BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019692
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 162/287 (56%), Gaps = 33/287 (11%)
Query: 30 HKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYVRVNTLKMDVDSAVLEL--- 84
H+ ++ LA+L V V EDL+ + P PR+VRVNTLK D V
Sbjct: 98 HQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQ 157
Query: 85 ------------------GKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS 126
GK F++ D L+P+LL+ P DLH HPL G + LQ +AS
Sbjct: 158 GFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTDLHEHPLYRAGHLILQDRAS 215
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
+ A L P PG V+DAC+APGNKT HLAAL+K +GKI A +L+ +R+ + + +G
Sbjct: 216 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG 275
Query: 187 AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
+ E+ DFL + P DP Y EV ILLDPSCSGSG + +L+ T P
Sbjct: 276 VSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLE-----EPGAGTPSPV- 329
Query: 247 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENEDV++ L
Sbjct: 330 --RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDAL 374
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 169/305 (55%), Gaps = 30/305 (9%)
Query: 26 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPD--VPKPRYVRVNTLKMDVDSAVLE 83
L H+ ++ LA+L V V EDL+ P PR+VRVNTLK + A+
Sbjct: 94 LLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRVNTLKTRPEDAIDY 153
Query: 84 LGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLHVHPLIVNGCVFLQGK 124
+Q F Q + + DL L+ P DLH HPL G + LQ K
Sbjct: 154 FKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDK 213
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
AS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI A + + +R+ + +
Sbjct: 214 ASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVAR 273
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADP 244
+G + E+ DFL + P D YS+V+ ILLDPSCSGSG + +L+ H G P
Sbjct: 274 AGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEE----HGEG---TP 326
Query: 245 TEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304
++ ERL L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENEDV++ L S F+LA
Sbjct: 327 SK-ERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENEDVVQEALQ-HNSGTFRLA 384
Query: 305 TPFPN 309
P
Sbjct: 385 PVLPT 389
>sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3
Length = 460
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 140/247 (56%), Gaps = 24/247 (9%)
Query: 62 VPKPRYVRVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLH 109
V PR++R+NT+K +D S++ ELG +F + DD V +L+ + P +
Sbjct: 128 VSLPRWLRINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIV 185
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVA 167
+ L G V +Q KAS AA LA G ++D C+APGNKT HLAA K I A
Sbjct: 186 ENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFA 244
Query: 168 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 227
E + +RV+ L+ + +SGA N+ + H DF DPK Y V ILLDPSCSGSG +
Sbjct: 245 FERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS- 303
Query: 228 RLDHLLPSHASGHTADPTE-MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
R D+LL G+ D TE ERL L +FQ L+HAL FP V YSTCS+H++ENE
Sbjct: 304 RQDYLL-----GNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENE 358
Query: 287 DVIKSVL 293
V+ VL
Sbjct: 359 QVVCEVL 365
>sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1
Length = 490
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 159/315 (50%), Gaps = 44/315 (13%)
Query: 19 PVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDL-MALYQTPDVPKPRYVRVNTLKM-- 75
P+ D +++ K + + +L ++ KV+ + +L ++ + D+P R++R+N LK
Sbjct: 109 PIKD---YVLKFKSPLHSEMVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHP 165
Query: 76 --DVDSAVLELGKQFVVQ-------------KDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
+ + + EL K+F ++ D+ +P+L + P + H L +G +
Sbjct: 166 NGETEPVLAELRKKFTLKVDKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKII 225
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKER 174
+Q +AS A L P P V+D+CSAPGNKT H A+ + +I A E + ER
Sbjct: 226 IQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPER 285
Query: 175 VRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL---- 229
+ L+ IK++G + NI V GDF L + Y +V ++DPSCSGSG +
Sbjct: 286 AKVLQKMIKIAGCSPNISVNVGDFTKLATPE-KYKDVTCFIVDPSCSGSGIFGRKFFDSF 344
Query: 230 -----------DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 278
++P A RL KLS+FQ + ++HA+SFP +++VYSTC
Sbjct: 345 NRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMVKHAMSFPAAKKIVYSTC 404
Query: 279 SIHQVENEDVIKSVL 293
SIH ENE V+ +L
Sbjct: 405 SIHAEENERVVIDLL 419
>sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5
SV=2
Length = 315
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHL 155
+P+LL+ P DLH HPL G + LQ +AS + A L P+ KT HL
Sbjct: 1 MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHL 60
Query: 156 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215
AAL+K +GKI A +L+ R+ + + +G + E+ DFL + P DP Y EV +LL
Sbjct: 61 AALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLL 120
Query: 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 275
DPSCSGSG + +L+ T P RL+ L+ FQ++AL HAL+FP ++R+VY
Sbjct: 121 DPSCSGSGMPSRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVY 172
Query: 276 STCSIHQVENEDVIKSVL 293
S CS+ Q ENED+++ L
Sbjct: 173 SMCSLCQEENEDMVQDAL 190
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 22/238 (9%)
Query: 62 VPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
+P + +RVN +K D + ++ + + V+K DL D + L G H NG V
Sbjct: 176 IPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVS 234
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+Q ++S +VA AL PK VLDAC+APG K+ H+A LMK KG + + +L+K +V+ +K+
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAILLDPSCSGSGTAAERLDHLLPSHAS 238
G + ++H + ++ + + IL+D CSG G + D
Sbjct: 295 AADRLG---LTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPD-------M 344
Query: 239 GHTADPTEMERLNKLSAFQKKALRHALSFPGVER---VVYSTCSIHQVENEDVIKSVL 293
+T P + RL ++ Q LR P V++ +VYSTC++ + EN++VI + +
Sbjct: 345 KYTKKPDDSARLAEI---QLSILREIA--PLVKKGGTLVYSTCTMDRTENDEVIHAFI 397
>sp|Q3KNT7|NSN5B_HUMAN Putative NOL1/NOP2/Sun domain family member 5B OS=Homo sapiens
GN=NSUN5P1 PE=5 SV=1
Length = 163
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPT 245
G + E+ DFL + P DP Y EV +LLDPSCSGSG + +L+ T P
Sbjct: 9 GVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLED-----PGAGTPSPV 63
Query: 246 EMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENED++ L
Sbjct: 64 ---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDAL 108
>sp|Q6D4C8|RSMF_ERWCT Ribosomal RNA small subunit methyltransferase F OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmF PE=3 SV=1
Length = 484
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 128/272 (47%), Gaps = 46/272 (16%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 108
S+ED +A Q P R +RVNTLK+ VD A L+L + + Q + + P C
Sbjct: 26 SMEDFIAACQRP---LRRSIRVNTLKISVD-AFLQLAQPYGWQLEPI--------PWCQE 73
Query: 109 HVHPLI--------------VNGCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNK 151
L ++G ++Q +S + A+AL PG +LD +APG+K
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG-TILDVAAAPGSK 132
Query: 152 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211
T +AA + +G IVA E + RV+ L I G +N + H D P Y +
Sbjct: 133 TTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFD-- 190
Query: 212 AILLDPSCSGSGTAAERLDHLLPSHASGHT-ADPTEMERLNKLSAFQKKALRHALSFPGV 270
AILLD CSG G R D SH S + D +R LSAF HAL GV
Sbjct: 191 AILLDAPCSGEGVV--RKDPAAMSHWSQESITDIAATQRDLILSAF------HALKPGGV 242
Query: 271 ERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
++YSTC++++ EN+ V +++ P A F
Sbjct: 243 --MIYSTCTLNRQENQQVCRWLQAQFPDACEF 272
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 55/274 (20%)
Query: 63 PKPRYVRVNTLKMDVDSAVLE---LGKQF-----------VVQKDDLVPDLLILPPGCDL 108
P R +RVNTLK+ V V++ LG QF + + D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVSDFVMQMQPLGWQFDAVPWCETGFWLTRADESVP----------L 84
Query: 109 HVHPLIVNGCVFLQGKASSM--VAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKG 163
++G ++Q +ASSM V A A K +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 223
+VA E + R++ L I+ G N+ + H D P AILLD CSG G
Sbjct: 144 MLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLP--ETFDAILLDAPCSGEG 201
Query: 224 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSI 280
T + D L +E +++++A Q+ L HAL GV +VYSTC++
Sbjct: 202 TVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTL 249
Query: 281 HQVENEDVIKSVLPIAMSFG-----FQLATPFPN 309
Q EN+ V +S+L FG LA FPN
Sbjct: 250 SQQENQAVCQSLLE---KFGDALTLDSLADLFPN 280
>sp|A1SWV0|RSMF_PSYIN Ribosomal RNA small subunit methyltransferase F OS=Psychromonas
ingrahamii (strain 37) GN=rsmF PE=3 SV=1
Length = 481
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 140/313 (44%), Gaps = 62/313 (19%)
Query: 45 NKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPP 104
N++K IED +A+ Q P R +RVNTLK+ V+ + +Q V L P
Sbjct: 21 NQLK-IEDFIAVCQRP---LRRAIRVNTLKISVEKFQIRAQEQGWV---------LTAIP 67
Query: 105 GC------DLHVHPL-------IVNGCVFLQGKASSMVAAAL----APKPGWKVLDACSA 147
C +L P + G ++Q +S + AAL P VLDA +A
Sbjct: 68 WCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVLDAAAA 127
Query: 148 PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207
PG+KT +AA M G I+ E + R++ L I+ G N+ + H D P
Sbjct: 128 PGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFDARVFGKWLPGT 187
Query: 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD---PTEMERLNKLSAFQKKALRHA 264
+ AILLD CSG GT R D ++ S + + T+ E + LSAF HA
Sbjct: 188 FD--AILLDAPCSGEGTV--RKDKYAMNNWSQSSINEIASTQQELI--LSAF------HA 235
Query: 265 LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIY 324
L G+ ++YSTC++ EN+D+ F L FP E +FL +++
Sbjct: 236 LKEDGI--LIYSTCTLSHEENQDIC-----------FFLKDKFP----EHIEFLDLETLF 278
Query: 325 FEPIQWKTKKAFL 337
+ + +T + FL
Sbjct: 279 TDAKKTRTAEGFL 291
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 41/262 (15%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG-------------KQFVVQKDDL 95
+++D +A Q P R +RVNTLK+ VD+ + ++ + F +++DD
Sbjct: 26 AMDDFIAACQRP---LRRSIRVNTLKISVDAFLAQVAPYGWQLTPVPWCPEGFWIERDD- 81
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKT 152
D L L + H ++G ++Q +S + AAL P +V+D +APG+KT
Sbjct: 82 -EDALPLGSTAE---H---LSGQFYIQEASSMLPVAALFADGNTPA-RVMDVAAAPGSKT 133
Query: 153 VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212
+AALM+ +G I+A E + RV+ L I G N+ + H D P + A
Sbjct: 134 TQIAALMQNQGFILANEYSASRVKVLHANISRCGIHNVGLTHFDGRVFGAALP--EQFDA 191
Query: 213 ILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE 271
ILLD CSG G + D L S S T+ E ++ SAF HAL+ G
Sbjct: 192 ILLDAPCSGEGVVRKDPDALRNWSPQSDQEIAATQRELID--SAF------HALAPGGT- 242
Query: 272 RVVYSTCSIHQVENEDVIKSVL 293
+VYSTC++++ EN++ ++ +L
Sbjct: 243 -LVYSTCTLNREENQETVRWLL 263
>sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B OS=Shewanella
oneidensis (strain MR-1) GN=rsmB PE=3 SV=1
Length = 428
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 22/234 (9%)
Query: 65 PRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGK 124
P ++R N L D + L K + L D ++L D+ PL + G +Q
Sbjct: 168 PMWLRNNRLSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFLEGAASVQDG 227
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-K 183
A+ A LAP+ +LDAC+APG K+ HL L + K++A + + +R+ R++ + +
Sbjct: 228 AAQWAATLLAPQANELILDACAAPGGKSCHLLEL-EPSIKLIAVDFDAKRLERVQQNLDR 286
Query: 184 LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD--HLLPSHASGHT 241
LS A EV+HGD N+D + ILLD CS +G D L +H
Sbjct: 287 LSLKA--EVIHGDAANIDSWWQG-EQFDRILLDAPCSATGVIRRHPDIKWLRKNH----- 338
Query: 242 ADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
+ +L+ Q++ L H + PG ++Y+TCSI EN D I + L
Sbjct: 339 -------DIEELAELQRQILDHCWKWLKPG-GTLLYATCSILPQENRDQISAFL 384
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 28/257 (10%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP-------DLLI 101
S+ + + ++ ++P+P +R NTLK + EL + + + +L P L +
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLK----TQRRELAQALINRGVNLEPIGKWSKVGLQV 303
Query: 102 LPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG 161
+ P + G LQ +S + ALAP+P ++LD SAPG K ++AAL K
Sbjct: 304 FESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKN 363
Query: 162 KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 221
G I A + NK R + L I G N V + D + +LLD CSG
Sbjct: 364 TGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKF--PNEVIGGFDRVLLDAPCSG 421
Query: 222 SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVER-----VVYS 276
+G + D + ++ S D LS Q++ L A+ + +VYS
Sbjct: 422 TGVIYK--DQSVKTNKSERDFDT--------LSHLQRQLLLSAIDSVNADSKTGGFIVYS 471
Query: 277 TCSIHQVENEDVIKSVL 293
TCSI E+E VI+ L
Sbjct: 472 TCSITVDEDEAVIQYAL 488
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL 178
+FLQ S++VA L P+PG K+LD C+APG KT H AALM+ KG+++A + +V +L
Sbjct: 216 IFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKL 275
Query: 179 KDTIKLSGAANIEVLHGD---FLNLDPKD-----PAY--SEVRAILLDPSCSGSGTAAER 228
K L G +I D L LD D P + I+LD CSG G
Sbjct: 276 KQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDRIILDAPCSGMGQR--- 332
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENE 286
P+ A T ++ + Q+K L A+ PG +VYSTC+I ENE
Sbjct: 333 -----PNMACTWT-----LKEVTSYQPLQRKLLHVAVQLLKPG-GVLVYSTCTITLAENE 381
Query: 287 DVI 289
+ +
Sbjct: 382 EQV 384
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 129/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTASYGWTLTPIPWCEEGFWIERDD 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALCPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCRWLKETYPDAVEF 271
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDD 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 127/273 (46%), Gaps = 48/273 (17%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 95
S +D +A Q P R +RVNTLK V + + + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSVADFLRLTAPYGWTLTPIPWCEEGFWIERDD- 80
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 150
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 81 -EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGS 130
Query: 151 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210
KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 131 KTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFD- 189
Query: 211 RAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269
AILLD CSG G + D L S S T+ E ++ SAF HAL G
Sbjct: 190 -AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRSGG 240
Query: 270 VERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
+VYSTC++++ ENE V +K P A+ F
Sbjct: 241 T--LVYSTCTLNREENESVCLWLKETYPDAVEF 271
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 127/273 (46%), Gaps = 48/273 (17%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 95
S +D +A Q P R +RVNTLK V + + + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSVADFLRLTAPYGWTLTPIPWCEEGFWIERDD- 80
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 150
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 81 -EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGS 130
Query: 151 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210
KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 131 KTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFD- 189
Query: 211 RAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269
AILLD CSG G + D L S S T+ E ++ SAF HAL G
Sbjct: 190 -AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRSGG 240
Query: 270 VERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
+VYSTC++++ ENE V +K P A+ F
Sbjct: 241 T--LVYSTCTLNREENESVCLWLKETYPDAVEF 271
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 24/246 (9%)
Query: 53 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLEL-GKQFVVQKDDLVPDLLILPPGCDLHVH 111
+M +Y+ K +++RVNTLK++ + L K V++K L + +
Sbjct: 1 MMIVYKGE---KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGST 57
Query: 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 171
P + G Q +S + L P+ +LD C+APG KT HLA LMK KG IVA E++
Sbjct: 58 PEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEIS 117
Query: 172 KERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVRAILLDPSCSGSGTAAER 228
K R + LK I G N +++ D K+ + + ILLD CSG+
Sbjct: 118 KTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD--KILLDAPCSGN------ 169
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYSTCSIHQVENED 287
+ + + ++ E + S QK+ + + + +VYSTCS+ ENE+
Sbjct: 170 ----IIKDKNRNVSE----EDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEE 221
Query: 288 VIKSVL 293
VIK +L
Sbjct: 222 VIKYIL 227
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 128/279 (45%), Gaps = 39/279 (13%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDV-DSAVLELGKQFVVQKDDLVPDLLILPPGCD 107
S++D ++ P P +R+NTLK+ D L K + ++ D + D
Sbjct: 21 SMDDFISYSSKPLRPS---IRINTLKISSQDFIALMAPKGWTLEPIPWCQDGFWISLDSD 77
Query: 108 LHVHPLI--VNGCVFLQGKASSMVAAAL----APKPGWKVLDACSAPGNKTVHLAALMKG 161
+ + + + G ++Q +S + AL K +LD SAPG+KT +AA+M
Sbjct: 78 VQLGNTVEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDN 137
Query: 162 KGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKDPAYSEVRAILL 215
G ++A E + RV+ L + G +N + H G++L Y + AILL
Sbjct: 138 SGLLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYL--------YDQFDAILL 189
Query: 216 DPSCSGSGTAAERLDHL-LPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV 274
D CSG GT R D L L + + E ++ SAF L+ +V
Sbjct: 190 DAPCSGEGTI--RKDPLALNNWGLAENSAIAETQKALLESAF--------LALKTGGSLV 239
Query: 275 YSTCSIHQVENEDV---IKSVLPIAMSFGFQLATPFPNG 310
YSTC++ ++EN+DV ++S P A+ F LAT FP+
Sbjct: 240 YSTCALSKLENQDVCEHLRSTFPEAVEFE-SLATLFPDA 277
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 125/261 (47%), Gaps = 39/261 (14%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD---SAVLELGKQ----------FVVQKDDL 95
S +D +A Q P R +RVNTLK+ VD S V G Q F ++++D
Sbjct: 25 SFDDFIAACQRP---LRRSIRVNTLKISVDDFLSLVAPYGWQLAPVPWCAEGFWIERED- 80
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM--VAAALAP-KPGWKVLDACSAPGNKT 152
D L L + H ++G ++Q +ASSM VAA A + +V+D +APG+KT
Sbjct: 81 -DDALPLGSTAE---H---LSGLFYIQ-EASSMLPVAALFADNRQPERVMDVAAAPGSKT 132
Query: 153 VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212
+AA M G I+A E + RV+ L I G +N+ + H D P A
Sbjct: 133 TQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--ETFDA 190
Query: 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVER 272
ILLD CSG G + D L + + D +R SAF HAL G
Sbjct: 191 ILLDAPCSGEGVVRKDADA-LKNWSPESNLDIAATQRELIDSAF------HALRPGGT-- 241
Query: 273 VVYSTCSIHQVENEDVIKSVL 293
+VYSTC++++ EN+ VI+ +L
Sbjct: 242 LVYSTCTLNREENQSVIEWLL 262
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 135/288 (46%), Gaps = 50/288 (17%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 95
S +D +A Q P R +RVNTLK+ V + + + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISVADFLRLTAPYGWTLTPIPWCEEGFWIERDN- 80
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 150
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 81 -EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGS 130
Query: 151 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210
KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 131 KTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD- 189
Query: 211 RAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269
AILLD CSG G + D L S S T+ E ++ SAF HAL G
Sbjct: 190 -AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLGG 240
Query: 270 VERVVYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATPFPNGTAEA 314
+VYSTC++++ ENE V +K P A+ F L FP GT +A
Sbjct: 241 T--LVYSTCTLNREENEAVCLWLKETYPDAVEF-LPLGDLFP-GTNKA 284
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|A1S788|RSMF_SHEAM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rsmF PE=3
SV=1
Length = 467
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 114/232 (49%), Gaps = 28/232 (12%)
Query: 68 VRVNTLKMDVDS--AVLE-LGKQF--VVQKDD----LVPDLLILPPGCDLHVHPLIVNGC 118
+RVNTLK+ D+ A+LE G QF V +D VPD PG +L H G
Sbjct: 37 IRVNTLKITSDALRAILEPRGWQFEPVPWCEDGFWVTVPD--DCQPG-NLTEH---YQGL 90
Query: 119 VFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 176
++Q +S M AL +P +LD SAPG+KT LAALM +G I+A E + R +
Sbjct: 91 FYIQEASSMMPPCALFMDKEPRQLLLDVASAPGSKTTQLAALMHNQGLIIANEYSASRTK 150
Query: 177 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 236
L ++ G AN+ + D Y + AI LD CSG GT R D L
Sbjct: 151 ALHANLQRMGVANVAITQFDGRVFGAH--LYETLDAIQLDAPCSGEGTV--RKDPL---- 202
Query: 237 ASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 288
S P E+E + +L + AL GV +VYSTC++++ ENEDV
Sbjct: 203 -SLKNWCPDEIEAIAELQRDLIDSAFQALKPGGV--LVYSTCTLNRRENEDV 251
>sp|A8GDM6|RSMF_SERP5 Ribosomal RNA small subunit methyltransferase F OS=Serratia
proteamaculans (strain 568) GN=rsmF PE=3 SV=2
Length = 478
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDV-DSAVLELGKQFVVQKDDLVPDLLILPPGCD 107
S++D +A Q P R +RVNTLK+ V D L + ++ + + G +
Sbjct: 26 SMDDFIAACQRP---LRRSLRVNTLKISVTDFLTLVQDYDWRLEPIPWCAEGFWIERGDE 82
Query: 108 ---LHVHPLIVNGCVFLQGKASSMV------AAALAPKPGWKVLDACSAPGNKTVHLAAL 158
L ++G ++Q +ASSM+ A A AP +VLD +APG+KT +AAL
Sbjct: 83 ELRLGSAAEHLSGLFYIQ-EASSMLPVSALFAGAEAPS---RVLDVAAAPGSKTTQIAAL 138
Query: 159 MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218
M +G IVA E + RV+ L I G N+ + H D P AILLD
Sbjct: 139 MNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP--ESFDAILLDAP 196
Query: 219 CSGSGTAAERLDHLLPSHASGHTA-DPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 277
CSG G + D + TA T+ E ++ SAF HAL+ GV +VYST
Sbjct: 197 CSGEGVVRKDPDAMSNWSPESVTAIADTQRELID--SAF------HALAPGGV--MVYST 246
Query: 278 CSIHQVENEDVIKSVL 293
C+++ EN+ ++ +L
Sbjct: 247 CTLNAQENQQIVNGLL 262
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 129/270 (47%), Gaps = 49/270 (18%)
Query: 63 PKPRYVRVNTLKMDVDSAVLE---LGKQ-----------FVVQKDDLVPDLLILPPGCDL 108
P R +RVNTLK+ V + V LG Q ++ ++D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVAAFVARMQPLGWQLDPVPWCDTGFWLSREDESVP----------L 84
Query: 109 HVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK---VLDACSAPGNKTVHLAALMKGKG 163
++G ++Q +ASSM V A A + + +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 223
+VA E + R++ L ++ G N+ + H D P AILLD CSG G
Sbjct: 144 MLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLP--ETFDAILLDAPCSGEG 201
Query: 224 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSI 280
+ + D L +E +++++A Q+ L HAL GV +VYSTC++
Sbjct: 202 SVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTL 249
Query: 281 HQVENEDVIKSVL-PIAMSFGF-QLATPFP 308
EN+ V +S+L +F F LA FP
Sbjct: 250 SLQENQAVCQSLLDKFGAAFSFDSLADLFP 279
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 124/264 (46%), Gaps = 45/264 (17%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD---SAVLELGKQ----------FVVQKD-- 93
S +D +A Q P R +RVNTLK+ V S V G Q F +++D
Sbjct: 25 SFDDFIAACQRP---LRRSIRVNTLKISVADFLSLVAPYGWQLTPVPWCEEGFWIERDGD 81
Query: 94 DLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM--VAAALA--PKPGWKVLDACSAPG 149
D +P L ++G ++Q +ASSM VAA A P+P +V+D +APG
Sbjct: 82 DALP----------LGSTAEHLSGLFYIQ-EASSMLPVAALFADNPQPE-RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M G I+A E + RV+ L I G +N+ + H D P
Sbjct: 130 SKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--EA 187
Query: 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269
AILLD CSG G + D L + + D +R SAF HAL G
Sbjct: 188 FDAILLDAPCSGEGVVRKDAD-ALKNWSPESNLDIAATQRELIDSAF------HALRPGG 240
Query: 270 VERVVYSTCSIHQVENEDVIKSVL 293
+VYSTC++++ EN+ V++ +L
Sbjct: 241 T--LVYSTCTLNREENQSVVQWLL 262
>sp|C6DFU6|RSMF_PECCP Ribosomal RNA small subunit methyltransferase F OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmF PE=3
SV=1
Length = 484
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 44/271 (16%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 108
S++D +A Q P R +RVNTLK+ V+ A L L + + Q + + P C
Sbjct: 26 SMDDFIAACQRP---LRRSIRVNTLKISVE-AFLRLVQPYGWQLEPI--------PWCQE 73
Query: 109 HVHPLI--------------VNGCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKT 152
L ++G ++Q +S + +AL + VLD +APG+KT
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNEALETVLDVAAAPGSKT 133
Query: 153 VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212
+AA + KG IVA E + RV+ L I G +N + H D P Y + A
Sbjct: 134 TQIAARLDNKGAIVANEYSASRVKVLHANISRCGVSNTAMTHFDGRVFGAALPEYFD--A 191
Query: 213 ILLDPSCSGSGTAAERLDHLLPSHASGHT-ADPTEMERLNKLSAFQKKALRHALSFPGVE 271
ILLD CSG G R D SH S + + +R LSAF HAL GV
Sbjct: 192 ILLDAPCSGEGVV--RKDPAAMSHWSPESITEIAATQRDLILSAF------HALKPGGV- 242
Query: 272 RVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
++YSTC++++ EN+ V +++ P A F
Sbjct: 243 -MIYSTCTLNKQENQQVCHWLQAQFPDACEF 272
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 120/274 (43%), Gaps = 29/274 (10%)
Query: 50 IEDLMALYQTPDVPKPRYVRVNTLKM---DVDSAVLELGKQFVVQKDDLVPDLLILPPGC 106
+ +L+ + +VP+P +R NTLK D+ A++ G L++
Sbjct: 294 LSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSV 353
Query: 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
+ P + G LQG +S + ALAP+ ++LD C APG KT ++A LMK G I+
Sbjct: 354 PIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVIL 413
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A + N ER++ + + G N + H D PK +LLD CSG+G +
Sbjct: 414 ANDANAERLKSVVGNLHRLGVTNTIISHYDGRQF-PK--VVGGFDRVLLDAPCSGTGVIS 470
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL-SFPGVER----VVYSTCSIH 281
+ A D ++ R L QK+ L A+ S + +VY TCSI
Sbjct: 471 K-------DPAVKTNKDEKDILRCAHL---QKELLLSAIDSVNATSKTGGYLVYCTCSIT 520
Query: 282 QVENEDVIKSVL--------PIAMSFGFQLATPF 307
ENE V+ L P + FG + T F
Sbjct: 521 VEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF 554
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDD 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL +P+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNSPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCMWLKETYPDAVEF 271
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 269 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCMWLKETYPDAVEF 271
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 23/210 (10%)
Query: 115 VNGCVFLQGKASSMVAAALAPKP-----GWKVLDACSAPGNKTVHLAALMKGKGKIVACE 169
+ G ++Q +S + AL P+P +LD SAPG+KT LAA+M +G +VA E
Sbjct: 87 IQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNNQGLLVANE 146
Query: 170 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
+ RV+ L ++ GA+N+ + H D + AILLD C G GT +
Sbjct: 147 YSSSRVKVLHANVQRMGASNLALTHFDARVFGKY--LFESFDAILLDAPCGGEGTVRKDP 204
Query: 230 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA-LSFPGVERVVYSTCSIHQVENEDV 288
D L D +E+E +++ Q+ + A L+ +VYSTC++++ EN+DV
Sbjct: 205 DAL-------KHWDESEIE---AIASVQRDLIESAFLALKPGGSLVYSTCTLNRRENQDV 254
Query: 289 ---IKSVLPIAMSFGFQLATPFPNGTAEAS 315
+K+ A+ F LA FP G +AS
Sbjct: 255 CLHLKATYGDAVQFE-SLAGLFP-GAEKAS 282
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 121/260 (46%), Gaps = 47/260 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK V + L+L + F +++D
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDS 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAEH------LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M KG I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLG 239
Query: 269 GVERVVYSTCSIHQVENEDV 288
G +VYSTC++++ ENE V
Sbjct: 240 GT--LVYSTCTLNREENEAV 257
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 121/260 (46%), Gaps = 47/260 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK V + L+L + F +++D
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDS 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAEH------LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M KG I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLG 239
Query: 269 GVERVVYSTCSIHQVENEDV 288
G +VYSTC++++ ENE V
Sbjct: 240 GT--LVYSTCTLNREENEAV 257
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 121/260 (46%), Gaps = 47/260 (18%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 94
S +D +A Q P R +RVNTLK V + L+L + F +++D
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDS 80
Query: 95 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 149
D L L + ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAEH------LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 150 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209
+KT +AA M KG I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 210 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLG 239
Query: 269 GVERVVYSTCSIHQVENEDV 288
G +VYSTC++++ ENE V
Sbjct: 240 GT--LVYSTCTLNREENEAV 257
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 129/280 (46%), Gaps = 41/280 (14%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAV-LELGKQFVVQKDDLVPDLLILPPGCD 107
+++D ++ P P +R+NTLK+ D V L K + + D + +
Sbjct: 21 TMDDFISYSSKPLRPS---IRINTLKISSDEFVTLMAAKGWTLDPIPWCSDGFWVALDNE 77
Query: 108 LHVHPLI--VNGCVFLQGKASSMVA-----AALAPKPGWKVLDACSAPGNKTVHLAALMK 160
+ + I + G ++Q +ASSM+ L + +LD SAPG+KT +A+LM
Sbjct: 78 IQLGNTIEHIQGLFYIQ-EASSMLPPTALFDGLDNSSEYTILDMASAPGSKTTQMASLMD 136
Query: 161 GKGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKDPAYSEVRAIL 214
KG +VA E + RV+ L ++ G N + H G++L Y + AIL
Sbjct: 137 NKGLLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYL--------YHQFDAIL 188
Query: 215 LDPSCSGSGTAAERLDHL-LPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV 273
LD CSG GT R D L L + + A E ++ SAF L+ +
Sbjct: 189 LDAPCSGEGTI--RKDPLALRNWSLEENASIIETQKALIESAF--------LALKTGGSL 238
Query: 274 VYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATPFPNG 310
VYSTC++ + EN++V + S P A+ F L+ FP+
Sbjct: 239 VYSTCALSRSENQEVCEHLMSCFPQAVEFQ-SLSELFPDA 277
>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmF PE=3 SV=1
Length = 479
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 121/269 (44%), Gaps = 40/269 (14%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 95
S +D +A Q P R +RVNTLK+ V + V + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISVTDFLALTAPYGWSLTPVPWCEEGFWIERDDE 81
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTV 153
LP G ++G ++Q +S + AAL + +++D +APG+KT
Sbjct: 82 ES----LPLGSTAEH----LSGLFYIQEASSMLPVAALFAEGNTPERIMDVAAAPGSKTT 133
Query: 154 HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213
+AA M +G I+A E + RV+ L I G +N+ + H D P AI
Sbjct: 134 QIAARMNNQGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--ETFDAI 191
Query: 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV 273
LLD CSG G + D L + + D +R SAF HAL G +
Sbjct: 192 LLDAPCSGEGVVRKDPD-ALKNWSVESNLDIAATQRELIDSAF------HALRPGGT--L 242
Query: 274 VYSTCSIHQVENEDV---IKSVLPIAMSF 299
VYSTC++++ ENE V +K P A+ F
Sbjct: 243 VYSTCTLNREENESVCLWLKETYPEAVEF 271
>sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransferase F OS=Enterobacter sp.
(strain 638) GN=rsmF PE=3 SV=1
Length = 480
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 127/268 (47%), Gaps = 40/268 (14%)
Query: 63 PKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDLVPDLLILPPGCDLH 109
P R +RVNTLK+ V+ + V + F ++++D D L L +
Sbjct: 36 PLRRSIRVNTLKISVEDFLALVSPYRWQLTPVPWCAEGFWIERED--EDALPLGSTAE-- 91
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVA 167
H ++G ++Q +S + AL + +V+D +APG+KT +AA M +G I+A
Sbjct: 92 -H---LSGLFYIQEASSMLPVTALFAEDNQPERVMDVAAAPGSKTTQIAARMGNRGVILA 147
Query: 168 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 227
E + RV+ L I G +N+ + H D P AILLD CSG G +
Sbjct: 148 NEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--ESFDAILLDAPCSGEGVVRK 205
Query: 228 RLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
D L S AS T+ E ++ SAF HAL G+ +VYSTC++++ ENE
Sbjct: 206 DPDALKNWSVASNLEIAATQRELID--SAF------HALRPGGM--LVYSTCTLNRDENE 255
Query: 287 DV---IKSVLPIAMSFGFQLATPFPNGT 311
V +K P A+ F L + FP+ T
Sbjct: 256 SVCLWLKEQYPQAVEF-LPLDSLFPSAT 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,471,951
Number of Sequences: 539616
Number of extensions: 5102153
Number of successful extensions: 14359
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 13591
Number of HSP's gapped (non-prelim): 520
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)