BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019692
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 137/248 (55%), Gaps = 27/248 (10%)
Query: 65 PRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG------------------ 105
PR+VRVNTLK D V +Q F Q G
Sbjct: 11 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 70
Query: 106 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 165
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 71 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 130
Query: 166 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 225
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG
Sbjct: 131 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 190
Query: 226 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 285
+ +L+ T P RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q EN
Sbjct: 191 SRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEEN 242
Query: 286 EDVIKSVL 293
EDV++ L
Sbjct: 243 EDVVRDAL 250
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 124/252 (49%), Gaps = 16/252 (6%)
Query: 68 VRVNTLKMDVDSAVLELGKQFV-VQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQGKAS 126
+RVNTLK +V+ + EL + V V + + G + +Q +AS
Sbjct: 189 IRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEAS 248
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
++ + L PKPG V+D +APG KT HLA LMK KGKI A +++K R++RLKD +K G
Sbjct: 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG 308
Query: 187 AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
++ L D P+ +LLD C+ SGT + P D
Sbjct: 309 IKIVKPLVKDARKA-PEIIGEEVADKVLLDAPCTSSGTIGKN-----PELRWRLRED--- 359
Query: 247 MERLNKLSAFQKKALRHA--LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGF-QL 303
++N++S Q++ L A L PG R++Y+TCSI + ENE I+ L + F L
Sbjct: 360 --KINEMSQLQRELLESAARLVKPG-GRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPL 416
Query: 304 ATPFPNGTAEAS 315
+P+ G E +
Sbjct: 417 KSPYDPGFLEGT 428
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 18/247 (7%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKX-XXXXXXXXXXXGCDL 108
E + + + + P PR RVNTLK+ V V L K+ F ++ +
Sbjct: 30 ERAIRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 89
Query: 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 168
P + G +++Q +S AL PKPG V D +APG KT +LA L + G I A
Sbjct: 90 TSTPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAF 149
Query: 169 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
++++ R+R + + G N+ + H L++ + E ILLD C+GSGT
Sbjct: 150 DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELN---VEFDKILLDAPCTGSGTI--- 203
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENE 286
H P T D + Q + L L PG +VYSTCS+ ENE
Sbjct: 204 --HKNPERKWNRTXDDIKF-----CQGLQXRLLEKGLEVLKPG-GILVYSTCSLEPEENE 255
Query: 287 DVIKSVL 293
VI+ L
Sbjct: 256 FVIQWAL 262
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 64 KPRYVRVNTLKMDVDSAVLEL-GKQFVVQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQ 122
K +++RVNTLK++ + L K V++K + P + G Q
Sbjct: 9 KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68
Query: 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182
+S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK I
Sbjct: 69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI 128
Query: 183 KLSGAANIEVLHGD---FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239
G N +++ D + + K+ + + ILLD CSG+ + +
Sbjct: 129 NRMGVLNTIIINADMRKYKDYLLKNEIFFD--KILLDAPCSGN----------IIKDKNR 176
Query: 240 HTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYSTCSIHQVENEDVIKSVL 293
+ ++ E + S QK+ + + + +VYSTCS+ ENE+VIK +L
Sbjct: 177 NVSE----EDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYIL 227
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 170
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 171 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 230
+ +RVR L + ++ GA + V L Y +LLD CSG G R D
Sbjct: 135 DGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMF--RKD 189
Query: 231 HLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV-VYSTCSIHQVENEDVI 289
H P+ +R+ ++ QK L A G V VYSTC+ ENE V+
Sbjct: 190 REAARHWG-----PSAPKRMAEV---QKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV 241
Query: 290 KSVL 293
L
Sbjct: 242 AHFL 245
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 170
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 171 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 230
+ +RVR L + ++ GA + V L Y +LLD CSG G R D
Sbjct: 135 DGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMF--RKD 189
Query: 231 HLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV-VYSTCSIHQVENEDVI 289
H P+ +R+ ++ QK L A G V VYSTC+ ENE V+
Sbjct: 190 REAARHWG-----PSAPKRMAEV---QKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV 241
Query: 290 KSVL 293
L
Sbjct: 242 AHFL 245
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 86/184 (46%), Gaps = 14/184 (7%)
Query: 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 170
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEV 134
Query: 171 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 230
+ +RVR L + ++ GA + V L Y +LLD CSG G R D
Sbjct: 135 DGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTY--FHRVLLDAPCSGEGXF--RKD 189
Query: 231 HLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV-VYSTCSIHQVENEDVI 289
H P+ +R ++ QK L A G V VYSTC+ ENE V+
Sbjct: 190 REAARHWG-----PSAPKRXAEV---QKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV 241
Query: 290 KSVL 293
L
Sbjct: 242 AHFL 245
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 118/266 (44%), Gaps = 34/266 (12%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQF------VVQKXXXXXXXXXX 102
S +D +A Q P R +RVNTLK+ V + L+L + +
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 103 XXGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGNKTVHLAA 157
L ++G ++Q +S + AAL AP+ +V D +APG+KT ++A
Sbjct: 81 EDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISA 137
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
+G I+A E + RV+ L I G +N+ + H D P AILLD
Sbjct: 138 RXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP--EXFDAILLDA 195
Query: 218 SCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 276
CSG G + D L S S T+ E ++ SAF HAL G +VYS
Sbjct: 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPGGT--LVYS 245
Query: 277 TCSIHQVENEDV---IKSVLPIAMSF 299
TC+++Q ENE V +K P A+ F
Sbjct: 246 TCTLNQEENEAVCLWLKETYPDAVEF 271
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 115 VNGCVFL--------QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
VNG FL Q ++ +V A A KPG KVLD C+APG K+ LAA KGKG +V
Sbjct: 75 VNGKSFLHQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLV 134
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
E+ +R + L + I+ G +N V + L P + + I++D CSG G
Sbjct: 135 TNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD--RIVVDAPCSGEGX-- 190
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAF-----QKKALRHALS-FPGVERVVYSTCSI 280
DP ++ + S Q++ L A+ +++YSTC+
Sbjct: 191 -------------FRKDPNAIKEWTEESPLYCQKRQQEILSSAIKXLKNKGQLIYSTCTF 237
Query: 281 HQVENEDVI 289
ENE++I
Sbjct: 238 APEENEEII 246
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 108 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 167
+H P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + ++VA
Sbjct: 217 VHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVA 275
Query: 168 CELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
+++++R+ R+ D +K G A ++ G + + + + ILLD CS +G
Sbjct: 276 VDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR---ILLDAPCSATGVIR 332
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
D ++ L +L + A+ L G +VY+TCS+ EN
Sbjct: 333 RHPD-------IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT--LVYATCSVLPEENS 383
Query: 287 DVIKSVL 293
IK+ L
Sbjct: 384 LQIKAFL 390
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 36/192 (18%)
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRL 178
+L AS + AL +PG VLD C+APG KT LA L G + + A +L+ R+ RL
Sbjct: 132 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQTGCCRNLAANDLSPSRIARL 189
Query: 179 KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG--SGTAAERLDHLLPSH 236
+ ++LH ++ + +D ++VR D G G +R+ +P
Sbjct: 190 Q-----------KILHS-YVPEEIRDG--NQVRVTSWDGRKWGELEGDTYDRVLVDVPCT 235
Query: 237 ASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-------------RVVYSTCSIHQV 283
H+ E N + +K R L V+ VVYSTCS+ +
Sbjct: 236 TDRHSLHEEE----NNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 291
Query: 284 ENEDVIKSVLPI 295
+NE V++ + +
Sbjct: 292 QNEYVVQGAIEL 303
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 36/192 (18%)
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRL 178
+L AS + AL +PG VLD C+APG KT LA L G + + A +L+ R+ RL
Sbjct: 131 YLXDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQTGCCRNLAANDLSPSRIARL 188
Query: 179 KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG--SGTAAERLDHLLPSH 236
+ ++LH ++ + +D ++VR D G G +R+ +P
Sbjct: 189 Q-----------KILHS-YVPEEIRDG--NQVRVTSWDGRKWGELEGDTYDRVLVDVPCT 234
Query: 237 ASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-------------RVVYSTCSIHQV 283
H+ E N + +K R L V+ VVYSTCS+ +
Sbjct: 235 TDRHSLHEEE----NNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290
Query: 284 ENEDVIKSVLPI 295
+NE V++ + +
Sbjct: 291 QNEYVVQGAIEL 302
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
KPG V+D +APG + ++ + GKG+I+AC+L + + ++ L G
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL-----------LPMDPIVGVDFLQG 69
Query: 196 DFLN 199
DF +
Sbjct: 70 DFRD 73
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197
G + LD S G +HLA G ++VA + + E +RR ++ +L+G N+ VL +
Sbjct: 210 GERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA 266
Query: 198 LNLDPKDPAYSE-VRAILLDPSCSGSG 223
+L + E ++LDP G
Sbjct: 267 FDLLRRLEKEGERFDLVVLDPPAFAKG 293
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197
G + LD S G +HLA G ++VA + + E +RR ++ +L+G N+ VL +
Sbjct: 210 GERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA 266
Query: 198 LNLDPKDPAYSE-VRAILLDPSCSGSG 223
+L + E ++LDP G
Sbjct: 267 FDLLRRLEKEGERFDLVVLDPPAFAKG 293
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 113 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE--- 169
L+ G K +M+ + + PG VL+A S G ++ L+ + +G++++ E
Sbjct: 81 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 140
Query: 170 ----LNKERVRRLKDTIKLSGAA----NIEVLHGDFLNL--DPKDPAYSEVRAILLDPSC 219
L K+ + +D+ KLS N++ +H D D K + V +L+P
Sbjct: 141 DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHV 200
Query: 220 S 220
+
Sbjct: 201 T 201
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 170
+PLI+N S + AAL +P VL+ GN TV L L K K K+VACEL
Sbjct: 13 NPLIIN---------SIIDKAAL--RPTDVVLEVGPGTGNMTVKL--LEKAK-KVVACEL 58
Query: 171 NKERVRRLKDTIKLSG-AANIEVLHGDFLNLD 201
+ V L ++ + A+ ++VL GD L D
Sbjct: 59 DPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
K G VLD + G +L+ ++ KGK+ A ++ +E V + + G N+EVL
Sbjct: 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS 95
Query: 196 D 196
+
Sbjct: 96 E 96
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSGAANIEVLH 194
+PG +L+ GN + ++ + GKG + E +++ +++ D + + N+
Sbjct: 109 RPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEFYDIGNVRTSR 168
Query: 195 GDFLNLDPKDPAYSEVRAILLDP 217
D + D Y V A + DP
Sbjct: 169 SDIADF-ISDQXYDAVIADIPDP 190
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
PG KVL+A G +TV LA +I + +++ E + + ++ + +G N++ L +
Sbjct: 37 PGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95
Query: 197 FLNLDPKDPAYSEV 210
+L +D ++ +
Sbjct: 96 IFSLPFEDSSFDHI 109
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 121 LQGKASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 176
L+G + ++A AL +PG +VLD + G + A+ + + A +L+++R+
Sbjct: 183 LRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLG 242
Query: 177 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
++ SG + I L D +L P+ + EV IL +P
Sbjct: 243 LAREAALASGLSWIRFLRADARHL-PR--FFPEVDRILANP 280
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
M+ L KPG KVL+ + G A ++ G +V+ E E + + T++ G
Sbjct: 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG 126
Query: 187 AANIEVLHGD----FLNLDPKDPAYS 208
N+ V+ GD + L P D Y+
Sbjct: 127 YDNVIVIVGDGTLGYEPLAPYDRIYT 152
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKG-----KIVACELNKERVRRLK-----DTIKLS 185
KPG ++LD S G T +K KG +IV E E VRR K D +
Sbjct: 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML 142
Query: 186 GAANIEVLHGDFLNLDPKDPAYSEV 210
+ + ++ GD P + Y+ +
Sbjct: 143 DSGQLLIVEGDGRKGYPPNAPYNAI 167
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
K ++++ A PG +++A G T+ LA ++ +G++V+ E+ ++ + + IK
Sbjct: 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139
Query: 184 LSG 186
+G
Sbjct: 140 WAG 142
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
K ++++ A PG +++A G T+ LA ++ +G++V+ E+ ++ + + IK
Sbjct: 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139
Query: 184 LSG 186
+G
Sbjct: 140 WAG 142
>pdb|2L7N|A Chain A, Nmr Structure Of The B Domain Of Talin
Length = 168
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLP-----SHASGHTADPTEMERLNKLSAFQK 258
DPA V+AI+LD TA++ LD ASGH DP +RL +++
Sbjct: 105 DPA---VQAIVLD-------TASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVT 154
Query: 259 KALRHALS-FPG 269
+AL +S PG
Sbjct: 155 QALNRCVSCLPG 166
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1U3T|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
pdb|1U3T|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
Length = 374
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM----KGKGKIVACELNK 172
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAIMGCKAAGAARIIAVDINK 226
Query: 173 ERVRRLKD 180
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDY|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM----KGKGKIVACELNK 172
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 173 ERVRRLKD 180
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDZ|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM----KGKGKIVACELNK 172
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 173 ERVRRLKD 180
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDX|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|3HUD|A Chain A, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|3HUD|B Chain B, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1U3U|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3U|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3V|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
pdb|1U3V|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
Length = 374
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM----KGKGKIVACELNK 172
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 173 ERVRRLKD 180
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
pdb|1HTB|B Chain B, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
Length = 374
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM----KGKGKIVACELNK 172
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 173 ERVRRLKD 180
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
VL+ GN TV L L K K++ +++ + +K G N+EV GD
Sbjct: 46 VLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGD 98
>pdb|3RE1|A Chain A, Crystal Structure Of Uroporphyrinogen Iii Synthase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3RE1|B Chain B, Crystal Structure Of Uroporphyrinogen Iii Synthase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 269
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 233 LPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269
LP HA G E+ERLN L + H L G
Sbjct: 177 LPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAG 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,346,993
Number of Sequences: 62578
Number of extensions: 349179
Number of successful extensions: 1028
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 43
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)