFVEFTDEEGARAALS-LAGTMLGF---YPV 247 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~-~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g---~~I 247 (337)
+..-|||||++||.++...+|+.+|..|--.+.+.+.... .. .+-+||+.|.+..+|.+|+. |||+.|.- ..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3456899999999999999999999988666665554332 22 35799999999999999998 99999864 567
Q ss_pred EEccCCCCCCCC------CCC---C--------CCC--------------------------------------------
Q 019691 248 RVLPSKTAIAPV------NPT---F--------LPR-------------------------------------------- 266 (337)
Q Consensus 248 ~V~~sk~~~~~~------~~~---~--------~p~-------------------------------------------- 266 (337)
+++.++...... .|. . ..+
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 776654321100 000 0 000
Q ss_pred --Cc----cc-----cccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 267 --SE----DE-----REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 267 --~~----~~-----~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.. .. ......+|||.||.+.++|++|+.+|+.| .....++|.... ....||++|++.+.|..||..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~-~gf~~l~~~~~~--g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY-PGFHILKIRARG--GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC-CCceEEEEecCC--CcceEeecHHHHHHHHHHHHH
Confidence 00 00 00124589999999999999999999998 445555554332 344899999999999999874
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.2e-13 Score=109.30 Aligned_cols=78 Identities=32% Similarity=0.413 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
-..+.||||+||+..++|++|.++|+++|+|..|.|=.|+.+ +.|||||+|.+.++|..||+ ++++.|..++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 346789999999999999999999999999999988777764 78999999999999999999 999999999999998
Q ss_pred C
Q 019691 252 S 252 (337)
Q Consensus 252 s 252 (337)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.41 E-value=2.2e-11 Score=114.24 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=125.3
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 174 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
.......++|.+|.. .++.+.|..+|..||.|..|++++.+. |.|.|++.+..+.++|+. |++..+.|.+|.|+.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 344667899999996 577799999999999999999998876 899999999999999998 999999999999999
Q ss_pred CCCCCC-CCCCCCCC----------------------CCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEE
Q 019691 252 SKTAIA-PVNPTFLP----------------------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308 (337)
Q Consensus 252 sk~~~~-~~~~~~~p----------------------~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i 308 (337)
++.... +..+-.+| ........++++|+.-|.|..+||+.|.++|....-.-.+|++
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkv 439 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKV 439 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEe
Confidence 876532 22221111 0111124578899999999999999999999876224566777
Q ss_pred eccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 309 LGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 309 ~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.-+.....-+.+||++.++|..||-.
T Consensus 440 Fp~kserSssGllEfe~~s~Aveal~~ 466 (494)
T KOG1456|consen 440 FPLKSERSSSGLLEFENKSDAVEALMK 466 (494)
T ss_pred ecccccccccceeeeehHHHHHHHHHH
Confidence 766544444689999999999999865
No 46
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=1.2e-12 Score=96.64 Aligned_cols=68 Identities=37% Similarity=0.569 Sum_probs=61.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 181 VfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
|||+|||+++++++|+++|..||.|..+++..++.. .+++|||+|.+.++|.+|+. +++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999988654 58999999999999999998 777999999875
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=4.2e-12 Score=115.16 Aligned_cols=133 Identities=31% Similarity=0.432 Sum_probs=106.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~--~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
.++|||+|||.++++++|+++|..||.|..+.+..++. .++|||||+|.+.++|..|+. +++..|.|++|+|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999873 379999999999999999998 999999999999999542
Q ss_pred --CCCCCCC-----CC---CCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc
Q 019691 255 --AIAPVNP-----TF---LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD 311 (337)
Q Consensus 255 --~~~~~~~-----~~---~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d 311 (337)
....... .+ ..............+++.+++..++..++...|..+ |.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR-GDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc-ccceeeeccCC
Confidence 1110000 00 011112223466889999999999999999999986 98866666554
No 48
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.39 E-value=2.3e-11 Score=113.20 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=124.5
Q ss_pred ccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCC
Q 019691 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPNS-VLRFAFVEFTDEEGARAALS-LAG 239 (337)
Q Consensus 170 ~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~--------v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g 239 (337)
+....+.....|||+|||.++|.+++.++|++||-|.. |++.++..+ -+|-|++.|-..+++..|+. |++
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 45555666778999999999999999999999998854 788888876 58999999999999999999 999
Q ss_pred eEecccceEEccCCCCCCC------C----CCC-------------CCCCC-ccccccccceeeEeCCCC----CCC---
Q 019691 240 TMLGFYPVRVLPSKTAIAP------V----NPT-------------FLPRS-EDEREMCSRTIYCTNIDK----KVT--- 288 (337)
Q Consensus 240 ~~l~g~~I~V~~sk~~~~~------~----~~~-------------~~p~~-~~~~~~~~~~l~V~NLp~----~~t--- 288 (337)
..|.|+.|+|+.++..... . ... +.|.. ...+....++|.++|+=. ..+
T Consensus 206 ~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred ccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 9999999999987643110 0 000 12222 122234567899998732 233
Q ss_pred ----HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 289 ----QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 289 ----ee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+++|+.-+++| |.|.+|.|.- .++.|.+-|.|.+.++|..|+++
T Consensus 286 ~~dlkedl~eec~K~-G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~ 333 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKF-GQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQT 333 (382)
T ss_pred HHHHHHHHHHHHHHh-CCcceEEEec--cCCCceeEEEeCChHHHHHHHHH
Confidence 35666778886 9999998764 34567899999999999999875
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=2e-12 Score=119.52 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....+.|+|+|||+...+.||+.+|.+||.|.+|.|+.+..++|||+||.|++.+||++|-+ |+|.++.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34567899999999999999999999999999999999988999999999999999999997 99999999999998864
No 50
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=3.5e-12 Score=114.78 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~~ 255 (337)
...||||+||++.+|+++|++||+.||.|.+|+|+++.. .+++|||+|.++++|+.|+.|+|..|.+++|.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 347999999999999999999999999999999998854 458999999999999999999999999999999986543
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.1e-12 Score=116.79 Aligned_cols=145 Identities=23% Similarity=0.282 Sum_probs=113.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~ 257 (337)
..|||++||+.+.+.+|..||..||.+..+.|.. ||+||+|.+..+|..|+. +++..|.+..+.|.+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 3689999999999999999999999999987742 799999999999999997 999999998899998764211
Q ss_pred CC-CC--CCCC---CCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHH
Q 019691 258 PV-NP--TFLP---RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 258 ~~-~~--~~~p---~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~ 331 (337)
.. .+ .+.+ +...........+.+.++...+.+.+|.+.|.++ |.+....+ ..+++||+|++.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~-g~~~~~~~------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA-GEVTYVDA------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc-CCCchhhh------hccccceeehhhhhhhh
Confidence 11 00 0000 0111112345678889999999999999999998 99866544 33489999999999999
Q ss_pred HHHhc
Q 019691 332 WHACF 336 (337)
Q Consensus 332 Ale~s 336 (337)
|++..
T Consensus 149 a~~~l 153 (216)
T KOG0106|consen 149 ALEKL 153 (216)
T ss_pred cchhc
Confidence 99864
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.36 E-value=1.4e-11 Score=116.66 Aligned_cols=151 Identities=25% Similarity=0.320 Sum_probs=119.5
Q ss_pred CCEEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 178 RRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 178 ~rtVfV~nLp-~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
...|.|.||. ..+|.+-|..+|..||.|..|+|+..+. --|+|+|.+...|+-|++ |+|..+.|++|+|.++|..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 5678999997 4689999999999999999999998875 579999999999999998 9999999999999999865
Q ss_pred CCCCCCC----------C--CC--C-----Cccc--cccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCC
Q 019691 256 IAPVNPT----------F--LP--R-----SEDE--REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH 314 (337)
Q Consensus 256 ~~~~~~~----------~--~p--~-----~~~~--~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~ 314 (337)
-...... + +| | ...- .-.++.++++.|||.+++|++|+..|....|.|...++...+
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd-- 451 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD-- 451 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--
Confidence 3222110 1 00 1 1110 113567999999999999999999999874466666665432
Q ss_pred CceEEEEEeCChHHHHHHHH
Q 019691 315 STRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 315 ~~g~aFVeF~~~e~A~~Ale 334 (337)
+.+|++.+.+.|+|..|+-
T Consensus 452 -~kmal~q~~sveeA~~ali 470 (492)
T KOG1190|consen 452 -RKMALPQLESVEEAIQALI 470 (492)
T ss_pred -cceeecccCChhHhhhhcc
Confidence 2299999999999999874
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.7e-12 Score=114.38 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+..+|-|.||+.++++++|+++|..||.|..|.+.+|+.+ ++|||||.|.+.++|.+||. |+|.-+...-|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6789999999999999999999999999999999999987 69999999999999999998 99999999999999986
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 3
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.7e-12 Score=110.36 Aligned_cols=74 Identities=30% Similarity=0.450 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
.+.|||+||+..+++.+|...|..||.+..|+|...+. |||||+|+++.+|..|+. |+|..|.|..|+|+.+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 57899999999999999999999999999999998765 999999999999999998 999999999999998753
No 55
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.9e-11 Score=119.13 Aligned_cols=162 Identities=20% Similarity=0.268 Sum_probs=115.8
Q ss_pred ccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-----Cce---EEEEEEcCHHHHHHHHH-hCCeEe
Q 019691 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLR---FAFVEFTDEEGARAALS-LAGTML 242 (337)
Q Consensus 172 ~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-----~kg---~aFV~F~~~e~A~~Al~-l~g~~l 242 (337)
.+.+..++.||||+||++++|++|...|..||.+ .|.+...... ++| |+|+.|+++..++..|. +.- .-
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~ 330 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GE 330 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cc
Confidence 3445677889999999999999999999999986 3556533221 466 99999999999998875 321 11
Q ss_pred cccceEEccCCC-----CCCCCC---CCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--
Q 019691 243 GFYPVRVLPSKT-----AIAPVN---PTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-- 312 (337)
Q Consensus 243 ~g~~I~V~~sk~-----~~~~~~---~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-- 312 (337)
....++|.-... .+.+.. ..|. .+....-.+.+||||++||..++.++|..+|+..+|.|..+-|-.|+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 111222221110 011110 0011 11122234679999999999999999999999888999999998884
Q ss_pred CCCceEEEEEeCChHHHHHHHHhc
Q 019691 313 QHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 313 ~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
+-++|-|=|.|.+..+..+||++.
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhhh
Confidence 458999999999999999999875
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=6.7e-12 Score=125.97 Aligned_cols=156 Identities=22% Similarity=0.278 Sum_probs=120.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...+.|+|+|||..+..++|..+|..||.|..+.+. +.+ --++|+|.++.+|+.|+. |....+...++++.|+.
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G--~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG--TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc--ceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 3455789999999999999999999999999998554 321 249999999999999998 99989999999998876
Q ss_pred CCCCCCCCC---C--CC--------------------CCcc--c---------cccccceeeEeCCCCCCCHHHHHHHHh
Q 019691 254 TAIAPVNPT---F--LP--------------------RSED--E---------REMCSRTIYCTNIDKKVTQGDIKLFFE 297 (337)
Q Consensus 254 ~~~~~~~~~---~--~p--------------------~~~~--~---------~~~~~~~l~V~NLp~~~tee~L~~~F~ 297 (337)
..+....|. + .+ .+.+ + ......+|||+||++++|.++|...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 543331111 0 00 0000 0 011123399999999999999999999
Q ss_pred hcCCceEEEEEeccC-C----CCceEEEEEeCChHHHHHHHHh
Q 019691 298 SVCGEVQRLRLLGDY-Q----HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 298 ~~~G~I~~v~i~~d~-~----~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.. |.|.++.|...+ . .+.|||||+|.+.++|+.|+..
T Consensus 538 k~-G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~ 579 (725)
T KOG0110|consen 538 KQ-GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA 579 (725)
T ss_pred hc-CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH
Confidence 96 999999887643 2 2679999999999999999975
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=1.1e-11 Score=89.90 Aligned_cols=71 Identities=42% Similarity=0.617 Sum_probs=65.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
+|||+|||..+++++|+++|..||.|..+.+..++..++++|||+|.+.++|..|+. +++..+.|++|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999988774467999999999999999998 99999999998873
No 58
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2.3e-11 Score=117.62 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCH--HHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE--EGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~--e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....+||||||++.+++++|+.+|..||.|..|.|++.. .+|||||+|.+. .++.+||. |+|..+.|+.|+|..+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET--GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK--GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc--CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 345689999999999999999999999999999999554 499999999987 78999998 9999999999999987
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 63
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.23 E-value=5.3e-11 Score=116.70 Aligned_cols=151 Identities=18% Similarity=0.248 Sum_probs=110.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCC
Q 019691 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (337)
Q Consensus 181 VfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~ 257 (337)
|||+||.+++++++|+.+|+.||.|..|.+.+|..+ ++||+||+|.+.++|++|++ |||..|-|+.|+|..-.....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 999999999999999999999999999999999743 79999999999999999987 999999999999865211000
Q ss_pred CCC--CC-------------------------CCCC-------------------------------Cccccc-------
Q 019691 258 PVN--PT-------------------------FLPR-------------------------------SEDERE------- 272 (337)
Q Consensus 258 ~~~--~~-------------------------~~p~-------------------------------~~~~~~------- 272 (337)
... .. +.+. ......
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 000 00 0000 000001
Q ss_pred cccceeeEeCCC--CCCCH--------HHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNID--KKVTQ--------GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp--~~~te--------e~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+.++.+.|+= ...|+ +|+.+-+.+| |+|..|.+-+.. -|+.||.|.+.+.|..|+.+
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~-g~v~hi~vd~ns---~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH-GKVCHIFVDKNS---AGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc-CCeeEEEEccCC---CceEEEecCcHHHHHHHHHH
Confidence 234556666662 22221 6778888887 999888764432 27999999999999998764
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=5.2e-11 Score=93.12 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+...+-|||.|||.++|.+++.++|.+||.|..|++=..+. .+|.|||.|++..+|.+|+. |+|..+.++.+.|.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 55678999999999999999999999999999999965554 46999999999999999998 9999999999999874
No 61
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=1.1e-10 Score=84.83 Aligned_cols=72 Identities=46% Similarity=0.646 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+|+|+|||..+++++|+++|..+|.|..+.+..++.. ++++|||+|.+.++|..|+. +++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 57999999999999999998 999999999998864
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=106.36 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
.-.+|||++|++.+..+.|+++|++||+|++..++.|+.+ +|||+||.|++.++|.+|++-..-.|.||+..+..+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 3457999999999999999999999999999999999986 799999999999999999985555677777666553
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=2.3e-11 Score=106.01 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
.-.+|.|-||.+.++.++|+.+|++||.|.+|.|..|+.+ ++|||||.|....+|+.|++ |+|.+|.|+.|+|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4468999999999999999999999999999999999987 79999999999999999998 99999999999999876
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 64
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=1.1e-10 Score=84.09 Aligned_cols=68 Identities=40% Similarity=0.594 Sum_probs=61.9
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 183 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 183 V~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
|+|||..+++++|+++|..||.|..+.+..++.+ ++++|||+|.+.++|..|+. +++..+.++.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999999887642 68999999999999999998 99999999998873
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.19 E-value=7.8e-11 Score=86.10 Aligned_cols=57 Identities=23% Similarity=0.433 Sum_probs=53.3
Q ss_pred eeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHHHHh
Q 019691 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 278 l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
|||+|||..+|+++|+++|++| |.|..+.+..+ .+..+++|||+|.+.++|.+|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF-GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT-STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHh-hhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 7999999999999999999996 99999999985 577899999999999999999983
No 66
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.19 E-value=7.2e-11 Score=100.09 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=56.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|.++.++.|. ++++|||||+|.+.++|.+||+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF-GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999874 67899999999999999999973
No 67
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=3.7e-11 Score=98.18 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=69.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.|||.++...+++++|.+.|..||+|..+.+-.|+.+ .+|||+|+|++.++|++|+. +||..|.+++|.|.|+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 4999999999999999999999999999999988876 59999999999999999998 9999999999999996
No 68
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=6.3e-12 Score=107.52 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
-.++.-|||+|||+..||.||.-.|++||+|+.|.+++|+.+ ++||||+.|++..+...|+. |||..+.||.|+|.+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 346788999999999999999999999999999999999987 79999999999999999997 999999999999987
Q ss_pred C
Q 019691 252 S 252 (337)
Q Consensus 252 s 252 (337)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.6e-10 Score=105.75 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.+-+||||+-|+.+++|..|+..|..||.|..|.|+.++.+ ++|||||+|+++.+...|.+ .+|.+|.|+.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999876 79999999999999999998 9999999999988764
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.6e-11 Score=104.50 Aligned_cols=81 Identities=33% Similarity=0.427 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....|||||++|...+++.-|...|-.||.|.+|+++.|..+ ++|||||+|...|+|.+||. |++..|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 346789999999999999999999999999999999998765 79999999999999999998 999999999999999
Q ss_pred CCCC
Q 019691 252 SKTA 255 (337)
Q Consensus 252 sk~~ 255 (337)
++..
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 7654
No 71
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=108.32 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=116.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhc----CCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLT----CGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~----~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
--|.+++||+++++.++.+||.. -|....|.++..+++ ..|-|||.|..+++|+.||..+...++-|.|.+..+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 35777899999999999999962 234456666666554 6899999999999999999888888888888776643
Q ss_pred CC--------------CCCCCCCCC---CCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--EEEecc-CC
Q 019691 254 TA--------------IAPVNPTFL---PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGD-YQ 313 (337)
Q Consensus 254 ~~--------------~~~~~~~~~---p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--v~i~~d-~~ 313 (337)
.+ +........ |+..-.......+|.+++||+..+.++|.++|..|.-.|.. |.+..+ .+
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qG 321 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQG 321 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCC
Confidence 21 111111111 12111222346789999999999999999999998556666 666655 58
Q ss_pred CCceEEEEEeCChHHHHHHHHh
Q 019691 314 HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 314 ~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++.|-|||+|.+.|+|..|..-
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk 343 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQK 343 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHH
Confidence 8999999999999999988764
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=4.3e-10 Score=82.80 Aligned_cols=58 Identities=28% Similarity=0.493 Sum_probs=51.4
Q ss_pred eeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHhc
Q 019691 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 278 l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
|||+|||+.+++++|+++|+.+ |.|..+.+..++ +..+++|||+|.+.++|.+|++..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 7999999999999999999997 999999999874 668999999999999999999863
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=6.3e-10 Score=78.63 Aligned_cols=55 Identities=35% Similarity=0.480 Sum_probs=49.8
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 195 LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 195 L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
|+++|++||.|..+.+..+. +++|||+|.+.++|..|++ |++..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998776 4799999999999999998 9999999999999874
No 74
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.03 E-value=4.7e-10 Score=110.22 Aligned_cols=75 Identities=35% Similarity=0.483 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
++|||||||+++++++|.++|+..|.|.+++++.|+.+ .+||||++|.+.++|..|++ |+|..+.|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 89999999999999999999999999999999999987 69999999999999999998 99999999999999864
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.97 E-value=1.6e-09 Score=99.06 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=54.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+|+++|+++|+. ||+|.+|.|+.+.. .+|||||+|.+.++|..||.+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllL 62 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLL 62 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHh
Confidence 3589999999999999999999987 59999999998854 568999999999999999965
No 76
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.97 E-value=1e-09 Score=94.22 Aligned_cols=148 Identities=20% Similarity=0.325 Sum_probs=101.6
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCC-CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNG-FGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKR-RM 164 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G~r-~~ 164 (337)
.-+-|.|+|-+.+||....+|.++.+....+|+.+.|-.-. .-|.-.....- --+ |++ +.
T Consensus 22 s~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~V------kLY------------grpIrv 83 (203)
T KOG0131|consen 22 SEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMV------KLY------------GRPIRV 83 (203)
T ss_pred HHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHH------Hhc------------CceeEE
Confidence 44779999999999999999999988766655422220000 00000000000 000 111 00
Q ss_pred CCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCe
Q 019691 165 NCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPNS--VLRFAFVEFTDEEGARAALS-LAGT 240 (337)
Q Consensus 165 ~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v-~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~ 240 (337)
+. ...-+..-.....|||+||.+.+++..|++.|+.||.+... ++++++.+ ++|+|||.|++.+.+.+|+. ++|.
T Consensus 84 ~k-as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 84 NK-ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred Ee-cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 11 01111122234789999999999999999999999988663 78888874 68999999999999999998 9999
Q ss_pred EecccceEEccCC
Q 019691 241 MLGFYPVRVLPSK 253 (337)
Q Consensus 241 ~l~g~~I~V~~sk 253 (337)
.+..++|.|.++.
T Consensus 163 ~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 163 YLCNRPITVSYAF 175 (203)
T ss_pred hhcCCceEEEEEE
Confidence 9999999999864
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.4e-09 Score=96.79 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=56.0
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||++|+..+..++|+++|++| |+|+...|+.|+ ++++||+||+|.+.++|.+|++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhc
Confidence 45899999999999999999999998 999999999885 7899999999999999999975
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.7e-08 Score=94.75 Aligned_cols=75 Identities=20% Similarity=0.441 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
-..|||..+.++.+++||+..|+.||+|..|++.+++.+ ++||+||+|.+..+...|+. ||-+.++|+.|+|..+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 347999999999999999999999999999999999875 79999999999999999998 9999999999999664
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=98.93 E-value=4.6e-09 Score=75.82 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=53.7
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+|||+|||..+++++|+++|+++ |.|..+.+..+.+.++++|||+|.+.++|.+|++.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~-g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF-GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999997 99999999887767788999999999999999874
No 80
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=5.5e-09 Score=77.43 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=50.7
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCCC----CCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 192 EEQLATLFL----TCGQVVDCR-ICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 192 ee~L~~~F~----~~G~V~~v~-i~~d~~----~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
+++|+++|+ .||.|.++. ++.++. .++|||||+|.+.++|.+|+. |+|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 655552 368999999999999999998 9999999999976
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=6.8e-09 Score=102.87 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=117.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.....+||++||..+++.++.++...||.+....++.+..+ ++||||.+|.+..-...|+. |+|+.++++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34557999999999999999999999999999999998874 79999999999999999998 9999999999999875
Q ss_pred CCCCCCCCCCC---------CC-CCccccccccceeeEeCCCC--C-CCH-------HHHHHHHhhcCCceEEEEEecc-
Q 019691 253 KTAIAPVNPTF---------LP-RSEDEREMCSRTIYCTNIDK--K-VTQ-------GDIKLFFESVCGEVQRLRLLGD- 311 (337)
Q Consensus 253 k~~~~~~~~~~---------~p-~~~~~~~~~~~~l~V~NLp~--~-~te-------e~L~~~F~~~~G~I~~v~i~~d- 311 (337)
-......++.+ .+ ........+...|.+.|+=. . ..+ |+++.-+.+| |.|..|.+.++
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~-g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF-GAVRSVEIPRPY 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc-CceeEEecCCCC
Confidence 32211111111 11 11111123455666666521 1 133 3344455566 99999999987
Q ss_pred C----CCCceEEEEEeCChHHHHHHHHh
Q 019691 312 Y----QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 312 ~----~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
. .-..|-.||+|.+.+++++|++.
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 2 22677899999999999999874
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=5e-09 Score=94.54 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=54.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhc
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
...+|||+||++.+|+++|+++|+. ||+|.+|+|++|. ...++|||+|++.++|..||.++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcC
Confidence 4589999999999999999999987 5999999999984 45579999999999999999764
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.88 E-value=1.1e-08 Score=99.37 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=113.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~-v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
..-.|-+++||+.||++||.+||+..-.|.. +.++.+... +.|-|||+|++.+.|+.||..+...|+.+-|.|..+..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 4457999999999999999999997655544 556666654 68999999999999999998888888888888866321
Q ss_pred C-----C------CCCCCCC-------------------C----------------C-------------------CCcc
Q 019691 255 A-----I------APVNPTF-------------------L----------------P-------------------RSED 269 (337)
Q Consensus 255 ~-----~------~~~~~~~-------------------~----------------p-------------------~~~~ 269 (337)
. . ......+ . + ....
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 0 0 0000000 0 0 0000
Q ss_pred ----cc----------ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHHHH
Q 019691 270 ----ER----------EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 270 ----~~----------~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
.+ ......++.++||...++.+|.++|+.. ....|.|-.. +++.+|-|+|+|.+.++|..||.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl--~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL--NPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC--CceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 00 0122578889999999999999999864 5567776654 58899999999999999999974
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=4.6e-10 Score=98.78 Aligned_cols=126 Identities=25% Similarity=0.374 Sum_probs=103.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
...|||||.|+...++|+-|.++|-+.|.|..|.|..++.+...||||.|.++-++.-|++ +||..+.+++|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r-- 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR-- 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc--
Confidence 4568999999999999999999999999999999988887754599999999999999999 9999999999877652
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeC----CCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTN----IDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~N----Lp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A 329 (337)
+++ |...++++.+...|+.. |.+..+++..+. +..+.++|+.+-...+.
T Consensus 85 -------------------------~G~shapld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 85 -------------------------CGNSHAPLDERVTEEILYEVFSQA-GPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -------------------------cCCCcchhhhhcchhhheeeeccc-CCCCCccccccccCCccCccchhhhhhhcC
Confidence 222 45567888888899875 899988888774 56677788876544333
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.85 E-value=1.5e-08 Score=95.76 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=109.3
Q ss_pred CCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccC-CCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019691 80 GESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFG-PNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS 158 (337)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ 158 (337)
|+-+.+.++..|.+-|++++.+.++.|..+..+.++-+|.-+.|. +......-.- . ...-
T Consensus 12 Ggisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-------------~--~h~~---- 72 (311)
T KOG4205|consen 12 GGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-------------R--THKL---- 72 (311)
T ss_pred cCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-------------c--cccc----
Confidence 555677799999999999999999999999888777766433331 1111000000 0 0000
Q ss_pred CCCCCCCCCCC-ccc----cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHH
Q 019691 159 QGKRRMNCRTS-NAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGA 231 (337)
Q Consensus 159 ~G~r~~~~r~~-~~~----~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A 231 (337)
.|+.-...+.. +.. ......+.|||++||.+++++++++.|.+||.|..+.++.|..+ ++||+||.|.+++.+
T Consensus 73 dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 73 DGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred CCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 01110000000 000 01114568999999999999999999999999999999988876 689999999999999
Q ss_pred HHHHHhCCeEecccceEEccC
Q 019691 232 RAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 232 ~~Al~l~g~~l~g~~I~V~~s 252 (337)
.+++...-+.|.++.+.|..+
T Consensus 153 dkv~~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 153 DKVTLQKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceecccceeeecCceeeEeec
Confidence 999999899999999999876
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=4.3e-09 Score=97.67 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=57.2
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
....++|||.|||+..-+-||+.+|++| |+|.+|+|+.+...++|||||+|++.+||.+|-+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf-G~VldVEIIfNERGSKGFGFVTmen~~dadRARa 154 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF-GKVLDVEIIFNERGSKGFGFVTMENPADADRARA 154 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh-CceeeEEEEeccCCCCccceEEecChhhHHHHHH
Confidence 3456899999999999999999999998 9999999999887799999999999999999864
No 87
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=5.4e-09 Score=93.52 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=56.5
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...+|.|+||+.++++++|+++|.+| |.|.+|.+.+|. +.++|||||.|.+.++|.+||+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f-g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~ 249 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF-GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIA 249 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc-CccceeEEEEccccCcccceEEEEEecHHHHHHHHH
Confidence 56789999999999999999999997 999999999985 6799999999999999999996
No 88
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.82 E-value=1e-08 Score=104.10 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...+|||||++|+..+++.+|..+|+.||+|.+|.++.. +++|||.+....+|.+||. |....+.++.|+|.|+.
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 346789999999999999999999999999999998655 4799999999999999997 99999999999999974
No 89
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=83.05 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=55.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+.+|||+||+..++|++|.++|++ ||+|..|.+=.|. .++-|||||+|-+.++|..||..
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alry 97 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRY 97 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHH
Confidence 46799999999999999999999998 7999999877774 56889999999999999999864
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.78 E-value=1.2e-07 Score=89.53 Aligned_cols=146 Identities=21% Similarity=0.187 Sum_probs=109.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH---hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS---LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~---l~g~~l~g~~I~V~~ 251 (337)
...+-.|.|++|-..++|.+|.+-.+.||.|..+.++..+ +.|.|+|++.+.|..++. -+...+.|+.--+.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc----ceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 4466789999999999999999999999999888776554 589999999999999985 345567777766666
Q ss_pred CCCCCCCCCCCCCCCCccccccccceee--EeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIY--CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~--V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A 329 (337)
+...... .++ ++...+...|. |-|--+.+|-+-|..++.+. |+|.+|.|++..+- .|.|||++.+.|
T Consensus 104 Stsq~i~-----R~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~-GkVlRIvIfkkngV---QAmVEFdsv~~A 172 (494)
T KOG1456|consen 104 STSQCIE-----RPG--DESATPNKVLLFTILNPQYPITVDVLYTICNPQ-GKVLRIVIFKKNGV---QAMVEFDSVEVA 172 (494)
T ss_pred chhhhhc-----cCC--CCCCCCCeEEEEEeecCccccchhhhhhhcCCC-CceEEEEEEeccce---eeEEeechhHHH
Confidence 5221110 111 11112233333 45666789999999999985 99999999887542 699999999999
Q ss_pred HHHHHh
Q 019691 330 FSWHAC 335 (337)
Q Consensus 330 ~~Ale~ 335 (337)
++|-++
T Consensus 173 qrAk~a 178 (494)
T KOG1456|consen 173 QRAKAA 178 (494)
T ss_pred HHHHhh
Confidence 998653
No 91
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=2e-08 Score=93.85 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=70.9
Q ss_pred ccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH--hCCeEecccceEE
Q 019691 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS--LAGTMLGFYPVRV 249 (337)
Q Consensus 172 ~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~--l~g~~l~g~~I~V 249 (337)
..++...+||||++|-..+++.+|+++|.+||+|.++.+.... +.|||+|.+.++|+.|.+ ++...+.|++|+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3445667899999999999999999999999999999998765 599999999999999985 8888899999999
Q ss_pred ccCCC
Q 019691 250 LPSKT 254 (337)
Q Consensus 250 ~~sk~ 254 (337)
.|++.
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99865
No 92
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.1e-08 Score=92.53 Aligned_cols=82 Identities=22% Similarity=0.436 Sum_probs=75.5
Q ss_pred cccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccce
Q 019691 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPV 247 (337)
Q Consensus 171 ~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I 247 (337)
.+++..+.++|||..||....+.+|..+|-.||.|.+.++..|+.+ +|+|+||.|.++.+|+.||. |||+.|+-++|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 3455667889999999999999999999999999999999998876 79999999999999999998 99999999999
Q ss_pred EEccC
Q 019691 248 RVLPS 252 (337)
Q Consensus 248 ~V~~s 252 (337)
+|...
T Consensus 358 KVQLK 362 (371)
T KOG0146|consen 358 KVQLK 362 (371)
T ss_pred hhhhc
Confidence 99875
No 93
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=1.5e-08 Score=92.74 Aligned_cols=74 Identities=28% Similarity=0.412 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...+.+|+|+||.+.++.++|+..|.+||.|.+|+|+++ |+||+|.-.++|..|++ |++..|.|++++|+.+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 456778999999999999999999999999999999865 99999999999999998 99999999999999864
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 149 s 149 (346)
T KOG0109|consen 149 S 149 (346)
T ss_pred c
Confidence 3
No 94
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-08 Score=93.48 Aligned_cols=175 Identities=18% Similarity=0.283 Sum_probs=113.8
Q ss_pred chhhccCCccchhhHHHHHHHHhccCc--cceeecCC-CCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCC
Q 019691 74 HMERKMGESFKDCEMRDLVDMLSKLNP--MAAEFVPP-SLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTT 150 (337)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~~~p--~a~~~vp~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 150 (337)
..+.-+|.+....++.+-.+.+.|||. +...++|. +.+..+..-+.-+|-.++....+...+.+... .-..|+-
T Consensus 115 nLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPFddpp~l~~p~rspsPt~e-~l~~g~i-- 191 (479)
T KOG0415|consen 115 NLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPFDDPPDLAEPMRSPSPTPE-QLVKGRI-- 191 (479)
T ss_pred cccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCCCCchhhccCCCCCCCCHH-Hhhcccc--
Confidence 345667888889999999999999998 55677773 33444443333334444443333222221100 0000000
Q ss_pred CCCCCCC--CCCCC--------------------CCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE
Q 019691 151 RRKRNGY--SQGKR--------------------RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 208 (337)
Q Consensus 151 ~r~~~~~--~~G~r--------------------~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v 208 (337)
+-.... ..|.. .|-+-...+ ....+...|||..|.+-++.++|.-+|+.||.|.+|
T Consensus 192 -~~de~~d~~~g~saeel~e~~~e~ea~~~A~iLEmvGDlpdA-d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sc 269 (479)
T KOG0415|consen 192 -RLDEDEDDDEGLSAEELEEVLAEKEAKAQAVILEMVGDLPDA-DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSC 269 (479)
T ss_pred -ccCcccccccccCHHHHHHHHHHHHHHhhHhHHHHhcCCccc-ccCCCcceEEEEecCCcccccchhhHHhhcccceee
Confidence 000000 00100 000001111 123356789999999999999999999999999999
Q ss_pred EEecCCCC--CceEEEEEEcCHHHHHHHH-HhCCeEecccceEEccCC
Q 019691 209 RICGDPNS--VLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 209 ~i~~d~~~--~kg~aFV~F~~~e~A~~Al-~l~g~~l~g~~I~V~~sk 253 (337)
.+++|..+ +..||||+|.+.+++++|. +|++..|..+.|.|.++.
T Consensus 270 eVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 270 EVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred eEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 99999887 6899999999999999998 599999999999998753
No 95
>smart00360 RRM RNA recognition motif.
Probab=98.70 E-value=5.5e-08 Score=69.70 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=49.8
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 280 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 280 V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
|+|||..+++++|+++|+++ |.|..+.+..+. +.++++|||+|.+.++|.+|++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF-GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh-CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 57999999999999999997 999999998874 56889999999999999999874
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=5.1e-08 Score=76.51 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=53.4
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...+.|||+|||+++|.++..++|.+| |.|..|+|=... .-+|-|||.|++..+|++|++
T Consensus 16 evnriLyirNLp~~ITseemydlFGky-g~IrQIRiG~~k-~TrGTAFVVYedi~dAk~A~d 75 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKY-GTIRQIRIGNTK-ETRGTAFVVYEDIFDAKKACD 75 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcc-cceEEEEecCcc-CcCceEEEEehHhhhHHHHHH
Confidence 356899999999999999999999998 999999985543 356789999999999999986
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.69 E-value=9.8e-08 Score=69.09 Aligned_cols=58 Identities=28% Similarity=0.460 Sum_probs=52.6
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+|+|+|||..+++++|+++|+.+ |.|..+.+..+. ...+++|||+|.+.++|..|++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~ 59 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEA 59 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 48999999999999999999997 999999998875 35688999999999999999974
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.69 E-value=5.3e-08 Score=92.79 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=109.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCC--eEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g--~~l~g~~I~V~~s 252 (337)
..++.|.++|||.+++|++|..++..||.|..+.+.+.++ .||++|.++++|..-+. +.. -.+.+++|.|+++
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn----QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN----QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch----hhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 4678999999999999999999999999999999887765 89999999999988554 222 2477888888875
Q ss_pred CCCCCC--CCCC----------C-------CCCCc-------cccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEE
Q 019691 253 KTAIAP--VNPT----------F-------LPRSE-------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL 306 (337)
Q Consensus 253 k~~~~~--~~~~----------~-------~p~~~-------~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v 306 (337)
...... ..|. + .+... ......--.+.|.|+-+.++-+-|..+|++| |.|..|
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~f-G~VlKI 180 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKF-GFVLKI 180 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhc-ceeEEE
Confidence 321000 0000 0 01000 0001123466788999999999999999998 999987
Q ss_pred EEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 307 RLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 307 ~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
.-+... ..-.|+|+|.+.+.|..|-.
T Consensus 181 iTF~Kn--n~FQALvQy~d~~sAq~AK~ 206 (492)
T KOG1190|consen 181 ITFTKN--NGFQALVQYTDAVSAQAAKL 206 (492)
T ss_pred EEEecc--cchhhhhhccchhhHHHHHH
Confidence 554432 22368999999999988753
No 99
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=1.1e-07 Score=93.76 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....|+|||++|...+...+|+.+|++||.|+-.+++.+..+ .++|+||.+.+.++|.+||+ |+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 456789999999999999999999999999999999987665 48999999999999999998 999999999999998
Q ss_pred CCCCCC
Q 019691 252 SKTAIA 257 (337)
Q Consensus 252 sk~~~~ 257 (337)
++..+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 775443
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=6.3e-08 Score=88.97 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=58.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHhc
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
.+.+||||.-|+..++|..|+..|+.| |.|+.|.|++| .++++|||||+|++.-+..+|.+.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~Y-G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~a 163 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKY-GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDA 163 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhc-CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhc
Confidence 467999999999999999999999998 99999999999 4889999999999999999987653
No 101
>PLN03213 repressor of silencing 3; Provisional
Probab=98.64 E-value=7.6e-08 Score=93.62 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=53.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCh--HHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMV--SEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~--e~A~~Ale 334 (337)
....+|||+||++.+++++|+.+|..| |.|.+|.|++.++ +|||||+|.+. .++.+||+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF-GsVkdVEIpRETG--RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM-GTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEecccC--CceEEEEecCCcHHHHHHHHH
Confidence 356899999999999999999999998 9999999997666 89999999987 67888876
No 102
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5.5e-08 Score=83.12 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=51.1
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+||+..+++.||..+|..| |.|..|.|... +.|||||||+++.+|..|+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y-G~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~ 66 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY-GPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRY 66 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc-CcceeEEEeec---CCCceEEeccCcccHHHHHhh
Confidence 35899999999999999999999997 99999998874 345999999999988888753
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=2.6e-07 Score=91.83 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=117.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC-----------C-CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEec
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTC-----------G-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLG 243 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~-----------G-~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~ 243 (337)
...+.++|+++|+.++++.+..+|..- | .+..+.+...+ .+||++|.+.++|..|+.+++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~----nfa~ie~~s~~~at~~~~~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK----NFAFIEFRSISEATEAMALDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc----cceeEEecCCCchhhhhcccchhhC
Confidence 345679999999999999999998632 2 36777776665 5999999999999999999999999
Q ss_pred ccceEEccCCCCCCCCCC--------CCCCCCcc-ccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--
Q 019691 244 FYPVRVLPSKTAIAPVNP--------TFLPRSED-EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-- 312 (337)
Q Consensus 244 g~~I~V~~sk~~~~~~~~--------~~~p~~~~-~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-- 312 (337)
|+++++...........- .+.+.... ........+||++||..+++.+++++.+.| |.+....++.+.
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f-g~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF-GPLKAFRLVKDSAT 327 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc-ccchhheeeccccc
Confidence 999887653322111110 01111111 112356789999999999999999999997 999999999884
Q ss_pred CCCceEEEEEeCChHHHHHHHH
Q 019691 313 QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 313 ~~~~g~aFVeF~~~e~A~~Ale 334 (337)
+.++||||.+|.+......|+.
T Consensus 328 g~skg~af~ey~dpsvtd~A~a 349 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIA 349 (500)
T ss_pred ccccceeeeeeeCCcchhhhhc
Confidence 5899999999999877666653
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.58 E-value=1.5e-07 Score=85.17 Aligned_cols=60 Identities=30% Similarity=0.440 Sum_probs=56.5
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+|||+|||..+++++|+++|..+ |.|..+.+..+. +.++|||||+|.+.++|..|++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~-g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~ 176 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF-GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEE 176 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc-CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHH
Confidence 5999999999999999999999997 999999999884 78999999999999999999975
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=1.2e-06 Score=83.00 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=108.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~-v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
+...|..++||+..++.+|..+|...--..- +-++..-.+ ..|.+.|.|.+.|.-+-|++.+...++++.|.|..+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 3445677899999999999999974321111 112222222 24899999999999999999888889999999987543
Q ss_pred CCCCC-CCC-CCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcC---CceEEEEEecc-CCCCceEEEEEeCChHH
Q 019691 255 AIAPV-NPT-FLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC---GEVQRLRLLGD-YQHSTRIAFVEFAMVSE 328 (337)
Q Consensus 255 ~~~~~-~~~-~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~---G~I~~v~i~~d-~~~~~g~aFVeF~~~e~ 328 (337)
..... .+. +....+-..+...-.|.+++||++.++.++.++|.+.| |....|-++.. +++.+|-|||.|...++
T Consensus 139 e~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~ 218 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEED 218 (508)
T ss_pred hhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHH
Confidence 21100 000 00000001112346788999999999999999996432 34555655554 68999999999999999
Q ss_pred HHHHHH
Q 019691 329 PFSWHA 334 (337)
Q Consensus 329 A~~Ale 334 (337)
|+.||.
T Consensus 219 aq~aL~ 224 (508)
T KOG1365|consen 219 AQFALR 224 (508)
T ss_pred HHHHHH
Confidence 999985
No 106
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.51 E-value=1.9e-07 Score=89.76 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=56.9
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+.+||+|||+++.+++|+++|....|+|++|.++.|. ++++|+|.|||+++|.+++|+|-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~ 105 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEK 105 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHH
Confidence 46699999999999999999999888999999999985 89999999999999999999983
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2e-07 Score=76.51 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=57.2
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
......|||+++....|+++|.+.|..| |+|+.+.+-.|. +-.+|||+|+|++.++|++|++.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dy-GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~ 133 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADY-GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDA 133 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhc-ccccceeeccccccccccceeeeehHhHHHHHHHHHh
Confidence 3457899999999999999999999998 999999888774 67899999999999999999975
No 108
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.46 E-value=2.5e-07 Score=81.07 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=56.0
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....|.|-||.+-++.++|+.+|++| |.|-.|.|++|. ..++|||||.|....+|+.||++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekY-G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~da 74 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKY-GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDA 74 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHh-CcccceecccccccccccceeEEEeeecchHHHHHHh
Confidence 56899999999999999999999997 999999999995 56999999999999888888875
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=2.2e-07 Score=80.08 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=51.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||.++-+.+|.++|.+| |.|..|.+....+ .-+||||+|+++.+|..||.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy-g~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY-GRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh-cceEEEEeccCCC-CCCeeEEEecCccchhhhhh
Confidence 45899999999999999999999998 9999998865433 44599999999999999875
No 110
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.44 E-value=6.4e-07 Score=78.56 Aligned_cols=77 Identities=26% Similarity=0.344 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~-G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
....-.+||..+|..+.+.++..+|.++ |.|..+++.+.+.+ ++|||||+|++++.|.-|-+ ||+..|+++-|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4455679999999999999999999988 78888888788766 79999999999999999998 99999999988776
Q ss_pred c
Q 019691 251 P 251 (337)
Q Consensus 251 ~ 251 (337)
.
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 5
No 111
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.37 E-value=1.1e-06 Score=80.21 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+..+.+|+|.|||+.|++++|+++|..||.+..+-+..++.+ +.|.|-|.|...++|..|++ ++++.+.|+++++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344567999999999999999999999999999999999887 78999999999999999998 9999999999888764
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.37 E-value=2.4e-07 Score=87.86 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=114.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-----~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
..|.|.||.+.++.++++.||...|.|.+++|+..... ....|||.|.+...+..|-.|..++|-++-|.|.+.-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 38999999999999999999999999999999875432 3689999999999999999999999988888776532
Q ss_pred CCCCC----------------CC-CC-CCC-------------------C---Cc--cccccccceeeEeCCCCCCCHHH
Q 019691 254 TAIAP----------------VN-PT-FLP-------------------R---SE--DEREMCSRTIYCTNIDKKVTQGD 291 (337)
Q Consensus 254 ~~~~~----------------~~-~~-~~p-------------------~---~~--~~~~~~~~~l~V~NLp~~~tee~ 291 (337)
....+ .. |. .+| . .. ...+...++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 11000 00 00 000 0 00 01123458899999999999999
Q ss_pred HHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 292 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 292 L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.+.|+.+ |+|.+..+.-... .-+|-|+|....+.+.|+.+
T Consensus 168 ~~e~f~r~-Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 168 SGESFERK-GEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhhc-chhhhhhhhccCC--CcchhhhHhhhhhHHHHHHh
Confidence 99999997 9998876654322 22677999888888887764
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=2.6e-07 Score=95.51 Aligned_cols=140 Identities=14% Similarity=0.222 Sum_probs=113.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~-~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+....+|||++||+..+++.+|+..|..+|.|.+|.|-..+. +..-|+||.|.+...+..|.. +.+..|+.-.+++..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345678999999999999999999999999999998865533 345799999999999999875 887776655555444
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~ 331 (337)
... .....+.+++++|++......|...|..| |.|..|.+-.. .-||+|.|++...|+.
T Consensus 448 G~~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f-Gpir~Idy~hg----q~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 448 GQP----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF-GPIRIIDYRHG----QPYAYIQYESPPAAQA 506 (975)
T ss_pred ccc----------------ccccceeeccCCCCCCChHHHHHHHhhcc-CcceeeecccC----CcceeeecccCccchh
Confidence 210 12356899999999999999999999997 99998766443 3399999999999999
Q ss_pred HHH
Q 019691 332 WHA 334 (337)
Q Consensus 332 Ale 334 (337)
|+.
T Consensus 507 a~~ 509 (975)
T KOG0112|consen 507 ATH 509 (975)
T ss_pred hHH
Confidence 876
No 114
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1.6e-06 Score=87.71 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-----~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
+...++|||+||++.++++.|...|..||+|.+++|+.-+.. .+-++||.|-+..+|++|++ |+|..+.+++++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 445678999999999999999999999999999999855432 35689999999999999998 999999999999
Q ss_pred EccCCCCCCCCCC
Q 019691 249 VLPSKTAIAPVNP 261 (337)
Q Consensus 249 V~~sk~~~~~~~~ 261 (337)
+.|++.-..+..+
T Consensus 251 ~gWgk~V~ip~~p 263 (877)
T KOG0151|consen 251 LGWGKAVPIPNIP 263 (877)
T ss_pred eccccccccCCcc
Confidence 9998754443333
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=4.1e-08 Score=100.86 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=104.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~--~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~~ 255 (337)
..++||+||+..+.+.+|...|..+|.+..+++.... ..-+|+||+.|..++++.+|+.+....+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 3469999999999999999999999988777665333 336899999999999999999855433333
Q ss_pred CCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHHH
Q 019691 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Al 333 (337)
...|+|.|.|+..|.++++.++..+ |.+++++++.. .++++|.|+|.|.+..+|.+++
T Consensus 736 -------------------K~~v~i~g~pf~gt~e~~k~l~~~~-gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 736 -------------------KISVAISGPPFQGTKEELKSLASKT-GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred -------------------hhhhheeCCCCCCchHHHHhhcccc-CCccccchhhhhccccccceeccCCCcchhhhhc
Confidence 2678899999999999999999997 99999987765 4889999999999999988765
No 116
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=4.8e-07 Score=89.44 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=65.9
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
..+...++|+|-|||..|++++|+++|+.||+|..|+....+ ++.+||+|-+..+|++|++ |++..+.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 335678999999999999999999999999999998776554 4899999999999999998 999999999888
No 117
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=8.1e-07 Score=87.12 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~--~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
...+|||.|||++++.++|+++|..||.|....|.... ....+||||+|.+.++++.||.-+-..+++++|.|+..+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34459999999999999999999999999988776544 2234999999999999999999888899999999987554
No 118
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.33 E-value=6.6e-07 Score=81.54 Aligned_cols=84 Identities=27% Similarity=0.358 Sum_probs=76.4
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
....+.+.+||+|+...+|.+++...|+.||.|..+.+..++.. ++||+||+|.+.+.+..|+.|++..+.++.|.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34567889999999999999999999999999998889888765 6999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019691 251 PSKTAI 256 (337)
Q Consensus 251 ~sk~~~ 256 (337)
+.++.+
T Consensus 176 ~~r~~~ 181 (231)
T KOG4209|consen 176 LKRTNV 181 (231)
T ss_pred eeeeec
Confidence 977663
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=1.4e-06 Score=78.74 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
++.+.-.||++.|..+++++.|-..|.+|-.....++++++.+ ++||+||.|.+..++..|+. |+|..++.++|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 4556778999999999999999999999998888999999876 79999999999999999997 99999999999887
Q ss_pred cC
Q 019691 251 PS 252 (337)
Q Consensus 251 ~s 252 (337)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 64
No 120
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.8e-07 Score=80.63 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=56.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||++|...+++.-|...|-+| |.|..|.++.|. .+.+|||||+|+..|+|.+||.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPF-GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPF-GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccc-cchhhcccccchhcccccceeEEEeeccchhHHHhh
Confidence 46999999999999999999999997 999999999985 6789999999999999999985
No 121
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=8.4e-08 Score=82.49 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=53.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Al 333 (337)
.+.-|||+|||+.+||-||.-+|++| |+|..|.+++|. ++++||||+.|++..+.+-|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqy-Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAV 94 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQY-GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAV 94 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeecc-CceEEEEEEecCCCCcccceEEEEecCccceEEEE
Confidence 45789999999999999999999998 999999999994 789999999999987766554
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.25 E-value=1.1e-06 Score=82.49 Aligned_cols=154 Identities=22% Similarity=0.164 Sum_probs=112.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcCHHHHHHHHHhCCe-EecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGT-MLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~--~~kg~aFV~F~~~e~A~~Al~l~g~-~l~g~~I~V~~s 252 (337)
....++|++++...+.+.++..++..+|......+..... .++|++++.|...+.+..||.+.+. .+.+..+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3567899999999999998999999999877776655333 3789999999999999999987764 444433322221
Q ss_pred CCCCCCCCCCCCCCCccccccccceee-EeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHH
Q 019691 253 KTAIAPVNPTFLPRSEDEREMCSRTIY-CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 253 k~~~~~~~~~~~p~~~~~~~~~~~~l~-V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A 329 (337)
..... ... .+..... .....++| +.+++..+++++|+..|.. ||.|..++++.+. +.++|||+|.|....++
T Consensus 166 ~~~~~-~~~--n~~~~~~-~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 166 TRRGL-RPK--NKLSRLS-SGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred ccccc-ccc--chhcccc-cCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 11110 000 0010111 12345556 9999999999999988876 5999999998774 56899999999999999
Q ss_pred HHHHH
Q 019691 330 FSWHA 334 (337)
Q Consensus 330 ~~Ale 334 (337)
..|+.
T Consensus 241 ~~~~~ 245 (285)
T KOG4210|consen 241 KLALN 245 (285)
T ss_pred HHHhh
Confidence 99987
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=98.24 E-value=3.1e-06 Score=62.59 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHh----hcCCceEEEE-EeccC----CCCceEEEEEeCChHHHHHHHHh
Q 019691 289 QGDIKLFFE----SVCGEVQRLR-LLGDY----QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 289 ee~L~~~F~----~~~G~I~~v~-i~~d~----~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+++|+++|+ +| |.|.++. +..+. ++++|||||+|.+.++|.+|++.
T Consensus 2 ~~~l~~~~~~~~~~f-G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~ 56 (70)
T smart00361 2 DEDFEREFSEEEEYF-GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVD 56 (70)
T ss_pred chhHHHHHHHHHHhc-CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH
Confidence 578889998 87 9999985 55443 67899999999999999999974
No 124
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.19 E-value=2.5e-06 Score=84.18 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=55.0
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
+.|||+|||+++++++|.++|+.. |.|.++++..|. ++.+||||++|.+.++|..|++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~-g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~ 78 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV-GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIR 78 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc-CccceeeecccccCCCcCceeeEecCchhhHHHHHH
Confidence 899999999999999999999997 999999999884 7899999999999999999986
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.16 E-value=1.3e-05 Score=63.22 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEec----ccceE
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLT--CGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG----FYPVR 248 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~--~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~----g~~I~ 248 (337)
+.||.|+|||...|.++|.+++.. .|...-+.++.|..+ +.|||||.|.+++.|....+ ++|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 468999999999999999998863 356666777777654 68999999999999999987 9988764 24456
Q ss_pred EccCC
Q 019691 249 VLPSK 253 (337)
Q Consensus 249 V~~sk 253 (337)
|.+++
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 126
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.05 E-value=1e-05 Score=56.86 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=34.7
Q ss_pred HHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 292 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 292 L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
|+++|++| |+|..+.+..+. +++|||+|.+.++|.+|++.
T Consensus 1 L~~~f~~f-G~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~ 40 (56)
T PF13893_consen 1 LYKLFSKF-GEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQ 40 (56)
T ss_dssp HHHHHTTT-S-EEEEEEETTS---TTEEEEEESSHHHHHHHHHH
T ss_pred ChHHhCCc-ccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHH
Confidence 68899997 999999998876 46999999999999999973
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.02 E-value=7.5e-06 Score=74.01 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=107.0
Q ss_pred EEEEcCCCCCCcHHH-H--HHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 180 TVYVSDIDQQVTEEQ-L--ATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 180 tVfV~nLp~~vtee~-L--~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
..+++++-..+..+- | ...|+.+-.....+++++... -.+++|+.|.....-.++-. -++.+++..+|++.....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 456666666665544 3 667877777777777777654 57899999988777777765 566666667666654322
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~A 332 (337)
...+. ..+......+|||+.|..+++++-|...|.+| -.....++++|. ++++||+||.|.+..++..|
T Consensus 178 wedPs--------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf-psf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 178 WEDPS--------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF-PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred cCCcc--------cccCccccceeecccccccccHHHHHHHHHhc-cchhhccccccccccccccceeeeecCHHHHHHH
Confidence 11111 11223355899999999999999999999998 777777888884 78999999999999999999
Q ss_pred HH
Q 019691 333 HA 334 (337)
Q Consensus 333 le 334 (337)
+.
T Consensus 249 mr 250 (290)
T KOG0226|consen 249 MR 250 (290)
T ss_pred HH
Confidence 86
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.99 E-value=0.00014 Score=73.98 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V-~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.+.|-+.|+|++++.+||.+||..|-.+ .+|.+.+...+ ..|.|.|.|++.++|++|.. |++..|..+.|++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3589999999999999999999998755 44555554444 68999999999999999987 99999999988875
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=8.7e-06 Score=76.64 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=54.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Al 333 (337)
.+...|||.-|.+-+|+++|.-+|+.| |.|.+|.+++|. +.+..||||+|++.+++.+|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrF-G~i~sceVIRD~ktgdsLqyaFiEFen~escE~Ay 298 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRF-GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAY 298 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhc-ccceeeeEEecccccchhheeeeeecchhhHHHHH
Confidence 356899999999999999999999998 999999999984 568889999999999999884
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.96 E-value=1.5e-05 Score=74.98 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=54.3
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhcC
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACFL 337 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s~ 337 (337)
....+|||++|...+++.+|++.|.+| |+|.++.+....+ +|||+|.+.++|..|.+.++
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqy-Geirsi~~~~~~~----CAFv~ftTR~aAE~Aae~~~ 285 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQY-GEIRSIRILPRKG----CAFVTFTTREAAEKAAEKSF 285 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhc-CCeeeEEeecccc----cceeeehhhHHHHHHHHhhc
Confidence 356899999999999999999999997 9999999987655 99999999999999988653
No 131
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.96 E-value=2.2e-05 Score=69.04 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=55.3
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
.....+|+..+|..+-+..+..+|.++.|.|..+++.++ +|+++|||||+|++.+.|.-|-+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHH
Confidence 356789999999999999999999998889999999776 48899999999999999987755
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.93 E-value=2e-05 Score=79.90 Aligned_cols=158 Identities=12% Similarity=0.009 Sum_probs=111.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
.+...+-+.+.+++....+++++|... .|..+.|..+.-. ..|-++|.|....++++|+.-+...+-.|.+.|.+.-
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 344556678999999999999999742 2444444444332 3689999999999999999988888888998887642
Q ss_pred CCCCCCCCC------------------CCCCCcc-------ccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEE-EE
Q 019691 254 TAIAPVNPT------------------FLPRSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LR 307 (337)
Q Consensus 254 ~~~~~~~~~------------------~~p~~~~-------~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~-v~ 307 (337)
.......+. -.|+... .-......|||..||..+++.++.++|... -.|+. |.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeE
Confidence 211100000 0111111 011346799999999999999999999876 55665 66
Q ss_pred Eecc-CCCCceEEEEEeCChHHHHHHHHh
Q 019691 308 LLGD-YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 308 i~~d-~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
|.+. +++.++-|||.|...+++.+|+.+
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhc
Confidence 6655 366788999999998888888764
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.93 E-value=1.2e-05 Score=78.89 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHhc
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
..+|||+|||.+++..+|+++|..| |.|+...|.... ++..+||||+|.+.++++.||+++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F-G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF-GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc-ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 3559999999999999999999997 999998877643 444489999999999999999875
No 134
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.88 E-value=4.7e-05 Score=57.82 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=46.2
Q ss_pred CEEEEcCCCCCCcHHH----HHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 179 RTVYVSDIDQQVTEEQ----LATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 179 rtVfV~nLp~~vtee~----L~~~F~~~G-~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
..|+|.|||.+.+... |+.++..|| .|..|. .+.|+|.|.+.+.|.+|.+ |+|..+.|..|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 3699999999888765 556777787 565551 2689999999999999998 9999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.81 E-value=3.5e-05 Score=79.07 Aligned_cols=59 Identities=29% Similarity=0.448 Sum_probs=53.8
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+++||||+.|+..+++.||.++|+.| |+|.+|.++...+ +|||.+....+|.+||..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feef-GeiqSi~li~~R~----cAfI~M~~RqdA~kalqk 476 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEF-GEIQSIILIPPRG----CAFIKMVRRQDAEKALQK 476 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhc-ccceeEeeccCCc----eeEEEEeehhHHHHHHHH
Confidence 4578999999999999999999999997 9999999876644 999999999999999874
No 136
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.74 E-value=7.4e-05 Score=66.64 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=51.7
Q ss_pred ceeeEeCCCCCCCHHHHHH----HHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKL----FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~----~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.||||.||...+..++|+. +|++| |+|..|...+. .+.+|.|||.|++.+.|-.|+.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqf-G~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~ 71 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQF-GKILDISAFKT-PKMRGQAFVVFKETEAASAALRA 71 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhh-CCeEEEEecCC-CCccCceEEEecChhHHHHHHHH
Confidence 4999999999999999999 99998 99999987664 56788999999999999998873
No 137
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.68 E-value=9.2e-05 Score=59.35 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=37.2
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..|+|.+++..++.++|++.|++| |.|.+|.+.+... .|+|.|.+.+.|++|++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~-g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF-GEVAYVDFSRGDT----EGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT-S----EEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc-CCcceEEecCCCC----EEEEEECCcchHHHHHHH
Confidence 468899999999999999999997 9999999988655 699999999999999875
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00024 Score=56.02 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=49.2
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhc-CCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESV-CGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~-~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
+||.|+|||...|.++|.+++... .|....+.++.|. ..+.|||||.|.+++.|.+-.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~ 63 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYK 63 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHH
Confidence 689999999999999999988765 3566777777773 5689999999999999986543
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.00011 Score=73.11 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=55.1
Q ss_pred CCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 266 RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 266 ~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+.+.....++|+|.|||..+++++|+.+|+.| |+|..|+.-+ ..+|..||+|-+..+|++||++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~y-Geir~ir~t~---~~~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAY-GEIREIRETP---NKRGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhh-cchhhhhccc---ccCceEEEEEeehHhHHHHHHH
Confidence 3344556788999999999999999999999998 9999965443 3456899999999999999874
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.55 E-value=0.00018 Score=65.76 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=55.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|+|.|||..++++||+++|+.| |.+..+-+..+. +.+.|.|-|.|...++|.+|++-
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~-~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEF-GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHh-ccceEEeeccCCCCCCCccceeeecchHhHHHHHHH
Confidence 34889999999999999999999998 899999998885 78999999999999999999863
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=7.7e-06 Score=84.52 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=116.1
Q ss_pred CCCCEEEEcCCCCCCcHH-HHHHHhhcCCCeeEEEEecCC-CCC-ceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEE-QLATLFLTCGQVVDCRICGDP-NSV-LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee-~L~~~F~~~G~V~~v~i~~d~-~~~-kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
...+...+.++.+..... ..+..|..+|.|..|++.... ..+ ..++++.+....+++.|....+.-+.++.+.|..+
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCC
Confidence 345567888888877776 577889999999999887632 222 23889999999999999988888888888887776
Q ss_pred CCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEe--ccCCCCceEEEEEeCChHHHH
Q 019691 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL--GDYQHSTRIAFVEFAMVSEPF 330 (337)
Q Consensus 253 k~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~--~d~~~~~g~aFVeF~~~e~A~ 330 (337)
........+...|... ....++|++||+..+.+++|...|..+ |.+..+.+. .+.+.-+|+||++|..++++.
T Consensus 649 d~~~~~~~~kvs~n~~----R~~~~~fvsnl~~~~~~~dl~~~~~~~-~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEI----RDLIKIFVSNLSPKMSEEDLSERFSPS-GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred CchhhhhccCcCchHH----HHHHHHHHhhcchhhcCchhhhhcCcc-chhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 4333222222222211 234789999999999999999999987 766665444 456778999999999999999
Q ss_pred HHHHh
Q 019691 331 SWHAC 335 (337)
Q Consensus 331 ~Ale~ 335 (337)
+||..
T Consensus 724 aaV~f 728 (881)
T KOG0128|consen 724 AAVAF 728 (881)
T ss_pred hhhhh
Confidence 99863
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.49 E-value=0.00037 Score=55.85 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~ 236 (337)
.|+|.+++..++.++|++.|+.||.|..|.+..... .|||.|.++++|+.|+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHH
Confidence 588999999999999999999999999998876543 89999999999999986
No 143
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00053 Score=65.04 Aligned_cols=79 Identities=25% Similarity=0.347 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEec
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG 243 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~--------v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~ 243 (337)
....-+|||-+||..+++.+|.++|.+||.|.. |++.+++.+ .|+-|.|.|.++..|+.|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445678999999999999999999999998743 566677766 69999999999999999998 9999999
Q ss_pred ccceEEccCC
Q 019691 244 FYPVRVLPSK 253 (337)
Q Consensus 244 g~~I~V~~sk 253 (337)
+..|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999998753
No 144
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.40 E-value=0.00033 Score=69.81 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=56.0
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||.+|...+-..+|+.+|++| |+|+-.+++.+. ...++|+||++.+.++|.++|+-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKy-GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKY-GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHh-cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHH
Confidence 4567899999999999999999999998 999999998874 33688999999999999999973
No 145
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.37 E-value=0.00049 Score=48.09 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHH
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al 235 (337)
+.|-|.+.+++..+ .+..+|..||+|..+.+.... ...+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 57889999977664 556689999999998886333 48999999999999985
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.37 E-value=3e-05 Score=74.57 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=97.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCe-EecccceEEccCCCCCC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT-MLGFYPVRVLPSKTAIA 257 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~-~l~g~~I~V~~sk~~~~ 257 (337)
.+|++||.+.++..+|..+|...---.+-.++.. .||+||.+.+...|.+|++ ++|. .+.|+++.|.++-
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv---- 74 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV---- 74 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh----
Confidence 5899999999999999999974311111111111 3899999999999999998 8774 5889998888752
Q ss_pred CCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHHHH
Q 019691 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 258 ~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
|. ...++.+-|.|+|+...++.|..+...| |.+..|..... ... -..-|+|...+.++.||.
T Consensus 75 -------~k-----kqrsrk~Qirnippql~wevld~Ll~qy-g~ve~~eqvnt~~et--avvnvty~~~~~~~~ai~ 137 (584)
T KOG2193|consen 75 -------PK-----KQRSRKIQIRNIPPQLQWEVLDSLLAQY-GTVENCEQVNTDSET--AVVNVTYSAQQQHRQAIH 137 (584)
T ss_pred -------hH-----HHHhhhhhHhcCCHHHHHHHHHHHHhcc-CCHhHhhhhccchHH--HHHHHHHHHHHHHHHHHH
Confidence 11 1234678999999999999999999997 99999876432 221 122356777777777764
No 147
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.33 E-value=0.00025 Score=63.28 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=51.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEe
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML 242 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l 242 (337)
-||||.||.+++||++|+.+|+.|-....++|... . ....||++|++.+.|..||. |.|..+
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~-g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G-GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C-CcceEeecHHHHHHHHHHHHHhhccee
Confidence 37999999999999999999999987666665322 2 34699999999999999996 888654
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.28 E-value=0.00028 Score=64.42 Aligned_cols=63 Identities=30% Similarity=0.423 Sum_probs=56.5
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....+.+||+|+...+|.+++...|+. ||.|..+.++.|+ ++++|||||+|.+.+.+..|+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l 162 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKL 162 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhc
Confidence 446789999999999999999999987 8999999999885 56899999999999999999873
No 149
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.10 E-value=0.0026 Score=50.40 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EecC-------C-CCCceEEEEEEcCHHHHHHHHHhCCeEeccc-c
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-ICGD-------P-NSVLRFAFVEFTDEEGARAALSLAGTMLGFY-P 246 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~-i~~d-------~-~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~-~ 246 (337)
..+.|.|-+.|+. ....|.+.|++||.|.+.. +.++ + ......-.|.|.++.+|.+||..||..+.|. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4456899999988 5567888999999998774 1111 0 0123588999999999999999999999885 4
Q ss_pred eEEccC
Q 019691 247 VRVLPS 252 (337)
Q Consensus 247 I~V~~s 252 (337)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 556664
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.10 E-value=0.00033 Score=62.33 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=53.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||.|+...++++.|.++|-+. |.|..|.|..+. ++.+ ||||.|.+.-+..-|+++
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiqa-GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQA-GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhcc-CceEEEeCCCCccCCCc-eeeeecccccchhhhhhh
Confidence 34899999999999999999999985 999999998875 4455 999999999999999875
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.03 E-value=0.0017 Score=45.32 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=41.3
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
+.|-|.+.++...+. +...|..+ |+|..+.+..... +.+|.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~f-GeI~~~~~~~~~~----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASF-GEIVDIYVPESTN----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhc-CCEEEEEcCCCCc----EEEEEECCHHHHHhhC
Confidence 567888998776654 55577775 9999988863333 8999999999999996
No 152
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.98 E-value=0.00051 Score=61.64 Aligned_cols=71 Identities=28% Similarity=0.368 Sum_probs=61.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
......+.|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|.+.++|..|+. |++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 345567999999999999999999999999855444 23699999999999999998 999999999999944
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.92 E-value=0.0019 Score=60.79 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=59.3
Q ss_pred EEEEcCCCCCCcHHHH------HHHhhcCCCeeEEEEecCCCC---CceEE--EEEEcCHHHHHHHHH-hCCeEecccce
Q 019691 180 TVYVSDIDQQVTEEQL------ATLFLTCGQVVDCRICGDPNS---VLRFA--FVEFTDEEGARAALS-LAGTMLGFYPV 247 (337)
Q Consensus 180 tVfV~nLp~~vtee~L------~~~F~~~G~V~~v~i~~d~~~---~kg~a--FV~F~~~e~A~~Al~-l~g~~l~g~~I 247 (337)
-+||-+||+.+-.+++ .++|.+||.|..|.+-+.... ..+.+ ||.|.+.++|.+||. .+|..+.||-|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4899999998877762 478999999988877554422 12333 999999999999997 99999999999
Q ss_pred EEccCC
Q 019691 248 RVLPSK 253 (337)
Q Consensus 248 ~V~~sk 253 (337)
+..+..
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 987753
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.83 E-value=0.0019 Score=58.74 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=71.9
Q ss_pred HHHHHHH-hCCeEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEE
Q 019691 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308 (337)
Q Consensus 230 ~A~~Al~-l~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i 308 (337)
-|..|.. |++....++.++|.++ ....|||.||..-++.+.+..-|+.| |.|..-.+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa---------------------~~a~l~V~nl~~~~sndll~~~f~~f-g~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFA---------------------MHAELYVVNLMQGASNDLLEQAFRRF-GPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEee---------------------ccceEEEEecchhhhhHHHHHhhhhc-Cccchhee
Confidence 3455554 9999999999999985 22789999999999999999999997 99998655
Q ss_pred ecc-CCCCceEEEEEeCChHHHHHHHHhc
Q 019691 309 LGD-YQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 309 ~~d-~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
.-| .++.++-++|+|...-.|.+|+..|
T Consensus 64 ~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 64 KVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eecccccccccchhhhhcchhHHHHHHHh
Confidence 555 5788889999999999999998876
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.82 E-value=0.0018 Score=62.82 Aligned_cols=69 Identities=29% Similarity=0.472 Sum_probs=57.8
Q ss_pred ccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecC---CCC------------CceEEEEEEcCHHHHHHH
Q 019691 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD---PNS------------VLRFAFVEFTDEEGARAA 234 (337)
Q Consensus 170 ~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d---~~~------------~kg~aFV~F~~~e~A~~A 234 (337)
..+.++..+|+|.+.|||.+-.-+.|.++|..+|.|..|+|+.- +.. .+-+|+|+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 34445578999999999999999999999999999999999876 221 145799999999999999
Q ss_pred HHhC
Q 019691 235 LSLA 238 (337)
Q Consensus 235 l~l~ 238 (337)
.++.
T Consensus 303 ~e~~ 306 (484)
T KOG1855|consen 303 RELL 306 (484)
T ss_pred HHhh
Confidence 9843
No 156
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.76 E-value=0.0032 Score=59.56 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=53.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--------EEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--------v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....|||.|||.++|.+++.++|++ ||.|.. |++.++. |+-+|-|.|.|-..+++.-|+++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~i 202 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKI 202 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHH
Confidence 4567999999999999999999998 697764 7888874 88999999999999999998875
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.68 E-value=0.0015 Score=61.56 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=67.0
Q ss_pred CCCEEE-EcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 177 IRRTVY-VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVf-V~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
...++| |++|+..+++++|+.+|..+|.|..+++..++.+ .+|+|||.|.....+..++......+.++++.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 445666 9999999999999999999999999999888776 5899999999999999988666778889999988753
No 158
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.007 Score=60.06 Aligned_cols=62 Identities=29% Similarity=0.357 Sum_probs=56.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCC-C-CceEEEEEEcCHHHHHHHHHh
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPN-S-VLRFAFVEFTDEEGARAALSL 237 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~-~~G~V~~v~i~~d~~-~-~kg~aFV~F~~~e~A~~Al~l 237 (337)
..+||||||+||.-++.++|..+|. -||.|..+-|-.|+. . ++|-|=|.|.+..+-.+||+.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4689999999999999999999998 899999999988854 3 789999999999999999963
No 159
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.52 E-value=0.004 Score=63.84 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=54.4
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-----CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-----~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||+||+++++++.|...|..| |.|..++|+... ...+-++||-|-+..+|.+|+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf-gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF-GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc-CcccceeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence 4467899999999999999999999997 999999998652 23455999999999999999864
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.17 E-value=0.0028 Score=57.66 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC----------C----ceEEEEEEcCHHHHHHHHH-hCCeEe
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----------V----LRFAFVEFTDEEGARAALS-LAGTML 242 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~----------~----kg~aFV~F~~~e~A~~Al~-l~g~~l 242 (337)
.-.||+++||+.+...-|+++|..||.|-.|.+.....+ + -.-|.|+|.+...|..+.. ||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 346999999999999999999999999999988654322 1 1246799999999999876 999999
Q ss_pred cccc
Q 019691 243 GFYP 246 (337)
Q Consensus 243 ~g~~ 246 (337)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.12 E-value=0.019 Score=48.42 Aligned_cols=70 Identities=31% Similarity=0.371 Sum_probs=53.1
Q ss_pred CCCEEEEcCCC------CCCcH---HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccce
Q 019691 177 IRRTVYVSDID------QQVTE---EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 247 (337)
Q Consensus 177 ~~rtVfV~nLp------~~vte---e~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I 247 (337)
+..||.|.=+. ....+ .+|.+.|..||++.-+++..+ .-+|.|.+.+.|.+|+.++|..+.|+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l 99 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTL 99 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEE
Confidence 34577776554 12332 367778899999998888865 3699999999999999999999999999
Q ss_pred EEccC
Q 019691 248 RVLPS 252 (337)
Q Consensus 248 ~V~~s 252 (337)
+|...
T Consensus 100 ~i~LK 104 (146)
T PF08952_consen 100 KIRLK 104 (146)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 99873
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.024 Score=56.94 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=59.4
Q ss_pred CCCCEEEEcCCCCCCc--HH----HHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecc-cc
Q 019691 176 VIRRTVYVSDIDQQVT--EE----QLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGF-YP 246 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vt--ee----~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g-~~ 246 (337)
.....|+|-|+|.--. .+ -|..+|+++|+|..+.++.+..+ .+||.|++|.+..+|..|++ |||..|.- +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4556899999985322 22 35678999999999999877765 79999999999999999998 99988754 45
Q ss_pred eEEcc
Q 019691 247 VRVLP 251 (337)
Q Consensus 247 I~V~~ 251 (337)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55543
No 163
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=95.96 E-value=0.002 Score=34.50 Aligned_cols=17 Identities=65% Similarity=0.782 Sum_probs=13.0
Q ss_pred HHhccCccceeecCCCC
Q 019691 94 MLSKLNPMAAEFVPPSL 110 (337)
Q Consensus 94 ~~~~~~p~a~~~vp~~~ 110 (337)
+.++|||.|+||||++.
T Consensus 2 ~~s~LNp~A~eFvP~~~ 18 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSSK 18 (18)
T ss_dssp -SSSSSTTSSSS-TTTT
T ss_pred cccccCCCCccccCCCC
Confidence 45799999999999863
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.87 E-value=0.0087 Score=58.16 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=54.0
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---CC----CC--------ceEEEEEeCChHHHHHHHHhc
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQ----HS--------TRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~~----~~--------~g~aFVeF~~~e~A~~Ale~s 336 (337)
+...++|.+.|||.+-.-+-|.++|..+ |.|..|+|+.. .. .+ +-+|+|+|+..+.|.+|.+..
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~-G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTV-GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcc-cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4578999999999999999999999985 99999999876 21 11 337999999999999998753
No 165
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.66 E-value=0.06 Score=41.04 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=41.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~ 238 (337)
.....+|+ +|..+...||.++|+.||.| .|.++.|. -|||.....+.|..++. +.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 34456666 99999999999999999997 46666664 69999999999999987 44
No 166
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.62 E-value=0.072 Score=38.39 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=46.2
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G--~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...|+|.+++ .++.++|+.+|..||. ...+|..+.|.. |-|-|.+.+.|.+||.+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-----cNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-----CNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-----EEEEECCHHHHHHHHHc
Confidence 3689999997 5888999999998843 567888888765 88999999999999974
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.52 E-value=0.0064 Score=55.45 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=48.6
Q ss_pred HHHHHhh-cCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 194 QLATLFL-TCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 194 ~L~~~F~-~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+|...|. +||+|..+.++..-.. -.|-+||.|..+++|++|+. |++..+.|++|....+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444445 9999999988765543 36889999999999999998 9999999999988764
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.27 E-value=0.018 Score=54.58 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G--~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
+..+||+||-+.+|++||.+.....| .+.++++..++.. +||||+|...+..+..+.|+ |....+.|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 45799999999999999999988776 6677888766643 79999999999999999998 88888888765553
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.11 E-value=0.031 Score=58.92 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=64.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecc--cceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~s 252 (337)
...+.+|+++|++.+....|...|..||.|..|.+-... -||+|.|++...++.|++ +.|..|++ ++|+|.++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 456789999999999999999999999999887663332 599999999999999998 99999987 67888876
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
...
T Consensus 529 ~~~ 531 (975)
T KOG0112|consen 529 SPP 531 (975)
T ss_pred cCC
Confidence 543
No 170
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.94 E-value=0.017 Score=56.78 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQV-TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~v-tee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
+.+.|-+.-.|+.. +.++|...|.+||.|..|.+-... -.|.|.|.+..+|-.|...++..|.++.|+|.|-.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEec
Confidence 44566666677665 448899999999999999885553 37999999999999999999999999999999954
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.83 E-value=0.074 Score=49.52 Aligned_cols=59 Identities=25% Similarity=0.201 Sum_probs=49.2
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCC---ceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 193 EQLATLFLTCGQVVDCRICGDPNSV---LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 193 e~L~~~F~~~G~V~~v~i~~d~~~~---kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+++++-+.+||.|..|.|...+... .---||+|...++|.+|+- |||..|+|+.++.++
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4677788999999999888776542 2346999999999999986 999999999988765
No 172
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.34 E-value=0.18 Score=38.61 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=33.7
Q ss_pred ceeeEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 276 RTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..|+|.|||...+...|+ .++....|+|..|. .+.|+|.|.+.+.|.+|+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~K 57 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQK 57 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHH
Confidence 579999999988887655 45556445787762 1369999999999999975
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.30 E-value=0.16 Score=38.69 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=37.9
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...||+ .|..+...||.++|++| |.|. |..+.|. -|||.....+.|..|+.+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf-G~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF-GQIY-VSWINDT-----SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC-CCEE-EEEECTT-----EEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccC-CcEE-EEEEcCC-----cEEEEeecHHHHHHHHHH
Confidence 445555 99999999999999997 8764 4555554 499999999999988875
No 174
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.87 E-value=0.078 Score=50.63 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=51.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--------EEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--------v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||.+||..+++.+|.++|.+ ||.|.. |.|.++ +..+++-|.|.|++...|+.|++.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 4579999999999999999999987 687764 444444 356899999999999999999874
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.83 E-value=0.062 Score=41.52 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=47.9
Q ss_pred EEEEEcCHHHHHHHHHh--CCeEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHh
Q 019691 221 AFVEFTDEEGARAALSL--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (337)
Q Consensus 221 aFV~F~~~e~A~~Al~l--~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 297 (337)
|+|.|.++.-|++.+++ +...+.+..+.|..+...... ..+-+-......++|.|+|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~-----~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGH-----LQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCC-----ceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999974 445566666655543111100 0011111234679999999999999999998764
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.11 Score=52.35 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=49.5
Q ss_pred ccceeeEeCCCCCC------CHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~------tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....|.|-|+|--- -+.-|.++|+++ |+|..+.++.+. +..+||.|++|++..+|+.|+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~-gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKA-GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhh-ccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 44788889988521 223477899997 999999999774 67999999999999999999874
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.55 E-value=0.47 Score=34.18 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=43.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcC---CCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTC---GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~---G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~ 236 (337)
..|+|.++. +++.++|+.+|..| .....|.++-|. -|=|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 479999995 58889999999988 134578888775 48899999999999985
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.38 E-value=0.23 Score=39.32 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=38.6
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEE-Eecc-------C-CCCceEEEEEeCChHHHHHHHH
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGD-------Y-QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~-i~~d-------~-~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..-|.|-+.|+. ....|.+.|+++ |.|.... +.++ + .....+-.|+|+++.+|.+||.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~-G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~ 72 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSF-GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ 72 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCC-S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhc-ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH
Confidence 466889999987 556788889886 9998764 1111 0 1123389999999999999996
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.36 E-value=0.057 Score=54.65 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEe---cccceEEc
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML---GFYPVRVL 250 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~-~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l---~g~~I~V~ 250 (337)
..+..|||.||=.-+|.-+|++++. .+|.|.+.+|-+- +..|||.|.+.++|.+-.. |+|..+ +.+.|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3556799999999999999999999 6777777744222 3589999999999999887 999876 34566655
Q ss_pred c
Q 019691 251 P 251 (337)
Q Consensus 251 ~ 251 (337)
+
T Consensus 518 f 518 (718)
T KOG2416|consen 518 F 518 (718)
T ss_pred e
Confidence 4
No 180
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.31 E-value=0.081 Score=51.09 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=50.4
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC-----CCceEEEEEeCChHHHHHHHHhc
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~-----~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
..|.|.||.+.+|.++++.+|..+ |+|..+.|+.... .....|||.|.+..++..|-.++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l-GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL-GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc-cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc
Confidence 489999999999999999999876 9999999987422 24569999999999888776553
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.08 E-value=0.89 Score=36.67 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=48.7
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecc
Q 019691 177 IRRTVYVSDIDQQ-VTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (337)
Q Consensus 177 ~~rtVfV~nLp~~-vtee~L~~~F~~~G-~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g 244 (337)
...+|.|--.|+. ++.++|..+...+- .|..++|+++...++-.++++|.+.++|..... +||..|..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344555555555 45456655555443 567889998877677889999999999999987 99987654
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.50 E-value=0.19 Score=43.97 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=44.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-CCCe---eEEEEecCCCC----CceEEEEEEcCHHHHHHHHH-hCCeEeccc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLT-CGQV---VDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~-~G~V---~~v~i~~d~~~----~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~ 245 (337)
....|.|+.||+.+|++++.+.+.. ++.. ..+.-...... ...-|||.|.+.+++..... ++|..|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4558999999999999999997776 6655 23321122211 24679999999999888887 999887553
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.05 E-value=0.5 Score=46.58 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=60.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~-G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g 244 (337)
+...+.|.|--+|..++-.||..|...+ -.|..+++++|...++-..+|.|.+.++|....+ +||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3347899999999999999999998754 4789999999776677788999999999999997 99988755
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.53 E-value=0.95 Score=45.82 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=47.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhh-cCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~-~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+.|.|+-||..+..|+++.+|.. -|.++++|.+-.+++ =||+|++..||+.|..+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAyky 231 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKY 231 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHH
Confidence 3467778999999999999999963 367899999877655 49999999999999764
No 185
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.34 E-value=0.91 Score=42.66 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=51.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEeccc-ceEEcc
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY-PVRVLP 251 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~-~I~V~~ 251 (337)
=|-|-++|+.-. ..|..+|.+||.|+++.....- .+-+|.|.+.-+|++||..+|..|.+. .|-|.+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 366778887543 4577899999999887665322 388999999999999999999988774 455555
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.20 E-value=0.54 Score=47.49 Aligned_cols=69 Identities=22% Similarity=0.397 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh--cCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCC--eEecccceEEc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFL--TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVL 250 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~--~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g--~~l~g~~I~V~ 250 (337)
.++.|.++-||..+.+++++.||+ .|-.+.+|.+....+ =||.|++..||+.|.+ |.. ..|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 345677899999999999999997 588889998876653 4899999999999986 432 45778877443
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.16 E-value=0.22 Score=45.59 Aligned_cols=73 Identities=27% Similarity=0.325 Sum_probs=57.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcCHHHHHHHHH-hC--C--eEecccceEEcc
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LA--G--TMLGFYPVRVLP 251 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~-~~kg~aFV~F~~~e~A~~Al~-l~--g--~~l~g~~I~V~~ 251 (337)
..|||.||++-++.+.|..-|+.||+|....++-|.. ...+-++|.|...-.|.+|+. +. + ....+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6899999999999999999999999997766655544 367899999999999999986 42 2 223445555554
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.99 E-value=0.071 Score=50.53 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEecCCC--C---CceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 178 RRTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN--S---VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~---~~F~~~G~V~~v~i~~d~~--~---~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
+.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. . ...-++|.|...++|..||. .+|+.+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3558999999877665544 4789999999998888762 1 23458999999999999998 999999998877
Q ss_pred EccC
Q 019691 249 VLPS 252 (337)
Q Consensus 249 V~~s 252 (337)
....
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 6654
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.64 E-value=0.55 Score=48.31 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
..-+|||+|+...+..+-++.+...||.|.+++... |+|.+|.....+.+|+. ++...+.+..+.+......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 456899999999999999999999999998775542 99999999999999997 7777777877766552111
Q ss_pred CC----------CCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHh
Q 019691 256 IA----------PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (337)
Q Consensus 256 ~~----------~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 297 (337)
+. .....|.|.+. .+-..|.|+|..+.+......+.
T Consensus 112 ~~n~~k~~~~~~~~~~~f~p~~s------rr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 112 IENADKEKSIANKESHKFVPSSS------RRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hcCccccccchhhhhcccCCchh------HHHHHhhccccchhHHHHHHHHh
Confidence 10 01111233222 46677888887777766666654
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.55 E-value=1.1 Score=37.64 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCCCCEEEEcCCCCCCcH-HH---HHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 175 EVIRRTVYVSDIDQQVTE-EQ---LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vte-e~---L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
+..-.||.|+=|..++.. +| +...++.||+|.+|.++... -|.|.|++..+|-.|+. +.. ...|..+..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 445678999876665533 34 44556799999999887653 69999999999999997 443 445566666
Q ss_pred cc
Q 019691 250 LP 251 (337)
Q Consensus 250 ~~ 251 (337)
.|
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 65
No 191
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.54 E-value=0.47 Score=45.14 Aligned_cols=61 Identities=13% Similarity=0.297 Sum_probs=46.3
Q ss_pred ccceeeEeCCCCCCCHHHH------HHHHhhcCCceEEEEEeccC--CCC-ce-E-EEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDI------KLFFESVCGEVQRLRLLGDY--QHS-TR-I-AFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L------~~~F~~~~G~I~~v~i~~d~--~~~-~g-~-aFVeF~~~e~A~~Ale~ 335 (337)
...-+||-+|++.+..+++ .++|.+| |.|..|.+-+.. ..+ .+ + .||+|.+.|+|.+||..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQy-GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~ 184 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQY-GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE 184 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhc-cceeEEEecccccccccccccceEEEEecchHHHHHHHHH
Confidence 3477999999998888772 4589997 999999887653 111 11 2 39999999999998863
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=90.22 E-value=0.24 Score=47.18 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=50.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G--~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....+||+||-..+|++||.+.+... | .+..++++-+ .+.++|||+|-..+..+.++-|++
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh
Confidence 45789999999999999999999876 6 5666777655 478999999999998888887764
No 193
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=89.54 E-value=0.25 Score=50.17 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=48.9
Q ss_pred cccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 271 ~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+...+..|||.||-..+|.-+|+.++..-||.|... ..|.-+ ..|||.|.+.++|.....+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIK--ShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIK--SHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhh--cceeEecccHHHHHHHHHH
Confidence 345778999999999999999999999888888877 334322 2599999999999876543
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.95 E-value=2.2 Score=31.13 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=42.5
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 189 QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 189 ~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
.++-++++..+..|+- .+|..++. || ||.|.+..+|+++.. .++..+....+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t---Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT---GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC---EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778899999999974 34445554 54 899999999999998 8998888777654
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.00 E-value=0.83 Score=38.46 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=41.3
Q ss_pred cccceeeEe----CCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhc
Q 019691 273 MCSRTIYCT----NIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 273 ~~~~~l~V~----NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
.+..+|.|. |+.+.-+-..+...++.| |.|.+|...... -|.|.|++..+|.+|+.+-
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~f-GpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af 145 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF-GPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAF 145 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhc-CCcceeeecCCc-----eEEEEehhhHHHHHHHHhh
Confidence 355677775 444433444455556666 999999876543 4999999999999999863
No 196
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.65 E-value=23 Score=33.35 Aligned_cols=161 Identities=12% Similarity=0.120 Sum_probs=96.1
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC---------CCceEEEEEEcCHHHHHHHHH-----hC
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---------SVLRFAFVEFTDEEGARAALS-----LA 238 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~---------~~kg~aFV~F~~~e~A~~Al~-----l~ 238 (337)
.++-..|.|...|+..+++--.+...|.+||+|++|.++.+.. +...-..+.|-+.+.+..... |.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3444678899999999999888889999999999999987661 135678899999888775541 22
Q ss_pred C--eEecccceEEccCC-----CCCCCC-CCCC---C-C--CCccccccccceeeEeCCCCCC-CHHHHHHHHhhc---C
Q 019691 239 G--TMLGFYPVRVLPSK-----TAIAPV-NPTF---L-P--RSEDEREMCSRTIYCTNIDKKV-TQGDIKLFFESV---C 300 (337)
Q Consensus 239 g--~~l~g~~I~V~~sk-----~~~~~~-~~~~---~-p--~~~~~~~~~~~~l~V~NLp~~~-tee~L~~~F~~~---~ 300 (337)
. ..+....|.|..-. ...... .+.+ . + ...-......|.|.|.=- ..+ +++-+.+.+. | -
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~-fL~~~ 167 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLP-FLKNS 167 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhh-hhccC
Confidence 2 23445555554321 110000 0001 0 0 000001234567776533 344 3333333331 1 1
Q ss_pred C----ceEEEEEeccC----CCCceEEEEEeCChHHHHHHHHh
Q 019691 301 G----EVQRLRLLGDY----QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 301 G----~I~~v~i~~d~----~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+ -|++|.++... .-+..||.+.|-+..-|...++.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dY 210 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDY 210 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHH
Confidence 2 36677777643 23677999999999988887763
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.63 E-value=3.2 Score=33.49 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=42.1
Q ss_pred ceee-EeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 276 RTIY-CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 276 ~~l~-V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
..+. +...|..++-++|..+.+.+...|..++|++|....+-.+.++|.+.++|..=
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~F 70 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEF 70 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHH
Confidence 4444 44445556666777777766667889999998766787999999999998753
No 198
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=86.89 E-value=0.36 Score=44.24 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC----------CCc----eEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ----------HST----RIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~----------~~~----g~aFVeF~~~e~A~~Ale 334 (337)
....||+++||+.+....|+++|+.| |.|-+|.+.+... ... .-|.|+|.+...|.+..+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~y-GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe 146 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQY-GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE 146 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhc-cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999997 9999998876421 111 146789998888887654
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.78 E-value=1.9 Score=38.08 Aligned_cols=59 Identities=27% Similarity=0.193 Sum_probs=44.2
Q ss_pred cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hC--CeEecccceEEccCC
Q 019691 191 TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSK 253 (337)
Q Consensus 191 tee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~--g~~l~g~~I~V~~sk 253 (337)
..+.|+++|..++.+.....++.- +-..|.|.+.++|.+|.. |+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999998887776554 468999999999999998 88 899999999998763
No 200
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.66 E-value=2.5 Score=39.69 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCceEEEEEeccCCC---CceEEEEEeCChHHHHHHHH
Q 019691 289 QGDIKLFFESVCGEVQRLRLLGDYQH---STRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 289 ee~L~~~F~~~~G~I~~v~i~~d~~~---~~g~aFVeF~~~e~A~~Ale 334 (337)
+++++.-+++| |.|..|.|+-+++. ..-.-||+|...++|++|+-
T Consensus 300 ede~keEceKy-g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~V 347 (378)
T KOG1996|consen 300 EDETKEECEKY-GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVV 347 (378)
T ss_pred HHHHHHHHHhh-cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHH
Confidence 35788899997 99999988876432 22257999999999999974
No 201
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.31 E-value=2.4 Score=35.44 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=70.2
Q ss_pred CCcHHHHHHHhhc-CCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCCCCCCCCCCCCCCC
Q 019691 189 QVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267 (337)
Q Consensus 189 ~vtee~L~~~F~~-~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~ 267 (337)
..+-..|...+.. .+....+.+..-. .++..+.|.+++++.+++......+.+..+.+..-... +.+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~---~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~-------~~~~~ 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG---DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD-------FNPSE 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC---CCeEEEEEEeccceeEEEecccccccccchhhhhhccc-------ccccc
Confidence 3556666665543 2222222222111 26899999999999999987777888888877764311 11111
Q ss_pred ccccccccceeeEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccC
Q 019691 268 EDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDY 312 (337)
Q Consensus 268 ~~~~~~~~~~l~V~NLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~ 312 (337)
.. .....-=|.|.|||.. .+++-++.+.+.+ |++..+......
T Consensus 98 ~~-~~~~~vWVri~glP~~~~~~~~~~~i~~~i-G~~i~vD~~t~~ 141 (153)
T PF14111_consen 98 VK-FEHIPVWVRIYGLPLHLWSEEILKAIGSKI-GEPIEVDENTLK 141 (153)
T ss_pred cc-eeccchhhhhccCCHHHhhhHHHHHHHHhc-CCeEEEEcCCCC
Confidence 00 0112345778899986 6778888888775 999998765543
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.10 E-value=3.5 Score=40.89 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=51.6
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.+.|+|-.+|..++-.||..|+..++-.|..++|++|.-..+-..+|.|.+.++|..=
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~F 131 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTF 131 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHH
Confidence 6899999999999999999999988789999999998655666899999999999753
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.46 E-value=1.5 Score=46.58 Aligned_cols=72 Identities=32% Similarity=0.311 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeE--ecccceEEccCCCC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM--LGFYPVRVLPSKTA 255 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~--l~g~~I~V~~sk~~ 255 (337)
+.++.|.+-..+..-|..+|..||.|.+.+.+++-+ .|.|+|.+.+.|..|+. ++|.. .-|-+.+|..++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 345556666777888999999999999999998876 89999999999999997 99876 45678888887654
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=78.19 E-value=2.8 Score=36.64 Aligned_cols=58 Identities=5% Similarity=-0.011 Sum_probs=35.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCce---EEEEEecc--C--CCCceEEEEEeCChHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEV---QRLRLLGD--Y--QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I---~~v~i~~d--~--~~~~g~aFVeF~~~e~A~~ 331 (337)
....|.|++||+.+|++++++.+..+.+.- .++..... . ...-..|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHH
Confidence 346899999999999999999777632544 33432222 1 1233479999999998654
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=76.50 E-value=2.2 Score=44.04 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=46.1
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+..++||+|+...+.++-++.+... ||.|.++.... |||.+|..+.-+..|+.+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHH
Confidence 4589999999999999999999976 89998876544 899999999988888754
No 206
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=76.25 E-value=12 Score=28.23 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=42.4
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.-|+-.++...+..+|++.++..|| +|..|..+.-... ..-|||.+...+.|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~-~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG-EKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-ceEEEEEECCCCcHHHH
Confidence 4666778899999999999998777 7888876655432 23699999888877654
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.10 E-value=9.8 Score=28.04 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 188 QQVTEEQLATLFLTCG-----QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 188 ~~vtee~L~~~F~~~G-----~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
..++..+|..++...+ .|-.|.+..+ |+||+-.. +.|..++. |++..+.|++++|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 4678888999887554 4556666543 89999875 47777776 999999999999875
No 208
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.85 E-value=9 Score=37.52 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEe
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTML 242 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V-~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l 242 (337)
......|-|.++|.....+||...|..|+.- -+|+|+.|. .||-.|.+...|..||.+...++
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceE
Confidence 3456689999999999999999999988743 567777775 69999999999999998643333
No 209
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.35 E-value=14 Score=28.19 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=43.4
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
.-|.--++...+..+|++.++..|| +|.+|..+.-... ..-|||.+...++|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~-~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG-EKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-cEEEEEEeCCCCcHHHHH
Confidence 4566667889999999999999878 7888877665432 236999999988887653
No 210
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.78 E-value=4.7 Score=32.76 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=35.0
Q ss_pred EEEEcCCCCC---------CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEc-CHHHHHHHHHhC
Q 019691 180 TVYVSDIDQQ---------VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT-DEEGARAALSLA 238 (337)
Q Consensus 180 tVfV~nLp~~---------vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~-~~e~A~~Al~l~ 238 (337)
++.|-|++.. .+.++|++.|..|..+ .++.+..+..+.|+++|+|. +...-..|+.|.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 5666677543 3557899999999886 46677777778899999999 566666777654
No 211
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=72.38 E-value=7.9 Score=32.78 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhc
Q 019691 291 DIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 291 ~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
+|.+.|..| |++.-+++..+ .-.|+|.+-++|.+||++.
T Consensus 52 ~ll~~~~~~-GevvLvRfv~~------~mwVTF~dg~sALaals~d 90 (146)
T PF08952_consen 52 ELLQKFAQY-GEVVLVRFVGD------TMWVTFRDGQSALAALSLD 90 (146)
T ss_dssp HHHHHHHCC-S-ECEEEEETT------CEEEEESSCHHHHHHHHGC
T ss_pred HHHHHHHhC-CceEEEEEeCC------eEEEEECccHHHHHHHccC
Confidence 566677776 99998888776 3589999999999999863
No 212
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=65.50 E-value=2.6 Score=38.76 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHHHHHHh-hcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 290 GDIKLFFE-SVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 290 e~L~~~F~-~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++|...|+ +| |+|+.+.+...- .+-.|=++|.|...++|++|++.
T Consensus 83 Ed~f~E~~~ky-gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~ 129 (260)
T KOG2202|consen 83 EDVFTELEDKY-GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALED 129 (260)
T ss_pred HHHHHHHHHHh-hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHH
Confidence 34444445 65 999999777653 34566799999999999999874
No 213
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.27 E-value=36 Score=32.01 Aligned_cols=48 Identities=6% Similarity=0.209 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEEcCHH
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNSVLRFAFVEFTDEE 229 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V-~~v~i~~d~~~~kg~aFV~F~~~e 229 (337)
..-|+++|||.++.-.||+.-+.+.|-+ .++.+ .++.|-||++|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 4459999999999999999999877643 44544 345678999998643
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.28 E-value=17 Score=34.35 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=41.1
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..-|.|-++|+.-. ..|...|++ ||.|.+.... .++ .|-+|.|.+.-+|.+||+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~-cG~Vvkhv~~-~ng---NwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSR-CGEVVKHVTP-SNG---NWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHh-hCeeeeeecC-CCC---ceEEEEecchhHHHHhhhh
Confidence 34566778887543 567788888 5999887654 222 2889999999999999974
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=61.60 E-value=6.9 Score=37.40 Aligned_cols=60 Identities=8% Similarity=0.179 Sum_probs=45.5
Q ss_pred cceeeEeCCCCCCCHHHHHH---HHhhcCCceEEEEEeccCC-----CCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKL---FFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~---~F~~~~G~I~~v~i~~d~~-----~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..-+||-+|+..+..+.+.+ .|.+| |.|..|.+.++.. ....-++|+|...++|..||..
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqy-gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQY-GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccccc-ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH
Confidence 46788899998776666554 67776 9999998888651 1233589999999999998864
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.13 E-value=42 Score=34.59 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcC----CCeeEEEEecCC-----------CCC---------------------
Q 019691 175 EVIRRTVYVSDIDQ-QVTEEQLATLFLTC----GQVVDCRICGDP-----------NSV--------------------- 217 (337)
Q Consensus 175 ~~~~rtVfV~nLp~-~vtee~L~~~F~~~----G~V~~v~i~~d~-----------~~~--------------------- 217 (337)
....+.|-|.|+.+ .+...+|.-+|..| |.|.+|.|+... .++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678899999996 57889999999855 589999986321 001
Q ss_pred -----------------ceEEEEEEcCHHHHHHHHH-hCCeEecccc
Q 019691 218 -----------------LRFAFVEFTDEEGARAALS-LAGTMLGFYP 246 (337)
Q Consensus 218 -----------------kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~ 246 (337)
--||.|+|.+.+.|.+..+ |+|+.|....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1389999999999999997 9999987643
No 217
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=55.42 E-value=5.9 Score=42.24 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=42.8
Q ss_pred eCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 281 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 281 ~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.|.+-..+-..|..+|.+| |.|.+.+.+++.. .|.|+|.+.++|..|+++
T Consensus 304 ~nn~v~~tSssL~~l~s~y-g~v~s~wtlr~~N----~alvs~~s~~sai~a~dA 353 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDY-GSVASAWTLRDLN----MALVSFSSVESAILALDA 353 (1007)
T ss_pred hcccccchHHHHHHHHHhh-cchhhheeccccc----chhhhhHHHHHHHHhhhh
Confidence 3444466778899999998 9999999999877 799999999999999986
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.13 E-value=28 Score=34.19 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=46.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
-...|-|.++|...-.+||...|+.|.+.=-.|+++.|.+ ||-.|.+...|..||-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdth-----alaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTH-----ALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecce-----eEEeecchHHHHHHhhc
Confidence 4578889999999999999999999855556677766655 89999999988888754
No 219
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=50.53 E-value=67 Score=26.18 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHhhc--CCceEEEEEecc--CCCCceEEEEEeCChHHHHHHH
Q 019691 283 IDKKVTQGDIKLFFESV--CGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 283 Lp~~~tee~L~~~F~~~--~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Al 333 (337)
-|..+|-.+++++|..- +-.|++-.+.+| +..+-+.||.-|.....-....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~e~~~~ 136 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQFEEISR 136 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchhHHHhh
Confidence 36689999999999742 022333334444 2335568999887665443333
No 220
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.50 E-value=88 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=40.4
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~ 331 (337)
.-|+--++...+..+|++.++..|+ .|..|..+...+. .--|||.+....+|..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g-~KKA~V~L~~~~~aid 137 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG-LKKAYIRLSPDVDALD 137 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC-ceEEEEEECCCCcHHH
Confidence 5666667889999999999998767 6788876655432 2269999988777654
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.31 E-value=27 Score=28.37 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=26.9
Q ss_pred ceeeEeCCCC---------CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChH
Q 019691 276 RTIYCTNIDK---------KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVS 327 (337)
Q Consensus 276 ~~l~V~NLp~---------~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e 327 (337)
.++.|.|++. ..+.++|++.|..| ..+ .++.+.+....+|+++|+|...-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f-~p~-kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF-NPL-KVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH----S-EEEEEEETTEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhc-CCc-eeEECcCCCCCcEEEEEEECCCh
Confidence 3455566643 24568899999997 544 45555665567889999998643
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.85 E-value=19 Score=27.76 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHh
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLF 199 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F 199 (337)
...+|+|.|+|||...++++|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4577899999999999999999864
No 223
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=35.29 E-value=76 Score=24.56 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=36.4
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCC------------CceEEEEEeCChH
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQH------------STRIAFVEFAMVS 327 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~------------~~g~aFVeF~~~e 327 (337)
...|+--++..++..+|++.++.+|| .|..|..+.-.++ ..--|||.+...+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~~g~ 84 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAEGQ 84 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcCCCC
Confidence 34566667889999999999999878 6777766544322 2236788776543
No 224
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=33.87 E-value=2.5 Score=41.56 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEe-cCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC-GDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~-~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
.+|.+-|.|+|+...++-|..+...||.+..|..+ .+..+ -..=|.|...+.++.||. ++|..|....++|.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 45669999999999999999999999999988653 23221 122377888999999997 999999998888876
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.83 E-value=1.1e+02 Score=31.79 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=50.7
Q ss_pred ccccceeeEeCCCC-CCCHHHHHHHHhhcC---CceEEEEEeccC-CC----------C---------------------
Q 019691 272 EMCSRTIYCTNIDK-KVTQGDIKLFFESVC---GEVQRLRLLGDY-QH----------S--------------------- 315 (337)
Q Consensus 272 ~~~~~~l~V~NLp~-~~tee~L~~~F~~~~---G~I~~v~i~~d~-~~----------~--------------------- 315 (337)
...+++|-|.|+.. .+..++|.-+|..|+ |.|.+|.|.+.. |+ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34678999999997 588899999999873 689999887531 11 1
Q ss_pred -----------------ceEEEEEeCChHHHHHHHHhc
Q 019691 316 -----------------TRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 316 -----------------~g~aFVeF~~~e~A~~Ale~s 336 (337)
--||.|+|.+.+.|.+..+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~C 288 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEEC 288 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhc
Confidence 128999999999999887766
No 226
>CHL00030 rpl23 ribosomal protein L23
Probab=31.51 E-value=85 Score=24.46 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=37.1
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCC------------ceEEEEEeCChH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHS------------TRIAFVEFAMVS 327 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~------------~g~aFVeF~~~e 327 (337)
..|+--++...+..+|++.++.+|| .|..|..+.-.++. .--|+|.+...+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~g~ 83 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQPGY 83 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCCcC
Confidence 5666667899999999999999777 78888766543321 225888887644
No 227
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=29.77 E-value=2e+02 Score=20.25 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCceEEE----EEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 291 DIKLFFESVCGEVQRL----RLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 291 ~L~~~F~~~~G~I~~v----~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
.+..+++++.|++... .++-..........|+|.+.+.|.+..+
T Consensus 10 ~~~~~l~~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 10 AVPPILEKYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHHTT-EEEEECEEEEEEEST-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEECCceeEEecCCCCCeEEEEECCCHHHHHHHHC
Confidence 3456777876665542 2333333456689999999999988664
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.26 E-value=89 Score=29.49 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=35.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMV 326 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~ 326 (337)
...-||++||+.++--.||+..+.+. + .-.++.+.. ..|-||+.|-+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~-~~~pm~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKR-ECTPMSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhc-CCCceeEeeec----CCcceeEecCCc
Confidence 34679999999999999999999886 4 333443322 344799999764
No 229
>PF14893 PNMA: PNMA
Probab=28.05 E-value=70 Score=30.92 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=35.1
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---CCCCceEEEEEeCC
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAM 325 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~~~~~g~aFVeF~~ 325 (337)
..+.|.|.+||.++++++|.+.++.-.-.+-.++++.. ......-|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 45889999999999999999988753223334444432 12233478999874
No 230
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=27.67 E-value=2.4e+02 Score=21.92 Aligned_cols=52 Identities=2% Similarity=-0.011 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHH-------HhhcCCceEEEEEecc-------CCCCce-EEEEEeCChHHHHHHHHh
Q 019691 284 DKKVTQGDIKLF-------FESVCGEVQRLRLLGD-------YQHSTR-IAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 284 p~~~tee~L~~~-------F~~~~G~I~~v~i~~d-------~~~~~g-~aFVeF~~~e~A~~Ale~ 335 (337)
.++++++++..+ +.+..|+|..+.-... .+...| |.++.|....++.+.|+.
T Consensus 15 ~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 15 KPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 566777665554 4454567877765432 233455 789999988898888874
No 231
>PF14893 PNMA: PNMA
Probab=26.83 E-value=51 Score=31.85 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEecC---CCCCceEEEEEEcC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGD---PNSVLRFAFVEFTD 227 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~-~G~V~~v~i~~d---~~~~kg~aFV~F~~ 227 (337)
..|.|.|.+||.++++++|++.+.. +-..-.+++... +.....-|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 4678999999999999999988753 222222333211 12234567888864
No 232
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.04 E-value=27 Score=30.62 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=49.9
Q ss_pred ccccCCCCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCCC---CceEEEEEEcCHHHHHHHHHhCCeEeccc
Q 019691 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNS---VLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (337)
Q Consensus 170 ~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~-~~G~V~~v~i~~d~~~---~kg~aFV~F~~~e~A~~Al~l~g~~l~g~ 245 (337)
+........|++|.. .|+++|.++.. .-|.+..+.+-+.... -+|--||.|.+.+.|.+.+.-......-.
T Consensus 103 ~e~~~~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~ 177 (205)
T KOG4213|consen 103 DEYKEGIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAET 177 (205)
T ss_pred HHHHHHHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccch
Confidence 444556677888887 55555555543 2278888877655443 37889999999999999886555444444
Q ss_pred ceEE
Q 019691 246 PVRV 249 (337)
Q Consensus 246 ~I~V 249 (337)
+|..
T Consensus 178 el~r 181 (205)
T KOG4213|consen 178 ELKR 181 (205)
T ss_pred HHHH
Confidence 4443
No 233
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=25.84 E-value=1.8e+02 Score=21.08 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhc
Q 019691 286 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 286 ~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
.++-++++..+..| .-.. |..|. +| =||.|.+.++|.++.+++
T Consensus 11 ~~~v~d~K~~Lr~y--~~~~--I~~d~---tG-fYIvF~~~~Ea~rC~~~~ 53 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY--RWDR--IRDDR---TG-FYIVFNDSKEAERCFRAE 53 (66)
T ss_pred CccHHHHHHHHhcC--Ccce--EEecC---CE-EEEEECChHHHHHHHHhc
Confidence 57888999999988 3333 33332 22 489999999999988753
No 234
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=25.62 E-value=1.1e+02 Score=28.88 Aligned_cols=56 Identities=11% Similarity=0.232 Sum_probs=45.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---------CCCceEEEEEeCChHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---------QHSTRIAFVEFAMVSEPF 330 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---------~~~~g~aFVeF~~~e~A~ 330 (337)
..|.|.+.|+..+++-..+..-|-+| |.|++|.++.+. .+......+.|-+.+.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~-~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKF-GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhcc-CceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 56889999999999999999999897 999999998764 123456788888877664
No 235
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=23.93 E-value=1.3e+02 Score=25.87 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.9
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEecc
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGD 311 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d 311 (337)
..|+--++...+..+|+..++.+|| .|..|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 5677788999999999999999888 6778776643
No 236
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=22.73 E-value=3.5e+02 Score=20.62 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 289 QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 289 ee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
.+.+++++++.+|++.++.+.... .-....+++.+.+.|.++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~--yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE--YDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC--CCEEEEEEcCCHHHHHHHH
Confidence 356888899987899988777542 3347788888888777653
No 237
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.21 E-value=1.3e+02 Score=28.27 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=15.3
Q ss_pred EEEEEcCHHHHHHHHH
Q 019691 221 AFVEFTDEEGARAALS 236 (337)
Q Consensus 221 aFV~F~~~e~A~~Al~ 236 (337)
|||.|++..+|..|++
T Consensus 1 aFVtF~~~~~a~~~~q 16 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQ 16 (325)
T ss_pred CEEEECCHHHHHHHHH
Confidence 7999999999999998
No 238
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=21.95 E-value=2e+02 Score=22.44 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=30.0
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCC
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQH 314 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~ 314 (337)
...|+--+.+..+..+|+..++..|| +|..|..+..++.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 35566667789999999999999888 7888877655443
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.33 E-value=79 Score=29.01 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 208 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v 208 (337)
....+++|+-|+|...|++-|.++.+.+|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456799999999999999999999999866554
Done!