Query 019691
Match_columns 337
No_of_seqs 420 out of 1785
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.4E-29 1.8E-33 222.4 18.2 147 176-335 13-162 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 1.9E-28 6.4E-33 214.2 18.4 153 174-335 9-165 (196)
3 3md3_A Nuclear and cytoplasmic 100.0 4.6E-28 1.6E-32 205.5 18.3 144 179-335 1-148 (166)
4 1fxl_A Paraneoplastic encephal 100.0 2.4E-27 8.2E-32 201.3 19.7 143 178-335 2-149 (167)
5 3nmr_A Cugbp ELAV-like family 100.0 1.7E-27 5.7E-32 204.0 18.1 145 177-335 2-155 (175)
6 3tyt_A Heterogeneous nuclear r 100.0 1.9E-27 6.4E-32 212.0 19.0 155 177-335 3-184 (205)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-27 6.5E-32 202.6 17.8 144 177-335 2-150 (168)
8 2qfj_A FBP-interacting repress 99.9 3.1E-27 1.1E-31 209.6 14.8 157 175-335 25-186 (216)
9 2cjk_A Nuclear polyadenylated 99.9 3.1E-27 1.1E-31 201.3 13.6 143 177-335 2-148 (167)
10 2g4b_A Splicing factor U2AF 65 99.9 5.9E-26 2E-30 194.3 17.6 140 177-335 3-155 (172)
11 3sde_A Paraspeckle component 1 99.9 1.9E-25 6.5E-30 205.5 18.6 136 175-335 19-156 (261)
12 2yh0_A Splicing factor U2AF 65 99.9 2.9E-25 9.9E-30 194.2 18.8 154 177-335 3-175 (198)
13 2ghp_A U4/U6 snRNA-associated 99.9 9.6E-26 3.3E-30 209.8 16.0 142 171-334 34-177 (292)
14 1fje_B Nucleolin RBD12, protei 99.9 3.5E-26 1.2E-30 196.7 11.5 146 174-335 9-155 (175)
15 2adc_A Polypyrimidine tract-bi 99.9 5.7E-25 1.9E-29 198.4 19.8 156 173-335 29-208 (229)
16 2ghp_A U4/U6 snRNA-associated 99.9 8.4E-26 2.9E-30 210.2 14.1 227 60-333 38-271 (292)
17 3pgw_A U1-A; protein-RNA compl 99.9 1.1E-24 3.7E-29 201.8 20.2 157 174-335 5-263 (282)
18 1qm9_A Polypyrimidine tract-bi 99.9 4.6E-25 1.6E-29 193.7 15.6 152 177-335 2-177 (198)
19 3smz_A Protein raver-1, ribonu 99.9 7.4E-25 2.5E-29 203.0 17.9 147 177-335 94-245 (284)
20 3smz_A Protein raver-1, ribonu 99.9 3.9E-24 1.3E-28 198.1 18.3 135 175-335 19-156 (284)
21 4f25_A Polyadenylate-binding p 99.9 2.1E-21 7.1E-26 157.0 10.0 109 177-291 4-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.8 4.5E-18 1.6E-22 133.8 10.5 77 177-253 18-97 (99)
23 2kn4_A Immunoglobulin G-bindin 99.7 3.9E-17 1.3E-21 138.4 11.4 120 207-335 2-131 (158)
24 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-16 4.1E-21 125.8 13.2 80 175-254 12-92 (103)
25 3s8s_A Histone-lysine N-methyl 99.7 4.4E-17 1.5E-21 130.7 10.6 78 176-253 4-84 (110)
26 2cq3_A RNA-binding protein 9; 99.7 1.6E-16 5.5E-21 125.1 13.6 81 175-255 12-93 (103)
27 2hvz_A Splicing factor, argini 99.7 3.5E-17 1.2E-21 128.5 9.1 99 179-284 1-100 (101)
28 2cpz_A CUG triplet repeat RNA- 99.7 2E-16 6.8E-21 127.2 12.9 82 174-255 21-105 (115)
29 2dgo_A Cytotoxic granule-assoc 99.7 3.2E-16 1.1E-20 125.9 13.6 84 173-256 10-96 (115)
30 2lxi_A RNA-binding protein 10; 99.7 2.7E-17 9.3E-22 127.3 6.9 76 178-253 1-81 (91)
31 3lqv_A PRE-mRNA branch site pr 99.7 3.2E-17 1.1E-21 131.7 7.5 103 175-301 5-108 (115)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9E-17 3.1E-21 121.8 9.4 79 175-253 4-85 (85)
33 2cqc_A Arginine/serine-rich sp 99.7 1.8E-16 6.2E-21 122.7 11.1 79 175-253 12-93 (95)
34 1s79_A Lupus LA protein; RRM, 99.7 7.9E-17 2.7E-21 127.7 9.2 81 173-253 6-87 (103)
35 2dgs_A DAZ-associated protein 99.7 2.6E-16 9E-21 123.0 12.0 80 175-254 7-88 (99)
36 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-16 5.5E-21 122.8 10.4 79 175-253 13-94 (94)
37 3s7r_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 121.0 10.1 80 173-252 6-87 (87)
38 2cq0_A Eukaryotic translation 99.7 2.1E-16 7.3E-21 124.4 11.0 80 175-254 12-94 (103)
39 2dnh_A Bruno-like 5, RNA bindi 99.7 3.9E-16 1.3E-20 123.2 12.3 81 175-255 12-97 (105)
40 2ywk_A Putative RNA-binding pr 99.7 1.6E-16 5.4E-21 123.1 9.8 79 175-253 13-93 (95)
41 3p5t_L Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 125.6 6.2 77 179-255 2-83 (90)
42 2dnz_A Probable RNA-binding pr 99.7 4E-16 1.4E-20 120.8 11.8 79 176-254 3-84 (95)
43 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.9E-16 6.6E-21 120.5 9.7 78 176-253 4-84 (87)
44 1whw_A Hypothetical protein ri 99.7 3.3E-16 1.1E-20 122.3 11.2 81 175-255 5-88 (99)
45 2dnm_A SRP46 splicing factor; 99.7 1.8E-16 6.1E-21 124.8 9.7 82 174-255 9-93 (103)
46 1x4a_A Splicing factor, argini 99.7 7.9E-16 2.7E-20 122.5 13.4 79 175-254 19-98 (109)
47 2do4_A Squamous cell carcinoma 99.7 5.2E-16 1.8E-20 121.5 12.0 79 175-253 14-94 (100)
48 2dgx_A KIAA0430 protein; RRM d 99.7 3.5E-16 1.2E-20 121.9 10.9 77 177-254 8-89 (96)
49 1x5u_A Splicing factor 3B subu 99.7 3.6E-16 1.2E-20 123.4 11.1 80 175-254 12-94 (105)
50 2cpf_A RNA binding motif prote 99.7 2.6E-16 8.8E-21 122.7 10.1 80 176-255 3-88 (98)
51 2dgv_A HnRNP M, heterogeneous 99.7 3.8E-16 1.3E-20 120.2 10.9 80 176-255 6-86 (92)
52 3md1_A Nuclear and cytoplasmic 99.7 3.1E-16 1.1E-20 118.3 10.1 75 179-253 2-79 (83)
53 2d9p_A Polyadenylate-binding p 99.7 4.3E-16 1.5E-20 122.6 11.3 81 175-255 12-93 (103)
54 2lkz_A RNA-binding protein 5; 99.7 9.8E-17 3.4E-21 125.4 7.4 78 177-254 8-94 (95)
55 3ucg_A Polyadenylate-binding p 99.7 3.4E-16 1.2E-20 119.6 10.1 78 177-254 5-84 (89)
56 2err_A Ataxin-2-binding protei 99.7 2.3E-16 7.8E-21 126.0 9.2 79 175-253 26-105 (109)
57 2cjk_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 138.6 4.7 146 87-253 16-164 (167)
58 1x4h_A RNA-binding protein 28; 99.7 7.4E-16 2.5E-20 122.7 12.0 80 175-254 12-100 (111)
59 2cph_A RNA binding motif prote 99.7 6.6E-16 2.2E-20 122.2 11.5 81 174-254 11-96 (107)
60 1sjq_A Polypyrimidine tract-bi 99.7 4.3E-16 1.5E-20 123.8 10.4 76 175-254 13-91 (105)
61 2fy1_A RNA-binding motif prote 99.7 6.3E-16 2.2E-20 124.9 11.5 81 175-255 4-86 (116)
62 1x5s_A Cold-inducible RNA-bind 99.7 3.4E-16 1.2E-20 122.9 9.6 80 175-254 9-91 (102)
63 2x1f_A MRNA 3'-END-processing 99.7 4.4E-16 1.5E-20 121.1 10.1 77 178-254 2-81 (96)
64 4f02_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 146.0 3.8 161 63-253 15-179 (213)
65 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.9E-16 1.3E-20 122.6 9.6 79 176-254 10-91 (102)
66 1p27_B RNA-binding protein 8A; 99.7 4.8E-16 1.6E-20 122.9 10.2 78 176-253 21-101 (106)
67 2cqd_A RNA-binding region cont 99.7 9.9E-16 3.4E-20 123.2 12.2 81 174-255 13-96 (116)
68 1x5t_A Splicing factor 3B subu 99.7 4.3E-16 1.5E-20 120.8 9.7 79 176-254 3-85 (96)
69 2la6_A RNA-binding protein FUS 99.7 5.3E-16 1.8E-20 121.3 10.3 80 173-252 8-98 (99)
70 2qfj_A FBP-interacting repress 99.7 2.3E-16 8E-21 139.2 9.2 157 87-255 41-205 (216)
71 2khc_A Testis-specific RNP-typ 99.7 9.5E-16 3.3E-20 123.6 12.0 80 174-253 36-118 (118)
72 2jrs_A RNA-binding protein 39; 99.6 5.9E-16 2E-20 123.5 10.5 81 173-253 21-104 (108)
73 2div_A TRNA selenocysteine ass 99.6 5.6E-16 1.9E-20 121.0 10.1 79 176-254 7-93 (99)
74 2dgp_A Bruno-like 4, RNA bindi 99.6 6.8E-16 2.3E-20 122.0 10.7 81 174-254 9-95 (106)
75 2kxn_B Transformer-2 protein h 99.6 5.6E-16 1.9E-20 127.7 10.4 80 175-254 43-125 (129)
76 3ulh_A THO complex subunit 4; 99.6 6.2E-16 2.1E-20 122.5 10.2 79 175-253 26-106 (107)
77 1b7f_A Protein (SXL-lethal pro 99.6 1.1E-16 3.6E-21 135.8 6.1 148 87-252 16-168 (168)
78 2dh8_A DAZ-associated protein 99.6 7.7E-16 2.6E-20 121.6 10.6 80 175-254 13-94 (105)
79 2dng_A Eukaryotic translation 99.6 1.1E-15 3.6E-20 120.5 11.3 79 175-254 12-92 (103)
80 2cq4_A RNA binding motif prote 99.6 4E-16 1.4E-20 125.2 8.9 79 175-253 22-102 (114)
81 2i2y_A Fusion protein consists 99.6 7.5E-16 2.6E-20 129.6 10.8 122 209-335 4-129 (150)
82 2do0_A HnRNP M, heterogeneous 99.6 2.2E-15 7.5E-20 120.6 12.9 80 176-255 13-94 (114)
83 3ns6_A Eukaryotic translation 99.6 2E-16 6.8E-21 124.4 6.6 78 176-253 4-91 (100)
84 2dhg_A TRNA selenocysteine ass 99.6 9.8E-16 3.3E-20 120.7 10.2 80 175-254 6-89 (104)
85 2cqg_A TDP-43, TAR DNA-binding 99.6 2.8E-15 9.4E-20 118.0 12.8 80 174-254 11-92 (103)
86 2cpe_A RNA-binding protein EWS 99.6 1.2E-15 4.1E-20 122.1 10.8 81 174-254 11-102 (113)
87 4a8x_A RNA-binding protein wit 99.6 7.3E-16 2.5E-20 117.4 9.1 77 177-253 3-83 (88)
88 2kt5_A RNA and export factor-b 99.6 5.1E-15 1.8E-19 120.5 14.6 82 175-256 32-115 (124)
89 2mss_A Protein (musashi1); RNA 99.6 2.7E-16 9.3E-21 116.5 6.3 73 180-252 1-75 (75)
90 2cpi_A CCR4-NOT transcription 99.6 7.8E-16 2.7E-20 123.2 9.5 79 176-254 13-100 (111)
91 1oo0_B CG8781-PA, drosophila Y 99.6 9.8E-16 3.3E-20 122.0 9.9 79 175-253 23-104 (110)
92 1u6f_A Tcubp1, RNA-binding pro 99.6 7.2E-15 2.5E-19 121.8 15.5 83 173-255 37-122 (139)
93 1x4e_A RNA binding motif, sing 99.6 3.1E-16 1.1E-20 119.0 6.5 78 176-253 3-83 (85)
94 2cq1_A PTB-like protein L; RRM 99.6 2.8E-15 9.6E-20 118.4 12.0 76 176-255 13-91 (101)
95 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-15 3.7E-20 117.0 9.0 71 178-252 7-78 (89)
96 3r27_A HnRNP L, heterogeneous 99.6 1.2E-15 4.2E-20 120.1 9.6 76 175-254 18-96 (100)
97 1wi8_A EIF-4B, eukaryotic tran 99.6 1.9E-15 6.4E-20 119.3 10.6 78 176-254 13-93 (104)
98 1x4d_A Matrin 3; structural ge 99.6 9.1E-16 3.1E-20 121.4 8.5 74 177-254 14-91 (102)
99 2ytc_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.4E-20 115.0 9.5 75 175-253 9-85 (85)
100 2dgw_A Probable RNA-binding pr 99.6 2.1E-15 7.1E-20 116.0 10.1 78 175-253 7-85 (91)
101 2cpy_A RNA-binding protein 12; 99.6 8.4E-16 2.9E-20 123.6 8.2 79 175-253 12-92 (114)
102 2db1_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 124.2 8.6 79 175-253 14-96 (118)
103 2krb_A Eukaryotic translation 99.6 7E-16 2.4E-20 116.2 7.1 73 178-250 1-81 (81)
104 2dnq_A RNA-binding protein 4B; 99.6 3.4E-15 1.2E-19 114.6 11.0 74 175-254 5-79 (90)
105 3n9u_C Cleavage and polyadenyl 99.6 1.6E-15 5.3E-20 129.2 9.8 77 177-253 54-135 (156)
106 2rs2_A Musashi-1, RNA-binding 99.6 2.3E-15 7.9E-20 120.2 10.2 81 173-253 20-102 (109)
107 1x4g_A Nucleolysin TIAR; struc 99.6 3.4E-15 1.2E-19 118.8 11.1 78 174-255 21-99 (109)
108 2jwn_A Embryonic polyadenylate 99.6 2E-15 6.7E-20 122.8 9.9 81 175-255 33-115 (124)
109 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.9E-20 120.5 8.8 79 175-253 12-98 (105)
110 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.6E-20 119.2 7.9 78 176-253 13-93 (98)
111 1x5o_A RNA binding motif, sing 99.6 5.4E-15 1.9E-19 118.4 12.2 80 174-253 21-110 (114)
112 1p1t_A Cleavage stimulation fa 99.6 1.1E-15 3.9E-20 120.2 8.0 78 176-253 6-86 (104)
113 1fxl_A Paraneoplastic encephal 99.6 3.7E-16 1.3E-20 131.9 5.4 148 87-252 15-167 (167)
114 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.4E-15 1.2E-19 126.4 11.4 81 174-254 35-118 (156)
115 2ad9_A Polypyrimidine tract-bi 99.6 2.7E-15 9.4E-20 121.9 10.3 74 177-254 30-106 (119)
116 1wez_A HnRNP H', FTP-3, hetero 99.6 8E-16 2.8E-20 121.6 6.9 78 176-254 13-91 (102)
117 1wel_A RNA-binding protein 12; 99.6 7.4E-16 2.5E-20 125.7 6.6 79 175-253 22-102 (124)
118 2ek1_A RNA-binding protein 12; 99.6 9E-16 3.1E-20 118.8 6.7 77 177-253 14-93 (95)
119 1wg5_A Heterogeneous nuclear r 99.6 2.3E-15 8E-20 119.0 9.2 78 176-253 13-92 (104)
120 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.7E-15 1.3E-19 123.3 10.9 77 176-252 61-140 (140)
121 2lea_A Serine/arginine-rich sp 99.6 1.1E-15 3.8E-20 126.8 7.7 82 174-255 43-127 (135)
122 1x4b_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 119.9 10.5 79 176-254 25-105 (116)
123 1why_A Hypothetical protein ri 99.6 4.6E-15 1.6E-19 115.5 10.7 75 176-254 15-92 (97)
124 3md3_A Nuclear and cytoplasmic 99.6 6.1E-16 2.1E-20 130.4 6.1 79 175-253 84-165 (166)
125 3ex7_B RNA-binding protein 8A; 99.6 2.6E-15 8.8E-20 122.5 9.4 80 175-254 19-101 (126)
126 2e5j_A Methenyltetrahydrofolat 99.6 3.9E-15 1.3E-19 116.0 10.0 76 175-253 16-92 (97)
127 1l3k_A Heterogeneous nuclear r 99.6 7.8E-16 2.7E-20 133.8 6.6 164 62-253 12-181 (196)
128 2cpj_A Non-POU domain-containi 99.6 3.4E-15 1.1E-19 116.7 9.5 76 175-254 12-88 (99)
129 1x4c_A Splicing factor, argini 99.6 1.4E-14 4.8E-19 115.2 13.2 73 177-254 14-92 (108)
130 2la4_A Nuclear and cytoplasmic 99.6 3.1E-15 1E-19 117.3 9.2 75 175-253 24-99 (101)
131 2kn4_A Immunoglobulin G-bindin 99.6 5.2E-15 1.8E-19 125.3 11.2 81 175-255 67-150 (158)
132 3nmr_A Cugbp ELAV-like family 99.6 5.6E-15 1.9E-19 125.7 11.5 150 87-252 16-174 (175)
133 2hgl_A HNRPF protein, heteroge 99.6 1.6E-15 5.3E-20 126.3 7.8 78 175-252 41-122 (136)
134 2dgt_A RNA-binding protein 30; 99.6 9.5E-15 3.2E-19 112.6 11.6 74 175-254 7-81 (92)
135 1wex_A Hypothetical protein (r 99.6 6E-15 2E-19 117.1 10.7 76 176-255 13-91 (104)
136 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1E-15 3.6E-20 120.1 6.2 79 174-253 15-96 (100)
137 2dnp_A RNA-binding protein 14; 99.6 5.8E-15 2E-19 113.3 10.3 75 175-255 6-81 (90)
138 2jvr_A Nucleolar protein 3; RN 99.6 2.3E-15 7.9E-20 120.9 8.3 76 176-253 26-103 (111)
139 2dnn_A RNA-binding protein 12; 99.6 2.6E-15 8.9E-20 120.2 8.4 75 177-252 15-90 (109)
140 2ki2_A SS-DNA binding protein 99.6 5.7E-16 1.9E-20 118.8 4.2 76 179-255 2-80 (90)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1E-15 3.6E-20 113.7 5.6 73 179-252 1-76 (77)
142 2dis_A Unnamed protein product 99.6 6.7E-15 2.3E-19 116.8 10.6 80 176-255 6-92 (109)
143 2fc9_A NCL protein; structure 99.6 7.5E-15 2.6E-19 115.0 10.6 78 175-255 12-91 (101)
144 2jvo_A Nucleolar protein 3; nu 99.6 5.6E-15 1.9E-19 117.8 10.0 75 174-254 27-102 (108)
145 1iqt_A AUF1, heterogeneous nuc 99.6 7.5E-16 2.6E-20 114.0 4.5 73 180-252 1-75 (75)
146 2xnq_A Nuclear polyadenylated 99.6 9.5E-15 3.3E-19 114.1 10.6 75 174-254 18-94 (97)
147 2m2b_A RNA-binding protein 10; 99.6 2.1E-15 7.2E-20 124.2 7.1 79 175-254 20-107 (131)
148 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-15 4.7E-20 121.0 5.5 79 175-253 8-90 (107)
149 2e5g_A U6 snRNA-specific termi 99.6 1.4E-14 4.9E-19 112.1 11.2 74 177-253 7-80 (94)
150 1whx_A Hypothetical protein ri 99.6 4.1E-15 1.4E-19 119.2 8.2 75 177-255 9-84 (111)
151 2cpd_A Apobec-1 stimulating pr 99.6 3E-14 1E-18 111.3 12.8 74 175-254 12-88 (99)
152 2dgu_A Heterogeneous nuclear r 99.6 1.4E-14 4.8E-19 114.1 10.7 74 176-255 9-83 (103)
153 2i2y_A Fusion protein consists 99.6 1.2E-14 4E-19 122.3 10.6 76 175-253 70-146 (150)
154 2f3j_A RNA and export factor b 99.6 1.9E-14 6.6E-19 124.9 12.1 81 175-255 85-167 (177)
155 1wf1_A RNA-binding protein RAL 99.6 1.4E-14 4.9E-19 115.4 10.1 73 176-254 25-99 (110)
156 2a3j_A U1 small nuclear ribonu 99.6 1E-14 3.5E-19 119.9 9.4 78 176-254 27-109 (127)
157 2kvi_A Nuclear polyadenylated 99.6 7.6E-15 2.6E-19 114.2 8.1 74 175-254 7-82 (96)
158 1x4f_A Matrin 3; structural ge 99.6 1.2E-14 4.2E-19 116.8 9.4 76 175-254 22-101 (112)
159 2cpx_A Hypothetical protein FL 99.6 2.5E-14 8.5E-19 114.6 11.1 79 175-255 22-105 (115)
160 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.6E-14 5.4E-19 123.6 10.2 79 176-254 70-151 (165)
161 1nu4_A U1A RNA binding domain; 99.5 5.3E-15 1.8E-19 114.8 6.2 79 175-254 5-88 (97)
162 2hgm_A HNRPF protein, heteroge 99.5 7.6E-15 2.6E-19 120.5 6.9 76 176-252 40-118 (126)
163 2e44_A Insulin-like growth fac 99.5 2.2E-14 7.5E-19 111.2 9.0 76 176-253 13-90 (96)
164 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4E-19 112.8 7.4 76 175-253 13-89 (96)
165 2fc8_A NCL protein; structure 99.5 3.3E-14 1.1E-18 111.5 10.0 77 175-254 12-91 (102)
166 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-15 1.2E-19 116.9 4.3 77 176-253 15-93 (101)
167 2hgn_A Heterogeneous nuclear r 99.5 2.4E-15 8.3E-20 125.6 3.5 79 175-254 43-122 (139)
168 3q2s_C Cleavage and polyadenyl 99.5 1.1E-14 3.8E-19 131.4 8.1 77 177-253 67-148 (229)
169 2dha_A FLJ20171 protein; RRM d 99.5 8.5E-15 2.9E-19 119.7 6.6 77 176-252 21-102 (123)
170 1wg1_A KIAA1579 protein, homol 99.5 1.8E-14 6E-19 110.3 7.7 73 177-254 4-77 (88)
171 2xs2_A Deleted in azoospermia- 99.5 6.3E-15 2.1E-19 115.7 5.1 77 176-253 7-84 (102)
172 2hzc_A Splicing factor U2AF 65 99.5 2.4E-14 8.1E-19 108.8 8.0 71 177-251 5-86 (87)
173 2lcw_A RNA-binding protein FUS 99.3 1.3E-15 4.4E-20 122.6 0.0 80 175-254 4-94 (116)
174 1x5p_A Negative elongation fac 99.5 2.1E-13 7.1E-18 106.1 12.6 74 175-254 12-86 (97)
175 2cqh_A IGF-II mRNA-binding pro 99.5 3.8E-14 1.3E-18 109.3 8.3 74 176-254 6-82 (93)
176 2g4b_A Splicing factor U2AF 65 99.5 4.8E-14 1.6E-18 119.9 9.1 78 175-252 91-171 (172)
177 3d2w_A TAR DNA-binding protein 99.5 4.9E-14 1.7E-18 108.4 7.9 73 175-253 8-82 (89)
178 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 113.2 11.2 75 178-255 28-106 (130)
179 1sjr_A Polypyrimidine tract-bi 99.5 1.2E-13 4.2E-18 117.9 10.9 77 177-255 45-124 (164)
180 3beg_B Splicing factor, argini 99.5 7E-14 2.4E-18 112.6 8.8 72 177-253 15-92 (115)
181 3egn_A RNA-binding protein 40; 99.5 4.5E-14 1.5E-18 117.7 7.6 79 175-254 42-129 (143)
182 2cq2_A Hypothetical protein LO 99.5 6.7E-14 2.3E-18 112.7 7.9 75 175-253 22-104 (114)
183 1qm9_A Polypyrimidine tract-bi 99.5 1.1E-12 3.7E-17 114.4 16.2 76 176-254 118-196 (198)
184 2e5i_A Heterogeneous nuclear r 99.5 6.4E-13 2.2E-17 108.7 13.1 72 180-255 27-102 (124)
185 1wf0_A TDP-43, TAR DNA-binding 99.5 6.2E-14 2.1E-18 107.0 6.6 74 177-254 4-77 (88)
186 2voo_A Lupus LA protein; RNA-b 99.5 1.8E-13 6.2E-18 120.3 10.1 79 176-254 107-186 (193)
187 2adc_A Polypyrimidine tract-bi 99.5 2E-12 6.7E-17 116.0 16.7 76 176-254 149-227 (229)
188 2bz2_A Negative elongation fac 99.4 2.2E-13 7.4E-18 110.9 8.6 75 174-254 35-110 (121)
189 2yh0_A Splicing factor U2AF 65 99.4 3.7E-13 1.2E-17 117.0 10.3 80 175-254 111-193 (198)
190 2diu_A KIAA0430 protein; struc 99.4 2.8E-13 9.6E-18 104.7 8.3 70 178-255 8-84 (96)
191 3pgw_S U1-70K; protein-RNA com 99.4 3.2E-13 1.1E-17 132.9 10.4 79 176-254 100-181 (437)
192 2dnl_A Cytoplasmic polyadenyla 99.4 4E-13 1.4E-17 107.8 9.0 73 176-251 6-84 (114)
193 4f25_A Polyadenylate-binding p 99.4 2.8E-13 9.7E-18 108.9 8.0 61 274-335 4-64 (115)
194 3tyt_A Heterogeneous nuclear r 99.4 1.9E-13 6.6E-18 121.1 7.6 76 176-251 121-203 (205)
195 4fxv_A ELAV-like protein 1; RN 99.4 4.3E-13 1.5E-17 105.2 8.6 61 274-335 18-80 (99)
196 2lxi_A RNA-binding protein 10; 99.4 1.6E-13 5.4E-18 105.9 5.2 60 275-335 1-63 (91)
197 2pe8_A Splicing factor 45; RRM 99.4 1.3E-12 4.4E-17 103.8 10.6 78 176-253 6-92 (105)
198 3pgw_A U1-A; protein-RNA compl 99.4 4.6E-12 1.6E-16 116.6 14.8 76 175-253 204-281 (282)
199 2j8a_A Histone-lysine N-methyl 99.4 5.4E-13 1.9E-17 108.9 7.4 75 179-253 3-94 (136)
200 1s79_A Lupus LA protein; RRM, 99.4 1.6E-12 5.4E-17 102.8 8.7 61 274-335 10-71 (103)
201 3s8s_A Histone-lysine N-methyl 99.4 1.6E-12 5.6E-17 103.9 8.8 61 274-335 5-67 (110)
202 1fje_B Nucleolin RBD12, protei 99.4 1.3E-12 4.4E-17 111.5 8.7 76 175-253 96-172 (175)
203 3s7r_A Heterogeneous nuclear r 99.4 2E-12 6.8E-17 98.2 8.7 62 273-335 9-72 (87)
204 1sjq_A Polypyrimidine tract-bi 99.4 1.6E-12 5.4E-17 103.1 8.2 57 274-335 15-71 (105)
205 2lea_A Serine/arginine-rich sp 99.4 5E-13 1.7E-17 110.7 5.4 101 219-335 5-108 (135)
206 2dit_A HIV TAT specific factor 99.4 4.1E-12 1.4E-16 101.6 10.6 77 175-253 12-100 (112)
207 3u1l_A PRE-mRNA-splicing facto 99.4 1.3E-12 4.3E-17 118.5 8.4 76 175-254 131-228 (240)
208 2lkz_A RNA-binding protein 5; 99.4 6.6E-13 2.3E-17 103.5 5.6 61 274-335 8-72 (95)
209 2dnh_A Bruno-like 5, RNA bindi 99.3 3E-12 1E-16 100.7 9.3 62 273-335 13-75 (105)
210 2cq3_A RNA-binding protein 9; 99.3 4.2E-12 1.4E-16 99.6 9.6 62 273-335 13-74 (103)
211 2cqi_A Nucleolysin TIAR; RNA r 99.3 4.4E-12 1.5E-16 99.4 9.6 62 273-335 13-74 (103)
212 1rk8_A CG8781-PA, CG8781-PA pr 99.3 2.6E-12 8.9E-17 109.8 8.9 109 223-335 11-133 (165)
213 2krb_A Eukaryotic translation 99.3 1.9E-12 6.4E-17 97.2 6.9 59 276-335 2-66 (81)
214 2dgv_A HnRNP M, heterogeneous 99.3 4.2E-12 1.4E-16 97.3 8.6 61 274-335 7-67 (92)
215 2d9p_A Polyadenylate-binding p 99.3 3.5E-12 1.2E-16 100.0 8.3 62 273-335 13-74 (103)
216 2cph_A RNA binding motif prote 99.3 4.5E-12 1.5E-16 99.9 8.7 62 273-335 13-77 (107)
217 3bs9_A Nucleolysin TIA-1 isofo 99.3 6.8E-12 2.3E-16 95.0 8.8 61 274-335 5-67 (87)
218 3pgw_S U1-70K; protein-RNA com 99.3 8.5E-13 2.9E-17 129.9 4.8 62 273-335 100-163 (437)
219 2cqc_A Arginine/serine-rich sp 99.3 7.7E-12 2.6E-16 96.3 9.2 62 273-335 13-76 (95)
220 2ywk_A Putative RNA-binding pr 99.3 7.5E-12 2.5E-16 96.5 9.0 61 274-335 15-76 (95)
221 2dgs_A DAZ-associated protein 99.3 6.3E-12 2.2E-16 97.8 8.5 61 274-335 9-71 (99)
222 2err_A Ataxin-2-binding protei 99.3 3.6E-12 1.2E-16 101.4 7.2 63 272-335 26-88 (109)
223 2cqg_A TDP-43, TAR DNA-binding 99.3 8.9E-12 3.1E-16 97.7 9.4 61 273-334 13-75 (103)
224 2do4_A Squamous cell carcinoma 99.3 8.7E-12 3E-16 97.2 9.2 62 273-335 15-77 (100)
225 2dgp_A Bruno-like 4, RNA bindi 99.3 5.9E-12 2E-16 99.1 8.4 62 273-335 11-74 (106)
226 1x4h_A RNA-binding protein 28; 99.3 7.4E-12 2.5E-16 99.3 8.7 62 273-335 13-76 (111)
227 2dgo_A Cytotoxic granule-assoc 99.3 1.1E-11 3.6E-16 99.2 9.7 62 273-335 13-76 (115)
228 1x4e_A RNA binding motif, sing 99.3 5.3E-12 1.8E-16 95.4 7.5 61 274-335 4-66 (85)
229 3ucg_A Polyadenylate-binding p 99.3 9.1E-12 3.1E-16 94.7 8.8 60 274-334 5-66 (89)
230 3md1_A Nuclear and cytoplasmic 99.3 8.6E-12 2.9E-16 93.6 8.5 59 276-335 2-62 (83)
231 2ad9_A Polypyrimidine tract-bi 99.3 5.8E-12 2E-16 102.2 8.0 58 273-335 29-86 (119)
232 3r27_A HnRNP L, heterogeneous 99.3 1E-11 3.4E-16 97.6 9.0 58 273-335 19-76 (100)
233 3mdf_A Peptidyl-prolyl CIS-tra 99.3 5.7E-12 2E-16 95.0 7.4 61 274-335 6-68 (85)
234 2cpf_A RNA binding motif prote 99.3 5.8E-12 2E-16 97.8 7.6 61 274-335 4-69 (98)
235 2cq1_A PTB-like protein L; RRM 99.3 5.6E-12 1.9E-16 99.3 7.5 58 273-335 13-70 (101)
236 2dnz_A Probable RNA-binding pr 99.3 1E-11 3.5E-16 95.7 8.9 61 274-335 4-66 (95)
237 2cqd_A RNA-binding region cont 99.3 9E-12 3.1E-16 99.9 8.7 62 273-335 15-78 (116)
238 1whw_A Hypothetical protein ri 99.3 8.4E-12 2.9E-16 97.0 8.2 61 274-335 7-69 (99)
239 2rs2_A Musashi-1, RNA-binding 99.3 6.4E-12 2.2E-16 100.0 7.6 62 273-335 23-86 (109)
240 2x1f_A MRNA 3'-END-processing 99.3 8.9E-12 3E-16 96.5 8.2 60 275-335 2-63 (96)
241 2dh8_A DAZ-associated protein 99.3 9.2E-12 3.2E-16 97.9 8.4 62 273-335 14-77 (105)
242 2nlw_A Eukaryotic translation 99.3 8.3E-12 2.9E-16 98.5 8.0 61 274-335 14-80 (105)
243 3p5t_L Cleavage and polyadenyl 99.3 4.6E-12 1.6E-16 97.1 6.3 59 276-335 2-64 (90)
244 2dhg_A TRNA selenocysteine ass 99.3 1.4E-11 4.6E-16 96.7 9.0 61 274-335 8-70 (104)
245 1x5u_A Splicing factor 3B subu 99.3 9.7E-12 3.3E-16 97.7 8.1 62 273-335 13-76 (105)
246 2div_A TRNA selenocysteine ass 99.3 1E-11 3.5E-16 96.5 8.1 61 274-335 8-71 (99)
247 2cq0_A Eukaryotic translation 99.3 8.8E-12 3E-16 97.7 7.8 62 273-335 13-76 (103)
248 2e5h_A Zinc finger CCHC-type a 99.3 1.1E-11 3.9E-16 95.3 8.2 61 274-335 15-77 (94)
249 1x5s_A Cold-inducible RNA-bind 99.3 1E-11 3.5E-16 97.0 8.1 61 274-335 11-73 (102)
250 1uaw_A Mouse-musashi-1; RNP-ty 99.3 4.2E-12 1.4E-16 93.9 5.6 59 276-335 1-61 (77)
251 2mss_A Protein (musashi1); RNA 99.3 5.2E-12 1.8E-16 93.1 6.1 58 277-335 1-60 (75)
252 2cpz_A CUG triplet repeat RNA- 99.3 1.1E-11 3.7E-16 99.2 8.3 62 273-335 23-86 (115)
253 1iqt_A AUF1, heterogeneous nuc 99.3 3.9E-12 1.3E-16 93.7 5.3 58 277-335 1-60 (75)
254 1p27_B RNA-binding protein 8A; 99.3 1.7E-11 5.9E-16 96.4 9.2 62 273-335 21-84 (106)
255 1wg5_A Heterogeneous nuclear r 99.3 1.1E-11 3.8E-16 97.7 7.8 61 274-335 14-76 (104)
256 1x5t_A Splicing factor 3B subu 99.3 8.1E-12 2.8E-16 96.4 6.9 61 274-335 4-67 (96)
257 2jrs_A RNA-binding protein 39; 99.3 1.8E-11 6.2E-16 97.2 8.9 62 273-335 24-87 (108)
258 1jmt_A Splicing factor U2AF 35 99.3 3.2E-12 1.1E-16 101.2 4.4 70 183-252 20-103 (104)
259 2dnm_A SRP46 splicing factor; 99.3 1.1E-11 3.7E-16 97.2 7.4 61 274-335 12-74 (103)
260 1wez_A HnRNP H', FTP-3, hetero 99.3 7.4E-12 2.5E-16 98.6 6.5 60 274-335 14-74 (102)
261 3ulh_A THO complex subunit 4; 99.3 1.8E-11 6.3E-16 96.4 8.8 62 273-335 27-89 (107)
262 3v4m_A Splicing factor U2AF 65 99.2 1.4E-11 4.7E-16 97.7 7.9 77 176-252 3-94 (105)
263 1x4b_A Heterogeneous nuclear r 99.2 1.8E-11 6.2E-16 98.1 8.6 62 273-335 25-88 (116)
264 3ns6_A Eukaryotic translation 99.2 4.9E-12 1.7E-16 99.0 5.2 61 274-335 5-73 (100)
265 1x4d_A Matrin 3; structural ge 99.2 8.8E-12 3E-16 98.4 6.5 57 274-335 14-71 (102)
266 2khc_A Testis-specific RNP-typ 99.2 3.1E-11 1.1E-15 96.9 9.9 62 273-335 38-101 (118)
267 2cpy_A RNA-binding protein 12; 99.2 7.2E-12 2.5E-16 100.4 6.2 62 273-335 13-76 (114)
268 1wi8_A EIF-4B, eukaryotic tran 99.2 1.4E-11 4.8E-16 96.8 7.7 59 274-334 14-75 (104)
269 2xs2_A Deleted in azoospermia- 99.2 1E-11 3.5E-16 97.2 6.8 60 274-334 8-68 (102)
270 2la6_A RNA-binding protein FUS 99.2 2.4E-11 8.3E-16 94.5 8.8 61 274-335 12-82 (99)
271 2dgx_A KIAA0430 protein; RRM d 99.2 1.8E-11 6.2E-16 94.9 8.1 60 274-335 8-71 (96)
272 2cq4_A RNA binding motif prote 99.2 2.5E-11 8.6E-16 96.9 9.1 61 273-334 23-85 (114)
273 2hgn_A Heterogeneous nuclear r 99.2 3.3E-12 1.1E-16 106.4 3.9 102 219-335 2-105 (139)
274 2fy1_A RNA-binding motif prote 99.2 2E-11 6.8E-16 98.3 8.3 61 274-335 6-67 (116)
275 1wex_A Hypothetical protein (r 99.2 2.4E-11 8.1E-16 96.2 8.6 57 274-335 14-70 (104)
276 2do0_A HnRNP M, heterogeneous 99.2 2.3E-11 7.9E-16 97.0 8.6 61 274-335 14-75 (114)
277 4a8x_A RNA-binding protein wit 99.2 1.5E-11 5.2E-16 93.1 7.2 61 274-335 3-66 (88)
278 2cqb_A Peptidyl-prolyl CIS-tra 99.2 9.6E-12 3.3E-16 97.2 6.2 61 274-335 11-73 (102)
279 1u6f_A Tcubp1, RNA-binding pro 99.2 2.9E-11 1E-15 99.9 9.3 63 272-335 39-103 (139)
280 1x4a_A Splicing factor, argini 99.2 3.1E-11 1.1E-15 95.6 8.9 61 273-335 20-80 (109)
281 1oo0_B CG8781-PA, drosophila Y 99.2 3.1E-11 1E-15 95.7 8.8 62 273-335 24-87 (110)
282 2kxn_B Transformer-2 protein h 99.2 3E-11 1E-15 99.2 9.0 62 273-335 44-107 (129)
283 3d2w_A TAR DNA-binding protein 99.2 1.7E-11 5.9E-16 94.0 7.0 57 273-333 9-65 (89)
284 3sde_A Paraspeckle component 1 99.2 2.8E-11 9.7E-16 110.6 9.6 78 177-254 95-178 (261)
285 2cpi_A CCR4-NOT transcription 99.2 1.5E-11 5.1E-16 98.1 6.8 62 273-335 13-82 (111)
286 2dng_A Eukaryotic translation 99.2 3.3E-11 1.1E-15 94.5 8.6 59 274-334 14-74 (103)
287 2wbr_A GW182, gawky, LD47780P; 99.2 2.3E-11 7.9E-16 93.0 7.3 57 274-335 6-62 (89)
288 2db1_A Heterogeneous nuclear r 99.2 1.5E-11 5.2E-16 99.3 6.7 61 274-335 16-80 (118)
289 3n9u_C Cleavage and polyadenyl 99.2 2.8E-11 9.7E-16 102.7 8.7 61 274-335 54-118 (156)
290 1x5o_A RNA binding motif, sing 99.2 6.1E-11 2.1E-15 94.6 10.0 62 273-335 23-85 (114)
291 2jwn_A Embryonic polyadenylate 99.2 1.8E-11 6.2E-16 99.1 7.0 62 272-334 33-96 (124)
292 2dnl_A Cytoplasmic polyadenyla 99.2 1.4E-11 4.7E-16 98.8 6.1 60 274-335 7-71 (114)
293 1p1t_A Cleavage stimulation fa 99.2 1.9E-11 6.5E-16 95.8 6.8 61 274-335 7-69 (104)
294 2dnn_A RNA-binding protein 12; 99.2 2.6E-11 8.8E-16 96.8 7.4 60 274-335 15-75 (109)
295 3ex7_B RNA-binding protein 8A; 99.2 3E-11 1E-15 98.1 7.8 62 273-335 20-83 (126)
296 2cpe_A RNA-binding protein EWS 99.2 2.9E-11 9.8E-16 96.3 7.4 62 273-335 13-84 (113)
297 2dha_A FLJ20171 protein; RRM d 99.2 1.6E-11 5.5E-16 100.2 5.9 61 274-335 22-87 (123)
298 2ek1_A RNA-binding protein 12; 99.2 1.4E-11 4.7E-16 95.0 5.2 61 274-335 14-76 (95)
299 2dis_A Unnamed protein product 99.2 3.9E-11 1.3E-15 94.8 8.0 61 274-335 7-71 (109)
300 2hvz_A Splicing factor, argini 99.2 3.5E-11 1.2E-15 93.9 7.5 56 276-335 1-56 (101)
301 1x4c_A Splicing factor, argini 99.2 4.7E-11 1.6E-15 94.6 8.3 56 274-335 14-69 (108)
302 1h2v_Z 20 kDa nuclear CAP bind 99.2 5.7E-11 1.9E-15 100.2 9.1 62 273-335 37-100 (156)
303 2m2b_A RNA-binding protein 10; 99.2 1.7E-11 5.9E-16 100.6 5.7 62 272-335 20-85 (131)
304 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 6.6E-11 2.2E-15 97.5 9.1 63 272-335 60-124 (140)
305 2lmi_A GRSF-1, G-rich sequence 99.2 1.8E-11 6.2E-16 96.9 5.4 61 274-335 10-74 (107)
306 1why_A Hypothetical protein ri 99.2 6.2E-11 2.1E-15 91.8 8.3 57 274-335 16-72 (97)
307 2cqp_A RNA-binding protein 12; 99.2 2.1E-11 7.1E-16 94.6 5.6 61 274-335 14-76 (98)
308 2voo_A Lupus LA protein; RNA-b 99.2 1.2E-10 4E-15 102.3 11.0 101 227-335 63-169 (193)
309 2j76_E EIF-4B, EIF4B, eukaryot 99.2 1.5E-11 5.1E-16 96.1 4.7 60 273-334 17-79 (100)
310 2hgl_A HNRPF protein, heteroge 99.2 2.5E-11 8.6E-16 100.7 6.2 60 274-334 43-106 (136)
311 2kt5_A RNA and export factor-b 99.2 6E-11 2.1E-15 96.2 8.2 61 273-334 33-94 (124)
312 2dnq_A RNA-binding protein 4B; 99.2 7.6E-11 2.6E-15 90.1 8.2 55 274-335 7-61 (90)
313 2dgw_A Probable RNA-binding pr 99.2 7.5E-11 2.6E-15 90.2 8.1 59 274-334 9-68 (91)
314 2ki2_A SS-DNA binding protein 99.2 2.7E-11 9.2E-16 92.4 5.6 58 276-335 2-61 (90)
315 1wf1_A RNA-binding protein RAL 99.2 5.4E-11 1.8E-15 94.4 7.6 55 274-335 26-81 (110)
316 3ue2_A Poly(U)-binding-splicin 99.2 7.1E-11 2.4E-15 95.6 8.3 76 177-252 19-106 (118)
317 2hgm_A HNRPF protein, heteroge 99.2 4.7E-11 1.6E-15 97.8 7.1 60 274-335 41-103 (126)
318 1x4g_A Nucleolysin TIAR; struc 99.2 8.5E-11 2.9E-15 93.1 8.3 58 273-335 23-80 (109)
319 2ytc_A PRE-mRNA-splicing facto 99.2 1.2E-10 4.2E-15 87.7 8.7 57 274-335 11-67 (85)
320 1x4f_A Matrin 3; structural ge 99.2 8.1E-11 2.8E-15 94.4 8.1 58 273-335 23-81 (112)
321 3lqv_A PRE-mRNA branch site pr 99.2 8.5E-11 2.9E-15 93.9 8.2 60 274-335 7-66 (115)
322 1wf0_A TDP-43, TAR DNA-binding 99.1 2.2E-11 7.6E-16 92.7 4.5 57 274-334 4-60 (88)
323 2la4_A Nuclear and cytoplasmic 99.1 1.1E-10 3.7E-15 91.1 7.7 57 274-335 26-82 (101)
324 2cpj_A Non-POU domain-containi 99.1 1.3E-10 4.5E-15 90.3 8.1 58 273-335 13-70 (99)
325 2jvr_A Nucleolar protein 3; RN 99.1 7.2E-11 2.5E-15 94.5 6.7 59 274-335 27-86 (111)
326 2jvo_A Nucleolar protein 3; nu 99.1 9.1E-11 3.1E-15 93.2 7.3 57 272-335 28-84 (108)
327 3beg_B Splicing factor, argini 99.1 7.2E-11 2.5E-15 94.8 6.7 56 274-335 15-70 (115)
328 2dgt_A RNA-binding protein 30; 99.1 1.7E-10 5.7E-15 88.5 8.1 56 273-335 8-63 (92)
329 3tht_A Alkylated DNA repair pr 99.1 1.5E-10 5.3E-15 110.1 9.6 74 175-252 15-96 (345)
330 1fjc_A Nucleolin RBD2, protein 99.1 7.8E-11 2.7E-15 90.9 6.2 59 273-335 14-72 (96)
331 2d9o_A DNAJ (HSP40) homolog, s 99.1 5.9E-10 2E-14 87.5 11.2 62 188-254 27-89 (100)
332 3q2s_C Cleavage and polyadenyl 99.1 1.1E-10 3.7E-15 105.2 8.0 61 274-335 67-131 (229)
333 2a3j_A U1 small nuclear ribonu 99.1 1.5E-10 5.3E-15 94.8 8.2 60 274-335 28-91 (127)
334 2dnp_A RNA-binding protein 14; 99.1 1.7E-10 6E-15 88.0 7.7 56 273-335 7-62 (90)
335 2kvi_A Nuclear polyadenylated 99.1 1.7E-10 5.7E-15 89.3 7.5 56 273-335 8-64 (96)
336 1wel_A RNA-binding protein 12; 99.1 4.8E-11 1.6E-15 96.9 4.5 60 274-334 24-85 (124)
337 2e5j_A Methenyltetrahydrofolat 99.1 1.6E-10 5.6E-15 89.5 7.4 58 274-335 18-75 (97)
338 2xnq_A Nuclear polyadenylated 99.1 2.6E-10 8.9E-15 88.7 8.5 56 273-335 20-76 (97)
339 1whx_A Hypothetical protein ri 99.1 2.1E-10 7.2E-15 91.5 7.6 57 274-335 9-65 (111)
340 1nu4_A U1A RNA binding domain; 99.1 7.1E-11 2.4E-15 91.2 4.6 60 274-335 7-70 (97)
341 2fc9_A NCL protein; structure 99.1 1.5E-10 5.1E-15 90.3 6.4 59 273-335 13-72 (101)
342 2cpx_A Hypothetical protein FL 99.1 3.9E-10 1.3E-14 89.9 8.9 59 274-335 24-86 (115)
343 3s6e_A RNA-binding protein 39; 99.1 4E-10 1.4E-14 90.6 8.8 76 175-252 4-90 (114)
344 2dgu_A Heterogeneous nuclear r 99.1 2.7E-10 9.3E-15 89.2 7.6 55 274-335 10-64 (103)
345 2hzc_A Splicing factor U2AF 65 99.1 3.5E-10 1.2E-14 85.4 7.6 57 274-334 5-71 (87)
346 2e5g_A U6 snRNA-specific termi 99.1 4.9E-10 1.7E-14 86.3 8.2 57 274-334 7-63 (94)
347 1fj7_A Nucleolin RBD1, protein 99.0 6.3E-11 2.1E-15 92.4 3.0 59 274-334 16-76 (101)
348 2f3j_A RNA and export factor b 99.0 3.5E-10 1.2E-14 97.8 7.7 61 274-335 87-148 (177)
349 2cq2_A Hypothetical protein LO 99.0 2.7E-10 9.4E-15 91.5 6.2 57 274-335 24-82 (114)
350 1sjr_A Polypyrimidine tract-bi 99.0 5.8E-10 2E-14 95.1 8.4 59 274-335 45-103 (164)
351 2cqh_A IGF-II mRNA-binding pro 99.0 2.2E-10 7.7E-15 87.9 4.8 56 274-335 7-63 (93)
352 2cpd_A Apobec-1 stimulating pr 99.0 1.2E-09 3.9E-14 84.9 8.8 57 273-335 13-70 (99)
353 2fc8_A NCL protein; structure 99.0 5.5E-10 1.9E-14 87.1 7.0 59 273-335 13-73 (102)
354 3zzy_A Polypyrimidine tract-bi 99.0 8.8E-10 3E-14 90.5 8.2 58 274-335 27-85 (130)
355 2lcw_A RNA-binding protein FUS 98.6 3.9E-11 1.3E-15 96.2 0.0 61 274-335 6-76 (116)
356 3egn_A RNA-binding protein 40; 99.0 2.9E-10 9.9E-15 94.4 5.1 60 274-335 44-111 (143)
357 2e44_A Insulin-like growth fac 99.0 1.1E-09 3.7E-14 84.4 7.6 59 274-335 14-73 (96)
358 1wg1_A KIAA1579 protein, homol 99.0 4.5E-10 1.5E-14 85.5 5.4 56 274-335 4-59 (88)
359 2e5i_A Heterogeneous nuclear r 99.0 1.5E-09 5.1E-14 88.6 8.1 56 275-335 25-81 (124)
360 2j8a_A Histone-lysine N-methyl 98.9 1.4E-09 4.8E-14 88.7 6.3 58 276-334 3-74 (136)
361 1x5p_A Negative elongation fac 98.9 6.4E-09 2.2E-13 80.4 8.8 55 274-335 14-68 (97)
362 2pe8_A Splicing factor 45; RRM 98.9 6.5E-09 2.2E-13 82.2 8.9 62 273-335 6-75 (105)
363 2bz2_A Negative elongation fac 98.8 4.5E-09 1.5E-13 85.2 6.6 56 273-335 37-92 (121)
364 2dnr_A Synaptojanin-1; RRM dom 98.8 1.2E-08 4.2E-13 78.0 7.6 71 177-253 6-84 (91)
365 1owx_A Lupus LA protein, SS-B, 98.8 1.7E-08 5.8E-13 81.7 8.4 71 177-251 17-92 (121)
366 3tht_A Alkylated DNA repair pr 98.8 8.1E-09 2.8E-13 98.2 6.8 58 273-335 16-75 (345)
367 3u1l_A PRE-mRNA-splicing facto 98.7 1.1E-08 3.9E-13 92.5 6.6 57 274-335 133-198 (240)
368 2diu_A KIAA0430 protein; struc 98.7 2.1E-08 7.3E-13 77.3 6.5 52 276-335 10-65 (96)
369 2d9o_A DNAJ (HSP40) homolog, s 98.7 5.5E-08 1.9E-12 76.2 8.4 47 285-335 27-73 (100)
370 2dit_A HIV TAT specific factor 98.7 5E-08 1.7E-12 77.6 7.7 60 273-335 13-83 (112)
371 1ufw_A Synaptojanin 2; RNP dom 98.6 5.9E-08 2E-12 74.6 6.0 70 177-252 14-92 (95)
372 3v4m_A Splicing factor U2AF 65 98.6 5.6E-08 1.9E-12 76.7 6.1 61 274-335 4-78 (105)
373 1jmt_A Splicing factor U2AF 35 98.5 3.5E-08 1.2E-12 77.7 3.0 55 280-335 20-87 (104)
374 1owx_A Lupus LA protein, SS-B, 98.5 2E-07 7E-12 75.3 7.1 57 274-335 17-75 (121)
375 3ue2_A Poly(U)-binding-splicin 98.5 1.9E-07 6.5E-12 75.3 6.1 61 274-335 19-90 (118)
376 3dxb_A Thioredoxin N-terminall 98.4 3.6E-07 1.2E-11 81.1 7.0 64 189-252 140-210 (222)
377 3s6e_A RNA-binding protein 39; 98.3 1.8E-06 6.3E-11 69.0 7.2 59 274-335 6-74 (114)
378 2l9w_A U4/U6 snRNA-associated- 98.2 9.7E-06 3.3E-10 63.7 9.4 74 174-251 17-96 (117)
379 2dhx_A Poly (ADP-ribose) polym 98.1 3.4E-05 1.2E-09 60.0 10.5 89 176-288 6-99 (104)
380 2dnr_A Synaptojanin-1; RRM dom 97.5 0.0002 6.9E-09 54.5 6.0 54 275-335 7-68 (91)
381 3dxb_A Thioredoxin N-terminall 97.2 0.00036 1.2E-08 61.5 5.9 49 286-335 140-194 (222)
382 1ufw_A Synaptojanin 2; RNP dom 97.2 0.00056 1.9E-08 52.4 5.9 55 274-335 14-77 (95)
383 1wwh_A Nucleoporin 35, nucleop 97.1 0.0016 5.5E-08 52.0 8.0 72 176-252 22-94 (119)
384 1wey_A Calcipressin 1; structu 96.9 0.002 6.7E-08 50.2 6.7 73 177-253 4-82 (104)
385 1whv_A Poly(A)-specific ribonu 96.9 0.0033 1.1E-07 48.2 7.7 55 175-236 13-67 (100)
386 1uw4_A UPF3X; nonsense mediate 96.9 0.0047 1.6E-07 47.0 8.5 67 179-245 2-73 (91)
387 2dhx_A Poly (ADP-ribose) polym 96.6 0.0095 3.2E-07 46.2 7.9 56 274-335 7-66 (104)
388 1whv_A Poly(A)-specific ribonu 96.5 0.0042 1.4E-07 47.7 5.6 53 275-335 16-68 (100)
389 2l9w_A U4/U6 snRNA-associated- 96.3 0.012 4E-07 46.2 7.3 56 274-333 20-79 (117)
390 3ctr_A Poly(A)-specific ribonu 96.1 0.0069 2.4E-07 46.6 4.9 52 276-335 7-58 (101)
391 3pq1_A Poly(A) RNA polymerase; 95.9 0.004 1.4E-07 61.1 3.5 64 171-238 46-109 (464)
392 3ctr_A Poly(A)-specific ribonu 95.8 0.0094 3.2E-07 45.9 4.4 50 180-236 8-57 (101)
393 3pq1_A Poly(A) RNA polymerase; 95.4 0.008 2.7E-07 59.0 3.2 60 272-336 50-109 (464)
394 2l08_A Regulator of nonsense t 95.1 0.025 8.5E-07 43.4 4.6 68 178-245 9-81 (97)
395 1uw4_A UPF3X; nonsense mediate 95.1 0.092 3.1E-06 39.8 7.8 56 276-332 2-61 (91)
396 3p3d_A Nucleoporin 53; structu 94.8 0.022 7.4E-07 46.1 3.8 73 179-252 8-96 (132)
397 1wwh_A Nucleoporin 35, nucleop 93.8 0.19 6.4E-06 40.0 7.2 56 274-335 23-78 (119)
398 1wey_A Calcipressin 1; structu 91.5 0.32 1.1E-05 37.6 5.5 55 274-333 4-63 (104)
399 2l08_A Regulator of nonsense t 89.3 0.23 7.8E-06 38.0 2.9 57 275-332 9-69 (97)
400 1jgn_B PAIP2, polyadenylate-bi 84.8 0.24 8.3E-06 27.4 0.5 14 96-109 4-17 (26)
401 3d45_A Poly(A)-specific ribonu 83.4 2.5 8.7E-05 41.7 7.6 54 178-238 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 76.9 5.1 0.00018 39.5 7.3 53 275-335 440-492 (507)
403 3p3d_A Nucleoporin 53; structu 74.9 1.5 5.1E-05 35.3 2.3 58 276-335 8-81 (132)
404 3j21_T 50S ribosomal protein L 56.5 36 0.0012 25.1 6.5 55 277-332 24-79 (86)
405 4e8u_A Putative uncharacterize 52.7 36 0.0012 28.5 6.7 59 179-238 13-83 (172)
406 1vq8_S 50S ribosomal protein L 45.4 48 0.0016 24.3 5.7 55 277-332 23-78 (85)
407 1jh4_B PAIP1, polyadenylate-bi 39.2 11 0.00039 21.1 1.0 17 95-111 3-19 (26)
408 3u5e_X 60S ribosomal protein L 35.7 75 0.0026 25.6 5.9 55 277-332 80-135 (142)
409 2fcg_F Cationic, antibacterial 35.4 28 0.00096 19.6 2.3 23 81-103 2-24 (26)
410 4a17_R RPL23A, 60S ribosomal p 34.5 82 0.0028 25.7 5.9 55 277-332 88-143 (150)
411 2zkr_s 60S ribosomal protein L 33.3 86 0.0029 25.7 5.9 55 277-332 94-149 (156)
412 3iz5_X 60S ribosomal protein L 27.8 89 0.003 25.5 5.1 55 277-332 90-145 (152)
413 4e8u_A Putative uncharacterize 26.5 98 0.0034 25.8 5.2 50 276-327 13-73 (172)
414 1vd2_A Protein kinase C, IOTA 21.6 2E+02 0.0067 21.1 5.6 54 278-336 17-74 (89)
415 2g0c_A ATP-dependent RNA helic 21.5 2E+02 0.0068 19.6 5.5 66 180-252 2-74 (76)
416 3tve_T 50S ribosomal protein L 20.8 2.6E+02 0.0088 20.6 6.2 50 277-326 22-84 (92)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=5.4e-29 Score=222.44 Aligned_cols=147 Identities=24% Similarity=0.349 Sum_probs=130.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.+.+||||+|||+++|+++|+++|++||.|.+|+|++++.+ ++|||||+|.+.++|.+||+ +++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999998765 68999999999999999997 9999999999999986
Q ss_pred CCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 253 k~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
... .........+|||+|||..+|+++|+++|++| |.|..|+|+++.+.++|||||+|.+.++|.+|
T Consensus 93 ~~~------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 93 QRD------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp CCC------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTEEEEEEEEEESSHHHHHHH
T ss_pred ccc------------ccccccccccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccCCCCceEEEEEeCCHHHHHHH
Confidence 321 11122345789999999999999999999997 99999999999877899999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
|+.
T Consensus 160 i~~ 162 (213)
T 4f02_A 160 IEK 162 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.9e-28 Score=214.21 Aligned_cols=153 Identities=18% Similarity=0.304 Sum_probs=131.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEcc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~ 251 (337)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+||++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 3456789999999999999999999999999999999998764 68999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A 329 (337)
+........ .......++|||+|||..+|+++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 753221111 1112355899999999999999999999997 999999999884 67899999999999999
Q ss_pred HHHHHh
Q 019691 330 FSWHAC 335 (337)
Q Consensus 330 ~~Ale~ 335 (337)
.+||+.
T Consensus 160 ~~A~~~ 165 (196)
T 1l3k_A 160 DKIVIQ 165 (196)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999974
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-28 Score=205.53 Aligned_cols=144 Identities=20% Similarity=0.308 Sum_probs=128.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~ 256 (337)
|+|||+|||+++++++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ +++..+.|++|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999988865 78999999999999999996 99999999999999874321
Q ss_pred CCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 257 ~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
. .......+|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|++
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 1 112356899999999999999999999997 999999999873 6789999999999999999997
Q ss_pred h
Q 019691 335 C 335 (337)
Q Consensus 335 ~ 335 (337)
.
T Consensus 148 ~ 148 (166)
T 3md3_A 148 S 148 (166)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=2.4e-27 Score=201.31 Aligned_cols=143 Identities=22% Similarity=0.401 Sum_probs=128.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
+++|||+|||+++++++|+++|+.||.|.+++++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999998744 58999999999999999998 999999999999998642
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~A 332 (337)
.. .....++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 11 12245889999999999999999999997 999999999874 66899999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
++.
T Consensus 147 ~~~ 149 (167)
T 1fxl_A 147 IKG 149 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 973
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=1.7e-27 Score=204.03 Aligned_cols=145 Identities=23% Similarity=0.340 Sum_probs=126.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEEcCHHHHHHHHH-hCCeEec---ccceE
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVR 248 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~----~kg~aFV~F~~~e~A~~Al~-l~g~~l~---g~~I~ 248 (337)
+.++|||+|||+++++++|+++|+.||.|.+|++++++.+ ++|||||+|.+.++|.+|++ |++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5689999999999999999999999999999999988765 58999999999999999998 9998765 57777
Q ss_pred EccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChH
Q 019691 249 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVS 327 (337)
Q Consensus 249 V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e 327 (337)
+.++.... ......++|||+|||..+|+++|+++|++| |.|..+.++++. +.++|||||+|.+.+
T Consensus 82 ~~~~~~~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEK-------------NNAVEDRKLFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGC-------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Eccccccc-------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhC-CCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 77753211 112356899999999999999999999997 999999999874 678999999999999
Q ss_pred HHHHHHHh
Q 019691 328 EPFSWHAC 335 (337)
Q Consensus 328 ~A~~Ale~ 335 (337)
+|.+|++.
T Consensus 148 ~A~~A~~~ 155 (175)
T 3nmr_A 148 MAQTAIKA 155 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999964
No 6
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.9e-27 Score=211.96 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=128.5
Q ss_pred CCCEEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp-~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
..++|||+||| ..+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+||+ |+|..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 46799999999 799999999999999999999998764 5999999999999999998 999999999999999864
Q ss_pred CCC-CCCCC-----------CCC----CCcc-------ccccccceeeEeCCCCCCCHHHHHHHHhhcCCce--EEEEEe
Q 019691 255 AIA-PVNPT-----------FLP----RSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV--QRLRLL 309 (337)
Q Consensus 255 ~~~-~~~~~-----------~~p----~~~~-------~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I--~~v~i~ 309 (337)
... +..+. +.. +... ....+.++|||+|||+.+|+++|+++|++| |.| ..++++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~-G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL-GVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH-TCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEEE
Confidence 322 11100 000 0000 001245789999999999999999999998 998 899999
Q ss_pred ccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 310 GDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 310 ~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+.+.++|+|||+|.+.++|.+||+.
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 88766779999999999999999974
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1.9e-27 Score=202.61 Aligned_cols=144 Identities=23% Similarity=0.393 Sum_probs=129.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++++++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999988654 68999999999999999997 99999999999999975
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~ 331 (337)
... .....++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+
T Consensus 82 ~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGKY-GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCS--------------STTTTCEEEEESCCTTCCHHHHHHHHTSS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCc--------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcC-CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 221 11245899999999999999999999997 999999999874 6789999999999999999
Q ss_pred HHHh
Q 019691 332 WHAC 335 (337)
Q Consensus 332 Ale~ 335 (337)
|++.
T Consensus 147 A~~~ 150 (168)
T 1b7f_A 147 AISA 150 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=3.1e-27 Score=209.57 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=129.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||.++++++|+++|+.||.|.+|++++++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 345789999999999999999999999999999999988744 68999999999999999998 999999999999987
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHH
Q 019691 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEP 329 (337)
Q Consensus 252 sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A 329 (337)
+........ . . ..........++|||+|||..+++++|+++|++| |.|..|.++++ .+.++|||||+|.+.++|
T Consensus 105 ~~~~~~~~~-~-~-~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 105 PSNIGQAQP-I-I-DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF-GKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp CSCCGGGHH-H-H-HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCccccch-h-h-hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 542110000 0 0 0000112356899999999999999999999997 99999999987 367899999999999999
Q ss_pred HHHHHh
Q 019691 330 FSWHAC 335 (337)
Q Consensus 330 ~~Ale~ 335 (337)
.+|++.
T Consensus 181 ~~A~~~ 186 (216)
T 2qfj_A 181 QDAVSS 186 (216)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=3.1e-27 Score=201.27 Aligned_cols=143 Identities=17% Similarity=0.270 Sum_probs=126.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+ ++|||||+|.+.++|.+|+. .+..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 4689999999999999999999999999999999998754 78999999999999999998 35789999999887531
Q ss_pred CCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHH
Q 019691 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~A 332 (337)
.......++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|
T Consensus 81 --------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 --------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQW-GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp --------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTT-SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred --------------hhhccCCCeEEECCCCCCCCHHHHHHHHHhC-ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 1112356899999999999999999999997 999999999874 67899999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
+++
T Consensus 146 ~~~ 148 (167)
T 2cjk_A 146 CQN 148 (167)
T ss_dssp HHC
T ss_pred HhC
Confidence 973
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=5.9e-26 Score=194.25 Aligned_cols=140 Identities=21% Similarity=0.322 Sum_probs=124.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEeccc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~----G-------~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~ 245 (337)
+.++|||+|||+++|+++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+.+++..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 46899999999999999999999999 7 7888887655 5899999999999999999999999999
Q ss_pred ceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEe
Q 019691 246 PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEF 323 (337)
Q Consensus 246 ~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF 323 (337)
+|+|.++..... ....++|||+|||..+++++|+++|++| |.|..+.++++ .+.++|||||+|
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEe
Confidence 999998643211 1236899999999999999999999997 99999999988 467899999999
Q ss_pred CChHHHHHHHHh
Q 019691 324 AMVSEPFSWHAC 335 (337)
Q Consensus 324 ~~~e~A~~Ale~ 335 (337)
.+.++|.+|++.
T Consensus 144 ~~~~~A~~A~~~ 155 (172)
T 2g4b_A 144 VDINVTDQAIAG 155 (172)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999974
No 11
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.9e-25 Score=205.53 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=125.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||+++|+++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|+. +++..+.|++|+|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 456689999999999999999999999999999999765 4899999999999999998 99999999999999863
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~A 332 (337)
...+|||+|||..+|+++|+++|+.| |.|..|.++.+ .+.++|||||+|.+.++|.+|
T Consensus 95 --------------------~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 95 --------------------HGAALTVKNLSPVVSNELLEQAFSQF-GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp --------------------CSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred --------------------cCCcccccCCCCCCCHHHHHHHHHhc-CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 24789999999999999999999997 99999999988 467899999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
|+.
T Consensus 154 ~~~ 156 (261)
T 3sde_A 154 LER 156 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2.9e-25 Score=194.21 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=126.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEeccc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~----G-------~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~ 245 (337)
..++|||+|||+++++++|+++|+.| | .|.++++... +|||||+|.+.++|.+||.|++..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~----~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT----TTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC----CCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 46899999999999999999999999 5 6777776543 5899999999999999999999999999
Q ss_pred ceEEccCCCCCCCCCCCC-----CCC-CccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCce
Q 019691 246 PVRVLPSKTAIAPVNPTF-----LPR-SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTR 317 (337)
Q Consensus 246 ~I~V~~sk~~~~~~~~~~-----~p~-~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g 317 (337)
+|+|.+++.........- .+. .........++|||+|||..+++++|+++|++| |.|..+.++.+ .+.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-SCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccEEEEeecCCCCCcce
Confidence 999998754322111000 000 011112467999999999999999999999997 99999999988 467899
Q ss_pred EEEEEeCChHHHHHHHHh
Q 019691 318 IAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 318 ~aFVeF~~~e~A~~Ale~ 335 (337)
||||+|.+.++|.+|++.
T Consensus 158 ~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 999999999999999974
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=9.6e-26 Score=209.84 Aligned_cols=142 Identities=20% Similarity=0.308 Sum_probs=122.9
Q ss_pred cccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 171 ~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
....+...++|||+|||+++|+++|+++|+.||.|..|+++.++.+++|||||+|.+.++|.+|+++++..+.|++|.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 33445678999999999999999999999999999999999988778899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC-CCCceEEEEEeCChHH
Q 019691 251 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY-QHSTRIAFVEFAMVSE 328 (337)
Q Consensus 251 ~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~-~~~~g~aFVeF~~~e~ 328 (337)
++ ..++|||+|||..+++++|+++|++| | .|..|.++.+. +.++|||||+|.+.++
T Consensus 114 ~~---------------------~~~~l~v~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 114 HL---------------------TECTLWMTNFPPSYTQRNIRDLLQDI-NVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp EC---------------------CSCEEEEECCCTTCCHHHHHHHHHHT-TCCCCEEECC-------CCEEEEECSSHHH
T ss_pred EC---------------------CCCEEEEECCCCCCCHHHHHHHHHHh-CCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 84 35899999999999999999999997 9 99999999875 6789999999999999
Q ss_pred HHHHHH
Q 019691 329 PFSWHA 334 (337)
Q Consensus 329 A~~Ale 334 (337)
|.+|++
T Consensus 172 a~~A~~ 177 (292)
T 2ghp_A 172 ARYCVE 177 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=3.5e-26 Score=196.67 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=121.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~-~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
.+...++|||+|||.++++++|+++|..||.+..+.+.... ..++|||||+|.+.++|.+|++|++..+.|++|+|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 45577899999999999999999999999877552222111 22689999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 253 k~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
..... ......++|||+|||..+++++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+|
T Consensus 89 ~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~-g~v~~~---~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 89 KGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV---SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp CCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTTC-SEEEEE---CSSSSCCSEEEEECSSHHHHHHH
T ss_pred CCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHhc-CeEEEe---cCCCCCceEEEEEECCHHHHHHH
Confidence 53211 112356899999999999999999999997 988777 55678899999999999999999
Q ss_pred HHh
Q 019691 333 HAC 335 (337)
Q Consensus 333 le~ 335 (337)
|+.
T Consensus 153 ~~~ 155 (175)
T 1fje_B 153 LEE 155 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=5.7e-25 Score=198.42 Aligned_cols=156 Identities=26% Similarity=0.321 Sum_probs=127.5
Q ss_pred cCCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 173 QDEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
......++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++ |++..+.|++|+|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3345778999999999 99999999999999999999999886 5899999999999999997 99999999999999
Q ss_pred cCCCCCCCCCCC------------------CC-CCCc--cccccccceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEE
Q 019691 251 PSKTAIAPVNPT------------------FL-PRSE--DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRL 308 (337)
Q Consensus 251 ~sk~~~~~~~~~------------------~~-p~~~--~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i 308 (337)
+++......... +. +... .....+.++|||+|||..+++++|+++|++| | .|..|++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i 184 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKF 184 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEE
Confidence 876432111000 00 0000 0012346899999999999999999999997 9 9999999
Q ss_pred eccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 309 LGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 309 ~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.+ .+|||||+|.+.++|.+|++.
T Consensus 185 ~~~---~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 185 FQK---DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSS---STTCEEEEESSHHHHHHHHHH
T ss_pred EEC---CCcEEEEEECCHHHHHHHHHH
Confidence 663 256999999999999999973
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=8.4e-26 Score=210.22 Aligned_cols=227 Identities=15% Similarity=0.209 Sum_probs=159.8
Q ss_pred CCCCceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCC
Q 019691 60 GAGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTD 139 (337)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 139 (337)
....+.+.|--++... +..+|.++|++++++..+.++...... .+++-+.|... .....+
T Consensus 38 ~~~~~~l~V~nLp~~~-----------t~~~l~~~F~~~G~i~~v~i~~~~~~~--~g~afV~f~~~-----~~A~~A-- 97 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSY-----------NQNKVYKYFKHCGPIIHVDVADSLKKN--FRFARIEFARY-----DGALAA-- 97 (292)
T ss_dssp ----CEEEEEEECTTC-----------CHHHHHHHHGGGSCEEEEEEEECTTSS--SEEEEEEESSH-----HHHHHH--
T ss_pred CCCCCEEEEeCCCCCC-----------CHHHHHHHHHhcCCeEEEEEEECCCCC--cEEEEEEECCH-----HHHHHH--
Confidence 3455677775566555 778999999999999999988765432 22221111000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCC-C
Q 019691 140 GTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNS-V 217 (337)
Q Consensus 140 ~~~~~~g~~~~~r~~~~~~~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G-~V~~v~i~~d~~~-~ 217 (337)
-. ..+..-+.+.+.. .....++|||+|||+.+++++|+++|..|| .|..|+++.++.+ +
T Consensus 98 -----------~~-~~~~~~~g~~i~v-------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~ 158 (292)
T 2ghp_A 98 -----------IT-KTHKVVGQNEIIV-------SHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTS 158 (292)
T ss_dssp -----------HT-TTTCEETTEECEE-------EECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------
T ss_pred -----------HH-hCCcEeCCcEEEE-------EECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCc
Confidence 00 0111111111111 122578999999999999999999999999 9999999988754 6
Q ss_pred ceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCC-CCHHHHHHH
Q 019691 218 LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKK-VTQGDIKLF 295 (337)
Q Consensus 218 kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~-~tee~L~~~ 295 (337)
+|||||+|.+.++|.+|+. |++..+.|++|+|.++........ ........++|||+|||.. +++++|+++
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~ 231 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKR-------TDSATLEGREIMIRNLSTELLDENLLRES 231 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccccc-------ccccCCCCceEEEECCCcccCCHHHHHHH
Confidence 8999999999999999998 999999999999999753221111 0112335689999999999 999999999
Q ss_pred HhhcCCceEEEEEeccC---CCCceEEEEEeCChHHHHHHH
Q 019691 296 FESVCGEVQRLRLLGDY---QHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 296 F~~~~G~I~~v~i~~d~---~~~~g~aFVeF~~~e~A~~Al 333 (337)
|++| |.|..|.++++. +.++|||||+|.+.++|.+||
T Consensus 232 F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 232 FEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp HGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred Hhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 9997 999999999874 678999999999999999998
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=1.1e-24 Score=201.76 Aligned_cols=157 Identities=21% Similarity=0.339 Sum_probs=126.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~----~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
+....++|||+|||.++++++|+ ++|+.||.|.+|++.++ ..++|||||+|.+.++|.+|++ |+|..+.|++|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 34567899999999999999966 89999999999998863 3378999999999999999996 999999999999
Q ss_pred EccCCCCCCC---CCCCCC-------------------------------------------------------------
Q 019691 249 VLPSKTAIAP---VNPTFL------------------------------------------------------------- 264 (337)
Q Consensus 249 V~~sk~~~~~---~~~~~~------------------------------------------------------------- 264 (337)
|.+++..... ....+.
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 9987543210 000000
Q ss_pred -------------CC--------------------CccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc
Q 019691 265 -------------PR--------------------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD 311 (337)
Q Consensus 265 -------------p~--------------------~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d 311 (337)
+. .........++|||+|||..+++++|+++|++| |.|..|+++.+
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecC
Confidence 00 000112246889999999999999999999997 99999999876
Q ss_pred CCCCceEEEEEeCChHHHHHHHHh
Q 019691 312 YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 312 ~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
. +|||||+|.+.++|.+||+.
T Consensus 243 ~---~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 243 R---HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred C---CcEEEEEeCCHHHHHHHHHH
Confidence 4 46999999999999999974
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=4.6e-25 Score=193.72 Aligned_cols=152 Identities=26% Similarity=0.299 Sum_probs=125.5
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
.+++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++ |++..+.|++|+|.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 468999999999 99999999999999999999999876 5899999999999999998 999999999999998764
Q ss_pred CCCCCCC------------------CCCC-CC--ccccccccceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC
Q 019691 255 AIAPVNP------------------TFLP-RS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 312 (337)
Q Consensus 255 ~~~~~~~------------------~~~p-~~--~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~ 312 (337)
....... .+.+ .. ......+.++|||+|||..+++++|+++|++| | .|..+.++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQKD 157 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESSTT
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeCC
Confidence 3211100 0000 00 00011347899999999999999999999997 9 99999997643
Q ss_pred CCCceEEEEEeCChHHHHHHHHh
Q 019691 313 QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 313 ~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+|+|||+|.+.++|.+|++.
T Consensus 158 ---~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 158 ---RKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp ---SSCEEEECSSHHHHHHHHHH
T ss_pred ---CcEEEEEeCCHHHHHHHHHH
Confidence 57999999999999999974
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=7.4e-25 Score=203.05 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=130.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|+. |++..+.|++|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4579999999999999999999999999999999988754 68999999999999999996 99999999999999975
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCC-CHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV-TQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~-tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~ 331 (337)
..... ......++|||+|||..+ ++++|+++|++| |.|..+.++.+. +.++|+|||+|.+.++|.+
T Consensus 174 ~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQLT-----------PALLHSRCLCVDRLPPGFNDVDALCRALSAV-HSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp GGGCC-----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS-SCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred CCCCC-----------cccCCccEEEEecCCcccCCHHHHHHHhhCC-CCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 32211 112356899999999995 999999999997 999999999874 6789999999999999999
Q ss_pred HHHh
Q 019691 332 WHAC 335 (337)
Q Consensus 332 Ale~ 335 (337)
|++.
T Consensus 242 A~~~ 245 (284)
T 3smz_A 242 AQQQ 245 (284)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=3.9e-24 Score=198.15 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=122.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...+++|||+|||+++|+++|+++|+.|| |.++++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD----KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE----TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe----cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 34678999999999999999999999999 9999883 346899999999999999997 99999999999999842
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHH
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFS 331 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~ 331 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+
T Consensus 94 --------------------~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 --------------------TDALLCVANLPPSLTQQQFEELVRPF-GSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp --------------------CSCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred --------------------CCCEEEEcCCCCcCCHHHHHHHHHhc-CCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 33799999999999999999999997 999999998873 6789999999999999999
Q ss_pred HHHh
Q 019691 332 WHAC 335 (337)
Q Consensus 332 Ale~ 335 (337)
|++.
T Consensus 153 A~~~ 156 (284)
T 3smz_A 153 AKSD 156 (284)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9953
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.1e-21 Score=156.99 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
...+|||+|||+++++++|+++|+.||.|.+|+|+.++.+++|||||+|.+.++|.+||+ |++..+.|++|+|.+++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 457899999999999999999999999999999999987789999999999999999997 9999999999999987532
Q ss_pred CCCCCCCCCCCCccccccccceeeEeCCCCCCCHHH
Q 019691 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGD 291 (337)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~ 291 (337)
.... ...........+|||+|||+.+|++.
T Consensus 84 ~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------
T ss_pred cccc------cccccccCCCCceEeCCCCCCccccc
Confidence 1111 11111223456899999999999874
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=133.84 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++|+++|+++|+.||.|.+|++++++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999999998765 68999999999999999997 99999999999999975
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=3.9e-17 Score=138.44 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=90.0
Q ss_pred EEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeE-------ecccceEEccCCCCCCCCCCCCCCCCcccccccccee
Q 019691 207 DCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM-------LGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTI 278 (337)
Q Consensus 207 ~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~-------l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l 278 (337)
.++++.+...++|||||+|.+.++|++|+. +++.. +.+............ ............+|
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSH--------HHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCC--------CSSCCCCCCBCCEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccc--------ccccccCCCCCCEE
Confidence 567788877789999999999999999996 55422 222222222111000 00011112356899
Q ss_pred eEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 279 ~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
||+|||+.+++++|+++|++| |.|..|.++.+ .+.++|||||+|.+.++|.+||+.
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHH-SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 999999999999999999997 99999999987 477999999999999999999974
No 24
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=125.85 Aligned_cols=80 Identities=30% Similarity=0.421 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||+.+++++|+++|+.||.|..|+|+.++.+++|||||+|.+.++|.+|+. |++..+.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 45678999999999999999999999999999999999987789999999999999999998 99999999999999986
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=130.70 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||+++++++|+++|++||.|.+|+|++++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999875 68999999999999999998 9999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-16 Score=125.12 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||.++++++|+++|+.||.|..|+|+.++..++|||||+|.+.++|.+|+. |++..|.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45678999999999999999999999999999999999887789999999999999999998 99999999999999975
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 27
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=128.45 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=81.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~ 257 (337)
++|||+|||+++++++|+++|+.||.|..|+++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 48999999999999999999999999999999988 57999999999999999998 999999999999999865432
Q ss_pred CCCCCCCCCCccccccccceeeEeCCC
Q 019691 258 PVNPTFLPRSEDEREMCSRTIYCTNID 284 (337)
Q Consensus 258 ~~~~~~~p~~~~~~~~~~~~l~V~NLp 284 (337)
.... .....+.....+|||+||+
T Consensus 78 ~~~~----~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRF----DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCC----CSCCCSCCCCSCCCSCCCC
T ss_pred cccC----CCCCccccCCCceecCCCC
Confidence 2111 1111122346889999997
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=2e-16 Score=127.16 Aligned_cols=82 Identities=20% Similarity=0.423 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.....++|||+|||.++++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||+ |++..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446689999999999999999999999999999999998754 68999999999999999997 99999999999999
Q ss_pred cCCCC
Q 019691 251 PSKTA 255 (337)
Q Consensus 251 ~sk~~ 255 (337)
+++..
T Consensus 101 ~a~~~ 105 (115)
T 2cpz_A 101 LKRSK 105 (115)
T ss_dssp CCCCS
T ss_pred EcCCC
Confidence 97643
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=3.2e-16 Score=125.87 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=76.0
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
......++|||+|||..+++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||+ |++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33457789999999999999999999999999999999998644 68999999999999999997 9999999999999
Q ss_pred ccCCCCC
Q 019691 250 LPSKTAI 256 (337)
Q Consensus 250 ~~sk~~~ 256 (337)
.+++...
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9986543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=127.27 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-h-CCeEecccceEEccC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 252 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G-~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l-~g~~l~g~~I~V~~s 252 (337)
+++|||+|||+++|+++|+++|+.|| .|.+|++++++.+ ++|||||+|.+.++|.+||+ + ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999998765 78999999999999999998 5 467899999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=3.2e-17 Score=131.74 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=89.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||..+++++|+++|+.||.|..|.++.+.. ++|||||+|.+.++|.+|+. |+|..+.|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999987644 48999999999999999998 99999999999999964
Q ss_pred CCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHhhcCC
Q 019691 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (337)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G 301 (337)
... . . .+++...++++|.++|++| |
T Consensus 84 ~~~---------------~---~----~~~~~~~~~~~l~~~~~~~-g 108 (115)
T 3lqv_A 84 ANR---------------A---F----QKMDTKKKEEQLKLLKEKY-G 108 (115)
T ss_dssp HHH---------------H---T----TTSCHHHHHHHHHHHHHHH-C
T ss_pred CCh---------------h---h----hhhhHhHhHHHHHHHHHHh-C
Confidence 110 0 0 5677788999999999998 6
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=9e-17 Score=121.82 Aligned_cols=79 Identities=30% Similarity=0.414 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||+++++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999888654 58999999999999999997 999999999999998
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 33
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=122.66 Aligned_cols=79 Identities=27% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+...++|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |++..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999999988764 58999999999999999998 999999999999999
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 34
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=127.71 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=74.5
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEcc
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~ 251 (337)
+.+...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.. ++|||||+|.+.++|.+||.+++..+.|++|.|.+
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44556789999999999999999999999999999999988764 78999999999999999999999999999999998
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=122.97 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++|++..+.|++|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 446789999999999999999999999999999999988754 689999999999999999999999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 36
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=122.81 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 346789999999999999999999999999999999988764 68999999999999999997 999999999999998
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 37
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.7e-16 Score=121.01 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=72.7
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
..+...++|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+++++..+.|++|+|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557789999999999999999999999999999999988764 6899999999999999999988999999999998
Q ss_pred cC
Q 019691 251 PS 252 (337)
Q Consensus 251 ~s 252 (337)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=124.40 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456789999999999999999999999999999999988654 68999999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=3.9e-16 Score=123.22 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecc---cceEE
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGF---YPVRV 249 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g---~~I~V 249 (337)
....++|||+|||.++++++|+++|+.||.|..|+|+.++.. ++|||||+|.+.++|.+|++ |++..+.+ ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346789999999999999999999999999999999998754 58999999999999999998 99999988 99999
Q ss_pred ccCCCC
Q 019691 250 LPSKTA 255 (337)
Q Consensus 250 ~~sk~~ 255 (337)
.+++..
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998643
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=123.09 Aligned_cols=79 Identities=34% Similarity=0.510 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||+.+++++|+++|+.||.|..|+++.++.. ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 446689999999999999999999999999999999988764 58999999999999999998 9999999999999987
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=4.2e-17 Score=125.59 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=67.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G--~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
.+|||+|||.++++++|+++|+.|| .|.+++++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999998754 68999999999999999997 99999999999999975
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=120.82 Aligned_cols=79 Identities=28% Similarity=0.418 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999998754 68999999999999999998 9999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=120.47 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999998644 68999999999999999998 9999999999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=122.30 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |++..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999988744 68999999999999999996 999999999999999
Q ss_pred CCCC
Q 019691 252 SKTA 255 (337)
Q Consensus 252 sk~~ 255 (337)
++..
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=124.84 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999988764 68999999999999999998 99999999999999
Q ss_pred cCCCC
Q 019691 251 PSKTA 255 (337)
Q Consensus 251 ~sk~~ 255 (337)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98643
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.9e-16 Score=122.46 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||.++++++|+++|+.||.|..|++..+. .++|||||+|.+.++|.+|++ |++..|.|++|+|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3466899999999999999999999999999999996653 368999999999999999996 99999999999999986
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 98 ~ 98 (109)
T 1x4a_A 98 S 98 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=121.50 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||.++++++|+++|..||.|..|+++.++.. ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446789999999999999999999999999999999998843 58999999999999999997 9999999999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 94 ~ 94 (100)
T 2do4_A 94 N 94 (100)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=121.95 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 177 IRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~----~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
..++|||+|||.++++++|+ ++|+.||.|.+|+++.++.+ +|||||+|.+.++|.+|++ |+|..+.|++|+|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 55799999999999999999 99999999999999998877 8999999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 49
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=123.43 Aligned_cols=80 Identities=34% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999999999999999999999999999999998754 68999999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 92 a~~ 94 (105)
T 1x5u_A 92 ASA 94 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 754
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=122.69 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~-----~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
...++|||+|||.++++++|+++|+.||.|..|++..++. .++|||||+|.+.++|.+|+. |++..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999998765 368999999999999999998 9999999999999
Q ss_pred ccCCCC
Q 019691 250 LPSKTA 255 (337)
Q Consensus 250 ~~sk~~ 255 (337)
.+++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998644
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=3.8e-16 Score=120.17 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
...++|||+|||.++++++|+++|+.||.|..|++..+...++|||||+|.+.++|.+|++ |++..+.|++|+|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4678999999999999999999999999999999998655578999999999999999998 999999999999999764
Q ss_pred C
Q 019691 255 A 255 (337)
Q Consensus 255 ~ 255 (337)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=3.1e-16 Score=118.26 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=70.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
.+|||+|||+++++++|+++|+.||.|.+++++.++.+ ++|||||+|.+.++|.+|+. |+|..+.|++|+|.+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 58999999999999999999999999999999988654 58999999999999999998 99999999999999975
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=122.61 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||+++++++|+++|+.||.|..|+++.+...++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 44678999999999999999999999999999999998833368999999999999999998 99999999999999986
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=9.8e-17 Score=125.37 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCe----Eecccce
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ--VVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGT----MLGFYPV 247 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~--V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~----~l~g~~I 247 (337)
.-.||||+|||+++|+++|+++|++||. |.+|++++|+.+ ++|||||+|.+.++|.+|++ |++. .+.|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4569999999999999999999999995 678999998865 78999999999999999998 8885 5899999
Q ss_pred EEccCCC
Q 019691 248 RVLPSKT 254 (337)
Q Consensus 248 ~V~~sk~ 254 (337)
+|.+++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999863
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=3.4e-16 Score=119.65 Aligned_cols=78 Identities=33% Similarity=0.570 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
..++|||+|||+++++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|+.+++..+.|++|+|.+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 4589999999999999999999999999999999988644 68999999999999999999999999999999999864
No 56
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=126.01 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||.++++++|+++|+.||.|..|+++.++..++|||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999877789999999999999999998 99999999999999975
No 57
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=3.8e-17 Score=138.55 Aligned_cols=146 Identities=12% Similarity=0.188 Sum_probs=105.3
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGY-SQGKRRMN 165 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~-~~G~r~~~ 165 (337)
+..+|.++|++++++..+.++....+..+.+++-+.|.... ....+. ..+. -.| +.+.
T Consensus 16 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-----~a~~A~---------------~~~~~~~g-~~i~ 74 (167)
T 2cjk_A 16 TEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS-----SVDEVV---------------KTQHILDG-KVID 74 (167)
T ss_dssp CHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH-----HHHHHH---------------HSCCEETT-EECC
T ss_pred CHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH-----HHHHHH---------------hcccccCC-eEcc
Confidence 67899999999999999999988766665555433221110 000000 0000 011 1111
Q ss_pred CCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEec
Q 019691 166 CRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLG 243 (337)
Q Consensus 166 ~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~ 243 (337)
.............++|||+|||.++++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|+++++..+.
T Consensus 75 v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 75 PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp CEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred cccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 111112222335679999999999999999999999999999999988643 789999999999999999999999999
Q ss_pred ccceEEccCC
Q 019691 244 FYPVRVLPSK 253 (337)
Q Consensus 244 g~~I~V~~sk 253 (337)
|++|+|.++.
T Consensus 155 g~~i~V~~a~ 164 (167)
T 2cjk_A 155 DRKIEIKRAE 164 (167)
T ss_dssp SSCEEEEECC
T ss_pred CeEEEEeecC
Confidence 9999999974
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.4e-16 Score=122.71 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hC------CeEeccc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LA------GTMLGFY 245 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~------g~~l~g~ 245 (337)
....++|||+|||+++++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||. |+ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 446789999999999999999999999999999999988764 68999999999999999998 99 9999999
Q ss_pred ceEEccCCC
Q 019691 246 PVRVLPSKT 254 (337)
Q Consensus 246 ~I~V~~sk~ 254 (337)
+|+|.+++.
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999753
No 59
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.6e-16 Score=122.21 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecC-CC--CCceEEEEEEcCHHHHHHHHH-h-CCeEecccceE
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PN--SVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVR 248 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d-~~--~~kg~aFV~F~~~e~A~~Al~-l-~g~~l~g~~I~ 248 (337)
.+...++|||+|||..+++++|+++|..||.|..|+|+.+ +. .++|||||+|.+.++|.+|+. | ++..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999988 33 368999999999999999998 8 99999999999
Q ss_pred EccCCC
Q 019691 249 VLPSKT 254 (337)
Q Consensus 249 V~~sk~ 254 (337)
|.+++.
T Consensus 91 v~~a~~ 96 (107)
T 2cph_A 91 LEWADS 96 (107)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999854
No 60
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=123.82 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hC--CeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~--g~~l~g~~I~V~~ 251 (337)
+...++|||+|||+++++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|..|++ |+ +..+.|++|+|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 446789999999999999999999999999999999986 4899999999999999998 75 4789999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-16 Score=124.90 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||.++++++|+++|+.||.|..|.++.++.. ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345689999999999999999999999999999999998743 68999999999999999998 9999999999999998
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 644
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=122.90 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999988754 68999999999999999996 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 754
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=4.4e-16 Score=121.11 Aligned_cols=77 Identities=32% Similarity=0.464 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
+++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|+|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999988754 68999999999999999997 999999999999999753
No 64
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=3.1e-17 Score=146.02 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=111.3
Q ss_pred CceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCC
Q 019691 63 GGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTA 142 (337)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 142 (337)
.+.+-|--++..+ +-.+|.++|++++++..+.++.+..+..+.+++-+.|.... ....+.
T Consensus 15 ~~tlfVgnLp~~~-----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-----~A~~Ai---- 74 (213)
T 4f02_A 15 MASLYVGDLHPDV-----------TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA-----DAERAL---- 74 (213)
T ss_dssp CCEEEEESCCTTC-----------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-----HHHHHH----
T ss_pred CcEEEEeCCCCCC-----------CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH-----HHHHHH----
Confidence 3456664445444 67899999999999999999987766666554422221000 000000
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCC--CCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCce
Q 019691 143 NTNGHTTTRRKRNGY-SQGKRRMNCR--TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR 219 (337)
Q Consensus 143 ~~~g~~~~~r~~~~~-~~G~r~~~~r--~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg 219 (337)
....+. -.|+ .+... ...........++|||+|||+.+++++|+++|+.||.|..|+|+.+..+++|
T Consensus 75 ---------~~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g 144 (213)
T 4f02_A 75 ---------DTMNFDVIKGK-PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 144 (213)
T ss_dssp ---------HHHTTCEETTE-ECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEE
T ss_pred ---------HHhhhhhcCCc-ccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCce
Confidence 000000 0111 11000 0111112234578999999999999999999999999999999998877899
Q ss_pred EEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 220 FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 220 ~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
||||+|.+.++|.+||+ |+|..|.|++|+|.+++
T Consensus 145 ~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 145 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 99999999999999997 99999999999999874
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=122.56 Aligned_cols=79 Identities=30% Similarity=0.415 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..|.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46789999999999999999999999999999999988654 68999999999999999997 9999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 90 ~~ 91 (102)
T 2cqb_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=122.91 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |++..+.|++|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999988764 58999999999999999998 9999999999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 101 ~ 101 (106)
T 1p27_B 101 F 101 (106)
T ss_dssp E
T ss_pred c
Confidence 5
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-16 Score=123.24 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.+...++|||+|||.++++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||+ +++ .|.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3456789999999999999999999999999999999998754 68999999999999999998 887 8999999999
Q ss_pred cCCCC
Q 019691 251 PSKTA 255 (337)
Q Consensus 251 ~sk~~ 255 (337)
+++..
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98643
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=120.83 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v-~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
...++|||+|||.++++++|+++|+.||.|..+ +++.++.+ ++|||||+|.+.++|.+|+. |++..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 99988554 68999999999999999999 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 753
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=5.3e-16 Score=121.34 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=73.5
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeE
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTM 241 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~--------v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~ 241 (337)
..+...++|||+|||.++++++|+++|+.||.|.. ++++.++.+ ++|||||+|.+.++|.+|++ |+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 999988754 68999999999999999998 99999
Q ss_pred ecccceEEccC
Q 019691 242 LGFYPVRVLPS 252 (337)
Q Consensus 242 l~g~~I~V~~s 252 (337)
+.|++|+|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999986
No 70
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=2.3e-16 Score=139.21 Aligned_cols=157 Identities=14% Similarity=0.234 Sum_probs=103.5
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCC-----CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNG-----FGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGK 161 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~-----~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G~ 161 (337)
+..+|.++|++++++..+.++.......+.+++-+.|.... .-..++.... | +.-.-.+....
T Consensus 41 t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--------g----~~l~v~~~~~~ 108 (216)
T 2qfj_A 41 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG--------G----RNIKVGRPSNI 108 (216)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-------------CCCEEECCSCC
T ss_pred CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC--------C----eeEEEecCCCc
Confidence 77899999999999999999887755555544322221000 0000000000 0 00000000000
Q ss_pred CCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hC
Q 019691 162 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LA 238 (337)
Q Consensus 162 r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~ 238 (337)
.................++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 109 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp GGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 0000000000112345689999999999999999999999999999999998654 58999999999999999998 99
Q ss_pred CeEecccceEEccCCCC
Q 019691 239 GTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 239 g~~l~g~~I~V~~sk~~ 255 (337)
+..|+|++|+|.+++..
T Consensus 189 g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 189 LFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp TCBCSSSBCEEEECSSC
T ss_pred CCEeCCcEEEEEEecCC
Confidence 99999999999998654
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=9.5e-16 Score=123.61 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988654 68999999999999999998 99999999999999
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 863
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=123.52 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=74.4
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
+.+...++|||+|||..+++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999988764 68999999999999999997 9999999999999
Q ss_pred ccCC
Q 019691 250 LPSK 253 (337)
Q Consensus 250 ~~sk 253 (337)
.+++
T Consensus 101 ~~a~ 104 (108)
T 2jrs_A 101 GHVT 104 (108)
T ss_dssp ECSC
T ss_pred EEcc
Confidence 9975
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.6e-16 Score=120.97 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccc----e
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVV-DCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYP----V 247 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~-~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~----I 247 (337)
...++|||+|||+++++++|+++|+.||.|. .|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 9999998754 68999999999999999998 9999999999 9
Q ss_pred EEccCCC
Q 019691 248 RVLPSKT 254 (337)
Q Consensus 248 ~V~~sk~ 254 (337)
+|.+++.
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999753
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=6.8e-16 Score=122.03 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEe---cccce
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTML---GFYPV 247 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l---~g~~I 247 (337)
.+...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999998764 68999999999999999998 999887 88999
Q ss_pred EEccCCC
Q 019691 248 RVLPSKT 254 (337)
Q Consensus 248 ~V~~sk~ 254 (337)
+|.+++.
T Consensus 89 ~v~~a~~ 95 (106)
T 2dgp_A 89 QVKPADS 95 (106)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999754
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=5.6e-16 Score=127.68 Aligned_cols=80 Identities=29% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
+...++|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+||+ |++..|.|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999988764 68999999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 753
No 76
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=6.2e-16 Score=122.48 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||+.+++++|+++|..||.|..|+++.++.. ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999988844 58999999999999999998 9999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=1.1e-16 Score=135.78 Aligned_cols=148 Identities=20% Similarity=0.310 Sum_probs=103.9
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNC 166 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G~r~~~~ 166 (337)
+..+|.++|++++++....++....+..+.+++-+.|.... ....+ -..-.+..-+.+++..
T Consensus 16 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-----~A~~a-------------~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 16 TDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEM-----DSQRA-------------IKVLNGITVRNKRLKV 77 (168)
T ss_dssp CHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH-----HHHHH-------------HHHHTTCEETTEECEE
T ss_pred CHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHH-----HHHHH-------------HHhcCCCEeCCcEEEE
Confidence 67889999999999999999877665555544322220000 00000 0000011011122222
Q ss_pred CCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEec
Q 019691 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG 243 (337)
Q Consensus 167 r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~ 243 (337)
............++|||+|||..+++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|++ |+|..+.
T Consensus 78 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 78 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp EECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred EecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 22223333456789999999999999999999999999999999988743 58999999999999999998 9999997
Q ss_pred c--cceEEccC
Q 019691 244 F--YPVRVLPS 252 (337)
Q Consensus 244 g--~~I~V~~s 252 (337)
| ++|+|.++
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 7 99999874
No 78
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=121.60 Aligned_cols=80 Identities=26% Similarity=0.373 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||+++++++|+++|..||.|..|+++.++.+ ++|||||+|.+.++|.+||..++..|.|++|+|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 456789999999999999999999999999999999998654 689999999999999999988999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 93 ~~ 94 (105)
T 2dh8_A 93 TP 94 (105)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 79
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.1e-15 Score=120.48 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||.++++++|+++|..|| |..|+++.++.+ ++|||||+|.+.++|.+||.|++..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 999999998764 689999999999999999999999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 80
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=125.20 Aligned_cols=79 Identities=32% Similarity=0.439 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||.++++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||.|++..|.|+.|+|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 446689999999999999999999999999999999988864 689999999999999999999999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 81
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=7.5e-16 Score=129.63 Aligned_cols=122 Identities=10% Similarity=0.070 Sum_probs=94.5
Q ss_pred EEecCCCCCceEEEEEEcCHHHHHHHHH-h-CCeEecccceEEccCCCCCCCCC--CCCCCCCccccccccceeeEeCCC
Q 019691 209 RICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPSKTAIAPVN--PTFLPRSEDEREMCSRTIYCTNID 284 (337)
Q Consensus 209 ~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l-~g~~l~g~~I~V~~sk~~~~~~~--~~~~p~~~~~~~~~~~~l~V~NLp 284 (337)
.+..+...-+|+++|+|.+.++|++|++ + ++..+.| +|.+.++........ ...............++|||+|||
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4444544568999999999999999997 8 9999999 999988653211000 000011111223467999999999
Q ss_pred CCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 285 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 285 ~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.+++++|+++|++| |.|..|+++++ ++|||||+|.+.++|.+||+.
T Consensus 83 ~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 83 NNGNKTELERAFGYY-GPLRSVWVARN---PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp SCCSCHHHHHHHHHH-SCEEEEEECSS---SCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh-CCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHH
Confidence 999999999999998 99999999887 578999999999999999973
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=120.64 Aligned_cols=80 Identities=28% Similarity=0.344 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||.++++++|+++|..||.|..|+|+.++.. ++|||||+|.+.++|.+|++ |++..|.|++|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35689999999999999999999999999999999988764 58999999999999999998 99999999999999976
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=2e-16 Score=124.40 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecc-c
Q 019691 176 VIRRTVYVSDIDQ------QVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGF-Y 245 (337)
Q Consensus 176 ~~~rtVfV~nLp~------~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g-~ 245 (337)
...++|||+|||. ++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+|++ |+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568999999999 9999999999999999999999999874 68999999999999999997 99999999 9
Q ss_pred ceEEccCC
Q 019691 246 PVRVLPSK 253 (337)
Q Consensus 246 ~I~V~~sk 253 (337)
+|+|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999863
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=120.69 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeE-ecccceEEc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRVL 250 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~-~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~-l~g~~I~V~ 250 (337)
....++|||+|||+++++++|+++|.. ||.|..|+++.++.. ++|||||+|.+.++|.+|++ |++.. +.|++|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 446789999999999999999999999 999999999998743 68999999999999999998 99999 999999999
Q ss_pred cCCC
Q 019691 251 PSKT 254 (337)
Q Consensus 251 ~sk~ 254 (337)
+++.
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 9754
No 85
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-15 Score=117.96 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEcc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~ 251 (337)
.....++|||+|||.++++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||. ++..+.|++|+|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999998754 68999999999999999998 57899999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
+..
T Consensus 90 a~~ 92 (103)
T 2cqg_A 90 PNS 92 (103)
T ss_dssp CCT
T ss_pred cCC
Confidence 754
No 86
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=122.11 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEe
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTML 242 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~--------~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l 242 (337)
.....++|||+|||.++++++|+++|..||.|. .|+++.++.+ ++|||||+|.+.++|.+||+ |++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 6999988654 68999999999999999998 999999
Q ss_pred cccceEEccCCC
Q 019691 243 GFYPVRVLPSKT 254 (337)
Q Consensus 243 ~g~~I~V~~sk~ 254 (337)
.|++|+|.+++.
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999764
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=117.39 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS---VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~---~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
..++|||+|||.++++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999999888753 57999999999999999998 9999999999999987
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=5.1e-15 Score=120.51 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||..+++++|+++|+.||.|..|+++.++.. ++|||||+|.+.++|.+|+. |++..+.|++|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 446689999999999999999999999999999999998743 68999999999999999998 9999999999999998
Q ss_pred CCCC
Q 019691 253 KTAI 256 (337)
Q Consensus 253 k~~~ 256 (337)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 89
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.7e-16 Score=116.48 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|++|+++++..+.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999999988754 689999999999999999999999999999999874
No 90
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.8e-16 Score=123.20 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEecCCCC-----CceEEEEEEcCHHHHHHHHH-hCCeEecccc
Q 019691 176 VIRRTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALS-LAGTMLGFYP 246 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~---~~F~~~G~V~~v~i~~d~~~-----~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~ 246 (337)
...++|||+|||+++++++|+ ++|.+||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356799999999999999999 99999999999999988752 56999999999999999998 9999999999
Q ss_pred eEEccCCC
Q 019691 247 VRVLPSKT 254 (337)
Q Consensus 247 I~V~~sk~ 254 (337)
|+|.+++.
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99999753
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=9.8e-16 Score=122.02 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||..+++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |+|..+.|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999988654 68999999999999999998 999999999999999
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
++
T Consensus 103 a~ 104 (110)
T 1oo0_B 103 CF 104 (110)
T ss_dssp SE
T ss_pred cc
Confidence 75
No 92
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-15 Score=121.84 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=76.1
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
..+...++|||+|||.++++++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..|.|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567789999999999999999999999999999999988765 58999999999999999998 9999999999999
Q ss_pred ccCCCC
Q 019691 250 LPSKTA 255 (337)
Q Consensus 250 ~~sk~~ 255 (337)
.+++..
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998643
No 93
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=119.00 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999988654 68999999999999999998 9999999999998875
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=118.38 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-h--CCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L--AGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l--~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||.|..|.++++ +|||||+|.+.++|.+|++ | ++..+.|++|+|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 35689999999999999999999999999999999876 5899999999999999997 5 578899999999998
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
+..
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 643
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.1e-15 Score=117.02 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++ ||+..+.|++|+|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 56799999999999999999999999999999976 46999999999999999998 9999999999999974
No 96
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=120.05 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCe--EecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~--~l~g~~I~V~~ 251 (337)
..++++|||+|||.++|+++|+++|++||.|.+|++++. +|+|||+|.+.++|.+|++ |++. .+.|++|+|.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 346789999999999999999999999999999999864 4799999999999999997 8775 48899999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=119.25 Aligned_cols=78 Identities=26% Similarity=0.389 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS---VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~---~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|..|| |..|+|+.++.+ ++|||||+|.+.++|.+||.|++..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 999999988753 589999999999999999999999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=121.44 Aligned_cols=74 Identities=28% Similarity=0.310 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCC--eEecccceEEccC
Q 019691 177 IRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVLPS 252 (337)
Q Consensus 177 ~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g--~~l~g~~I~V~~s 252 (337)
+.++|||+|||+ ++++++|+++|+.||.|.+|+|++++ |||||+|.+.++|..|++ |++ ..|.|++|+|.++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 578999999999 99999999999999999999998764 799999999999999997 775 5699999999998
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=114.96 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-h-CCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l-~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||.++++++|+++|++||.|..|++.++ +|||||+|.+.++|.+|+. | ++..+.|++|+|.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 456789999999999999999999999999999999875 5899999999999999998 8 999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=116.00 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||.++++++|+++|+.| .|..|+++.+... ++|||||+|.+.++|.+||.|++..|.|++|+|.+++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4467899999999999999999999999 9999999998543 6899999999999999999999999999999999975
No 101
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=123.62 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V-~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||+++++++|+++|..||.| ..|+|+.++.. ++|||||+|.+.++|.+||++++..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4467899999999999999999999999999 88999988844 789999999999999999999999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=9.7e-16 Score=124.17 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~---V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++.. ++|||||+|.+.++|.+||++++..|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 446789999999999999999999999999 899999988765 6899999999999999999999999999999998
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 864
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=7e-16 Score=116.23 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEeccc-ceEE
Q 019691 178 RRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-PVRV 249 (337)
Q Consensus 178 ~rtVfV~nLp~~v------tee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~-~I~V 249 (337)
+++|||+|||..+ ++++|+++|++||.|.+|++.+....++|||||+|.+.++|.+|++ |+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 7899999999999999999885444478999999999999999998 999999999 8876
Q ss_pred c
Q 019691 250 L 250 (337)
Q Consensus 250 ~ 250 (337)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=114.63 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||.++++++|+++|+.||.|..|++. ++||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 3467899999999999999999999999999999997 4799999999999999997 99999999999999975
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 79 ~ 79 (90)
T 2dnq_A 79 N 79 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=129.16 Aligned_cols=77 Identities=26% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G--~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
..++|||+|||+++++++|+++|+.|| .|.+|+++.++.+ ++|||||+|.+.++|.+||+ |+|..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999998765 68999999999999999998 899999999999998
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2.3e-15 Score=120.17 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=70.2
Q ss_pred cCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 173 ~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
..+...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+...+..+.|+.|+|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34556789999999999999999999999999999999998754 6899999999999999999955799999999999
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
++.
T Consensus 100 ~a~ 102 (109)
T 2rs2_A 100 VAF 102 (109)
T ss_dssp ECC
T ss_pred Ecc
Confidence 974
No 107
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=118.83 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.+...++|||+|||..+++++|+++|+.||.|..|+++.+ +|||||+|.+.++|.+|+. |++..+.|++|+|.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 4556789999999999999999999999999999999887 4899999999999999997 9999999999999998
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=2e-15 Score=122.84 Aligned_cols=81 Identities=30% Similarity=0.528 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++|++..|.|+.|+|.++
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEES
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 345689999999999999999999999999999999988644 689999999999999999999999999999999998
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
+..
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=120.46 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEeccc-c
Q 019691 175 EVIRRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-P 246 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~v------tee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~-~ 246 (337)
....++|||+|||..+ ++++|+++|+.||.|..|++++....++|||||+|.+.++|.+|+. |+|..|.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4457899999999999 8899999999999999999985444478999999999999999998 999999998 9
Q ss_pred eEEccCC
Q 019691 247 VRVLPSK 253 (337)
Q Consensus 247 I~V~~sk 253 (337)
|+|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999874
No 110
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=119.18 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|..||.|..+.++.++.+ ++|||||+|.+.++|.+|++ |++..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35679999999999999999999999999988877776554 68999999999999999996 9999999999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.4e-15 Score=118.41 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEe--------c
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTML--------G 243 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l--------~ 243 (337)
.+...++|||+|||+++++++|+++|..||.|..|+++.++.. ++|||||+|.+.++|.+|++ |+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999999999999998743 58999999999999999998 999999 4
Q ss_pred ccceEEccCC
Q 019691 244 FYPVRVLPSK 253 (337)
Q Consensus 244 g~~I~V~~sk 253 (337)
+++|.|.+++
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6778888764
No 112
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=120.21 Aligned_cols=78 Identities=32% Similarity=0.451 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||..+++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999988654 58999999999999999997 9999999999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 5
No 113
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=3.7e-16 Score=131.93 Aligned_cols=148 Identities=15% Similarity=0.224 Sum_probs=101.9
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNC 166 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G~r~~~~ 166 (337)
+..+|.++|++.+++....++.......+.+++-+.|.... ....+ -..-.+..-+.+++..
T Consensus 15 ~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~-----~A~~a-------------~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 15 TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK-----DAEKA-------------INTLNGLRLQTKTIKV 76 (167)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHH-----HHHHH-------------HHHHTTCEETTEECEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHH-----HHHHH-------------HHHcCCCccCCceEEE
Confidence 67899999999999999998877655555544322220000 00000 0000011001122222
Q ss_pred CCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEec
Q 019691 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG 243 (337)
Q Consensus 167 r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~ 243 (337)
............++|||+|||..+++++|+++|+.||.|..+++..++.+ ++|||||+|.+.++|.+|++ |+|..+.
T Consensus 77 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 77 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp EECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred EecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 22222233445689999999999999999999999999999999988744 58999999999999999998 9999999
Q ss_pred ccc--eEEccC
Q 019691 244 FYP--VRVLPS 252 (337)
Q Consensus 244 g~~--I~V~~s 252 (337)
|+. |+|.++
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 777763
No 114
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=3.4e-15 Score=126.41 Aligned_cols=81 Identities=26% Similarity=0.264 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.....++|||+|||..+++++|+++|+.||.|..|+|+.++.+ ++|||||+|.+.++|.+||+ |++..|.+++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999998765 68999999999999999998 99999999999999
Q ss_pred cCCC
Q 019691 251 PSKT 254 (337)
Q Consensus 251 ~sk~ 254 (337)
+++.
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9864
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=121.87 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hC--CeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~--g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|++ ++ +..+.|++|+|.+++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 5689999999999999999999999999999999986 5899999999999999997 76 468999999999986
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 106 ~ 106 (119)
T 2ad9_A 106 H 106 (119)
T ss_dssp S
T ss_pred C
Confidence 4
No 116
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8e-16 Score=121.55 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
...++|||+|||+++|+++|+++|+.||. ..|+|+.++.. ++|||||+|.+.++|++||++++..|.++.|+|.++..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 45689999999999999999999999995 49999988754 68999999999999999999999999999999998753
No 117
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.4e-16 Score=125.71 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||+++++++|+++|..||.|..+.++.+..+ ++|||||+|.+.++|.+||.+++..|.|++|+|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 345689999999999999999999999999988544444333 689999999999999999999999999999999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=9e-16 Score=118.79 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||+++++++|+++|..||.|..++++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999988888876654 68999999999999999998 99999999999999863
No 119
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=119.01 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~-v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||+++++++|+++|..||.|.. |+|+.+... ++|||||+|.+.++|.+||..++..++++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45689999999999999999999999999987 888887443 6899999999999999999889999999999998864
No 120
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=123.31 Aligned_cols=77 Identities=30% Similarity=0.411 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||+.+++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999988654 68999999999999999997 9999999999999874
No 121
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=1.1e-15 Score=126.82 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
.....++|||+|||.++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |++..|.|++|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446789999999999999999999999999999999988654 68999999999999999998 99999999999999
Q ss_pred cCCCC
Q 019691 251 PSKTA 255 (337)
Q Consensus 251 ~sk~~ 255 (337)
+++..
T Consensus 123 ~a~~~ 127 (135)
T 2lea_A 123 MARYG 127 (135)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98643
No 122
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=119.90 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||.++++++|+++|..||.|..|+|+.++.+ ++|||||+|.+.++|.+||..++..|.|+.|+|.+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 35689999999999999999999999999999999998764 6899999999999999999889999999999999975
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 123
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-15 Score=115.47 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEec--ccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG--FYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~--g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||.|..|++..+ +|||||+|.+.++|.+|++ |++..+. |++|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 35689999999999999999999999999999999765 5899999999999999998 9999999 999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 91 ~~ 92 (97)
T 1why_A 91 KS 92 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.1e-16 Score=130.43 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||..+++++|+++|+.||.|..+.++.++.+ ++|||||+|.+.++|.+|+. |+|..+.|++|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 446779999999999999999999999999999999988654 68999999999999999998 999999999999999
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 125
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.6e-15 Score=122.46 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||+.+++++|+++|..||.|..|.|+.++.+ ++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999999999988654 58999999999999999997 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 99 a~~ 101 (126)
T 3ex7_B 99 CFV 101 (126)
T ss_dssp SEE
T ss_pred ecC
Confidence 754
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=115.99 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||.++++++|+++|..||.|. +.++.+ .++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34568999999999999999999999999996 666654 357999999999999999997 99999999999999975
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=7.8e-16 Score=133.79 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=109.1
Q ss_pred CCceeEeecCccchhhccCCccchhhHHHHHHHHhccCccceeecCCCCCCCCccCCCCCccCCCCC---Cc-CCCcccC
Q 019691 62 GGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGF---GY-TNNFIMH 137 (337)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~a~~~vp~~~~~~~~~~~~p~~~~~~~~---g~-~~~~~~~ 137 (337)
..+.+.|.-++... +..+|.++|++++++..+.++....+..+.+++-+.|....- +. .++...
T Consensus 12 ~~~~l~V~nLp~~~-----------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~- 79 (196)
T 1l3k_A 12 QLRKLFIGGLSFET-----------TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79 (196)
T ss_dssp GGGEEEEESCCTTC-----------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE-
T ss_pred CCCEEEEeCCCCCC-----------CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE-
Confidence 44566665555444 778999999999999999998877655555554332211000 00 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-
Q 019691 138 TDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS- 216 (337)
Q Consensus 138 ~~~~~~~~g~~~~~r~~~~~~~G~r~~~~r~~~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~- 216 (337)
.| +.-.-.+...+ ............++|||+|||.++++++|+++|+.||.|..|+++.++.+
T Consensus 80 -------~g----~~l~v~~~~~~-----~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g 143 (196)
T 1l3k_A 80 -------DG----RVVEPKRAVSR-----EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143 (196)
T ss_dssp -------TT----EECEEEECCC----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC
T ss_pred -------CC----EEeeeecccCc-----ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC
Confidence 00 00000000000 00000112335589999999999999999999999999999999998754
Q ss_pred -CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 217 -VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 217 -~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
++|||||+|.+.++|.+|+..++..|.|+.|.|.++.
T Consensus 144 ~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 6899999999999999999988999999999999974
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=116.71 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||+.+++++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 346789999999999999999999999999999999865 4799999999999999997 99999999999999975
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-14 Score=115.19 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecc-----cceEEc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF-----YPVRVL 250 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g-----~~I~V~ 250 (337)
..++|||+|||+++++++|+++|..||.|..|+|+.+ |||||+|.+.++|.+||+ |++..|.| ++|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 4689999999999999999999999999999999887 799999999999999998 99999999 999999
Q ss_pred cCCC
Q 019691 251 PSKT 254 (337)
Q Consensus 251 ~sk~ 254 (337)
+++.
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9754
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.1e-15 Score=117.28 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||.++++++|+++|+.||.|.++++.. ++|||||+|.+.++|.+|+. |++..+.|+.|+|.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34568999999999999999999999999999999984 35899999999999999997 99999999999999975
No 131
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=5.2e-15 Score=125.26 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||+++++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+||. |+|..+.|++|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999998654 78999999999999999997 999999999999999
Q ss_pred CCCC
Q 019691 252 SKTA 255 (337)
Q Consensus 252 sk~~ 255 (337)
++..
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8643
No 132
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=5.6e-15 Score=125.71 Aligned_cols=150 Identities=18% Similarity=0.263 Sum_probs=100.0
Q ss_pred hHHHHHHHHhccCccceeecCCCCCCC--CccCCCCCccCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 019691 87 EMRDLVDMLSKLNPMAAEFVPPSLANG--QIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQG-KRR 163 (337)
Q Consensus 87 ~~~~l~~~~~~~~p~a~~~vp~~~~~~--~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~G-~r~ 163 (337)
+..+|.++|++++++..+.++...... .+.+++-+.|.... ....+.. .-+|.. ...+ .+.
T Consensus 16 te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~-----~A~~A~~---~l~~~~--------~~~~~~~~ 79 (175)
T 3nmr_A 16 SEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK-----AALEAQN---ALHNMK--------VLPGMHHP 79 (175)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHH-----HHHHHHH---HHTTTC--------CCTTCSSC
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHH-----HHHHHHH---HhcCcE--------EccCCccc
Confidence 778999999999999999988776554 34444322221000 0000000 000000 0000 011
Q ss_pred CCCCCC-ccccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCe
Q 019691 164 MNCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGT 240 (337)
Q Consensus 164 ~~~r~~-~~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~ 240 (337)
+..... .........++|||+|||..+++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|++ |+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 80 IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp CEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred eEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 111111 11122336689999999999999999999999999999999988765 58999999999999999997 9998
Q ss_pred Eec---ccceEEccC
Q 019691 241 MLG---FYPVRVLPS 252 (337)
Q Consensus 241 ~l~---g~~I~V~~s 252 (337)
.+. +++|+|.++
T Consensus 160 ~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFA 174 (175)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred cccCCCCCCeEEEec
Confidence 766 499999885
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.6e-15 Score=126.28 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~---V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++.. ++|||||+|.+.++|++||++++..|.|++|+|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 346689999999999999999999999999 889999988765 6899999999999999999999999999999999
Q ss_pred cC
Q 019691 251 PS 252 (337)
Q Consensus 251 ~s 252 (337)
++
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 134
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.5e-15 Score=112.57 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||.++++++|+++|+.||.|..|++.+ +||||+|.+.++|.+|+. |++..+.|++|+|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45678999999999999999999999999999999974 499999999999999997 99999999999999985
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 81 ~ 81 (92)
T 2dgt_A 81 S 81 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6e-15 Score=117.10 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCC--eEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g--~~l~g~~I~V~~s 252 (337)
.+.++|||+|||.++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++ |++ ..+.|++|+|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35689999999999999999999999999999999875 5899999999999999997 764 4699999999998
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
+..
T Consensus 89 ~~~ 91 (104)
T 1wex_A 89 TSK 91 (104)
T ss_dssp SSS
T ss_pred cCc
Confidence 643
No 136
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=120.09 Aligned_cols=79 Identities=27% Similarity=0.397 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~-~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
.....++|||+|||.++++++|+++|+.|| |.+|+|+.++ .+ ++|||||+|.+.++|.+|+.|++..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345678999999999999999999999999 9999999886 22 6899999999999999999999999999999999
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
+++
T Consensus 94 ~a~ 96 (100)
T 2j76_E 94 VAD 96 (100)
T ss_dssp ECC
T ss_pred ecc
Confidence 874
No 137
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=113.30 Aligned_cols=75 Identities=25% Similarity=0.446 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
+...++|||+|||.++++++|+++|+.||.|..|++++ +||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45678999999999999999999999999999999974 499999999999999998 99999999999999975
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=2.3e-15 Score=120.93 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G-~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....+|||+|||+++++++|+++|+.|| .|..+++..+ .++|||||+|.+.++|++|++ |+|..+.|++|+|.+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3567999999999999999999999999 8999988643 267999999999999999997 99999999999999975
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=120.22 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
..++|||+|||+++++++|+++|+.| .|..|+|+.++.+ ++|||||+|.+.++|.+||.+++..|+|+.|.|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 34799999999999999999999999 8999999988765 789999999999999999999999999999999875
No 140
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=5.7e-16 Score=118.84 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
++|||+|||.++++++|+++|+.||.|.+|++..++.+ ++|||||+|.+.+ |.+|+. |++..+.|++|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999988754 6899999999999 999998 9999999999999997543
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1e-15 Score=113.67 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
++|||+|||+++++++|+++|++||.|..++++.++.+ ++|||||+|.+.++|.+|++ ++ ..+.|++|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998754 68999999999999999998 77 9999999999875
No 142
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.7e-15 Score=116.85 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-cCCCC--CceEEEEEEcCHHHHHHHHH-hC--CeEecccceE
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRIC-GDPNS--VLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVR 248 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~-V~~v~i~-~d~~~--~kg~aFV~F~~~e~A~~Al~-l~--g~~l~g~~I~ 248 (337)
...++|||+|||.++++++|+++|..||. |..|.++ .++.+ ++|||||+|.+.++|.+|+. |+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 66653 68999999999999999998 86 5899999999
Q ss_pred EccCCCC
Q 019691 249 VLPSKTA 255 (337)
Q Consensus 249 V~~sk~~ 255 (337)
|.+++..
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998643
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.5e-15 Score=115.04 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+...++|||+|||.++++++|+++|..||.| +++.+... ++|||||+|.+.++|.+|+. |++..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999987 55555333 68999999999999999998 9999999999999998
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
+..
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=5.6e-15 Score=117.82 Aligned_cols=75 Identities=29% Similarity=0.462 Sum_probs=69.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.+...++|||+|||.++++++|+++|+.||.|..|++. +|||||+|.+.++|.+|+. |+|..+.|++|+|.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35577899999999999999999999999999999998 4899999999999999998 9999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 101 ~~ 102 (108)
T 2jvo_A 101 KL 102 (108)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 145
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7.5e-16 Score=113.97 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
+|||+|||+++++++|+++|+.||.|..|.++.++.+ ++|||||+|.+.++|.+|+++++..+.|++|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999988764 689999999999999999999999999999998763
No 146
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=9.5e-15 Score=114.12 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=68.7
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 174 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
.....++|||+|||. ++++++|+++|+.||.|..|++. +|||||+|.+.++|.+|+. |+|..+.|++|+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345678999999998 99999999999999999999983 5899999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 147
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=124.23 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCe----Eeccc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--CRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGT----MLGFY 245 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~--v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~----~l~g~ 245 (337)
....++|||+|||+++|+++|+++|..||.|.. |+|++++.+ ++|||||+|.+. +|.+|+. |++. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 999999854 689999999999 9999998 9999 99999
Q ss_pred ceEEccCCC
Q 019691 246 PVRVLPSKT 254 (337)
Q Consensus 246 ~I~V~~sk~ 254 (337)
+|+|.+++.
T Consensus 99 ~l~V~~a~~ 107 (131)
T 2m2b_A 99 TINVEFAKG 107 (131)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999999754
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=120.98 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~---V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
....++|||+|||+++|+++|+++|..||. |..|+|+.++.+ ++|||||+|.+.++|.+||.+++..++|+.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 456789999999999999999999999988 899999988765 7899999999999999999999999999999998
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=112.07 Aligned_cols=74 Identities=34% Similarity=0.419 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
..++|||+|||.++++++|+++|..||.|..| +.++.+.+ ||||+|.+.++|.+|+.|++..|.|++|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 44544444 9999999999999999999999999999999864
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=119.17 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~ 255 (337)
..++|||+|||+++++++|+++|+.||.|..|.|.. ++|||||+|.+.++|.+|+. |+|..+.|++|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 457999999999999999999999999999998875 35899999999999999998 9999999999999998654
No 151
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-14 Score=111.27 Aligned_cols=74 Identities=27% Similarity=0.396 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTC--GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~--G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||+.+++++|+++|+.| |.|..|++. +|||||+|.+.++|.+|+. |++..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999 999998875 4799999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 86 a~~ 88 (99)
T 2cpd_A 86 AKP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 152
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.4e-14 Score=114.06 Aligned_cols=74 Identities=23% Similarity=0.409 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
...++|||+|||+++++++|+++|..||.|..|++++ +||||+|.+.++|.+|++ |++..|.|++|+|.+++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3568999999999999999999999999999999873 599999999999999998 999999999999999864
Q ss_pred C
Q 019691 255 A 255 (337)
Q Consensus 255 ~ 255 (337)
.
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=1.2e-14 Score=122.30 Aligned_cols=76 Identities=29% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|+. |+|..+.|++|+|.+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 446789999999999999999999999999999999887 46999999999999999998 99999999999999975
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=124.86 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.. ++|||||+|.+.++|.+|++ |++..|.|++|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345679999999999999999999999999999999988743 68999999999999999998 9999999999999997
Q ss_pred CCC
Q 019691 253 KTA 255 (337)
Q Consensus 253 k~~ 255 (337)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 543
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.4e-14 Score=115.38 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~-vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||++ +++++|+++|..||.|..|++ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34589999999999 999999999999999999998 35899999999999999996 99999999999999975
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=119.89 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 176 VIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~----~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
...++|||+|||+.+++++|+ ++|++||.|.+|.+..+ ..++|||||+|.+.++|..|+. |+|..|.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 356899999999999999876 69999999999988643 2368999999999999999997 99999999999999
Q ss_pred cCCC
Q 019691 251 PSKT 254 (337)
Q Consensus 251 ~sk~ 254 (337)
+++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9753
No 157
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.6e-15 Score=114.18 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~-~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
....++|||+|||. .+++++|+++|+.||.|..|++. +|||||+|.+.++|.+|+. |++..+.|++|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34678999999998 99999999999999999999984 5899999999999999998 9999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 81 ~~ 82 (96)
T 2kvi_A 81 SS 82 (96)
T ss_dssp EC
T ss_pred Cc
Confidence 54
No 158
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=116.79 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hC--CeEecccceEEc
Q 019691 175 EVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVL 250 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~-vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~--g~~l~g~~I~V~ 250 (337)
....++|||+|||++ +++++|+++|+.||.|.+|+|++. +|||||+|.+.++|..|++ |+ +..|.|++|+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999998 999999999999999999999754 5899999999999999997 75 567999999999
Q ss_pred cCCC
Q 019691 251 PSKT 254 (337)
Q Consensus 251 ~sk~ 254 (337)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9753
No 159
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=114.61 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V----~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
....++|||+|||.++++++|+++|..||.| ..+++. ...++|||||+|.+.++|.+|+. |++..+.|++|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999998 555555 23368999999999999999998 9999999999999
Q ss_pred ccCCCC
Q 019691 250 LPSKTA 255 (337)
Q Consensus 250 ~~sk~~ 255 (337)
.+++..
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998643
No 160
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=1.6e-14 Score=123.61 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||+.+++++|+++|..||.|..|.|+.++.+ ++|||||+|.+.++|.+||. |++..|.|++|+|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999988655 58999999999999999998 9999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 161
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=5.3e-15 Score=114.85 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~----~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
....++|||+|||.++++++|+ ++|+.||.|..|++... ..++|||||+|.+.++|.+|+. |+|..+.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467899999999999999999 99999999999988742 1256899999999999999998 9999999999999
Q ss_pred ccCCC
Q 019691 250 LPSKT 254 (337)
Q Consensus 250 ~~sk~ 254 (337)
.+++.
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99753
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=7.6e-15 Score=120.51 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--DCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~--~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||+++|+++|+++|+.| .|. .|+|+.++.+ ++|||||+|.+.++|.+||++++..|+|+.|+|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 456899999999999999999999999 676 8999988765 789999999999999999998889999999999875
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=111.22 Aligned_cols=76 Identities=24% Similarity=0.370 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-ICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~-i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||+++++++|+++|..||.|..|+ ++.++.+ +.|||+|.+.++|.+|+. |++..+.|++|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3568999999999999999999999999999994 7777653 449999999999999998 99999999999999975
No 164
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=112.78 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||..+++++|+++|..||.|..+ .....++|||||+|.+.++|.+|+. |++..+.|++|+|.+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3467899999999999999999999999988766 2223368999999999999999998 99999999999999975
No 165
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=111.46 Aligned_cols=77 Identities=27% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||.++++++|+++|+.|+ .|+++.++.+ ++|||||+|.+.++|.+||+ |++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999774 5677777644 68999999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 854
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=3.5e-15 Score=116.94 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~--~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||.++++++|+++|..||.|.. .++.+.. .++|||||+|.+.++|.+||+|++..+.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999999877 4555443 26899999999999999999999999999999999975
No 167
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=2.4e-15 Score=125.56 Aligned_cols=79 Identities=23% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||+++|+++|+++|+.|| |..|+|+.++.. ++|||||+|.+.++|.+||.+++..|.++.|+|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34568999999999999999999999999 779999988765 7899999999999999999999999999999998864
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 168
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.1e-14 Score=131.43 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G--~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+ ++|||||+|.+.++|.+||+ |++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999999755 68999999999999999998 999999999999998
Q ss_pred CC
Q 019691 252 SK 253 (337)
Q Consensus 252 sk 253 (337)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.5e-15 Score=119.75 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V----~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
....+|||+|||+++|+++|+++|+.||.| ..|+|+.++.. ++|||||+|.+.++|.+||+.++..|+++.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456899999999999999999999999975 68999888654 6899999999999999999989999999999988
Q ss_pred cC
Q 019691 251 PS 252 (337)
Q Consensus 251 ~s 252 (337)
.+
T Consensus 101 ~a 102 (123)
T 2dha_A 101 RS 102 (123)
T ss_dssp EE
T ss_pred EC
Confidence 75
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.8e-14 Score=110.29 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
..++|||+|||+++++++|+++|++| .|..+++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46799999999999999999999999 99999885 457899999999999999998 999999999999999754
No 171
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.52 E-value=6.3e-15 Score=115.69 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk 253 (337)
...++|||+|||.++++++|+++|+.||.|..|+++.++.. ++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 35689999999999999999999999999999999998743 68999999999999999999 9999999999998863
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.4e-14 Score=108.79 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEeccc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~----G-------~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~ 245 (337)
..++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+.|++..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 56899999999999999999999999 8 9999999866 5899999999999999999999999999
Q ss_pred ceEEcc
Q 019691 246 PVRVLP 251 (337)
Q Consensus 246 ~I~V~~ 251 (337)
+|+|.+
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999975
No 173
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=122.64 Aligned_cols=80 Identities=24% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEec
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG 243 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~--------v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~ 243 (337)
....++|||+|||.++++++|+++|+.||.|.. |+++.++.+ ++|||||+|.+.++|.+|+. |++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 888888654 68999999999999999998 9999999
Q ss_pred ccceEEccCCC
Q 019691 244 FYPVRVLPSKT 254 (337)
Q Consensus 244 g~~I~V~~sk~ 254 (337)
|++|+|.+++.
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999753
No 174
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-13 Score=106.09 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|| ++++++|+++|..||.|..|++. .++|||||+|.+.++|.+|+. |++..+.|++|+|.+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 345689999996 89999999999999999999985 345899999999999999997 99999999999999975
Q ss_pred C
Q 019691 254 T 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 175
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=109.28 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCC-eEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG-TMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~-V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g-~~l~g~~I~V~~s 252 (337)
...++|||+|||.++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++ |++ ..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45689999999999999999999999999 6666553 35899999999999999998 999 9999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 81 ~~ 82 (93)
T 2cqh_A 81 VS 82 (93)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=4.8e-14 Score=119.87 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||..+++++|+++|+.||.|..+++..++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 345789999999999999999999999999999999998643 68999999999999999998 999999999999998
Q ss_pred C
Q 019691 252 S 252 (337)
Q Consensus 252 s 252 (337)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 5
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=4.9e-14 Score=108.40 Aligned_cols=73 Identities=29% Similarity=0.412 Sum_probs=61.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeE--ecccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTM--LGFYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~--l~g~~I~V~~s 252 (337)
+....+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 456789999999999999999999999999999999875 57999999999999984 44444 56899999986
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=1.5e-13 Score=113.19 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEEcCHHHHHHHHH-hCCeEecc--cceEEccCC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSK 253 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~-aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~sk 253 (337)
-..|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|.+|++ |+|..|.+ ++|+|.+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3468899999999999999999999999999987653 477 9999999999999998 99999988 899999987
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 179
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=1.2e-13 Score=117.94 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecc--cceEEccCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSK 253 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~sk 253 (337)
.-.+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|.+|++ |+|..|.+ ++|+|.+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34579999999999999999999999999999987543 46899999999999999998 99999965 999999987
Q ss_pred CC
Q 019691 254 TA 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 180
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=7e-14 Score=112.56 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccc-----eEEc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYP-----VRVL 250 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~-----I~V~ 250 (337)
...+|||+|||+++++++|+++|..||.|..|.|+.+ |||||+|.+.++|.+||+ |++..|.|++ |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4578999999999999999999999999999999876 799999999999999998 9999999998 6666
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
.+.
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 181
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=117.74 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE--------EEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEeccc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC--------RICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v--------~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~ 245 (337)
....++|||+|||+++|+++|+++|+.||.|..+ ++.. ...++|||||+|.+.++|.+|+. |+|..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3456899999999999999999999999998763 3322 23378999999999999999998 999999999
Q ss_pred ceEEccCCC
Q 019691 246 PVRVLPSKT 254 (337)
Q Consensus 246 ~I~V~~sk~ 254 (337)
+|+|.+++.
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999864
No 182
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.7e-14 Score=112.71 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=67.3
Q ss_pred CCCCCEEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEe-----cccc
Q 019691 175 EVIRRTVYV--SDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-----GFYP 246 (337)
Q Consensus 175 ~~~~rtVfV--~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l-----~g~~ 246 (337)
..+.++||| +||+.++++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|++ |||..+ .+++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 345789999 779999999999999999999999988653 5899999999999999998 999988 6899
Q ss_pred eEEccCC
Q 019691 247 VRVLPSK 253 (337)
Q Consensus 247 I~V~~sk 253 (337)
|.|.+++
T Consensus 98 l~v~~a~ 104 (114)
T 2cq2_A 98 LYLNFVE 104 (114)
T ss_dssp CEEEEES
T ss_pred EEEEecc
Confidence 9999864
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=1.1e-12 Score=114.44 Aligned_cols=76 Identities=30% Similarity=0.321 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEec-ccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G-~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~-g~~I~V~~s 252 (337)
...++|||+|||..+++++|+++|+.|| .|..++++.+. +|+|||+|.+.++|.+|+. |+|..+. |++|+|.++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3578999999999999999999999999 99999997653 5899999999999999998 9999999 999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 195 ~~ 196 (198)
T 1qm9_A 195 KS 196 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=6.4e-13 Score=108.65 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEEcCHHHHHHHHH-hCCeEecc--cceEEccCCCC
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTA 255 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~-aFV~F~~~e~A~~Al~-l~g~~l~g--~~I~V~~sk~~ 255 (337)
.|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|..|++ |+|..|.| ++|+|.+++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4789999999999999999999999999999753 286 9999999999999998 99999987 68999998654
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.2e-14 Score=107.04 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
..++|||+|||.++++++|+++|+.||.|..|+++.+ ++|||||+|.+.++|++|+.. ...+.+++|+|.+++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 5689999999999999999999999999999999876 569999999999999865433 3556889999998753
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.8e-13 Score=120.28 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHHhCCeEecccceEEccCCC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~~sk~ 254 (337)
...++|||+|||+++++++|+++|+.||.|..|+|+++... ++|||||+|.+.++|.+|+...+..+.|++|+|.+++.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35689999999999999999999999999999999988765 68999999999999999999656799999999998654
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=2e-12 Score=116.04 Aligned_cols=76 Identities=30% Similarity=0.321 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEec-ccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G-~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~-g~~I~V~~s 252 (337)
...++|||+|||..+++++|+++|+.|| .|..|+++.+. +|||||+|.+.++|.+|+. |+|..+. |++|+|.++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 4578999999999999999999999999 99999996543 5899999999999999998 9999999 999999998
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=2.2e-13 Score=110.91 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.+...++|||+|| ++++++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|+. |++..+.|++|+|.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 3456789999996 69999999999999999999986 346899999999999999997 9999999999999997
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 109 ~~ 110 (121)
T 2bz2_A 109 RK 110 (121)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 189
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=3.7e-13 Score=116.97 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEcc
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~ 251 (337)
....++|||+|||..+++++|+++|+.||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999998644 58999999999999999998 999999999999999
Q ss_pred CCC
Q 019691 252 SKT 254 (337)
Q Consensus 252 sk~ 254 (337)
++.
T Consensus 191 a~~ 193 (198)
T 2yh0_A 191 ASV 193 (198)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 190
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.8e-13 Score=104.68 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=62.1
Q ss_pred CCE-EEEcCCCCCCcHHH----HHHHhhcC-CCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 178 RRT-VYVSDIDQQVTEEQ----LATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 178 ~rt-VfV~nLp~~vtee~----L~~~F~~~-G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
..| |||+|||..+++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|++ |+|..+.||+|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 445 99999999999987 55899999 5999881 2899999999999999998 99999999999999
Q ss_pred cCCCC
Q 019691 251 PSKTA 255 (337)
Q Consensus 251 ~sk~~ 255 (337)
+++..
T Consensus 80 ~A~~~ 84 (96)
T 2diu_A 80 FTPKN 84 (96)
T ss_dssp SSCCS
T ss_pred ecCCC
Confidence 98643
No 191
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=3.2e-13 Score=132.88 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
...++|||+|||+.+|+++|.++|..||.|..|.|+.++.+ ++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999988654 68999999999999999997 9999999999999998
Q ss_pred CC
Q 019691 253 KT 254 (337)
Q Consensus 253 k~ 254 (337)
+.
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=107.80 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEEcCHHHHHHHHH-hCCeEecccceEE
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~-----~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V 249 (337)
...++|||+|||+++++++|+++|++||.|. +.++.++. .++|||||+|.+.++|++||+ |+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 87877664 358999999999999999997 62 355555555
Q ss_pred cc
Q 019691 250 LP 251 (337)
Q Consensus 250 ~~ 251 (337)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 193
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.42 E-value=2.8e-13 Score=108.93 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=56.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||+.+|+++|+++|++| |.|.+|+|+++.+.++|||||+|.+.++|.+||+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999997 99999999999888899999999999999999964
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=1.9e-13 Score=121.15 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCe--eEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEeccc----ceE
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQV--VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY----PVR 248 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V--~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~----~I~ 248 (337)
.+.++|||+|||+++|+++|+++|+.||.| .+++++.+....+|+|||+|.+.++|.+||. |||..+.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 456899999999999999999999999999 8999988875567999999999999999998 999999886 565
Q ss_pred Ecc
Q 019691 249 VLP 251 (337)
Q Consensus 249 V~~ 251 (337)
|.+
T Consensus 201 vk~ 203 (205)
T 3tyt_A 201 LKL 203 (205)
T ss_dssp CEE
T ss_pred EEe
Confidence 554
No 195
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.42 E-value=4.3e-13 Score=105.17 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=56.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+|+++|+++|++| |.|..|++++|. +.++|||||+|.+.++|.+|++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 45789999999999999999999997 999999999874 67899999999999999999974
No 196
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=105.92 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=55.5
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+++|||+|||+.+|+++|+++|++| | .|..|+|++|. +.++|||||+|.+.++|.+||+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~-G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH-GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH-TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh-CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 3789999999999999999999998 8 89999999874 67899999999999999999974
No 197
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=1.3e-12 Score=103.75 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEEcCHHHHHHHHH-hCCeEecccc
Q 019691 176 VIRRTVYVSDIDQ-----QVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 246 (337)
Q Consensus 176 ~~~rtVfV~nLp~-----~vtee~L~~~F~~~G~V~~v~i~~d~~---~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~ 246 (337)
..+++|+|.||.. +-++++|+++|++||.|.+|+|+.++. .++|+|||+|.+.++|.+|+. |+|..+.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 237899999999999999999998864 368999999999999999998 9999999999
Q ss_pred eEEccCC
Q 019691 247 VRVLPSK 253 (337)
Q Consensus 247 I~V~~sk 253 (337)
|+|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999864
No 198
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=4.6e-12 Score=116.60 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEec-ccceEEccC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPS 252 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~-g~~I~V~~s 252 (337)
....++|||+|||..+++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|+. |+|..+. |++|+|.|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 4467899999999999999999999999999999998765 4899999999999999998 9999999 999999997
Q ss_pred C
Q 019691 253 K 253 (337)
Q Consensus 253 k 253 (337)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.4e-13 Score=108.91 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=66.5
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcC----HHH----HHHHHH---hCCeE
Q 019691 179 RTVYVSDI----DQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTD----EEG----ARAALS---LAGTM 241 (337)
Q Consensus 179 rtVfV~nL----p~~vtee~L~~~F~~~G~V~~v~i~~d~~~--~kg~aFV~F~~----~e~----A~~Al~---l~g~~ 241 (337)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+ ++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999987 69999999996 333 777865 69999
Q ss_pred ecccceEEccCC
Q 019691 242 LGFYPVRVLPSK 253 (337)
Q Consensus 242 l~g~~I~V~~sk 253 (337)
+.|++|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999743
No 200
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.6e-12 Score=102.79 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=56.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+|+++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+||++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~-G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK-GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS-SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc-CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHc
Confidence 56999999999999999999999997 999999999875 67899999999999999999973
No 201
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=103.90 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=56.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++|||+|||+.+++++|+++|++| |.|..|.|+.|. ++++|||||+|.+.++|.+||+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 999999999884 67899999999999999999974
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=1.3e-12 Score=111.50 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCC
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk 253 (337)
....++|||+|||..+++++|+++|+.||.|..+ .....++|||||+|.+.++|.+|+. |+|..+.|++|+|.+++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 3456899999999999999999999999988766 3333478999999999999999998 99999999999999974
No 203
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.36 E-value=2e-12 Score=98.18 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=57.2
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||+.+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+||++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 356899999999999999999999997 999999999874 67899999999999999999975
No 204
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=103.14 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=53.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+|+++|+++|++| |.|.+|.|+++ +|||||+|++.++|.+|++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999998 99999999986 56999999999999999983
No 205
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.36 E-value=5e-13 Score=110.71 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=58.2
Q ss_pred eEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHh
Q 019691 219 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (337)
Q Consensus 219 g~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 297 (337)
-++|++|.+...+..|+. +++....++.- +.+.. | .......++|||+|||..+++++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------P---PPDVEGMTSLKVDNLTYRTSPDTLRRVFE 69 (135)
T ss_dssp -------------------------------CCSCC-----------S---CSSGGGCCCEEEECCCSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------C---CCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 367888889999999997 87765555431 11110 1 11123568999999999999999999999
Q ss_pred hcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 298 SVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 298 ~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 70 ~~-G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 70 KY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp GG-SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred hc-CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 97 999999999873 67899999999999999999973
No 206
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.1e-12 Score=101.60 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=66.5
Q ss_pred CCCCCEEEEcCCCCCCc-----------HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEe
Q 019691 175 EVIRRTVYVSDIDQQVT-----------EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML 242 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vt-----------ee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l 242 (337)
+..+++|+|.||..... +++|+++|++||.|..|.| .++. ++|||||+|.+.++|.+|+. |+|..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44689999999954432 6899999999999999966 4443 78999999999999999997 999999
Q ss_pred cccceEEccCC
Q 019691 243 GFYPVRVLPSK 253 (337)
Q Consensus 243 ~g~~I~V~~sk 253 (337)
.|++|+|.++.
T Consensus 90 ~gr~l~v~~a~ 100 (112)
T 2dit_A 90 GGRQITAQAWD 100 (112)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEeC
Confidence 99999999964
No 207
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.35 E-value=1.3e-12 Score=118.49 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEe--
Q 019691 175 EVIRRTVYVSDIDQQV---------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-- 242 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~v---------tee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l-- 242 (337)
....++|||+|||..+ ++++|+++|++||.|.+|+|+.. +|||||+|.+.++|+.|++ |++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4467899999999998 79999999999999999999865 5899999999999999998 999999
Q ss_pred ----------cccceEEccCCC
Q 019691 243 ----------GFYPVRVLPSKT 254 (337)
Q Consensus 243 ----------~g~~I~V~~sk~ 254 (337)
.|+.|.|.|++.
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-
T ss_pred cccccccccCCCCEEEEEEccC
Confidence 899999999864
No 208
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.35 E-value=6.6e-13 Score=103.49 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=55.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCc--eEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~--I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.-.+|||+|||+.+|+++|+++|++| |. |..|++++|+ +.++|||||+|.+.++|.+||+.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~-G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPY-ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTT-CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhh-CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 45899999999999999999999997 94 6789999885 67899999999999999999974
No 209
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.35 E-value=3e-12 Score=100.68 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF-GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 457999999999999999999999997 999999999884 67899999999999999999973
No 210
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.2e-12 Score=99.58 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=57.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+...++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 456999999999999999999999997 99999999998777899999999999999999973
No 211
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.4e-12 Score=99.44 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=57.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+...++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA 74 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHH
Confidence 356999999999999999999999998 99999999999777899999999999999999973
No 212
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.34 E-value=2.6e-12 Score=109.76 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=57.0
Q ss_pred EEEcCHHHHHHHHH-hCCeEec--ccceEEccCCCCCCCCCCCCCCC---------CccccccccceeeEeCCCCCCCHH
Q 019691 223 VEFTDEEGARAALS-LAGTMLG--FYPVRVLPSKTAIAPVNPTFLPR---------SEDEREMCSRTIYCTNIDKKVTQG 290 (337)
Q Consensus 223 V~F~~~e~A~~Al~-l~g~~l~--g~~I~V~~sk~~~~~~~~~~~p~---------~~~~~~~~~~~l~V~NLp~~~tee 290 (337)
.+|.+.++|..|+. +++.... |+.+.+.++..... ..|.+. .........++|||+|||..++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 87 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAI---HSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQED 87 (165)
T ss_dssp ----------------------------------------------------------CCCCC-CEEEEEESCCTTCCHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccc---cCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 78899999999987 7775544 55555554321110 001110 011122356899999999999999
Q ss_pred HHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 291 DIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 291 ~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+||+.
T Consensus 88 ~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 88 EIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp HHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 999999997 99999999987 467899999999999999999974
No 213
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=97.23 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=54.8
Q ss_pred ceeeEeCCCCCC------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~------tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++|||+|||..+ ++++|+++|++| |.|..+.++++.++++|||||+|.+.++|.+|++.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT-CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc-CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 689999999999 789999999997 99999999877788999999999999999999974
No 214
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.32 E-value=4.2e-12 Score=97.29 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=57.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.+.++.+.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 99999999998788999999999999999999974
No 215
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=99.99 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=57.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||+.+++++|+++|++| |.|..|.++.+.+.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPF-GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTT-SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999997 99999999998777899999999999999999974
No 216
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=4.5e-12 Score=99.89 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=57.4
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---CCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d---~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF-GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc-CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999997 99999999988 467899999999999999999974
No 217
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=95.01 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=55.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|.+|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999997 99999999987 467899999999999999999974
No 218
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.31 E-value=8.5e-13 Score=129.89 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=56.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+|+++|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+||+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 356899999999999999999999997 99999999987 467899999999999999999964
No 219
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=7.7e-12 Score=96.28 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=57.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT-SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 367999999999999999999999997 999999999874 57899999999999999999974
No 220
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.30 E-value=7.5e-12 Score=96.47 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=56.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQA-GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999875 67899999999999999999973
No 221
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.3e-12 Score=97.80 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=56.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 71 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHh
Confidence 56999999999999999999999997 999999999874 66899999999999999999973
No 222
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.6e-12 Score=101.39 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=58.4
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||+|||..+++++|+++|++| |.|..|.++.+.+.++|||||+|.+.++|.+|++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT-CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc-CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 3467999999999999999999999997 99999999998777899999999999999999974
No 223
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=8.9e-12 Score=97.65 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=56.7
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTF-GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc-CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 356899999999999999999999997 999999999874 6789999999999999999997
No 224
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.7e-12 Score=97.19 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=57.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999885 67889999999999999999964
No 225
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.30 E-value=5.9e-12 Score=99.12 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999874 67899999999999999999973
No 226
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=7.4e-12 Score=99.29 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999884 57899999999999999999974
No 227
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.29 E-value=1.1e-11 Score=99.18 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=57.2
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 367999999999999999999999997 99999999987 467899999999999999999974
No 228
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.3e-12 Score=95.36 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999874 67899999999999999999973
No 229
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.29 E-value=9.1e-12 Score=94.69 Aligned_cols=60 Identities=28% Similarity=0.445 Sum_probs=55.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|.+|+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 45899999999999999999999997 99999999987 46789999999999999999994
No 230
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.29 E-value=8.6e-12 Score=93.59 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=54.8
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+|++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 689999999999999999999997 999999999873 67899999999999999999974
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.8e-12 Score=102.20 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=53.5
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+.++|||+|||+.+++++|+++|++| |.|..|.|+++ +|||||+|++.++|.+|++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEEGG----GTEEEEECSCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeCC----CCEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 99999999986 56999999999999999974
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=97.62 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=53.2
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.++++|||+|||..+|+++|+++|++| |.|.++.++++ +|||||+|++.++|.+|++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK----KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHH
Confidence 367899999999999999999999998 99999999864 46999999999999999974
No 233
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.29 E-value=5.7e-12 Score=94.99 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=55.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcc-CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 56999999999999999999999997 999999998873 56899999999999999999963
No 234
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=5.8e-12 Score=97.75 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=55.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC-----CCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~-----~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+.. .++|||||+|.+.++|.+||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV-GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 9999999998743 6789999999999999999984
No 235
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.6e-12 Score=99.34 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=53.3
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+.++|||+|||..+++++|+++|++| |.|..|.++++ +|||||+|++.++|.+|++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILMLKG----KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 99999999876 56999999999999999974
No 236
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=95.66 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=56.5
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF-GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 999999999874 67899999999999999999973
No 237
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=9e-12 Score=99.86 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=57.4
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|+|+++. +.++|||||+|.+.++|.+||+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF-GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT-SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 467999999999999999999999997 999999999874 67899999999999999999975
No 238
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=8.4e-12 Score=97.02 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=56.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY-GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999874 67899999999999999999953
No 239
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.28 E-value=6.4e-12 Score=100.03 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=55.7
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999997 999999999874 67899999999999999999974
No 240
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.28 E-value=8.9e-12 Score=96.49 Aligned_cols=60 Identities=28% Similarity=0.307 Sum_probs=55.7
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV-GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999997 999999999874 67899999999999999999963
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=9.2e-12 Score=97.92 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=57.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 356999999999999999999999997 999999999874 67899999999999999999974
No 242
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.28 E-value=8.3e-12 Score=98.55 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCC------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~------tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+ ++++|+++|++| |.|..|.+++..+.++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG-SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC-CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999 789999999997 99999999876788999999999999999999974
No 243
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.28 E-value=4.6e-12 Score=97.11 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=52.4
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G--~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+|||+|||..+++++|+++|++| | .|..++++.+ .+.++|||||+|.+.++|.+||+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~-G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT-TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh-CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH
Confidence 589999999999999999999997 9 9999999987 467899999999999999999963
No 244
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=96.70 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=56.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhh-cCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~-~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++ | |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999 7 999999999884 66899999999999999999983
No 245
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=9.7e-12 Score=97.70 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 356999999999999999999999997 999999999874 67899999999999999999984
No 246
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=96.52 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=56.5
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceE-EEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ-RLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~-~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|. .|+++++. +.++|||||+|.+.++|.+|++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM-GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT-TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh-CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 56999999999999999999999997 9999 99999874 67899999999999999999973
No 247
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=8.8e-12 Score=97.70 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=57.2
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF-GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT-CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999997 999999999873 67899999999999999999983
No 248
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=95.26 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKY-GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTT-SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999874 56899999999999999999963
No 249
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1e-11 Score=97.05 Aligned_cols=61 Identities=13% Similarity=0.280 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999998 999999999874 56899999999999999999963
No 250
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4.2e-12 Score=93.92 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=54.8
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+|++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 479999999999999999999997 999999999874 67899999999999999999974
No 251
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.27 E-value=5.2e-12 Score=93.10 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=53.7
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+|||+|||+.+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 60 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHC
Confidence 58999999999999999999997 999999999874 67899999999999999999873
No 252
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.27 E-value=1.1e-11 Score=99.23 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=56.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|+|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF-GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG-SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999874 67899999999999999999964
No 253
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.27 E-value=3.9e-12 Score=93.68 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=53.9
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF-GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH-SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 58999999999999999999997 999999998874 67899999999999999999974
No 254
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.7e-11 Score=96.41 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=56.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999874 67899999999999999999974
No 255
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.1e-11 Score=97.67 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=55.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEE-EEEecc-CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGD-YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~-v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||..+++++|+++|++| |.|.. |.|+.+ .++++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGL-EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTC-CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 56899999999999999999999997 99987 888877 467899999999999999999974
No 256
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=8.1e-12 Score=96.44 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=56.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEE-EEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v-~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+ .++.+ .+.++|||||+|.+.++|.+||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF-GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999 99987 367899999999999999999983
No 257
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.25 E-value=1.8e-11 Score=97.24 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=56.7
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTT-SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999874 56899999999999999999973
No 258
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=3.2e-12 Score=101.22 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=61.3
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-hCCeEecccceE
Q 019691 183 VSDIDQQVTEEQLATLF------------LTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (337)
Q Consensus 183 V~nLp~~vtee~L~~~F------------~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~ 248 (337)
+.+||..+++++|++.| ++||.|.+|+++++..+ ++|||||+|.+.++|.+|+. |+|..+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777888777666 99999999999987754 68999999999999999998 999999999999
Q ss_pred EccC
Q 019691 249 VLPS 252 (337)
Q Consensus 249 V~~s 252 (337)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 259
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=97.18 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=56.5
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 56999999999999999999999997 999999999874 67899999999999999999983
No 260
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=7.4e-12 Score=98.59 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=54.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+|+++|+++|++| |. ..|.|+.+. ++++|||||+|.+.++|.+||++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPL-NP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSC-CC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc-Cc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 56899999999999999999999997 84 499998874 67899999999999999999964
No 261
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.25 E-value=1.8e-11 Score=96.43 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=57.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999997 999999999875 67899999999999999999984
No 262
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.4e-11 Score=97.70 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCCEEEEcCC--CCCCc--------HHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEEcCHHHHHHHHH-hCCe
Q 019691 176 VIRRTVYVSDI--DQQVT--------EEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGT 240 (337)
Q Consensus 176 ~~~rtVfV~nL--p~~vt--------ee~L~~~F~~~G~V~~v~i~~d~~~----~kg~aFV~F~~~e~A~~Al~-l~g~ 240 (337)
.+++.|.+.|+ |..+. +++|++.|++||.|.+|+|++++.+ ++|+|||+|.+.++|.+|+. |||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 33332 3689999999999999999988653 58999999999999999997 9999
Q ss_pred EecccceEEccC
Q 019691 241 MLGFYPVRVLPS 252 (337)
Q Consensus 241 ~l~g~~I~V~~s 252 (337)
.+.||+|+|.+.
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999999975
No 263
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.8e-11 Score=98.07 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=57.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS-CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 356899999999999999999999997 999999999874 67899999999999999999974
No 264
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.25 E-value=4.9e-12 Score=99.04 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=56.3
Q ss_pred ccceeeEeCCCC------CCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDK------KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~------~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||. .+++++|+++|++| |.|..|.|+.+. ++++|||||+|.+.++|.+||+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~-G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA-GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc-CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 458999999999 99999999999997 999999999885 67899999999999999999973
No 265
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=8.8e-12 Score=98.41 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=52.9
Q ss_pred ccceeeEeCCCC-CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~-~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++|||+|||. .+|+++|+++|++| |.|.+|.|++++ |||||+|++.++|.+|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNKI----NEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSSS----SCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcCC----CEEEEEECCHHHHHHHHHH
Confidence 568999999999 99999999999998 999999998764 5999999999999999974
No 266
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.24 E-value=3.1e-11 Score=96.91 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|+++++. +.++|||||+|.+.++|.+||+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999997 999999999874 67899999999999999999974
No 267
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.2e-12 Score=100.39 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=56.6
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCce-EEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I-~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+|+++|+++|++| |.| ..|.|+.+. +.++|||||+|.+.++|.+||++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 356899999999999999999999997 999 889998885 67899999999999999999975
No 268
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.4e-11 Score=96.75 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=54.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| | |..|.|+.+. +.++|||||+|.+.++|.+||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHG
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHh
Confidence 56999999999999999999999997 9 9999999884 6789999999999999999994
No 269
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.24 E-value=1e-11 Score=97.16 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=56.0
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 56899999999999999999999997 999999999885 6689999999999999999986
No 270
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=94.52 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=56.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--------EEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--------v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|.. ++++.+. +.++|||||+|.+.++|.+|++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTT-SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 56999999999999999999999997 99999 9998874 67899999999999999999973
No 271
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.8e-11 Score=94.93 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=55.5
Q ss_pred ccceeeEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||..+++++|+ ++|++| |.|..|.++.+... +|||||+|.+.++|.+||+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999 999998 99999999988655 88999999999999999973
No 272
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.5e-11 Score=96.90 Aligned_cols=61 Identities=28% Similarity=0.541 Sum_probs=56.2
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 356899999999999999999999997 999999999875 5789999999999999999994
No 273
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.23 E-value=3.3e-12 Score=106.45 Aligned_cols=102 Identities=19% Similarity=0.075 Sum_probs=54.5
Q ss_pred eEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCCHHHHHHHHh
Q 019691 219 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (337)
Q Consensus 219 g~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 297 (337)
++||.+|..++.+..++. +.. +.++...--.. ............++|||+|||+++|+++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~------------g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGS------------GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchh-ccCCCCCCCCC------------CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 577888887777766664 222 22332221000 0000011123568999999999999999999999
Q ss_pred hcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 298 SVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 298 ~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+| | |..|.|+.+. ++++|||||+|.+.++|.+||++
T Consensus 69 ~~-G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~ 105 (139)
T 2hgn_A 69 PL-N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 105 (139)
T ss_dssp SC-C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTC
T ss_pred hc-C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhh
Confidence 97 8 7799998874 67899999999999999999953
No 274
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=98.29 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=56.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH-GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS-SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 999999999885 67899999999999999999974
No 275
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=2.4e-11 Score=96.22 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=52.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++|||+|||..+++++|+++|++| |.|..|.++++ +|||||+|++.++|.+|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF-GTICYVMMMPF----KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 99999999875 56999999999999999973
No 276
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.3e-11 Score=96.97 Aligned_cols=61 Identities=28% Similarity=0.313 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMA-GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999874 66899999999999999999973
No 277
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.23 E-value=1.5e-11 Score=93.14 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC--C-CceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--H-STRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~--~-~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+.. . ++|||||+|.+.++|.+|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY-GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 45899999999999999999999997 9999999988752 3 789999999999999999973
No 278
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=9.6e-12 Score=97.22 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 56999999999999999999999997 999999998873 66899999999999999999964
No 279
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-11 Score=99.86 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=57.5
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||+|||..+++++|+++|+.| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH-SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3467899999999999999999999997 999999999874 56899999999999999999974
No 280
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.1e-11 Score=95.62 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=55.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|..+ ..++|||||+|.+.++|.+||+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 99999999665 45789999999999999999963
No 281
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.22 E-value=3.1e-11 Score=95.72 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=56.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999998874 67899999999999999999973
No 282
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.22 E-value=3e-11 Score=99.17 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|+++.+. +.++|||||+|.+.++|.+||+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTT-SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999874 57899999999999999999974
No 283
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.22 E-value=1.7e-11 Score=93.99 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=50.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
....+|||+|||..+|+++|+++|++| |.|..|.|+++ ++|||||+|.+.++|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP---FRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS---CCSEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC---CCCEEEEEECCHHHHHHHc
Confidence 356899999999999999999999997 99999999885 7889999999999998654
No 284
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.22 E-value=2.8e-11 Score=110.64 Aligned_cols=78 Identities=28% Similarity=0.328 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcCHHHHHHHHH-h-CCeEec---ccceEEc
Q 019691 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-L-AGTMLG---FYPVRVL 250 (337)
Q Consensus 177 ~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~-~kg~aFV~F~~~e~A~~Al~-l-~g~~l~---g~~I~V~ 250 (337)
..++|||+|||..+|+++|+++|+.||.|..|+++.+..+ ++|||||+|.+.++|.+|+. | ++..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 4679999999999999999999999999999999988654 68999999999999999998 7 555555 8999999
Q ss_pred cCCC
Q 019691 251 PSKT 254 (337)
Q Consensus 251 ~sk~ 254 (337)
++..
T Consensus 175 ~~~~ 178 (261)
T 3sde_A 175 PMEQ 178 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8753
No 285
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=1.5e-11 Score=98.05 Aligned_cols=62 Identities=8% Similarity=0.341 Sum_probs=56.2
Q ss_pred cccceeeEeCCCCCCCHHHHH---HHHhhcCCceEEEEEeccCC-----CCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~---~~F~~~~G~I~~v~i~~d~~-----~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||+.+++++|+ ++|++| |.|..|.++++.. .++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 356899999999999999999 999997 9999999998753 4679999999999999999984
No 286
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=3.3e-11 Score=94.47 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=54.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| | |..|.++.+. +.++|||||+|.+.++|.+||+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGG
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHh
Confidence 56999999999999999999999997 7 9999999884 6789999999999999999994
No 287
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.22 E-value=2.3e-11 Score=92.96 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=52.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+.-|||+||++.+|+++|+++|.+| |+|.++.+.. ++|||||+|.+.++|.+|++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYL----NQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEET----TTTEEEEEESSHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcC----CCcEEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999998 9999999976 577999999999999999874
No 288
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.21 E-value=1.5e-11 Score=99.26 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=55.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCc---eEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~---I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+|+++|+++|+.| |. |..|+|+.+. ++++|||||+|.+.++|.+||++
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~ 80 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDC-TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKK 80 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTS-CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGG
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhc
Confidence 46899999999999999999999996 98 8999998874 67899999999999999999974
No 289
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=102.68 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=55.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G--~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| | .|..|+|+.| .+.++|||||+|.+.++|.+||+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI-GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT-TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999997 9 9999999988 477899999999999999999975
No 290
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=6.1e-11 Score=94.56 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=56.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF-GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999885 66899999999999999999973
No 291
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.21 E-value=1.8e-11 Score=99.13 Aligned_cols=62 Identities=31% Similarity=0.464 Sum_probs=56.7
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHH
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
....++|||+|||..+++++|+++|++| |.|..|.++.+ .+.++|||||+|.+.++|.+||+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSC-GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTT-SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 3457899999999999999999999997 99999999987 46789999999999999999994
No 292
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=98.77 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=54.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-----CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-----~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|. +.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF-GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT-CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 46899999999999999999999997 9999 7777764 47899999999999999999975
No 293
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.9e-11 Score=95.77 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=56.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV-GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT-SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc-CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 999999999874 66899999999999999999973
No 294
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.6e-11 Score=96.82 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=54.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||..+|+++|+++|+++ .|..|.|+.+. ++++|||||+|.+.++|.+||++
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 75 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR 75 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhc
Confidence 35899999999999999999999986 79999999874 67899999999999999999964
No 295
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.20 E-value=3e-11 Score=98.13 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=56.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+|+++|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+||+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 99999999988 467899999999999999999974
No 296
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.9e-11 Score=96.35 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=56.2
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceE--------EEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--------RLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~--------~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|. .|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTT-SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc-CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 367999999999999999999999997 9999 69988873 67899999999999999999973
No 297
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=100.16 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=54.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCce----EEEEEecc-CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGD-YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I----~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||+.+|+++|+++|++| |.| ..|.|+.+ .++++|||||+|.+.++|.+||+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~-g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQH-CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT-SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhh-CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 45899999999999999999999997 764 68888887 477899999999999999999974
No 298
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.19 E-value=1.4e-11 Score=94.96 Aligned_cols=61 Identities=20% Similarity=0.060 Sum_probs=54.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS-CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999997 999888777753 56899999999999999999973
No 299
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.9e-11 Score=94.83 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=55.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCc-eEEEEEe-ccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLL-GDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~-I~~v~i~-~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |. |..|.++ .+. +.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 46899999999999999999999998 98 9999998 554 47899999999999999999974
No 300
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=3.5e-11 Score=93.90 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=52.5
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++|||+|||..+|+++|+++|++| |.|..|.++.+ ++|||||+|.+.++|.+|++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY-GPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH-CCCSEEEEESS---SSSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHH
Confidence 479999999999999999999998 99999999988 778999999999999999973
No 301
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=4.7e-11 Score=94.59 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.|+.+ |||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEETT-----TEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEecC-----CEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 99999999987 6999999999999999984
No 302
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.18 E-value=5.7e-11 Score=100.21 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=57.1
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+|+++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS-GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 999999999884 56899999999999999999984
No 303
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=100.62 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=56.1
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--EEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||+|||+.+|+++|+++|++| |.|.. |+|++|. +.++|||||+|.+. +|.+||+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~-G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~ 85 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY-AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI 85 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG-CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 3467899999999999999999999997 99977 9999885 67899999999999 99999874
No 304
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.18 E-value=6.6e-11 Score=97.50 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=57.4
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+||+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 3467999999999999999999999997 999999999873 67899999999999999999963
No 305
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=96.90 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=55.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCc---eEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~---I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||..+|+++|+++|+.+ |. |..|.|+.+. ++++|||||+|.+.++|.+||++
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~-g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~ 74 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDC-RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK 74 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTS-CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc-CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 56899999999999999999999996 87 8999999875 67899999999999999999973
No 306
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.18 E-value=6.2e-11 Score=91.84 Aligned_cols=57 Identities=7% Similarity=0.227 Sum_probs=52.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.+..+ +|||||+|.+.++|.+|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRF-GSIRTIDHVKG----DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTT-SCEEEEEECSS----SCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEeCC----CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 99999999875 56999999999999999973
No 307
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.18 E-value=2.1e-11 Score=94.58 Aligned_cols=61 Identities=20% Similarity=0.053 Sum_probs=54.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTS-CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc-CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 99987777665 367899999999999999999963
No 308
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=1.2e-10 Score=102.27 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=75.8
Q ss_pred CHHHHHHHHH-h--CCeEecccceEEccCCCCCCCCCCCCCCCCc--cccccccceeeEeCCCCCCCHHHHHHHHhhcCC
Q 019691 227 DEEGARAALS-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (337)
Q Consensus 227 ~~e~A~~Al~-l--~g~~l~g~~I~V~~sk~~~~~~~~~~~p~~~--~~~~~~~~~l~V~NLp~~~tee~L~~~F~~~~G 301 (337)
+.+.+..|+. . ....+.+...+|..... .+ .|... .......++|||+|||..+++++|+++|++| |
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~--~p-----~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS--KP-----LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK-G 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT--SC-----CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS-C
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc--CC-----CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC-C
Confidence 5677788887 4 45566666666655311 01 11110 1123356899999999999999999999997 9
Q ss_pred ceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 302 EVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 302 ~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.|..|+++++. +.++|||||+|.+.++|.+||+.
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 99999999874 67899999999999999999974
No 309
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=96.15 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=53.5
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---CCCceEEEEEeCChHHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~---~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...++|||+|||..+++++|+++|++| | |..|.|+.+. ++++|||||+|.+.++|.+||+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS-C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHh
Confidence 357999999999999999999999997 9 9999999874 6789999999999999999994
No 310
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.17 E-value=2.5e-11 Score=100.73 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=55.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCc---eEEEEEeccC-CCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~---I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||+.+|+++|+++|++| |. |..|+|+++. ++++|||||+|.+.++|.+||+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~-G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDC-TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTC-CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 45899999999999999999999997 98 8899999874 7789999999999999999997
No 311
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.17 E-value=6e-11 Score=96.19 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=56.6
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHH
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTT-SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999997 999999999875 6689999999999999999997
No 312
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.6e-11 Score=90.06 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=51.1
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.+. ++||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQY-GKVLECDII------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTS-SCEEEEEEE------TTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEE------CCEEEEEECCHHHHHHHHHH
Confidence 56999999999999999999999997 999999998 46999999999999999963
No 313
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=7.5e-11 Score=90.20 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=54.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| .|..|.++++ .+.++|||||+|.+.++|.+||+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 56899999999999999999999986 8999999987 46789999999999999999997
No 314
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.16 E-value=2.7e-11 Score=92.42 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=54.0
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.+ |.+|++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 689999999999999999999997 999999999874 678999999999999 9999874
No 315
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.16 E-value=5.4e-11 Score=94.42 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=50.7
Q ss_pred ccceeeEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||.. +++++|+++|++| |.|..|.+ ++|||||+|.+.++|.+||+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~-G~v~~v~i------~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY-GRVAGCSV------HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG-SCCSEEEE------ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC-CCeEEEEE------eCCEEEEEECCHHHHHHHHHH
Confidence 4589999999999 9999999999997 99999998 467999999999999999963
No 316
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=7.1e-11 Score=95.63 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHHhhcCCCeeEEEEecCCCC------CceEEEEEEcCHHHHHHHHH-hCCeEecc
Q 019691 177 IRRTVYVSDIDQ--Q---VTEEQLATLFLTCGQVVDCRICGDPNS------VLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (337)
Q Consensus 177 ~~rtVfV~nLp~--~---vtee~L~~~F~~~G~V~~v~i~~d~~~------~kg~aFV~F~~~e~A~~Al~-l~g~~l~g 244 (337)
++++|++.|+-. + --+++|++.|++||.|.+|+|++++.+ ++|++||+|.+.++|.+|++ |||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 679999999842 2 236899999999999999999987542 46999999999999999998 99999999
Q ss_pred cceEEccC
Q 019691 245 YPVRVLPS 252 (337)
Q Consensus 245 ~~I~V~~s 252 (337)
|.|+|.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999985
No 317
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.16 E-value=4.7e-11 Score=97.82 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=53.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceE--EEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--RLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~--~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||+.+|+++|+++|++| + |. .|.|+.|. ++++|||||+|.+.++|.+||+.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-E-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-C-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 45889999999999999999999996 5 66 89998874 77899999999999999999974
No 318
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=8.5e-11 Score=93.11 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=53.6
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++.+ +|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF-GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHH
Confidence 456899999999999999999999997 99999999987 56999999999999999963
No 319
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-10 Score=87.68 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=52.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+.++++ +|||||+|.+.++|.+|++.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQF-GEIRTITVVQR----QQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTT-SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhC-CCEeEEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 99999999875 56999999999999999973
No 320
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=8.1e-11 Score=94.38 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=52.9
Q ss_pred cccceeeEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.+.++|||+|||.. +++++|+++|++| |.|.+|.|++. +|||||+|++.++|.+|++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPY-GKIKNYILMRM----KSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTT-SCCSEEEEETT----TTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhc-CCEEEEEEecC----CCEEEEEECCHHHHHHHHHH
Confidence 46789999999998 9999999999997 99999999764 56999999999999999973
No 321
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.15 E-value=8.5e-11 Score=93.85 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=54.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+ +.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 99999999876 44588999999999999999973
No 322
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.2e-11 Score=92.69 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=51.7
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| |.|..|.++.+ ++|||||+|.+.++|.+|+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY-GDVMDVFIPKP---FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT-SCCCEEECCSS---CCSCCEEECSCHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEEecC---CCCEEEEEECCHHHHHHHhc
Confidence 46899999999999999999999997 99999999875 67899999999999987653
No 323
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.1e-10 Score=91.07 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..+++.+ ++|||||+|.+.++|.+|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHYP----EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEET----TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEec----CCCEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 9999999984 466999999999999999964
No 324
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.3e-10 Score=90.33 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=52.9
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.+.++ +|||||+|.+.++|.+|++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY-GKAGEVFIHKD----KGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT-CCCSEEEEETT----TTEEEEECSSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEecC----CCEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999997 99999999876 56999999999999999964
No 325
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.13 E-value=7.2e-11 Score=94.54 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=53.1
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+|||+.+++++|+++|++| | .|..+.+..+ .++|||||+|.+.++|.+||+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~-G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN-SLETTFSSVNTR--DFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH-TCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh-CCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999997 9 8999988643 4788999999999999999973
No 326
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.13 E-value=9.1e-11 Score=93.21 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=52.6
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
....++|||+|||..+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF-GPMKEVKIL------NGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT-SCCCEEEEE------TTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEE------CCEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999997 999999998 57999999999999999974
No 327
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.12 E-value=7.2e-11 Score=94.76 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=51.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||.|||..+++++|+++|++| |.|..|.|+.+ |||||+|.+.++|.+||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG-SCEEEEEECTT-----SEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEecC-----CEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999997 99999999887 6999999999999999984
No 328
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=88.51 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=51.6
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+|++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~v~~~~~------~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY-GPVIECDIVKD------YAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT-SCCCEEEECSS------EEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEECC------EEEEEECCHHHHHHHHHH
Confidence 356999999999999999999999997 99999999855 999999999999999963
No 329
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=1.5e-10 Score=110.07 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCCCCEEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEec---cc--c
Q 019691 175 EVIRRTVYVSD--IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG---FY--P 246 (337)
Q Consensus 175 ~~~~rtVfV~n--Lp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~---g~--~ 246 (337)
...+++|||+| |+..+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++ |||..+. |+ +
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 45778999999 578999999999999999999988754 46899999999999999998 9999873 33 5
Q ss_pred eEEccC
Q 019691 247 VRVLPS 252 (337)
Q Consensus 247 I~V~~s 252 (337)
|+|.+.
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 777664
No 330
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.11 E-value=7.8e-11 Score=90.93 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=52.7
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+|++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEE 72 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE-EEECCE---EETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CcEEEe---CCCCCcceEEEEEECCHHHHHHHHHH
Confidence 356999999999999999999999997 888766 45577899999999999999999983
No 331
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.9e-10 Score=87.51 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccCCC
Q 019691 188 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (337)
Q Consensus 188 ~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~sk~ 254 (337)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|++ +++ +.+++|+|.|++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 5799999999999999999999983 357999999999999999998 544 6799999999753
No 332
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.11 E-value=1.1e-10 Score=105.18 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=55.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G--~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+||+..+|+++|+++|++| | .|..|+|+.+ .++++|||||+|.+.++|.+||+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT-TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH-CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999997 9 9999999998 467899999999999999999973
No 333
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=94.83 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=53.2
Q ss_pred ccceeeEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++|||+|||+.+++++|+ ++|++| |.|..|.+.. .+.++|||||+|.+.++|.+|++.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHH
Confidence 46899999999999999876 699998 9999998865 467899999999999999999964
No 334
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-10 Score=88.01 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=51.7
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+|++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~~~------~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR-GRVIECDVVKD------YAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH-SCEEEEEECSS------CEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC-CCEEEEEEECC------EEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999998 99999999854 999999999999999974
No 335
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.7e-10 Score=89.34 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=51.0
Q ss_pred cccceeeEeCCCC-CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~-~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||. .+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~------~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK------NAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEE------TTEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe------CCEEEEEECCHHHHHHHHHH
Confidence 3568999999998 99999999999997 999999985 56999999999999999974
No 336
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.8e-11 Score=96.94 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=52.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
...+|||+|||+.+|+++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|.+||+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKL-DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSS-CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 55899999999999999999999996 99987444443 46789999999999999999997
No 337
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-10 Score=89.52 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=51.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|. +.++.+ .++|||||+|.+.++|.+|++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~-G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALREL-GSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHT-TCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhc-CCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999997 9986 666654 5678999999999999999964
No 338
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.10 E-value=2.6e-10 Score=88.67 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=51.4
Q ss_pred cccceeeEeCCCC-CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~-~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||. .+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK------NAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEEC------SSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe------CCEEEEEECCHHHHHHHHHH
Confidence 3569999999998 99999999999997 999999984 67999999999999999973
No 339
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=2.1e-10 Score=91.49 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=51.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.+++ ++|||||+|.+.++|.+||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF-GSLGRVLLPE----GGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCS----SSSCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999997 9999999875 456999999999999999973
No 340
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.08 E-value=7.1e-11 Score=91.25 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=54.0
Q ss_pred ccceeeEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~----~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++|||+|||..+++++|+ ++|++| |.|..|.+.. .+.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSR-SLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHH
Confidence 56899999999999999999 999997 9999999874 355678999999999999999974
No 341
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=90.25 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=51.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d-~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++| |.| +++.+ .+.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA-TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC-SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 357999999999999999999999997 877 45555 467899999999999999999973
No 342
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.9e-10 Score=89.86 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=52.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCce----EEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I----~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+|+++|+++|++| |.| ..+++. .+.++|||||+|.+.++|.+||+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARF-QEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHH-HHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999998 998 455544 577889999999999999999974
No 343
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=4e-10 Score=90.61 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=64.2
Q ss_pred CCCCCEEEEcCCCCCC----------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEec
Q 019691 175 EVIRRTVYVSDIDQQV----------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~v----------tee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~ 243 (337)
+..++.|.+.|+=..- -+++|++.|++||.|.+|.+.++. ++|++||+|.+.++|.+|++ |||..|.
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3467889999884321 135789999999999999997653 58999999999999999998 9999999
Q ss_pred ccceEEccC
Q 019691 244 FYPVRVLPS 252 (337)
Q Consensus 244 g~~I~V~~s 252 (337)
|+.|+|.++
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999999985
No 344
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.07 E-value=2.7e-10 Score=89.24 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=50.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.++++ ||||+|.+.++|.+||+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~------~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKLKD------YAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEECSS------CEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC------EEEEEeCCHHHHHHHHHH
Confidence 56899999999999999999999998 99999998743 999999999999999974
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.06 E-value=3.5e-10 Score=85.40 Aligned_cols=57 Identities=30% Similarity=0.429 Sum_probs=51.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcC---C-------ceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVC---G-------EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~---G-------~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++|. | .|..+.+.++ +|||||+|.+.++|.+|+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~ 71 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMA 71 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHh
Confidence 468999999999999999999999862 6 8999999876 5699999999999999983
No 346
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=4.9e-10 Score=86.28 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=49.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| |.|..| +.+....+ ||||+|.+.++|.+||+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF-GPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT-SCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh
Confidence 45899999999999999999999997 999988 34433333 99999999999999997
No 347
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.04 E-value=6.3e-11 Score=92.42 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=52.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHA 334 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale 334 (337)
..++|||+|||..+++++|+++|++| |.|.. .++.+ .+.++|||||+|.+.++|.+||+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL-FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh
Confidence 56899999999999999999999998 98887 44444 36789999999999999999997
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.04 E-value=3.5e-10 Score=97.85 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=56.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|..|.|+.+. +.++|||||+|.+.++|.+||+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHT-SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 45899999999999999999999997 999999999885 67899999999999999999973
No 349
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.7e-10 Score=91.50 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=51.3
Q ss_pred ccceeeE--eCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYC--TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V--~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.++||| +||+..+++++|+++|++| |.|..|.++.+ +|||||+|.+.++|.+|++.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPPN----KPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHH-SCEEEEECCTT----CSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHH
Confidence 5688999 6699999999999999998 99999988754 57999999999999999974
No 350
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.03 E-value=5.8e-10 Score=95.13 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=52.9
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|||+||++.+|+++|+++|++| |.|.+|.|..+. ++|||||+|.+.++|.+|++.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKN--NQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHH
Confidence 45789999999999999999999998 999999987543 578999999999999999974
No 351
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=2.2e-10 Score=87.86 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=49.0
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCc-eEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~-I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |. |..+.+. ++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDR-KLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIET 63 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHT-TCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCceEEEEEc-----CCCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999997 98 6666552 467999999999999999973
No 352
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.2e-09 Score=84.90 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=50.0
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcC-CceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVC-GEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~-G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|++|. |.|..|.+. +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKA 70 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHH
Confidence 3568999999999999999999999842 789988875 45999999999999999973
No 353
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=5.5e-10 Score=87.06 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=50.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc--CCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d--~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|||..+++++|+++|+.| + .+.++.+ .+.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 73 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999876 3 5666665 467899999999999999999973
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.00 E-value=8.8e-10 Score=90.55 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=51.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceE-EEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~-aFVeF~~~e~A~~Ale~ 335 (337)
....|||+||++.+|+++|+++|++| |.|.+|.+..+. +|+ |||+|.+.++|.+|++.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKN---NQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHH
Confidence 44678899999999999999999997 999999887643 567 99999999999999974
No 355
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=3.9e-11 Score=96.20 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEE--------EEEeccC--CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~--------v~i~~d~--~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| |.|.. |.++.+. +.++|||||+|.+.++|.+||+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 76 (116)
Confidence 56899999999999999999999997 99998 8888773 67899999999999999999873
No 356
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.99 E-value=2.9e-10 Score=94.44 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=52.2
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEE--------EEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL--------RLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v--------~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+|+++|+++|++| |.|..+ .+. ..+.++|||||+|.+.++|.+||+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRY-VDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGG-CCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHH
Confidence 56899999999999999999999997 988764 222 3477899999999999999999974
No 357
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=84.41 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=51.8
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEE-EeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~-i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||+.+++++|+++|++| |.|..++ ++.+... +.|||+|.+.++|.+|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~ 73 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSET--AVVNVTYSSKDQARQALDK 73 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999998 9999994 7776543 3499999999999999973
No 358
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.98 E-value=4.5e-10 Score=85.46 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=50.6
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|||..+++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE----GGGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe----CCCcEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999996 89999884 5678999999999999999973
No 359
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=1.5e-09 Score=88.55 Aligned_cols=56 Identities=25% Similarity=0.201 Sum_probs=49.5
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceE-EEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~-aFVeF~~~e~A~~Ale~ 335 (337)
...|||+||+..+++++|+++|++| |.|.+|.|... .|| |||+|.+.++|.+|++.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHH
Confidence 3457899999999999999999997 99999998753 276 99999999999999974
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.4e-09 Score=88.75 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=50.2
Q ss_pred ceeeEeCC----CCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCC----hHH----HHHHHH
Q 019691 276 RTIYCTNI----DKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM----VSE----PFSWHA 334 (337)
Q Consensus 276 ~~l~V~NL----p~~~tee~L~~~F~~~~G~I~~v~i~~d~--~~~~g~aFVeF~~----~e~----A~~Ale 334 (337)
..|||+|| |+.+++++|+++|++| |+|.++.++.|+ +.++|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f-GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY-GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT-SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 9999999999999997 999999999985 6799999999996 333 667765
No 361
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=6.4e-09 Score=80.39 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=49.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+|+ .+++++|+++|++| |.|..|.+. .++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~-G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMD----PPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTT-SCEEEEEEE----TTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhC-CCEEEEEec----CCCCEEEEEECCHHHHHHHHHH
Confidence 5689999996 89999999999997 999999985 4566999999999999999964
No 362
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.88 E-value=6.5e-09 Score=82.19 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=53.2
Q ss_pred cccceeeEeCCCC-----CCCHHHHHHHHhhcCCceEEEEEeccC---CCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDK-----KVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~-----~~tee~L~~~F~~~~G~I~~v~i~~d~---~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.++++|+|.||.. .-++++|++.|++| |.|.+|.|++++ ++++|||||+|.+.++|.+|++.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~-G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ 75 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY-GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVD 75 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG-SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc-CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHH
Confidence 3678999999963 23789999999998 999999999874 46899999999999999999874
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.83 E-value=4.5e-09 Score=85.16 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=49.8
Q ss_pred cccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++|||+|+ .+++++|+++|++| |.|..|.+. .++|||||+|.+.++|.+||+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~-G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMD----PPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT-CCCSCEEEE----TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc-CCEEEEEEe----CCCCEEEEEECCHHHHHHHHHH
Confidence 35689999996 69999999999997 999999986 4567999999999999999963
No 364
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=77.97 Aligned_cols=71 Identities=25% Similarity=0.288 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCC----CCcH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceE
Q 019691 177 IRRTVYVSDIDQ----QVTE----EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVR 248 (337)
Q Consensus 177 ~~rtVfV~nLp~----~vte----e~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~ 248 (337)
+.-||+|.-.|. .+-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++|+|..+.||.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 446888877662 3333 5788999999999999999875 8999999999999999999999999999
Q ss_pred EccCC
Q 019691 249 VLPSK 253 (337)
Q Consensus 249 V~~sk 253 (337)
|..+.
T Consensus 80 V~lkt 84 (91)
T 2dnr_A 80 IALKS 84 (91)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99864
No 365
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.7e-08 Score=81.70 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcC-HHHHHHHHH-h--CCeEecccceEEcc
Q 019691 177 IRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARAALS-L--AGTMLGFYPVRVLP 251 (337)
Q Consensus 177 ~~rtVfV~nLp~~-vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~-~e~A~~Al~-l--~g~~l~g~~I~V~~ 251 (337)
....|||+||+.. +++++|+++|+.||.|..|.+..+.. .|||.|.+ +.+|..|+. + .+..|.+..+++..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 5578999999999 99999999999999999999998875 79999999 899999997 7 47788888887765
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.76 E-value=8.1e-09 Score=98.21 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=51.6
Q ss_pred cccceeeEeC--CCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTN--IDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~N--Lp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.++++|||+| |+..+|+++|+++|++| |+|.+|.+.. ++|||||+|.+.++|++|++.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~-G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP----NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTT-SCEEEEECCT----TCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC----CCCEEEEEECCHHHHHHHHHH
Confidence 3678999999 57899999999999997 9999988765 467999999999999999975
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.73 E-value=1.1e-08 Score=92.46 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=52.2
Q ss_pred ccceeeEeCCCCCC---------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKV---------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~---------tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++|||+||+..+ ++++|+++|++| |.|..|+|+.+ +|||||+|.+.++|..|+++
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVES----KNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHH
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEECC----CCEEEEEeCCHHHHHHHHHH
Confidence 56899999999998 799999999997 99999999864 56999999999999999874
No 368
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=2.1e-08 Score=77.34 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=44.1
Q ss_pred ceeeEeCCCCCCCHHH----HHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGD----IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~----L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.|||.|||..+++++ |+++|++|.|+|..|. + |+|||+|.+.++|.+|++.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----g---G~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----G---CSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----T---TCEEEEESSHHHHHHHHHH
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----c---CEEEEEECCHHHHHHHHHH
Confidence 4499999999999988 5589999624999981 1 7999999999999999873
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=5.5e-08 Score=76.17 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 285 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 285 ~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+++++|+++|++| |.|..|.|+ +.++|||||+|.+.++|.+||+.
T Consensus 27 ~~~te~~L~~~F~~~-G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY-GEVLNLVLS---SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CSCCHHHHHHHHHTT-SCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhc-CCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHh
Confidence 578999999999997 999999998 36788999999999999999974
No 370
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=5e-08 Score=77.55 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=49.9
Q ss_pred cccceeeEeCCCCCCC-----------HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 273 MCSRTIYCTNIDKKVT-----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 273 ~~~~~l~V~NLp~~~t-----------ee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..+++|+|.||....+ +++|+++|++| |.|..|.| .+. .++|||||+|.+.++|.+|++.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHH
Confidence 4679999999954332 68999999997 99999966 443 4789999999999999999963
No 371
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=5.9e-08 Score=74.60 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCC------CcH---HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccce
Q 019691 177 IRRTVYVSDIDQQ------VTE---EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 247 (337)
Q Consensus 177 ~~rtVfV~nLp~~------vte---e~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I 247 (337)
+.-||+|.-++.. ..+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+||+|+|..+.||.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 4569999988743 232 4688999999999999999885 999999999999999999999999999
Q ss_pred EEccC
Q 019691 248 RVLPS 252 (337)
Q Consensus 248 ~V~~s 252 (337)
+|.+.
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99873
No 372
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.60 E-value=5.6e-08 Score=76.73 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=51.0
Q ss_pred ccceeeEeCC--CCCCC--------HHHHHHHHhhcCCceEEEEEeccCC----CCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNI--DKKVT--------QGDIKLFFESVCGEVQRLRLLGDYQ----HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NL--p~~~t--------ee~L~~~F~~~~G~I~~v~i~~d~~----~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+++.|.|.|+ |..+. +++|++.|++| |.|.+|.|+++.. .++|+|||+|.+.++|.+|++.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~-G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY-GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT-SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc-CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 5688999998 33343 37899999997 9999999998752 5789999999999999999864
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.53 E-value=3.5e-08 Score=77.73 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=44.6
Q ss_pred EeCCCCCCCHHHHHHHH------------hhcCCceEEEEEeccC-CCCceEEEEEeCChHHHHHHHHh
Q 019691 280 CTNIDKKVTQGDIKLFF------------ESVCGEVQRLRLLGDY-QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 280 V~NLp~~~tee~L~~~F------------~~~~G~I~~v~i~~d~-~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+.||+..+++++|++.| ++| |.|.+|.|+++. ++++|||||+|.+.++|.+|++.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~-G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY-GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHH
Confidence 34566666777666655 997 999999999875 67899999999999999999873
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=2e-07 Score=75.33 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=52.1
Q ss_pred ccceeeEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCC-hHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM-VSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~-~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~-~e~A~~Ale~ 335 (337)
....|||.||+.. +++++|+++|++| |+|.+|.+.++.. .|||+|.+ .++|..|++.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAK----EGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCS----EEEEEESSCHHHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCC----EEEEEECCChHHHHHHHHH
Confidence 5689999999999 9999999999997 9999999999876 69999999 7899988874
No 375
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.47 E-value=1.9e-07 Score=75.30 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=51.2
Q ss_pred ccceeeEeCCCC--CC---CHHHHHHHHhhcCCceEEEEEeccC------CCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDK--KV---TQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~--~~---tee~L~~~F~~~~G~I~~v~i~~d~------~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
++++|+|.|+-. .+ -+++|++.|++| |.|.+|.|+++. +.++|++||+|.+.++|.+|++.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~-G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~ 90 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA 90 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT-SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH
Confidence 678999999842 22 368999999997 999999999874 24679999999999999999874
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=3.6e-07 Score=81.10 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=56.5
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 189 QVTEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 189 ~vtee~L~~~F~~~G~V~~v~i~~d~~------~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
.-.+++|++.|++||.|.++.++++.. .++|++||+|.+.++|.+|+. |+|..+.||.|.+.+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 345689999999999999999985543 258999999999999999998 9999999999999885
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.26 E-value=1.8e-06 Score=69.04 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=48.1
Q ss_pred ccceeeEeCCCCCCC----------HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVT----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~t----------ee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+++.|.|.|+=..-. +++|++.|++| |.|.+|.|.++. ++|+|||+|.+.++|.+|++.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf-G~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH-GGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT-TCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc-CCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHH
Confidence 567888988843222 35789999997 999999997764 588999999999999999874
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=9.7e-06 Score=63.68 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=66.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEecCCCCCceEEEEEEcCHHHHHHHH-HhCCeEecccce
Q 019691 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTC-----GQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPV 247 (337)
Q Consensus 174 ~~~~~rtVfV~nLp~~vtee~L~~~F~~~-----G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al-~l~g~~l~g~~I 247 (337)
.....|+|-+-|||..+++..|+.+...+ |.+..+.+..|.. -|+|+|.+...|-+|. .|+|..|.|++|
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 34567899999999999999999999999 9999999988864 7999999999998886 699999999999
Q ss_pred EEcc
Q 019691 248 RVLP 251 (337)
Q Consensus 248 ~V~~ 251 (337)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3.4e-05 Score=59.95 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhc-----CCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecccceEEc
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLT-----CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~-----~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g~~I~V~ 250 (337)
...++|.|.|||+.+.++.|.-+|+. -|+|..++... +-|+|+|.+.+.|++.|+...+.|.+.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 35679999999999999999999985 35888887755 36999999999999999887788999999998
Q ss_pred cCCCCCCCCCCCCCCCCccccccccceeeEeCCCCCCC
Q 019691 251 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288 (337)
Q Consensus 251 ~sk~~~~~~~~~~~p~~~~~~~~~~~~l~V~NLp~~~t 288 (337)
+. .+ ...++|.+.+|++.++
T Consensus 80 P~-----------~~-------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PA-----------PP-------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EC-----------CC-------CCCCCCCCCSCCCCCC
T ss_pred cC-----------CC-------CCcceEeeecCCCCCC
Confidence 73 11 2457889999998765
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=0.0002 Score=54.54 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=43.0
Q ss_pred cceeeEeCCC----CCCCH----HHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNID----KKVTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp----~~~te----e~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..||.|.-.+ ..+-. .+|.+.|.+| |+|..+++..+. +||+|.+.++|.+||++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~m 68 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASF-GEVILIRFVEDK------MWVTFLEGSSALNVLSL 68 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT-CCEEEEEECSSS------EEEEESSHHHHHHGGGG
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhC-CCeEEEEEecCC------EEEEECChHHHHHHHhc
Confidence 3667766555 23333 6788999997 999999999974 79999999999999974
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.24 E-value=0.00036 Score=61.49 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHhhcCCceEEEEEeccC------CCCceEEEEEeCChHHHHHHHHh
Q 019691 286 KVTQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 286 ~~tee~L~~~F~~~~G~I~~v~i~~d~------~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.-.+++|++.|++| |.|.++.|+++. ++++|++||+|.+.++|.+|++.
T Consensus 140 ~e~~~dl~~e~~~~-G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~ 194 (222)
T 3dxb_A 140 DDLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA 194 (222)
T ss_dssp TTHHHHHHHHHTTT-SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH
Confidence 34668999999997 999999998652 26899999999999999999874
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.21 E-value=0.00056 Score=52.41 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=45.0
Q ss_pred ccceeeEeCCCCC-----CCH----HHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKK-----VTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~-----~te----e~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
+..||.|.-++.. +-. .+|.+.|.+| |+|..+++..+. +||+|.+.++|.+||++
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vilvr~v~d~------~fVtF~d~~sAl~AI~l 77 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY-GTIVLVRINQGQ------MLVTFADSHSALSVLDV 77 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH-SCCSEEEEETTE------EEEECSCSHHHHHHHHG
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC-CCEEEEEEecCc------EEEEEcChHHHHHHHhc
Confidence 4478888877643 222 5688899997 999999999984 89999999999999985
No 383
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0016 Score=52.01 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhCCeEecc-cceEEccC
Q 019691 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF-YPVRVLPS 252 (337)
Q Consensus 176 ~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~g~~l~g-~~I~V~~s 252 (337)
...+-|.|-+.|+.. ...|...|++||.|.+..... ...+-.|.|.+..+|++||..||..+.+ ..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346789999999885 667888999999999887622 2358999999999999999999999975 66777763
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.002 Score=50.19 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCCCC-c----HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEc
Q 019691 177 IRRTVYVSDIDQQV-T----EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (337)
Q Consensus 177 ~~rtVfV~nLp~~v-t----ee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~ 250 (337)
...+|+|.||+..+ . .+.++.+|..|+++......+.- +-..|.|.++++|.+|-. |++..+.|++|+|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 35689999999755 2 25788999999999887776554 357899999999999986 99999999999999
Q ss_pred cCC
Q 019691 251 PSK 253 (337)
Q Consensus 251 ~sk 253 (337)
.+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 875
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.92 E-value=0.0033 Score=48.25 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=47.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH
Q 019691 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (337)
Q Consensus 175 ~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~ 236 (337)
+...+.++| ++|+.+...||.++|+.||.| .|+++.|. .|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 444566777 999999999999999999965 57777774 69999999999999997
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.90 E-value=0.0047 Score=47.02 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEEcCHHHHHHHHH-hCCeEeccc
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~----~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~ 245 (337)
..|.|+.||+.+|++++.+.+.....+.....+..+.+ .-.-|||.|.+.+++....+ ++|..|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 46899999999999999999998888776666544432 24679999999999999987 999887653
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0095 Score=46.20 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=48.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhh----cCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFES----VCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~----~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...+|.|.|||+.++++.|.-+|++ -.|.|..+.... . -|+|+|.+.+.|++.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~----~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C----GGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T----EEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C----cEEEEEcChHHHHHHhcC
Confidence 4689999999999999999999997 246899988766 2 699999999999998864
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.51 E-value=0.0042 Score=47.71 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=43.0
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++| ++|+.+...||.++|++| |. ..|+.+.|+. |||.|.+++.|..||++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f-gg-v~I~WidDTs-----Alvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF-GN-IQISWIDDTS-----AFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT-CS-CCCEEEETTE-----EEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc-CC-EEEEEEcCCe-----EEEEecCHHHHHHHHHh
Confidence 345556 999999999999999998 73 3455556644 99999999999999884
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.012 Score=46.22 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhc----CCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESV----CGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~----~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
..++|-+-|||..+++..|+.+.+++ -|.|..+.+..|.+ =|+|+|.+...|-+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKas 79 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKML 79 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHH
Confidence 45899999999999999999999984 28899999999876 5999999999888764
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.13 E-value=0.0069 Score=46.60 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=43.0
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
..++| ++|+.+...||.++|++| | =..|..+.|+. |||.|.+++.|..||++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f-g-gv~I~WidDTs-----Alvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF-G-NIQISWIDDTS-----AFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS-E-EEEEEEEETTE-----EEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc-C-CEEEEEEcCCe-----EEEEecCHHHHHHHHHh
Confidence 44555 999999999999999998 7 44566666644 99999999999999984
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.92 E-value=0.004 Score=61.10 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=48.9
Q ss_pred cccCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHHhC
Q 019691 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 238 (337)
Q Consensus 171 ~~~~~~~~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~l~ 238 (337)
..+.....|+|+|. .|..+++.+|.++|++||.|.++.+..+.. -||.|+|.+.+++..++...
T Consensus 46 ~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 46 NERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSC
T ss_pred HHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhcc
Confidence 44455677899998 799999999999999999999998887654 79999999999999887543
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.81 E-value=0.0094 Score=45.86 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=43.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH
Q 019691 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (337)
Q Consensus 180 tVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~ 236 (337)
.++| ++|+.+...||.++|+.||. ..|+++-|. .|||.|.+++.|..|+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 4555 99999999999999999995 467887774 69999999999999997
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.35 E-value=0.008 Score=58.96 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.9
Q ss_pred ccccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhc
Q 019691 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 272 ~~~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
....+.|+|. .|..+++.+|.++|++| |.|.++.+..+.+ -||.|||.+.+++..+++.+
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~-g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF-GPINNHFFYESFG---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG-SCCCCEEEECSSS---EEEEEECC---CCHHHHSSC
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc-CCcceEEEEccCC---eEEEEEeCCHHHHHHHHhcc
Confidence 3456899998 79999999999999998 9999998877655 49999999999999887654
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.09 E-value=0.025 Score=43.41 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEEcCHHHHHHHHH-hCCeEeccc
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~----~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~ 245 (337)
+-.|.|+.||+.+|++++.+.+...-.+.....+..+.+ .-.-|||.|.+.++.....+ ++|..|.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 457999999999999998888776544432222222211 13578999999999999987 999887653
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.08 E-value=0.092 Score=39.79 Aligned_cols=56 Identities=9% Similarity=0.225 Sum_probs=44.3
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC----CCCceEEEEEeCChHHHHHH
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~----~~~~g~aFVeF~~~e~A~~A 332 (337)
.+|.|++||+.+||+++.+.++.. ..+....+...+ ...-..|||.|.+.+++..-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f 61 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM-PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILF 61 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC-CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc-ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHH
Confidence 478899999999999999999987 777777665542 12345799999999887654
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.84 E-value=0.022 Score=46.12 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=54.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEec--------------CCC-CCceEEEEEEcCHHHHHHHHHhCCeEe
Q 019691 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICG--------------DPN-SVLRFAFVEFTDEEGARAALSLAGTML 242 (337)
Q Consensus 179 rtVfV~nLp~~vtee~L~~~F~~~G~V~~v-~i~~--------------d~~-~~kg~aFV~F~~~e~A~~Al~l~g~~l 242 (337)
.-|.|-+.|+... ..+.+.|++||.|.+- .+.+ -+. +...+-.|.|.++.+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 4678888877655 4567789999998762 1111 000 123577999999999999999999999
Q ss_pred cccceEEccC
Q 019691 243 GFYPVRVLPS 252 (337)
Q Consensus 243 ~g~~I~V~~s 252 (337)
.|.-|-|.+.
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9988888774
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.80 E-value=0.19 Score=39.96 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=45.3
Q ss_pred ccceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 274 ~~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...-|.|.+.|+.. ...|...|+++ |+|........ ..+-.|.|.+..+|++||..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~-G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY-GNILKHVMSNT----GNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT-SCEEEEEECSS----SSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh-CcEEEeccCCC----CCeEEEEeCCHHHHHHHHHh
Confidence 46889999999885 56777888885 99999876322 33899999999999999963
No 398
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.52 E-value=0.32 Score=37.65 Aligned_cols=55 Identities=7% Similarity=0.150 Sum_probs=44.0
Q ss_pred ccceeeEeCCCCCC-C----HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHH
Q 019691 274 CSRTIYCTNIDKKV-T----QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWH 333 (337)
Q Consensus 274 ~~~~l~V~NLp~~~-t----ee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Al 333 (337)
..++|+|+||+..+ . ++.++++|..| +++.....++.-. -..|.|.+.++|.+|-
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR 63 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYFKSFK----RVRINFSNPLSAADAR 63 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEETTTT----EEEEECSSTTHHHHHH
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeecCcce----EEEEEeCChHHHHHHH
Confidence 45889999998744 2 36789999997 8888888777644 4789999999999884
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.30 E-value=0.23 Score=38.02 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=40.2
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC----CCCceEEEEEeCChHHHHHH
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~----~~~~g~aFVeF~~~e~A~~A 332 (337)
+-+|.|+.||+.+||+++.+.++.. -++....+...+ ...-..|||.|.+.++...-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F 69 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLF 69 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHH
Confidence 4689999999999999999888775 444443333221 11223699999999887653
No 400
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=84.76 E-value=0.24 Score=27.40 Aligned_cols=14 Identities=64% Similarity=0.885 Sum_probs=12.1
Q ss_pred hccCccceeecCCC
Q 019691 96 SKLNPMAAEFVPPS 109 (337)
Q Consensus 96 ~~~~p~a~~~vp~~ 109 (337)
|.|||-|+||+|--
T Consensus 4 s~lnp~akef~pgv 17 (26)
T 1jgn_B 4 SNLNPNAKEFVPGV 17 (26)
T ss_dssp CSSCTTCCCCCTTS
T ss_pred ccCCcchhhcCCCc
Confidence 67999999999954
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.39 E-value=2.5 Score=41.70 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hC
Q 019691 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (337)
Q Consensus 178 ~rtVfV~nLp~~vtee~L~~~F~~~G~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~ 238 (337)
...++|+ +|..+...+|.++|+.||.| +|+++.+. .|||.|.+.+.|..++. +.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 4466666 99999999999999999964 66666553 69999999999999997 54
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.89 E-value=5.1 Score=39.49 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=41.0
Q ss_pred cceeeEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCChHHHHHHHHh
Q 019691 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 275 ~~~l~V~NLp~~~tee~L~~~F~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
...++++ +|..+...+|.++|+.| |. ..|..+.+. .|||.|.+.+.|..+|..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f-g~-v~V~widdt-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF-GN-IQISWIDDT-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG-CC-CEEEECSSS-----EEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc-CC-EEEEEEcCC-----eEEEEECCHHHHHHHHHH
Confidence 3455565 99999999999999997 74 355544442 599999999999988864
No 403
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=74.86 E-value=1.5 Score=35.33 Aligned_cols=58 Identities=7% Similarity=0.125 Sum_probs=40.2
Q ss_pred ceeeEeCCCCCCCHHHHHHHHhhcCCceEE-EEEecc--------------CC-CCceEEEEEeCChHHHHHHHHh
Q 019691 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGD--------------YQ-HSTRIAFVEFAMVSEPFSWHAC 335 (337)
Q Consensus 276 ~~l~V~NLp~~~tee~L~~~F~~~~G~I~~-v~i~~d--------------~~-~~~g~aFVeF~~~e~A~~Ale~ 335 (337)
.-|.|-+.|+..+ ..+.+.|+++ |.|.. +...++ +. ....|-.|+|++..+|.+||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~-G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEF-GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGG-SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhh-ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 5677888876554 5667788887 98876 322210 00 1245889999999999999974
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.53 E-value=36 Score=25.08 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=41.5
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.-|+--++...+..+|++.++.+|+ +|..|..+..+. ...-|+|.+....+|...
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~KKA~V~L~~~~~a~dv 79 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEKKAYVKLKPEYSASEV 79 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCEEEEEEECTTSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-CceEEEEEcCCCCcHHHH
Confidence 4555567789999999999999878 788887665432 233699999988777653
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.73 E-value=36 Score=28.47 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=43.2
Q ss_pred CEEEEcCCCC-C--------CcHHHHHHHh--hcCCCeeEEEEecCCCCCceEEEEEEc-CHHHHHHHHHhC
Q 019691 179 RTVYVSDIDQ-Q--------VTEEQLATLF--LTCGQVVDCRICGDPNSVLRFAFVEFT-DEEGARAALSLA 238 (337)
Q Consensus 179 rtVfV~nLp~-~--------vtee~L~~~F--~~~G~V~~v~i~~d~~~~kg~aFV~F~-~~e~A~~Al~l~ 238 (337)
-++.|-|+|. . ....+|++.| ..|.++. |+.+..+.++.|+|.|.|. +...-..|+.|.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 3577778886 2 3447899977 8998864 6667777778899999999 566666777543
No 406
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=45.41 E-value=48 Score=24.31 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=40.9
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.-|+--++...+..+|++.++.+|| +|..|..+.... ...-|+|.+...++|...
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSEEEEEEECTTSCHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-CceEEEEEECCCCcHHHH
Confidence 4455667889999999999998777 788887665432 233699999887776543
No 407
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=39.22 E-value=11 Score=21.11 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.1
Q ss_pred HhccCccceeecCCCCC
Q 019691 95 LSKLNPMAAEFVPPSLA 111 (337)
Q Consensus 95 ~~~~~p~a~~~vp~~~~ 111 (337)
.|+|.+.|.||+|....
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 47899999999997654
No 408
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=35.68 E-value=75 Score=25.63 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=41.2
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.-|+--++...+..+|++.++.+|+ .|..|..+...+. .--|||.+....+|...
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g-~KKAyV~L~~~~daldv 135 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNG-TKKAYVRLTADYDALDI 135 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTS-CEEEEEEECTTCCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC-ceEEEEEeCCCCcHHHH
Confidence 4566667889999999999998877 7888876655432 33699999887777653
No 409
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=35.42 E-value=28 Score=19.59 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=18.6
Q ss_pred CccchhhHHHHHHHHhccCccce
Q 019691 81 ESFKDCEMRDLVDMLSKLNPMAA 103 (337)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~p~a~ 103 (337)
++.+|.=.+++.++|++|-|-++
T Consensus 2 g~~~kkIgQkIkdFf~~l~prte 24 (26)
T 2fcg_F 2 GKEFKRIVQRIKDFLRNLVPRTE 24 (26)
T ss_dssp CCSHHHHHHHHHHHHHHSCCSCC
T ss_pred cHHHHHHHHHHHHHHHhcCcccc
Confidence 35677778899999999998765
No 410
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=34.47 E-value=82 Score=25.65 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=41.0
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.-|+--++...+..+|++.++.+|+ .|..|..+...+. ..-|||.+....+|...
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g-~KKAyV~La~~~dAldv 143 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITG-NKKAYIRLAADSDSLTL 143 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-CEEEEEEECSSSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC-cEEEEEEcCCCCcHHHH
Confidence 4555567888999999999998877 7888876655432 33699999887777653
No 411
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.32 E-value=86 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=41.3
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
..|+--++...+..+|++.++.+|| .|..|..+.-.+. .--|||.+....+|...
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~-~KKAiVtL~~g~~aid~ 149 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDG-EKKAYVRLAPDYDALDV 149 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSS-CEEEEEEECTTSCHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCC-ceEEEEEECCCCcHHHH
Confidence 4556667889999999999998777 7888877665442 33699999887766544
No 412
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.76 E-value=89 Score=25.50 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=40.8
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCChHHHHHH
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSW 332 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~A 332 (337)
.-|+--++...+..+|++.++.+|+ .|..|..+.... ..--|||.+....+|...
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~KKAyV~L~~~~daldv 145 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-GKKKAYVKLTPDYDALDV 145 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-SSEEEEEEECTTSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-CceEEEEEcCCCCcHHHH
Confidence 4555667788999999999988877 788887665432 233699999988777653
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.50 E-value=98 Score=25.77 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=33.7
Q ss_pred ceeeEeCCCC---------CCCHHHHHHHH--hhcCCceEEEEEeccCCCCceEEEEEeCChH
Q 019691 276 RTIYCTNIDK---------KVTQGDIKLFF--ESVCGEVQRLRLLGDYQHSTRIAFVEFAMVS 327 (337)
Q Consensus 276 ~~l~V~NLp~---------~~tee~L~~~F--~~~~G~I~~v~i~~d~~~~~g~aFVeF~~~e 327 (337)
..+.|.|+|. ..+..+|++.| ..| ..+ .|+.+..+...+|+|.|+|...-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F-~p~-kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF-NPT-RVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC-CCS-EEEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCC-CCc-eeEecccCCCCceeEEEEecCCh
Confidence 4566677765 24557899977 787 444 45555655557889999998743
No 414
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=21.58 E-value=2e+02 Score=21.11 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=38.2
Q ss_pred eeEeCCCCCCCHHHHHHHHhhcCC----ceEEEEEeccCCCCceEEEEEeCChHHHHHHHHhc
Q 019691 278 IYCTNIDKKVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMVSEPFSWHACF 336 (337)
Q Consensus 278 l~V~NLp~~~tee~L~~~F~~~~G----~I~~v~i~~d~~~~~g~aFVeF~~~e~A~~Ale~s 336 (337)
+.+.-+|..++-++|.+.....|+ ....++...+.+ -+|.+.+.++-..||.+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHH
Confidence 556667889999998887776655 223344433334 479999999999998853
No 415
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.49 E-value=2e+02 Score=19.62 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=38.2
Q ss_pred EEEEc-CCCCCCcHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEEcCHHHHHHHHH-hCCeEecccceEEccC
Q 019691 180 TVYVS-DIDQQVTEEQLATLFLTCG-----QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (337)
Q Consensus 180 tVfV~-nLp~~vtee~L~~~F~~~G-----~V~~v~i~~d~~~~kg~aFV~F~~~e~A~~Al~-l~g~~l~g~~I~V~~s 252 (337)
+++|. +--..+...+|..++..-+ .|-.+.+.. .|.||+-... .+..++. |.+..+.|++++|..+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 45553 2224566677888776443 455566643 3788888754 4666666 8888899999988764
No 416
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.80 E-value=2.6e+02 Score=20.59 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=36.1
Q ss_pred eeeEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCC------------CceEEEEEeCCh
Q 019691 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQH------------STRIAFVEFAMV 326 (337)
Q Consensus 277 ~l~V~NLp~~~tee~L~~~F~~~~G-~I~~v~i~~d~~~------------~~g~aFVeF~~~ 326 (337)
..|+-.++...+..+|++.++.+|+ .|..|..+.-.++ ...-|+|.....
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~VtL~~g 84 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPG 84 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEEEECTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEEEcCCC
Confidence 5566667889999999999999888 7888766654321 222588888643
Done!