Query 019692
Match_columns 337
No_of_seqs 345 out of 2902
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:47:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0144 Sun tRNA and rRNA cyto 100.0 3.6E-58 7.7E-63 439.1 29.9 290 28-337 52-348 (355)
2 PRK11933 yebU rRNA (cytosine-C 100.0 1.2E-57 2.6E-62 447.0 30.1 289 29-337 3-301 (470)
3 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 9.6E-56 2.1E-60 410.7 15.3 269 53-337 1-279 (283)
4 PRK14903 16S rRNA methyltransf 100.0 2.5E-52 5.4E-57 408.9 28.0 308 7-337 110-424 (431)
5 PRK14901 16S rRNA methyltransf 100.0 1.3E-51 2.7E-56 405.3 30.0 278 27-337 146-427 (434)
6 TIGR00563 rsmB ribosomal RNA s 100.0 3.6E-50 7.9E-55 394.2 29.8 304 7-337 108-420 (426)
7 TIGR00446 nop2p NOL1/NOP2/sun 100.0 4.1E-50 9E-55 370.3 25.5 254 68-337 1-259 (264)
8 KOG1122 tRNA and rRNA cytosine 100.0 3.9E-50 8.4E-55 375.7 21.3 271 52-337 153-435 (460)
9 PRK14902 16S rRNA methyltransf 100.0 4.4E-48 9.4E-53 381.5 31.7 290 26-337 145-437 (444)
10 PRK10901 16S rRNA methyltransf 100.0 1.5E-47 3.3E-52 375.6 31.1 299 8-337 114-421 (427)
11 PRK14904 16S rRNA methyltransf 100.0 6.1E-46 1.3E-50 366.0 30.5 286 27-337 148-437 (445)
12 KOG2360 Proliferation-associat 100.0 8.8E-41 1.9E-45 310.0 18.9 303 21-337 90-407 (413)
13 KOG2198 tRNA cytosine-5-methyl 100.0 3.4E-36 7.3E-41 279.7 13.3 237 47-295 39-314 (375)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 4.5E-16 9.7E-21 151.0 13.4 155 111-293 197-357 (396)
15 COG1092 Predicted SAM-dependen 99.6 8.3E-16 1.8E-20 147.6 9.1 147 112-286 195-345 (393)
16 COG2265 TrmA SAM-dependent met 99.6 8.2E-15 1.8E-19 143.2 11.8 130 130-303 286-415 (432)
17 COG2519 GCD14 tRNA(1-methylade 99.6 6.8E-14 1.5E-18 125.3 13.8 143 113-303 70-215 (256)
18 PRK03522 rumB 23S rRNA methylu 99.6 2.5E-14 5.4E-19 135.4 11.6 87 132-223 168-254 (315)
19 PRK11783 rlmL 23S rRNA m(2)G24 99.5 3.5E-14 7.6E-19 147.5 12.9 147 111-285 515-664 (702)
20 PF10672 Methyltrans_SAM: S-ad 99.5 4.4E-15 9.5E-20 137.5 4.9 144 111-285 100-246 (286)
21 TIGR01177 conserved hypothetic 99.5 1.3E-13 2.7E-18 131.4 14.9 125 128-281 173-298 (329)
22 COG2242 CobL Precorrin-6B meth 99.5 4.4E-13 9.6E-18 115.3 14.9 137 122-304 19-157 (187)
23 PF05958 tRNA_U5-meth_tr: tRNA 99.5 6.3E-14 1.4E-18 134.4 10.0 90 130-223 190-292 (352)
24 COG2263 Predicted RNA methylas 99.5 5E-13 1.1E-17 114.6 14.2 129 121-294 27-157 (198)
25 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.7E-13 3.7E-18 135.6 12.5 89 131-222 291-380 (443)
26 COG2226 UbiE Methylase involve 99.5 2.6E-13 5.7E-18 122.3 12.4 122 126-285 40-162 (238)
27 PF05175 MTS: Methyltransferas 99.5 1.9E-13 4.1E-18 118.0 10.9 121 123-275 17-138 (170)
28 PF08704 GCD14: tRNA methyltra 99.5 2.3E-13 4.9E-18 123.7 11.7 140 121-304 24-167 (247)
29 TIGR00479 rumA 23S rRNA (uraci 99.5 3E-13 6.6E-18 133.4 13.6 89 131-222 286-375 (431)
30 TIGR00080 pimt protein-L-isoas 99.5 6.9E-13 1.5E-17 118.8 14.2 100 117-219 57-156 (215)
31 PF12847 Methyltransf_18: Meth 99.5 5.5E-13 1.2E-17 106.3 11.4 110 137-278 1-112 (112)
32 PRK14967 putative methyltransf 99.5 1.2E-12 2.5E-17 118.0 14.7 142 117-280 14-162 (223)
33 TIGR02085 meth_trns_rumB 23S r 99.5 3.7E-13 8.1E-18 130.2 12.1 85 133-222 229-313 (374)
34 PRK00377 cbiT cobalt-precorrin 99.5 1.5E-12 3.2E-17 115.1 14.4 130 124-293 27-158 (198)
35 PF13659 Methyltransf_26: Meth 99.5 6.9E-14 1.5E-18 112.5 5.0 114 138-278 1-116 (117)
36 TIGR00537 hemK_rel_arch HemK-r 99.4 2.3E-12 4.9E-17 112.1 14.5 157 122-304 4-161 (179)
37 COG4123 Predicted O-methyltran 99.4 1.8E-12 3.9E-17 117.0 12.8 144 125-293 32-182 (248)
38 PTZ00146 fibrillarin; Provisio 99.4 3.3E-12 7.1E-17 118.1 14.7 91 126-218 115-211 (293)
39 TIGR03704 PrmC_rel_meth putati 99.4 2.6E-12 5.6E-17 117.8 13.8 126 138-278 87-217 (251)
40 PF01209 Ubie_methyltran: ubiE 99.4 6.4E-13 1.4E-17 120.3 9.4 122 128-286 38-160 (233)
41 PRK13942 protein-L-isoaspartat 99.4 4.3E-12 9.3E-17 113.5 14.1 98 117-217 56-153 (212)
42 PRK05031 tRNA (uracil-5-)-meth 99.4 1.1E-12 2.4E-17 126.4 10.6 82 138-222 207-301 (362)
43 PF13847 Methyltransf_31: Meth 99.4 1.8E-12 3.9E-17 109.6 9.7 120 136-290 2-122 (152)
44 TIGR02143 trmA_only tRNA (urac 99.4 1.8E-12 3.8E-17 124.5 10.8 82 138-222 198-292 (353)
45 PRK04266 fibrillarin; Provisio 99.4 9.4E-12 2E-16 112.2 14.8 83 133-218 68-150 (226)
46 PRK07402 precorrin-6B methylas 99.4 8.7E-12 1.9E-16 110.0 14.3 147 117-305 20-167 (196)
47 COG1041 Predicted DNA modifica 99.4 2E-12 4.3E-17 121.2 10.1 153 124-316 184-338 (347)
48 TIGR03533 L3_gln_methyl protei 99.4 9.2E-12 2E-16 116.2 14.5 127 135-277 119-251 (284)
49 TIGR00138 gidB 16S rRNA methyl 99.4 1.4E-11 2.9E-16 107.6 14.5 124 137-305 42-166 (181)
50 PRK08287 cobalt-precorrin-6Y C 99.4 1.1E-11 2.5E-16 108.4 13.5 131 120-294 14-145 (187)
51 PRK10909 rsmD 16S rRNA m(2)G96 99.4 7.3E-12 1.6E-16 110.7 11.9 80 136-219 52-131 (199)
52 PRK13944 protein-L-isoaspartat 99.4 2.1E-11 4.7E-16 108.4 14.9 90 126-218 61-151 (205)
53 PRK09328 N5-glutamine S-adenos 99.3 1.2E-11 2.7E-16 114.4 12.8 128 134-276 105-237 (275)
54 TIGR03534 RF_mod_PrmC protein- 99.3 6.8E-11 1.5E-15 107.8 17.3 125 137-276 87-216 (251)
55 PF01135 PCMT: Protein-L-isoas 99.3 6.6E-12 1.4E-16 111.7 10.3 101 117-220 52-152 (209)
56 TIGR02469 CbiT precorrin-6Y C5 99.3 5E-11 1.1E-15 96.3 14.2 110 129-276 11-121 (124)
57 PRK11805 N5-glutamine S-adenos 99.3 3.5E-11 7.5E-16 113.4 15.0 123 138-275 134-261 (307)
58 COG2518 Pcm Protein-L-isoaspar 99.3 1.9E-11 4.2E-16 107.3 12.1 98 116-219 51-148 (209)
59 TIGR02752 MenG_heptapren 2-hep 99.3 4E-11 8.6E-16 108.2 14.4 87 127-216 35-121 (231)
60 PRK04338 N(2),N(2)-dimethylgua 99.3 1.1E-11 2.4E-16 120.0 10.9 112 128-279 47-159 (382)
61 PRK00121 trmB tRNA (guanine-N( 99.3 4E-11 8.7E-16 106.4 13.1 136 137-304 40-177 (202)
62 COG2890 HemK Methylase of poly 99.3 3.7E-11 8.1E-16 111.7 12.8 161 115-293 86-251 (280)
63 PRK00107 gidB 16S rRNA methylt 99.3 6.3E-11 1.4E-15 103.8 13.4 103 136-279 44-147 (187)
64 PRK00312 pcm protein-L-isoaspa 99.3 9.5E-11 2.1E-15 104.6 14.6 97 117-219 58-154 (212)
65 PF01170 UPF0020: Putative RNA 99.3 7E-11 1.5E-15 102.9 13.2 127 125-279 16-151 (179)
66 PRK14966 unknown domain/N5-glu 99.3 2.1E-10 4.5E-15 111.0 16.6 143 119-275 232-379 (423)
67 COG2813 RsmC 16S RNA G1207 met 99.3 9.8E-11 2.1E-15 108.0 13.6 127 122-281 143-270 (300)
68 PLN02233 ubiquinone biosynthes 99.3 1.3E-10 2.8E-15 107.2 14.3 117 128-279 64-184 (261)
69 PRK15001 SAM-dependent 23S rib 99.2 1.6E-10 3.6E-15 111.3 15.2 123 123-277 214-340 (378)
70 TIGR00536 hemK_fam HemK family 99.2 2.3E-10 5E-15 106.8 15.8 127 138-279 115-246 (284)
71 PRK09489 rsmC 16S ribosomal RN 99.2 1E-10 2.3E-15 111.7 13.6 135 122-292 181-316 (342)
72 PRK14968 putative methyltransf 99.2 2.7E-10 5.9E-15 99.0 15.1 155 126-304 12-169 (188)
73 PRK11873 arsM arsenite S-adeno 99.2 2.2E-10 4.8E-15 106.1 15.0 110 133-277 73-183 (272)
74 PRK13943 protein-L-isoaspartat 99.2 1.3E-10 2.8E-15 110.0 13.4 87 128-217 71-157 (322)
75 KOG2187 tRNA uracil-5-methyltr 99.2 2.2E-11 4.8E-16 118.3 8.4 117 130-283 376-495 (534)
76 TIGR00308 TRM1 tRNA(guanine-26 99.2 4.5E-11 9.7E-16 115.2 10.3 103 139-279 46-148 (374)
77 PLN02781 Probable caffeoyl-CoA 99.2 9.6E-11 2.1E-15 106.3 11.4 95 124-218 55-153 (234)
78 PF09445 Methyltransf_15: RNA 99.2 2.1E-11 4.5E-16 103.8 6.0 84 139-225 1-85 (163)
79 TIGR00091 tRNA (guanine-N(7)-) 99.2 7.6E-11 1.7E-15 103.9 9.7 138 137-305 16-155 (194)
80 KOG1540 Ubiquinone biosynthesi 99.2 1.9E-10 4.1E-15 102.9 12.0 143 128-310 91-241 (296)
81 PLN02476 O-methyltransferase 99.2 1.2E-10 2.6E-15 107.5 11.0 101 118-218 99-203 (278)
82 COG4122 Predicted O-methyltran 99.2 1.5E-10 3.2E-15 103.1 10.8 124 123-282 45-170 (219)
83 PLN02244 tocopherol O-methyltr 99.1 6.8E-10 1.5E-14 106.2 13.9 106 136-278 117-224 (340)
84 TIGR00438 rrmJ cell division p 99.1 7.9E-10 1.7E-14 96.8 12.8 113 132-276 27-145 (188)
85 KOG2915 tRNA(1-methyladenosine 99.1 8.1E-10 1.8E-14 99.6 11.9 93 125-218 93-186 (314)
86 PRK11207 tellurite resistance 99.1 1.2E-09 2.5E-14 96.7 12.3 83 126-215 19-101 (197)
87 PRK11188 rrmJ 23S rRNA methylt 99.1 1.5E-09 3.2E-14 96.9 13.0 106 135-275 49-163 (209)
88 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.1E-09 2.3E-14 105.4 12.4 123 133-283 118-241 (390)
89 COG0742 N6-adenine-specific me 99.1 9.6E-10 2.1E-14 95.2 10.6 83 136-220 42-125 (187)
90 PRK00050 16S rRNA m(4)C1402 me 99.1 3.5E-10 7.6E-15 105.4 7.8 92 129-222 11-103 (296)
91 PF02475 Met_10: Met-10+ like- 99.1 4.4E-10 9.5E-15 99.2 7.9 81 135-220 99-180 (200)
92 COG2264 PrmA Ribosomal protein 99.1 2.9E-09 6.4E-14 98.7 13.5 135 124-305 147-285 (300)
93 PHA03412 putative methyltransf 99.1 1.5E-09 3.2E-14 97.6 11.1 129 137-294 49-191 (241)
94 TIGR00477 tehB tellurite resis 99.0 1.5E-09 3.3E-14 95.7 10.9 84 127-218 20-103 (195)
95 PHA03411 putative methyltransf 99.0 6.6E-09 1.4E-13 95.4 15.0 137 133-305 60-211 (279)
96 PRK01544 bifunctional N5-gluta 99.0 1.9E-09 4.1E-14 108.3 12.3 125 137-275 138-267 (506)
97 TIGR00095 RNA methyltransferas 99.0 5.6E-10 1.2E-14 98.0 7.3 82 137-220 49-132 (189)
98 PRK00517 prmA ribosomal protei 99.0 8.9E-09 1.9E-13 94.4 15.3 117 135-305 117-235 (250)
99 smart00650 rADc Ribosomal RNA 99.0 1.7E-09 3.7E-14 93.1 10.0 83 129-219 5-87 (169)
100 PF03602 Cons_hypoth95: Conser 99.0 3.2E-10 7E-15 99.0 5.0 82 137-220 42-125 (183)
101 TIGR00406 prmA ribosomal prote 99.0 8.2E-09 1.8E-13 96.6 14.9 124 125-293 145-272 (288)
102 PF01596 Methyltransf_3: O-met 99.0 2.2E-10 4.7E-15 101.7 3.9 92 127-218 35-130 (205)
103 PRK15451 tRNA cmo(5)U34 methyl 99.0 5.4E-09 1.2E-13 95.6 12.5 109 135-278 54-165 (247)
104 PRK15068 tRNA mo(5)U34 methylt 99.0 4.3E-08 9.2E-13 93.1 19.0 111 130-278 115-227 (322)
105 COG2227 UbiG 2-polyprenyl-3-me 99.0 1.1E-09 2.4E-14 97.7 7.2 105 136-279 58-163 (243)
106 PRK01683 trans-aconitate 2-met 99.0 1.5E-08 3.2E-13 93.0 14.7 88 121-218 15-102 (258)
107 PRK10258 biotin biosynthesis p 99.0 3.3E-09 7.2E-14 97.0 10.3 114 121-277 26-140 (251)
108 PRK08317 hypothetical protein; 99.0 1.9E-08 4E-13 90.4 14.9 114 130-279 12-126 (241)
109 PRK11036 putative S-adenosyl-L 99.0 4.1E-09 8.8E-14 96.8 10.6 76 136-216 43-119 (255)
110 PRK14103 trans-aconitate 2-met 99.0 6E-09 1.3E-13 95.7 11.3 78 129-218 21-98 (255)
111 TIGR00452 methyltransferase, p 98.9 3E-08 6.4E-13 93.6 16.0 115 132-284 116-232 (314)
112 COG2520 Predicted methyltransf 98.9 4.6E-09 9.9E-14 99.3 10.5 105 109-218 151-265 (341)
113 PTZ00098 phosphoethanolamine N 98.9 1.2E-08 2.6E-13 94.3 12.9 127 114-277 28-156 (263)
114 PTZ00338 dimethyladenosine tra 98.9 5.7E-09 1.2E-13 97.7 10.7 94 121-222 20-114 (294)
115 COG2230 Cfa Cyclopropane fatty 98.9 5.9E-09 1.3E-13 96.0 10.3 118 124-279 59-178 (283)
116 PRK00216 ubiE ubiquinone/menaq 98.9 2.9E-08 6.4E-13 89.4 14.3 85 128-215 42-127 (239)
117 PLN02672 methionine S-methyltr 98.9 1.4E-08 3.1E-13 108.6 13.9 171 117-294 94-292 (1082)
118 PLN02396 hexaprenyldihydroxybe 98.9 7.3E-09 1.6E-13 98.1 10.4 75 135-215 129-204 (322)
119 PLN02589 caffeoyl-CoA O-methyl 98.9 9E-09 1.9E-13 93.9 10.1 96 123-218 65-165 (247)
120 COG0293 FtsJ 23S rRNA methylas 98.9 9.8E-09 2.1E-13 90.2 9.6 141 135-314 43-189 (205)
121 PF06325 PrmA: Ribosomal prote 98.9 9.8E-09 2.1E-13 95.9 10.1 130 125-305 147-280 (295)
122 PRK10742 putative methyltransf 98.9 2.5E-08 5.4E-13 90.1 12.2 90 126-220 75-175 (250)
123 PLN03075 nicotianamine synthas 98.9 3.3E-08 7.2E-13 91.9 13.3 107 137-277 123-233 (296)
124 PRK14896 ksgA 16S ribosomal RN 98.9 1.2E-08 2.5E-13 94.0 10.0 90 121-220 13-102 (258)
125 PF13649 Methyltransf_25: Meth 98.9 3.9E-09 8.5E-14 82.8 5.7 71 141-215 1-73 (101)
126 PF01269 Fibrillarin: Fibrilla 98.9 3.4E-08 7.5E-13 87.4 12.2 143 126-305 56-209 (229)
127 cd02440 AdoMet_MTases S-adenos 98.9 2.2E-08 4.7E-13 76.6 9.7 102 140-276 1-103 (107)
128 PLN02336 phosphoethanolamine N 98.8 5.5E-08 1.2E-12 97.2 14.9 113 129-279 258-371 (475)
129 PRK04457 spermidine synthase; 98.8 3.6E-08 7.8E-13 91.0 12.4 114 135-279 64-179 (262)
130 PRK12335 tellurite resistance 98.8 4.3E-08 9.2E-13 91.7 12.8 74 136-217 119-192 (287)
131 TIGR00740 methyltransferase, p 98.8 4E-08 8.6E-13 89.3 12.3 76 135-215 51-128 (239)
132 PF02353 CMAS: Mycolic acid cy 98.8 1.3E-08 2.9E-13 94.3 8.7 82 126-215 51-133 (273)
133 KOG2671 Putative RNA methylase 98.8 6.9E-09 1.5E-13 96.3 5.9 184 124-320 195-395 (421)
134 PRK00274 ksgA 16S ribosomal RN 98.8 1.8E-08 4E-13 93.5 8.8 88 125-221 30-117 (272)
135 PRK11705 cyclopropane fatty ac 98.8 4.8E-08 1E-12 94.9 12.0 78 127-215 157-234 (383)
136 KOG3420 Predicted RNA methylas 98.8 3.1E-09 6.8E-14 87.3 3.1 77 136-218 47-123 (185)
137 PF03848 TehB: Tellurite resis 98.8 6.9E-08 1.5E-12 84.5 11.1 78 130-215 23-100 (192)
138 PF02384 N6_Mtase: N-6 DNA Met 98.8 3.5E-08 7.5E-13 93.2 9.7 108 115-223 24-139 (311)
139 KOG2904 Predicted methyltransf 98.8 4.2E-08 9.2E-13 88.7 9.4 145 137-294 148-300 (328)
140 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 1.6E-07 3.4E-12 83.7 13.2 82 129-215 31-112 (223)
141 TIGR02716 C20_methyl_CrtF C-20 98.7 3.8E-07 8.2E-12 86.0 15.3 123 126-285 138-262 (306)
142 TIGR02072 BioC biotin biosynth 98.7 9E-08 2E-12 86.1 10.0 90 121-218 15-107 (240)
143 COG0116 Predicted N6-adenine-s 98.7 3E-07 6.5E-12 87.8 13.7 143 108-277 156-344 (381)
144 PRK06922 hypothetical protein; 98.7 2.8E-07 6.1E-12 93.5 14.0 85 131-218 412-496 (677)
145 PRK11727 23S rRNA mA1618 methy 98.7 8.7E-08 1.9E-12 90.5 9.6 86 137-223 114-203 (321)
146 KOG1271 Methyltransferases [Ge 98.7 1.8E-07 3.9E-12 80.0 10.4 72 139-214 69-141 (227)
147 PLN02490 MPBQ/MSBQ methyltrans 98.7 2.5E-07 5.5E-12 88.1 12.6 74 136-216 112-185 (340)
148 TIGR02021 BchM-ChlM magnesium 98.7 1.6E-07 3.5E-12 84.1 10.7 72 135-215 53-125 (219)
149 smart00828 PKS_MT Methyltransf 98.7 3.2E-07 6.9E-12 82.3 12.5 102 139-277 1-104 (224)
150 COG1889 NOP1 Fibrillarin-like 98.7 4.5E-07 9.8E-12 78.8 12.6 142 126-305 59-211 (231)
151 PRK05134 bifunctional 3-demeth 98.6 3E-07 6.5E-12 83.0 11.9 114 128-279 39-153 (233)
152 PRK00811 spermidine synthase; 98.6 3.5E-07 7.6E-12 85.4 12.1 79 137-218 76-159 (283)
153 TIGR03587 Pse_Me-ase pseudamin 98.6 1.7E-07 3.6E-12 83.4 9.1 72 134-215 40-111 (204)
154 COG4106 Tam Trans-aconitate me 98.6 1.2E-07 2.6E-12 83.1 7.7 86 122-218 16-101 (257)
155 PRK03612 spermidine synthase; 98.6 1.9E-07 4.2E-12 94.3 10.4 135 136-302 296-438 (521)
156 KOG1596 Fibrillarin and relate 98.6 1.5E-07 3.3E-12 83.6 8.4 132 126-294 139-281 (317)
157 PF08241 Methyltransf_11: Meth 98.6 1E-07 2.3E-12 72.7 6.5 93 142-274 1-94 (95)
158 TIGR01983 UbiG ubiquinone bios 98.6 3.7E-07 8.1E-12 81.8 11.1 106 137-279 45-151 (224)
159 PF05401 NodS: Nodulation prot 98.6 9.9E-08 2.1E-12 83.1 7.0 119 121-277 27-146 (201)
160 PRK01581 speE spermidine synth 98.6 3E-07 6.5E-12 87.7 10.8 79 137-218 150-235 (374)
161 PLN02336 phosphoethanolamine N 98.6 3.3E-07 7.2E-12 91.6 11.8 120 122-277 22-142 (475)
162 TIGR00006 S-adenosyl-methyltra 98.6 1.1E-07 2.5E-12 88.9 7.6 90 130-221 13-104 (305)
163 KOG1663 O-methyltransferase [S 98.6 5.2E-07 1.1E-11 80.0 11.2 100 119-218 55-158 (237)
164 TIGR03840 TMPT_Se_Te thiopurin 98.6 4.7E-07 1E-11 81.0 11.1 75 136-215 33-119 (213)
165 KOG1270 Methyltransferases [Co 98.6 1.6E-07 3.5E-12 84.7 7.9 72 135-215 87-164 (282)
166 PF08242 Methyltransf_12: Meth 98.6 2.6E-08 5.6E-13 77.7 2.5 72 142-215 1-72 (99)
167 TIGR00755 ksgA dimethyladenosi 98.6 2.6E-07 5.7E-12 84.8 9.1 84 126-219 18-104 (253)
168 PRK06202 hypothetical protein; 98.6 2.6E-07 5.6E-12 83.6 8.8 80 131-216 54-136 (232)
169 TIGR00417 speE spermidine synt 98.5 5.9E-07 1.3E-11 83.3 10.9 124 137-293 72-200 (270)
170 TIGR03438 probable methyltrans 98.5 1.4E-06 3.1E-11 82.0 13.5 65 136-200 62-127 (301)
171 COG2521 Predicted archaeal met 98.5 6.5E-08 1.4E-12 85.7 4.0 144 131-306 128-275 (287)
172 COG4076 Predicted RNA methylas 98.5 1.1E-07 2.3E-12 81.6 5.2 71 138-216 33-103 (252)
173 PLN02585 magnesium protoporphy 98.5 3.9E-07 8.4E-12 86.2 9.3 70 137-215 144-218 (315)
174 PRK11088 rrmA 23S rRNA methylt 98.5 5.8E-07 1.3E-11 83.4 10.3 72 136-215 84-157 (272)
175 KOG2730 Methylase [General fun 98.5 6.4E-08 1.4E-12 85.0 2.8 87 137-226 94-182 (263)
176 PRK05785 hypothetical protein; 98.5 4.1E-07 8.9E-12 82.1 8.2 66 137-215 51-116 (226)
177 PRK07580 Mg-protoporphyrin IX 98.5 7.3E-07 1.6E-11 80.1 9.6 71 136-215 62-133 (230)
178 COG0220 Predicted S-adenosylme 98.5 3.7E-07 8E-12 82.2 7.3 122 139-291 50-172 (227)
179 KOG4589 Cell division protein 98.4 2.9E-06 6.3E-11 72.9 11.6 124 135-294 67-198 (232)
180 PF02390 Methyltransf_4: Putat 98.4 1.8E-07 4E-12 82.5 4.2 136 139-304 19-156 (195)
181 PRK13255 thiopurine S-methyltr 98.4 4.5E-06 9.8E-11 74.9 13.2 87 123-214 21-121 (218)
182 COG0030 KsgA Dimethyladenosine 98.4 1.3E-06 2.9E-11 79.7 9.8 90 126-222 19-108 (259)
183 PLN02366 spermidine synthase 98.4 2.8E-06 6E-11 80.1 11.7 81 136-218 90-174 (308)
184 PRK11783 rlmL 23S rRNA m(2)G24 98.4 2.2E-06 4.7E-11 89.7 11.4 110 109-219 155-313 (702)
185 PF01861 DUF43: Protein of unk 98.4 1.4E-06 3E-11 78.2 8.3 129 137-305 44-175 (243)
186 KOG3191 Predicted N6-DNA-methy 98.4 2.2E-06 4.7E-11 73.4 8.8 78 137-219 43-120 (209)
187 smart00138 MeTrc Methyltransfe 98.4 2E-06 4.3E-11 79.5 9.2 107 136-275 98-240 (264)
188 TIGR02987 met_A_Alw26 type II 98.3 4.6E-06 1E-10 84.5 12.3 107 117-223 4-126 (524)
189 PF08003 Methyltransf_9: Prote 98.3 9.4E-05 2E-09 68.8 18.8 115 133-285 111-227 (315)
190 KOG1541 Predicted protein carb 98.3 9E-06 2E-10 71.7 11.2 89 117-215 28-118 (270)
191 PF01728 FtsJ: FtsJ-like methy 98.3 2.5E-07 5.3E-12 80.4 1.3 75 137-222 23-106 (181)
192 PF13489 Methyltransf_23: Meth 98.2 2.9E-06 6.4E-11 71.3 7.2 106 126-279 10-117 (161)
193 KOG1661 Protein-L-isoaspartate 98.2 6E-06 1.3E-10 72.3 9.1 85 131-218 74-171 (237)
194 PF07021 MetW: Methionine bios 98.2 2.5E-06 5.5E-11 74.2 6.8 71 135-215 11-81 (193)
195 COG0286 HsdM Type I restrictio 98.2 5E-06 1.1E-10 83.3 9.4 109 117-225 166-280 (489)
196 KOG0820 Ribosomal RNA adenine 98.2 8.2E-06 1.8E-10 74.1 8.9 83 130-220 51-134 (315)
197 PF01795 Methyltransf_5: MraW 98.2 7.1E-07 1.5E-11 83.5 1.9 91 129-221 12-105 (310)
198 COG0275 Predicted S-adenosylme 98.2 7.7E-06 1.7E-10 75.5 8.5 92 129-221 15-108 (314)
199 TIGR02081 metW methionine bios 98.1 1.4E-05 3E-10 70.3 8.1 72 136-218 12-84 (194)
200 PLN02823 spermine synthase 98.0 6.2E-05 1.4E-09 71.8 12.4 78 138-218 104-185 (336)
201 PF02005 TRM: N2,N2-dimethylgu 98.0 1E-05 2.2E-10 78.3 6.0 104 138-279 50-155 (377)
202 COG3963 Phospholipid N-methylt 98.0 6E-05 1.3E-09 63.8 9.5 118 127-279 38-158 (194)
203 PF00398 RrnaAD: Ribosomal RNA 98.0 2.6E-05 5.7E-10 71.9 8.1 89 126-219 19-107 (262)
204 TIGR00478 tly hemolysin TlyA f 98.0 1E-05 2.2E-10 73.0 5.0 40 136-177 74-113 (228)
205 PRK01544 bifunctional N5-gluta 97.9 2.3E-05 4.9E-10 79.0 7.7 80 137-218 347-426 (506)
206 PF08123 DOT1: Histone methyla 97.9 3.1E-05 6.7E-10 68.8 7.3 91 130-221 35-134 (205)
207 PRK13256 thiopurine S-methyltr 97.9 4.9E-05 1.1E-09 68.4 8.6 77 135-214 41-129 (226)
208 KOG4300 Predicted methyltransf 97.9 9E-05 1.9E-09 64.9 9.8 142 132-313 71-215 (252)
209 TIGR01444 fkbM_fam methyltrans 97.9 4.5E-05 9.8E-10 63.2 7.7 59 140-199 1-59 (143)
210 PRK04148 hypothetical protein; 97.9 8.1E-05 1.8E-09 61.4 8.5 73 131-215 10-83 (134)
211 PF04445 SAM_MT: Putative SAM- 97.9 6.3E-05 1.4E-09 67.7 8.5 88 126-218 62-160 (234)
212 cd00315 Cyt_C5_DNA_methylase C 97.9 2.5E-05 5.5E-10 72.6 6.2 79 140-227 2-80 (275)
213 PRK11760 putative 23S rRNA C24 97.9 4.9E-05 1.1E-09 71.9 7.9 73 135-220 209-281 (357)
214 PF05185 PRMT5: PRMT5 arginine 97.9 4.6E-05 1E-09 75.5 8.1 76 138-217 187-266 (448)
215 KOG1499 Protein arginine N-met 97.8 6.1E-05 1.3E-09 71.0 8.1 74 136-215 59-133 (346)
216 COG0357 GidB Predicted S-adeno 97.7 0.00013 2.8E-09 65.1 8.4 76 138-217 68-143 (215)
217 PF02527 GidB: rRNA small subu 97.7 0.00013 2.8E-09 63.8 8.0 73 140-217 51-123 (184)
218 PF01564 Spermine_synth: Sperm 97.7 8.4E-05 1.8E-09 68.0 6.9 81 137-219 76-160 (246)
219 PF12147 Methyltransf_20: Puta 97.7 0.00096 2.1E-08 61.6 13.6 127 137-294 135-264 (311)
220 PF04816 DUF633: Family of unk 97.7 0.00029 6.2E-09 62.6 9.7 118 141-304 1-120 (205)
221 PF05724 TPMT: Thiopurine S-me 97.6 7.2E-05 1.6E-09 67.1 5.0 77 133-214 33-121 (218)
222 KOG1500 Protein arginine N-met 97.6 0.00031 6.7E-09 65.7 8.2 75 137-218 177-252 (517)
223 PF05219 DREV: DREV methyltran 97.5 0.00063 1.4E-08 61.9 9.5 122 137-305 94-237 (265)
224 PF10294 Methyltransf_16: Puta 97.5 0.00013 2.9E-09 63.0 5.0 78 136-215 44-125 (173)
225 KOG1253 tRNA methyltransferase 97.5 6.8E-05 1.5E-09 73.3 3.2 109 135-279 107-217 (525)
226 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.0003 6.4E-09 66.8 7.2 78 138-218 53-130 (380)
227 PF05971 Methyltransf_10: Prot 97.4 0.00075 1.6E-08 63.1 9.4 160 138-303 103-280 (299)
228 COG3897 Predicted methyltransf 97.4 0.00024 5.3E-09 61.7 5.5 70 137-215 79-148 (218)
229 PF13578 Methyltransf_24: Meth 97.4 1.5E-05 3.2E-10 62.9 -2.0 76 142-219 1-79 (106)
230 PF06962 rRNA_methylase: Putat 97.4 0.00051 1.1E-08 57.0 6.6 117 164-304 1-121 (140)
231 PF13679 Methyltransf_32: Meth 97.3 0.00069 1.5E-08 56.5 7.1 63 136-198 24-92 (141)
232 COG0421 SpeE Spermidine syntha 97.3 0.00055 1.2E-08 63.7 7.0 85 130-218 70-158 (282)
233 PF03291 Pox_MCEL: mRNA cappin 97.3 0.00094 2E-08 63.7 8.4 122 137-293 62-196 (331)
234 KOG3010 Methyltransferase [Gen 97.1 0.00059 1.3E-08 61.2 4.2 82 128-215 23-106 (261)
235 PF00145 DNA_methylase: C-5 cy 97.0 0.0005 1.1E-08 64.8 3.6 77 140-227 2-79 (335)
236 PHA01634 hypothetical protein 97.0 0.0037 8E-08 50.8 7.8 76 137-222 28-103 (156)
237 KOG2899 Predicted methyltransf 97.0 0.0011 2.3E-08 59.7 5.0 48 137-185 58-105 (288)
238 PF00891 Methyltransf_2: O-met 96.9 0.007 1.5E-07 54.9 10.2 113 130-286 93-208 (241)
239 PLN02232 ubiquinone biosynthes 96.8 0.0047 1E-07 52.6 7.5 79 166-279 1-83 (160)
240 TIGR00675 dcm DNA-methyltransf 96.8 0.0015 3.3E-08 61.9 4.9 78 141-228 1-78 (315)
241 KOG2361 Predicted methyltransf 96.8 0.0028 6E-08 57.0 6.1 59 140-199 74-133 (264)
242 COG4262 Predicted spermidine s 96.7 0.018 3.8E-07 54.9 11.1 81 136-219 288-375 (508)
243 KOG1099 SAM-dependent methyltr 96.7 0.0039 8.4E-08 55.6 6.0 113 139-290 43-173 (294)
244 COG1568 Predicted methyltransf 96.7 0.0036 7.7E-08 57.3 5.8 81 137-220 152-232 (354)
245 PF11599 AviRa: RRNA methyltra 96.7 0.006 1.3E-07 54.0 6.9 61 123-183 34-98 (246)
246 COG4976 Predicted methyltransf 96.6 0.0015 3.3E-08 58.3 2.7 127 134-304 122-261 (287)
247 COG2384 Predicted SAM-dependen 96.6 0.051 1.1E-06 48.4 12.2 116 136-294 15-132 (226)
248 TIGR00497 hsdM type I restrict 96.6 0.014 3.1E-07 58.9 9.9 106 115-221 193-305 (501)
249 COG1189 Predicted rRNA methyla 96.5 0.0082 1.8E-07 54.0 7.2 77 137-221 79-156 (245)
250 TIGR03439 methyl_EasF probable 96.5 0.0074 1.6E-07 57.2 7.3 65 136-200 75-144 (319)
251 KOG1227 Putative methyltransfe 96.5 0.0014 3E-08 60.6 2.1 96 114-215 162-268 (351)
252 KOG3115 Methyltransferase-like 96.4 0.01 2.3E-07 52.0 7.0 67 137-204 60-133 (249)
253 KOG1098 Putative SAM-dependent 96.4 0.0025 5.3E-08 64.1 3.4 75 135-220 42-121 (780)
254 PF06080 DUF938: Protein of un 96.4 0.018 4E-07 50.9 8.4 126 138-294 26-162 (204)
255 KOG1975 mRNA cap methyltransfe 96.4 0.029 6.3E-07 52.6 9.9 132 126-294 108-248 (389)
256 PRK00536 speE spermidine synth 96.3 0.056 1.2E-06 49.8 11.6 71 138-217 73-147 (262)
257 COG0270 Dcm Site-specific DNA 96.3 0.0078 1.7E-07 57.4 6.1 83 139-228 4-86 (328)
258 KOG2782 Putative SAM dependent 96.2 0.0023 5.1E-08 56.5 1.9 93 129-222 35-131 (303)
259 PRK10458 DNA cytosine methylas 96.2 0.02 4.3E-07 57.1 8.2 85 138-226 88-186 (467)
260 PRK11524 putative methyltransf 96.0 0.014 3E-07 54.5 6.1 46 136-184 207-252 (284)
261 KOG2078 tRNA modification enzy 95.9 0.0036 7.8E-08 60.5 1.8 64 135-201 247-312 (495)
262 PF09243 Rsm22: Mitochondrial 95.9 0.025 5.3E-07 52.6 7.2 48 138-185 34-81 (274)
263 KOG0024 Sorbitol dehydrogenase 95.9 0.056 1.2E-06 50.8 9.4 108 108-224 140-254 (354)
264 PF03059 NAS: Nicotianamine sy 95.9 0.036 7.7E-07 51.4 7.9 77 139-218 122-201 (276)
265 PRK10611 chemotaxis methyltran 95.8 0.051 1.1E-06 50.8 8.6 105 139-275 117-260 (287)
266 KOG1709 Guanidinoacetate methy 95.7 0.13 2.8E-06 45.8 10.4 112 136-285 100-212 (271)
267 PF01555 N6_N4_Mtase: DNA meth 95.7 0.02 4.4E-07 50.6 5.5 43 135-180 189-231 (231)
268 PF05891 Methyltransf_PK: AdoM 95.6 0.03 6.5E-07 49.9 6.0 74 138-216 56-129 (218)
269 COG0500 SmtA SAM-dependent met 95.4 0.39 8.4E-06 38.0 11.9 70 141-213 52-123 (257)
270 PRK13699 putative methylase; P 95.4 0.037 8E-07 50.0 6.2 48 135-185 161-208 (227)
271 PF10354 DUF2431: Domain of un 95.4 0.51 1.1E-05 40.4 12.8 138 145-305 4-149 (166)
272 PF07279 DUF1442: Protein of u 95.3 0.082 1.8E-06 46.9 7.7 93 122-217 26-123 (218)
273 PF05148 Methyltransf_8: Hypot 95.1 0.089 1.9E-06 46.7 7.5 111 135-305 70-182 (219)
274 PF07091 FmrO: Ribosomal RNA m 95.0 0.085 1.8E-06 48.0 7.2 74 136-215 104-177 (251)
275 KOG1501 Arginine N-methyltrans 94.8 0.065 1.4E-06 52.2 6.0 58 140-199 69-127 (636)
276 COG1064 AdhP Zn-dependent alco 94.7 0.19 4.2E-06 47.9 9.0 76 133-218 162-238 (339)
277 PF04989 CmcI: Cephalosporin h 94.6 0.05 1.1E-06 48.2 4.5 101 117-218 11-120 (206)
278 COG1352 CheR Methylase of chem 94.1 0.36 7.7E-06 44.7 9.3 106 138-276 97-239 (268)
279 PRK01747 mnmC bifunctional tRN 94.0 0.25 5.5E-06 51.6 9.2 126 137-305 57-224 (662)
280 COG2933 Predicted SAM-dependen 93.7 0.16 3.4E-06 46.5 5.9 71 135-218 209-279 (358)
281 KOG3045 Predicted RNA methylas 93.6 0.43 9.4E-06 43.7 8.4 114 131-304 173-287 (325)
282 COG1063 Tdh Threonine dehydrog 93.6 0.37 8.1E-06 46.3 8.8 47 134-181 165-212 (350)
283 COG3129 Predicted SAM-dependen 93.0 0.21 4.6E-06 44.9 5.5 85 137-222 78-166 (292)
284 PLN02662 cinnamyl-alcohol dehy 92.0 1.9 4.1E-05 40.2 11.1 120 138-277 4-126 (322)
285 COG2961 ComJ Protein involved 91.9 2.7 5.9E-05 38.3 11.1 124 136-298 88-212 (279)
286 PLN02989 cinnamyl-alcohol dehy 91.8 2 4.3E-05 40.3 11.0 81 137-218 4-86 (325)
287 PLN03209 translocon at the inn 91.7 2.1 4.5E-05 43.9 11.6 83 133-216 75-166 (576)
288 PF10237 N6-adenineMlase: Prob 91.5 3.2 7E-05 35.4 10.8 121 123-293 9-135 (162)
289 KOG0022 Alcohol dehydrogenase, 90.0 0.81 1.8E-05 43.1 6.2 56 129-188 184-239 (375)
290 COG4798 Predicted methyltransf 89.9 0.55 1.2E-05 41.2 4.7 42 132-173 43-84 (238)
291 PF03721 UDPG_MGDP_dh_N: UDP-g 89.8 0.25 5.3E-06 43.1 2.5 136 147-315 7-158 (185)
292 COG0677 WecC UDP-N-acetyl-D-ma 89.8 0.4 8.6E-06 46.5 4.1 117 147-295 16-145 (436)
293 PLN00198 anthocyanidin reducta 89.6 3.8 8.3E-05 38.6 10.8 83 133-217 4-88 (338)
294 KOG1269 SAM-dependent methyltr 89.6 0.65 1.4E-05 44.9 5.5 84 131-219 104-189 (364)
295 PRK08213 gluconate 5-dehydroge 89.3 3.9 8.5E-05 36.8 10.3 82 137-220 11-100 (259)
296 KOG4058 Uncharacterized conser 89.2 0.86 1.9E-05 38.2 5.1 70 133-204 68-138 (199)
297 PLN02896 cinnamyl-alcohol dehy 89.1 3.9 8.5E-05 38.9 10.6 81 138-221 10-91 (353)
298 PLN02986 cinnamyl-alcohol dehy 88.1 5.5 0.00012 37.3 10.7 81 137-218 4-86 (322)
299 TIGR03589 PseB UDP-N-acetylglu 88.0 3.7 7.9E-05 38.8 9.5 77 138-218 4-83 (324)
300 PRK08339 short chain dehydroge 87.1 18 0.0004 32.7 13.3 80 138-218 8-94 (263)
301 TIGR01963 PHB_DH 3-hydroxybuty 87.0 15 0.00034 32.5 12.6 79 140-220 3-89 (255)
302 PF03141 Methyltransf_29: Puta 86.9 0.39 8.5E-06 47.8 2.1 98 140-281 120-223 (506)
303 COG1062 AdhC Zn-dependent alco 86.8 1.9 4.1E-05 41.1 6.4 56 129-188 177-232 (366)
304 KOG2940 Predicted methyltransf 86.8 0.69 1.5E-05 41.7 3.4 82 127-215 61-143 (325)
305 KOG3987 Uncharacterized conser 86.7 0.14 3E-06 45.3 -1.0 40 138-180 113-152 (288)
306 PLN02214 cinnamoyl-CoA reducta 86.6 10 0.00022 36.1 11.7 80 137-218 9-90 (342)
307 PRK06914 short chain dehydroge 86.4 9.3 0.0002 34.7 11.0 83 138-221 3-93 (280)
308 PRK12429 3-hydroxybutyrate deh 86.0 7.7 0.00017 34.6 10.1 79 138-218 4-90 (258)
309 PRK06194 hypothetical protein; 85.9 8 0.00017 35.3 10.3 82 138-221 6-95 (287)
310 PF05050 Methyltransf_21: Meth 85.8 2.2 4.9E-05 35.3 6.0 43 143-185 1-48 (167)
311 KOG3178 Hydroxyindole-O-methyl 85.6 8.8 0.00019 36.7 10.3 105 131-278 167-276 (342)
312 PLN02650 dihydroflavonol-4-red 85.5 6.5 0.00014 37.3 9.8 80 138-218 5-86 (351)
313 KOG2912 Predicted DNA methylas 85.4 0.95 2.1E-05 42.6 3.7 80 141-221 106-190 (419)
314 PRK07109 short chain dehydroge 85.3 12 0.00026 35.5 11.5 80 137-218 7-94 (334)
315 PF01739 CheR: CheR methyltran 85.1 1.4 3.1E-05 38.8 4.6 105 138-275 32-173 (196)
316 PRK15182 Vi polysaccharide bio 85.1 3.1 6.8E-05 41.2 7.5 115 146-295 12-137 (425)
317 cd08230 glucose_DH Glucose deh 84.6 7.4 0.00016 37.0 9.7 48 135-188 170-221 (355)
318 KOG2651 rRNA adenine N-6-methy 84.5 3.4 7.3E-05 40.0 7.0 52 127-180 143-194 (476)
319 PRK11524 putative methyltransf 84.2 1.3 2.8E-05 41.2 4.2 76 188-280 7-82 (284)
320 PRK07523 gluconate 5-dehydroge 84.1 12 0.00026 33.5 10.4 81 137-219 9-97 (255)
321 PRK09880 L-idonate 5-dehydroge 83.7 13 0.00029 35.1 11.0 51 134-189 166-217 (343)
322 PRK07097 gluconate 5-dehydroge 83.7 30 0.00064 31.2 13.0 81 137-219 9-97 (265)
323 PRK06139 short chain dehydroge 82.9 16 0.00034 34.8 11.1 81 137-219 6-94 (330)
324 TIGR02822 adh_fam_2 zinc-bindi 82.9 23 0.00049 33.4 12.2 51 133-189 161-212 (329)
325 PRK05867 short chain dehydroge 82.9 8.9 0.00019 34.3 9.1 80 137-218 8-95 (253)
326 PF07942 N2227: N2227-like pro 82.6 16 0.00035 33.8 10.6 44 137-183 56-99 (270)
327 PRK09242 tropinone reductase; 82.4 22 0.00047 31.8 11.4 80 138-218 9-97 (257)
328 PF04672 Methyltransf_19: S-ad 82.3 2.7 5.8E-05 38.9 5.2 63 139-201 70-134 (267)
329 KOG1331 Predicted methyltransf 82.2 1.4 3E-05 40.9 3.3 65 137-215 45-109 (293)
330 cd08283 FDH_like_1 Glutathione 82.0 4.9 0.00011 38.9 7.4 49 132-181 179-228 (386)
331 PRK07904 short chain dehydroge 81.9 5.9 0.00013 35.8 7.5 80 136-216 6-94 (253)
332 PRK07677 short chain dehydroge 81.7 36 0.00078 30.3 12.6 79 139-219 2-88 (252)
333 PTZ00357 methyltransferase; Pr 81.5 6.6 0.00014 41.0 8.1 77 140-216 703-799 (1072)
334 PRK12826 3-ketoacyl-(acyl-carr 81.5 17 0.00037 32.0 10.3 80 138-219 6-93 (251)
335 KOG0822 Protein kinase inhibit 81.4 2.6 5.6E-05 42.4 5.1 73 140-216 370-446 (649)
336 PRK13699 putative methylase; P 81.3 1.4 3E-05 39.8 3.0 74 190-281 2-75 (227)
337 cd05565 PTS_IIB_lactose PTS_II 80.8 2.3 5E-05 33.2 3.7 54 141-218 3-56 (99)
338 KOG2798 Putative trehalase [Ca 80.4 3.1 6.7E-05 39.3 5.0 42 138-182 151-192 (369)
339 PRK08594 enoyl-(acyl carrier p 80.4 17 0.00036 32.9 9.9 82 137-218 6-96 (257)
340 PRK06196 oxidoreductase; Provi 80.3 16 0.00036 34.0 10.2 77 137-219 25-109 (315)
341 KOG0919 C-5 cytosine-specific 80.3 1.7 3.6E-05 39.5 3.1 87 139-230 4-90 (338)
342 PRK09291 short chain dehydroge 80.1 38 0.00082 30.1 12.2 78 139-218 3-82 (257)
343 PRK05653 fabG 3-ketoacyl-(acyl 80.0 26 0.00057 30.6 11.0 79 138-218 5-91 (246)
344 COG0863 DNA modification methy 79.9 4.4 9.5E-05 37.5 6.1 48 135-185 220-267 (302)
345 KOG4174 Uncharacterized conser 79.9 39 0.00084 31.1 11.6 145 137-304 56-213 (282)
346 PRK08063 enoyl-(acyl carrier p 79.9 16 0.00035 32.4 9.6 79 138-218 4-91 (250)
347 PRK08085 gluconate 5-dehydroge 79.6 38 0.00083 30.1 12.0 80 138-219 9-96 (254)
348 TIGR00853 pts-lac PTS system, 79.4 3.3 7.1E-05 32.0 4.2 55 140-218 5-59 (95)
349 cd05564 PTS_IIB_chitobiose_lic 79.3 2.9 6.3E-05 32.3 3.9 52 144-218 4-55 (96)
350 PRK10309 galactitol-1-phosphat 79.1 13 0.00029 35.0 9.2 51 133-188 156-207 (347)
351 COG3510 CmcI Cephalosporin hyd 79.0 3.9 8.5E-05 35.9 4.8 78 119-201 50-131 (237)
352 KOG2793 Putative N2,N2-dimethy 78.7 9 0.00019 35.0 7.4 87 126-215 74-168 (248)
353 PF11899 DUF3419: Protein of u 78.2 7.8 0.00017 37.8 7.3 66 115-183 12-78 (380)
354 PF04378 RsmJ: Ribosomal RNA s 78.1 5.7 0.00012 36.3 5.9 68 145-219 63-135 (245)
355 PRK08251 short chain dehydroge 77.9 40 0.00086 29.8 11.5 81 138-219 2-91 (248)
356 TIGR03451 mycoS_dep_FDH mycoth 77.9 10 0.00022 36.1 8.0 51 133-188 172-223 (358)
357 PRK15181 Vi polysaccharide bio 77.7 16 0.00034 34.8 9.2 81 138-219 15-100 (348)
358 KOG1197 Predicted quinone oxid 77.7 5.4 0.00012 36.7 5.5 64 131-199 140-205 (336)
359 TIGR02622 CDP_4_6_dhtase CDP-g 77.6 15 0.00033 34.8 9.2 78 138-218 4-84 (349)
360 PRK07666 fabG 3-ketoacyl-(acyl 77.5 42 0.00091 29.5 11.5 80 138-219 7-94 (239)
361 PRK09590 celB cellobiose phosp 77.4 4.1 9E-05 32.0 4.3 57 140-218 3-59 (104)
362 PF02254 TrkA_N: TrkA-N domain 77.3 3.7 8E-05 32.2 4.1 66 146-218 4-71 (116)
363 PRK08217 fabG 3-ketoacyl-(acyl 76.8 36 0.00077 30.0 10.9 80 137-218 4-91 (253)
364 PLN02427 UDP-apiose/xylose syn 76.7 15 0.00031 35.5 8.8 78 138-216 14-93 (386)
365 PRK13394 3-hydroxybutyrate deh 76.1 27 0.00058 31.1 9.9 81 138-220 7-95 (262)
366 KOG0821 Predicted ribosomal RN 76.0 5.7 0.00012 35.7 5.1 64 134-200 47-110 (326)
367 PRK07832 short chain dehydroge 75.7 18 0.00039 32.8 8.7 77 141-218 3-87 (272)
368 PRK07062 short chain dehydroge 75.6 60 0.0013 29.1 13.3 80 138-218 8-96 (265)
369 KOG3924 Putative protein methy 74.7 11 0.00024 36.7 7.0 156 128-317 183-352 (419)
370 PRK06079 enoyl-(acyl carrier p 74.7 33 0.00072 30.7 10.2 78 137-218 6-92 (252)
371 PRK08945 putative oxoacyl-(acy 74.3 12 0.00027 33.2 7.2 83 135-218 9-101 (247)
372 KOG1562 Spermidine synthase [A 73.8 13 0.00028 35.0 7.0 124 137-295 121-248 (337)
373 PRK08340 glucose-1-dehydrogena 72.7 71 0.0015 28.5 13.0 76 140-218 2-85 (259)
374 PRK10310 PTS system galactitol 71.8 8.9 0.00019 29.4 4.8 53 144-218 7-59 (94)
375 PF02086 MethyltransfD12: D12 71.4 6.1 0.00013 35.7 4.5 40 137-179 20-59 (260)
376 PRK07041 short chain dehydroge 71.0 61 0.0013 28.2 10.8 71 146-218 4-78 (230)
377 COG0451 WcaG Nucleoside-diphos 70.7 15 0.00032 33.8 7.0 110 141-276 3-114 (314)
378 PRK05993 short chain dehydroge 70.7 33 0.00072 31.2 9.3 72 138-217 4-84 (277)
379 PF05206 TRM13: Methyltransfer 70.7 9.3 0.0002 35.2 5.4 65 136-201 17-86 (259)
380 KOG3350 Uncharacterized conser 70.7 6.2 0.00013 34.2 3.9 93 116-221 51-147 (217)
381 PRK05876 short chain dehydroge 70.6 48 0.001 30.2 10.3 80 137-218 5-92 (275)
382 PRK07984 enoyl-(acyl carrier p 70.6 52 0.0011 29.9 10.5 80 137-218 5-93 (262)
383 PRK05599 hypothetical protein; 70.3 17 0.00036 32.6 7.1 77 140-217 2-85 (246)
384 PRK07533 enoyl-(acyl carrier p 69.9 12 0.00026 33.8 6.1 80 137-218 9-97 (258)
385 PRK06603 enoyl-(acyl carrier p 69.9 52 0.0011 29.7 10.3 80 137-218 7-95 (260)
386 PRK09186 flagellin modificatio 69.8 60 0.0013 28.7 10.6 80 138-218 4-92 (256)
387 KOG1205 Predicted dehydrogenas 69.5 18 0.00039 33.8 7.0 84 137-221 11-103 (282)
388 PRK06182 short chain dehydroge 69.5 35 0.00077 30.8 9.1 73 138-218 3-83 (273)
389 PRK08267 short chain dehydroge 69.3 54 0.0012 29.2 10.3 75 140-218 3-86 (260)
390 PRK12937 short chain dehydroge 69.2 39 0.00085 29.7 9.2 79 138-218 5-92 (245)
391 COG4555 NatA ABC-type Na+ tran 69.2 4.4 9.5E-05 36.1 2.8 17 209-225 151-167 (245)
392 PRK15057 UDP-glucose 6-dehydro 69.1 49 0.0011 32.3 10.4 34 147-180 7-40 (388)
393 PRK08324 short chain dehydroge 69.1 20 0.00044 37.7 8.3 81 137-220 421-509 (681)
394 PRK07326 short chain dehydroge 69.1 20 0.00044 31.4 7.3 77 138-217 6-90 (237)
395 PRK12746 short chain dehydroge 69.0 30 0.00066 30.7 8.5 79 138-218 6-99 (254)
396 PRK08159 enoyl-(acyl carrier p 68.9 78 0.0017 28.8 11.3 80 137-218 9-97 (272)
397 PRK05855 short chain dehydroge 68.8 99 0.0021 31.1 13.1 81 138-220 315-403 (582)
398 PRK08643 acetoin reductase; Va 68.8 84 0.0018 27.8 13.1 77 139-217 3-87 (256)
399 KOG3201 Uncharacterized conser 68.7 4.4 9.5E-05 34.7 2.6 97 117-215 6-109 (201)
400 cd08237 ribitol-5-phosphate_DH 68.6 13 0.00028 35.3 6.2 47 134-180 160-207 (341)
401 PRK06949 short chain dehydroge 68.6 26 0.00056 31.2 8.0 80 137-218 8-95 (258)
402 PRK06198 short chain dehydroge 68.5 37 0.00081 30.2 9.0 81 137-219 5-94 (260)
403 PRK07454 short chain dehydroge 68.5 30 0.00065 30.5 8.3 78 138-217 6-91 (241)
404 PRK12859 3-ketoacyl-(acyl-carr 68.5 71 0.0015 28.5 10.9 83 137-220 5-107 (256)
405 KOG1502 Flavonol reductase/cin 68.4 65 0.0014 30.8 10.6 121 138-277 6-128 (327)
406 PRK12744 short chain dehydroge 68.2 82 0.0018 28.0 11.2 78 138-217 8-97 (257)
407 PRK06940 short chain dehydroge 68.0 28 0.0006 31.8 8.1 76 140-218 4-85 (275)
408 TIGR03201 dearomat_had 6-hydro 67.5 21 0.00045 33.8 7.4 50 133-188 162-212 (349)
409 PRK10675 UDP-galactose-4-epime 67.4 29 0.00063 32.4 8.3 78 140-218 2-82 (338)
410 COG1748 LYS9 Saccharopine dehy 67.0 8.1 0.00018 37.7 4.4 74 139-218 2-77 (389)
411 TIGR02415 23BDH acetoin reduct 66.4 93 0.002 27.4 12.3 79 141-221 3-89 (254)
412 PRK09260 3-hydroxybutyryl-CoA 65.1 23 0.00049 32.8 7.0 42 140-183 3-45 (288)
413 PRK07831 short chain dehydroge 65.0 34 0.00074 30.7 8.0 82 137-218 16-106 (262)
414 PRK06179 short chain dehydroge 64.9 59 0.0013 29.2 9.6 71 138-218 4-82 (270)
415 PRK08219 short chain dehydroge 64.9 24 0.00051 30.6 6.8 75 139-219 4-81 (227)
416 PRK07814 short chain dehydroge 64.7 34 0.00073 30.8 8.0 79 137-217 9-95 (263)
417 CHL00194 ycf39 Ycf39; Provisio 64.6 30 0.00065 32.3 7.8 68 140-215 2-70 (317)
418 PF01488 Shikimate_DH: Shikima 64.6 33 0.00071 27.9 7.1 76 137-223 11-86 (135)
419 TIGR03206 benzo_BadH 2-hydroxy 64.5 99 0.0022 27.1 12.5 81 138-220 3-91 (250)
420 PRK05650 short chain dehydroge 64.3 89 0.0019 28.1 10.7 77 140-218 2-86 (270)
421 TIGR03026 NDP-sugDHase nucleot 64.2 60 0.0013 31.8 10.1 117 147-295 7-137 (411)
422 COG5379 BtaA S-adenosylmethion 64.0 16 0.00034 34.4 5.4 68 114-184 39-107 (414)
423 PRK09135 pteridine reductase; 63.9 45 0.00097 29.3 8.5 81 137-218 5-94 (249)
424 PRK06701 short chain dehydroge 63.8 53 0.0012 30.2 9.2 80 137-218 45-133 (290)
425 COG4301 Uncharacterized conser 63.5 29 0.00062 31.9 6.9 70 130-200 71-145 (321)
426 PRK08265 short chain dehydroge 63.4 1.1E+02 0.0024 27.3 11.2 76 138-218 6-89 (261)
427 TIGR02632 RhaD_aldol-ADH rhamn 63.3 51 0.0011 34.7 9.9 81 138-219 414-503 (676)
428 PRK06172 short chain dehydroge 63.3 46 0.001 29.5 8.5 78 138-217 7-92 (253)
429 PRK12939 short chain dehydroge 62.7 36 0.00078 30.0 7.7 80 137-218 6-93 (250)
430 PRK06197 short chain dehydroge 62.6 34 0.00075 31.6 7.8 81 137-218 15-104 (306)
431 COG4221 Short-chain alcohol de 62.5 26 0.00056 32.0 6.5 77 138-218 6-90 (246)
432 PRK11908 NAD-dependent epimera 62.4 69 0.0015 30.2 10.0 73 140-219 3-78 (347)
433 PRK09424 pntA NAD(P) transhydr 62.4 20 0.00043 36.4 6.4 49 134-188 161-210 (509)
434 PF11968 DUF3321: Putative met 62.3 9.8 0.00021 34.0 3.7 72 125-215 31-110 (219)
435 PRK11064 wecC UDP-N-acetyl-D-m 61.6 1.3E+02 0.0028 29.6 11.8 32 263-294 104-135 (415)
436 PLN02686 cinnamoyl-CoA reducta 60.6 64 0.0014 30.9 9.4 78 136-215 51-134 (367)
437 PF00107 ADH_zinc_N: Zinc-bind 60.6 14 0.0003 29.2 4.2 36 147-188 1-36 (130)
438 PRK08415 enoyl-(acyl carrier p 59.9 31 0.00067 31.6 6.8 79 138-218 5-92 (274)
439 PRK07530 3-hydroxybutyryl-CoA 59.9 71 0.0015 29.5 9.3 43 140-183 6-48 (292)
440 PRK08628 short chain dehydroge 59.7 1.2E+02 0.0026 26.8 10.7 78 138-218 7-92 (258)
441 PLN02353 probable UDP-glucose 59.4 2E+02 0.0044 28.9 14.0 57 259-316 108-164 (473)
442 PF02636 Methyltransf_28: Puta 59.4 12 0.00025 34.1 3.8 46 139-184 20-72 (252)
443 PRK07102 short chain dehydroge 59.2 61 0.0013 28.5 8.5 78 140-218 3-85 (243)
444 PRK06720 hypothetical protein; 59.0 54 0.0012 27.9 7.7 80 137-218 15-102 (169)
445 PRK07792 fabG 3-ketoacyl-(acyl 58.7 88 0.0019 29.0 9.8 78 138-218 12-98 (306)
446 PF01073 3Beta_HSD: 3-beta hyd 58.7 40 0.00086 31.2 7.4 110 145-279 3-117 (280)
447 PRK06138 short chain dehydroge 58.6 1.3E+02 0.0028 26.4 11.2 79 138-219 5-91 (252)
448 PRK05866 short chain dehydroge 58.6 29 0.00062 32.1 6.4 78 138-217 40-125 (293)
449 PLN02583 cinnamoyl-CoA reducta 58.3 1.4E+02 0.0031 27.4 11.1 77 137-215 5-84 (297)
450 PF05711 TylF: Macrocin-O-meth 58.1 19 0.00041 32.9 4.9 122 137-294 74-227 (248)
451 PRK06482 short chain dehydroge 58.1 41 0.0009 30.4 7.3 76 140-220 4-87 (276)
452 PF03446 NAD_binding_2: NAD bi 58.0 24 0.00053 29.6 5.4 99 147-293 8-109 (163)
453 PF07669 Eco57I: Eco57I restri 57.4 10 0.00022 29.7 2.7 66 209-293 2-69 (106)
454 KOG1201 Hydroxysteroid 17-beta 57.4 42 0.00091 31.5 7.1 77 137-218 37-123 (300)
455 PRK07417 arogenate dehydrogena 57.2 63 0.0014 29.8 8.4 34 147-180 7-41 (279)
456 PRK07231 fabG 3-ketoacyl-(acyl 56.9 51 0.0011 29.0 7.6 80 138-220 5-92 (251)
457 COG1004 Ugd Predicted UDP-gluc 56.7 1.5E+02 0.0033 29.2 10.9 46 271-317 113-158 (414)
458 PRK03562 glutathione-regulated 56.7 15 0.00033 38.2 4.6 69 139-216 401-471 (621)
459 PRK08125 bifunctional UDP-gluc 56.5 79 0.0017 33.1 9.9 75 136-217 313-390 (660)
460 PRK06141 ornithine cyclodeamin 56.5 84 0.0018 29.6 9.3 64 124-187 111-175 (314)
461 PRK10669 putative cation:proto 56.4 14 0.00031 37.7 4.3 66 146-218 423-490 (558)
462 PRK05872 short chain dehydroge 56.0 1E+02 0.0022 28.3 9.7 79 137-218 8-94 (296)
463 PRK07069 short chain dehydroge 56.0 85 0.0018 27.6 8.9 72 146-217 6-87 (251)
464 cd01065 NAD_bind_Shikimate_DH 55.9 62 0.0013 26.4 7.5 71 137-218 18-90 (155)
465 PRK12384 sorbitol-6-phosphate 55.5 1.5E+02 0.0032 26.3 12.4 80 138-218 2-90 (259)
466 PLN02540 methylenetetrahydrofo 54.6 27 0.00058 35.9 5.8 62 138-199 28-99 (565)
467 PF02719 Polysacc_synt_2: Poly 54.5 27 0.00059 32.8 5.4 114 144-275 3-125 (293)
468 PRK06180 short chain dehydroge 54.3 1.2E+02 0.0026 27.5 9.7 76 138-218 4-87 (277)
469 PRK09496 trkA potassium transp 54.2 26 0.00056 34.5 5.6 74 138-218 231-306 (453)
470 cd05188 MDR Medium chain reduc 54.2 53 0.0012 28.9 7.3 42 136-179 133-175 (271)
471 PRK05854 short chain dehydroge 54.1 68 0.0015 29.9 8.2 80 138-218 14-102 (313)
472 PRK12825 fabG 3-ketoacyl-(acyl 53.8 1.5E+02 0.0032 25.7 10.7 79 138-218 6-93 (249)
473 PRK06124 gluconate 5-dehydroge 53.5 89 0.0019 27.7 8.7 80 137-218 10-97 (256)
474 PLN02657 3,8-divinyl protochlo 53.3 61 0.0013 31.5 8.0 77 137-215 59-142 (390)
475 PRK06125 short chain dehydroge 53.1 88 0.0019 27.9 8.6 79 138-217 7-89 (259)
476 KOG2352 Predicted spermine/spe 52.9 6.3 0.00014 39.3 1.0 80 136-216 294-377 (482)
477 PLN02572 UDP-sulfoquinovose sy 52.7 69 0.0015 31.8 8.4 81 138-219 47-146 (442)
478 PF00106 adh_short: short chai 52.6 98 0.0021 25.2 8.2 79 141-221 3-92 (167)
479 cd08254 hydroxyacyl_CoA_DH 6-h 52.4 53 0.0012 30.3 7.2 50 134-189 162-212 (338)
480 PRK07791 short chain dehydroge 52.4 62 0.0013 29.7 7.6 80 137-218 5-101 (286)
481 cd08238 sorbose_phosphate_red 52.3 36 0.00078 33.2 6.3 49 133-181 171-222 (410)
482 COG5459 Predicted rRNA methyla 52.3 8.2 0.00018 37.1 1.6 37 138-174 114-150 (484)
483 PRK08303 short chain dehydroge 52.1 54 0.0012 30.6 7.2 79 137-217 7-103 (305)
484 PRK06505 enoyl-(acyl carrier p 52.1 44 0.00095 30.5 6.4 79 137-217 6-93 (271)
485 PRK07340 ornithine cyclodeamin 51.9 1.1E+02 0.0024 28.7 9.2 85 125-218 112-197 (304)
486 PRK12829 short chain dehydroge 51.7 84 0.0018 27.9 8.2 81 134-218 7-95 (264)
487 PRK03659 glutathione-regulated 51.4 20 0.00043 37.2 4.4 70 140-218 402-473 (601)
488 PRK07201 short chain dehydroge 51.4 2.8E+02 0.006 28.6 13.0 76 140-217 2-85 (657)
489 KOG2920 Predicted methyltransf 51.2 11 0.00024 35.0 2.2 63 112-176 85-153 (282)
490 PRK12742 oxidoreductase; Provi 51.2 71 0.0015 27.8 7.5 75 137-218 5-84 (237)
491 PRK07825 short chain dehydroge 51.1 1.8E+02 0.004 26.0 11.9 75 138-218 5-87 (273)
492 PRK08690 enoyl-(acyl carrier p 50.9 38 0.00082 30.6 5.8 80 137-218 5-93 (261)
493 PRK08293 3-hydroxybutyryl-CoA 50.8 1.6E+02 0.0036 27.0 10.2 43 140-183 5-47 (287)
494 PRK06500 short chain dehydroge 50.4 1.7E+02 0.0038 25.5 11.2 76 138-218 6-89 (249)
495 cd08255 2-desacetyl-2-hydroxye 49.9 67 0.0015 28.9 7.3 48 132-180 92-140 (277)
496 COG0604 Qor NADPH:quinone redu 49.9 31 0.00067 32.8 5.2 76 133-214 138-216 (326)
497 PRK05786 fabG 3-ketoacyl-(acyl 49.5 1.1E+02 0.0023 26.7 8.4 78 138-218 5-90 (238)
498 PRK08263 short chain dehydroge 49.3 1.3E+02 0.0029 27.1 9.2 77 138-219 3-87 (275)
499 TIGR00571 dam DNA adenine meth 49.2 47 0.001 30.5 6.1 32 188-222 154-185 (266)
500 PRK10904 DNA adenine methylase 49.1 27 0.00058 32.3 4.5 31 188-221 156-186 (271)
No 1
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-58 Score=439.12 Aligned_cols=290 Identities=31% Similarity=0.423 Sum_probs=245.1
Q ss_pred HHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCCC
Q 019692 28 MLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGC 106 (337)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~ 106 (337)
..++.|+...+.+ .++....+.++++++ .++|+++|||++|.+.+++.+.|+. ++...+..+.+.++.+....
T Consensus 52 ~~~p~w~~~~~~~---~~~~~~~~~~~~a~~---~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 125 (355)
T COG0144 52 YSHPEWLVEKLPD---ALGEDEAEAIAAALL---RPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASG 125 (355)
T ss_pred ccCcHHHHHHHHH---HcChHHHHHHHHHcC---CCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCC
Confidence 4567777554444 455555889999988 4678999999999999999999987 66555555556788888777
Q ss_pred CCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHh
Q 019692 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 107 ~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~-V~avD~~~~~l~~l~~~~~~~ 185 (337)
.+..++.|.+|++++||.+||+++.+|+++||++|||+||||||||+|+|+++.+.+. |+|+|+++.+++.+++|++++
T Consensus 126 ~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl 205 (355)
T COG0144 126 PIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL 205 (355)
T ss_pred CcccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999999999987554 599999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 186 g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
|+.|+.+++.|+..++.......+||.||+||||||+|++||+||.+|. ++++++.+++.+|++||.+|+
T Consensus 206 G~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~----------~~~~~i~~l~~lQ~~iL~~a~ 275 (355)
T COG0144 206 GVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWR----------RTPEDIAELAKLQKEILAAAL 275 (355)
T ss_pred CCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCcccccc----------CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776544322369999999999999999999998763 379999999999999999999
Q ss_pred CCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcc--h--hhcccceeeeeecCCCCCCCCCC
Q 019692 266 SFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAE--A--SQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 266 ~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
+++++ |.|||||||++++|||+||++||+ ++++|+++.....|... + .... ..++++||.|.|.|+|+
T Consensus 276 ~~lk~GG~LVYSTCS~~~eENE~vV~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~p~~~~~dGFFi 348 (355)
T COG0144 276 KLLKPGGVLVYSTCSLTPEENEEVVERFLE--RHPDFELEPVRLPWGPLFEGLGSELG--KTRRLYPHVHGTDGFFI 348 (355)
T ss_pred HhcCCCCEEEEEccCCchhcCHHHHHHHHH--hCCCceeecccccccccccccccccC--CeEEECCCCCCCCCeEE
Confidence 99986 999999999999999999999995 57788887654445431 1 1122 23799999998899995
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.2e-57 Score=447.03 Aligned_cols=289 Identities=26% Similarity=0.301 Sum_probs=243.9
Q ss_pred HcHHHHHHHHHHHHHHcCc-ccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC-
Q 019692 29 LHKGAIQLALAQLLVRNKV-KSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG- 105 (337)
Q Consensus 29 ~~~~~l~~~l~~~~~~~~~-~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~- 105 (337)
.+|.|+. .+|...+|. +++++|++++++ ++|.++|||++|++.+++.+.|++ ++.+++.+|+++++.+...
T Consensus 3 ~lP~~fv---~~~~~~lg~~ee~~~~l~a~~~---~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~ 76 (470)
T PRK11933 3 YLPDAFL---TQMREAMPSHLSMDDFIAACQR---PLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDD 76 (470)
T ss_pred cChHHHH---HHHHHHhCCcHHHHHHHHHcCC---CCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCc
Confidence 3566664 466666776 578999999984 779999999999999999998876 7889999999999988642
Q ss_pred ---CCCCCchhhhcCeEEEechhhHHHHHHh--CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 106 ---CDLHVHPLIVNGCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 106 ---~~~~~~~~~~~G~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
..+..++.|..|.+++||++||+++.++ ++++|++|||+|||||+||+++|+++++.|.|+|+|+++.|++.+++
T Consensus 77 ~~~~~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~ 156 (470)
T PRK11933 77 EDALPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA 156 (470)
T ss_pred cccCCcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 2478899999999999999999999999 88999999999999999999999999988999999999999999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 181 ~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
|++++|+.||.+++.|+..+....+ ..||+|++||||||+|+++|+|+.++ .|+++++.+++.+|++|
T Consensus 157 nl~r~G~~nv~v~~~D~~~~~~~~~--~~fD~ILvDaPCSG~G~~rk~p~~~~----------~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 157 NISRCGVSNVALTHFDGRVFGAALP--ETFDAILLDAPCSGEGTVRKDPDALK----------NWSPESNLEIAATQREL 224 (470)
T ss_pred HHHHcCCCeEEEEeCchhhhhhhch--hhcCeEEEcCCCCCCcccccCHHHhh----------hCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654332 46999999999999999999998754 25899999999999999
Q ss_pred HHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCC-cEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 261 LRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFG-FQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 261 L~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
|++|++++++ |+|||||||++++|||+||++||+ ++++ +++.+.-..|..........-++||+||.+++.|+|+
T Consensus 225 L~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 301 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE--TYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFV 301 (470)
T ss_pred HHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHH--HCCCcEEeccccccccccccccCCCCeEEECCCCCCCcceee
Confidence 9999999887 999999999999999999999996 3555 3343221123211100011123799999999999996
No 3
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=9.6e-56 Score=410.68 Aligned_cols=269 Identities=33% Similarity=0.502 Sum_probs=227.4
Q ss_pred HHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCe--EEeCCCCCCCCchhhhcCeEEEechhhHHH
Q 019692 53 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDL--LILPPGCDLHVHPLIVNGCVFLQGKASSMV 129 (337)
Q Consensus 53 ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~ 129 (337)
+|++++ .++|.|+|||++|++.+++.+.|++ ++.+++.++.++. +.......+..++.|++|++++||.+|+++
T Consensus 1 il~~~n---~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~ 77 (283)
T PF01189_consen 1 ILEANN---CPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLV 77 (283)
T ss_dssp HHHHCT---S--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHH
T ss_pred CccccC---CCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccc
Confidence 456666 4789999999999999999999987 8889999988988 444555678899999999999999999999
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
+.+|++++|+.|||+||||||||+++++++.+.|.|+|+|++..++..++++++++|+.+|.++..|+....+... ...
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~-~~~ 156 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP-ESK 156 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH-TTT
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc-ccc
Confidence 9999999999999999999999999999999899999999999999999999999999999999899887643221 135
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC----CC-cEEEEEcCCCCccc
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP----GV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~----~~-G~lvYsTCS~~~~E 284 (337)
||.|++||||||+|+++++|+.+|. ++++++..++.+|++||++|++++ ++ |+|||||||++++|
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWR----------RSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHH----------E-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred cchhhcCCCccchhhhhhccchhhc----------ccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 9999999999999999999998652 267899999999999999999999 86 99999999999999
Q ss_pred CHHHHHHHhchhcCCCcEEecCCCCCCcchhhc--ccceeeeeecCCCCCCCCCC
Q 019692 285 NEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF--LKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 285 Ne~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~p~~~~~~~~~~ 337 (337)
||+||+.||+ ++++|++++....+...+... .....+|++||.|.++|+|+
T Consensus 227 NE~vV~~fl~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFi 279 (283)
T PF01189_consen 227 NEEVVEKFLK--RHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFI 279 (283)
T ss_dssp THHHHHHHHH--HSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEE
T ss_pred HHHHHHHHHH--hCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEE
Confidence 9999999996 477899876433333332210 11223799999999999995
No 4
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.5e-52 Score=408.88 Aligned_cols=308 Identities=23% Similarity=0.317 Sum_probs=254.9
Q ss_pred hhhccccCCCCCCCc-hHHHHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHc
Q 019692 7 IGLHTNLRHPLWPVG-DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG 85 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~ 85 (337)
..++|.|++..++.. +..+.-..+|.|+ ..+|...+|.+..++++++++ .++|+++|||++|++.+++.+.|+
T Consensus 110 ~fVNaVLr~~~r~~~~~~l~~~~s~P~wl---~~~~~~~~g~~~~~~~~~~~~---~~~~~~~RvN~~k~~~~~~~~~l~ 183 (431)
T PRK14903 110 KLVNAVLRRLRTVPEPKELHLKYSHPKWL---VNYWRSFLPEEAVLRIMEWNQ---EPLPTMLRVNSLAITREEVIKILA 183 (431)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcCcHHH---HHHHHHHcCHHHHHHHHHHhc---CCCCeeEEeeCCcCCHHHHHHHHH
Confidence 345666666554322 1122345678877 558888889888999999988 477999999999999999999986
Q ss_pred c-CCceeecCCCCCeEEeCC-CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCC
Q 019692 86 K-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 163 (337)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g 163 (337)
+ ++.+++++++|+++.+.. ...+..++.|++|.+++||.+|++++.++++++|++|||+|||||+||++++.++++.+
T Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g 263 (431)
T PRK14903 184 EEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQG 263 (431)
T ss_pred HCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCC
Confidence 5 888999999999998865 34578899999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCC
Q 019692 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD 243 (337)
Q Consensus 164 ~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~ 243 (337)
+|+|+|+++.+++.+++|++++|+.+|+++++|+..++... .++||.|++||||||+|+++++||.+|.
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~--~~~fD~Vl~DaPCsg~G~~~~~p~~~~~--------- 332 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV--QDTFDRILVDAPCTSLGTARNHPEVLRR--------- 332 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh--hccCCEEEECCCCCCCccccCChHHHHh---------
Confidence 99999999999999999999999988999999998765322 2579999999999999999999997652
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCC---CCCCcchhhccc
Q 019692 244 PTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPF---PNGTAEASQFLK 319 (337)
Q Consensus 244 ~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 319 (337)
++++++..++.+|+++|.+|++++++ |.|||||||++++|||+||++||+ ++++|++...- ..+...+. . .
T Consensus 333 -~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~--~~~~~~~~~~~~~~~~~~~~~~-~-~ 407 (431)
T PRK14903 333 -VNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY--EQKDAEVIDIRDKLEEFEVEGI-W-D 407 (431)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH--hCCCcEEecccccccccccccc-c-C
Confidence 37889999999999999999999886 899999999999999999999995 47788875431 11111111 0 0
Q ss_pred ceeeeeecCCCCCCCCCC
Q 019692 320 ALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 320 ~~~~~f~p~~~~~~~~~~ 337 (337)
....++.|+. .+.|+|+
T Consensus 408 ~~~~~~~P~~-~~dGFf~ 424 (431)
T PRK14903 408 GYGFLMLPDE-TLTPFYV 424 (431)
T ss_pred CCcEEECcCC-CCCcEEE
Confidence 1125899986 6789985
No 5
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-51 Score=405.27 Aligned_cols=278 Identities=27% Similarity=0.391 Sum_probs=245.2
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG 105 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~ 105 (337)
...+|.|+ ..+|...+|.+.+++++++++ .++|+++|||++|++.+++.+.|++ |+.+++.+++|+++.+...
T Consensus 146 ~~s~P~wl---~~~~~~~~g~~~~~~~~~~~~---~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 219 (434)
T PRK14901 146 LHSFPDWL---VKLWLEWLGLEEAEQLCKWFN---QPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGN 219 (434)
T ss_pred HhCCcHHH---HHHHHHHhCHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCC
Confidence 35677777 557788888888899999998 4789999999999999999999876 8899999999999999753
Q ss_pred -CCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 106 -CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 106 -~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
..+..++.|++|++++||.+|++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.+++|+++
T Consensus 220 ~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 220 PGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 019692 185 SGAANIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 263 (337)
Q Consensus 185 ~g~~~v~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 263 (337)
+|+.+|+++++|+..+..... ..++||.|++||||||+|+++++||.+|. ++++++..++.+|.++|.+
T Consensus 300 ~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~ 369 (434)
T PRK14901 300 LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWR----------QTPEKIQELAPLQAELLES 369 (434)
T ss_pred cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhh----------CCHHHHHHHHHHHHHHHHH
Confidence 999999999999987752110 12579999999999999999999998663 2789999999999999999
Q ss_pred HhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 264 ALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 264 A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
|++++++ |+|||||||++++|||++|.+||+ ++++|++... . .+++||.|.++|+|+
T Consensus 370 a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~--~~~~~~~~~~-------------~--~~~~P~~~~~dGfF~ 427 (434)
T PRK14901 370 LAPLLKPGGTLVYATCTLHPAENEAQIEQFLA--RHPDWKLEPP-------------K--QKIWPHRQDGDGFFM 427 (434)
T ss_pred HHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH--hCCCcEecCC-------------C--CccCCCCCCCCcEEE
Confidence 9999887 999999999999999999999995 4778886531 0 128899999999995
No 6
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=3.6e-50 Score=394.19 Aligned_cols=304 Identities=24% Similarity=0.311 Sum_probs=245.7
Q ss_pred hhhccccCCCCCCCch----HH--HHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHH
Q 019692 7 IGLHTNLRHPLWPVGD----AE--KFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA 80 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~ 80 (337)
..++|+|++..++..+ .+ .....+|.|+.+.+... ++ ...+++++++++ ++|+|+|||++|.+.+++
T Consensus 108 ~fVNgVLr~i~r~~~~~~~~~~~l~~~~s~P~wl~~~~~~~---~~-~~~~~~l~~~~~---~~~~~~Rvn~~k~~~~~~ 180 (426)
T TIGR00563 108 GLVNGVLRRFQREQEELLAEFNALDARYLHPEWLVKRLQKA---YP-GQWQSICEANNQ---RPPMWLRINRTKHSRDEW 180 (426)
T ss_pred hhHHHHHHHHhhcchhhcchhHhHHHHcCCCHHHHHHHHHH---hH-HHHHHHHHHhCC---CCCeEEEEcCCcCCHHHH
Confidence 4567877776665322 11 12346677775544333 32 356789999884 779999999999999999
Q ss_pred HHHHcc-CCceeecCCCCCeEEeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHc
Q 019692 81 VLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 159 (337)
Q Consensus 81 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~ 159 (337)
.+.|++ |+.+.+++++|+++.+.....+..++.|++|++++||.+|++++..+++++|++|||+|||||++|+++++.+
T Consensus 181 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~ 260 (426)
T TIGR00563 181 LALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA 260 (426)
T ss_pred HHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc
Confidence 999876 7888999999999998765568889999999999999999999999999999999999999999999999988
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCC
Q 019692 160 KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS 238 (337)
Q Consensus 160 ~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~ 238 (337)
+ .++|+|+|+++.+++.+++|++++|+.. +++..+|........ ...+||+|++||||||+|+++++|+..|.
T Consensus 261 ~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-~~~~fD~VllDaPcSg~G~~~~~p~~~~~---- 334 (426)
T TIGR00563 261 P-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-ENEQFDRILLDAPCSATGVIRRHPDIKWL---- 334 (426)
T ss_pred C-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-cccccCEEEEcCCCCCCcccccCcchhhc----
Confidence 5 6899999999999999999999999872 344667765443211 12579999999999999999999998653
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhc
Q 019692 239 GHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF 317 (337)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (337)
++++++.+++.+|.++|.+|.+++++ |.|||||||++++|||++|++||+ .+++|++... ..... .
T Consensus 335 ------~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~--~~~~~~~~~~---~~~~~--~ 401 (426)
T TIGR00563 335 ------RKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ--EHPDFPFEKT---GTPEQ--V 401 (426)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH--hCCCCeeccC---CCccc--c
Confidence 27899999999999999999998886 999999999999999999999995 4667765431 00010 0
Q ss_pred ccceeeeeecCCCCCCCCCC
Q 019692 318 LKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 318 ~~~~~~~f~p~~~~~~~~~~ 337 (337)
..-.+++.|+.+.+.|+|+
T Consensus 402 -~~~~~~~~P~~~~~dGff~ 420 (426)
T TIGR00563 402 -RDGGLQILPHAEEGDGFFY 420 (426)
T ss_pred -CCCcEEECCCCCCCCCeEE
Confidence 1113799999999999996
No 7
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=4.1e-50 Score=370.28 Aligned_cols=254 Identities=28% Similarity=0.343 Sum_probs=213.5
Q ss_pred EEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCC-CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeec
Q 019692 68 VRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 145 (337)
Q Consensus 68 ~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ 145 (337)
+|||++|++.+++.+.|++ ++.+++.. .|+.+.+.. ...+..++.|++|++++||.+|++++.++++++|++|||+|
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ 79 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMA 79 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEEC
Confidence 5999999999999999976 77776654 466666653 33588999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCcccc
Q 019692 146 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 225 (337)
Q Consensus 146 aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~ 225 (337)
||||++|+++++++++.+.|+|+|+++.+++.+++|++++|+.+|.+++.|+..+... ...||+|++||||||+|++
T Consensus 80 ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 80 AAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEEcCCCCCCccc
Confidence 9999999999999987889999999999999999999999998999999998776433 2469999999999999999
Q ss_pred CcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 226 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 226 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
+++|+.+|. ++++++..++.+|.++|++|++++++ |.|||||||++++|||+||++||+ .++++.+.
T Consensus 157 ~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~--~~~~~~~~ 224 (264)
T TIGR00446 157 RKDPSRKKN----------WSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE--KRPDVVEE 224 (264)
T ss_pred ccChhhhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH--hCCCcEEe
Confidence 999987552 37899999999999999999999886 999999999999999999999995 35667654
Q ss_pred cCCCC--CCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 305 TPFPN--GTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 305 ~~~~~--~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
...+. |..........-++|+.||.|+|+|+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 259 (264)
T TIGR00446 225 LPKGDEFFGANKGKEEVKGALRVFPQIYDCEGFFV 259 (264)
T ss_pred ccCCcccccccccccccCCeEEECCCCCCCCcEEE
Confidence 22111 1111101011224799999999999996
No 8
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=3.9e-50 Score=375.74 Aligned_cols=271 Identities=27% Similarity=0.384 Sum_probs=228.8
Q ss_pred HHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHc-cCCceee-cCCCCCeEEe-CCCCCCCCchhhhcCeEEEechhhHH
Q 019692 52 DLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG-KQFVVQK-DDLVPDLLIL-PPGCDLHVHPLIVNGCVFLQGKASSM 128 (337)
Q Consensus 52 ~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~Qd~ss~l 128 (337)
++++.+..+..+.|+++|.||+|.-..+....|. .++...+ ..|..-++.+ .+...+..++.|..|++.+|+.+|.+
T Consensus 153 ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~L 232 (460)
T KOG1122|consen 153 EVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFL 232 (460)
T ss_pred HHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCcccc
Confidence 3344444444688999999999987766666654 4655433 3466556654 44567889999999999999999999
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
++.+|+|+||++||||||+|||||+++|.+|.+.|.|+|.|.+..+++.++.|+.++|+.|..+++.|...++.... ..
T Consensus 233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~-~~ 311 (460)
T KOG1122|consen 233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF-PG 311 (460)
T ss_pred eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999988764332 13
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENED 287 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~ 287 (337)
+||+||+|+||||+|++.|.+...+. .+.+++.+++.+|+++|.+|..++++ |.|||||||+.++|||+
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~----------k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTN----------KTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ccceeeecCCCCCCcccccccccccc----------hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 79999999999999999887665432 26899999999999999999999986 89999999999999999
Q ss_pred HHHHHhchhcCCCcEEecCCCCCCcch--------hhcccceeeeeecCCCCCCCCCC
Q 019692 288 VIKSVLPIAMSFGFQLATPFPNGTAEA--------SQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 288 vv~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
||+++|. +++.+++++.-+.|+..| +..+.. -||+||.|+-+|+|+
T Consensus 382 vV~yaL~--K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~--~r~yPh~hnmdgffv 435 (460)
T KOG1122|consen 382 VVDYALK--KRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLT--RRFYPHVHNMDGFFV 435 (460)
T ss_pred HHHHHHH--hCCceEeccccccCCCCCcccCcccCcchhhe--eeecCcccCCchHHH
Confidence 9999995 578899998888888877 333222 699999999999985
No 9
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.4e-48 Score=381.49 Aligned_cols=290 Identities=28% Similarity=0.418 Sum_probs=248.5
Q ss_pred HHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCC
Q 019692 26 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP 104 (337)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~ 104 (337)
....+|.|+. .+|...+|.+.+++++++++ .++|+|+|||++|.+.+++.+.|++ ++.++++++.|+++.++.
T Consensus 145 ~~~~~P~w~~---~~~~~~~g~~~~~~~l~~~~---~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 218 (444)
T PRK14902 145 IKYSHPVWLV---KRWIDQYGEEKAEKILESLN---EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEK 218 (444)
T ss_pred HHhCChHHHH---HHHHHHhCHHHHHHHHHHcC---CCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeC
Confidence 3456777774 46667778888999999988 4779999999999999999988876 788999999999999986
Q ss_pred CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 105 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 105 ~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
..+..++.|++|.+++||.+|++++.++++++|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.+++|+++
T Consensus 219 -~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 219 -GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred -CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 019692 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 264 (337)
Q Consensus 185 ~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A 264 (337)
+|+.+|+++++|+.++..... ++||+|++||||||+|+++++|+..|. ++++++..++.+|.++|.+|
T Consensus 298 ~g~~~v~~~~~D~~~~~~~~~--~~fD~Vl~D~Pcsg~G~~~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a 365 (444)
T PRK14902 298 LGLTNIETKALDARKVHEKFA--EKFDKILVDAPCSGLGVIRRKPDIKYN----------KTKEDIESLQEIQLEILESV 365 (444)
T ss_pred cCCCeEEEEeCCcccccchhc--ccCCEEEEcCCCCCCeeeccCcchhhc----------CCHHHHHHHHHHHHHHHHHH
Confidence 999889999999987643322 579999999999999999999987653 26889999999999999999
Q ss_pred hCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchh-hcccceeeeeecCCCCCCCCCC
Q 019692 265 LSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEAS-QFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 265 ~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
.+++++ |.|||||||++++|||.+|.++++ .+++|++++....+..... .. ..-++|+.||.|.+.|+|+
T Consensus 366 ~~~LkpGG~lvystcs~~~~Ene~vv~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~P~~~~~dGfF~ 437 (444)
T PRK14902 366 AQYLKKGGILVYSTCTIEKEENEEVIEAFLE--EHPEFELVPLQHEKPDELVYEV-KDGYLQILPNDYGTDGFFI 437 (444)
T ss_pred HHHcCCCCEEEEEcCCCChhhhHHHHHHHHH--hCCCcEEecccccccccccccc-cCCeEEECCCCCCCCCeEE
Confidence 998886 899999999999999999999995 3567888764333322100 01 1123799999999999996
No 10
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.5e-47 Score=375.60 Aligned_cols=299 Identities=24% Similarity=0.282 Sum_probs=246.5
Q ss_pred hhccccCCCCCCCchH-------HHHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHH
Q 019692 8 GLHTNLRHPLWPVGDA-------EKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA 80 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~ 80 (337)
.++|.|++..++...+ ......+|.|+...+ ...++ +.+++++++++ .++|+|+|||++|++.+++
T Consensus 114 fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~---~~~~~-~~~~~~~~~~~---~~~~~~~Rvn~~k~~~~~~ 186 (427)
T PRK10901 114 LVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRL---KKAYP-EQWQAILAANN---QRPPMWLRVNRRHHSRDAY 186 (427)
T ss_pred hHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHH---HHHhH-HHHHHHHHHcC---CCCCeEEEEcCCCCCHHHH
Confidence 4566666655432221 112356777775544 44443 45788999988 4779999999999999999
Q ss_pred HHHHcc-CCceeecCCCCCeEEeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHc
Q 019692 81 VLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 159 (337)
Q Consensus 81 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~ 159 (337)
.+.|++ ++.+++++++|+++.++....+..++.|++|.+++||.+|++++.++++++|++|||+|||+|++|+++++.+
T Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~ 266 (427)
T PRK10901 187 LALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELA 266 (427)
T ss_pred HHHHHhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc
Confidence 999876 7889999999999999765568889999999999999999999999999999999999999999999999987
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCC
Q 019692 160 KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239 (337)
Q Consensus 160 ~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~ 239 (337)
.+ ++|+|+|+++.+++.+++|++++|+. ++++++|+.+...... ..+||.|++||||||+|+++++|+..|.
T Consensus 267 ~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~-~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~----- 338 (427)
T PRK10901 267 PQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWD-GQPFDRILLDAPCSATGVIRRHPDIKWL----- 338 (427)
T ss_pred CC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcc-cCCCCEEEECCCCCcccccccCcccccc-----
Confidence 44 79999999999999999999999986 7899999987543211 2579999999999999999999997653
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcc
Q 019692 240 HTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFL 318 (337)
Q Consensus 240 ~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (337)
.+++++.+++.+|.++|.+|.+++++ |.+||||||++++|||++|..+++ ++++|++.+... . ..
T Consensus 339 -----~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~--~~~~~~~~~~~~-~------~~ 404 (427)
T PRK10901 339 -----RRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA--RHPDAELLDTGT-P------QQ 404 (427)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH--hCCCCEEecCCC-C------CC
Confidence 26889999999999999999999886 899999999999999999999995 467888765311 1 01
Q ss_pred cceeeeeecCCCCCCCCCC
Q 019692 319 KALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 319 ~~~~~~f~p~~~~~~~~~~ 337 (337)
.. +++.|+.|.++|+|+
T Consensus 405 ~~--~~~~P~~~~~dGff~ 421 (427)
T PRK10901 405 PG--RQLLPGEEDGDGFFY 421 (427)
T ss_pred Cc--eEECCCCCCCCCeEE
Confidence 12 699999999999995
No 11
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.1e-46 Score=366.05 Aligned_cols=286 Identities=26% Similarity=0.360 Sum_probs=234.5
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG 105 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~ 105 (337)
...+|.|+ ..+|...+|.+.+++++++++ .++|+++|||+++.+.+++.+.|.. ++.+.+.++ + .+.+...
T Consensus 148 ~~s~P~wl---~~~~~~~~g~~~~~~~~~~~~---~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~ 219 (445)
T PRK14904 148 LYSHPEWL---LERWIARYGEERTEAMLSYNN---QAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGL-P-NFFLSKD 219 (445)
T ss_pred HhCCCHHH---HHHHHHHhChHHHHHHHHHhC---CCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCc-c-eEEEecc
Confidence 35678887 457778888888899999988 4679999999999999999998865 777766654 4 3444422
Q ss_pred CCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 106 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 106 ~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
.....+.|..|.+++||+++++++.++++.+|++|||+|||+|++|.++++.+++.++|+|+|+++.+++.++++++++
T Consensus 220 -~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 220 -FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred -ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence 1222379999999999999999999999999999999999999999999998877789999999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 186 g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
|+.+|+++++|+..+.+ ...||+|++||||||+|+++|+||..|. ++++++..++..|.++|.+|.
T Consensus 299 g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~ 364 (445)
T PRK14904 299 GITIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWK----------LTPEKLAELVGLQAELLDHAA 364 (445)
T ss_pred CCCeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhc----------CCHHHHHHHHHHHHHHHHHHH
Confidence 99899999999987652 2479999999999999999999998653 268999999999999999999
Q ss_pred CCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhh-cccceeeeeecCCC-CCCCCCC
Q 019692 266 SFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ-FLKALSIYFEPIQW-KTKKAFL 337 (337)
Q Consensus 266 ~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~p~~~-~~~~~~~ 337 (337)
+++++ |.|||+|||++++|||+||++||+ .+++|+.......+...-.. ....-..++.|+.+ .++|+|+
T Consensus 365 ~~lkpgG~lvystcs~~~~Ene~~v~~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~ 437 (445)
T PRK14904 365 SLLKPGGVLVYATCSIEPEENELQIEAFLQ--RHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFA 437 (445)
T ss_pred HhcCCCcEEEEEeCCCChhhHHHHHHHHHH--hCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEE
Confidence 99886 999999999999999999999996 46677764421111110000 00111268999988 7899995
No 12
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.8e-41 Score=309.96 Aligned_cols=303 Identities=37% Similarity=0.554 Sum_probs=248.9
Q ss_pred chHHHHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-C---------Cce
Q 019692 21 GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-Q---------FVV 90 (337)
Q Consensus 21 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~---------~~~ 90 (337)
.++.....+++..+.....+-..+.++.+.+++.-.. . .+.|+|+|+||++.+.++.+..|.. . -.+
T Consensus 90 ~el~~~~~~~~~e~~~~~v~~~~k~~~~~~~~l~~t~--~-~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~ 166 (413)
T KOG2360|consen 90 RELKVIRLRLILRLKIETVMLKKKRKVKSLRELKLTM--K-IPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEF 166 (413)
T ss_pred chhhhhhHHHHhhhHHHHHHHHhhhhHHHHHHhhccC--C-CCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcce
Confidence 3555555666666666555555556666666665542 2 5889999999999999998887754 1 235
Q ss_pred eecCCCCCeEEeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeC
Q 019692 91 QKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 170 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~ 170 (337)
.-|++.++.+.+++...+..+++|++|.+++||.+|+++++.|++.+|++|+|+||+||.||.|+|..+.+.++|+|+|.
T Consensus 167 ~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~ 246 (413)
T KOG2360|consen 167 YVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFER 246 (413)
T ss_pred eccccchhhcccCCCcceeeccccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhh
Confidence 56888899999987777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHH
Q 019692 171 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 250 (337)
Q Consensus 171 ~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~ 250 (337)
+..+.+.++..+...|+++++.+.+|+... ..+..+..+..||+||+|||+|+..|.-...- .....++++
T Consensus 247 d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~--------~e~~~~~rL 317 (413)
T KOG2360|consen 247 DAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQDEDPG--------AETESPERL 317 (413)
T ss_pred hhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccceeeccC--------CCcccHHHH
Confidence 999999999999999999999999999987 55555778899999999999999865322110 112368999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhchhcCCC-cEEec--CCCCCCcchhhcc--cceeeee
Q 019692 251 NKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG-FQLAT--PFPNGTAEASQFL--KALSIYF 325 (337)
Q Consensus 251 ~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~--~~~~~~f 325 (337)
..|+.+|..++.+|+.+++..++||||||++.+|||.||+++|.. ++. +.+.+ ..|.|.++|..-. -..++|=
T Consensus 318 ~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~--~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~ 395 (413)
T KOG2360|consen 318 ENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ--NPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRA 395 (413)
T ss_pred HHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhh--ChhHhhhchhhcchhhhhcCCccccccccceec
Confidence 999999999999999998889999999999999999999999953 344 44444 7899999885321 1245899
Q ss_pred ecCCCCCCCCCC
Q 019692 326 EPIQWKTKKAFL 337 (337)
Q Consensus 326 ~p~~~~~~~~~~ 337 (337)
.|..+-|.|+|+
T Consensus 396 ~p~~~~~~gffv 407 (413)
T KOG2360|consen 396 SPKSTLTIGFFV 407 (413)
T ss_pred ccCCCCcceEEE
Confidence 999999999995
No 13
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-36 Score=279.68 Aligned_cols=237 Identities=28% Similarity=0.360 Sum_probs=188.4
Q ss_pred cccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc------------C--Cc-eeecCCCCCeEEeCCCC-----
Q 019692 47 VKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK------------Q--FV-VQKDDLVPDLLILPPGC----- 106 (337)
Q Consensus 47 ~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~------------~--~~-~~~~~~~~~~~~~~~~~----- 106 (337)
..+.+++++.++ .+.|..+|+.......+++...+++ + ++ ....+|.|+.+.++...
T Consensus 39 ~~e~~~~~~~ir---~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~ 115 (375)
T KOG2198|consen 39 EDEFGDFWETIR---KPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEI 115 (375)
T ss_pred hHHHHHHHHHHH---hccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCccccc
Confidence 466788888887 4778899988776666665544433 2 21 34567778877765431
Q ss_pred ----CCCCc-----hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC---CCEEEEEeCCHHH
Q 019692 107 ----DLHVH-----PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKER 174 (337)
Q Consensus 107 ----~~~~~-----~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~g~V~avD~~~~~ 174 (337)
.+.+. ....-|.++.||.+|++++.+|+++||++||||||+||+||+++.+.+.. .|.|+|.|.+..|
T Consensus 116 r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R 195 (375)
T KOG2198|consen 116 RKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKR 195 (375)
T ss_pred ccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHH
Confidence 11122 23356889999999999999999999999999999999999999887642 3699999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHH
Q 019692 175 VRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEME 248 (337)
Q Consensus 175 l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~ 248 (337)
+..+++.+++....++.+.+.|+..++... ..+..||.||||+||||.|++++.+++... .|+.+
T Consensus 196 ~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~---------~w~~~ 266 (375)
T KOG2198|consen 196 LNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKE---------GWKTQ 266 (375)
T ss_pred HHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhh---------hhhhh
Confidence 999999998887778888888887766441 234689999999999999999998886321 13455
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 249 RLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 249 ~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
+-..|..+|.+||.++++++++ |.|||||||++|.|||+||+.+|+.
T Consensus 267 ~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~ 314 (375)
T KOG2198|consen 267 RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQK 314 (375)
T ss_pred hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHH
Confidence 5568999999999999999987 9999999999999999999999964
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.67 E-value=4.5e-16 Score=151.03 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=116.5
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
...+++|.|..|.....++.... +|.+|||+|||+|+.+++++. .+..+|+++|+|+.+++.+++|++.+|++
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 45779999999988887776653 588999999999998876553 45569999999999999999999999985
Q ss_pred cEEEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 189 NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
+++++++|+.++.... ....+||.|++|||+... +.+.+.....-...++..|+++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-----------------------~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-----------------------NKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-----------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence 6999999987754221 012479999999996431 1223334444567888889998
Q ss_pred CCC-cEEEEEcCCCCccc--CHHHHHHHh
Q 019692 268 PGV-ERVVYSTCSIHQVE--NEDVIKSVL 293 (337)
Q Consensus 268 ~~~-G~lvYsTCS~~~~E--Ne~vv~~~l 293 (337)
+++ |.++++|||-+-.+ =.++|.+..
T Consensus 329 Lk~gG~lv~~scs~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 329 LNPGGILLTFSCSGLMTSDLFQKIIADAA 357 (396)
T ss_pred cCCCeEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 886 89999999955543 344444443
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.62 E-value=8.3e-16 Score=147.61 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=121.5
Q ss_pred hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--c
Q 019692 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--N 189 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~--~ 189 (337)
...++|.|..|..+...+...+. |.+|||++|.||+.|++.|. ++..+|++||+|...++.+++|++.+|+. .
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 46689999999999998888764 99999999999999998766 46669999999999999999999999985 3
Q ss_pred EEEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 190 IEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
+.++++|+.++..... ...+||+|++||| .+.++ ++...+..+-..+++..+++++
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-----sF~r~------------------k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPP-----SFARS------------------KKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCc-----ccccC------------------cccchhHHHHHHHHHHHHHHHc
Confidence 8999999887654432 1248999999999 34332 2233567777889999999998
Q ss_pred CC-cEEEEEcCCCCcccCH
Q 019692 269 GV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~ENe 286 (337)
++ |.++.||||-+-...+
T Consensus 327 ~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 327 APGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred CCCCEEEEEecCCccCHHH
Confidence 87 9999999998887763
No 16
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.2e-15 Score=143.22 Aligned_cols=130 Identities=24% Similarity=0.367 Sum_probs=102.6
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+++..++++|||++||.|++|+++|.. ..+|+|+|+++++++.|++|++.+|+.|+++..+|++++.........
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 44567778899999999999999999965 479999999999999999999999999999999999988766432347
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv 289 (337)
+|.|++|||.+|.+ .++++...++ ++.+|||++| |..-.
T Consensus 363 ~d~VvvDPPR~G~~----------------------------------~~~lk~l~~~-~p~~IvYVSC------NP~Tl 401 (432)
T COG2265 363 PDVVVVDPPRAGAD----------------------------------REVLKQLAKL-KPKRIVYVSC------NPATL 401 (432)
T ss_pred CCEEEECCCCCCCC----------------------------------HHHHHHHHhc-CCCcEEEEeC------CHHHH
Confidence 89999999999875 2455555555 4479999999 55555
Q ss_pred HHHhchhcCCCcEE
Q 019692 290 KSVLPIAMSFGFQL 303 (337)
Q Consensus 290 ~~~l~~~~~~~~~~ 303 (337)
.+-+..-.+.++++
T Consensus 402 aRDl~~L~~~gy~i 415 (432)
T COG2265 402 ARDLAILASTGYEI 415 (432)
T ss_pred HHHHHHHHhCCeEE
Confidence 55554333445444
No 17
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.8e-14 Score=125.34 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=119.1
Q ss_pred hhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EE
Q 019692 113 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IE 191 (337)
Q Consensus 113 ~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~ 191 (337)
.++.+.-++-.+.+.+++..+++.||++|+|+|.|+|..|..||..+++.|+|+.+|+.++.++.|++|++..|+.+ |+
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~ 149 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT 149 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence 36667667777778888889999999999999999999999999999999999999999999999999999999977 99
Q ss_pred EEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-
Q 019692 192 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV- 270 (337)
Q Consensus 192 ~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~- 270 (337)
+..+|+.+.... ..||+|++|.| .| -+.|+++.+.+++
T Consensus 150 ~~~~Dv~~~~~~----~~vDav~LDmp---------~P----------------------------W~~le~~~~~Lkpg 188 (256)
T COG2519 150 LKLGDVREGIDE----EDVDAVFLDLP---------DP----------------------------WNVLEHVSDALKPG 188 (256)
T ss_pred EEeccccccccc----cccCEEEEcCC---------Ch----------------------------HHHHHHHHHHhCCC
Confidence 999999876543 37999999999 22 2679999998886
Q ss_pred c-EEEEEcCCCCcccCHHHHHHHhchhcCCCcEE
Q 019692 271 E-RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQL 303 (337)
Q Consensus 271 G-~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~ 303 (337)
| .++|+.|. ++|++.++..+..||.-
T Consensus 189 g~~~~y~P~v-------eQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 189 GVVVVYSPTV-------EQVEKTVEALRERGFVD 215 (256)
T ss_pred cEEEEEcCCH-------HHHHHHHHHHHhcCccc
Confidence 3 78888887 56666665444556654
No 18
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.55 E-value=2.5e-14 Score=135.43 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=73.4
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
.+...++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|++|++++++|+.++.... ...||
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~--~~~~D 242 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ--GEVPD 242 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--CCCCe
Confidence 344346789999999999999999884 3689999999999999999999999988999999998764322 14699
Q ss_pred EEEECCCCCCcc
Q 019692 212 AILLDPSCSGSG 223 (337)
Q Consensus 212 ~IlvDpPCSg~G 223 (337)
.|++|||++|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999988754
No 19
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.55 E-value=3.5e-14 Score=147.51 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=114.9
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
....++|.|..|.....++.... +|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++
T Consensus 515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 35568899999988888777654 4889999999999999998874 4458999999999999999999999986
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
+++++++|+.++.... ..+||+|++|||+.+.+- . .+++....+.+.+++..+.+++
T Consensus 590 ~v~~i~~D~~~~l~~~--~~~fDlIilDPP~f~~~~---~------------------~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 590 QHRLIQADCLAWLKEA--REQFDLIFIDPPTFSNSK---R------------------MEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred ceEEEEccHHHHHHHc--CCCcCEEEECCCCCCCCC---c------------------cchhhhHHHHHHHHHHHHHHHc
Confidence 6999999987653221 257999999999775421 1 1112234455778899999988
Q ss_pred CC-cEEEEEcCCCCcccC
Q 019692 269 GV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~EN 285 (337)
++ |.+++++|+-+....
T Consensus 647 ~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 647 RPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred CCCCEEEEEeCCccCChh
Confidence 86 888899998766654
No 20
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.54 E-value=4.4e-15 Score=137.50 Aligned_cols=144 Identities=22% Similarity=0.260 Sum_probs=104.3
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
....++|.|..|.....++.... .|.+|||++|.+|+++++.+. ++..+|++||.|...++.+++|++.+|++
T Consensus 100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 44678999999999999988764 488999999999999987654 56668999999999999999999999974
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
.++++..|+.+........++||+|++|||-..-|. +. +.+-..+++..+++++
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------------------~~------~~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------------------FD------LERDYKKLLRRAMKLL 228 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------------------CE------HHHHHHHHHHHHHHTE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------------------HH------HHHHHHHHHHHHHHhc
Confidence 699999998764322111358999999999442110 01 2344678999999998
Q ss_pred CC-cEEEEEcCCCCcccC
Q 019692 269 GV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~EN 285 (337)
++ |.|+.+|||-+-..+
T Consensus 229 ~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 229 KPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEEEEEE--TTS-HH
T ss_pred CCCCEEEEEcCCcccCHH
Confidence 87 899999999887765
No 21
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=1.3e-13 Score=131.40 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=99.4
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.++.++.+++|+.|||.|||+|+.+..++.. ...|+|+|+++.+++.++.|++.+|+.++.++++|+.+++...
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~--- 246 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS--- 246 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc---
Confidence 3445567889999999999999988776553 4789999999999999999999999988999999999876542
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
++||.|++||||....... ......++.++|..+.+.+++ |.++|.+++-.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~-----------------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAA-----------------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred CCCCEEEECCCCcCccccc-----------------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 5799999999986432110 012346678999999998776 89999888743
No 22
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.51 E-value=4.4e-13 Score=115.27 Aligned_cols=137 Identities=23% Similarity=0.327 Sum_probs=107.7
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
..+-..+....|.+++|++++|+|||+|+.|..++ ++.+.++|||+|.++++++..++|++++|++|++++.+|+-+..
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 34456677778999999999999999999999999 66889999999999999999999999999999999999987776
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
... .+||+||+- |+|. ...+|+.++..+++ |+||-- .
T Consensus 98 ~~~---~~~daiFIG----Gg~~--------------------------------i~~ile~~~~~l~~ggrlV~n---a 135 (187)
T COG2242 98 PDL---PSPDAIFIG----GGGN--------------------------------IEEILEAAWERLKPGGRLVAN---A 135 (187)
T ss_pred cCC---CCCCEEEEC----CCCC--------------------------------HHHHHHHHHHHcCcCCeEEEE---e
Confidence 542 369999984 2221 14789999998876 777753 2
Q ss_pred CcccCHHHHHHHhchhcCCCc-EEe
Q 019692 281 HQVENEDVIKSVLPIAMSFGF-QLA 304 (337)
Q Consensus 281 ~~~ENe~vv~~~l~~~~~~~~-~~~ 304 (337)
...||+...-..+ ++.|+ +++
T Consensus 136 itlE~~~~a~~~~---~~~g~~ei~ 157 (187)
T COG2242 136 ITLETLAKALEAL---EQLGGREIV 157 (187)
T ss_pred ecHHHHHHHHHHH---HHcCCceEE
Confidence 3356666655555 34555 543
No 23
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.50 E-value=6.3e-14 Score=134.45 Aligned_cols=90 Identities=27% Similarity=0.375 Sum_probs=63.4
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD----- 204 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~----- 204 (337)
..+++..++ .|||++||.|.+|+.+|... .+|+|+|+++.+++.|++|++.+|++|++++.+++.++....
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH
Confidence 345666655 89999999999999998864 789999999999999999999999999999988775543210
Q ss_pred --------CCCCCccEEEECCCCCCcc
Q 019692 205 --------PAYSEVRAILLDPSCSGSG 223 (337)
Q Consensus 205 --------~~~~~fD~IlvDpPCSg~G 223 (337)
.....+|.|++|||.+|.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 0012689999999999975
No 24
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5e-13 Score=114.65 Aligned_cols=129 Identities=20% Similarity=0.331 Sum_probs=100.0
Q ss_pred EechhhHHHHH--HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 121 LQGKASSMVAA--ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 121 ~Qd~ss~l~~~--~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
.-+.++.++.. ....-.|.+|+|+|||+|..++..+-+ +..+|+|+|+|+++++.+++|++++ ..+|.++..|+.
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~ 103 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVS 103 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchh
Confidence 33444444433 334456789999999999887755543 5689999999999999999999994 456999999998
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 278 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTC 278 (337)
++. ..||.|+.||| .|+.+++.| +..|..|++. +.+||
T Consensus 104 ~~~------~~~dtvimNPP---FG~~~rhaD---------------------------r~Fl~~Ale~---s~vVY--- 141 (198)
T COG2263 104 DFR------GKFDTVIMNPP---FGSQRRHAD---------------------------RPFLLKALEI---SDVVY--- 141 (198)
T ss_pred hcC------CccceEEECCC---CccccccCC---------------------------HHHHHHHHHh---hheEE---
Confidence 875 56899999999 566677665 4678888776 58999
Q ss_pred CCCcccCHHHHHHHhc
Q 019692 279 SIHQVENEDVIKSVLP 294 (337)
Q Consensus 279 S~~~~ENe~vv~~~l~ 294 (337)
|+|..-+.+.++++.+
T Consensus 142 siH~a~~~~f~~~~~~ 157 (198)
T COG2263 142 SIHKAGSRDFVEKFAA 157 (198)
T ss_pred EeeccccHHHHHHHHH
Confidence 5788889999988874
No 25
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.49 E-value=1.7e-13 Score=135.55 Aligned_cols=89 Identities=28% Similarity=0.386 Sum_probs=74.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~ 209 (337)
..+.+.+|++|||+|||+|..++.++... .+|+|+|+|+.+++.+++|++.+|++|++++++|+.+..... ....+
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 34567789999999999999999998873 689999999999999999999999989999999987643211 01146
Q ss_pred ccEEEECCCCCCc
Q 019692 210 VRAILLDPSCSGS 222 (337)
Q Consensus 210 fD~IlvDpPCSg~ 222 (337)
||+|++|||++|.
T Consensus 368 fD~Vi~dPPr~g~ 380 (443)
T PRK13168 368 FDKVLLDPPRAGA 380 (443)
T ss_pred CCEEEECcCCcCh
Confidence 9999999998874
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.6e-13 Score=122.31 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=97.5
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
....+..+.+.+|++|||+|||||..+..+++..+ .++|+++|+|+.|++.+++.+...|..+|+++.+|++++|..+
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D- 117 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD- 117 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC-
Confidence 34555666677999999999999999999999986 7999999999999999999999999888999999999999776
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
++||+|.+ +.| +|+-+|+ .+.|+.+.+.++| |+++- +.+++-+
T Consensus 118 --~sFD~vt~---~fg---lrnv~d~--------------------------~~aL~E~~RVlKpgG~~~v--le~~~p~ 161 (238)
T COG2226 118 --NSFDAVTI---SFG---LRNVTDI--------------------------DKALKEMYRVLKPGGRLLV--LEFSKPD 161 (238)
T ss_pred --CccCEEEe---eeh---hhcCCCH--------------------------HHHHHHHHHhhcCCeEEEE--EEcCCCC
Confidence 68999986 222 2333221 4789999999888 54443 4445545
Q ss_pred C
Q 019692 285 N 285 (337)
Q Consensus 285 N 285 (337)
+
T Consensus 162 ~ 162 (238)
T COG2226 162 N 162 (238)
T ss_pred c
Confidence 5
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=1.9e-13 Score=118.01 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=94.2
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~ 202 (337)
|.++.+++..+...++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.+++.+++++..|..+...
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 5678788877776688999999999999999999874 445899999999999999999999999889999999876543
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
..+||.|+++||....+ ..-.....++++.|.++|++ |.++.
T Consensus 96 ----~~~fD~Iv~NPP~~~~~---------------------------~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ----DGKFDLIVSNPPFHAGG---------------------------DDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ----TTCEEEEEE---SBTTS---------------------------HCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccceeEEEEccchhccc---------------------------ccchhhHHHHHHHHHHhccCCCEEEE
Confidence 26799999999932211 11234567889999998887 76533
No 28
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.49 E-value=2.3e-13 Score=123.67 Aligned_cols=140 Identities=22% Similarity=0.306 Sum_probs=99.9
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~ 199 (337)
+-.+...++...+++.||++||+.|.|+|..|..|+..+++.|+|+.+|+.+++++.|++|++..|+. +|++.+.|+..
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 33445566777899999999999999999999999999999999999999999999999999999995 69999999864
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-CC-c-EEEEE
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-GV-E-RVVYS 276 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~-~~-G-~lvYs 276 (337)
-.........||.||+|-| .|+ ..|.++.+.+ ++ | ..+||
T Consensus 104 ~g~~~~~~~~~DavfLDlp---------~Pw----------------------------~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDLP---------DPW----------------------------EAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp G--STT-TTSEEEEEEESS---------SGG----------------------------GGHHHHHHHE-EEEEEEEEEE
T ss_pred ccccccccCcccEEEEeCC---------CHH----------------------------HHHHHHHHHHhcCCceEEEEC
Confidence 3221111257999999999 332 3466776666 44 4 56777
Q ss_pred cCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 277 TCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
.|- ++|++.++..+..||..+
T Consensus 147 P~i-------eQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 147 PCI-------EQVQKTVEALREHGFTDI 167 (247)
T ss_dssp SSH-------HHHHHHHHHHHHTTEEEE
T ss_pred CCH-------HHHHHHHHHHHHCCCeee
Confidence 775 666666654444566553
No 29
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.49 E-value=3e-13 Score=133.37 Aligned_cols=89 Identities=31% Similarity=0.366 Sum_probs=73.9
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~ 209 (337)
..+.+.++++|||+|||+|..++.+|... .+|+|+|+++.+++.+++|++.+|++|++++.+|+.+..+.. ....+
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34566778999999999999999999863 689999999999999999999999999999999987643211 01146
Q ss_pred ccEEEECCCCCCc
Q 019692 210 VRAILLDPSCSGS 222 (337)
Q Consensus 210 fD~IlvDpPCSg~ 222 (337)
||+|++|||++|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999998764
No 30
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.48 E-value=6.9e-13 Score=118.78 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=83.0
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....+......+...+++++|++|||+|||+|..+..++...+..++|+++|+++.+++.++++++++|++|++++++|
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 33333433345666778899999999999999999999999876668899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+...... ..+||+|++|+++
T Consensus 137 ~~~~~~~---~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 137 GTQGWEP---LAPYDRIYVTAAG 156 (215)
T ss_pred cccCCcc---cCCCCEEEEcCCc
Confidence 8765432 2579999999874
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.47 E-value=5.5e-13 Score=106.33 Aligned_cols=110 Identities=21% Similarity=0.330 Sum_probs=83.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...+. .+|+++++|+ ...... ..+||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~--~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF--LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT--SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc--CCCCCEEEE
Confidence 68899999999999999999953 458999999999999999999976665 5799999999 322222 256999997
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+. .+....+ .+ ..+.++|+++.+.+++ |.+|.+||
T Consensus 77 ~~-~~~~~~~--------------------------~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL--------------------------PL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC--------------------------HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-Ccccccc--------------------------ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 65 2111111 01 4456778888887776 89999998
No 32
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=1.2e-12 Score=117.95 Aligned_cols=142 Identities=20% Similarity=0.321 Sum_probs=96.4
Q ss_pred CeEEEechhhHHHHHHh---CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019692 117 GCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 193 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~ 193 (337)
|.+..|..+ .+++..+ .+.++++|||+|||+|..+..++.. +..+|+++|+++.+++.+++|++.+|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 445555433 3444333 4678899999999999999988875 345999999999999999999999887 58899
Q ss_pred eccCCCCCCCCCCCCCccEEEECCCCC---CccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 019692 194 HGDFLNLDPKDPAYSEVRAILLDPSCS---GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 270 (337)
Q Consensus 194 ~~D~~~~~~~~~~~~~fD~IlvDpPCS---g~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~ 270 (337)
++|+..... ..+||.|++|||.. ..+...+.++..|.. . ......+..++..+.+++++
T Consensus 90 ~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 90 RGDWARAVE----FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDA----------G----PDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred ECchhhhcc----CCCeeEEEECCCCCCCCcccccccChhHhhhC----------C----CcHHHHHHHHHHHHHHhcCC
Confidence 999876432 25799999999843 333222222111100 0 01224467889999998886
Q ss_pred -cEEEEEcCCC
Q 019692 271 -ERVVYSTCSI 280 (337)
Q Consensus 271 -G~lvYsTCS~ 280 (337)
|.+++.+.+.
T Consensus 152 gG~l~~~~~~~ 162 (223)
T PRK14967 152 GGSLLLVQSEL 162 (223)
T ss_pred CcEEEEEEecc
Confidence 7777644333
No 33
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.47 E-value=3.7e-13 Score=130.23 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=71.0
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
++..++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|+++++++++|+.++.... ..+||.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~ 303 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ--MSAPEL 303 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--CCCCCE
Confidence 33346789999999999999999864 3689999999999999999999999989999999997654322 145999
Q ss_pred EEECCCCCCc
Q 019692 213 ILLDPSCSGS 222 (337)
Q Consensus 213 IlvDpPCSg~ 222 (337)
|++|||..|.
T Consensus 304 vi~DPPr~G~ 313 (374)
T TIGR02085 304 VLVNPPRRGI 313 (374)
T ss_pred EEECCCCCCC
Confidence 9999997653
No 34
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=1.5e-12 Score=115.13 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=99.0
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 202 (337)
+...+....+++.++++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.+|+ .++.++.+|+.+..+
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~ 106 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF 106 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh
Confidence 3345555667889999999999999999999998876678999999999999999999999994 679999999876433
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
.. ...||.|+++.. .. + ...+++.+.+++++ |.+|+.+|++
T Consensus 107 ~~--~~~~D~V~~~~~---~~------~--------------------------~~~~l~~~~~~LkpgG~lv~~~~~~- 148 (198)
T PRK00377 107 TI--NEKFDRIFIGGG---SE------K--------------------------LKEIISASWEIIKKGGRIVIDAILL- 148 (198)
T ss_pred hc--CCCCCEEEECCC---cc------c--------------------------HHHHHHHHHHHcCCCcEEEEEeecH-
Confidence 22 147999998531 00 0 13578888888776 8999888754
Q ss_pred cccCHHHHHHHh
Q 019692 282 QVENEDVIKSVL 293 (337)
Q Consensus 282 ~~ENe~vv~~~l 293 (337)
|+...+...|
T Consensus 149 --~~~~~~~~~l 158 (198)
T PRK00377 149 --ETVNNALSAL 158 (198)
T ss_pred --HHHHHHHHHH
Confidence 3444444445
No 35
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=6.9e-14 Score=112.53 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=87.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
|.+|||+|||+|..+..+++.. ..+++++|+++..++.++.+++..++ .+++++++|+.+...... ..+||+|+.|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-DGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-TT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-CceeEEEEEC
Confidence 6799999999999999998874 58999999999999999999999988 469999999988762221 3689999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
||......... ...+....+++++.+++++ |.+++.+|
T Consensus 78 pP~~~~~~~~~------------------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKA------------------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----------------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccch------------------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99875421110 0111456889999998887 88888876
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=2.3e-12 Score=112.08 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=107.6
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
-+..+.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++.+++ +++++.+|+.+..
T Consensus 4 ~~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~ 79 (179)
T TIGR00537 4 PAEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV 79 (179)
T ss_pred CCccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc
Confidence 34455667677777778899999999999999988852 3899999999999999999998886 5889999986643
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
..+||.|+++||+....--.+..+ +..........-...+..+|+.+.+++++ |.+++.+++.
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGD-----------WLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccc-----------hhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 147999999999753321100000 00000000001134467899999998887 8998887665
Q ss_pred CcccCHHHHHHHhchhcCCCcEEe
Q 019692 281 HQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 281 ~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
. +...+..+|+ ..||...
T Consensus 144 ~---~~~~~~~~l~---~~gf~~~ 161 (179)
T TIGR00537 144 N---GEPDTFDKLD---ERGFRYE 161 (179)
T ss_pred C---ChHHHHHHHH---hCCCeEE
Confidence 4 3555566663 3456553
No 37
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=117.03 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=111.6
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~ 203 (337)
.++|.+.+..+....+|||+|||.|..++.+|+...+ .+|++||+++++.+.|++|++.+++. +|+++++|+.++...
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 4788888888888999999999999999999998544 89999999999999999999998885 599999999998766
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHH-----HHHHHHHHhCCCCC-cEEEEEc
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF-----QKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-----Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.. ..+||.|+++||.--.|.- .+ +......+.. -.++++.|.+++++ |++.+
T Consensus 111 ~~-~~~fD~Ii~NPPyf~~~~~-~~------------------~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-- 168 (248)
T COG4123 111 LV-FASFDLIICNPPYFKQGSR-LN------------------ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-- 168 (248)
T ss_pred cc-ccccCEEEeCCCCCCCccc-cC------------------cChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE--
Confidence 53 4579999999998776643 11 1112222221 35678888888887 88866
Q ss_pred CCCCcccCHHHHHHHh
Q 019692 278 CSIHQVENEDVIKSVL 293 (337)
Q Consensus 278 CS~~~~ENe~vv~~~l 293 (337)
+++.|.=.-+-..+
T Consensus 169 --V~r~erl~ei~~~l 182 (248)
T COG4123 169 --VHRPERLAEIIELL 182 (248)
T ss_pred --EecHHHHHHHHHHH
Confidence 67777655555555
No 38
>PTZ00146 fibrillarin; Provisional
Probab=99.42 E-value=3.3e-12 Score=118.14 Aligned_cols=91 Identities=27% Similarity=0.291 Sum_probs=70.9
Q ss_pred hHHHHHH------hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.+ +.+++|++|||+|||||++|.+++..+++.+.|+|+|+++++++.+.+.++.. .||.++.+|+..
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 4555554 45789999999999999999999999988899999999998887777666543 578999999875
Q ss_pred CCCCCCCCCCccEEEECCC
Q 019692 200 LDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpP 218 (337)
..........||+||+|..
T Consensus 193 p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhhhcccCCCCEEEEeCC
Confidence 3211111247999999984
No 39
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.42 E-value=2.6e-12 Score=117.79 Aligned_cols=126 Identities=16% Similarity=0.150 Sum_probs=92.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+|||+|||+|..++.++.... ..+|+++|+|+.+++.+++|++.+| ++++++|+.+...... .++||+|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~-~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL-RGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc-CCCEeEEEECC
Confidence 45899999999999999988753 3689999999999999999999876 3678899876432211 24699999999
Q ss_pred CCCCccccCcc-cCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 218 SCSGSGTAAER-LDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 218 PCSg~G~~~~~-~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
||...+.+.+. ++... +.....+ ....+.+++++..|.+++++ |.+++.+.
T Consensus 162 Py~~~~~~~~~~~e~~~----------~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 162 PYVPTDAIALMPPEARD----------HEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCCCchhhhcCCHHHHh----------CCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99987765431 11100 0011111 13456789999999999887 88887655
No 40
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.42 E-value=6.4e-13 Score=120.34 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=82.1
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.++..+.+++|++|||+|||||..+..+++.+++.++|+++|+|+.|++.++++++..+..+|+++++|+++++..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--- 114 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--- 114 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T---
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC---
Confidence 44556678899999999999999999999988778999999999999999999999998889999999999998664
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
++||.|++ +.| +++-+| +.+.|++..+.++| |.++... ++.-+|.
T Consensus 115 ~sfD~v~~-----~fg-lrn~~d--------------------------~~~~l~E~~RVLkPGG~l~ile--~~~p~~~ 160 (233)
T PF01209_consen 115 NSFDAVTC-----SFG-LRNFPD--------------------------RERALREMYRVLKPGGRLVILE--FSKPRNP 160 (233)
T ss_dssp T-EEEEEE-----ES--GGG-SS--------------------------HHHHHHHHHHHEEEEEEEEEEE--EEB-SSH
T ss_pred CceeEEEH-----Hhh-HHhhCC--------------------------HHHHHHHHHHHcCCCeEEEEee--ccCCCCc
Confidence 68999984 223 233222 24678888898887 7776543 3444453
No 41
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=4.3e-12 Score=113.49 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=83.4
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....+..-...+...+++++|++|||+|||+|+.|..+++.++..++|+++|+++.+++.++++++++|+.||+++++|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44555555556667778899999999999999999999999887678999999999999999999999999899999999
Q ss_pred CCCCCCCCCCCCCccEEEECC
Q 019692 197 FLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDp 217 (337)
+....+. ...||+|+++.
T Consensus 136 ~~~~~~~---~~~fD~I~~~~ 153 (212)
T PRK13942 136 GTLGYEE---NAPYDRIYVTA 153 (212)
T ss_pred cccCCCc---CCCcCEEEECC
Confidence 8765433 25799999864
No 42
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.40 E-value=1.1e-12 Score=126.42 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=67.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC------------
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP------------ 205 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~------------ 205 (337)
+.+|||+|||+|.+++.++... .+|+++|+++.+++.+++|++.+|+.|++++.+|+.++.....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 5899999999999999999999999999999999876432100
Q ss_pred -CCCCccEEEECCCCCCc
Q 019692 206 -AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 -~~~~fD~IlvDpPCSg~ 222 (337)
...+||+|++|||.+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 01258999999998653
No 43
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=1.8e-12 Score=109.61 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=91.7
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+.+.+|||+|||+|..+..++....+.++++++|+++.+++.++++++++++.|++++++|+.+++...+ .+||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~--~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE--EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS--TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC--CCeeEEEE
Confidence 4688999999999999999997666678999999999999999999999999999999999999653211 58999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHH
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIK 290 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~ 290 (337)
+.++.... .+..+++.+.+++++ |.++.+.+. +..|.++.+.
T Consensus 80 ~~~l~~~~--------------------------------~~~~~l~~~~~~lk~~G~~i~~~~~-~~~~~~~~~~ 122 (152)
T PF13847_consen 80 NGVLHHFP--------------------------------DPEKVLKNIIRLLKPGGILIISDPN-HNDELPEQLE 122 (152)
T ss_dssp ESTGGGTS--------------------------------HHHHHHHHHHHHEEEEEEEEEEEEE-HSHHHHHHHH
T ss_pred cCchhhcc--------------------------------CHHHHHHHHHHHcCCCcEEEEEECC-hHHHHHHHHH
Confidence 87751110 124678888888886 666655555 3444444433
No 44
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.39 E-value=1.8e-12 Score=124.54 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------C---
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---------P--- 205 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---------~--- 205 (337)
+++|||+|||+|.+++.++... .+|+|+|+++.+++.+++|++.+|+.|++++.+|+.++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3579999999999999998874 589999999999999999999999999999999987643210 0
Q ss_pred -CCCCccEEEECCCCCCc
Q 019692 206 -AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 -~~~~fD~IlvDpPCSg~ 222 (337)
....||.|++|||.+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 01248999999997764
No 45
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=9.4e-12 Score=112.20 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=67.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+++|++|||+|||+|.++.+++..++ .++|+|+|+++.|++.+.+++++. .||.++.+|+...........+||+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCE
Confidence 7788999999999999999999999875 689999999999999988887754 6799999998753111111246999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|++|.+
T Consensus 145 i~~d~~ 150 (226)
T PRK04266 145 IYQDVA 150 (226)
T ss_pred EEECCC
Confidence 998754
No 46
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=8.7e-12 Score=110.00 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=106.9
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|.-..|++...++...+.+.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++|+.+++++.+|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4456788888888888899999999999999999999998764 458999999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
+.+..... ...+|.|++|.. .. ...++..+.+.+++ |.+++
T Consensus 99 ~~~~~~~~--~~~~d~v~~~~~--------~~----------------------------~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 99 APECLAQL--APAPDRVCIEGG--------RP----------------------------IKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred hHHHHhhC--CCCCCEEEEECC--------cC----------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 86532111 134678877631 00 13678888877776 88888
Q ss_pred EcCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 276 STCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 276 sTCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
.+++. |.-..+...++.....+++...
T Consensus 141 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 141 TASSL---EGLYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred EeecH---HHHHHHHHHHHhcCCCCceEEE
Confidence 87762 2222233444332344566544
No 47
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.38 E-value=2e-12 Score=121.19 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=117.2
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~ 202 (337)
.-|..++++..+++|+.|||-+||||++.....-. +.+++|+|++.+|++-++.|++.+|+....+... |+++++.
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 44667788888999999999999999887665443 4799999999999999999999999988777776 9999984
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
.. .+||.|++|||.--+- ......+.++..++|+.+.+.+++ |.+||.+=
T Consensus 261 ~~---~~vdaIatDPPYGrst-----------------------~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p--- 311 (347)
T COG1041 261 RD---NSVDAIATDPPYGRST-----------------------KIKGEGLDELYEEALESASEVLKPGGRIVFAAP--- 311 (347)
T ss_pred CC---CccceEEecCCCCccc-----------------------ccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---
Confidence 43 3699999999953221 111223778889999999998886 88999654
Q ss_pred cccCHHHHHHHhchhcCCCcEEecCCCCCCcchhh
Q 019692 282 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ 316 (337)
Q Consensus 282 ~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (337)
....+.....+|++...+..|.+++..
T Consensus 312 --------~~~~~~~~~~~f~v~~~~~~~~H~sLt 338 (347)
T COG1041 312 --------RDPRHELEELGFKVLGRFTMRVHGSLT 338 (347)
T ss_pred --------CcchhhHhhcCceEEEEEEEeecCceE
Confidence 111112235678888888888776654
No 48
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.38 E-value=9.2e-12 Score=116.17 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=92.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+. +|.++++|+.+..+ ..+||+|
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~----~~~fD~I 193 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP----GRKYDLI 193 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC----CCCccEE
Confidence 3456799999999999999999875 3579999999999999999999999985 59999999865321 1469999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHH-H---HHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMER-L---NKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~-~---~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++|||+...+.+..-+... . ..+.. + ..--..++.++..+.+++++ |.++.-+
T Consensus 194 v~NPPy~~~~~~~~l~~~~----------~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEY----------H-HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred EECCCCCCccchhhCCHhh----------h-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999997665432111000 0 00111 0 01235678899999998887 6666443
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=1.4e-11 Score=107.55 Aligned_cols=124 Identities=20% Similarity=0.203 Sum_probs=95.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+|.+|||+|||+|..+..++.. .+.++|+++|.++.+++.++++++++|+++++++++|+.++.. .++||.|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEeh
Confidence 4889999999999999998865 4557999999999999999999999999889999999988632 2579999986
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
. +.. . ..+++.+.+++++ |.++.. +....+..+....+.
T Consensus 117 ~-------~~~-------------------~----------~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 117 A-------LAS-------------------L----------NVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRK 156 (181)
T ss_pred h-------hhC-------------------H----------HHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHh
Confidence 4 110 0 2345566677776 777653 455667777777666
Q ss_pred hcCCCcEEec
Q 019692 296 AMSFGFQLAT 305 (337)
Q Consensus 296 ~~~~~~~~~~ 305 (337)
+...|++.++
T Consensus 157 ~~~~~~~~~~ 166 (181)
T TIGR00138 157 CQVLGVEPLE 166 (181)
T ss_pred hhhcCceEee
Confidence 5667888765
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.36 E-value=1.1e-11 Score=108.42 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=97.8
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
..++.....+...+++.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++|++++++.+++++.+|+..
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 4455555666677788889999999999999999999874 458999999999999999999999998889999998742
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
.. ..+||+|+++.. .. . . ..+++.+.+.+++ |.+++...
T Consensus 93 ~~-----~~~~D~v~~~~~------~~-~------------------~----------~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 93 EL-----PGKADAIFIGGS------GG-N------------------L----------TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred hc-----CcCCCEEEECCC------cc-C------------------H----------HHHHHHHHHhcCCCeEEEEEEe
Confidence 11 146999998632 00 0 0 2467777787776 77776432
Q ss_pred CCCcccCHHHHHHHhc
Q 019692 279 SIHQVENEDVIKSVLP 294 (337)
Q Consensus 279 S~~~~ENe~vv~~~l~ 294 (337)
..+|...+..+++
T Consensus 133 ---~~~~~~~~~~~l~ 145 (187)
T PRK08287 133 ---LLENLHSALAHLE 145 (187)
T ss_pred ---cHhhHHHHHHHHH
Confidence 3456666666664
No 51
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.36 E-value=7.3e-12 Score=110.66 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=66.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+|+.+++++++|+.+..... ...||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEE
Confidence 56889999999999999865443 24799999999999999999999999988999999987643221 246999999
Q ss_pred CCCC
Q 019692 216 DPSC 219 (337)
Q Consensus 216 DpPC 219 (337)
|||.
T Consensus 128 DPPy 131 (199)
T PRK10909 128 DPPF 131 (199)
T ss_pred CCCC
Confidence 9993
No 52
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=2.1e-11 Score=108.38 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=77.0
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 204 (337)
...+...+++++|++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++++|+. +++++++|+.+..+.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~- 139 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK- 139 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-
Confidence 345566778889999999999999999999998876789999999999999999999999985 499999998765433
Q ss_pred CCCCCccEEEECCC
Q 019692 205 PAYSEVRAILLDPS 218 (337)
Q Consensus 205 ~~~~~fD~IlvDpP 218 (337)
..+||+|+++..
T Consensus 140 --~~~fD~Ii~~~~ 151 (205)
T PRK13944 140 --HAPFDAIIVTAA 151 (205)
T ss_pred --CCCccEEEEccC
Confidence 257999999865
No 53
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=1.2e-11 Score=114.40 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.....++.++++|+..... ..+||+|
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~I 179 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLI 179 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEE
Confidence 45578899999999999999999886 457999999999999999999983344579999999865332 2579999
Q ss_pred EECCCCCCccccCc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 214 LLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 214 lvDpPCSg~G~~~~-~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
++|||+...+.+.. .++....+ ....+ ......+..++.++.+++++ |.+++.
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~e----------p~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHE----------PHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcC----------CchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 99999987765421 11110000 00000 12345678899999998887 666653
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.33 E-value=6.8e-11 Score=107.78 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=89.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++... +...|+++|+++.+++.++++++..|+.++.++++|+.+... ..+||+|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEEC
Confidence 35699999999999999999875 346999999999999999999999999889999999876321 2579999999
Q ss_pred CCCCCccccCccc-CccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 217 PSCSGSGTAAERL-DHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 217 pPCSg~G~~~~~~-d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
||+...+....-. +... + .....+ ..-......++.++.+++++ |.+++.
T Consensus 162 pPy~~~~~~~~~~~~~~~--~--------e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRF--H--------EPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCCCchhhhhhcChhhhh--c--------CCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9998766432100 0000 0 000000 01123345788999998887 666654
No 55
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.33 E-value=6.6e-12 Score=111.73 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=81.2
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....|-.--..+..+|+++||++|||+|||+|+.|..++.+++..++|+++|+++..++.++++++.+|..||.++++|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 45555555556667889999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
.....+. ...||+|++.+.|.
T Consensus 132 g~~g~~~---~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 132 GSEGWPE---EAPFDRIIVTAAVP 152 (209)
T ss_dssp GGGTTGG---G-SEEEEEESSBBS
T ss_pred hhhcccc---CCCcCEEEEeeccc
Confidence 8765433 35799999987653
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.32 E-value=5e-11 Score=96.31 Aligned_cols=110 Identities=22% Similarity=0.302 Sum_probs=86.6
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+...+.+.++.+|||+|||+|..+..+++... .++|+++|+++.+++.++++++.++..+++++.+|+....... ..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--LP 87 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--cC
Confidence 34456677789999999999999999998764 3799999999999999999999999888999999877543222 24
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
+||.|+++.+ .. ...++++.+.+++++ |.++.+
T Consensus 88 ~~D~v~~~~~------~~-----------------------------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGS------GG-----------------------------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCEEEECCc------ch-----------------------------hHHHHHHHHHHHcCCCCEEEEE
Confidence 7999998642 00 023789999998887 777654
No 57
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.32 E-value=3.5e-11 Score=113.42 Aligned_cols=123 Identities=14% Similarity=0.200 Sum_probs=89.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++++|+. +|+++++|+.+..+ ..+||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEEC
Confidence 3689999999999999999874 4579999999999999999999999985 59999999865332 1469999999
Q ss_pred CCCCCccccCccc-Ccc-CCCC-CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 217 PSCSGSGTAAERL-DHL-LPSH-ASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 217 pPCSg~G~~~~~~-d~~-~~~~-~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
||+.+.+.+..-+ +.. .|.. ..+. ..--...+.++..+.+++++ |.+++
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg----------~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAG----------DDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCC----------CchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9998876532111 100 0000 0000 01125667899999998887 66664
No 58
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.9e-11 Score=107.34 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=86.5
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~ 195 (337)
.|..+.|-.--..+..+|++++|++||++|||+|+.|..||++. ++|+++|+++...+.+++|++.+|+.||.++++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 56677777667778889999999999999999999999999996 599999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCC
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
|...-.+. ...||+|++.+-+
T Consensus 128 DG~~G~~~---~aPyD~I~Vtaaa 148 (209)
T COG2518 128 DGSKGWPE---EAPYDRIIVTAAA 148 (209)
T ss_pred CcccCCCC---CCCcCEEEEeecc
Confidence 98766544 3689999997663
No 59
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.31 E-value=4e-11 Score=108.24 Aligned_cols=87 Identities=16% Similarity=0.334 Sum_probs=75.1
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..+.++++++.+|+...+..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--- 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD--- 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC---
Confidence 34455677888999999999999999999998766789999999999999999999988888899999999876533
Q ss_pred CCCccEEEEC
Q 019692 207 YSEVRAILLD 216 (337)
Q Consensus 207 ~~~fD~IlvD 216 (337)
.++||.|+++
T Consensus 112 ~~~fD~V~~~ 121 (231)
T TIGR02752 112 DNSFDYVTIG 121 (231)
T ss_pred CCCccEEEEe
Confidence 2579999975
No 60
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.31 E-value=1.1e-11 Score=119.97 Aligned_cols=112 Identities=27% Similarity=0.320 Sum_probs=88.7
Q ss_pred HHHHHhCCC-CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
+++..+... ++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+|+.+++++++|+..+...
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--- 122 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--- 122 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---
Confidence 334444333 457999999999999999988753 358999999999999999999999999899999998765432
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
...||+|++||| |++ ...|..|+..+++|.++|.||+
T Consensus 123 ~~~fD~V~lDP~--Gs~----------------------------------~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 123 ERKFDVVDIDPF--GSP----------------------------------APFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred cCCCCEEEECCC--CCc----------------------------------HHHHHHHHHHhcCCCEEEEEec
Confidence 146999999998 442 2467777777777899999865
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.30 E-value=4e-11 Score=106.39 Aligned_cols=136 Identities=18% Similarity=0.085 Sum_probs=98.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..++.++.++++|+ ..++...+ ...||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP-DGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-ccccceEEE
Confidence 57899999999999999999875 4478999999999999999999999988899999998 55441111 257999998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+.|... .+.+. + . -...+..+|+.+.+++++ |.++++|+ |+..+..+++
T Consensus 118 ~~~~p~----~~~~~-----~-------------~--~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 118 NFPDPW----PKKRH-----H-------------K--RRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred ECCCCC----CCccc-----c-------------c--cccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHH
Confidence 755210 00000 0 0 001246788898888887 67766553 6777777776
Q ss_pred hhcCCCcEEe
Q 019692 295 IAMSFGFQLA 304 (337)
Q Consensus 295 ~~~~~~~~~~ 304 (337)
.....||...
T Consensus 168 ~~~~~g~~~~ 177 (202)
T PRK00121 168 VLSAEGGFLV 177 (202)
T ss_pred HHHhCccccc
Confidence 6566677664
No 62
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.7e-11 Score=111.71 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=102.3
Q ss_pred hcCeEEEechhhHHHHHHh-CCCCCC-eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 115 VNGCVFLQGKASSMVAAAL-APKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l-~~~~g~-~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
..+.++....+..++-.++ ...... +|||+|||+|..++.++... +...|+|+|+|+.+++.+++|++++|+.++.+
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~ 164 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLV 164 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEE
Confidence 3455555555555555533 222223 79999999999999999875 34799999999999999999999999877777
Q ss_pred EeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCC
Q 019692 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPG 269 (337)
Q Consensus 193 ~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~A~~~~~ 269 (337)
+..|..... .++||+|+++||.=-.- .....++.. ++.....+. .--+.-++++..+..+++
T Consensus 165 ~~~dlf~~~-----~~~fDlIVsNPPYip~~-----~~~~~~~~~-----~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 165 VQSDLFEPL-----RGKFDLIVSNPPYIPAE-----DPELLPEVV-----RYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred Eeeeccccc-----CCceeEEEeCCCCCCCc-----ccccChhhh-----ccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 777755432 14799999999954321 000111000 000000000 223467889999999888
Q ss_pred CcEEEEEcCCCCcccCHHHHHHHh
Q 019692 270 VERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 270 ~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+|.++..-++... .+.|.+.+.
T Consensus 230 ~~g~l~le~g~~q--~~~v~~~~~ 251 (280)
T COG2890 230 PGGVLILEIGLTQ--GEAVKALFE 251 (280)
T ss_pred CCcEEEEEECCCc--HHHHHHHHH
Confidence 8666665555444 334444443
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.28 E-value=6.3e-11 Score=103.76 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=83.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++.+++++++++++|+.++.. .++||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEEE
Confidence 348999999999999999999864 468999999999999999999999999889999999988654 257999997
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+. .+ . . ..+++.+.+++++ |.+++.-..
T Consensus 119 ~~----~~----~------------------~----------~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 119 RA----VA----S------------------L----------SDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred cc----cc----C------------------H----------HHHHHHHHHhcCCCeEEEEEeCC
Confidence 52 11 0 0 3567888888887 788876555
No 64
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.28 E-value=9.5e-11 Score=104.61 Aligned_cols=97 Identities=27% Similarity=0.319 Sum_probs=79.2
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|..+.+......+...+.++++.+|||+|||+|..+..++... ++|+++|+++.+++.++++++++|+.++.++.+|
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3444454444566667888999999999999999999888874 5899999999999999999999999899999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+.+..+. .++||+|+++.+|
T Consensus 135 ~~~~~~~---~~~fD~I~~~~~~ 154 (212)
T PRK00312 135 GWKGWPA---YAPFDRILVTAAA 154 (212)
T ss_pred cccCCCc---CCCcCEEEEccCc
Confidence 8654322 2579999998764
No 65
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.28 E-value=7e-11 Score=102.87 Aligned_cols=127 Identities=23% Similarity=0.329 Sum_probs=89.5
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCC--------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEec
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG--------KIVACELNKERVRRLKDTIKLSGAAN-IEVLHG 195 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g--------~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~ 195 (337)
-+..+..+.++++|+.|||-+||+|++.+..+....+.. +++|+|+++++++.+++|++..|+.. |.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 345556677889999999999999998877776654433 38999999999999999999999875 999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 275 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvY 275 (337)
|+.+++.. .+.+|.|++|||. | ++ ...-..+.++..++++.+.+.+++ ..|+
T Consensus 96 D~~~l~~~---~~~~d~IvtnPPy---G---~r------------------~~~~~~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 96 DARELPLP---DGSVDAIVTNPPY---G---RR------------------LGSKKDLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp -GGGGGGT---TSBSCEEEEE--S---T---TS------------------HCHHHHHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred chhhcccc---cCCCCEEEECcch---h---hh------------------ccCHHHHHHHHHHHHHHHHHHCCC-CEEE
Confidence 99998832 2579999999994 1 11 112234577888999999997775 6666
Q ss_pred EcCC
Q 019692 276 STCS 279 (337)
Q Consensus 276 sTCS 279 (337)
.|++
T Consensus 148 l~~~ 151 (179)
T PF01170_consen 148 LTTS 151 (179)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6665
No 66
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.26 E-value=2.1e-10 Score=111.04 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=94.3
Q ss_pred EEEechhhHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019692 119 VFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~ 197 (337)
++.......++..++. +.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++++. +++++++|+
T Consensus 232 LIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl 309 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW 309 (423)
T ss_pred cCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch
Confidence 3333334444444433 3467799999999999999888764 457999999999999999999999886 699999998
Q ss_pred CCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCCC-cEE
Q 019692 198 LNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPGV-ERV 273 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~A~~~~~~-G~l 273 (337)
.+..... ..+||.|++|||....+-....+.. .+......+. .--+..+.+++.+.+.+++ |.+
T Consensus 310 ~e~~l~~--~~~FDLIVSNPPYI~~~e~~l~~~~----------v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~l 377 (423)
T PRK14966 310 FDTDMPS--EGKWDIIVSNPPYIENGDKHLLQGD----------LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFL 377 (423)
T ss_pred hcccccc--CCCccEEEECCCCCCcchhhhcchh----------hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEE
Confidence 6543211 2479999999997655421100000 0000000110 1223467889999888887 665
Q ss_pred EE
Q 019692 274 VY 275 (337)
Q Consensus 274 vY 275 (337)
++
T Consensus 378 il 379 (423)
T PRK14966 378 LL 379 (423)
T ss_pred EE
Confidence 54
No 67
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=9.8e-11 Score=107.99 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=96.8
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
-|..|.+....+....+.+|||+|||.|..++.+++.. +..+|+-+|+|..+++.+++|++.+++++..+...|..+-.
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc
Confidence 47789999999998888899999999999999999985 56899999999999999999999999988656666654322
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||.|+++||-- .| .+ -....-.+++..|.+.|+. |.|-...=..
T Consensus 222 -----~~kfd~IisNPPfh-~G-----~~---------------------v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 222 -----EGKFDLIISNPPFH-AG-----KA---------------------VVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred -----cccccEEEeCCCcc-CC-----cc---------------------hhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 24799999999932 11 00 1112235789999998775 7554443333
Q ss_pred C
Q 019692 281 H 281 (337)
Q Consensus 281 ~ 281 (337)
.
T Consensus 270 l 270 (300)
T COG2813 270 L 270 (300)
T ss_pred C
Confidence 3
No 68
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=1.3e-10 Score=107.24 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=88.3
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeccCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~---~g~~~v~~~~~D~~~~~~~~ 204 (337)
+....+.+.++++|||+|||+|..+..+++..++.++|+|+|+|++|++.++++... .+..++.++++|+.+++..+
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 444566778899999999999999999998876668999999999999999887642 23457999999999887543
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||.|++. . +++.-+| ...+|.++.+.+++ |.++.++.+
T Consensus 144 ---~sfD~V~~~-----~-~l~~~~d--------------------------~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 ---CYFDAITMG-----Y-GLRNVVD--------------------------RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred ---CCEeEEEEe-----c-ccccCCC--------------------------HHHHHHHHHHHcCcCcEEEEEECC
Confidence 579999852 1 1211111 24678888888887 788776655
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.24 E-value=1.6e-10 Score=111.29 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=92.5
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLN 199 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---~~v~~~~~D~~~ 199 (337)
|..+.+....+....+++|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++|++.++. .+++++..|...
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 6778888887776667799999999999999998874 568999999999999999999998874 368888888754
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
... ..+||.|+++||.---.. .+.. .-.+++..|.+.+++ |.+....
T Consensus 293 ~~~----~~~fDlIlsNPPfh~~~~--------------------~~~~-------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 GVE----PFRFNAVLCNPPFHQQHA--------------------LTDN-------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCC----CCCEEEEEECcCcccCcc--------------------CCHH-------HHHHHHHHHHHhcccCCEEEEEE
Confidence 321 147999999999532100 0111 124688899888887 6555543
No 70
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=2.3e-10 Score=106.81 Aligned_cols=127 Identities=10% Similarity=0.140 Sum_probs=90.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++.+ +.++.+|+.+..+ ..+||+|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA----GQKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc----CCCccEEEEC
Confidence 3699999999999999999875 34799999999999999999999999865 9999999865321 1379999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
||+-...-+...++... +.....+ ..--...+.++..+.+++++ |.+++-++.
T Consensus 190 PPyi~~~~~~~~~~~~~----------~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVR----------FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCCCcchhhcCCcccc----------cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 99875542211111000 0000000 01224678899999998887 777765554
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=111.67 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=100.3
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
.|..+.+....+.....++|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++.+++. .+++..|.....
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~ 258 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI 258 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc
Confidence 35667777777765556799999999999999999874 4568999999999999999999999875 467777865421
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||.|+++||-- .|. + .+. ..-.++++.|.+.+++ |.++..+.+.
T Consensus 259 -----~~~fDlIvsNPPFH-~g~-----~--------------~~~-------~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 259 -----KGRFDMIISNPPFH-DGI-----Q--------------TSL-------DAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred -----CCCccEEEECCCcc-CCc-----c--------------ccH-------HHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 25799999999931 110 0 001 1225778899888886 8999988988
Q ss_pred CcccCHHHHHHH
Q 019692 281 HQVENEDVIKSV 292 (337)
Q Consensus 281 ~~~ENe~vv~~~ 292 (337)
.+-+ ..+++.
T Consensus 307 l~y~--~~l~~~ 316 (342)
T PRK09489 307 LPYP--DLLDET 316 (342)
T ss_pred CChH--HHHHHH
Confidence 8766 344443
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=2.7e-10 Score=99.05 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=103.0
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPK 203 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~~~~ 203 (337)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++..++..+ +.++++|+.+....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 88 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG 88 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc
Confidence 455555666678899999999999999999886 4789999999999999999999988866 88999987653321
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ 282 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~ 282 (337)
..||.|+++||+...+- +..+.. + .. .....-..-......+++++.+++++ |.+++..+++..
T Consensus 89 ----~~~d~vi~n~p~~~~~~-----~~~~~~-~----~~-~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~ 153 (188)
T PRK14968 89 ----DKFDVILFNPPYLPTEE-----EEEWDD-W----LN-YALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG 153 (188)
T ss_pred ----cCceEEEECCCcCCCCc-----hhhhhh-h----hh-hhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC
Confidence 37999999999754321 110000 0 00 00000000123456788999898887 777777666543
Q ss_pred ccCHHHHHHHhchhcCCCcEEe
Q 019692 283 VENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 283 ~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
. +. +..+++ +.||+..
T Consensus 154 ~--~~-l~~~~~---~~g~~~~ 169 (188)
T PRK14968 154 E--DE-VLEYLE---KLGFEAE 169 (188)
T ss_pred H--HH-HHHHHH---HCCCeee
Confidence 2 33 334442 3466653
No 73
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.23 E-value=2.2e-10 Score=106.12 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=87.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+..|+.+++++.+|+.+++..+ +.||+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD~ 149 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVDV 149 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---CceeE
Confidence 457889999999999999888888877777899999999999999999999999989999999998776432 57999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
|+.+.- +...++ ...+++.+.+++++ |.++.+.
T Consensus 150 Vi~~~v------~~~~~d--------------------------~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCV------INLSPD--------------------------KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCc------ccCCCC--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 997632 111111 13678888898887 7777653
No 74
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=1.3e-10 Score=109.97 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=74.6
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.....++++++++|||+|||+|..+..+++..+..+.|+++|+++++++.++++++++|+++|.++.+|+.......
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--- 147 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--- 147 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc---
Confidence 33455678899999999999999999999987656789999999999999999999999989999999987655432
Q ss_pred CCccEEEECC
Q 019692 208 SEVRAILLDP 217 (337)
Q Consensus 208 ~~fD~IlvDp 217 (337)
..||+|+++.
T Consensus 148 ~~fD~Ii~~~ 157 (322)
T PRK13943 148 APYDVIFVTV 157 (322)
T ss_pred CCccEEEECC
Confidence 5699999874
No 75
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.2e-11 Score=118.30 Aligned_cols=117 Identities=19% Similarity=0.350 Sum_probs=92.0
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC--C
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA--Y 207 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~--~ 207 (337)
...++...+..++|+|||+|.+++.+|+.+ .+|+++|++++.+..|+.|++.+|+.|.+++++-++++.+.... .
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~ 452 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCC 452 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCC
Confidence 345677788999999999999999888854 78999999999999999999999999999999977776544321 1
Q ss_pred CCcc-EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcc
Q 019692 208 SEVR-AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 283 (337)
Q Consensus 208 ~~fD-~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ 283 (337)
.+=+ ++++|||.+|.- ...+.....+.++.++||.||..+-.
T Consensus 453 ~~~~~v~iiDPpR~Glh----------------------------------~~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 453 DSETLVAIIDPPRKGLH----------------------------------MKVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCceEEEECCCccccc----------------------------------HHHHHHHHhccCccceEEEEcCHHHh
Confidence 2335 899999987652 23444444455568999999998765
No 76
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.23 E-value=4.5e-11 Score=115.18 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=85.5
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-+|||++||+|..++.++....+..+|+++|+++..++.+++|++.+++.++++++.|+..+.... ..+||+|++||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCCC
Confidence 489999999999999998875455799999999999999999999999988999999988765432 246999999997
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
|+. ...|+.|++.++.|.++|.|||
T Consensus 124 --Gs~----------------------------------~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 --GTP----------------------------------APFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --CCc----------------------------------HHHHHHHHHhcccCCEEEEEec
Confidence 321 1468888887777788888876
No 77
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.22 E-value=9.6e-11 Score=106.30 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=78.3
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 202 (337)
....+...++...++.+|||+|||+|+.++.++..+.+.++|+++|+++++++.+++|++++|+. +|+++.+|+.+..+
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 34555566666677889999999999999999998877899999999999999999999999986 49999999977532
Q ss_pred CC---CCCCCccEEEECCC
Q 019692 203 KD---PAYSEVRAILLDPS 218 (337)
Q Consensus 203 ~~---~~~~~fD~IlvDpP 218 (337)
.. ...++||+||+|++
T Consensus 135 ~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHhCCCCCCCCEEEECCC
Confidence 11 01257999999986
No 78
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.21 E-value=2.1e-11 Score=103.81 Aligned_cols=84 Identities=26% Similarity=0.466 Sum_probs=61.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
..|+|+|||.||-++++|... .+|+|+|+++.+++.+++|++-+|+. +|.++++|+.++.........||+|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 379999999999999999973 58999999999999999999999974 69999999988754422111289999999
Q ss_pred CCCCcccc
Q 019692 218 SCSGSGTA 225 (337)
Q Consensus 218 PCSg~G~~ 225 (337)
|--|-.-.
T Consensus 78 PWGGp~Y~ 85 (163)
T PF09445_consen 78 PWGGPSYS 85 (163)
T ss_dssp -BSSGGGG
T ss_pred CCCCcccc
Confidence 98876544
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.20 E-value=7.6e-11 Score=103.92 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=94.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++... +...|+|+|+++.+++.+++++++.|+.||+++++|+.++.......+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 46699999999999999999874 56799999999999999999999999999999999997654221112479999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
.|.- . +.... .+.+ -.+..++..+.+.+++ |.+..+| .++....++++.
T Consensus 95 ~pdp---------w---~k~~h-------~~~r-----~~~~~~l~~~~r~LkpgG~l~~~t------d~~~~~~~~~~~ 144 (194)
T TIGR00091 95 FPDP---------W---PKKRH-------NKRR-----ITQPHFLKEYANVLKKGGVIHFKT------DNEPLFEDMLKV 144 (194)
T ss_pred CCCc---------C---CCCCc-------cccc-----cCCHHHHHHHHHHhCCCCEEEEEe------CCHHHHHHHHHH
Confidence 8721 1 10000 0000 1135788888888887 6776654 334444443322
Q ss_pred -hcCCCcEEec
Q 019692 296 -AMSFGFQLAT 305 (337)
Q Consensus 296 -~~~~~~~~~~ 305 (337)
....+|+...
T Consensus 145 ~~~~~~f~~~~ 155 (194)
T TIGR00091 145 LSENDLFENTS 155 (194)
T ss_pred HHhCCCeEecc
Confidence 1344576643
No 80
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.9e-10 Score=102.88 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=109.5
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCC-----CEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLN 199 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----g~V~avD~~~~~l~~l~~~~~~~g~~---~v~~~~~D~~~ 199 (337)
+.+..|++..|.++||+|+|+|..|+.+...+... ++|+.+|+|+.|+..++++.++.++. .+.++.+|+++
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 44556788899999999999999999999988653 79999999999999999999887763 38999999999
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
++..+ ..||...+ +-|+ |+-+|+ .+.|+.|.+.||||..++ |-
T Consensus 171 LpFdd---~s~D~yTi-----afGI-RN~th~--------------------------~k~l~EAYRVLKpGGrf~--cL 213 (296)
T KOG1540|consen 171 LPFDD---DSFDAYTI-----AFGI-RNVTHI--------------------------QKALREAYRVLKPGGRFS--CL 213 (296)
T ss_pred CCCCC---CcceeEEE-----ecce-ecCCCH--------------------------HHHHHHHHHhcCCCcEEE--EE
Confidence 99665 56888764 3343 432221 467999999999855444 88
Q ss_pred CCcccCHHHHHHHhchhcCCCcEEecCCCCC
Q 019692 280 IHQVENEDVIKSVLPIAMSFGFQLATPFPNG 310 (337)
Q Consensus 280 ~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~ 310 (337)
.++.+|.+.+++|-+ ..-|++.+.+..|
T Consensus 214 eFskv~~~~l~~fy~---~ysf~VlpvlG~~ 241 (296)
T KOG1540|consen 214 EFSKVENEPLKWFYD---QYSFDVLPVLGEI 241 (296)
T ss_pred EccccccHHHHHHHH---hhhhhhhchhhHh
Confidence 889888888888874 2234454443333
No 81
>PLN02476 O-methyltransferase
Probab=99.19 E-value=1.2e-10 Score=107.49 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=84.8
Q ss_pred eEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEecc
Q 019692 118 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 196 (337)
Q Consensus 118 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D 196 (337)
...+.....++...++......+|||+|+++|+.|+++|..+++.|+|+++|.++++++.+++++++.|+. +|+++.+|
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd 178 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL 178 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 34556666777777777778899999999999999999998887889999999999999999999999996 69999999
Q ss_pred CCCCCCCC---CCCCCccEEEECCC
Q 019692 197 FLNLDPKD---PAYSEVRAILLDPS 218 (337)
Q Consensus 197 ~~~~~~~~---~~~~~fD~IlvDpP 218 (337)
+.+..+.. ...++||.||+|++
T Consensus 179 A~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 179 AAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHHHhcccCCCCCEEEECCC
Confidence 87653221 11257999999998
No 82
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=103.08 Aligned_cols=124 Identities=16% Similarity=0.272 Sum_probs=100.1
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe-ccCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH-GDFLNL 200 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~-~D~~~~ 200 (337)
.+...+...++......+||++|++.|+.|++||..+...++++++|+++++.+.|++|+++.|+.+ |+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5666777777788888999999999999999999999878999999999999999999999999977 88888 587766
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI 280 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~ 280 (337)
... ...++||+||+|+- +.+ +...+..+.+++++|.||.+---+
T Consensus 125 l~~-~~~~~fDliFIDad---------K~~--------------------------yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 125 LSR-LLDGSFDLVFIDAD---------KAD--------------------------YPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHh-ccCCCccEEEEeCC---------hhh--------------------------CHHHHHHHHHHhCCCcEEEEeecc
Confidence 544 22478999999986 111 246788888888887666664444
Q ss_pred Cc
Q 019692 281 HQ 282 (337)
Q Consensus 281 ~~ 282 (337)
.+
T Consensus 169 ~~ 170 (219)
T COG4122 169 FG 170 (219)
T ss_pred cC
Confidence 43
No 83
>PLN02244 tocopherol O-methyltransferase
Probab=99.14 E-value=6.8e-10 Score=106.25 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+++.+|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..|+. +|+++.+|+.+++..+ +.||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~---~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED---GQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC---CCccEEE
Confidence 678999999999999999999875 469999999999999999999988874 6999999998876443 5799998
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+. . ++..-+| ..+++.++.+.+++ |.++.+++
T Consensus 192 s~----~--~~~h~~d--------------------------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 192 SM----E--SGEHMPD--------------------------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EC----C--chhccCC--------------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 62 1 1111111 13677888888887 77777664
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=7.9e-10 Score=96.83 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=78.6
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-----CCCC
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-----KDPA 206 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~-----~~~~ 206 (337)
...+++|++|||+|||+|+.+..++....+.++|+++|+++.+ +..++.++++|+.+... ....
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 3456789999999999999999999887666799999999864 23468888888876421 0001
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
.++||+|++|+++...|.+. ...... ...+..+|..+.+++++ |.++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~--------------------~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWD--------------------IDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCcc--------------------ccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 24799999997654344321 111111 23477889999998887 666653
No 85
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=8.1e-10 Score=99.59 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=82.2
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~ 203 (337)
...++...|++.||.+|++.|+|+|+.+.+++..+++.|+++.+|.++.+.+.+.+..++.|+. ||++++-|.......
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 3456677789999999999999999999999999999999999999999999999999999984 699999998766544
Q ss_pred CCCCCCccEEEECCC
Q 019692 204 DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 ~~~~~~fD~IlvDpP 218 (337)
.. ...+|.|++|.|
T Consensus 173 ~k-s~~aDaVFLDlP 186 (314)
T KOG2915|consen 173 IK-SLKADAVFLDLP 186 (314)
T ss_pred cc-ccccceEEEcCC
Confidence 32 368999999999
No 86
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.10 E-value=1.2e-09 Score=96.66 Aligned_cols=83 Identities=24% Similarity=0.151 Sum_probs=69.4
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
+..+...+...++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..++.+|++...|+.+.+..
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 93 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-- 93 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC--
Confidence 344455566677899999999999999999885 368999999999999999999999988899999998766432
Q ss_pred CCCCccEEEE
Q 019692 206 AYSEVRAILL 215 (337)
Q Consensus 206 ~~~~fD~Ilv 215 (337)
..||.|++
T Consensus 94 --~~fD~I~~ 101 (197)
T PRK11207 94 --GEYDFILS 101 (197)
T ss_pred --CCcCEEEE
Confidence 46999995
No 87
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=1.5e-09 Score=96.91 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------KDPAYS 208 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~------~~~~~~ 208 (337)
.++|.+|||+|||||..+..+++..++.+.|+|+|+++ + .+..+|+++++|+.+... .. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~-~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERV-GDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHh-CCC
Confidence 46789999999999999999999887778999999988 1 234569999999987531 01 125
Q ss_pred CccEEEECC-C-CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 209 EVRAILLDP-S-CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 209 ~fD~IlvDp-P-CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
+||+|++|+ | ++|.. ..+......+...+|..+.+++++ |.++.
T Consensus 117 ~~D~V~S~~~~~~~g~~-----------------------~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTP-----------------------AVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCEEecCCCCccCCCh-----------------------HHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 799999986 3 22210 011112222346789999998887 66665
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.08 E-value=1.1e-09 Score=105.44 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=94.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+....+..+||+|||+|..++++|... +...++|+|+++.++..+.+++.+.|+.||.++++|+..+....+ .+++|.
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~-~~s~D~ 195 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP-SNSVEK 195 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-CCceeE
Confidence 344567799999999999999999985 568999999999999999999999999999999999876532222 367999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV 283 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ 283 (337)
|++.-|+- |+. ++..++ .|..+|..+.+.+++ |.+...|.+....
T Consensus 196 I~lnFPdP------------W~K------------krHRRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 196 IFVHFPVP------------WDK------------KPHRRV--ISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred EEEeCCCC------------ccc------------cchhhc--cHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 99977632 111 001222 267889999998886 8888888764433
No 89
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.08 E-value=9.6e-10 Score=95.18 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=68.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
-.|.+|||++||+|..++..++ ++..+++.+|.|...++.+++|++.+++. ++.++..|+..+.........||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 4699999999999988877665 46789999999999999999999999964 58899999885533332223599999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||.-
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999954
No 90
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.06 E-value=3.5e-10 Score=105.44 Aligned_cols=92 Identities=27% Similarity=0.386 Sum_probs=77.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AY 207 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~ 207 (337)
+...+.+++|+.++|++||.|+.|..+++.+++.++|+|+|.|+.+++.++++++. .++++++++|+.++..... ..
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 34556788999999999999999999999986679999999999999999998876 4679999999988753322 12
Q ss_pred CCccEEEECCCCCCc
Q 019692 208 SEVRAILLDPSCSGS 222 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~ 222 (337)
.+||.|++|.-+|..
T Consensus 89 ~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 89 GKVDGILLDLGVSSP 103 (296)
T ss_pred CccCEEEECCCcccc
Confidence 379999999998854
No 91
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.06 E-value=4.4e-10 Score=99.21 Aligned_cols=81 Identities=30% Similarity=0.427 Sum_probs=60.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+++|+.|+|++||.|.+++.+|.. +....|+|+|+++..++.+++|++.+++.+ |.++++|+..+.. ...||.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEE
Confidence 578999999999999999999985 345789999999999999999999999976 8999999998875 2679999
Q ss_pred EECCCCC
Q 019692 214 LLDPSCS 220 (337)
Q Consensus 214 lvDpPCS 220 (337)
+++.|-+
T Consensus 174 im~lp~~ 180 (200)
T PF02475_consen 174 IMNLPES 180 (200)
T ss_dssp EE--TSS
T ss_pred EECChHH
Confidence 9999944
No 92
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.9e-09 Score=98.74 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=94.8
Q ss_pred hhhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019692 124 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 200 (337)
Q Consensus 124 ~ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~ 200 (337)
+...+...+++ .++|.+|||+|||+|-.++.++.+ +..+|+|+|+|+-+++.+++|++++++.. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 34455555554 468999999999999888877775 56789999999999999999999999875 22222222222
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+ ..++||+|+++- |++.-.++...+..++++ |+++.|=
T Consensus 225 ~----~~~~~DvIVANI-----------------------------------LA~vl~~La~~~~~~lkpgg~lIlSG-- 263 (300)
T COG2264 225 P----ENGPFDVIVANI-----------------------------------LAEVLVELAPDIKRLLKPGGRLILSG-- 263 (300)
T ss_pred c----ccCcccEEEehh-----------------------------------hHHHHHHHHHHHHHHcCCCceEEEEe--
Confidence 2 125899999752 344445777777777776 8888875
Q ss_pred CCcccCHHHHHHHhchhcCCCcEEec
Q 019692 280 IHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 280 ~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
|..+. ++.|...+. ..||++++
T Consensus 264 Il~~q-~~~V~~a~~---~~gf~v~~ 285 (300)
T COG2264 264 ILEDQ-AESVAEAYE---QAGFEVVE 285 (300)
T ss_pred ehHhH-HHHHHHHHH---hCCCeEeE
Confidence 55555 555555552 45788864
No 93
>PHA03412 putative methyltransferase; Provisional
Probab=99.05 E-value=1.5e-09 Score=97.55 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=88.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~--~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|. .++.++++|+..... ..+||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc----cCCccEEE
Confidence 478999999999999999988642 3468999999999999999875 347889999876542 14799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEE---------EEcCCCC-ccc
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV---------YSTCSIH-QVE 284 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lv---------YsTCS~~-~~E 284 (337)
.+||..-.+. .+. .. + ..-...-..+++.|.+++++|.+| ||-|-.. .+|
T Consensus 120 sNPPY~~~~~----~d~---~a------r-------~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~ 179 (241)
T PHA03412 120 SNPPFGKIKT----SDF---KG------K-------YTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDE 179 (241)
T ss_pred ECCCCCCccc----ccc---CC------c-------ccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeecc
Confidence 9999765431 010 00 0 001234567888888877776554 6666544 244
Q ss_pred C--HHHHHHHhc
Q 019692 285 N--EDVIKSVLP 294 (337)
Q Consensus 285 N--e~vv~~~l~ 294 (337)
| -.-+.+|++
T Consensus 180 ~~~~~~~~~~~~ 191 (241)
T PHA03412 180 STTSSKCKKFLD 191 (241)
T ss_pred CcccHHHHHHHH
Confidence 4 344556663
No 94
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.05 E-value=1.5e-09 Score=95.75 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+...++.+|||+|||+|..+..+++. ...|+|+|+++.+++.++++++..|++ +.+...|....+..
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~--- 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN--- 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc---
Confidence 34445566666789999999999999999874 369999999999999999999888875 77777887654321
Q ss_pred CCCccEEEECCC
Q 019692 207 YSEVRAILLDPS 218 (337)
Q Consensus 207 ~~~fD~IlvDpP 218 (337)
.+||.|++..+
T Consensus 93 -~~fD~I~~~~~ 103 (195)
T TIGR00477 93 -EDYDFIFSTVV 103 (195)
T ss_pred -CCCCEEEEecc
Confidence 46999996544
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=6.6e-09 Score=95.38 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+....+.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++ .+++++++|+.++.. ..+||+
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----~~kFDl 129 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----NEKFDV 129 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----cCCCcE
Confidence 3455678999999999999988877642 368999999999999998863 368899999987652 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHH-----------HHHHHHHHhCCCCC-c--EEEEEcC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF-----------QKKALRHALSFPGV-E--RVVYSTC 278 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-----------Q~~lL~~A~~~~~~-G--~lvYsTC 278 (337)
|++|||......-.+ ...... -.+.+.....++++ | .++|++-
T Consensus 130 IIsNPPF~~l~~~d~-----------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 130 VISNPPFGKINTTDT-----------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred EEEcCCccccCchhh-----------------------hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 999999664332111 111111 13556666667766 5 4568774
Q ss_pred CC-CcccCHHHHHHHhchhcCCCcEEec
Q 019692 279 SI-HQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 279 S~-~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
-+ |.--..+-..++|+ ..||...+
T Consensus 187 ~~y~~sl~~~~y~~~l~---~~g~~~~~ 211 (279)
T PHA03411 187 PYYDGTMKSNKYLKWSK---QTGLVTYA 211 (279)
T ss_pred ccccccCCHHHHHHHHH---hcCcEecC
Confidence 44 44445666667774 44666643
No 96
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.03 E-value=1.9e-09 Score=108.26 Aligned_cols=125 Identities=10% Similarity=0.121 Sum_probs=86.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+|+. +|.++.+|+.+... ..+||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~----~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE----KQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc----CCCccEEEE
Confidence 35689999999999999998875 4579999999999999999999999875 59999999764321 247999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
|||.....-.. +. .++. .++.....+ ..--+..+.++..+.+++++ |.++.
T Consensus 213 NPPYi~~~~~~---~l-~~~v-----~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 213 NPPYISHSEKS---EM-AIET-----INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCCchhhh---hc-Cchh-----hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 99977653211 00 0000 000000000 01224567889999998887 66654
No 97
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.03 E-value=5.6e-10 Score=98.03 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=66.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-~~~~~fD~Il 214 (337)
+|.+|||+|||+|..++.+++. +..+|+++|.++..++.+++|++.+++. +++++++|+....... .....||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5889999999999999888775 4468999999999999999999999986 6999999985542211 1112489999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||..
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999964
No 98
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=8.9e-09 Score=94.36 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=80.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++|++.+++. .+.+..+| .+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467999999999999888876653 3457999999999999999999998873 34443332 159999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHH
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
+++... .....++..+.+++++ |.++.|... . +..+-+...
T Consensus 184 vani~~-----------------------------------~~~~~l~~~~~~~LkpgG~lilsgi~--~-~~~~~v~~~ 225 (250)
T PRK00517 184 VANILA-----------------------------------NPLLELAPDLARLLKPGGRLILSGIL--E-EQADEVLEA 225 (250)
T ss_pred EEcCcH-----------------------------------HHHHHHHHHHHHhcCCCcEEEEEECc--H-hhHHHHHHH
Confidence 976320 0123567788888876 888876443 2 233334444
Q ss_pred hchhcCCCcEEec
Q 019692 293 LPIAMSFGFQLAT 305 (337)
Q Consensus 293 l~~~~~~~~~~~~ 305 (337)
+ .+.||++..
T Consensus 226 l---~~~Gf~~~~ 235 (250)
T PRK00517 226 Y---EEAGFTLDE 235 (250)
T ss_pred H---HHCCCEEEE
Confidence 4 245777653
No 99
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.02 E-value=1.7e-09 Score=93.15 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=70.5
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. ..+++++++|+.+++... .
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~---~ 76 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK---L 76 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc---c
Confidence 455667788999999999999999999886 36899999999999999999864 357999999999886432 3
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.||.|+.|+|.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 68999999994
No 100
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.01 E-value=3.2e-10 Score=98.96 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=59.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-CCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-PAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~-~~~~~fD~Il 214 (337)
+|.+|||+|||+|..++...+ ++..+|+.||.++..++.+++|++..++.+ ++++..|+....... ....+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 689999999999988887655 467899999999999999999999999876 999999965443211 0126799999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||.-
T Consensus 120 lDPPY~ 125 (183)
T PF03602_consen 120 LDPPYA 125 (183)
T ss_dssp E--STT
T ss_pred ECCCcc
Confidence 999943
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.01 E-value=8.2e-09 Score=96.57 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=85.1
Q ss_pred hhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 019692 125 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 201 (337)
Q Consensus 125 ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~ 201 (337)
...+...++. ..+|.+|||+|||+|..+..++.. +..+|+|+|+++.+++.+++|++.+++.+ +.+...|.....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~ 222 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI 222 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc
Confidence 3444444433 457899999999999998877764 34699999999999999999999998864 666666532211
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||+|+++.... ....++..+.+++++ |.++.|..
T Consensus 223 -----~~~fDlVvan~~~~-----------------------------------~l~~ll~~~~~~LkpgG~li~sgi-- 260 (288)
T TIGR00406 223 -----EGKADVIVANILAE-----------------------------------VIKELYPQFSRLVKPGGWLILSGI-- 260 (288)
T ss_pred -----CCCceEEEEecCHH-----------------------------------HHHHHHHHHHHHcCCCcEEEEEeC--
Confidence 25799999874310 013567777787776 78877653
Q ss_pred CcccCHHHHHHHh
Q 019692 281 HQVENEDVIKSVL 293 (337)
Q Consensus 281 ~~~ENe~vv~~~l 293 (337)
.. +..+.|...+
T Consensus 261 ~~-~~~~~v~~~~ 272 (288)
T TIGR00406 261 LE-TQAQSVCDAY 272 (288)
T ss_pred cH-hHHHHHHHHH
Confidence 22 3334444444
No 102
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.01 E-value=2.2e-10 Score=101.70 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=73.2
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC--
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK-- 203 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~-- 203 (337)
++...++......+||++|+++|+.|++||..+.++++|+++|+++++.+.+++++++.|+. +|+++.+|+.+..+.
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 34444443445669999999999999999999888899999999999999999999999985 599999998764322
Q ss_pred -CCCCCCccEEEECCC
Q 019692 204 -DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 -~~~~~~fD~IlvDpP 218 (337)
....++||.||+|+.
T Consensus 115 ~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HTTTTTSEEEEEEEST
T ss_pred hccCCCceeEEEEccc
Confidence 111257999999987
No 103
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.99 E-value=5.4e-09 Score=95.59 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=82.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++.+|||+|||+|..+..++..+ .+..+|+++|+|+.|++.++++++.++.. +|+++++|+.+++. ..+|.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCE
Confidence 3578899999999999998888764 35689999999999999999999988875 59999999887652 34788
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
|++.-. +. . ..+ ..+..++++..+.+++ |.++.+..
T Consensus 129 vv~~~~------l~-~----------------l~~-------~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFT------LQ-F----------------LEP-------SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhH------HH-h----------------CCH-------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 874311 10 0 001 1135788888888887 78777763
No 104
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.99 E-value=4.3e-08 Score=93.14 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=79.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~ 208 (337)
...+.+..|.+|||+|||+|..+..++.. +...|+|+|.++.++...+...+..+. .+|.++.+|+.+++. . .
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~---~ 188 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L---K 188 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---C
Confidence 44555567899999999999999999886 345799999999988765554443332 469999999988865 2 5
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+||.|++ . |++....| ...+|+++.+.+++ |.+|.+|-
T Consensus 189 ~FD~V~s----~--~vl~H~~d--------------------------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFS----M--GVLYHRRS--------------------------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEE----C--ChhhccCC--------------------------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 7999994 2 34432111 13568888887776 88887653
No 105
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.98 E-value=1.1e-09 Score=97.72 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
-+|.+|||+|||-|..+..||+. +..|+|+|++++.++.++..+...|+. |...+...+++.... ++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~---~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG---GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC---CCccEEEE
Confidence 46999999999999999999986 389999999999999999999998876 667666666665332 68999995
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
- -++-+-|| -..++++..++++| |.++.||=.
T Consensus 131 m------EVlEHv~d--------------------------p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 M------EVLEHVPD--------------------------PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred h------hHHHccCC--------------------------HHHHHHHHHHHcCCCcEEEEeccc
Confidence 1 12222111 13589999999998 888888754
No 106
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=1.5e-08 Score=93.05 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=68.9
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
.|..-+......+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++. .++.++.+|+..+
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~ 88 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW 88 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence 344444444555667889999999999999999999875 4579999999999999998763 4688999998766
Q ss_pred CCCCCCCCCccEEEECCC
Q 019692 201 DPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpP 218 (337)
.+. .+||+|+++..
T Consensus 89 ~~~----~~fD~v~~~~~ 102 (258)
T PRK01683 89 QPP----QALDLIFANAS 102 (258)
T ss_pred CCC----CCccEEEEccC
Confidence 432 47999997653
No 107
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.97 E-value=3.3e-09 Score=97.03 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=84.2
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
+|...+..+...+...++.+|||+|||+|..+..++.. ...|+++|+++.+++.++++.. .+.++++|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 57777777777776667889999999999998888763 3789999999999999887742 246788998877
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+..+ ++||+|+++.+ +..-+ -...+|.++.+.+++ |.++++|
T Consensus 98 ~~~~---~~fD~V~s~~~------l~~~~--------------------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 98 PLAT---ATFDLAWSNLA------VQWCG--------------------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cCCC---CcEEEEEECch------hhhcC--------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 57999996543 11000 024678888888887 7787775
No 108
>PRK08317 hypothetical protein; Provisional
Probab=98.97 E-value=1.9e-08 Score=90.42 Aligned_cols=114 Identities=25% Similarity=0.239 Sum_probs=84.9
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...++.+...|+...+... ..
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~---~~ 87 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPD---GS 87 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCC---CC
Confidence 4456778899999999999999999999875668999999999999999988332 2356999999987765332 57
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
||.|+++-. +..-+ -+..+++++.+++++ |.++.+.+.
T Consensus 88 ~D~v~~~~~------~~~~~--------------------------~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 88 FDAVRSDRV------LQHLE--------------------------DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEEech------hhccC--------------------------CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999997532 11000 024567777777776 888877654
No 109
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.96 E-value=4.1e-09 Score=96.82 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=64.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..|+ .+++++++|+.++.... .++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--ETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc--CCCCCEEE
Confidence 45789999999999999999885 36899999999999999999999887 46999999988764322 25799999
Q ss_pred EC
Q 019692 215 LD 216 (337)
Q Consensus 215 vD 216 (337)
+.
T Consensus 118 ~~ 119 (255)
T PRK11036 118 FH 119 (255)
T ss_pred eh
Confidence 64
No 110
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.95 E-value=6e-09 Score=95.67 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=63.1
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+...+...++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++ +++++++|+.++.+ ..
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~ 88 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP----KP 88 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC----CC
Confidence 3445667789999999999999999999875 457999999999999988653 47788999887642 25
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
+||+|++...
T Consensus 89 ~fD~v~~~~~ 98 (255)
T PRK14103 89 DTDVVVSNAA 98 (255)
T ss_pred CceEEEEehh
Confidence 7999998654
No 111
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.95 E-value=3e-08 Score=93.62 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=79.9
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++..-+..+ ..++.+...++.+++.. ..|
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~F 189 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YAF 189 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CCc
Confidence 345677999999999999998888765 34589999999999877544333322 24578888888777642 469
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
|.|++ + |++...++ + ...|++..+.+++ |.||.+|..+...+
T Consensus 190 D~V~s----~--gvL~H~~d----------------p----------~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 190 DTVFS----M--GVLYHRKS----------------P----------LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred CEEEE----c--chhhccCC----------------H----------HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 99994 3 34432211 1 3567888887776 88888876554443
No 112
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=4.6e-09 Score=99.34 Aligned_cols=105 Identities=24% Similarity=0.306 Sum_probs=83.4
Q ss_pred CCchhhhcCeEEEechhhHHHH--------HHh-CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Q 019692 109 HVHPLIVNGCVFLQGKASSMVA--------AAL-APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss~l~~--------~~l-~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~ 179 (337)
..+-.-.+|..+-.|.+..+.. ..+ ...+|++|+||+||-|.+|+.+|..- ..+|+|+|+|+..++.++
T Consensus 151 teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~ 228 (341)
T COG2520 151 TETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLK 228 (341)
T ss_pred ceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHH
Confidence 3444456777777776643321 111 23569999999999999999999973 344999999999999999
Q ss_pred HHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 180 DTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 180 ~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|++.+++.+ |.++++|+..+.+.. ..+|.|++.-|
T Consensus 229 eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIim~~p 265 (341)
T COG2520 229 ENIRLNKVEGRVEPILGDAREVAPEL---GVADRIIMGLP 265 (341)
T ss_pred HHHHhcCccceeeEEeccHHHhhhcc---ccCCEEEeCCC
Confidence 9999999988 999999999987653 57999999877
No 113
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.94 E-value=1.2e-08 Score=94.27 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=88.9
Q ss_pred hhcCeEEEech-hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 114 IVNGCVFLQGK-ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 114 ~~~G~~~~Qd~-ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
|-.|++..... ....+...+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.++++... ..+|.+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~ 103 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEF 103 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEE
Confidence 34455555432 23444555778899999999999999998888753 46999999999999999988754 246999
Q ss_pred EeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-c
Q 019692 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-E 271 (337)
Q Consensus 193 ~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G 271 (337)
+.+|+...+..+ ++||+|++-.-.... +. .-...+|+++.+++++ |
T Consensus 104 ~~~D~~~~~~~~---~~FD~V~s~~~l~h~-----------------------~~-------~d~~~~l~~i~r~LkPGG 150 (263)
T PTZ00098 104 EANDILKKDFPE---NTFDMIYSRDAILHL-----------------------SY-------ADKKKLFEKCYKWLKPNG 150 (263)
T ss_pred EECCcccCCCCC---CCeEEEEEhhhHHhC-----------------------CH-------HHHHHHHHHHHHHcCCCc
Confidence 999988654332 579999962110000 00 1135788999998887 7
Q ss_pred EEEEEc
Q 019692 272 RVVYST 277 (337)
Q Consensus 272 ~lvYsT 277 (337)
.++.+.
T Consensus 151 ~lvi~d 156 (263)
T PTZ00098 151 ILLITD 156 (263)
T ss_pred EEEEEE
Confidence 766553
No 114
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=5.7e-09 Score=97.71 Aligned_cols=94 Identities=26% Similarity=0.261 Sum_probs=77.9
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~ 199 (337)
.+......++..+.+.++++|||+|||+|..|..++.. ..+|+|+|+|+.+++.+++++...+ ..+++++++|+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 33344455666778889999999999999999999886 3689999999999999999998877 4679999999987
Q ss_pred CCCCCCCCCCccEEEECCCCCCc
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.+. ..||.|+.++|...+
T Consensus 97 ~~~-----~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 97 TEF-----PYFDVCVANVPYQIS 114 (294)
T ss_pred hcc-----cccCEEEecCCcccC
Confidence 642 458999999998754
No 115
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=5.9e-09 Score=95.99 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=91.6
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 202 (337)
..-.++...+.++||++|||+|||-|+.+..+|+.. +.+|+|+++|++..+.++++++..|+. +|++...|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 334455667889999999999999999999999986 479999999999999999999999997 7999999988775
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+.||.|+ +.|++-.- .. +.-...++.+.+.+++ |.++--|-+
T Consensus 136 -----e~fDrIv------SvgmfEhv-----------------g~-------~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 136 -----EPFDRIV------SVGMFEHV-----------------GK-------ENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred -----cccceee------ehhhHHHh-----------------Cc-------ccHHHHHHHHHhhcCCCceEEEEEec
Confidence 3499998 46665210 01 1124678888887776 766554433
No 116
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.91 E-value=2.9e-08 Score=89.37 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=69.2
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~ 206 (337)
.....+...++.+|||+|||+|..+..++.......+++++|+++.+++.+++++...+. .++.++.+|+.+.+..
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--- 118 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP--- 118 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC---
Confidence 344556667889999999999999999998864358999999999999999999887655 3589999999876532
Q ss_pred CCCccEEEE
Q 019692 207 YSEVRAILL 215 (337)
Q Consensus 207 ~~~fD~Ilv 215 (337)
...||+|++
T Consensus 119 ~~~~D~I~~ 127 (239)
T PRK00216 119 DNSFDAVTI 127 (239)
T ss_pred CCCccEEEE
Confidence 257999985
No 117
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=1.4e-08 Score=108.58 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=105.6
Q ss_pred CeEEEechhhHHHHHHhCCC-----CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC----
Q 019692 117 GCVFLQGKASSMVAAALAPK-----PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---- 187 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~-----~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---- 187 (337)
|-++..+.+-.++-. +... ++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+++
T Consensus 94 ~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~ 171 (1082)
T PLN02672 94 SIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDG 171 (1082)
T ss_pred CcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCccccc
Confidence 445555555555444 4322 24689999999999999999875 346999999999999999999998753
Q ss_pred ------------CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCc-ccCccCCCCCCCCCCCcccHHHH----
Q 019692 188 ------------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---- 250 (337)
Q Consensus 188 ------------~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~-~~d~~~~~~~~~~~~~~~~~~~~---- 250 (337)
++|+++++|..+..... ..+||+|+.+||.=..+-... .++.+-.+ +.....+......+
T Consensus 172 ~~~~~~~~~~l~~rV~f~~sDl~~~~~~~--~~~fDlIVSNPPYI~~~e~~~l~~eV~~~e-p~~~~~~~~p~~AL~g~~ 248 (1082)
T PLN02672 172 LPVYDGEGKTLLDRVEFYESDLLGYCRDN--NIELDRIVGCIPQILNPNPEAMSKLVTENA-SEEFLYSLSNYCALQGFV 248 (1082)
T ss_pred ccccccccccccccEEEEECchhhhcccc--CCceEEEEECCCcCCCcchhhcChhhhhcc-ccccccccCccccccCCC
Confidence 36999999987654221 136999999999654432110 00110000 00000000000000
Q ss_pred --HHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 251 --NKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 251 --~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
..--.+.++|+..|.+++++|..++ |-+.....+.|.+++++
T Consensus 249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~--lEiG~~q~~~v~~~l~~ 292 (1082)
T PLN02672 249 EDQFGLGLIARAVEEGISVIKPMGIMI--FNMGGRPGQAVCERLFE 292 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEE--EEECccHHHHHHHHHHH
Confidence 1234566889999999888744444 45556666666655664
No 118
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.91 E-value=7.3e-09 Score=98.12 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.+|.+|||+|||+|..+..++.. .+.|+++|.++++++.++++++..+. .+|+++++|+.+++... ++||+|
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~V 202 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAV 202 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEE
Confidence 457889999999999999988863 46999999999999999988776554 46999999998876432 579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 203 i~ 204 (322)
T PLN02396 203 LS 204 (322)
T ss_pred EE
Confidence 85
No 119
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=9e-09 Score=93.86 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=79.3
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLD 201 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~ 201 (337)
....++...++......+||++|++.|+.|+.||..+.+.++|+++|.++++.+.+++++++.|+. +|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 455566666666666779999999999999999998877899999999999999999999999975 5999999987754
Q ss_pred CCCC----CCCCccEEEECCC
Q 019692 202 PKDP----AYSEVRAILLDPS 218 (337)
Q Consensus 202 ~~~~----~~~~fD~IlvDpP 218 (337)
+... ..++||+||+|+-
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 3310 0257999999976
No 120
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=9.8e-09 Score=90.18 Aligned_cols=141 Identities=23% Similarity=0.226 Sum_probs=99.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~~~~ 209 (337)
+++|..|+|+||+||+++..+++.++.+++|+|+|+.+-.. +.+|.++++|++.-... ......
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46799999999999999999999998888999999987442 45699999999875421 111234
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
+|+|++|+----+|... .+......+-...++-|...+++ |..| |.....++++.
T Consensus 112 ~DvV~sD~ap~~~g~~~---------------------~Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~ 167 (205)
T COG0293 112 VDVVLSDMAPNTSGNRS---------------------VDHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFED 167 (205)
T ss_pred cceEEecCCCCcCCCcc---------------------ccHHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHH
Confidence 79999998765555431 12233444455667777777776 7666 67778888777
Q ss_pred HHHHhchhcCCCcEEecCCCCCCcch
Q 019692 289 IKSVLPIAMSFGFQLATPFPNGTAEA 314 (337)
Q Consensus 289 v~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (337)
+-+.+. ..|+.+....+|.+|.
T Consensus 168 ~l~~~~----~~F~~v~~~KP~aSR~ 189 (205)
T COG0293 168 LLKALR----RLFRKVKIFKPKASRK 189 (205)
T ss_pred HHHHHH----HhhceeEEecCccccC
Confidence 766663 2466655556665544
No 121
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.88 E-value=9.8e-09 Score=95.89 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=83.6
Q ss_pred hhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 019692 125 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 201 (337)
Q Consensus 125 ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~ 201 (337)
+..++..++. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+|+..++.+++|++.+|+.. +.+ ....+..
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~ 222 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV 222 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc
Confidence 3455555543 567999999999999888766664 56799999999999999999999999976 433 2222211
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
..+||+|+.+-= +..-..++....+++++ |.++. |-
T Consensus 223 -----~~~~dlvvANI~-----------------------------------~~vL~~l~~~~~~~l~~~G~lIl---SG 259 (295)
T PF06325_consen 223 -----EGKFDLVVANIL-----------------------------------ADVLLELAPDIASLLKPGGYLIL---SG 259 (295)
T ss_dssp -----CS-EEEEEEES------------------------------------HHHHHHHHHHCHHHEEEEEEEEE---EE
T ss_pred -----cccCCEEEECCC-----------------------------------HHHHHHHHHHHHHhhCCCCEEEE---cc
Confidence 267999997521 12223455555556665 78875 44
Q ss_pred CcccCHHHHHHHhchhcCCCcEEec
Q 019692 281 HQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 281 ~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
...+..+.|...++ . ||++..
T Consensus 260 Il~~~~~~v~~a~~---~-g~~~~~ 280 (295)
T PF06325_consen 260 ILEEQEDEVIEAYK---Q-GFELVE 280 (295)
T ss_dssp EEGGGHHHHHHHHH---T-TEEEEE
T ss_pred ccHHHHHHHHHHHH---C-CCEEEE
Confidence 44445455555552 3 788754
No 122
>PRK10742 putative methyltransferase; Provisional
Probab=98.88 E-value=2.5e-08 Score=90.10 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=76.6
Q ss_pred hHHHHHHhCCCCCC--eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEe
Q 019692 126 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GA---ANIEVLH 194 (337)
Q Consensus 126 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~------g~---~~v~~~~ 194 (337)
...++.++.+++|. +|||++||.|..++.++.+ +++|+++|.++.....+++++++. +. .++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778889999999 9999999999999999987 467999999999999999999985 32 5699999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
+|+..+..... ..||+|++|||..
T Consensus 152 ~da~~~L~~~~--~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDIT--PRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCC--CCCcEEEECCCCC
Confidence 99887765432 3699999999954
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=98.87 E-value=3.3e-08 Score=91.95 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=80.7
Q ss_pred CCCeEEeecCCchhHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 137 PGWKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIKL-SGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~-la~~~~~~g~V~avD~~~~~l~~l~~~~~~-~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
++.+|+|+|||+|+.|.. +++...++++++++|+|+++++.+++.+++ .|+.+ |+|..+|+.+.... .+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcCEE
Confidence 678999999999976544 454556778999999999999999999965 78865 99999999876432 2579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+++ -+- +.- ...+.++|++..+.+++ |.+++-+
T Consensus 200 F~~-ALi--~~d----------------------------k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALV--GMD----------------------------KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-ccc--ccc----------------------------cccHHHHHHHHHHhcCCCcEEEEec
Confidence 998 211 110 01136789999887776 7777765
No 124
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.87 E-value=1.2e-08 Score=94.05 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=74.2
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
+.......++..+++.++++|||+|||+|..|..+++. ..+|+++|+++.+++.++++++. ..+++++++|+..+
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 33344455666677888999999999999999999987 36899999999999999988865 46799999999876
Q ss_pred CCCCCCCCCccEEEECCCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCS 220 (337)
+. ..||.|+.++|..
T Consensus 88 ~~-----~~~d~Vv~NlPy~ 102 (258)
T PRK14896 88 DL-----PEFNKVVSNLPYQ 102 (258)
T ss_pred Cc-----hhceEEEEcCCcc
Confidence 52 3479999999965
No 125
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.86 E-value=3.9e-09 Score=82.82 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=58.2
Q ss_pred EEeecCCchhHHHHHHHHc--CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 141 VLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~--~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
|||+|||+|..+..++... ++..+++++|+|+.+++.++++.+..+. +++++++|+.+++... ++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~---~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD---GKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS---SSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC---CCeeEEEE
Confidence 7999999999999999986 2237999999999999999999988777 6999999999876433 58999995
No 126
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.86 E-value=3.4e-08 Score=87.37 Aligned_cols=143 Identities=24% Similarity=0.270 Sum_probs=98.7
Q ss_pred hHHHHHH------hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.+ +.+++|.+||-+|+++|..-.|++..++..|.|+|+|.+++..+.+-..+++. +||..+.+|++.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 5566555 34678999999999999999999999998999999999999999998888775 689999999997
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH-HHHhCCCCC-cEEEEE-
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL-RHALSFPGV-ERVVYS- 276 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL-~~A~~~~~~-G~lvYs- 276 (337)
......-.+.+|+|+.|.. -|| |.+|+ .+|-.||+. |.++.+
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---------Qp~--------------------------Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---------QPD--------------------------QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---------STT--------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhcccccccEEEecCC---------ChH--------------------------HHHHHHHHHHhhccCCcEEEEEE
Confidence 7655444568999999987 222 44554 455457776 765544
Q ss_pred -cCCCCc-ccCHHHHHHHhchhcCCCcEEec
Q 019692 277 -TCSIHQ-VENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 277 -TCS~~~-~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
+-|+.. ...+.+.+..++.-+..+|++..
T Consensus 179 Ka~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 179 KARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 234443 45566666666544455677643
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.85 E-value=2.2e-08 Score=76.62 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=78.0
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|+|||+|..+..++. .+..+++++|.++..+..+++.....+..++.++..|+.+..... ..+||+|+++++|
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA--DESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcccc--CCceEEEEEccce
Confidence 489999999999988877 346799999999999999987555555567999999988776411 3579999999997
Q ss_pred CCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 220 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 220 Sg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
... ...+..+++.+.+.+++ |.++++
T Consensus 77 ~~~-------------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-------------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-------------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 642 12245777887777776 666654
No 128
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.85 E-value=5.5e-08 Score=97.17 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=83.0
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
++..+.+.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.++++....+ .++++..+|+...+... +
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~---~ 331 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPD---N 331 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCC---C
Confidence 4444567788999999999999999998865 4689999999999999998876433 35999999988765332 5
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+||+|++. +++..-+| ...+|..+.+++++ |.++.++-.
T Consensus 332 ~fD~I~s~------~~l~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 332 SFDVIYSR------DTILHIQD--------------------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CEEEEEEC------CcccccCC--------------------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 79999963 12211110 14678888888887 777766533
No 129
>PRK04457 spermidine synthase; Provisional
Probab=98.84 E-value=3.6e-08 Score=90.99 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..++.+|||+|||.|..+..++... +..+|+++|+++.+++.+++++...+. ++++++.+|+.++....+ .+||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--HSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--CCCCEE
Confidence 3456799999999999999998876 568999999999999999998865543 579999999876643322 579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++|+- .+.++ |.. -...++++.+.+.+++ |.++.-..+
T Consensus 141 ~~D~~-~~~~~----~~~-----------------------l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 141 LVDGF-DGEGI----IDA-----------------------LCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred EEeCC-CCCCC----ccc-----------------------cCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99963 22221 110 0025778888888877 776654333
No 130
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.84 E-value=4.3e-08 Score=91.69 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.++++++..++ ++++...|+..... .++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----cCCccEEEE
Confidence 34569999999999999999885 37999999999999999999999888 78888888876543 257999996
Q ss_pred CC
Q 019692 216 DP 217 (337)
Q Consensus 216 Dp 217 (337)
-.
T Consensus 191 ~~ 192 (287)
T PRK12335 191 TV 192 (287)
T ss_pred cc
Confidence 54
No 131
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.84 E-value=4e-08 Score=89.30 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=63.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++.+|||+|||+|..+..+++.+. +..+|+++|+++.+++.++++++..+. .+++++++|+..++. ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCE
Confidence 35788999999999999999988753 468999999999999999999988764 369999999987753 34787
Q ss_pred EEE
Q 019692 213 ILL 215 (337)
Q Consensus 213 Ilv 215 (337)
|++
T Consensus 126 v~~ 128 (239)
T TIGR00740 126 VIL 128 (239)
T ss_pred Eee
Confidence 774
No 132
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.82 E-value=1.3e-08 Score=94.31 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=62.5
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~ 204 (337)
-..++..+++++|++|||+|||.|+.+..+|+.. +.+|+++.+|+...+.+++.+++.|+.+ |++...|..+++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3455666889999999999999999999999986 4799999999999999999999999865 999999988765
Q ss_pred CCCCCccEEEE
Q 019692 205 PAYSEVRAILL 215 (337)
Q Consensus 205 ~~~~~fD~Ilv 215 (337)
.+||.|+.
T Consensus 126 ---~~fD~IvS 133 (273)
T PF02353_consen 126 ---GKFDRIVS 133 (273)
T ss_dssp ----S-SEEEE
T ss_pred ---CCCCEEEE
Confidence 37999984
No 133
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.80 E-value=6.9e-09 Score=96.34 Aligned_cols=184 Identities=20% Similarity=0.239 Sum_probs=125.2
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHH-------HHHHHHHHhCCCc--EEEEe
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-------RLKDTIKLSGAAN--IEVLH 194 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~-------~l~~~~~~~g~~~--v~~~~ 194 (337)
+=|.+.+....++||+.|+|-+.|||+.-...|.. ++.|+|.|||-.+++ ..+.|++++|... +.++.
T Consensus 195 eLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 195 ELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 34667788888999999999999999877666654 479999999999887 4688999999654 78899
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCCC---CccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSCS---GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V 270 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPCS---g~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~ 270 (337)
+|+.+.+.... ..||.|+||||.- |.-...++--.+-++. ....+.........+..+--++|.-+.+.+. +
T Consensus 272 ~D~sn~~~rsn--~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~--~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~g 347 (421)
T KOG2671|consen 272 ADFSNPPLRSN--LKFDAIVCDPPYGVREGARKTGKKKSVRTTEE--SSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDG 347 (421)
T ss_pred ecccCcchhhc--ceeeEEEeCCCcchhhhhhhhcccCcccCccc--ccccccCCccchhHHHHHHhhHHHhhHhhhhcC
Confidence 99998776542 5799999999952 1100000000000000 0001112334555677777789999988655 5
Q ss_pred cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe----cCCCCCCcchhhcccc
Q 019692 271 ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA----TPFPNGTAEASQFLKA 320 (337)
Q Consensus 271 G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 320 (337)
|++|+ +.|.-+|+.....+. .++.+++. .++..|.++-....++
T Consensus 348 grlv~----w~p~~~e~~~~~~~P--~h~~lsl~~ns~q~~~~~srrllt~~k~ 395 (421)
T KOG2671|consen 348 GRLVF----WLPTITEEYGEDDIP--SHPYLSLIYNSEQPFTHWSRRLLTYQKL 395 (421)
T ss_pred ceEEE----ecCchhhccCcccCC--CCcchhhhhhhccccchhhhhheeeeec
Confidence 99997 666777777666553 45556653 4577888888776555
No 134
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.80 E-value=1.8e-08 Score=93.47 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=71.1
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
-...+...+++.++++|||+|||+|..|..++... .+|+|+|+|+.+++.+++++.. .+++++++|+.+++...
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 34455566778899999999999999999999873 4899999999999999987742 57999999999875332
Q ss_pred CCCCCccEEEECCCCCC
Q 019692 205 PAYSEVRAILLDPSCSG 221 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg 221 (337)
. .+|.|+.+||..-
T Consensus 104 --~-~~~~vv~NlPY~i 117 (272)
T PRK00274 104 --L-QPLKVVANLPYNI 117 (272)
T ss_pred --c-CcceEEEeCCccc
Confidence 1 1589999999643
No 135
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.79 E-value=4.8e-08 Score=94.92 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=64.0
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+.+++|.+|||+|||+|+.+..+++.. +.+|+++|+|+++++.++++++ +. ++++...|...+.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~----- 226 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLN----- 226 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcC-----
Confidence 345566778899999999999999999998875 3689999999999999999885 33 3788888876541
Q ss_pred CCCccEEEE
Q 019692 207 YSEVRAILL 215 (337)
Q Consensus 207 ~~~fD~Ilv 215 (337)
++||.|++
T Consensus 227 -~~fD~Ivs 234 (383)
T PRK11705 227 -GQFDRIVS 234 (383)
T ss_pred -CCCCEEEE
Confidence 56999985
No 136
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=3.1e-09 Score=87.30 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=65.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
-+|..++|+|||.|..+++. .+.....|+++|+++.+++...+|++.+.+. +.++++|..+..+.. +.||.+++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~---g~fDtavi 120 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKG---GIFDTAVI 120 (185)
T ss_pred ccCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhccC---CeEeeEEe
Confidence 46899999999999887443 3345578999999999999999999998875 689999988876553 67999999
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
|||
T Consensus 121 Npp 123 (185)
T KOG3420|consen 121 NPP 123 (185)
T ss_pred cCC
Confidence 999
No 137
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.77 E-value=6.9e-08 Score=84.54 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=62.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..++..-++.++||+|||.|..++.+|+. +..|+|+|+|+..++.+++.+++.+++ |+....|..+.... ..
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~----~~ 94 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP----EE 94 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T----TT
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc----CC
Confidence 34556667789999999999999999996 468999999999999999999998887 99999998876543 46
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
||+|+.
T Consensus 95 yD~I~s 100 (192)
T PF03848_consen 95 YDFIVS 100 (192)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 999985
No 138
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.76 E-value=3.5e-08 Score=93.18 Aligned_cols=108 Identities=23% Similarity=0.283 Sum_probs=76.4
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHc------CCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~------~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..|.++-...-+.+++.++.+.++++|+|.|||+|++...+...+ .....++|+|+++..+..++-|+.-.|+.
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp SCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred ccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 347777777788899999999999999999999999988877754 24578999999999999999988777653
Q ss_pred --cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCcc
Q 019692 189 --NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 223 (337)
Q Consensus 189 --~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G 223 (337)
+..+..+|....+... ...+||+|+.+||....+
T Consensus 104 ~~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp CBGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES
T ss_pred cccccccccccccccccc-cccccccccCCCCccccc
Confidence 3468888876554332 135899999999988763
No 139
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=4.2e-08 Score=88.73 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=92.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC--CCCCCCCCCCccEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN--LDPKDPAYSEVRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~--~~~~~~~~~~fD~I 213 (337)
.+..+||+|||+|..++.++..+. .+.|+|+|.++.++..+.+|++++++.+ +.+++.+.+. ..+.....+++|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 466899999999999999999886 6899999999999999999999999866 7777553322 11111124789999
Q ss_pred EECCCCCCccccC-cccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 214 LLDPSCSGSGTAA-ERLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 214 lvDpPCSg~G~~~-~~~d~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
+++||.-..-=++ -.|+.+. +..+-.+. +--+.-..+..-|-+++++ |.+.+.+-- ..+....
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~----------yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~--~~~~~~l 294 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRL----------YEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE--RKEHSYL 294 (328)
T ss_pred ecCCCcccccchhhcCchhee----------cCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc--cccCcHH
Confidence 9999954221100 0111100 00111110 1123334556667777776 777775432 2555667
Q ss_pred HHHHhc
Q 019692 289 IKSVLP 294 (337)
Q Consensus 289 v~~~l~ 294 (337)
|...+.
T Consensus 295 v~~~m~ 300 (328)
T KOG2904|consen 295 VRIWMI 300 (328)
T ss_pred HHHHHH
Confidence 777663
No 140
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.75 E-value=1.6e-07 Score=83.69 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=65.5
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
....+...++.+|||+|||+|..+..++......++++++|+++.+++.++++.. ...++.++.+|+.+.+.. .+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~---~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE---DN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC---CC
Confidence 3444555678999999999999999999886433689999999999999998876 335688999999876532 25
Q ss_pred CccEEEE
Q 019692 209 EVRAILL 215 (337)
Q Consensus 209 ~fD~Ilv 215 (337)
+||+|++
T Consensus 106 ~~D~i~~ 112 (223)
T TIGR01934 106 SFDAVTI 112 (223)
T ss_pred cEEEEEE
Confidence 7999985
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.72 E-value=3.8e-07 Score=86.01 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=88.2
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 204 (337)
...+...++..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.+++++++.|+. +|+++.+|+.+.+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence 3445556677888999999999999999999985 5579999997 78999999999999985 59999999875432
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV 283 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ 283 (337)
..+|+|++ + .++.. ++.+ .-.++|+++.+.+++ |+++-....+...
T Consensus 214 ---~~~D~v~~----~--~~lh~-----------------~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 214 ---PEADAVLF----C--RILYS-----------------ANEQ-------LSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred ---CCCCEEEe----E--hhhhc-----------------CChH-------HHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 23688875 1 12211 0111 125789999988886 7776655444433
Q ss_pred cC
Q 019692 284 EN 285 (337)
Q Consensus 284 EN 285 (337)
++
T Consensus 261 ~~ 262 (306)
T TIGR02716 261 EN 262 (306)
T ss_pred CC
Confidence 33
No 142
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.70 E-value=9e-08 Score=86.07 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=66.5
Q ss_pred EechhhHHHHHHhCC---CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019692 121 LQGKASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~---~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~ 197 (337)
+|......+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. .++.++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecch
Confidence 444444444433332 335789999999999999999875 45689999999999998887764 3688999998
Q ss_pred CCCCCCCCCCCCccEEEECCC
Q 019692 198 LNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpP 218 (337)
.+.+... .+||+|+++-.
T Consensus 90 ~~~~~~~---~~fD~vi~~~~ 107 (240)
T TIGR02072 90 EKLPLED---SSFDLIVSNLA 107 (240)
T ss_pred hhCCCCC---CceeEEEEhhh
Confidence 8776432 57999997543
No 143
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.70 E-value=3e-07 Score=87.77 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=103.3
Q ss_pred CCCchhhhcCeEEEechhh------HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC--------------------
Q 019692 108 LHVHPLIVNGCVFLQGKAS------SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-------------------- 161 (337)
Q Consensus 108 ~~~~~~~~~G~~~~Qd~ss------~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-------------------- 161 (337)
.....+++.||=.-+..+. ..+..+.+.+++..++|--||+|.+.+..|-+..+
T Consensus 156 ttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~ 235 (381)
T COG0116 156 TTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKD 235 (381)
T ss_pred CCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHH
Confidence 3445778888877777653 22233445677889999999999888777665432
Q ss_pred -----------CC-------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCCCCc
Q 019692 162 -----------KG-------KIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 162 -----------~g-------~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.+ .++|+|+|+++++.|+.|+++.|+.. |++.++|+..+.... +.+|+|++|||.- .
T Consensus 236 lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYG-e 311 (381)
T COG0116 236 LWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYG-E 311 (381)
T ss_pred HHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcc-h
Confidence 11 47899999999999999999999965 999999999987553 5789999999942 1
Q ss_pred cccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 223 GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 223 G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+ +. +. .....+...+.+...+.++. +..|++|
T Consensus 312 -----R----lg-----------~~---~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 312 -----R----LG-----------SE---ALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred -----h----cC-----------Ch---hhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 1 10 12 33445777777777676665 5676654
No 144
>PRK06922 hypothetical protein; Provisional
Probab=98.69 E-value=2.8e-07 Score=93.53 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=67.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..++..+|.+|||+|||+|..+..+++.. +.++|+|+|+++.+++.+++++...+. ++.++++|+.+++...+ .++|
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fe-deSF 488 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFE-KESV 488 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccC-CCCE
Confidence 34555678999999999999988888875 458999999999999999998876653 58889999887652221 2579
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|+|++.++
T Consensus 489 DvVVsn~v 496 (677)
T PRK06922 489 DTIVYSSI 496 (677)
T ss_pred EEEEEchH
Confidence 99997654
No 145
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.68 E-value=8.7e-08 Score=90.50 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=65.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEe-ccCCCCCCCC-CCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLH-GDFLNLDPKD-PAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~-v~~~~-~D~~~~~~~~-~~~~~fD~ 212 (337)
.+.+|||+|||+|.....++.... ..+++|+|+|+.+++.+++|++.+ ++.+ |.++. .|...+.... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 568999999999999988887654 478999999999999999999999 7864 77754 3433332111 11257999
Q ss_pred EEECCCCCCcc
Q 019692 213 ILLDPSCSGSG 223 (337)
Q Consensus 213 IlvDpPCSg~G 223 (337)
|+++||.-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999966543
No 146
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.68 E-value=1.8e-07 Score=79.99 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=60.7
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+|||+|||.|.....|++-- =.+.++++|-++.+++.|+..+++.|++| |++.+.|....... .++||+|+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~---~~qfdlvl 141 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL---SGQFDLVL 141 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc---ccceeEEe
Confidence 499999999999988888752 24679999999999999999999999988 99999999876432 25788776
No 147
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.68 E-value=2.5e-07 Score=88.12 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++.. ..+++++.+|+.+.+... +.||+|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~---~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT---DYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC---CceeEEEE
Confidence 4688999999999999998888763 4789999999999999998764 346888999998765432 57999997
Q ss_pred C
Q 019692 216 D 216 (337)
Q Consensus 216 D 216 (337)
.
T Consensus 185 ~ 185 (340)
T PLN02490 185 A 185 (340)
T ss_pred c
Confidence 3
No 148
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.67 E-value=1.6e-07 Score=84.15 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=62.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. ..+|+|+|+++.++..+++++...+. .++.+.++|+.+.+ .+||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 457899999999999999999874 35899999999999999999988776 46999999987764 469999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 124 i~ 125 (219)
T TIGR02021 124 VC 125 (219)
T ss_pred EE
Confidence 85
No 149
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.67 E-value=3.2e-07 Score=82.29 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=76.8
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.++++++..|+. ++.++..|+...+.. ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~-- 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFG-- 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeeh--
Confidence 379999999999999998875 3478999999999999999999998875 489999998654321 46999984
Q ss_pred CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 218 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 218 PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+++..- .-...+++.+.+++++ |.++.++
T Consensus 74 ----~~~l~~~--------------------------~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 74 ----FEVIHHI--------------------------KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ----HHHHHhC--------------------------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 1222110 0124678888888887 7777654
No 150
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=4.5e-07 Score=78.78 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=105.1
Q ss_pred hHHHHHHh------CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~l------~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.++ .+++|++||=+||++|....|++..++ .|.|+|+|.+++..+.+-..+++. +||..+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCC
Confidence 45555553 367899999999999999999999987 799999999999999998888774 689999999987
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH-HHHhCCCCC-c--EEEE
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL-RHALSFPGV-E--RVVY 275 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL-~~A~~~~~~-G--~lvY 275 (337)
......-.+.+|+|+.|.. -|+ |.+|+ .+|-.|++. | .++-
T Consensus 136 P~~Y~~~Ve~VDviy~DVA---------Qp~--------------------------Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA---------QPN--------------------------QAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC---------Cch--------------------------HHHHHHHHHHHhcccCCeEEEEE
Confidence 7655433467999999976 111 45554 455567775 6 4555
Q ss_pred EcCCCCcccC-HHHHHHHhchhcCCCcEEec
Q 019692 276 STCSIHQVEN-EDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 276 sTCS~~~~EN-e~vv~~~l~~~~~~~~~~~~ 305 (337)
=.-|+.-.+. +.|.+.-++.-...+|++..
T Consensus 181 KArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 181 KARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 5778877666 44445455544566677654
No 151
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.65 E-value=3e-07 Score=83.03 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=82.8
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
++...+.+.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. ++.++..|+....... .
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 112 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH--P 112 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc--C
Confidence 4444455667899999999999999888775 36899999999999999999888776 5788888877664222 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||+|++.-..... ++ ...+|+.+.+++++ |.++.+++.
T Consensus 113 ~~fD~Ii~~~~l~~~------~~--------------------------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 113 GQFDVVTCMEMLEHV------PD--------------------------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCccEEEEhhHhhcc------CC--------------------------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 579999974321111 00 13567777777776 888877664
No 152
>PRK00811 spermidine synthase; Provisional
Probab=98.63 E-value=3.5e-07 Score=85.35 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
...+|||+|||.|+.+..+++. .+..+|+++|+|+.+++.+++.+...+ -++++++.+|+..+.... .++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCccc
Confidence 4679999999999999888765 234689999999999999999987643 246999999998765432 25799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++|.+
T Consensus 153 vIi~D~~ 159 (283)
T PRK00811 153 VIIVDST 159 (283)
T ss_pred EEEECCC
Confidence 9999974
No 153
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.62 E-value=1.7e-07 Score=83.36 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++... +...++|+|+|+.+++.+++++ .++.+.++|+.+ +.. .++||+|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~---~~sfD~V 109 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFK---DNFFDLV 109 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCC---CCCEEEE
Confidence 34568899999999999999998875 3478999999999999998764 346778888876 322 2579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 110 ~~ 111 (204)
T TIGR03587 110 LT 111 (204)
T ss_pred EE
Confidence 95
No 154
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=83.14 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=69.2
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
+.++.-+.++. .+.+-.+|.|+|||||..|-.+++.. +...|+|+|.|+.|++.+++.+ .++++..+|..+..
T Consensus 16 tRPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~ 88 (257)
T COG4106 16 TRPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK 88 (257)
T ss_pred cCcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC
Confidence 44455555543 45667899999999999999999997 4589999999999999986663 57899999999887
Q ss_pred CCCCCCCCccEEEECCC
Q 019692 202 PKDPAYSEVRAILLDPS 218 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpP 218 (337)
+. ..+|+|+.++-
T Consensus 89 p~----~~~dllfaNAv 101 (257)
T COG4106 89 PE----QPTDLLFANAV 101 (257)
T ss_pred CC----Cccchhhhhhh
Confidence 65 45889988765
No 155
>PRK03612 spermidine synthase; Provisional
Probab=98.61 E-value=1.9e-07 Score=94.26 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=88.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HHHh-----CCCcEEEEeccCCCCCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLS-----GAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~--~~~~-----g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
.+..+|||+|||+|..+..+++. .+..+|+++|+|+++++.++++ +... .-++++++.+|+.++..... +
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~--~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA--E 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC--C
Confidence 45679999999999999888764 2236999999999999999984 3322 12469999999987643322 5
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENED 287 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~ 287 (337)
+||+|++|+|.... +. ..+ -...+.++.+.+.+++ |.++..++|.. ...+
T Consensus 373 ~fDvIi~D~~~~~~------~~----------------~~~-----L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~ 423 (521)
T PRK03612 373 KFDVIIVDLPDPSN------PA----------------LGK-----LYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPK 423 (521)
T ss_pred CCCEEEEeCCCCCC------cc----------------hhc-----cchHHHHHHHHHhcCCCeEEEEecCCcc--cchH
Confidence 79999999874320 00 000 0124667777777887 67666555433 3344
Q ss_pred HHHHHhchhcCCCcE
Q 019692 288 VIKSVLPIAMSFGFQ 302 (337)
Q Consensus 288 vv~~~l~~~~~~~~~ 302 (337)
....+.+..++.||.
T Consensus 424 ~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 424 AFWSIEATLEAAGLA 438 (521)
T ss_pred HHHHHHHHHHHcCCE
Confidence 444444433445563
No 156
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.61 E-value=1.5e-07 Score=83.56 Aligned_cols=132 Identities=25% Similarity=0.243 Sum_probs=103.2
Q ss_pred hHHHHHHh------CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~l------~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.++ -++||.+||=+||++|..-.|++..+++.+.|||+|.+...=+.+...+++. .||..+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 56666554 3689999999999999999999999999999999999999888888877764 589999999998
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHHhCCCCC-c-EEEE-
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK-ALRHALSFPGV-E-RVVY- 275 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-lL~~A~~~~~~-G-~lvY- 275 (337)
..........+|+||.|.+ .|| |.. +..+|..||+. | .++|
T Consensus 217 P~KYRmlVgmVDvIFaDva---------qpd--------------------------q~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA---------QPD--------------------------QARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred chheeeeeeeEEEEeccCC---------Cch--------------------------hhhhhhhhhhhhhccCCeEEEEE
Confidence 7665443457899999988 333 223 33456667875 5 4444
Q ss_pred -EcCCCCcccCHHHHHHHhc
Q 019692 276 -STCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 276 -sTCS~~~~ENe~vv~~~l~ 294 (337)
+.|+-....+|.|.+.-.+
T Consensus 262 kancidstv~ae~vFa~Ev~ 281 (317)
T KOG1596|consen 262 KANCIDSTVFAEAVFAAEVK 281 (317)
T ss_pred ecccccccccHHHHHHHHHH
Confidence 3798888999999876654
No 157
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.61 E-value=1e-07 Score=72.71 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=69.2
Q ss_pred EeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCC
Q 019692 142 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 142 LDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg 221 (337)
||+|||+|..+..+++. +...|+++|+++.+++.++++.... ++.+..+|+.+++..+ ++||.|++--
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~---~sfD~v~~~~---- 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD---NSFDVVFSNS---- 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T---T-EEEEEEES----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc---cccccccccc----
Confidence 89999999999999997 4689999999999999999987654 3669999999997554 6899998521
Q ss_pred ccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEE
Q 019692 222 SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVV 274 (337)
Q Consensus 222 ~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lv 274 (337)
++.. + +-+..+++++.+.+++ |.++
T Consensus 69 --~~~~-------------------------~-~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 69 --VLHH-------------------------L-EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --HGGG-------------------------S-SHHHHHHHHHHHHEEEEEEEE
T ss_pred --ceee-------------------------c-cCHHHHHHHHHHHcCcCeEEe
Confidence 1110 0 2246788899888887 6665
No 158
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.61 E-value=3.7e-07 Score=81.76 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=79.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++.. ...++++|+++.+++.+++++...+..++.+...|+.+.+... ..+||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEeh
Confidence 4789999999999999888774 2579999999999999999999887767889999987765432 2579999963
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
-. +..- .-...+|..+.+.+++ |.++.+++.
T Consensus 120 ~~------l~~~--------------------------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EV------LEHV--------------------------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hH------HHhC--------------------------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 21 1100 0124677888777776 777777663
No 159
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.61 E-value=9.9e-08 Score=83.09 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=77.8
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
-|.+-.+++...|.-..-.++||+|||.|..|..||... .+++++|+++.+++.+++++.. .++|++.+.|+...
T Consensus 27 E~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~ 101 (201)
T PF05401_consen 27 ERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF 101 (201)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-
T ss_pred HHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC
Confidence 343334444444555556799999999999999998874 6899999999999999999874 47899999998766
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+. ++||.|+ ||..+..=. ..++ ....++.....+.+ |.||..+
T Consensus 102 ~P~----~~FDLIV----~SEVlYYL~------------------~~~~-------L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 102 WPE----GRFDLIV----LSEVLYYLD------------------DAED-------LRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp --S----S-EEEEE----EES-GGGSS------------------SHHH-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC----CCeeEEE----EehHhHcCC------------------CHHH-------HHHHHHHHHHHhCCCCEEEEEE
Confidence 433 6899999 455543210 1122 23455666666666 8999853
No 160
>PRK01581 speE spermidine synthase; Validated
Probab=98.60 E-value=3e-07 Score=87.67 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=60.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HH---Hh--CCCcEEEEeccCCCCCCCCCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IK---LS--GAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~--~~---~~--g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+||++|+|.|+.+..+.+. .+..+|+++|+|+++++.+++. +. +. .-++++++.+|+..+.... .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CCC
Confidence 3469999999999977666654 3447999999999999999962 21 21 2356999999998865433 257
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
||+|++|.|
T Consensus 227 YDVIIvDl~ 235 (374)
T PRK01581 227 YDVIIIDFP 235 (374)
T ss_pred ccEEEEcCC
Confidence 999999987
No 161
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.60 E-value=3.3e-07 Score=91.58 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=82.4
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
|......+...+...++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.+++... ...+++++++|+....
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPD 96 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccc
Confidence 3333445556666677889999999999999999986 3689999999999987654221 2357999999986432
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
...+ .++||+|++..+..-. +.+. ...+|....+.+++ |.+++.-
T Consensus 97 ~~~~-~~~fD~I~~~~~l~~l-----------------------~~~~-------~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 97 LNIS-DGSVDLIFSNWLLMYL-----------------------SDKE-------VENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred cCCC-CCCEEEEehhhhHHhC-----------------------CHHH-------HHHHHHHHHHhcCCCeEEEEEe
Confidence 2111 2579999987653211 1111 14678888887776 7776653
No 162
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.60 E-value=1.1e-07 Score=88.87 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=75.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PAY 207 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~~ 207 (337)
..+|.+++|+.++|+.+|-||.|..|+..+++ ++|+|+|.|+.+++.++++++.++ +++.++++++.++.... ...
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45567889999999999999999999998764 999999999999999999998764 56999999998865322 123
Q ss_pred CCccEEEECCCCCC
Q 019692 208 SEVRAILLDPSCSG 221 (337)
Q Consensus 208 ~~fD~IlvDpPCSg 221 (337)
.++|.|++|--+|+
T Consensus 91 ~~vDgIl~DLGvSS 104 (305)
T TIGR00006 91 TKIDGILVDLGVSS 104 (305)
T ss_pred CcccEEEEeccCCH
Confidence 57999999988884
No 163
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=5.2e-07 Score=80.01 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=82.9
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~ 197 (337)
..+-+...+++..++..-...++||+|.-+|+.++.+|..+..+|+|+++|+++...+...+..+..|+.. |+++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 44555666777777777778899999999999999999999999999999999999999999999999865 99999987
Q ss_pred CCCCCC---CCCCCCccEEEECCC
Q 019692 198 LNLDPK---DPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~---~~~~~~fD~IlvDpP 218 (337)
.+.... +...++||++|+|+-
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccc
Confidence 654311 112578999999975
No 164
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.59 E-value=4.7e-07 Score=80.99 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=56.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~------------~g~~~v~~~~~D~~~~~~~ 203 (337)
.++.+|||+|||.|.-+..||+. +..|+|+|+|+.+++.+...... ..-.+|+++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57889999999999999999985 46899999999999976432110 0113588999999887643
Q ss_pred CCCCCCccEEEE
Q 019692 204 DPAYSEVRAILL 215 (337)
Q Consensus 204 ~~~~~~fD~Ilv 215 (337)
. ..+||.|+-
T Consensus 110 ~--~~~fD~i~D 119 (213)
T TIGR03840 110 D--LGPVDAVYD 119 (213)
T ss_pred c--CCCcCEEEe
Confidence 2 246888863
No 165
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.58 E-value=1.6e-07 Score=84.71 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCCCCCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~----~v~~~~~D~~~~~~~~~~~~ 208 (337)
+..|.+|||+|||.|-.+.+||++ +..|+|+|+++.+++.+++..+.... . .+++.+.|++... +
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~ 157 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------G 157 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------c
Confidence 344788999999999999999998 47999999999999999999443322 1 2445555655443 4
Q ss_pred CccEEEE
Q 019692 209 EVRAILL 215 (337)
Q Consensus 209 ~fD~Ilv 215 (337)
.||.|+|
T Consensus 158 ~fDaVvc 164 (282)
T KOG1270|consen 158 KFDAVVC 164 (282)
T ss_pred ccceeee
Confidence 5999983
No 166
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.58 E-value=2.6e-08 Score=77.67 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred EeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 142 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 142 LDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
||+|||+|..+..+.+.. +..+++++|+|+.+++.+++++...+..+...+..+..+...... .++||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP-PESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC-----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc-ccccceehh
Confidence 799999999999999886 568999999999999999999998876665566555554433322 158999995
No 167
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.56 E-value=2.6e-07 Score=84.77 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=68.6
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
...++..++..++++|||+|||+|..|..+++.. ..|+++|+|+.+++.+++++.. ..+++++++|+...+..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--
Confidence 3445556677889999999999999999999874 4699999999999999988754 35799999999887643
Q ss_pred CCCCcc---EEEECCCC
Q 019692 206 AYSEVR---AILLDPSC 219 (337)
Q Consensus 206 ~~~~fD---~IlvDpPC 219 (337)
.+| .|+.++|.
T Consensus 91 ---~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ---DFPKQLKVVSNLPY 104 (253)
T ss_pred ---HcCCcceEEEcCCh
Confidence 345 99999984
No 168
>PRK06202 hypothetical protein; Provisional
Probab=98.56 E-value=2.6e-07 Score=83.60 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~---~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
..+...++.+|||+|||+|..+..++.... ...+|+|+|+++.+++.++++....+ +.+...++..++.. .
T Consensus 54 ~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~~~---~ 127 (232)
T PRK06202 54 PALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELVAE---G 127 (232)
T ss_pred HhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEeccccccc---C
Confidence 334445678999999999999998887542 23589999999999999988765443 45555555444432 2
Q ss_pred CCccEEEEC
Q 019692 208 SEVRAILLD 216 (337)
Q Consensus 208 ~~fD~IlvD 216 (337)
++||+|++.
T Consensus 128 ~~fD~V~~~ 136 (232)
T PRK06202 128 ERFDVVTSN 136 (232)
T ss_pred CCccEEEEC
Confidence 579999963
No 169
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.54 E-value=5.9e-07 Score=83.28 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=84.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+.+||++|||.|+.+..+++.. +..+|+++|+++.+++.+++++...+ ..+++++.+|+..+.... .++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccE
Confidence 34599999999999888777653 34689999999999999999886643 245888888887654322 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
|++|++-. .+. ... + ...+.++.+.+.+++ |.++..++|.. -+...+..
T Consensus 149 Ii~D~~~~-~~~----------------------~~~---l--~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~ 198 (270)
T TIGR00417 149 IIVDSTDP-VGP----------------------AET---L--FTKEFYELLKKALNEDGIFVAQSESPW--IQLELITD 198 (270)
T ss_pred EEEeCCCC-CCc----------------------ccc---h--hHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHH
Confidence 99998732 111 000 0 124566677777776 88887766533 33445444
Q ss_pred Hh
Q 019692 292 VL 293 (337)
Q Consensus 292 ~l 293 (337)
++
T Consensus 199 ~~ 200 (270)
T TIGR00417 199 LK 200 (270)
T ss_pred HH
Confidence 33
No 170
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.54 E-value=1.4e-06 Score=81.97 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=53.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL 200 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~ 200 (337)
.++.+|||+|||+|.+|..+++.+....+++++|+|++|++.+++++..... -+|..+++|+.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 4678999999999999999998864347899999999999999999876431 2377889998764
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.54 E-value=6.5e-08 Score=85.67 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=93.6
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~ 208 (337)
....++.|++|||.|.|-|+.++..++. +...|+.+|.|+..++.+.-|--..++ .+|+++.+|+.++..... ..
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-D~ 204 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-DE 204 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-cc
Confidence 4456778999999999999988866664 445999999999999987766443333 248999999988765543 36
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEE-EEEcCCCCcccCH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERV-VYSTCSIHQVENE 286 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~l-vYsTCS~~~~ENe 286 (337)
+||+|+-|||..+... .+ .-.++-+.-++.+++ |+| =|+.-.-..--.-
T Consensus 205 sfDaIiHDPPRfS~Ag------------------------eL-----YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~ 255 (287)
T COG2521 205 SFDAIIHDPPRFSLAG------------------------EL-----YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL 255 (287)
T ss_pred ccceEeeCCCccchhh------------------------hH-----hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC
Confidence 7999999999544321 00 113455555666665 554 4554433333333
Q ss_pred HHHHHHhchhcCCCcEEecC
Q 019692 287 DVIKSVLPIAMSFGFQLATP 306 (337)
Q Consensus 287 ~vv~~~l~~~~~~~~~~~~~ 306 (337)
++-..+.+.-..-||+.+.-
T Consensus 256 d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 256 DLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred ChhHHHHHHHHhcCceeeee
Confidence 33333333335678886543
No 172
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=81.64 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=62.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+.|+|+|+|-.+...|.. ..+|+|+|.++.+.+.+++|+.-.|..|++++.+|+.++.. .+.|+|+|.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHHH
Confidence 379999999999999888776 36899999999999999999998999999999999998763 467899864
No 173
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.53 E-value=3.9e-07 Score=86.15 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+|.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..+ ..++.+...|...+. ++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~------~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS------GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC------CCcC
Confidence 5789999999999999999875 3689999999999999999988753 235788888875442 5699
Q ss_pred EEEE
Q 019692 212 AILL 215 (337)
Q Consensus 212 ~Ilv 215 (337)
+|++
T Consensus 215 ~Vv~ 218 (315)
T PLN02585 215 TVTC 218 (315)
T ss_pred EEEE
Confidence 9984
No 174
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.53 E-value=5.8e-07 Score=83.38 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~--g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+.+|||+|||+|..+..++...... ..|+|+|+|+.+++.++++ ..++.+..+|+.+++..+ ++||+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~~---~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFAD---QSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCcC---CceeEE
Confidence 456789999999999999998876432 3799999999999998765 246889999998876543 579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
+.
T Consensus 156 ~~ 157 (272)
T PRK11088 156 IR 157 (272)
T ss_pred EE
Confidence 84
No 175
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.50 E-value=6.4e-08 Score=84.96 Aligned_cols=87 Identities=20% Similarity=0.354 Sum_probs=72.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCC-CCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDP-AYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~-~~~~fD~Il 214 (337)
..+.|+|..||.||-|++.|.. ...|+++|+|+-++..+++|++-+|+++ |+++++|+.+...... ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 4678999999999999999886 3689999999999999999999999976 9999999876542210 012478999
Q ss_pred ECCCCCCccccC
Q 019692 215 LDPSCSGSGTAA 226 (337)
Q Consensus 215 vDpPCSg~G~~~ 226 (337)
.-||-+|.|-.+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988764
No 176
>PRK05785 hypothetical protein; Provisional
Probab=98.49 E-value=4.1e-07 Score=82.14 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=54.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..+..+++.. .+.|+|+|+|++|++.+++.. ..+++|+.+++..+ ++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999998875 369999999999999987641 34678888886543 68999996
No 177
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.49 E-value=7.3e-07 Score=80.13 Aligned_cols=71 Identities=24% Similarity=0.384 Sum_probs=59.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. +++.+..+|+... .+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEE
Confidence 56789999999999999988875 25799999999999999999988877 4689999984321 25699998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 133 ~ 133 (230)
T PRK07580 133 C 133 (230)
T ss_pred E
Confidence 6
No 178
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.48 E-value=3.7e-07 Score=82.21 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=90.5
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-.+||+|||.|...+++|.. .+...++|||+....+..+.+.+.+.|++|+.+++.|+..+.......++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999999998 56678999999999999999999999999999999999877655433357899998766
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
.|. +... ..+---+|...|+...+.|++ |.|-+. .-|++..++
T Consensus 129 ---------DPW---pKkR------------H~KRRl~~~~fl~~~a~~Lk~gG~l~~a------TD~~~y~e~ 172 (227)
T COG0220 129 ---------DPW---PKKR------------HHKRRLTQPEFLKLYARKLKPGGVLHFA------TDNEEYFEW 172 (227)
T ss_pred ---------CCC---CCcc------------ccccccCCHHHHHHHHHHccCCCEEEEE------ecCHHHHHH
Confidence 222 2111 101112356778787777777 555443 346666666
No 179
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=2.9e-06 Score=72.88 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=91.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCC------CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLD------PKDPAY 207 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~------~~~~~~ 207 (337)
++|+++|||+||+||.++...-+..++.|.|.+||+-.- .....++++.+ |+++.. ...+ .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp-~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALP-N 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCC-C
Confidence 367999999999999999988889889999999998531 12344666666 665532 1112 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
..+|+|+.|.---.+|+ ...+..++.++-...|.-|+.++.+ |.+| |-+...+.+
T Consensus 135 r~VdvVlSDMapnaTGv---------------------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~ 190 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGV---------------------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEE 190 (232)
T ss_pred CcccEEEeccCCCCcCc---------------------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCch
Confidence 57999999977666664 2334556777778888999998877 8777 888887777
Q ss_pred HHHHHHhc
Q 019692 287 DVIKSVLP 294 (337)
Q Consensus 287 ~vv~~~l~ 294 (337)
.-.++-|.
T Consensus 191 ~~l~r~l~ 198 (232)
T KOG4589|consen 191 ALLQRRLQ 198 (232)
T ss_pred HHHHHHHH
Confidence 77777664
No 180
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.43 E-value=1.8e-07 Score=82.48 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=89.0
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
..+||+|||.|...+.+|..- +...++|+|+...++..+.+.+.+.+++|+.++++|+..+.......+++|.|.+.=|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999984 6689999999999999999999999999999999999874322111257899998766
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhchh-c
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIA-M 297 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~-~ 297 (337)
+ | |+..... ..| -.|...|....+.|++|..+| ...-++...+..++.. .
T Consensus 98 D---------P---WpK~rH~-krR-----------l~~~~fl~~~~~~L~~gG~l~-----~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 98 D---------P---WPKKRHH-KRR-----------LVNPEFLELLARVLKPGGELY-----FATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ----------------SGGGG-GGS-----------TTSHHHHHHHHHHEEEEEEEE-----EEES-HHHHHHHHHHHHH
T ss_pred C---------C---Ccccchh-hhh-----------cCCchHHHHHHHHcCCCCEEE-----EEeCCHHHHHHHHHHHHh
Confidence 3 2 1111000 001 123566666666677644443 3334566666666532 2
Q ss_pred -CCCcEEe
Q 019692 298 -SFGFQLA 304 (337)
Q Consensus 298 -~~~~~~~ 304 (337)
+.+|+..
T Consensus 149 ~~~~f~~~ 156 (195)
T PF02390_consen 149 SHPGFENI 156 (195)
T ss_dssp HSTTEEEE
T ss_pred cCcCeEEc
Confidence 4678776
No 181
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.43 E-value=4.5e-06 Score=74.93 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=62.0
Q ss_pred chhhHHHHHH--hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH------------HhCCC
Q 019692 123 GKASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK------------LSGAA 188 (337)
Q Consensus 123 d~ss~l~~~~--l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~------------~~g~~ 188 (337)
.+...+...+ +.+.++.+|||+|||.|.-+..||+. +..|+|+|+++.+++.+..... .....
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccC
Confidence 3444444433 24456889999999999999999984 4689999999999998642110 11123
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+|++.++|+.++.+.. ...||.|+
T Consensus 98 ~v~~~~~D~~~l~~~~--~~~fd~v~ 121 (218)
T PRK13255 98 EITIYCGDFFALTAAD--LADVDAVY 121 (218)
T ss_pred ceEEEECcccCCCccc--CCCeeEEE
Confidence 5889999999886543 25788887
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.3e-06 Score=79.67 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=75.2
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
..-++..+++.+++.||++|+|.|..|..+++.. .+|+|+|+|+..+..+++.+. ...|++++++|+...+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh
Confidence 3456677788899999999999999999999973 689999999999999999876 34689999999998875431
Q ss_pred CCCCccEEEECCCCCCc
Q 019692 206 AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~ 222 (337)
..++.|+.+-|..=+
T Consensus 94 --~~~~~vVaNlPY~Is 108 (259)
T COG0030 94 --AQPYKVVANLPYNIS 108 (259)
T ss_pred --cCCCEEEEcCCCccc
Confidence 157899999997643
No 183
>PLN02366 spermidine synthase
Probab=98.41 E-value=2.8e-06 Score=80.13 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
....+||++|+|.|+.+..+++. .+..+|+.+|+++..++.+++.+...+ . ++++++.+|+..+....+ .++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CCCCC
Confidence 34689999999999999888875 334689999999999999999886542 2 459999999876643221 25799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++|.+
T Consensus 168 vIi~D~~ 174 (308)
T PLN02366 168 AIIVDSS 174 (308)
T ss_pred EEEEcCC
Confidence 9999976
No 184
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.38 E-value=2.2e-06 Score=89.67 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=80.1
Q ss_pred CCchhhhcCeEEEechhh---HHHHH---HhCC-CCCCeEEeecCCchhHHHHHHHHcC---------------------
Q 019692 109 HVHPLIVNGCVFLQGKAS---SMVAA---ALAP-KPGWKVLDACSAPGNKTVHLAALMK--------------------- 160 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss---~l~~~---~l~~-~~g~~VLDl~aG~G~kt~~la~~~~--------------------- 160 (337)
...++++.|+-..+.++. .+++. +... +++..++|.+||+|.+.+..|....
T Consensus 155 sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~ 234 (702)
T PRK11783 155 SGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDE 234 (702)
T ss_pred CCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCH
Confidence 344667777655444442 22322 2233 5688999999999988777665311
Q ss_pred --------------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 161 --------------------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 161 --------------------~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
...+|+|+|+++.+++.+++|++.+|+.+ |.+.++|+.++..... .+.||+|++|||.
T Consensus 235 ~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-~~~~d~IvtNPPY 313 (702)
T PRK11783 235 ALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-KGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-cCCCCEEEECCCC
Confidence 12369999999999999999999999965 8999999988764321 2469999999995
No 185
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.37 E-value=1.4e-06 Score=78.20 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.|.+||=+ |-...+.....+.+...+|+.+|+|++.++..++.+++.|++ |+.++.|+++..+..- .++||+++.|
T Consensus 44 ~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE-
T ss_pred cCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEeC
Confidence 47889844 566655544445566689999999999999999999999998 9999999998765542 4789999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc-CH-HHHHHHh
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE-NE-DVIKSVL 293 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E-Ne-~vv~~~l 293 (337)
||.+-.|+ .-.|.++++.+++ |..+|-..|..+.- .+ ..|++++
T Consensus 120 PPyT~~G~---------------------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l 166 (243)
T PF01861_consen 120 PPYTPEGL---------------------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFL 166 (243)
T ss_dssp --SSHHHH---------------------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHH
T ss_pred CCCCHHHH---------------------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHH
Confidence 99776664 3567788887775 75667666654321 11 2466666
Q ss_pred chhcCCCcEEec
Q 019692 294 PIAMSFGFQLAT 305 (337)
Q Consensus 294 ~~~~~~~~~~~~ 305 (337)
- +.||.+..
T Consensus 167 ~---~~gl~i~d 175 (243)
T PF01861_consen 167 L---EMGLVITD 175 (243)
T ss_dssp H---TS--EEEE
T ss_pred H---HCCcCHHH
Confidence 2 45666543
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.2e-06 Score=73.39 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
....++|+|||+|..+..+++...+.....|.|+|+++++...+.++.+++. +.++..|....... +++|+++.+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~----~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRN----ESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhcc----CCccEEEEC
Confidence 3678999999999999999999888888999999999999999999988875 88889887765432 689999999
Q ss_pred CCC
Q 019692 217 PSC 219 (337)
Q Consensus 217 pPC 219 (337)
||.
T Consensus 118 PPY 120 (209)
T KOG3191|consen 118 PPY 120 (209)
T ss_pred CCc
Confidence 995
No 187
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.35 E-value=2e-06 Score=79.51 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCCeEEeecCCchh----HHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHHHH----HhC-----------------
Q 019692 136 KPGWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDTIK----LSG----------------- 186 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~----kt~~la~~~~~----~g~V~avD~~~~~l~~l~~~~~----~~g----------------- 186 (337)
.++.+|||+|||+|. .+..+++.... ..+|+|+|+|+.+++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 44455554332 4689999999999999998531 001
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 187 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 187 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
+ .+|++.++|..+.++. .++||+|+| .. ++.. .+ ...|.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~c----rn--vl~y-----------------f~-------~~~~~~~ 224 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPP---LGDFDLIFC----RN--VLIY-----------------FD-------EPTQRKL 224 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCc---cCCCCEEEe----ch--hHHh-----------------CC-------HHHHHHH
Confidence 1 2588999999886542 367999994 32 2110 01 1235688
Q ss_pred HHHHhCCCCC-cEEEE
Q 019692 261 LRHALSFPGV-ERVVY 275 (337)
Q Consensus 261 L~~A~~~~~~-G~lvY 275 (337)
++...+.+++ |.++.
T Consensus 225 l~~l~~~L~pGG~L~l 240 (264)
T smart00138 225 LNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 8888888887 66654
No 188
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.34 E-value=4.6e-06 Score=84.46 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=72.1
Q ss_pred CeEEEechhhHHHHHHhCCC-------CCCeEEeecCCchhHHHHHHHHcCC-------CCEEEEEeCCHHHHHHHHHHH
Q 019692 117 GCVFLQGKASSMVAAALAPK-------PGWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~-------~g~~VLDl~aG~G~kt~~la~~~~~-------~g~V~avD~~~~~l~~l~~~~ 182 (337)
|.|+-...-+.+++..+... .+.+|||.|||+|++...++..+.. .-.++++|+++..+..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 44444444444444443222 3458999999999999988876631 246899999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCCC--CCCCCCccEEEECCCCCCcc
Q 019692 183 KLSGAANIEVLHGDFLNLDPK--DPAYSEVRAILLDPSCSGSG 223 (337)
Q Consensus 183 ~~~g~~~v~~~~~D~~~~~~~--~~~~~~fD~IlvDpPCSg~G 223 (337)
..++...+.+.+.|+...... ....+.||+|+.+||.....
T Consensus 84 ~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 84 GEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred hhcCCCCceeeecccccccccccccccCcccEEEeCCCccccC
Confidence 887633356666665432211 11135799999999977653
No 189
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.30 E-value=9.4e-05 Score=68.75 Aligned_cols=115 Identities=16% Similarity=0.123 Sum_probs=75.0
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+..-.|.+|||+|||.|+.+..|+.. +...|+|+|.+..-+-..+-.-+-.|.++ +..+..-.++++. .+.||
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FD 184 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFD 184 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcC
Confidence 33446999999999999999999885 56789999999887766544444445443 3333334455543 26799
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCcccC
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVEN 285 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~G~lvYsTCS~~~~EN 285 (337)
.||+ .|++-++.+- ...|......++ +|.||.=|--+.-+++
T Consensus 185 tVF~------MGVLYHrr~P--------------------------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 185 TVFS------MGVLYHRRSP--------------------------LDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEEE------eeehhccCCH--------------------------HHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 9994 6777543221 344555555444 4888876665554444
No 190
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.29 E-value=9e-06 Score=71.72 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=63.9
Q ss_pred CeEEEechhhHHHHHHhCCCC--CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 117 GCVFLQGKASSMVAAALAPKP--GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~--g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
.-..+|-+-+.-+..+|+..+ ..-|||+|||+|-.+..+.+- ....+++|+|+.|++.+.+. .+. -.++.
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e---gdlil 99 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE---GDLIL 99 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh---cCeee
Confidence 446788888877778877766 678999999999887766542 35789999999999999862 221 13566
Q ss_pred ccCCCCCCCCCCCCCccEEEE
Q 019692 195 GDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|.-.-.+.. .++||.+|.
T Consensus 100 ~DMG~Glpfr--pGtFDg~IS 118 (270)
T KOG1541|consen 100 CDMGEGLPFR--PGTFDGVIS 118 (270)
T ss_pred eecCCCCCCC--CCccceEEE
Confidence 6654433332 278998874
No 191
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.28 E-value=2.5e-07 Score=80.44 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=49.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CC-CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DP-AYSE 209 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~-~~~~ 209 (337)
.+.+|||+||+|||++..+.+..+..++|+|+|+.+. ....++..+.+|..+.... .. ....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 4589999999999999999887655689999999876 2235577777776543211 00 1257
Q ss_pred ccEEEECC--CCCCc
Q 019692 210 VRAILLDP--SCSGS 222 (337)
Q Consensus 210 fD~IlvDp--PCSg~ 222 (337)
||+|++|. +|+|.
T Consensus 92 ~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD 106 (181)
T ss_dssp ESEEEE-------SS
T ss_pred cceeccccccCCCCc
Confidence 99999998 45553
No 192
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.25 E-value=2.9e-06 Score=71.32 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=69.4
Q ss_pred hHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
+.++..++. ..++.+|||+|||+|..+..++.. ..+|+++|+++.+++. .++.....+.......
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~- 75 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP- 75 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH-
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc-
Confidence 344455554 567899999999999999988665 2499999999999987 2233333322222221
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.++||+|++- .++..-+| ...+|+...+++++ |.++.++-.
T Consensus 76 --~~~fD~i~~~------~~l~~~~d--------------------------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 --DGSFDLIICN------DVLEHLPD--------------------------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --SSSEEEEEEE------SSGGGSSH--------------------------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --ccchhhHhhH------HHHhhccc--------------------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 2689999963 12221111 24788888888887 777666543
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6e-06 Score=72.30 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=70.8
Q ss_pred HHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEE-EEEeCCHHHHHHHHHHHHHhC----------CCcEEEEeccC
Q 019692 131 AALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSG----------AANIEVLHGDF 197 (337)
Q Consensus 131 ~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V-~avD~~~~~l~~l~~~~~~~g----------~~~v~~~~~D~ 197 (337)
..|+ ++||...||+|+|+|+.|..++.+++..|.+ ++||..++.++..++|+.+.- ..++.++.+|.
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 4455 7899999999999999999999988777764 999999999999999998652 13588899999
Q ss_pred CCCCCCCCCCCCccEEEECCC
Q 019692 198 LNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpP 218 (337)
+...+.. .+||+|.|-+-
T Consensus 154 r~g~~e~---a~YDaIhvGAa 171 (237)
T KOG1661|consen 154 RKGYAEQ---APYDAIHVGAA 171 (237)
T ss_pred cccCCcc---CCcceEEEccC
Confidence 8876553 68999998654
No 194
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.24 E-value=2.5e-06 Score=74.17 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
++||.+|||+|||.|..-.++.+. .+...+++|++++.+..+.++ | +.++++|+.+-....+ .++||.|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~f~-d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLADFP-DQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhhCC-CCCccEEe
Confidence 468999999999999888777775 357899999999988766544 4 5588999876543332 36899998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 81 l 81 (193)
T PF07021_consen 81 L 81 (193)
T ss_pred h
Confidence 5
No 195
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.22 E-value=5e-06 Score=83.34 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=90.2
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEE
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAA-NIEV 192 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~ 192 (337)
|.|+--..-+.+++..+.+++..+|+|.|||+|+.-...+..+.. ...+++.|+++.....++-|+--.|+. ++..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 888888888999999999999999999999999998888888743 367999999999999999999998987 4677
Q ss_pred EeccCCCCCCCC--CCCCCccEEEECCCCCCcccc
Q 019692 193 LHGDFLNLDPKD--PAYSEVRAILLDPSCSGSGTA 225 (337)
Q Consensus 193 ~~~D~~~~~~~~--~~~~~fD~IlvDpPCSg~G~~ 225 (337)
.++|...-+... ....+||.|+.+||.|+.|-.
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccc
Confidence 777765554332 113579999999999977644
No 196
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.18 E-value=8.2e-06 Score=74.08 Aligned_cols=83 Identities=28% Similarity=0.373 Sum_probs=69.2
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~ 208 (337)
+...++++++.||++|-|||..|..|.+. +.+|+|+|+|+.++..+.++.+-....+ .+++.+|+...+. .
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-----P 122 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-----P 122 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----c
Confidence 44467899999999999999999999887 4799999999999999999987554434 9999999987652 3
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
.||.++.+-|.-
T Consensus 123 ~fd~cVsNlPyq 134 (315)
T KOG0820|consen 123 RFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeccCCcc
Confidence 489999988853
No 197
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.17 E-value=7.1e-07 Score=83.52 Aligned_cols=91 Identities=27% Similarity=0.426 Sum_probs=65.4
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---P 205 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~ 205 (337)
+...|.+++++.++|+.-|.||+|..+.+.+.+ ++|+|+|.|+.+++.++++++.+ -+++.++++++.++.... .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHcc
Confidence 355677899999999999999999999998876 99999999999999999988765 356999999998765221 1
Q ss_pred CCCCccEEEECCCCCC
Q 019692 206 AYSEVRAILLDPSCSG 221 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg 221 (337)
...++|.||+|--+|.
T Consensus 90 ~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 90 GINKVDGILFDLGVSS 105 (310)
T ss_dssp TTS-EEEEEEE-S--H
T ss_pred CCCccCEEEEccccCH
Confidence 2468999999998884
No 198
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=7.7e-06 Score=75.52 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=78.8
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 206 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 206 (337)
++..|.+++++..+|..-|-||++-.+.+.+.+.++++|+|.|+.+++.+++.+..++ .++++++.++.++..... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 4566889999999999999999999999998888999999999999999999999887 679999999887754321 2
Q ss_pred CCCccEEEECCCCCC
Q 019692 207 YSEVRAILLDPSCSG 221 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg 221 (337)
..++|.|++|---|+
T Consensus 94 i~~vDGiL~DLGVSS 108 (314)
T COG0275 94 IGKVDGILLDLGVSS 108 (314)
T ss_pred CCceeEEEEeccCCc
Confidence 368999999976553
No 199
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.07 E-value=1.4e-05 Score=70.31 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..++... ...++++|+++.+++.++. .+++++.+|+.+ +++.. .++||.|+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~--~~sfD~Vi 80 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFP--DKSFDYVI 80 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccC--CCCcCEEE
Confidence 468899999999999988887653 3578999999999988753 236778888765 22211 25799999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
+..+
T Consensus 81 ~~~~ 84 (194)
T TIGR02081 81 LSQT 84 (194)
T ss_pred EhhH
Confidence 8643
No 200
>PLN02823 spermine synthase
Probab=98.04 E-value=6.2e-05 Score=71.80 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+||.+|+|.|+.+..+.+.. +..+|+++|+|+..++.+++.+...+ -++++++.+|+..+.... .++||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEE
Confidence 4689999999999888777642 34689999999999999999886432 246999999998876433 2579999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
++|.+
T Consensus 181 i~D~~ 185 (336)
T PLN02823 181 IGDLA 185 (336)
T ss_pred EecCC
Confidence 99975
No 201
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.98 E-value=1e-05 Score=78.33 Aligned_cols=104 Identities=29% Similarity=0.309 Sum_probs=78.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+-+|||.-||+|--++..+.-+.+..+|+++|+|+++++.+++|++.+|+.. +++.+.|+..+.... ...||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~--~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR--QERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS--TT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc--cccCCEEEe
Confidence 4589999999999999999887666799999999999999999999999976 899999987764311 367999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
||= |+- .-.|+.|++.++.|.+++.|||
T Consensus 128 DPf--GSp----------------------------------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP----------------------------------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp --S--S------------------------------------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCC--CCc----------------------------------cHhHHHHHHHhhcCCEEEEecc
Confidence 985 321 2568888887777889999988
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.97 E-value=6e-05 Score=63.83 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-- 204 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-- 204 (337)
..++...+++.|--||++|.|+|-+|-.+.+.......++++|.|++-...+.+.. ..+.++++|+.++....
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhh
Confidence 34455567888999999999999999999888666678999999999998877653 44679999998876221
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.....||.|++-.|--..-+ .. -.+||+.++..++. |.+|--|-+
T Consensus 113 ~~gq~~D~viS~lPll~~P~----------------------~~--------~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPM----------------------HR--------RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcH----------------------HH--------HHHHHHHHHHhcCCCCeEEEEEec
Confidence 12346999998777222111 11 24788888887665 666655555
No 203
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.96 E-value=2.6e-05 Score=71.93 Aligned_cols=89 Identities=25% Similarity=0.360 Sum_probs=70.8
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
...++..+++.++..|||+|+|+|..|..+++.. .+|+++|+|+..++.+++... .-++++++++|+..+.....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh
Confidence 4555667788899999999999999999999874 799999999999999998766 34679999999998765431
Q ss_pred CCCCccEEEECCCC
Q 019692 206 AYSEVRAILLDPSC 219 (337)
Q Consensus 206 ~~~~fD~IlvDpPC 219 (337)
.......|+.+.|.
T Consensus 94 ~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 94 LKNQPLLVVGNLPY 107 (262)
T ss_dssp CSSSEEEEEEEETG
T ss_pred hcCCceEEEEEecc
Confidence 11245688888884
No 204
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.95 E-value=1e-05 Score=73.04 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHH
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~ 177 (337)
.+|.+|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36789999999999999999885 45799999999987764
No 205
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.93 E-value=2.3e-05 Score=78.99 Aligned_cols=80 Identities=10% Similarity=0.046 Sum_probs=66.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+-.+||+|||.|.+++.+|... +...++|+|+....+..+.+.+.+.|+.|+.++..|+..+....+ ..++|.|++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~-~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP-NNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC-cccccEEEEE
Confidence 46789999999999999999984 567899999999999999999999999999999888764443222 2568999987
Q ss_pred CC
Q 019692 217 PS 218 (337)
Q Consensus 217 pP 218 (337)
=|
T Consensus 425 FP 426 (506)
T PRK01544 425 FP 426 (506)
T ss_pred CC
Confidence 66
No 206
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.92 E-value=3.1e-05 Score=68.78 Aligned_cols=91 Identities=24% Similarity=0.338 Sum_probs=56.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEeccCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-------LSGA--ANIEVLHGDFLNL 200 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~-------~~g~--~~v~~~~~D~~~~ 200 (337)
...+++.+++..+|+|||.|...+++|... +-.+.+|||+.+...+.++...+ .+|. ..+.+.++|+.+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 355778899999999999999888777664 45679999999998877665443 3454 3588899998765
Q ss_pred CCCCCCCCCccEEEECCCCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg 221 (337)
+....-....|+|+++-=|..
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~ 134 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD 134 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-
T ss_pred HhHhhhhcCCCEEEEeccccC
Confidence 421100235799999876653
No 207
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=4.9e-05 Score=68.43 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=58.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeccCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI------------KLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~------------~~~g~~~v~~~~~D~~~~~~ 202 (337)
+.++.+||+.+||.|.-..+||+. +..|+|+|+|+.+++.+.+.. +.....+|+++++|+.+++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 346789999999999999999986 468999999999999875521 11122369999999999864
Q ss_pred CCCCCCCccEEE
Q 019692 203 KDPAYSEVRAIL 214 (337)
Q Consensus 203 ~~~~~~~fD~Il 214 (337)
.....+.||.|+
T Consensus 118 ~~~~~~~fD~Vy 129 (226)
T PRK13256 118 IANNLPVFDIWY 129 (226)
T ss_pred cccccCCcCeee
Confidence 221235799976
No 208
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=9e-05 Score=64.92 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=95.1
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~~~~~f 210 (337)
++.......||++|||||..--..- +.+..+|+++|.++.|-+.+.+.++...-.++. ++.++.++++.-. ..++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--DGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--cCCe
Confidence 3433444578999999996443221 124579999999999999999999887666777 9999999987332 3689
Q ss_pred cEEEECCC-CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 211 RAILLDPS-CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 211 D~IlvDpP-CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
|.|++.-- ||-. -+.+.|.+..++++| |++++.- |-.+.-+-
T Consensus 147 DtVV~TlvLCSve---------------------------------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~ 190 (252)
T KOG4300|consen 147 DTVVCTLVLCSVE---------------------------------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGF 190 (252)
T ss_pred eeEEEEEEEeccC---------------------------------CHHHHHHHHHHhcCCCcEEEEEe---cccccchH
Confidence 99986532 5421 145788888888887 7777743 33444455
Q ss_pred HHHHhchhcCCCcEEecCCCCCCcc
Q 019692 289 IKSVLPIAMSFGFQLATPFPNGTAE 313 (337)
Q Consensus 289 v~~~l~~~~~~~~~~~~~~~~~~~~ 313 (337)
..++++...++-|.+...--.|++.
T Consensus 191 ~n~i~q~v~ep~~~~~~dGC~ltrd 215 (252)
T KOG4300|consen 191 WNRILQQVAEPLWHLESDGCVLTRD 215 (252)
T ss_pred HHHHHHHHhchhhheeccceEEehh
Confidence 6666654445555554433334443
No 209
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.90 E-value=4.5e-05 Score=63.23 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=52.0
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
+|+|+|||.|..+..++... +.++|+++|.++..++.++++++.+++.++.+++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999998874 456999999999999999999999998888888877654
No 210
>PRK04148 hypothetical protein; Provisional
Probab=97.87 E-value=8.1e-05 Score=61.35 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=54.5
Q ss_pred HHhCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+....+.+|+|+|||+|. .+..|++. +..|+|+|+++.+++.++++ + +.++.+|..+..... +..
T Consensus 10 ~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~--y~~ 77 (134)
T PRK04148 10 ENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI--YKN 77 (134)
T ss_pred HhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH--Hhc
Confidence 33444457899999999996 66666653 46999999999988777655 3 578899988766543 467
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
+|+|..
T Consensus 78 a~liys 83 (134)
T PRK04148 78 AKLIYS 83 (134)
T ss_pred CCEEEE
Confidence 899974
No 211
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.87 E-value=6.3e-05 Score=67.75 Aligned_cols=88 Identities=30% Similarity=0.389 Sum_probs=59.5
Q ss_pred hHHHHHHhCCCCCC--eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----C-----CcEEEEe
Q 019692 126 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----A-----ANIEVLH 194 (337)
Q Consensus 126 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~-----~~v~~~~ 194 (337)
...++.++.+++|. +|||+.+|-|.-++.+|.. +++|+++|.|+-....+++-+++.. . .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34666777778775 9999999999999999875 3689999999999888887766541 1 3699999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|+.++.... ..+||+|.+||=
T Consensus 139 ~d~~~~L~~~--~~s~DVVY~DPM 160 (234)
T PF04445_consen 139 GDALEYLRQP--DNSFDVVYFDPM 160 (234)
T ss_dssp S-CCCHCCCH--SS--SEEEE--S
T ss_pred CCHHHHHhhc--CCCCCEEEECCC
Confidence 9999876521 368999999984
No 212
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.87 E-value=2.5e-05 Score=72.60 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=61.4
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|++||.|+.+..+... +-..|+++|+++.+++..+.|... . ++++|..++..... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~-~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDF-IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhc-CCCCCEEEeCCCC
Confidence 6899999999998887764 334689999999999999888632 1 56778877765431 2569999999999
Q ss_pred CCccccCc
Q 019692 220 SGSGTAAE 227 (337)
Q Consensus 220 Sg~G~~~~ 227 (337)
.+.....+
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 98776644
No 213
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.86 E-value=4.9e-05 Score=71.85 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+|.++||+||+|||+|..+.+. +.+|+|||..+ +...+. .-.+|+...+|...+.+. ...+|.|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPP---RKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCC---CCCCCEEE
Confidence 368999999999999999999886 36999999543 222222 235689999887776543 25799999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|.-|.
T Consensus 276 cDmve~ 281 (357)
T PRK11760 276 CDMVEK 281 (357)
T ss_pred EecccC
Confidence 998753
No 214
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.85 E-value=4.6e-05 Score=75.45 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=57.7
Q ss_pred CCeEEeecCCchhHHHHHHHH---cCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~---~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+..|+|+|||+|-.+...++. .+...+|+|||.++.++..+++.++++|. +.|+++++|.+++... .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 467999999999987555443 23457999999999999999988888888 4599999999998754 479999
Q ss_pred EECC
Q 019692 214 LLDP 217 (337)
Q Consensus 214 lvDp 217 (337)
+...
T Consensus 263 VSEl 266 (448)
T PF05185_consen 263 VSEL 266 (448)
T ss_dssp EE--
T ss_pred EEec
Confidence 9764
No 215
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.83 E-value=6.1e-05 Score=70.96 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=61.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
-.+..|||+|||+|-.++..|+. +..+|+|+|.+.-+ +.+++.++.+|+.+ |+++.+.++++.. + ..++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L--P-~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL--P-VEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec--C-ccceeEEe
Confidence 35889999999999988877765 46899999988765 89999999999987 8999998887732 2 46899998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
.
T Consensus 133 S 133 (346)
T KOG1499|consen 133 S 133 (346)
T ss_pred e
Confidence 4
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00013 Score=65.09 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+++|+|+|.|-=++.+|- +.+..+|+-+|....++.-++...+.+|++|++++++.++++..... . ||+|.+=+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~--~-~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKK--Q-YDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccc--c-CcEEEeeh
Confidence 68999999999999999884 45667799999999999999999999999999999999998875432 1 99997543
No 217
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.73 E-value=0.00013 Score=63.77 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=60.3
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+++|+|+|.|.=++.+|-.. +..+++-+|.+..++.-++.....+|++||+++++++++ . .. ..+||.|+.=+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~--~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EY--RESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TT--TT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-cc--CCCccEEEeeh
Confidence 89999999999898888775 668999999999999999999999999999999999988 1 11 26799998643
No 218
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.71 E-value=8.4e-05 Score=68.00 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~----~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
...+||=+|.|.|+.+..+.+. .+-.+|++||+|+..++.+++.+..... ++++++.+|+..+...... .+||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccE
Confidence 5789999999999988887765 2346899999999999999998876432 4699999999877654431 27999
Q ss_pred EEECCCC
Q 019692 213 ILLDPSC 219 (337)
Q Consensus 213 IlvDpPC 219 (337)
|++|.+-
T Consensus 154 Ii~D~~d 160 (246)
T PF01564_consen 154 IIVDLTD 160 (246)
T ss_dssp EEEESSS
T ss_pred EEEeCCC
Confidence 9999884
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.71 E-value=0.00096 Score=61.63 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v-~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..-+|||++||+|.--+-+...... ...|.-.|.++..++..++.++..|+.+| ++.++|+.+...........+.++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3458999999999877666555432 35899999999999999999999999885 999999887543221112457777
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+ +|.+--.+| .+ +. ...|......+. +|.|||+.=-+||.- +.|.++|
T Consensus 215 V------sGL~ElF~D-----------------n~---lv---~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~L 263 (311)
T PF12147_consen 215 V------SGLYELFPD-----------------ND---LV---RRSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVL 263 (311)
T ss_pred E------ecchhhCCc-----------------HH---HH---HHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHH
Confidence 5 444422222 01 11 123333444444 499999888888853 5677777
Q ss_pred c
Q 019692 294 P 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 264 t 264 (311)
T PF12147_consen 264 T 264 (311)
T ss_pred h
Confidence 3
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.69 E-value=0.00029 Score=62.65 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=80.8
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
|.|+||--|+....+.+. +...+++|+|+++.-++.++++++++|+.+ |++..+|........ +..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~---e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG---EDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG---G---EEEE----
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC---CCCCEEEE----
Confidence 689999999999999885 233479999999999999999999999765 999999976543221 23688876
Q ss_pred CCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcC
Q 019692 220 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMS 298 (337)
Q Consensus 220 Sg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~ 298 (337)
+|.|- .+-.+||++....++. ..+|. .|--+...+.++|. +
T Consensus 73 AGMGG------------------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~---~ 114 (205)
T PF04816_consen 73 AGMGG------------------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLY---E 114 (205)
T ss_dssp EEE-H------------------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHH---H
T ss_pred ecCCH------------------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHH---H
Confidence 34442 2346788888765543 56775 45558899999994 3
Q ss_pred CCcEEe
Q 019692 299 FGFQLA 304 (337)
Q Consensus 299 ~~~~~~ 304 (337)
.||.+.
T Consensus 115 ~gf~I~ 120 (205)
T PF04816_consen 115 NGFEII 120 (205)
T ss_dssp TTEEEE
T ss_pred CCCEEE
Confidence 467664
No 221
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.63 E-value=7.2e-05 Score=67.15 Aligned_cols=77 Identities=29% Similarity=0.423 Sum_probs=58.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNL 200 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~------------~g~~~v~~~~~D~~~~ 200 (337)
+...++.+||+.|||.|.-...||+. +..|+|+|+++.+++.+.+.... ....+|+++++|+.++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44677889999999999999999985 36999999999999988432211 1123589999999998
Q ss_pred CCCCCCCCCccEEE
Q 019692 201 DPKDPAYSEVRAIL 214 (337)
Q Consensus 201 ~~~~~~~~~fD~Il 214 (337)
.+.. .++||.|+
T Consensus 110 ~~~~--~g~fD~iy 121 (218)
T PF05724_consen 110 PPED--VGKFDLIY 121 (218)
T ss_dssp GGSC--HHSEEEEE
T ss_pred Chhh--cCCceEEE
Confidence 7654 35799998
No 222
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.55 E-value=0.00031 Score=65.69 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=60.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|..|||+|||+|-.+...+.. +..+|+|+|.++ |.+.++...+.+.+. .|+++.+..+++... ++.|+|+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEe
Confidence 4789999999999988776665 567999999874 778888888877664 599999988877533 57899998
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
.|=
T Consensus 250 EPM 252 (517)
T KOG1500|consen 250 EPM 252 (517)
T ss_pred ccc
Confidence 874
No 223
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.52 E-value=0.00063 Score=61.94 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
...++||+|||-|+.|..|+... .+|+|.|.|..|..+++ +.|.. ++..| +.... ..+||+|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~~---vl~~~--~w~~~---~~~fDvIs-- 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGFT---VLDID--DWQQT---DFKFDVIS-- 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCCe---EEehh--hhhcc---CCceEEEe--
Confidence 35689999999999999999987 56999999998866544 44653 33222 12212 24799996
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE------------c-CCCCc
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS------------T-CSIHQ 282 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs------------T-CS~~~ 282 (337)
|-. ++.|. .....+|+.+.+.+++ |.+|-+ + -+--|
T Consensus 157 --cLN--vLDRc--------------------------~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P 206 (265)
T PF05219_consen 157 --CLN--VLDRC--------------------------DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRP 206 (265)
T ss_pred --ehh--hhhcc--------------------------CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCc
Confidence 332 34331 1125678888777776 877655 1 12222
Q ss_pred ccC--------HHHHHHHhchhcCCCcEEec
Q 019692 283 VEN--------EDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 283 ~EN--------e~vv~~~l~~~~~~~~~~~~ 305 (337)
.|- |+.|..+.+--+..||++..
T Consensus 207 ~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 207 SELLPVKGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred hhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 221 66666666333466888864
No 224
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.51 E-value=0.00013 Score=63.05 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=50.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCC-CCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLD-PKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g---~~~v~~~~~D~~~~~-~~~~~~~~fD 211 (337)
..+.+||++|||+|-.++.++.+. +..+|++.|.++ .+..++.|++.++ -.+|.+...|..+.. .......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999998888888873 457999999999 9999999999887 245777777764421 1110124799
Q ss_pred EEEE
Q 019692 212 AILL 215 (337)
Q Consensus 212 ~Ilv 215 (337)
+|+.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9983
No 225
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=6.8e-05 Score=73.34 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=88.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCC-CCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDP-AYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~-~~~~fD~ 212 (337)
-.++-+|||.-|++|--++..|..+.+-+.|+|.|.+++.++..++|.+.+++.+ |+..+.|+..+-.... ....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3456799999999999999999999888899999999999999999999998866 7788888765532211 1257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
|=+||= |+- ...|+.|++.+..|.|++.|||
T Consensus 187 IDLDPy--Gs~----------------------------------s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 187 IDLDPY--GSP----------------------------------SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred EecCCC--CCc----------------------------------cHHHHHHHHHhhcCCEEEEEec
Confidence 999985 221 1468899888777899999998
No 226
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0003 Score=66.81 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=65.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
...|+|.-+|+|--++-+|.-.+.. +|+..|+|+++++.+++|++.+...+..+++.|+..+..... ..||+|=+||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~--~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELH--RAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcC--CCccEEecCC
Confidence 6799999999999999988876543 899999999999999999999955667778888877654432 6799999998
Q ss_pred C
Q 019692 218 S 218 (337)
Q Consensus 218 P 218 (337)
=
T Consensus 130 F 130 (380)
T COG1867 130 F 130 (380)
T ss_pred C
Confidence 5
No 227
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.45 E-value=0.00075 Score=63.09 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=80.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEeccCC-CCCC-CCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLHGDFL-NLDP-KDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~-v~~~~~D~~-~~~~-~~~~~~~fD~I 213 (337)
.-++||+|+|.-.+-..|+.... +-+++|.|+|+..++.|++|++++ ++.+ |+++...-. .+.. .....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45799999999988666665554 479999999999999999999999 8764 888765322 2211 11112579999
Q ss_pred EECCCCCCcccc------CcccCccC-------CCCCC-CCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 214 LLDPSCSGSGTA------AERLDHLL-------PSHAS-GHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 214 lvDpPCSg~G~~------~~~~d~~~-------~~~~~-~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
+|+||.-.+--- ++.-.... |.... +...+.+++- --..+=.++++....+.. .+..-||=
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~G---GEv~FV~rMI~ES~~~~~--~v~WfTsm 256 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEG---GEVAFVKRMIKESLQLKD--QVRWFTSM 256 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHH---THHHHHHHHHHHHHHHGG--GEEEEEEE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCC---ccHHHHHHHHHHHHHhCC--CcEEEeec
Confidence 999996544210 00000000 00000 0000000000 011233456666665532 44444677
Q ss_pred CCcccCHHHHHHHhchhcCCCcEE
Q 019692 280 IHQVENEDVIKSVLPIAMSFGFQL 303 (337)
Q Consensus 280 ~~~~ENe~vv~~~l~~~~~~~~~~ 303 (337)
+...+|=.-+...|+...-..+..
T Consensus 257 vgKkssL~~l~~~L~~~~~~~~~~ 280 (299)
T PF05971_consen 257 VGKKSSLKPLKKELKKLGATNYKV 280 (299)
T ss_dssp ESSGGGHHHHHHHHHHTT-SEEEE
T ss_pred ccCcccHHHHHHHHHhcCCceEEE
Confidence 899999888888886533333433
No 228
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00024 Score=61.74 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=57.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|.+|||+|+|+|--+...+. .+...|++.|+++.....++-|++.+|+. |.++..|... . ...||+|++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv~-i~~~~~d~~g-~-----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGVS-ILFTHADLIG-S-----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccce-eEEeeccccC-C-----CcceeEEEe
Confidence 488999999999977665544 35679999999999999999999999964 8888888765 2 146899986
No 229
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.42 E-value=1.5e-05 Score=62.92 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=26.1
Q ss_pred EeecCCchhHHHHHHHHcCCCC--EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 142 LDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 142 LDl~aG~G~kt~~la~~~~~~g--~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|++|+..|..|..+++.+.+.+ +++++|..+. .+..++.+++.++. +++++.+|+.+..+... ..+||.|++|.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 6899999999999998876654 7999999986 44455555556654 59999999866533221 257999999987
Q ss_pred C
Q 019692 219 C 219 (337)
Q Consensus 219 C 219 (337)
-
T Consensus 79 H 79 (106)
T PF13578_consen 79 H 79 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 230
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.38 E-value=0.00051 Score=57.03 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=70.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCC
Q 019692 164 KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 242 (337)
Q Consensus 164 ~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~ 242 (337)
+|+|+|+.+++++..+++++..++. +|++++.+..++....+. +++|+++.+ +|-+.. .|..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-~~v~~~iFN-----LGYLPg-gDk~---------- 63 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-GPVDAAIFN-----LGYLPG-GDKS---------- 63 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S---EEEEEEE-----ESB-CT-S-TT----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-CCcCEEEEE-----CCcCCC-CCCC----------
Confidence 6999999999999999999999885 599999998888765432 478888765 565532 2221
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCC-Cc--ccCHHHHHHHhchhcCCCcEEe
Q 019692 243 DPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI-HQ--VENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 243 ~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~-~~--~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
+-..++.-...|+.|++++++|.++-.+|.. |+ .|..+.|..+++.-....|.+.
T Consensus 64 -------i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 64 -------ITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp -------SB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred -------CCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 2233445577899999988874444444444 66 2334455555543334456664
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.34 E-value=0.00069 Score=56.47 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=51.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeccCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSG--A-ANIEVLHGDFL 198 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V~avD~~~~~l~~l~~~~~~~g--~-~~v~~~~~D~~ 198 (337)
.+...|+|+|||-|+.+..++.++ ...-+|+++|.++..++.+.+..++.+ . .++.+..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 678899999999999999999944 245799999999999999999999887 3 34555555443
No 232
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00055 Score=63.69 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=69.0
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~ 205 (337)
+....+++ .+||-+|-|.|+.+-.+.+.. +-.+++.||+++..++.+++.+.... -++++++..|..++....+
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 33445566 699999999999999888874 34799999999999999999987654 3569999999988876553
Q ss_pred CCCCccEEEECCC
Q 019692 206 AYSEVRAILLDPS 218 (337)
Q Consensus 206 ~~~~fD~IlvDpP 218 (337)
.+||+|++|--
T Consensus 148 --~~fDvIi~D~t 158 (282)
T COG0421 148 --EKFDVIIVDST 158 (282)
T ss_pred --CcCCEEEEcCC
Confidence 47999999954
No 233
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.30 E-value=0.00094 Score=63.67 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-------C---CcEEEEeccCCCCC--CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------A---ANIEVLHGDFLNLD--PKD 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-------~---~~v~~~~~D~~~~~--~~~ 204 (337)
++.+|||+|||-||-..-.... +-..++|+|++...++.++++.+.+. . -...++.+|..... ...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999976655543 45799999999999999999984432 1 12566777765321 111
Q ss_pred -CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcc
Q 019692 205 -PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 283 (337)
Q Consensus 205 -~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ 283 (337)
+....||+|=|=-- + |. ...+.+.. +.+|.++.+.|++|.++..||-
T Consensus 140 ~~~~~~FDvVScQFa------l----------HY-----~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~~---- 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------L----------HY-----AFESEEKA-------RQFLKNVSSLLKPGGYFIGTTP---- 187 (331)
T ss_dssp SSTTS-EEEEEEES-------G----------GG-----GGSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE----
T ss_pred cccCCCcceeehHHH------H----------HH-----hcCCHHHH-------HHHHHHHHHhcCCCCEEEEEec----
Confidence 11247888854211 1 11 01133332 5689999999998655555554
Q ss_pred cCHHHHHHHh
Q 019692 284 ENEDVIKSVL 293 (337)
Q Consensus 284 ENe~vv~~~l 293 (337)
|-+.|-+-|
T Consensus 188 -d~~~i~~~l 196 (331)
T PF03291_consen 188 -DSDEIVKRL 196 (331)
T ss_dssp --HHHHHCCH
T ss_pred -CHHHHHHHH
Confidence 555553333
No 234
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.09 E-value=0.00059 Score=61.24 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=50.9
Q ss_pred HHHHHhCCCCCC-eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019692 128 MVAAALAPKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 128 l~~~~l~~~~g~-~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 205 (337)
+.-.+....++. .++|+|||+|--+..+|... .+|+|+|+++.|++.+++.-...-.. ..+....+...+...
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-- 97 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-- 97 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--
Confidence 444444555665 89999999996666677774 57999999999999877653211110 122222233333221
Q ss_pred CCCCccEEEE
Q 019692 206 AYSEVRAILL 215 (337)
Q Consensus 206 ~~~~fD~Ilv 215 (337)
.+++|.|++
T Consensus 98 -e~SVDlI~~ 106 (261)
T KOG3010|consen 98 -EESVDLITA 106 (261)
T ss_pred -Ccceeeehh
Confidence 267888874
No 235
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.03 E-value=0.0005 Score=64.75 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=57.7
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC-CccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~-~fD~IlvDpP 218 (337)
+|+|++||.|+.+..+... +-..|.|+|+++.+.+..+.|.. ....+|..++.... .. .+|+++.-||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~--l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD--LPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH--HHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------cccccccccccccc--ccccceEEEeccC
Confidence 6899999999999888775 22378999999999999999875 67788888776442 22 5999999999
Q ss_pred CCCccccCc
Q 019692 219 CSGSGTAAE 227 (337)
Q Consensus 219 CSg~G~~~~ 227 (337)
|.+.....+
T Consensus 71 CQ~fS~ag~ 79 (335)
T PF00145_consen 71 CQGFSIAGK 79 (335)
T ss_dssp -TTTSTTST
T ss_pred CceEecccc
Confidence 999887754
No 236
>PHA01634 hypothetical protein
Probab=97.02 E-value=0.0037 Score=50.75 Aligned_cols=76 Identities=14% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|+|+|++.|..++.++- .+..+|+++|.++...+..+++++.+.+-.=-+...+ .+. .+++||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~e---W~~---~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGE---WNG---EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhheeeeceeeccc---ccc---cCCCcceEEEE
Confidence 388999999999999988865 4678999999999999999999987754221112222 221 36789999998
Q ss_pred CCCCCc
Q 019692 217 PSCSGS 222 (337)
Q Consensus 217 pPCSg~ 222 (337)
|-|.
T Consensus 100 --CeGC 103 (156)
T PHA01634 100 --CEGC 103 (156)
T ss_pred --ccch
Confidence 6664
No 237
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0011 Score=59.65 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
.+..+||+||-.|..|++||+.++. ..|+|+|||+..++.|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence 4678999999999999999999854 68999999999999999998754
No 238
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.95 E-value=0.007 Score=54.87 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=75.3
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
....+..+..+|+|+|.|.|..+..+++.. +.-+++..|. +..++.+++ .++|+++.+|+.+.. + .
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~---P--~- 158 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPL---P--V- 158 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCC---S--S-
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHhhh---c--c-
Confidence 444566677899999999999999999885 5679999998 777877777 467999999997321 1 2
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC---cEEEEEcCCCCcccCH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV---ERVVYSTCSIHQVENE 286 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~---G~lvYsTCS~~~~ENe 286 (337)
+|+|++ ..++.. |+.++ -..||+++...+++ |+|+-...-+.....+
T Consensus 159 ~D~~~l------~~vLh~-----------------~~d~~-------~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~ 208 (241)
T PF00891_consen 159 ADVYLL------RHVLHD-----------------WSDED-------CVKILRNAAAALKPGKDGRLLIIEMVLPDDRTG 208 (241)
T ss_dssp ESEEEE------ESSGGG-----------------S-HHH-------HHHHHHHHHHHSEECTTEEEEEEEEEECSSSSS
T ss_pred ccceee------ehhhhh-----------------cchHH-------HHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCC
Confidence 899986 112221 23333 26789998886663 5666655544444333
No 239
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.82 E-value=0.0047 Score=52.56 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=55.0
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCC
Q 019692 166 VACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 242 (337)
Q Consensus 166 ~avD~~~~~l~~l~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~ 242 (337)
+|+|+|+.|++.++++.+..+ ..+|+++++|+.+++..+ ++||.|++ +.+ ++.-+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~-----~~~-l~~~~d------------ 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTM-----GYG-LRNVVD------------ 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEe-----cch-hhcCCC------------
Confidence 489999999999987765432 356999999999987543 57999985 222 211111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 243 DPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 243 ~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
..+.|++..+.+++ |.++....+
T Consensus 60 --------------~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 --------------RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred --------------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 24778888888887 677655444
No 240
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.81 E-value=0.0015 Score=61.88 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=59.3
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCC
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
|+|++||.|+.+..+... +-..+.++|+++.+++..+.|.. + .++.+|..++.... ...+|+++.-|||.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--CCCcCEEEecCCCc
Confidence 689999999999888664 22356789999999999888853 2 34567877776433 34689999999999
Q ss_pred CccccCcc
Q 019692 221 GSGTAAER 228 (337)
Q Consensus 221 g~G~~~~~ 228 (337)
+.....++
T Consensus 71 ~fS~ag~~ 78 (315)
T TIGR00675 71 PFSIAGKR 78 (315)
T ss_pred ccchhccc
Confidence 88766543
No 241
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0028 Score=56.99 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.5
Q ss_pred eEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
+||++|||.|.....+.+--.+ +-+|+|+|.++++++..+++....- +++.....|+..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc
Confidence 8999999999999888776432 2689999999999999998876543 445555556544
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.74 E-value=0.018 Score=54.86 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH--HHhC---C--CcEEEEeccCCCCCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI--KLSG---A--ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~--~~~g---~--~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+.-++||-+|.|-|--.-.+.+. .+-++|+-+|.|++|++.++++. ...+ . .+|++++.|+.++..... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--D 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--c
Confidence 45679999999999766666664 33579999999999999999544 3322 2 359999999988765442 5
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
+||.|++|-|-
T Consensus 365 ~fD~vIVDl~D 375 (508)
T COG4262 365 MFDVVIVDLPD 375 (508)
T ss_pred cccEEEEeCCC
Confidence 89999999883
No 243
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.0039 Score=55.60 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=73.7
Q ss_pred CeEEeecCCchhHHHHHHHHcCC----CC----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----C
Q 019692 139 WKVLDACSAPGNKTVHLAALMKG----KG----KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----P 205 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~----~g----~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~ 205 (337)
.+|+|+||+||+++..+++.+.. .+ +|+|||+.+-. .+..|..+++|.+...... -
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999987743 22 49999997532 3567889999988754210 1
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC----CCCC-cEEEEEcCCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS----FPGV-ERVVYSTCSI 280 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~----~~~~-G~lvYsTCS~ 280 (337)
...+.|.|++|-.---+|+ .++.++ .|.++|..|+. .+++ |..| --+
T Consensus 112 ggekAdlVvcDGAPDvTGl-----------------------Hd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FV---aKi 163 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-----------------------HDLDEY--VQAQLLLAALNIATCVLKPGGSFV---AKI 163 (294)
T ss_pred CCCCccEEEeCCCCCcccc-----------------------ccHHHH--HHHHHHHHHHHHHhheecCCCeee---hhh
Confidence 1247899999954333443 122333 46677777765 3565 6666 356
Q ss_pred CcccCHHHHH
Q 019692 281 HQVENEDVIK 290 (337)
Q Consensus 281 ~~~ENe~vv~ 290 (337)
+..++...+-
T Consensus 164 fRg~~tslLy 173 (294)
T KOG1099|consen 164 FRGRDTSLLY 173 (294)
T ss_pred hccCchHHHH
Confidence 6666655443
No 244
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.68 E-value=0.0036 Score=57.33 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=64.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.|..|+=+| --..|...+.+.+-..+|..+|++++.++-..+-++.+|++||+.+..|.++..+.+. ..+||+++-|
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeecC
Confidence 466788787 3344444444444457899999999999999999999999999999999998876653 3689999999
Q ss_pred CCCC
Q 019692 217 PSCS 220 (337)
Q Consensus 217 pPCS 220 (337)
||-+
T Consensus 229 PpeT 232 (354)
T COG1568 229 PPET 232 (354)
T ss_pred chhh
Confidence 9965
No 245
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.65 E-value=0.006 Score=53.97 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=43.2
Q ss_pred chhhHHHHHHhCCCC---CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHH
Q 019692 123 GKASSMVAAALAPKP---GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 123 d~ss~l~~~~l~~~~---g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~ 183 (337)
..+|-+....+...+ +-+++|-|||.|+..+.++-+-++. ..|+|.|+|+++++.+++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 345666666655443 3489999999999988777664332 479999999999998888765
No 246
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.58 E-value=0.0015 Score=58.27 Aligned_cols=127 Identities=10% Similarity=0.136 Sum_probs=78.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+..+=.++||+|||||-.+-.+-.+. .+++++|+|.+|++.+.++ |+- =+..++|+..+.... ...+||.|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~Y-D~L~~Aea~~Fl~~~-~~er~DLi 192 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLY-DTLYVAEAVLFLEDL-TQERFDLI 192 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cch-HHHHHHHHHHHhhhc-cCCcccch
Confidence 33445799999999999888887764 6799999999999987764 211 123344444333211 13568887
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc--------
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE-------- 284 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E-------- 284 (337)
..----+-.|. -..++--+..++++ |.+.||.-+.--+-
T Consensus 193 ~AaDVl~YlG~--------------------------------Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~ 240 (287)
T COG4976 193 VAADVLPYLGA--------------------------------LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ 240 (287)
T ss_pred hhhhHHHhhcc--------------------------------hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh
Confidence 53211111221 13556666677776 89999977755442
Q ss_pred ----CHHHHHHHhchhcCCCcEEe
Q 019692 285 ----NEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 285 ----Ne~vv~~~l~~~~~~~~~~~ 304 (337)
.+..|...|+ ..||+++
T Consensus 241 RyAH~~~YVr~~l~---~~Gl~~i 261 (287)
T COG4976 241 RYAHSESYVRALLA---ASGLEVI 261 (287)
T ss_pred hhccchHHHHHHHH---hcCceEE
Confidence 3445555553 4566665
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.57 E-value=0.051 Score=48.40 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=88.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+.++.|+||--|+....+-.. +....+++.|+++..++.+.+++++++.. .+++..+|........ ..+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~---d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE---DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc---CCcCEEE
Confidence 45777999999999999888775 44568999999999999999999999875 4889999985543322 3688887
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+ .|.|-. +=.+||+.....++. -++| +.|--|+.....+|
T Consensus 91 I----AGMGG~------------------------------lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L 131 (226)
T COG2384 91 I----AGMGGT------------------------------LIREILEEGKEKLKGVERLI-----LQPNIHTYELREWL 131 (226)
T ss_pred E----eCCcHH------------------------------HHHHHHHHhhhhhcCcceEE-----ECCCCCHHHHHHHH
Confidence 6 344421 115788888887664 5777 47778899999988
Q ss_pred c
Q 019692 294 P 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 132 ~ 132 (226)
T COG2384 132 S 132 (226)
T ss_pred H
Confidence 4
No 248
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.55 E-value=0.014 Score=58.91 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=74.1
Q ss_pred hcCeEEEechhhHHHHHHhCCC--CCCeEEeecCCchhHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHhCCC-
Q 019692 115 VNGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAA- 188 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~--~g~~VLDl~aG~G~kt~~la~~~~---~~g~V~avD~~~~~l~~l~~~~~~~g~~- 188 (337)
..|.++....-..+++..+.+. |+..|.|+|||+|+........+. ....+++.+....+...++.|+.-.|+.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 4577777777777778887765 678999999999998765444332 1246899999999999999998776653
Q ss_pred -cEEEEeccCCCCCCCCCCCCCccEEEECCCCCC
Q 019692 189 -NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 189 -~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg 221 (337)
......+|...-+... ...+||.|+.+||.+.
T Consensus 273 ~t~~~~~~dtl~~~d~~-~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 273 ANFNIINADTLTTKEWE-NENGFEVVVSNPPYSI 305 (501)
T ss_pred cccCcccCCcCCCcccc-ccccCCEEeecCCccc
Confidence 2334445533321111 1246999999999875
No 249
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.0082 Score=54.00 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=54.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~-~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|..+||+|+.|||+|-.+.+. +..+|+|+|.....+. .++. ...-+.....|++.+.+.+- .+..|.|++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~ 150 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDF-TEKPDLIVI 150 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHc-ccCCCeEEE
Confidence 5889999999999999988775 5679999999865443 1221 12224455567777765543 236899999
Q ss_pred CCCCCC
Q 019692 216 DPSCSG 221 (337)
Q Consensus 216 DpPCSg 221 (337)
|...-+
T Consensus 151 DvSFIS 156 (245)
T COG1189 151 DVSFIS 156 (245)
T ss_pred Eeehhh
Confidence 988443
No 250
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.53 E-value=0.0074 Score=57.24 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCcE--EEEeccCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANI--EVLHGDFLNL 200 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~---~g~V~avD~~~~~l~~l~~~~~~~g~~~v--~~~~~D~~~~ 200 (337)
.++..++|+|||.|.|+..+.+.+.. ....+++|+|.+.++.+.+++.....+.| ..+++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 46779999999999999988877642 24689999999999999999984445554 4588888664
No 251
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.50 E-value=0.0014 Score=60.60 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=66.5
Q ss_pred hhcCeEEEechhhHHHH--------HHhCC-CCCCeEEeecCCchhHHH-HHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 114 IVNGCVFLQGKASSMVA--------AALAP-KPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 114 ~~~G~~~~Qd~ss~l~~--------~~l~~-~~g~~VLDl~aG~G~kt~-~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
..+|-.+.=|+.-++.. ..+.. -.|+.|.||+||-|++|+ .+-.. +...|+|+|.++..++.++++++
T Consensus 162 v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 162 VQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred hhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHH
Confidence 35666666665544432 12221 237999999999999998 44332 45799999999999999999999
Q ss_pred HhCCCc-EEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 184 LSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 184 ~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+++.. ..++.+|-+...+. ...|.|.+
T Consensus 240 ~N~V~~r~~i~~gd~R~~~~~----~~AdrVnL 268 (351)
T KOG1227|consen 240 ANNVMDRCRITEGDNRNPKPR----LRADRVNL 268 (351)
T ss_pred hcchHHHHHhhhccccccCcc----ccchheee
Confidence 987643 45566776655433 35677765
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.44 E-value=0.01 Score=52.02 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeccCCCCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------AANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-------~~~v~~~~~D~~~~~~~~ 204 (337)
..-.+.|+|||.||....++.+. +...|++.||-....+..++++..++ ..|+.+...++..+.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~ 133 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF 133 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence 34578999999999999999985 56789999999988888888888776 678888888877766553
No 253
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=96.43 E-value=0.0025 Score=64.08 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~~~~ 209 (337)
++++..|||+||+||++....++.++.++.|+|+|+-+-. -+.|+..++.|++.-.-. ....-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999999888899999997633 234555555554321100 000124
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
.|+||.|.--+
T Consensus 111 advVLhDgapn 121 (780)
T KOG1098|consen 111 ADVVLHDGAPN 121 (780)
T ss_pred CcEEeecCCCc
Confidence 69999996433
No 254
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.40 E-value=0.018 Score=50.86 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCCCCC-----CCCCcc
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLDPKDP-----AYSEVR 211 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v-~~~~~D~~~~~~~~~-----~~~~fD 211 (337)
+.+||+++||+|-++.++|+.+. .-.-.-.|.++..+...+..+...|..|+ ..+..|+........ ....||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 44699999999999999999984 35677889999999999999998888874 355666665432211 134789
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-c-EEEEEcCCCCc---ccCH
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-E-RVVYSTCSIHQ---VENE 286 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G-~lvYsTCS~~~---~ENe 286 (337)
.|++ ..+ + + +...+. -..++..|.++|++ | .++|---...- -|..
T Consensus 105 ~i~~----~N~--l-----H------------------I~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN 154 (204)
T PF06080_consen 105 AIFC----INM--L-----H------------------ISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESN 154 (204)
T ss_pred eeee----hhH--H-----H------------------hcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHH
Confidence 9983 221 1 1 111111 25677788887776 5 57777655432 2333
Q ss_pred HHHHHHhc
Q 019692 287 DVIKSVLP 294 (337)
Q Consensus 287 ~vv~~~l~ 294 (337)
...+.-|+
T Consensus 155 ~~FD~sLr 162 (204)
T PF06080_consen 155 AAFDASLR 162 (204)
T ss_pred HHHHHHHh
Confidence 34445553
No 255
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.38 E-value=0.029 Score=52.64 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=80.3
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~----~v~~~~~D~~~ 199 (337)
|+|+-..+ ++++.++|+|||-||-.+-.-.. +-+.++++||.+--++.++++.+.+-- . .+.++.+|-..
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 55655554 57999999999999987765543 347899999999999999887765421 1 25677776543
Q ss_pred CCCCC---CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 019692 200 LDPKD---PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 276 (337)
Q Consensus 200 ~~~~~---~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYs 276 (337)
....+ ....+||+|=|-=- + |. ...|.+. -+.+|+++.+.|+||.+...
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~------~----------HY-----aFetee~-------ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFA------F----------HY-----AFETEES-------ARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeee------E----------ee-----eeccHHH-------HHHHHHHHHhhcCCCcEEEE
Confidence 21100 00122666633211 1 11 1112222 24678899999988655554
Q ss_pred cCCCCcccCHHHHHHHhc
Q 019692 277 TCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l~ 294 (337)
|-- |-++|-+=|.
T Consensus 236 TiP-----dsd~Ii~rlr 248 (389)
T KOG1975|consen 236 TIP-----DSDVIIKRLR 248 (389)
T ss_pred ecC-----cHHHHHHHHH
Confidence 433 6677766664
No 256
>PRK00536 speE spermidine synthase; Provisional
Probab=96.33 E-value=0.056 Score=49.85 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=53.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+||=+|.|-|+..-.+.+. + .+|+-||+|+..++.+++.+... +. ++++++.. +.... .++||+|
T Consensus 73 pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~--~~~fDVI 143 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLD--IKKYDLI 143 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhcc--CCcCCEE
Confidence 579999999999999888876 2 49999999999999999966543 23 34777651 11111 2579999
Q ss_pred EECC
Q 019692 214 LLDP 217 (337)
Q Consensus 214 lvDp 217 (337)
++|-
T Consensus 144 IvDs 147 (262)
T PRK00536 144 ICLQ 147 (262)
T ss_pred EEcC
Confidence 9993
No 257
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.0078 Score=57.41 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=62.6
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-+++|++||.||..+.+... +-.-+.++|+++.+++..+.|... ..++..|...+....-....+|+|+--||
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 47999999999999877765 234689999999999999988653 34566676665543211117899999999
Q ss_pred CCCccccCcc
Q 019692 219 CSGSGTAAER 228 (337)
Q Consensus 219 CSg~G~~~~~ 228 (337)
|-+..+..++
T Consensus 77 CQ~FS~aG~r 86 (328)
T COG0270 77 CQDFSIAGKR 86 (328)
T ss_pred CcchhhcCcc
Confidence 9998877655
No 258
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=96.24 E-value=0.0023 Score=56.54 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----D 204 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~----~ 204 (337)
+...+.+.+|...+||.-|.||.|..+.+.- ...+++|.|.+|-+-+.++...+.+=-..+..+.+.|..++.- .
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 4567889999999999999999999988874 4578999999999888887776433112233344444433210 0
Q ss_pred CCCCCccEEEECCCCCCc
Q 019692 205 PAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~ 222 (337)
-....||.|+.|--||+.
T Consensus 114 l~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSM 131 (303)
T ss_pred CCcCCcceEEeecCcccc
Confidence 012579999999999975
No 259
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.16 E-value=0.02 Score=57.14 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 204 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------------- 204 (337)
.-+++|++||.||.+..+-.. +-..|.++|+++.+.+..+.|... ..+...+++|..++....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999888654 224678999999999988887421 122344556666554210
Q ss_pred -CCCCCccEEEECCCCCCccccC
Q 019692 205 -PAYSEVRAILLDPSCSGSGTAA 226 (337)
Q Consensus 205 -~~~~~fD~IlvDpPCSg~G~~~ 226 (337)
.....+|+++.-|||-+..+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0123689999999999876654
No 260
>PRK11524 putative methyltransferase; Provisional
Probab=96.01 E-value=0.014 Score=54.55 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=37.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
.+|+.|||.++|+|..+. +|..+ +.+.+|+|++++.++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999995443 34443 46899999999999999999864
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.94 E-value=0.0036 Score=60.46 Aligned_cols=64 Identities=30% Similarity=0.336 Sum_probs=56.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLD 201 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~--~v~~~~~D~~~~~ 201 (337)
.++|+.|-|+|||.|-.++.++.. ..+|+|+|.++++++.++.|++.+.+. +|++++.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999998888775 389999999999999999999988774 4999999987765
No 262
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.91 E-value=0.025 Score=52.60 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=39.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
..+|||+|||||.-+..+.+.++....++++|.|+.+++.++..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 468999999999877767777665568999999999999888877654
No 263
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.91 E-value=0.056 Score=50.83 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=67.6
Q ss_pred CCCchhhhcCeEEEechhh-HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC
Q 019692 108 LHVHPLIVNGCVFLQGKAS-SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186 (337)
Q Consensus 108 ~~~~~~~~~G~~~~Qd~ss-~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g 186 (337)
+++.-.+.+|.+ +|..|- .-+.....+++|.+||=+||||=|....++...-+..+|+.+|+++.|++.+++ +|
T Consensus 140 LPd~vs~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~G 214 (354)
T KOG0024|consen 140 LPDNVSFEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FG 214 (354)
T ss_pred CCCCCchhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hC
Confidence 444455666644 444442 333455678999999999999977655444443467899999999999998876 68
Q ss_pred CCcEEEEeccCCCCC------CCCCCCCCccEEEECCCCCCccc
Q 019692 187 AANIEVLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGT 224 (337)
Q Consensus 187 ~~~v~~~~~D~~~~~------~~~~~~~~fD~IlvDpPCSg~G~ 224 (337)
...+....... ... ........+|+.| -|||..+
T Consensus 215 a~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~~~---dCsG~~~ 254 (354)
T KOG0024|consen 215 ATVTDPSSHKS-SPQELAELVEKALGKKQPDVTF---DCSGAEV 254 (354)
T ss_pred CeEEeeccccc-cHHHHHHHHHhhccccCCCeEE---EccCchH
Confidence 76544433322 111 0000113488887 3998753
No 264
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.85 E-value=0.036 Score=51.44 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=47.1
Q ss_pred CeEEeecCCchhHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHHHHH-HhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 139 WKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIK-LSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~-la~~~~~~g~V~avD~~~~~l~~l~~~~~-~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+|+=+||||=-.|.. +++....+..|+++|+|+.+.+.+++-++ ..|+. .+.++.+|..+.... ...||+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEEEE
Confidence 4999999998776654 55544445689999999999999999887 55654 499999998876533 357999998
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
-+-
T Consensus 199 Aal 201 (276)
T PF03059_consen 199 AAL 201 (276)
T ss_dssp -TT
T ss_pred hhh
Confidence 654
No 265
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.76 E-value=0.051 Score=50.80 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=65.4
Q ss_pred CeEEeecCCchhHHHH----HHHHcC---CCCEEEEEeCCHHHHHHHHHHH--------------HHh---------C--
Q 019692 139 WKVLDACSAPGNKTVH----LAALMK---GKGKIVACELNKERVRRLKDTI--------------KLS---------G-- 186 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~----la~~~~---~~g~V~avD~~~~~l~~l~~~~--------------~~~---------g-- 186 (337)
-+|+.+||++|-=... +.+..+ ...+|+|.|+|..+++.|++.. +++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 5999999999974333 333322 1357999999999999988752 000 1
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 187 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 187 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
+ +.|++...|..+.+... .+.||+|+| -.. +- +. -.+.|.++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~c----RNv--li-----------------yF-------~~~~~~~v 244 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFC----RNV--MI-----------------YF-------DKTTQERI 244 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCcc--CCCcceeeH----hhH--Hh-----------------cC-------CHHHHHHH
Confidence 1 23777777776532211 257999984 221 10 00 12347888
Q ss_pred HHHHhCCCCC-cEEEE
Q 019692 261 LRHALSFPGV-ERVVY 275 (337)
Q Consensus 261 L~~A~~~~~~-G~lvY 275 (337)
++.....+++ |.|+.
T Consensus 245 l~~l~~~L~pgG~L~l 260 (287)
T PRK10611 245 LRRFVPLLKPDGLLFA 260 (287)
T ss_pred HHHHHHHhCCCcEEEE
Confidence 9998888887 66554
No 266
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.72 E-value=0.13 Score=45.76 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=78.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..|.+||.+|-|-|-..+.+.+. +-.+-+-+|.++..++++++..-+- -.||.++.+-.++..+..+ .+.||.|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~-d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLP-DKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcccc-ccCcceeEe
Confidence 57999999999999988877765 3356677899999999988876443 2578888887776655543 356999998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
|.= .. .-+++ +..-+++.+++|| |.+.| |-..-.-|
T Consensus 176 DTy-------~e------------------~yEdl-------~~~hqh~~rLLkP~gv~Sy--fNg~~~~~ 212 (271)
T KOG1709|consen 176 DTY-------SE------------------LYEDL-------RHFHQHVVRLLKPEGVFSY--FNGLGADN 212 (271)
T ss_pred ech-------hh------------------HHHHH-------HHHHHHHhhhcCCCceEEE--ecCcccch
Confidence 842 00 12233 3334489999998 65555 65555544
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.69 E-value=0.02 Score=50.63 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
-.+|+.|||.+||+|..+. +|..+ +.+.+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3679999999999996443 34443 3679999999999988764
No 268
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.58 E-value=0.03 Score=49.90 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=49.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
-.+.||+|||-|..|-.+..-+ -.+|..+|..+..++.+++.+...+-...++.+.-.+++.+.. .+||+|.+-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~---~~YDlIW~Q 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE---GKYDLIWIQ 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T---T-EEEEEEE
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC---CcEeEEEeh
Confidence 5689999999999998763322 3689999999999999998765422233677777777776552 589999873
No 269
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.42 E-value=0.39 Score=37.96 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=45.2
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCCCCCCCccEE
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKDPAYSEVRAI 213 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~--~~~~~~~~~~fD~I 213 (337)
++|+|||+|..+ .++........++++|.++.++...+......+...+.+...|... .+.... ..||.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDS--ASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCC--CceeEE
Confidence 999999999877 4555432223899999999999985555433222226777777665 332210 257777
No 270
>PRK13699 putative methylase; Provisional
Probab=95.42 E-value=0.037 Score=49.99 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
..+|+.|||.+||+|....+. ..+ +.+.+++|+++.-.+.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa-~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAA-LQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHH-HHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999654433 333 357999999999999999988764
No 271
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.36 E-value=0.51 Score=40.44 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=88.6
Q ss_pred cCCchhHHHHHHHHcCCCCEEEEEeCC--HHHHH---HHHHHHHHhCCCcEE-EEeccCCCCCCCC-CCCCCccEEEECC
Q 019692 145 CSAPGNKTVHLAALMKGKGKIVACELN--KERVR---RLKDTIKLSGAANIE-VLHGDFLNLDPKD-PAYSEVRAILLDP 217 (337)
Q Consensus 145 ~aG~G~kt~~la~~~~~~g~V~avD~~--~~~l~---~l~~~~~~~g~~~v~-~~~~D~~~~~~~~-~~~~~fD~IlvDp 217 (337)
|=|--+++..++...+....|+|.-.+ ....+ .+..|++.+.-.++. ....|++.+.... .....||+|+-+=
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 334444566777776544567665543 33333 244666665333333 3456888887554 1236799999999
Q ss_pred CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchh
Q 019692 218 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIA 296 (337)
Q Consensus 218 PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~ 296 (337)
|+.|.|.- .....+....++=...+..|..++++ |.|.-+-|.-.|- +.-.|... +
T Consensus 84 PH~G~~~~-------------------~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~l---A 140 (166)
T PF10354_consen 84 PHVGGGSE-------------------DGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEEL---A 140 (166)
T ss_pred CCCCCCcc-------------------chhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHH---H
Confidence 99984421 13556667777778889999998886 8888888887775 55566544 3
Q ss_pred cCCCcEEec
Q 019692 297 MSFGFQLAT 305 (337)
Q Consensus 297 ~~~~~~~~~ 305 (337)
.+.|+.+..
T Consensus 141 ~~~gl~l~~ 149 (166)
T PF10354_consen 141 AEAGLVLVR 149 (166)
T ss_pred HhcCCEEEE
Confidence 466777764
No 272
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.27 E-value=0.082 Score=46.95 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=63.9
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchh--HHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGN--KTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 197 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~--kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~ 197 (337)
|..++-++..+..-..-..+++.+|+-|. .|+.||... +.+|++++|-.++..+...++.+..+|..+ ++|+.++.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 44444555544443445688999766443 455554443 345899999999999999999999888866 68888874
Q ss_pred -CCCCCCCCCCCCccEEEECC
Q 019692 198 -LNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 198 -~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+.+. +..+|++++|-
T Consensus 106 ~e~~~~~---~~~iDF~vVDc 123 (218)
T PF07279_consen 106 PEEVMPG---LKGIDFVVVDC 123 (218)
T ss_pred HHHHHhh---ccCCCEEEEeC
Confidence 334332 46799999993
No 273
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.14 E-value=0.089 Score=46.65 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++..|-|+|||-+..+ +.+.+.-+|+..|+... |=.++.+|..+.|..+ +.+|+++
T Consensus 70 ~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~---~svDv~V 127 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLED---ESVDVAV 127 (219)
T ss_dssp S-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S--T---T-EEEEE
T ss_pred cCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcCCC---CceeEEE
Confidence 334579999999999655 34444468999998642 1135668988888665 6799998
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE-cCCCCcccCHHHHHHH
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS-TCSIHQVENEDVIKSV 292 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs-TCS~~~~ENe~vv~~~ 292 (337)
.--.=. |+ + -...|..|.+.|++ |.|... .+| .-+|. +.|
T Consensus 128 fcLSLM--GT----------------n---------------~~~fi~EA~RvLK~~G~L~IAEV~S--Rf~~~---~~F 169 (219)
T PF05148_consen 128 FCLSLM--GT----------------N---------------WPDFIREANRVLKPGGILKIAEVKS--RFENV---KQF 169 (219)
T ss_dssp EES-----SS--------------------------------HHHHHHHHHHHEEEEEEEEEEEEGG--G-S-H---HHH
T ss_pred EEhhhh--CC----------------C---------------cHHHHHHHHheeccCcEEEEEEecc--cCcCH---HHH
Confidence 732211 11 1 14789999998887 544333 333 33343 444
Q ss_pred hchhcCCCcEEec
Q 019692 293 LPIAMSFGFQLAT 305 (337)
Q Consensus 293 l~~~~~~~~~~~~ 305 (337)
++.-...||++..
T Consensus 170 ~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 170 IKALKKLGFKLKS 182 (219)
T ss_dssp HHHHHCTTEEEEE
T ss_pred HHHHHHCCCeEEe
Confidence 4433567888753
No 274
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.01 E-value=0.085 Score=48.02 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+.++|+|+|||-=-.++..-.. .++..++|+|+|...++.+..-+..+|.. ..+...|...-++. ...|+.|+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~~~----~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDPPK----EPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSHTT----SEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccCCC----CCcchhhH
Confidence 44789999999999887765443 23469999999999999999999999865 66666676654332 34677774
No 275
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.76 E-value=0.065 Score=52.22 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=48.5
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 199 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~ 199 (337)
.|||+|+|+|-.+.+.+... ...|+|+|.-..|.+.+++.+.++|.. +|.+++...++
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 58999999999888776653 467999999999999999999999984 58887765444
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.68 E-value=0.19 Score=47.94 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=51.5
Q ss_pred hCCCCCCeEEeecCC-chhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG-~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
..++||++|+=.|+| .|..+.++|+.++ .+|+++|++++.++.+++ +|.+.+.... |....... .+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~i~~~-~~~~~~~~---~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHVINSS-DSDALEAV---KEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEEEEcC-CchhhHHh---HhhCc
Confidence 457899999988887 4457888888774 899999999999887664 5655322212 22222111 12399
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
.|+.-.|
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9998777
No 277
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.58 E-value=0.05 Score=48.18 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred CeEEEechhhHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 117 GCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
|...+|.+.-+++...+- --..+.|+++|...||.+..+|+++ ++.++|+++|++-+..........-+ .+.|++
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~ 89 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRITF 89 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceEE
Confidence 667777777666544321 1135699999999999998887654 56799999999755543222111111 156999
Q ss_pred EeccCCCCCCC-----CCCCCCccEEEECCC
Q 019692 193 LHGDFLNLDPK-----DPAYSEVRAILLDPS 218 (337)
Q Consensus 193 ~~~D~~~~~~~-----~~~~~~fD~IlvDpP 218 (337)
+.+|..+.... .........|+.|.-
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 99998764311 111134568888866
No 278
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.13 E-value=0.36 Score=44.71 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCeEEeecCCchh----HHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHH------H---------HHh------C--
Q 019692 138 GWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDT------I---------KLS------G-- 186 (337)
Q Consensus 138 g~~VLDl~aG~G~----kt~~la~~~~~----~g~V~avD~~~~~l~~l~~~------~---------~~~------g-- 186 (337)
.-+|+-++|++|- .+..+.+..+. ..+|+|.|+|...++.|+.- . +++ |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4589999999995 34444555432 46899999999999987642 1 111 1
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 187 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 187 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
+ +.|.+...|...-.+ ..+.||+|+| |+.=+ |. -...|.++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfC-----------RNVLI------------YF-------d~~~q~~i 223 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFC-----------RNVLI------------YF-------DEETQERI 223 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEE-----------cceEE------------ee-------CHHHHHHH
Confidence 0 135556666554432 1367999996 12111 11 13458899
Q ss_pred HHHHhCCCCCcEEEEE
Q 019692 261 LRHALSFPGVERVVYS 276 (337)
Q Consensus 261 L~~A~~~~~~G~lvYs 276 (337)
++.-...+++|.++|.
T Consensus 224 l~~f~~~L~~gG~Lfl 239 (268)
T COG1352 224 LRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 9998888887555553
No 279
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.04 E-value=0.25 Score=51.62 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=76.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC------C-----CCEEEEEeCCHHHHHHHHHHH--------------HH-----hC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK------G-----KGKIVACELNKERVRRLKDTI--------------KL-----SG 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~------~-----~g~V~avD~~~~~l~~l~~~~--------------~~-----~g 186 (337)
+.-+|+|+|-|+|..++...+... + .-+++++|..+-..+.+++.+ +. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999998777766551 1 237899998653222222211 11 13
Q ss_pred CC---------cEEEEeccCCCCCCCCCCCCCccEEEECC--CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHH
Q 019692 187 AA---------NIEVLHGDFLNLDPKDPAYSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 255 (337)
Q Consensus 187 ~~---------~v~~~~~D~~~~~~~~~~~~~fD~IlvDp--PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (337)
+. ++++..+|+.+..+... ..||+|++|+ | .++|+. |+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP-------~~np~~-------------W~--------- 185 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAP-------AKNPDM-------------WS--------- 185 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCC-------ccChhh-------------cc---------
Confidence 21 25567788876554432 4699999996 5 456664 12
Q ss_pred HHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 256 FQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 256 ~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
.+++....++.++ |+++--|+ ...|.+-|. ..||++..
T Consensus 186 --~~~~~~l~~~~~~~~~~~t~t~-------a~~vr~~l~---~~GF~v~~ 224 (662)
T PRK01747 186 --PNLFNALARLARPGATLATFTS-------AGFVRRGLQ---EAGFTVRK 224 (662)
T ss_pred --HHHHHHHHHHhCCCCEEEEeeh-------HHHHHHHHH---HcCCeeee
Confidence 4556666666666 55552233 377887774 45787753
No 280
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.71 E-value=0.16 Score=46.49 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+|....|+||+|||.|.++-+. .-.|++||.-+-+ .++-.. ..|+-...|...+.+.. .+.|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dt--g~v~h~r~DGfk~~P~r---~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDT--GQVTHLREDGFKFRPTR---SNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcc--cceeeeeccCcccccCC---CCCceEE
Confidence 468999999999999999988764 5799999976532 222222 34888889988887632 5789999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
||.-
T Consensus 276 CDmV 279 (358)
T COG2933 276 CDMV 279 (358)
T ss_pred eehh
Confidence 9853
No 281
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.57 E-value=0.43 Score=43.68 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=71.2
Q ss_pred HHhCCCC-CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~-g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+...+ ...|.|+|||-+-.+. +....|+++|+.. .|=.++.+|..+++..+ ++
T Consensus 173 ~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d---~s 228 (325)
T KOG3045|consen 173 RKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVA---------------VNERVIACDMRNVPLED---ES 228 (325)
T ss_pred HHHHhCcCceEEEecccchhhhhh------ccccceeeeeeec---------------CCCceeeccccCCcCcc---Cc
Confidence 3344444 4578999999996554 2346799999753 23457788999988765 68
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv 289 (337)
+|+++. |-++ +.- ++ ...+..|.+.|++|.++|..---+..+.-...
T Consensus 229 vDvaV~---CLSL--Mgt-------------n~---------------~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f 275 (325)
T KOG3045|consen 229 VDVAVF---CLSL--MGT-------------NL---------------ADFIKEANRILKPGGLLYIAEVKSRFSDVKGF 275 (325)
T ss_pred ccEEEe---eHhh--hcc-------------cH---------------HHHHHHHHHHhccCceEEEEehhhhcccHHHH
Confidence 999886 4321 110 01 46788999999988788864433444443333
Q ss_pred HHHhchhcCCCcEEe
Q 019692 290 KSVLPIAMSFGFQLA 304 (337)
Q Consensus 290 ~~~l~~~~~~~~~~~ 304 (337)
.+.| ..-||++.
T Consensus 276 ~r~l---~~lGF~~~ 287 (325)
T KOG3045|consen 276 VRAL---TKLGFDVK 287 (325)
T ss_pred HHHH---HHcCCeee
Confidence 3333 34455554
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.57 E-value=0.37 Score=46.31 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCCCCeEEeecCCchhHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q 019692 134 APKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDT 181 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt-~~la~~~~~~g~V~avD~~~~~l~~l~~~ 181 (337)
...++++|+=+||||=|.. .++++. .+..+|+++|.++.+++.+++.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence 3455669999999997654 555555 4568999999999999988774
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.00 E-value=0.21 Score=44.88 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEec-cCCCCCCCC-CCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLHG-DFLNLDPKD-PAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~-v~~~~~-D~~~~~~~~-~~~~~fD~ 212 (337)
++-++||+|.|.--+--.+..... +-+-++.|+|+..++.++.++..+ ++.+ |++... |...+-+.. ...+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456889998876544333333222 247889999999999999999887 6655 766554 332222211 11357999
Q ss_pred EEECCCCCCc
Q 019692 213 ILLDPSCSGS 222 (337)
Q Consensus 213 IlvDpPCSg~ 222 (337)
++|+||.-++
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999996543
No 284
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.97 E-value=1.9 Score=40.22 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+.+||=.| |+|..+.+++..+... .+|++++.+..............+. .+++++.+|..+.......+..+|.|+.
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45676444 6899999988876433 4788888765443322222111122 3688999998765422111245799998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEM-ERLNKLSAFQKKALRHALSFPGVERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsT 277 (337)
-+....... .. .. +....-..-...+|+.+.+....+.+||++
T Consensus 83 ~A~~~~~~~--~~-----------------~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~S 126 (322)
T PLN02662 83 TASPFYHDV--TD-----------------PQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTS 126 (322)
T ss_pred eCCcccCCC--CC-----------------hHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 775432110 00 11 222233444566777766543446777753
No 285
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.88 E-value=2.7 Score=38.29 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=78.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~Il 214 (337)
.+|.. |...+|+--.+.++ ++...++.++|+.++-...++.++. +..+|++..+|...... ..+...+=-.|+
T Consensus 88 N~~~~-l~~YpGSP~lA~~l---lR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVL 161 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQL---LREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVL 161 (279)
T ss_pred CCCCC-cccCCCCHHHHHHH---cchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEE
Confidence 45555 88888887555444 4456799999999999999999987 56789999999654221 111123345899
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+|||.-- +++..++. +-|+.+++.-..|.. |-+.|.-+-..+++|++
T Consensus 162 IDPPfE~-------------------------~~eY~rvv----~~l~~~~kRf~~g~y----aiWYPik~r~~~~~f~~ 208 (279)
T COG2961 162 IDPPFEL-------------------------KDEYQRVV----EALAEAYKRFATGTY----AIWYPIKDRRQIRRFLR 208 (279)
T ss_pred eCCCccc-------------------------ccHHHHHH----HHHHHHHHhhcCceE----EEEEeecchHHHHHHHH
Confidence 9999421 22233333 334445442232432 33677778888888886
Q ss_pred hhcC
Q 019692 295 IAMS 298 (337)
Q Consensus 295 ~~~~ 298 (337)
..+.
T Consensus 209 ~L~~ 212 (279)
T COG2961 209 ALEA 212 (279)
T ss_pred HHhh
Confidence 4433
No 286
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.81 E-value=2 Score=40.30 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.|.+||-.| |+|+.+.+++..+. .+..|+++..+..............+. .++.++.+|..+..........+|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356777665 78889999887653 335788777766544433222222232 358888999877542211123579888
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 8653
No 287
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.75 E-value=2.1 Score=43.89 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHh-----CC---CcEEEEeccCCCCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS-----GA---ANIEVLHGDFLNLDPK 203 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~-----g~---~~v~~~~~D~~~~~~~ 203 (337)
++.+.|..||-.| |+|+.+.++++.+ ..+..|++++.+...+..+.+.+... |. .++.++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 3445677777555 5688888887765 34468999999988887766655442 21 2488899998865422
Q ss_pred CCCCCCccEEEEC
Q 019692 204 DPAYSEVRAILLD 216 (337)
Q Consensus 204 ~~~~~~fD~IlvD 216 (337)
...++.+|+||+.
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 2224578999874
No 288
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.50 E-value=3.2 Score=35.41 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=67.7
Q ss_pred chhhHHHHHH-hC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 123 GKASSMVAAA-LA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 123 d~ss~l~~~~-l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
|+.+..++.. ++ ..++.+|+-+||=+-...+ .........++-.|.|.+-- .+|- + .++.-|....
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~RF~--------~~~~-~-~F~fyD~~~p 76 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRRFE--------QFGG-D-EFVFYDYNEP 76 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecchHH--------hcCC-c-ceEECCCCCh
Confidence 4444444443 33 2356789877776665444 33233456889999986543 2332 2 3555555443
Q ss_pred C---CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 201 D---PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 201 ~---~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
. ... .++||+|++|||- + +.+- +.+....+..+.++ +.|+.+
T Consensus 77 ~~~~~~l--~~~~d~vv~DPPF-----l--------------------~~ec-------~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 77 EELPEEL--KGKFDVVVIDPPF-----L--------------------SEEC-------LTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhhhhc--CCCceEEEECCCC-----C--------------------CHHH-------HHHHHHHHHHHhCccceEEEe
Confidence 2 111 2589999999995 1 1111 12222222223343 677763
Q ss_pred cCCCCcccCHHHHHHHh
Q 019692 277 TCSIHQVENEDVIKSVL 293 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l 293 (337)
..++++..+.+.|
T Consensus 123 ----Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 ----TGEEMEELIKKLL 135 (162)
T ss_pred ----cHHHHHHHHHHHh
Confidence 5788999999888
No 289
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.05 E-value=0.81 Score=43.12 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
+.+..+++||++|.=.|.|.=|.+..+.....+..+|+++|++++..+.++ .+|+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaT 239 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGAT 239 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcc
Confidence 345578899999999999988888888777778899999999999998765 45653
No 290
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.89 E-value=0.55 Score=41.20 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=37.1
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHH
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 173 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~ 173 (337)
+..+++|++|+|+--|.|++|..++..++++|.|+++-..+.
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 456899999999999999999999999999999999765544
No 291
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.77 E-value=0.25 Score=43.15 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHH------------HHHHhC-CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 147 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKD------------TIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 147 G~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~------------~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
|.|+.++.+|..+... .+|+++|+++++++.+++ .+++.. -.+..+. .|.... ....|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a------i~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA------IKDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH------HHH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh------hhccce
Confidence 5555555555544333 599999999999887552 222221 1233333 222211 134688
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
+|+-.|.--.+ .+.+|+ ..+ ...++...+.+++|.+|---+|+-|.-.++++..+
T Consensus 80 ~~I~VpTP~~~--~~~~Dl----------------s~v-------~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~i 134 (185)
T PF03721_consen 80 VFICVPTPSDE--DGSPDL----------------SYV-------ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPI 134 (185)
T ss_dssp EEE----EBET--TTSBET----------------HHH-------HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHH
T ss_pred EEEecCCCccc--cCCccH----------------HHH-------HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhh
Confidence 88877743322 122232 111 22333333344557888888999999999999999
Q ss_pred hchhcC--CCcEEecCCCCCCcchh
Q 019692 293 LPIAMS--FGFQLATPFPNGTAEAS 315 (337)
Q Consensus 293 l~~~~~--~~~~~~~~~~~~~~~~~ 315 (337)
|+.... .+|.+.. .|+.-..|.
T Consensus 135 le~~~~~~~~f~la~-~PErl~~G~ 158 (185)
T PF03721_consen 135 LEKRSGKKEDFHLAY-SPERLREGR 158 (185)
T ss_dssp HHHHCCTTTCEEEEE-------TTS
T ss_pred hhhhcccccCCeEEE-CCCccCCCC
Confidence 975433 4566643 355545443
No 292
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.76 E-value=0.4 Score=46.47 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=67.4
Q ss_pred CchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----------C--CCCCCCCCCccEE
Q 019692 147 APGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----------L--DPKDPAYSEVRAI 213 (337)
Q Consensus 147 G~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~----------~--~~~~~~~~~fD~I 213 (337)
|-|+.++.+|..+.. +.+|+++|+++.+++.+.+- - ..+..-+... + ..........|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----~--~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----E--SYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----c--ceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 566666666555433 36899999999999865432 1 1111111100 0 0000011256888
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHh
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
++-.|---.+ .+.||+.. + .+..+...+.++.|.||-.--|..|.-.|+++..+|
T Consensus 89 iI~VPTPl~~--~~~pDls~----------------v-------~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll 143 (436)
T COG0677 89 IICVPTPLKK--YREPDLSY----------------V-------ESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL 143 (436)
T ss_pred EEEecCCcCC--CCCCChHH----------------H-------HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 8777743333 24555311 1 223334445677788888888899999999999999
Q ss_pred ch
Q 019692 294 PI 295 (337)
Q Consensus 294 ~~ 295 (337)
+.
T Consensus 144 e~ 145 (436)
T COG0677 144 EE 145 (436)
T ss_pred hh
Confidence 64
No 293
>PLN00198 anthocyanidin reductase; Provisional
Probab=89.62 E-value=3.8 Score=38.65 Aligned_cols=83 Identities=10% Similarity=0.136 Sum_probs=48.8
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
|.+..+.+||=. .|+|..+.+++..+-.. .+|+++..+......... +... ...++.++.+|..+..........+
T Consensus 4 ~~~~~~~~vlIt-G~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 4 LTPTGKKTACVI-GGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred ccCCCCCeEEEE-CCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHhcC
Confidence 345557777744 46699999998876433 478877766543322221 1111 1235888999987653211112457
Q ss_pred cEEEECC
Q 019692 211 RAILLDP 217 (337)
Q Consensus 211 D~IlvDp 217 (337)
|.|+.-+
T Consensus 82 d~vih~A 88 (338)
T PLN00198 82 DLVFHVA 88 (338)
T ss_pred CEEEEeC
Confidence 9888755
No 294
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.59 E-value=0.65 Score=44.94 Aligned_cols=84 Identities=23% Similarity=0.261 Sum_probs=65.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~ 209 (337)
.....+++..++|++||.|+.+..++..- ...++++|.++..+.+........++++ -.++.+|+...+..+ ..
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~ 178 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NT 178 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cc
Confidence 33456788899999999999999998873 4689999999999999888888887765 445778888887665 56
Q ss_pred ccEEE-ECCCC
Q 019692 210 VRAIL-LDPSC 219 (337)
Q Consensus 210 fD~Il-vDpPC 219 (337)
||.+- +|.-|
T Consensus 179 fd~v~~ld~~~ 189 (364)
T KOG1269|consen 179 FDGVRFLEVVC 189 (364)
T ss_pred cCcEEEEeecc
Confidence 77663 44444
No 295
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.32 E-value=3.9 Score=36.79 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.++|=.| |+|+.+.++++.+. .+.+|+.++.+...++.+.+.+...+. ++.++.+|..+...- .....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466788666 67788888887663 235899999998888877777665543 477888898764311 01124
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
.+|.|+..+..+
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999876543
No 296
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=0.86 Score=38.25 Aligned_cols=70 Identities=26% Similarity=0.232 Sum_probs=55.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 204 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~ 204 (337)
+.-.+.++.+|+|+|-|..-++.++. +...-+++|+++..+...+-..-+.|+.. +.+...|....+..+
T Consensus 68 l~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 68 LRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred ccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 33456678999999999988877775 23567999999999999998888888854 888888887766443
No 297
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.14 E-value=3.9 Score=38.90 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+||=.| |+|..+.++++.+... ..|++++.+......+...+.. ..+++++.+|..+..........+|.|+.-
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 66788665 5799999988876433 4899988876554443333221 245888889987643211112357999887
Q ss_pred CCCCC
Q 019692 217 PSCSG 221 (337)
Q Consensus 217 pPCSg 221 (337)
+..++
T Consensus 87 A~~~~ 91 (353)
T PLN02896 87 AASME 91 (353)
T ss_pred Ccccc
Confidence 76544
No 298
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.14 E-value=5.5 Score=37.26 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.|.+|| +.-|+|..+.+++..+.. +.+|+++..+....+.........+. .+++++.+|..+...-......+|.|+
T Consensus 4 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 4 GGKLVC-VTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 355666 555889999998886533 34788766555443333332222222 358889999876542211123579898
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 83 h~A~ 86 (322)
T PLN02986 83 HTAS 86 (322)
T ss_pred EeCC
Confidence 8654
No 299
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=88.01 E-value=3.7 Score=38.78 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~---g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
|.+||=.| |+|+.+.+++..+... ..|++++.+......+.+.+ +-.++.++.+|..+...-...+..+|.|+
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 56777555 5788999988865322 47999988765443332222 22458889999887542211124589998
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+-
T Consensus 80 h~Ag 83 (324)
T TIGR03589 80 HAAA 83 (324)
T ss_pred ECcc
Confidence 7554
No 300
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.11 E-value=18 Score=32.71 Aligned_cols=80 Identities=11% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CCCCCCc
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DPAYSEV 210 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~~~~~f 210 (337)
|.++|-.|++ |+.+..++..+- .+.+|+.++.+...++.+.+.++...-.++.++..|+.+.... ...++.+
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 5677766644 567777776553 3458999999998888877776554223578888888764311 0113568
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|.++..+-
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 98887653
No 301
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=86.95 E-value=15 Score=32.49 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=53.1
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-------CCCCCCCCcc
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-------PKDPAYSEVR 211 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~-------~~~~~~~~fD 211 (337)
+||=.| |+|+.+..++..+. .+.+|++++.+....+.+...++..+ .++.++..|..+.. .........|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455444 67888888887653 34589999999888887777666554 35888888887643 1111134579
Q ss_pred EEEECCCCC
Q 019692 212 AILLDPSCS 220 (337)
Q Consensus 212 ~IlvDpPCS 220 (337)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999876543
No 302
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.91 E-value=0.39 Score=47.82 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=53.7
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEe-----CCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACE-----LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD-----~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+||+|||+|+++..|.+. .|+.+- ..+..++.+- +.|+.-+.-+- -...++..+ +.||.|=
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfal----eRGvpa~~~~~-~s~rLPfp~---~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFAL----ERGVPAMIGVL-GSQRLPFPS---NAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhh----hcCcchhhhhh-ccccccCCc---cchhhhh
Confidence 6899999999999888774 233333 2333333322 23554321111 123344332 5788885
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
||...+- | .+.+ -.+|-..-++|++ |.+|+|.=-+.
T Consensus 187 ----csrc~i~-------W------------~~~~--------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 ----CSRCLIP-------W------------HPND--------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ----ccccccc-------c------------hhcc--------cceeehhhhhhccCceEEecCCccc
Confidence 7765420 1 1111 1245555566776 89999877666
No 303
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.78 E-value=1.9 Score=41.14 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
+.+.+++++|++|.=.|+|-=+.+......+.+.++|+|+|+++++++.++ ++|..
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT 232 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGAT 232 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCc
Confidence 456678999999999999877766666555567889999999999998765 45653
No 304
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=86.76 E-value=0.69 Score=41.67 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHHhCCC-CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
.++-...+.+ ..-.++|+||+.|...-++... +-++++-+|.|..|++.++..-. .++. +....+|-+.++...
T Consensus 61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~qd-p~i~-~~~~v~DEE~Ldf~e- 135 (325)
T KOG2940|consen 61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQD-PSIE-TSYFVGDEEFLDFKE- 135 (325)
T ss_pred HHHHHHHHHhhhCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccCC-CceE-EEEEecchhcccccc-
Confidence 3444444443 3468999999999998887653 35789999999999988765421 2322 455667766666443
Q ss_pred CCCCccEEEE
Q 019692 206 AYSEVRAILL 215 (337)
Q Consensus 206 ~~~~fD~Ilv 215 (337)
++||.|+.
T Consensus 136 --ns~DLiis 143 (325)
T KOG2940|consen 136 --NSVDLIIS 143 (325)
T ss_pred --cchhhhhh
Confidence 67899873
No 305
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.75 E-value=0.14 Score=45.28 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
..++||+|||-|-.|.+|+..+ .+|+|.|.|..|..++++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 4689999999999999998876 469999999888766543
No 306
>PLN02214 cinnamoyl-CoA reductase
Probab=86.64 E-value=10 Score=36.10 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHH-HHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRL-KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l-~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.+||=.| |+|..+.+++..+.. +.+|++++.+....... ...+.. +..++.++.+|..+...-......+|.|+
T Consensus 9 ~~~~vlVTG-atGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTG-AGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 466788665 578999988876533 35899988875543211 111211 12358888899876432211124578888
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7654
No 307
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.37 E-value=9.3 Score=34.74 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=54.2
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~------~~~~~ 209 (337)
+..+|-.| |+|+.+..++..+ ..+..|++++.+++.++...+.+...+. .++.++..|..+..... ...+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34566555 5666777776654 3345899999998888777766665554 35888889987643210 11246
Q ss_pred ccEEEECCCCCC
Q 019692 210 VRAILLDPSCSG 221 (337)
Q Consensus 210 fD~IlvDpPCSg 221 (337)
+|.|+..+..+.
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799998765443
No 308
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.03 E-value=7.7 Score=34.57 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.+|| +..|+|+.+.+++..+. .+.+|+.++.++...+.+...++..+ .++.++..|+.+...-. ...+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 44567888888888653 33589999999988887777776655 35788888887543110 01246
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998654
No 309
>PRK06194 hypothetical protein; Provisional
Probab=85.86 E-value=8 Score=35.35 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.+|| +.-|+|+.+.+++..+. .+.+|+.+|.+...++...+.+...+. ++.++.+|+.+...-. ..++.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 44466778888887653 345899999998887776666655443 4778889987643110 11246
Q ss_pred ccEEEECCCCCC
Q 019692 210 VRAILLDPSCSG 221 (337)
Q Consensus 210 fD~IlvDpPCSg 221 (337)
+|.|+..+.-++
T Consensus 84 id~vi~~Ag~~~ 95 (287)
T PRK06194 84 VHLLFNNAGVGA 95 (287)
T ss_pred CCEEEECCCCCC
Confidence 799998775443
No 310
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.76 E-value=2.2 Score=35.33 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=29.1
Q ss_pred eecCCch--hHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHH--HHHh
Q 019692 143 DACSAPG--NKTVHLA-ALMKGKGKIVACELNKERVRRLKDT--IKLS 185 (337)
Q Consensus 143 Dl~aG~G--~kt~~la-~~~~~~g~V~avD~~~~~l~~l~~~--~~~~ 185 (337)
|+||..| ..+..+. +...+.++|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666554 3455678999999999999999999 5544
No 311
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=85.64 E-value=8.8 Score=36.68 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=69.4
Q ss_pred HHhCCCCC----CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 131 AALAPKPG----WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 131 ~~l~~~~g----~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+....| ...+|+|+|.|..+-.+.... + .|-+++.+..-+-.+..++. .| |+.+-+|...-.|
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P---- 235 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTP---- 235 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC---cceecccccccCC----
Confidence 33444445 789999999999999988854 3 48899999888877777765 45 6667777543322
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+-|+|++= -|. -+ |+.++. .++|++..+-+++ |.|+-.-+
T Consensus 236 --~~daI~mk-WiL--------------hd--------wtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 --KGDAIWMK-WIL--------------HD--------WTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred --CcCeEEEE-eec--------------cc--------CChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 23566641 000 01 244443 5789999987776 88777666
No 312
>PLN02650 dihydroflavonol-4-reductase
Probab=85.49 E-value=6.5 Score=37.33 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..+|| +..|+|..+.+++..+-. +.+|++++.+......+.......+. .++.++.+|..+...-......+|.|+.
T Consensus 5 ~k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 5 KETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 34566 556889999998887643 34899888876655544333222232 2478888998765322111235788887
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
-+.
T Consensus 84 ~A~ 86 (351)
T PLN02650 84 VAT 86 (351)
T ss_pred eCC
Confidence 664
No 313
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.44 E-value=0.95 Score=42.63 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=53.7
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC----CCCCCCccEEEE
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK----DPAYSEVRAILL 215 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~----~~~~~~fD~Ilv 215 (337)
-+|+|.|.--.-..+..... +-.-+|.|+++..+..+++|..+++... |.+++......... ......||+++|
T Consensus 106 GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 47887776544444444333 3678999999999999999999998754 66666543222111 111235999999
Q ss_pred CCCCCC
Q 019692 216 DPSCSG 221 (337)
Q Consensus 216 DpPCSg 221 (337)
+||..-
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 999653
No 314
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.31 E-value=12 Score=35.48 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+..||=.| |+|+.+..++..+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 355677665 56667777776553 345899999999998888888877664 477888888764311 01235
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++.++.
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 7899998764
No 315
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=85.10 E-value=1.4 Score=38.77 Aligned_cols=105 Identities=15% Similarity=0.251 Sum_probs=59.9
Q ss_pred CCeEEeecCCchhHHHHHHHHc----CC----CCEEEEEeCCHHHHHHHHHH--------------HHHh-----C----
Q 019692 138 GWKVLDACSAPGNKTVHLAALM----KG----KGKIVACELNKERVRRLKDT--------------IKLS-----G---- 186 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~----~~----~g~V~avD~~~~~l~~l~~~--------------~~~~-----g---- 186 (337)
.-+|+.+||++|-=+..||-++ .. ..+|+|.|+|+..++.|++- .+++ |
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999997433333322 11 24899999999999987652 1222 1
Q ss_pred C-----CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 019692 187 A-----ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL 261 (337)
Q Consensus 187 ~-----~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL 261 (337)
+ ++|++...|..+.++ ..+.||+|+| -.. + + |.+ .+.|.+++
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~C----RNV--l-----I------------YF~-------~~~~~~vl 158 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDP---PFGRFDLIFC----RNV--L-----I------------YFD-------PETQQRVL 158 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S---------EEEEEE-----SS--G-----G------------GS--------HHHHHHHH
T ss_pred EChHHcCceEEEecccCCCCc---ccCCccEEEe----cCE--E-----E------------EeC-------HHHHHHHH
Confidence 1 258899999887222 2478999995 221 1 1 111 24578999
Q ss_pred HHHhCCCCC-cEEEE
Q 019692 262 RHALSFPGV-ERVVY 275 (337)
Q Consensus 262 ~~A~~~~~~-G~lvY 275 (337)
+.....+++ |.|+-
T Consensus 159 ~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 159 RRLHRSLKPGGYLFL 173 (196)
T ss_dssp HHHGGGEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEE
Confidence 999998887 66654
No 316
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=85.10 E-value=3.1 Score=41.15 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH-----------HHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 146 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-----------KLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 146 aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~-----------~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
-|.|+.++.+|..+.....|+++|+++.+++.+++.. ...| ++.+. .+... ....|+||
T Consensus 12 IGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t-~~~~~-------~~~advvi 81 (425)
T PRK15182 12 IGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR--YLKFT-SEIEK-------IKECNFYI 81 (425)
T ss_pred ECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEE-eCHHH-------HcCCCEEE
Confidence 3777788887777655579999999999998877221 1111 11111 11111 23578888
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+-.|-.-.. ...+ ++..+-.- .+...+.+++|.+|-...|+.|...++++...++
T Consensus 82 i~Vptp~~~--~~~~-------------------dl~~v~~a----~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 82 ITVPTPINT--YKQP-------------------DLTPLIKA----SETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred EEcCCCCCC--CCCc-------------------chHHHHHH----HHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 866622100 0011 11111111 1222233456888888899999999999998886
Q ss_pred h
Q 019692 295 I 295 (337)
Q Consensus 295 ~ 295 (337)
.
T Consensus 137 ~ 137 (425)
T PRK15182 137 R 137 (425)
T ss_pred h
Confidence 4
No 317
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.60 E-value=7.4 Score=37.01 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=32.4
Q ss_pred CCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeC---CHHHHHHHHHHHHHhCCC
Q 019692 135 PKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACEL---NKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 135 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~---~~~~l~~l~~~~~~~g~~ 188 (337)
+++|++||=.|+|+ |..+.++|+.++ .+|++++. ++.+++.+ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 46899999888754 334566666653 47999987 56666654 456764
No 318
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.47 E-value=3.4 Score=39.99 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=37.7
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
-++..+.+-.+-+.|+|+|+|.|..+..|+-. .+-.|+|||-|....+++++
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHHH
Confidence 34444445555679999999999998888664 35789999999665554443
No 319
>PRK11524 putative methyltransferase; Provisional
Probab=84.18 E-value=1.3 Score=41.24 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=43.5
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 188 ~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
.+.+++++|..++....+ .++||+|++|||.-. |. ...+. ...+. ..+....-...+..+.++
T Consensus 7 ~~~~i~~gD~~~~l~~l~-~~siDlIitDPPY~~-~~--~~~~~----------~~~~~---~~~~~~~l~~~l~~~~rv 69 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-SESVDLIFADPPYNI-GK--NFDGL----------IEAWK---EDLFIDWLYEWIDECHRV 69 (284)
T ss_pred CCCEEEeccHHHHHHhcc-cCcccEEEECCCccc-cc--ccccc----------ccccc---HHHHHHHHHHHHHHHHHH
Confidence 345788899887543322 257999999999742 11 00000 00011 123334456888888898
Q ss_pred CCCcEEEEEcCCC
Q 019692 268 PGVERVVYSTCSI 280 (337)
Q Consensus 268 ~~~G~lvYsTCS~ 280 (337)
+++|..+|.-|+.
T Consensus 70 LK~~G~i~i~~~~ 82 (284)
T PRK11524 70 LKKQGTMYIMNST 82 (284)
T ss_pred hCCCcEEEEEcCc
Confidence 8885444544554
No 320
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.07 E-value=12 Score=33.49 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.+||=.| |+|+.+..+++.+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 367888666 57778888877653 345899999999888877777766553 477788888764311 11134
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
..|.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999986643
No 321
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=83.75 E-value=13 Score=35.07 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=34.0
Q ss_pred CCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...+|++||=.|||+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 455799999887643 22345556654 3347999999999887664 467653
No 322
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.74 E-value=30 Score=31.16 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.++|-.|++ |+.+.+++..+ ..+.+|+.++.+++.++.+...++..|. ++.++..|..+.... ...++
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 35677766655 45666666544 3346899999999888888877776553 477888888764311 01135
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+..
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 323
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.93 E-value=16 Score=34.76 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.+..||=.|+ +|+.+..++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|..+..... ..++
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3567775554 5667777777543 346899999999999988888877764 4677778876533110 1125
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++.++-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 324
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.91 E-value=23 Score=33.41 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=35.6
Q ss_pred hCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||=.|+|+-+ .+.++|+.++ .+|++++.++++++.+ +++|.+.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 567889999988875433 3455666642 4799999998886554 4578754
No 325
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.89 E-value=8.9 Score=34.32 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.++|=.|+ +|+.+.+++..+. .+.+|+.++.+.+.++.+.+.++..+ .++.++..|..+.... ...++
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3677887775 4566777776653 34589999999988888877777655 3577888888764311 01135
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.++..+.
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899998764
No 326
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=82.61 E-value=16 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=36.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
..-+||--|||.|..+..+|.+ +..+.|+|.|--|+-...-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 4568999999999999999997 4689999999999765554443
No 327
>PRK09242 tropinone reductase; Provisional
Probab=82.39 E-value=22 Score=31.84 Aligned_cols=80 Identities=8% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|..+|-.|+ +|+.+..++..+. .+.+|+.++.+.+.++.+...+.... -.++.++..|+.+.... ...++
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 667777765 5566677666543 34689999999888887777776541 13477888888764210 11235
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.|+..+.
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 7899987654
No 328
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=82.29 E-value=2.7 Score=38.86 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=42.7
Q ss_pred CeEEeecCCchh--HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 139 WKVLDACSAPGN--KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 139 ~~VLDl~aG~G~--kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
...||+|||--. .+-.+|+...+..+|+-+|+++-.+..++..+....-....++.+|.++..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 579999999653 577888888899999999999999999998887653223889999988753
No 329
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=82.18 E-value=1.4 Score=40.94 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=44.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|..++|.|||.|--+. ..+...++++|++...+..+++. |. ..+..+|+.+++... ..||.++.
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~p~~~---~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKLPFRE---ESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----CC--ceeehhhhhcCCCCC---Cccccchh
Confidence 48899999999994321 12445799999988777654422 22 257778998888664 56787763
No 330
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.03 E-value=4.9 Score=38.88 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=39.0
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~ 181 (337)
...+.+|++||..|+|+ |..+.++|+..+ ...|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 45567899999999887 777888888763 34699999999988877764
No 331
>PRK07904 short chain dehydrogenase; Provisional
Probab=81.91 E-value=5.9 Score=35.80 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHc-CC-CCEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEeccCCCCCCC------CCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALM-KG-KGKIVACELNKER-VRRLKDTIKLSGAANIEVLHGDFLNLDPK------DPA 206 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~-~~-~g~V~avD~~~~~-l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~~ 206 (337)
..+.+||-.|+ +|+.+..++..+ .. ..+|+.++.+++. ++.+.+.++..+..++.++..|..+.... ...
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 34667886765 677888888764 32 2589999998775 77777777766655688999998764321 001
Q ss_pred CCCccEEEEC
Q 019692 207 YSEVRAILLD 216 (337)
Q Consensus 207 ~~~fD~IlvD 216 (337)
.+..|.++..
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 2468988874
No 332
>PRK07677 short chain dehydrogenase; Provisional
Probab=81.69 E-value=36 Score=30.32 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=51.6
Q ss_pred CeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCc
Q 019692 139 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 210 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~f 210 (337)
.++|-.|+ +|+.+.+++..+. .+.+|+.++.+...++.+.+.++..+ .++.++..|..+.... ...++..
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46675555 5556777766543 34589999999888887777766554 3578888887653211 0113468
Q ss_pred cEEEECCCC
Q 019692 211 RAILLDPSC 219 (337)
Q Consensus 211 D~IlvDpPC 219 (337)
|.|+..+..
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999987653
No 333
>PTZ00357 methyltransferase; Provisional
Probab=81.54 E-value=6.6 Score=40.99 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=48.6
Q ss_pred eEEeecCCchhH---HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-hCC--------CcEEEEeccCCCCCCCC---
Q 019692 140 KVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKL-SGA--------ANIEVLHGDFLNLDPKD--- 204 (337)
Q Consensus 140 ~VLDl~aG~G~k---t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~-~g~--------~~v~~~~~D~~~~~~~~--- 204 (337)
.|+=+|||-|-. ++..++..+-+-+|+|||.|+..+.....+... ..- ..|+++..|.+.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 588999999986 444455555556899999996644333333211 112 23999999999885321
Q ss_pred -----CCCCCccEEEEC
Q 019692 205 -----PAYSEVRAILLD 216 (337)
Q Consensus 205 -----~~~~~fD~IlvD 216 (337)
..++++|+|+..
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 112468888743
No 334
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=81.46 E-value=17 Score=32.04 Aligned_cols=80 Identities=8% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||=.| |+|+.+.+++..+. .+.+|++++.+...+..+...+...+ .++.++..|..+...- ...+..
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788555 56777877776543 34589999999887777666666544 3488888888764210 011246
Q ss_pred ccEEEECCCC
Q 019692 210 VRAILLDPSC 219 (337)
Q Consensus 210 fD~IlvDpPC 219 (337)
+|.|+..+..
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999987753
No 335
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=81.44 E-value=2.6 Score=42.43 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=54.0
Q ss_pred eEEeecCCchhH---HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 140 KVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 140 ~VLDl~aG~G~k---t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|+=+|+|.|-. ++..|.....+-+++|+|.++.++..++. .+....+ .|+++..|.+.+.+. ..+.|.++.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~VS 445 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADIIVS 445 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccchHH
Confidence 578889999875 55566666667799999999999998876 3333333 499999999988743 245677764
Q ss_pred C
Q 019692 216 D 216 (337)
Q Consensus 216 D 216 (337)
.
T Consensus 446 E 446 (649)
T KOG0822|consen 446 E 446 (649)
T ss_pred H
Confidence 3
No 336
>PRK13699 putative methylase; Provisional
Probab=81.28 E-value=1.4 Score=39.79 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=43.6
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 190 IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
++++++|..+.....+ .+++|+|+.|||.- .|.-.+. + ... .. ....+.....+..+.+.++
T Consensus 2 ~~l~~gD~le~l~~lp-d~SVDLIiTDPPY~-i~~~~~~-~---------~~~---~~---~~~~ew~~~~l~E~~RVLK 63 (227)
T PRK13699 2 SRFILGNCIDVMARFP-DNAVDFILTDPPYL-VGFRDRQ-G---------RTI---AG---DKTDEWLQPACNEMYRVLK 63 (227)
T ss_pred CeEEechHHHHHHhCC-ccccceEEeCCCcc-cccccCC-C---------ccc---cc---ccHHHHHHHHHHHHHHHcC
Confidence 3577888876543332 36899999999984 2211100 0 000 00 1122344677888888888
Q ss_pred CcEEEEEcCCCC
Q 019692 270 VERVVYSTCSIH 281 (337)
Q Consensus 270 ~G~lvYsTCS~~ 281 (337)
+|..+|+-|+.+
T Consensus 64 pgg~l~if~~~~ 75 (227)
T PRK13699 64 KDALMVSFYGWN 75 (227)
T ss_pred CCCEEEEEeccc
Confidence 877777777765
No 337
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=80.82 E-value=2.3 Score=33.19 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=36.7
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|| ++||.|..|..+++. +++.++..|++ +++......++... ...+|+|++-|.
T Consensus 3 Il-l~C~~GaSSs~la~k-------------------m~~~a~~~gi~-~~i~a~~~~e~~~~---~~~~Dvill~PQ 56 (99)
T cd05565 3 VL-VLCAGGGTSGLLANA-------------------LNKGAKERGVP-LEAAAGAYGSHYDM---IPDYDLVILAPQ 56 (99)
T ss_pred EE-EECCCCCCHHHHHHH-------------------HHHHHHHCCCc-EEEEEeeHHHHHHh---ccCCCEEEEcCh
Confidence 45 667888777766654 45666777875 77777666655433 356899998776
No 338
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=80.44 E-value=3.1 Score=39.25 Aligned_cols=42 Identities=17% Similarity=0.018 Sum_probs=31.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~ 182 (337)
.-+||--|||.|..+.-+|.. .-.+-+.|.|--|+-.-.-.+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~FiL 192 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSSFIL 192 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHHHHH
Confidence 458999999999999999987 246777788887775443333
No 339
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.35 E-value=17 Score=32.92 Aligned_cols=82 Identities=9% Similarity=0.004 Sum_probs=49.4
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|-.|+++ ++.+..++..+. ...+|+.++.+.+..+.+++..+...-.++.++..|+.+.... ...+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 367889889874 788888887653 3357887765432222333333332223577888888764311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+++|.++..+.
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 67899988663
No 340
>PRK06196 oxidoreductase; Provisional
Probab=80.31 E-value=16 Score=34.02 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=51.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.+||=.| |+|+.+.+++..+. .+.+|+.++.++..++.+.+.+. ++.++..|+.+.... ...++
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777666 56778888887653 33589999999887766554442 367788888765311 01135
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68999998753
No 341
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=80.25 E-value=1.7 Score=39.47 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=48.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-+||++.+|-|+.-..+-..--+..-|-|+|++.-+-+.-..|- +-+-+ -..|...+...+-..-.+|.+++-||
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~---h~~L~--k~~~I~~lt~kefd~l~~~m~lMSPp 78 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY---HSNLV--KTRNIQSLTVKEFDKLQANMLLMSPP 78 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc---ccchh--hccccceeeHhhhhhcccceEeeCCC
Confidence 37899999999865544433224456889999987766655551 10001 11111111111000135889999999
Q ss_pred CCCccccCcccC
Q 019692 219 CSGSGTAAERLD 230 (337)
Q Consensus 219 CSg~G~~~~~~d 230 (337)
|--.-.+.+..|
T Consensus 79 CQPfTRiG~q~D 90 (338)
T KOG0919|consen 79 CQPFTRIGLQRD 90 (338)
T ss_pred CCchhhhccccc
Confidence 975544433333
No 342
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.10 E-value=38 Score=30.06 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=51.4
Q ss_pred CeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCCCccEEEEC
Q 019692 139 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYSEVRAILLD 216 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~~fD~IlvD 216 (337)
.+||=.| |+|+.+..+++.+. .+.+|++++.++.....+.+..+..+. ++.++..|..+...... .....|.|+.+
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 3566555 46777887776653 346899999988877777776666554 47888888766431110 01368999986
Q ss_pred CC
Q 019692 217 PS 218 (337)
Q Consensus 217 pP 218 (337)
+.
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
No 343
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.96 E-value=26 Score=30.61 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=52.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||=.| |+|+.+..+++.+. .+..|+.++.++...+.....++..+. ++.++..|..+.... ...+..
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45777666 47888888877653 334799999998887776666665553 477888888654211 011245
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+.-+.
T Consensus 83 id~vi~~ag 91 (246)
T PRK05653 83 LDILVNNAG 91 (246)
T ss_pred CCEEEECCC
Confidence 788887554
No 344
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.93 E-value=4.4 Score=37.48 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=38.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
-.+|+.|||-.+|+|....+. ..+ +...+++|+++.-++.+.+++...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa-~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAA-KNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHHH-HHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 468999999999999655433 333 357899999999999999998865
No 345
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.92 E-value=39 Score=31.06 Aligned_cols=145 Identities=18% Similarity=0.144 Sum_probs=86.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHH------HHHHH---HHHhCCCcEEEEeccCCCCCCC-CC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVR------RLKDT---IKLSGAANIEVLHGDFLNLDPK-DP 205 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~------~l~~~---~~~~g~~~v~~~~~D~~~~~~~-~~ 205 (337)
...+||-+|=|-=.++..++...+ ..+.|+|...+..-.+ .++.| ++++|.. .+...|+..+... +-
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEecccc
Confidence 456888888888778888888765 4566777666544411 23444 4556643 2333455544321 12
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C-cEEEEEcCCCCcc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V-ERVVYSTCSIHQV 283 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~-G~lvYsTCS~~~~ 283 (337)
....||.|+.+=|-+|.|.. +.- +..-+....++-+..|+.|-++++ . |.|+-+--+..|-
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~-~e~----------------d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~ 196 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIK-FEQ----------------DRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPF 196 (282)
T ss_pred cccccceEEEcCCCCCCCcc-ccc----------------chHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCC
Confidence 24689999999999999964 111 233333466677788899988887 4 7666543222332
Q ss_pred cCHHHHHHHhchhcCCCcEEe
Q 019692 284 ENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 284 ENe~vv~~~l~~~~~~~~~~~ 304 (337)
|...++.+- ...|+++.
T Consensus 197 -~~W~ik~La---k~~gl~L~ 213 (282)
T KOG4174|consen 197 -NPWNIKFLA---KEFGLTLL 213 (282)
T ss_pred -chhhhhHhh---hhccccch
Confidence 345555432 34455553
No 346
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.92 E-value=16 Score=32.39 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCC-EEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKG-KIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g-~V~a-vD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|.+||=.| |+|+.+.+++..+...| +|+. .+.+....+.+.+.++..+ .++.++..|..+...- ...++
T Consensus 4 ~~~vlItG-a~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTG-SSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55677555 56888888887764433 6665 4667777766666666555 3477888887664310 01124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.|+..+.
T Consensus 82 ~id~vi~~ag 91 (250)
T PRK08063 82 RLDVFVNNAA 91 (250)
T ss_pred CCCEEEECCC
Confidence 6899998765
No 347
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=79.58 E-value=38 Score=30.11 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+..+|=.| |+|+.+.+++..+.. +.+|+.++.++..+..+.+.++..+. .+.++..|..+.... ...++.
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 56777666 556778887776533 35899999998888877777765542 466777887654311 011356
Q ss_pred ccEEEECCCC
Q 019692 210 VRAILLDPSC 219 (337)
Q Consensus 210 fD~IlvDpPC 219 (337)
+|.|+..+..
T Consensus 87 id~vi~~ag~ 96 (254)
T PRK08085 87 IDVLINNAGI 96 (254)
T ss_pred CCEEEECCCc
Confidence 8999987654
No 348
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.44 E-value=3.3 Score=31.97 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=36.5
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|| ++||.|..|..++.. +++.+++.|++ +++...+..++.... ..+|+|++-|.
T Consensus 5 ~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~-~~v~a~~~~~~~~~~---~~~Dvill~pq 59 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP-VKIAAGSYGAAGEKL---DDADVVLLAPQ 59 (95)
T ss_pred EEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc-EEEEEecHHHHHhhc---CCCCEEEECch
Confidence 556 788999776655443 46667778875 677776665554322 45899998665
No 349
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=79.31 E-value=2.9 Score=32.25 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=35.3
Q ss_pred ecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 144 ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 144 l~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
++||.|..|..+++ .+++.++..|++ +++...+..++... ...+|+|++-|-
T Consensus 4 ~~Cg~G~sTS~~~~-------------------ki~~~~~~~~~~-~~v~~~~~~~~~~~---~~~~Diil~~Pq 55 (96)
T cd05564 4 LVCSAGMSTSILVK-------------------KMKKAAEKRGID-AEIEAVPESELEEY---IDDADVVLLGPQ 55 (96)
T ss_pred EEcCCCchHHHHHH-------------------HHHHHHHHCCCc-eEEEEecHHHHHHh---cCCCCEEEEChh
Confidence 68899987765544 356777788875 77777776655422 246899987543
No 350
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.09 E-value=13 Score=35.03 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=33.3
Q ss_pred hCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 133 LAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
...++|++||=.|+|+=+ .+.++|+.+ +...|++++.++++.+.+ +.+|..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~----~~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALA----KSLGAM 207 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 456789999888764433 345566655 333589999999887765 345654
No 351
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=78.99 E-value=3.9 Score=35.91 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=52.7
Q ss_pred EEEechhhHHHHHHh-CCCCCCeEEeecCCchhHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 119 VFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l-~~~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
-.+|.++-++..+.+ --...+.|++.|+.-||.++..|..+ +...+|+++|+|-..+..+... ++.|.++.
T Consensus 50 p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~e 124 (237)
T COG3510 50 PCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIE 124 (237)
T ss_pred cccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEe
Confidence 344444444443322 22346799999999999999988865 3346999999986655433222 56799999
Q ss_pred ccCCCCC
Q 019692 195 GDFLNLD 201 (337)
Q Consensus 195 ~D~~~~~ 201 (337)
++..+..
T Consensus 125 gss~dpa 131 (237)
T COG3510 125 GSSTDPA 131 (237)
T ss_pred CCCCCHH
Confidence 9887653
No 352
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=78.66 E-value=9 Score=35.05 Aligned_cols=87 Identities=21% Similarity=0.116 Sum_probs=47.9
Q ss_pred hHHHHHHhCCC-CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----C-cEEEEeccCC
Q 019692 126 SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-----A-NIEVLHGDFL 198 (337)
Q Consensus 126 s~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-----~-~v~~~~~D~~ 198 (337)
+-+.+..+..+ ....||++|+|+|--++.+|... ...|..-|. +..+..++.+...+++ . .|.+..-+..
T Consensus 74 ~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg 150 (248)
T KOG2793|consen 74 SELTATLIGFKTKYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWG 150 (248)
T ss_pred chhhhccccccccceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecC
Confidence 44444444444 45679999999997777666653 356666554 4445555555443322 1 3444444444
Q ss_pred CCCCCCCCCCC-ccEEEE
Q 019692 199 NLDPKDPAYSE-VRAILL 215 (337)
Q Consensus 199 ~~~~~~~~~~~-fD~Ilv 215 (337)
+.+........ ||+|+.
T Consensus 151 ~~~~~~~~~~~~~Dlila 168 (248)
T KOG2793|consen 151 NALDVSFRLPNPFDLILA 168 (248)
T ss_pred CcccHhhccCCcccEEEE
Confidence 43322222234 788874
No 353
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.25 E-value=7.8 Score=37.80 Aligned_cols=66 Identities=27% Similarity=0.317 Sum_probs=44.7
Q ss_pred hcCeEEEec-hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 115 VNGCVFLQG-KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 115 ~~G~~~~Qd-~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
..+++|-|- +....-..+|++.|+++||=+++|--+ ++.+ +..+..+|+|||+|+..+..++=.+.
T Consensus 12 f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N-~L~y--L~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 12 FRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCN-ALDY--LLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred ccceeeccccCCcHHHHHHhCCCCCCeEEEEccCCch-HHHH--HhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 345555542 445556678899999999988766554 4444 33345899999999988776654443
No 354
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=78.10 E-value=5.7 Score=36.28 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=35.9
Q ss_pred cCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCCCCCCccEEEECCCC
Q 019692 145 CSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-----LDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 145 ~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~-----~~~~~~~~~~fD~IlvDpPC 219 (337)
...||+=. .++.+++...+++.+|+.+.-.+.+++++.. -.+|.+.+.|... +++. .+=-+|++|||.
T Consensus 63 ~~YPGSP~-ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP~----~rRglVLIDPpY 135 (245)
T PF04378_consen 63 RFYPGSPA-IAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPPP----ERRGLVLIDPPY 135 (245)
T ss_dssp -EEE-HHH-HHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S-T----TS-EEEEE----
T ss_pred CcCCCCHH-HHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCCC----CCCeEEEECCCC
Confidence 34455322 2344456678999999999999999999875 3579999999765 2322 223589999993
No 355
>PRK08251 short chain dehydrogenase; Provisional
Probab=77.94 E-value=40 Score=29.81 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
+.++|-.| |+|+.+.+++..+. ...+|+.++.++..++.+...+.... -.++.++..|..+.... ...++
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677566 57788888877653 23589999999998888777665432 13588888998765311 11235
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
..|.|+..+-.
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 356
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=77.86 E-value=10 Score=36.14 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=34.6
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..+++|++||=.|+|+ |..+.++|+.. +..+|+++|.++.+.+.++ ++|.+
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 4567899999887643 22345566654 2236999999999887764 45764
No 357
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=77.74 E-value=16 Score=34.79 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=47.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHH-HHHHHHHh---CCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRR-LKDTIKLS---GAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~-l~~~~~~~---g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+||=. -|+|..+.+++..+... -+|+++|........ ........ ...++.++.+|..+...-......+|.
T Consensus 15 ~~~vlVt-GatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWLIT-GVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEEEE-CCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 4677744 48999999988877433 489999985432211 11111111 124588899998764311111235788
Q ss_pred EEECCCC
Q 019692 213 ILLDPSC 219 (337)
Q Consensus 213 IlvDpPC 219 (337)
|+-=+-.
T Consensus 94 ViHlAa~ 100 (348)
T PRK15181 94 VLHQAAL 100 (348)
T ss_pred EEECccc
Confidence 8875543
No 358
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=77.69 E-value=5.4 Score=36.70 Aligned_cols=64 Identities=27% Similarity=0.427 Sum_probs=42.7
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN 199 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~ 199 (337)
.+-.++||+.|| +.++.||.++.+.++++- ...+++.-.+.+..+.+++| |+.. |.....|+.+
T Consensus 140 e~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~ 205 (336)
T KOG1197|consen 140 EAYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVD 205 (336)
T ss_pred HhcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHH
Confidence 334689999998 667777777766666532 24778887788887777665 6543 5555556543
No 359
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=77.62 E-value=15 Score=34.76 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC--CCCccEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA--YSEVRAIL 214 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~--~~~fD~Il 214 (337)
|.+||-.| |+|+.+.+++..+- .+.+|++++.+........+.+. .+ .++.++.+|..+...-... ...+|.|+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 56777555 77888888888663 33589999987654332222221 11 2477788888764311100 12468888
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 81 h~A~ 84 (349)
T TIGR02622 81 HLAA 84 (349)
T ss_pred ECCc
Confidence 7654
No 360
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.54 E-value=42 Score=29.49 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.++|-.| |+|+.+.+++..+ ..+.+|+.++.++...+...+.++..+ .++.++..|..+...- ...++.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777777 5778888887754 334689999999888777666665554 3588888888664311 011246
Q ss_pred ccEEEECCCC
Q 019692 210 VRAILLDPSC 219 (337)
Q Consensus 210 fD~IlvDpPC 219 (337)
.|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999987653
No 361
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=77.44 E-value=4.1 Score=32.04 Aligned_cols=57 Identities=23% Similarity=0.175 Sum_probs=35.5
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|| ++||.|..|..++.. +++.++..|++ +.+...+..++..... ...+|+|++-|-
T Consensus 3 kIL-lvCg~G~STSlla~k-------------------~k~~~~e~gi~-~~i~a~~~~e~~~~~~-~~~~DvIll~PQ 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK-------------------TTEYLKEQGKD-IEVDAITATEGEKAIA-AAEYDLYLVSPQ 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH-------------------HHHHHHHCCCc-eEEEEecHHHHHHhhc-cCCCCEEEEChH
Confidence 355 789999877755553 45666777875 6666666555432211 135899987543
No 362
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.31 E-value=3.7 Score=32.16 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEECCC
Q 019692 146 SAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILLDPS 218 (337)
Q Consensus 146 aG~G~kt~~la~~~~~~g-~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~IlvDpP 218 (337)
||.|..+..+++.+...+ .|+.+|.+++.++.+++. | +.++.+|+.+...- .....+.|.|++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhhhHHhhcCccccCEEEEccC
Confidence 677788888888776666 899999999998776543 3 56888998765311 111356888887554
No 363
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.75 E-value=36 Score=30.02 Aligned_cols=80 Identities=8% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
+|.++|-.|+ +|+.+..++..+. .+.+|+.++.++..++.+.+.++..+. ++.++..|..+.... ....+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3678886664 5667777776543 335899999999888877777766553 477788887653211 01124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.|+..+.
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899998664
No 364
>PLN02427 UDP-apiose/xylose synthase
Probab=76.71 E-value=15 Score=35.50 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=47.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~--g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..+|| +.-|+|..+.++++.+... .+|+++|.+......+.......-..+++++.+|..+...-......+|.|+-
T Consensus 14 ~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH 92 (386)
T PLN02427 14 PLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN 92 (386)
T ss_pred CcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence 45678 5668999999998876433 48999998765543322110000013588999998764321111235788886
Q ss_pred C
Q 019692 216 D 216 (337)
Q Consensus 216 D 216 (337)
=
T Consensus 93 l 93 (386)
T PLN02427 93 L 93 (386)
T ss_pred c
Confidence 3
No 365
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.06 E-value=27 Score=31.14 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=54.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.++| +..|+|+.+.+++..+. .+..|+.++.++...+.+.+.++..+. ++.++..|..+..... ...+.
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 55566778877777553 335899999999888888777766553 4778888887643210 01245
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
.|.|+..+-..
T Consensus 85 ~d~vi~~ag~~ 95 (262)
T PRK13394 85 VDILVSNAGIQ 95 (262)
T ss_pred CCEEEECCccC
Confidence 89998866543
No 366
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=76.03 E-value=5.7 Score=35.69 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=48.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
..-..+.|+++|-||||.|-.+... +..++..+|++.+.+.-++...+... ....+.++|+..+
T Consensus 47 ~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 47 GNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred cccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 3345789999999999999988764 34688999999988887776665332 3477778887654
No 367
>PRK07832 short chain dehydrogenase; Provisional
Probab=75.69 E-value=18 Score=32.82 Aligned_cols=77 Identities=9% Similarity=0.033 Sum_probs=47.6
Q ss_pred EEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCccE
Q 019692 141 VLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVRA 212 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD~ 212 (337)
+|=.| |+|+.+..+++.+. .+..|+.++.+++.++.+.+.+...+...+.++..|..+.... ...++.+|.
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV 81 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 44344 56677777766543 3458999999988887777766655544455567777653210 011346899
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|+..+.
T Consensus 82 lv~~ag 87 (272)
T PRK07832 82 VMNIAG 87 (272)
T ss_pred EEECCC
Confidence 987653
No 368
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.64 E-value=60 Score=29.05 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|..+|=.|+ +|+.+.+++..+ ..+.+|+.++.+++.++.+.+.+....- .++.++..|..+.... ...++
T Consensus 8 ~k~~lItGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGG-SSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 667777774 455677777655 3346899999999888877766654421 3577888888765311 11235
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++..+.
T Consensus 87 ~id~li~~Ag 96 (265)
T PRK07062 87 GVDMLVNNAG 96 (265)
T ss_pred CCCEEEECCC
Confidence 6899988664
No 369
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=74.72 E-value=11 Score=36.69 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=93.5
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHH-------HHHHHHhCC--CcEEEEeccCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL-------KDTIKLSGA--ANIEVLHGDFL 198 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l-------~~~~~~~g~--~~v~~~~~D~~ 198 (337)
-...-+.+.+++...|+|+|.|......|...+ ..+=+|+++.....+.+ ++.++-+|- ..+..+++++.
T Consensus 183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 335567889999999999999999888887743 34567777754333322 223334454 23888888887
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 278 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTC 278 (337)
+......-....++|+++=- +- +++...++ .+||.. +++|.=+-|+-
T Consensus 262 ~~~~v~eI~~eatvi~vNN~-------~F------------------dp~L~lr~----~eil~~----ck~gtrIiS~~ 308 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNV-------AF------------------DPELKLRS----KEILQK----CKDGTRIISSK 308 (419)
T ss_pred CHHHHHHHhhcceEEEEecc-------cC------------------CHHHHHhh----HHHHhh----CCCcceEeccc
Confidence 65422111124567776422 10 12211111 144444 46687777877
Q ss_pred CCCc-----ccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhc
Q 019692 279 SIHQ-----VENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF 317 (337)
Q Consensus 279 S~~~-----~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (337)
++.+ +-|-..+..|+.......++++..--.|+..+..+
T Consensus 309 ~L~~r~rs~es~~~~~~df~~it~t~~l~l~e~nvSWT~~~v~f 352 (419)
T KOG3924|consen 309 PLVPRPRSQESTSRRVSDFVAITKTRLLKLVENNVSWTGSKVPF 352 (419)
T ss_pred cccccccchhHHHHHHHHHHhhccchhhhhhhcccccccCccce
Confidence 7777 55677778887654455566666566787766544
No 370
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.69 E-value=33 Score=30.74 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=48.4
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|-.|++. ++.+..++..+. .+.+|+.++.+.+..+. +++..-.++.++..|+.+.... ...+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 367888888875 678887777653 34588888877432222 2222223477888888764311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+++|.++.++-
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 67899998764
No 371
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.31 E-value=12 Score=33.20 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---------C
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---------D 204 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~---------~ 204 (337)
..++.+||=.| |+|+.+..++..+.. +.+|++++.+...++.+.+.++..+..++.++..|....... .
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 34577888777 567788777765532 348999999998888887777776655677777776532211 0
Q ss_pred CCCCCccEEEECCC
Q 019692 205 PAYSEVRAILLDPS 218 (337)
Q Consensus 205 ~~~~~fD~IlvDpP 218 (337)
..+.++|.|+..+.
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 11246899998764
No 372
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=73.77 E-value=13 Score=34.95 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
..+.||=+|-|-|+..-..+.. ..-+.+.-+|++...++..++.+..+ |. +.|.+..+|...+-.... .++||+
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-ENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-cCCceE
Confidence 4578999999999976555444 22367999999999999888877765 33 359999999776654432 478999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
|++|-. .|. ....+.+|+....-.+..++++.++ |+ ..|+..+-.++
T Consensus 199 ii~dss---------dpv-------------------gpa~~lf~~~~~~~v~~aLk~dgv~---~~--q~ec~wl~~~~ 245 (337)
T KOG1562|consen 199 IITDSS---------DPV-------------------GPACALFQKPYFGLVLDALKGDGVV---CT--QGECMWLHLDY 245 (337)
T ss_pred EEEecC---------Ccc-------------------chHHHHHHHHHHHHHHHhhCCCcEE---EE--ecceehHHHHH
Confidence 999854 221 1234556666666666666774443 33 44776666666
Q ss_pred hch
Q 019692 293 LPI 295 (337)
Q Consensus 293 l~~ 295 (337)
++.
T Consensus 246 i~e 248 (337)
T KOG1562|consen 246 IKE 248 (337)
T ss_pred HHH
Confidence 653
No 373
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=72.68 E-value=71 Score=28.54 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=51.0
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCcc
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVR 211 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD 211 (337)
+||=.|++ |+.+..++..+. .+.+|+.++.++..++.+.+.++..+ ++.++..|..+.... ...++.+|
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 46656654 567777777653 34689999999988888777776544 577888887654211 01235789
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
.++..+.
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9998764
No 374
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=71.82 E-value=8.9 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=34.4
Q ss_pred ecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 144 ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 144 l~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
++||+|.-|..++. ..+++.++..|++ +++.+.+..++... ...+|+|+.-+|
T Consensus 7 vvCgsG~~TS~m~~------------------~ki~~~l~~~gi~-~~v~~~~~~e~~~~---~~~~D~iv~t~~ 59 (94)
T PRK10310 7 VACGGAVATSTMAA------------------EEIKELCQSHNIP-VELIQCRVNEIETY---MDGVHLICTTAR 59 (94)
T ss_pred EECCCchhHHHHHH------------------HHHHHHHHHCCCe-EEEEEecHHHHhhh---cCCCCEEEECCc
Confidence 67899976655532 2356666777774 67777776665432 145798988776
No 375
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=71.44 E-value=6.1 Score=35.72 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~ 179 (337)
+..+++|.+||+|..+..+.. ...+|+..|+++..+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHH
Confidence 688999999999988876655 3478999999997665444
No 376
>PRK07041 short chain dehydrogenase; Provisional
Probab=70.97 E-value=61 Score=28.20 Aligned_cols=71 Identities=8% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCccEEEECCC
Q 019692 146 SAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVRAILLDPS 218 (337)
Q Consensus 146 aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD~IlvDpP 218 (337)
-|+|+.+..++..+ ..+.+|+.++.++..++.....++. + .++.++..|..+.... ....+.+|.++..+.
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag 78 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDITDEAAVDAFFAEAGPFDHVVITAA 78 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 46677777777655 3346899999998777766555542 3 3477888887664311 011246798988664
No 377
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=70.72 E-value=15 Score=33.76 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=62.2
Q ss_pred EEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc-cEEEECCC
Q 019692 141 VLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV-RAILLDPS 218 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f-D~IlvDpP 218 (337)
||=.|+ +|..+.+++..+.. +..|+++|.+........ .++.++.+|..+........... |.|+..+.
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccc--------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 665665 99999999887754 469999998766554333 34667777766543221111233 88887665
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 276 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYs 276 (337)
-+....... + ...+-.......-..+|+.|.+ .....+||+
T Consensus 74 ~~~~~~~~~---------------~-~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ 114 (314)
T COG0451 74 QSSVPDSNA---------------S-DPAEFLDVNVDGTLNLLEAARA-AGVKRFVFA 114 (314)
T ss_pred cCchhhhhh---------------h-CHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEe
Confidence 332211000 0 0011233444556677777766 233677773
No 378
>PRK05993 short chain dehydrogenase; Provisional
Probab=70.70 E-value=33 Score=31.18 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~--------~~~~~ 208 (337)
+.+||=.|+ +|+.+.+++..+. .+.+|++++.+++.++.+.. . .+.++..|..+.... ....+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E---GLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C---CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456776664 6778888887653 34589999999887765442 2 356777887664210 00014
Q ss_pred CccEEEECC
Q 019692 209 EVRAILLDP 217 (337)
Q Consensus 209 ~fD~IlvDp 217 (337)
..|.|+..+
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 679998865
No 379
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.69 E-value=9.3 Score=35.22 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcC----CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLD 201 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~----~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~ 201 (337)
.+...++|+|||.|..+.+++..+. +...++.||....+.+.=.. +.... -..+.-+..|..++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEeeccc
Confidence 5677999999999999999999874 34689999997777643322 22222 124666677777665
No 380
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=6.2 Score=34.18 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=52.2
Q ss_pred cCeEEEechhhHHHHHHhCC-CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 116 NGCVFLQGKASSMVAAALAP-KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~-~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
.-.++.++-+..+++..+.. ..|.+|--+-|-+=..-.-.-..-.+.-.|+-+|.+.+ .+.+| -+++.
T Consensus 51 sqfwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg---~eFvf 119 (217)
T KOG3350|consen 51 SQFWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKR--------FELYG---TEFVF 119 (217)
T ss_pred hhhhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhh--------HHhcc---ceeEE
Confidence 34567788888888777653 44656655544443211111111123457888887743 34455 34666
Q ss_pred ccCCCC---CCCCCCCCCccEEEECCCCCC
Q 019692 195 GDFLNL---DPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 195 ~D~~~~---~~~~~~~~~fD~IlvDpPCSg 221 (337)
-|.... +... ...||+|+.|||.-+
T Consensus 120 YDyN~p~dlp~~l--k~~fdiivaDPPfL~ 147 (217)
T KOG3350|consen 120 YDYNCPLDLPDEL--KAHFDIIVADPPFLS 147 (217)
T ss_pred eccCCCCCCHHHH--HhcccEEEeCCcccc
Confidence 564332 2222 257999999999544
No 381
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.65 E-value=48 Score=30.24 Aligned_cols=80 Identities=10% Similarity=0.171 Sum_probs=53.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.++|=.|+ +|+.+.+++..+. .+.+|+.++.+...++.+.+.++..|. ++.++..|+.+.... ...++
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3667776665 5667888777653 335899999998888877766665553 477788888764311 01135
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.++..+.
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 382
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.64 E-value=52 Score=29.88 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=47.0
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|=.|++. ++.+..++..+. .+..|+.++.+. .++...+.+.... ..+.++..|+.+.... ...+
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 367888888886 377777777653 335788788763 2222222222211 2355677888764311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+++|.++.++.
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 67899998774
No 383
>PRK05599 hypothetical protein; Provisional
Probab=70.26 E-value=17 Score=32.56 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=54.0
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCccE
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVRA 212 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD~ 212 (337)
.+|-.|+ +++.+..++..+....+|+.++.+++.++.+.+.++..|-..+.++..|+.+.... ...++..|.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 3565555 45678888876655678999999999998888888776644577888888764321 112357899
Q ss_pred EEECC
Q 019692 213 ILLDP 217 (337)
Q Consensus 213 IlvDp 217 (337)
++.++
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 99854
No 384
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.91 E-value=12 Score=33.79 Aligned_cols=80 Identities=11% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|-.|+++ ++.+..++..+. ...+|+.++.+.+..+.+++..+..+ .+.++..|..+.... ...+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 467899999887 488888777653 34588888888654444444433333 345677787654311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+.+|+++.++-
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 67899998764
No 385
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.88 E-value=52 Score=29.66 Aligned_cols=80 Identities=18% Similarity=0.051 Sum_probs=45.4
Q ss_pred CCCeEEeecCCch-hHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPG-NKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G-~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|=.|++.| +.+..++..+. ...+|+..+.+....+.+++..+..|. ..++..|+.+.... ...+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567887888765 57777766553 335788888774332333333333342 23566787764311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+++|.++.++.
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 67898887553
No 386
>PRK09186 flagellin modification protein A; Provisional
Probab=69.77 E-value=60 Score=28.74 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=52.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
+.+||=.|+ +|+.+.+++..+. .+.+|+.++.+++.++.+.+.+.. .+-..+.++..|..+..... ..++
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567775664 5778888887663 335899999998888777666643 23344667788887643110 1124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.|+..+.
T Consensus 83 ~id~vi~~A~ 92 (256)
T PRK09186 83 KIDGAVNCAY 92 (256)
T ss_pred CccEEEECCc
Confidence 5899998763
No 387
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.48 E-value=18 Score=33.80 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|..|+=.||.+| ++.++|..+ ..+.+++-+-...++++...+.+++.+..+ +.++..|..+..... ..+
T Consensus 11 ~~kvVvITGASsG-IG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSG-IGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 3778888888887 455555433 234567778889999999988888887666 999999998765321 236
Q ss_pred CCccEEEECCCCCC
Q 019692 208 SEVRAILLDPSCSG 221 (337)
Q Consensus 208 ~~fD~IlvDpPCSg 221 (337)
+..|+.+.++--+-
T Consensus 90 g~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL 103 (282)
T ss_pred CCCCEEEecCcccc
Confidence 78999999987555
No 388
>PRK06182 short chain dehydrogenase; Validated
Probab=69.48 E-value=35 Score=30.82 Aligned_cols=73 Identities=8% Similarity=0.018 Sum_probs=46.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+..|+=.| |+|+.+.+++..+. .+.+|++++.+++.++.+.. . ++.++.+|..+..... ..++.
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45677555 56778888888653 34589999999877654321 2 3667788877643110 01246
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.++..+.
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899998654
No 389
>PRK08267 short chain dehydrogenase; Provisional
Probab=69.28 E-value=54 Score=29.23 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=48.7
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CC-CCCc
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PA-YSEV 210 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~-~~~f 210 (337)
++|-.| |+|+.+..++..+. ...+|+.++.+...++.+.+.+. + .++.++..|+.+...-. .. .+++
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 455555 55777887777553 33589999999888777655543 2 35888899987643110 00 3568
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|.|+..+.
T Consensus 79 d~vi~~ag 86 (260)
T PRK08267 79 DVLFNNAG 86 (260)
T ss_pred CEEEECCC
Confidence 99998654
No 390
>PRK12937 short chain dehydrogenase; Provisional
Probab=69.24 E-value=39 Score=29.68 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=48.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~-~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
+.+||=.|+ +|+.+.+++..+... .+|+.+.. ++...+.+.+.+...+ .++.++..|+.+.... ...++
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 556665554 677888888766433 46666554 3445555666665555 3588888888764311 01124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.|+..+.
T Consensus 83 ~id~vi~~ag 92 (245)
T PRK12937 83 RIDVLVNNAG 92 (245)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 391
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=69.20 E-value=4.4 Score=36.12 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred CccEEEECCCCCCcccc
Q 019692 209 EVRAILLDPSCSGSGTA 225 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~ 225 (337)
..+.+++|=||||+-+.
T Consensus 151 ~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 151 DPSILVLDEPTSGLDIR 167 (245)
T ss_pred CCCeEEEcCCCCCccHH
Confidence 46899999999998764
No 392
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=69.14 E-value=49 Score=32.31 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 147 APGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 147 G~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
|.|+.++.+|..+..+..|+++|+++++++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 6666666666555434689999999999998876
No 393
>PRK08324 short chain dehydrogenase; Validated
Probab=69.13 E-value=20 Score=37.67 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=52.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
+|..||=.|+ +|+.+..++..+. .+.+|+.+|.+...++.+.+.+... .++.++..|..+.... ...++
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4677776654 5667777776553 3358999999998877666554432 3578888887654311 01134
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
.+|.|+..+.-+
T Consensus 498 ~iDvvI~~AG~~ 509 (681)
T PRK08324 498 GVDIVVSNAGIA 509 (681)
T ss_pred CCCEEEECCCCC
Confidence 689999866433
No 394
>PRK07326 short chain dehydrogenase; Provisional
Probab=69.07 E-value=20 Score=31.45 Aligned_cols=77 Identities=10% Similarity=0.115 Sum_probs=51.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+..||-.| |+|+.+..++..+. .+.+|++++.++...+.+.+.+... ..+.++.+|..+...-. ..+..
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56778666 57888888877653 2358999999988877766665432 45778888876542110 01246
Q ss_pred ccEEEECC
Q 019692 210 VRAILLDP 217 (337)
Q Consensus 210 fD~IlvDp 217 (337)
+|.|+..+
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 88888765
No 395
>PRK12746 short chain dehydrogenase; Provisional
Probab=69.01 E-value=30 Score=30.70 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=46.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCC-EEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----------
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKG-KIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD----------- 204 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g-~V~av-D~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~----------- 204 (337)
+.+|+=.| |+|+.+.++++.+...| +|+.+ ..+...++.....+...+ ..+.++..|..+.....
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 45777555 57888999888664334 55443 456655554444443333 24778888887643110
Q ss_pred --CCCCCccEEEECCC
Q 019692 205 --PAYSEVRAILLDPS 218 (337)
Q Consensus 205 --~~~~~fD~IlvDpP 218 (337)
......|.|+..+-
T Consensus 84 ~~~~~~~id~vi~~ag 99 (254)
T PRK12746 84 IRVGTSEIDILVNNAG 99 (254)
T ss_pred cccCCCCccEEEECCC
Confidence 00135899998663
No 396
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.90 E-value=78 Score=28.81 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=48.7
Q ss_pred CCCeEEeecCC-chhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSA-PGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG-~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|=.|++ +++.+..+++.+. .+.+|+.+..+....+.+++..+..| .+..+..|..+.... ...+
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 35678888886 4788888887763 33577777665433344444444444 345677887653311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+..|.++.++-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 67899998774
No 397
>PRK05855 short chain dehydrogenase; Validated
Probab=68.82 E-value=99 Score=31.07 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.++|=.| |+|+.+.+++..+. .+.+|+.++.+...++.+.+.++..|. ++.++..|..+.... ....+.
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 45666555 57778888877653 335899999999888888777776664 588888998765421 011356
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
+|.++..+-..
T Consensus 393 id~lv~~Ag~~ 403 (582)
T PRK05855 393 PDIVVNNAGIG 403 (582)
T ss_pred CcEEEECCccC
Confidence 89999876543
No 398
>PRK08643 acetoin reductase; Validated
Probab=68.81 E-value=84 Score=27.85 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=52.0
Q ss_pred CeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCc
Q 019692 139 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 210 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~f 210 (337)
.++|=. -|+|+.+.++++.+. .+.+|+.++.+...++.+...+...+ .++.++..|..+.... ...++++
T Consensus 3 k~~lIt-Gas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVALVT-GAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 455644 466778888777653 34589999999888888877776655 3577888888764311 0113468
Q ss_pred cEEEECC
Q 019692 211 RAILLDP 217 (337)
Q Consensus 211 D~IlvDp 217 (337)
|.++..+
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9999865
No 399
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.73 E-value=4.4 Score=34.67 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=55.7
Q ss_pred CeEEEechhhHHHHHHhCC---CCCCeEEeecCCchhHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCc
Q 019692 117 GCVFLQGKASSMVAAALAP---KPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDTIKLS---GAAN 189 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~---~~g~~VLDl~aG~G~kt-~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~---g~~~ 189 (337)
|.+-+=..+-.++...|.- -.|.+||++|.|--+.+ +++|.. .+...|.-.|-++..++..++....+ +...
T Consensus 6 gnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts 84 (201)
T KOG3201|consen 6 GNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSLTS 84 (201)
T ss_pred CcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcccccccce
Confidence 4444433333444444431 23788999999866554 444544 45578999999999999888876655 2233
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 190 IEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+.++.-+........ ...+||.|++
T Consensus 85 c~vlrw~~~~aqsq~-eq~tFDiIla 109 (201)
T KOG3201|consen 85 CCVLRWLIWGAQSQQ-EQHTFDIILA 109 (201)
T ss_pred ehhhHHHHhhhHHHH-hhCcccEEEe
Confidence 333332222111111 1247999985
No 400
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.57 E-value=13 Score=35.29 Aligned_cols=47 Identities=15% Similarity=-0.031 Sum_probs=33.8
Q ss_pred CCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 134 APKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
.+++|++||=.|||+=|. +.++++.+.+..+|+++|.++++++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 357899999998765543 34556543334689999999999888764
No 401
>PRK06949 short chain dehydrogenase; Provisional
Probab=68.55 E-value=26 Score=31.19 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=54.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.+||-.| |+|+.+.+++..+.. +.+|++++.+++.++.+...++..+. ++.++..|+.+.... ...++
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 367778666 677788888876643 34899999999988888777665442 477888887653210 01124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.|+..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 6899998665
No 402
>PRK06198 short chain dehydrogenase; Provisional
Probab=68.48 E-value=37 Score=30.23 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~-V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.+.+|+-.| |+|+.+.+++..+. .+.+ |+.++.+..........+...+ ..+.++..|..+..... ..+
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 356777666 56678888877653 2345 9999998877766555554444 24777888887643110 012
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
+.+|.|+..+-.
T Consensus 83 g~id~li~~ag~ 94 (260)
T PRK06198 83 GRLDALVNAAGL 94 (260)
T ss_pred CCCCEEEECCCc
Confidence 458999876643
No 403
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.47 E-value=30 Score=30.50 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=52.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.++|-.| |+|+.+..++..+. .+.+|++++.++...+.+.+.++..+ .++.++.+|..+.... ...+++
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677666 57888888877653 33589999999888877777666544 3577888998764311 011245
Q ss_pred ccEEEECC
Q 019692 210 VRAILLDP 217 (337)
Q Consensus 210 fD~IlvDp 217 (337)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 79998754
No 404
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.45 E-value=71 Score=28.55 Aligned_cols=83 Identities=7% Similarity=0.071 Sum_probs=50.8
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCC-----------HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELN-----------KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~-----------~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 203 (337)
.|.+||=.|++. ++.+.+++..+. .+.+|+..+.+ ......+.+.++..|. ++.++..|+.+....
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence 477888888874 577777776553 23477766421 2333445566666664 477888887654311
Q ss_pred -------CCCCCCccEEEECCCCC
Q 019692 204 -------DPAYSEVRAILLDPSCS 220 (337)
Q Consensus 204 -------~~~~~~fD~IlvDpPCS 220 (337)
...++..|.|+.++.+.
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCC
Confidence 01135689999988654
No 405
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=68.42 E-value=65 Score=30.77 Aligned_cols=121 Identities=23% Similarity=0.277 Sum_probs=70.9
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+..|+ +.-|+|..+.++.+.+ ..+-+|.|.=.+++--+......+.-|.+ +..++.+|..+...-+..+...|.||.
T Consensus 6 ~~~Vc-VTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 6 GKKVC-VTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CcEEE-EeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 34444 5668999999988755 44458988888777633322222222333 488999998887644433456788886
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsT 277 (337)
-+. ..+... .+ ...+-+.--.+--..+|+.+.+.....++||++
T Consensus 85 ~As---------p~~~~~--------~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 85 TAS---------PVDFDL--------ED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred eCc---------cCCCCC--------CC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 543 111100 00 011233334455677788877765457888874
No 406
>PRK12744 short chain dehydrogenase; Provisional
Probab=68.18 E-value=82 Score=28.02 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=46.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCC----HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELN----KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DP 205 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~----~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~ 205 (337)
+.+||=.| |+|+.+..+++.+... .+|+.++.+ ....+.+.+.++..+. ++.++..|..+.... ..
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHHH
Confidence 56777666 5777888888776433 466666542 3444444455554443 477888898764311 01
Q ss_pred CCCCccEEEECC
Q 019692 206 AYSEVRAILLDP 217 (337)
Q Consensus 206 ~~~~fD~IlvDp 217 (337)
..+.+|.++..+
T Consensus 86 ~~~~id~li~~a 97 (257)
T PRK12744 86 AFGRPDIAINTV 97 (257)
T ss_pred hhCCCCEEEECC
Confidence 134689998765
No 407
>PRK06940 short chain dehydrogenase; Provisional
Probab=67.99 E-value=28 Score=31.80 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=52.2
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CCCCCCccEE
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DPAYSEVRAI 213 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~~~~~fD~I 213 (337)
.+|=.|+ |+.+.++++.+..+.+|+.++.+...++.+.+.++..|. ++.++..|+.+.... ...++.+|.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 579999988876557899999998887777666665443 477788888664311 0113568999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
+..+-
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 98764
No 408
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.50 E-value=21 Score=33.82 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=36.4
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..+++|++||=.|+|+ |..+.++|+.++ .+|+++|.++++++.++ .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCc
Confidence 4567899999998865 445566677653 47999999999887664 35654
No 409
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=67.40 E-value=29 Score=32.43 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=41.8
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--CCCCccEEEEC
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--AYSEVRAILLD 216 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~~~~fD~IlvD 216 (337)
+|| +--|+|..+.++++.+. .+.+|++++...+........+...+-.++.++.+|..+...... ....+|.|+.-
T Consensus 2 ~vl-VtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 2 RVL-VTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred eEE-EECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 344 33467889998888653 335788887532221111112222222346677888765432110 01258999876
Q ss_pred CC
Q 019692 217 PS 218 (337)
Q Consensus 217 pP 218 (337)
+.
T Consensus 81 a~ 82 (338)
T PRK10675 81 AG 82 (338)
T ss_pred Cc
Confidence 54
No 410
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=67.05 E-value=8.1 Score=37.75 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=49.9
Q ss_pred CeEEeecCCchhHHHHHHHHc--CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 139 WKVLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~--~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+||=+|| |+.+..+|..+ ++.+.|+..|.+.+.++.+..... .+++....|+.+.+.-..-...+|+|+.=
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 36778888 56555555543 223799999999988887766532 25888888887764332223457888876
Q ss_pred CC
Q 019692 217 PS 218 (337)
Q Consensus 217 pP 218 (337)
.|
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 66
No 411
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=66.36 E-value=93 Score=27.43 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=51.5
Q ss_pred EEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCccE
Q 019692 141 VLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVRA 212 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD~ 212 (337)
+|=.| |+|+.+.+++..+ ..+.+|+.++.+...++.+.+.+...+. ++.++..|..+...- ...+...|.
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 44445 5677777777655 3345899999998888777766666553 478888887764311 011245799
Q ss_pred EEECCCCCC
Q 019692 213 ILLDPSCSG 221 (337)
Q Consensus 213 IlvDpPCSg 221 (337)
|+..+....
T Consensus 81 vi~~ag~~~ 89 (254)
T TIGR02415 81 MVNNAGVAP 89 (254)
T ss_pred EEECCCcCC
Confidence 998776443
No 412
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.08 E-value=23 Score=32.85 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=26.8
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHH
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
+|.=+|+| ..+..+|..+. ....|+.+|.+++.++.+.++..
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Confidence 34445555 44444444432 23579999999999998876543
No 413
>PRK07831 short chain dehydrogenase; Provisional
Probab=64.98 E-value=34 Score=30.67 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=53.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.+.++|=.|++..+.+..++..+. .+..|+.+|.+...++...+.++. +|..++.++..|..+..... ..+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 366788777542256666665542 235799999998888877777665 45446888888987642110 113
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+.+|.++..+.
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 46899988664
No 414
>PRK06179 short chain dehydrogenase; Provisional
Probab=64.95 E-value=59 Score=29.19 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=45.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+..|+=.| |+|+.+.+++..+. .+.+|++++.++...+. ..+++++.+|..+...- ...++.
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 44677666 56888888887653 34589999988654421 23477888888764311 011356
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.++..+-
T Consensus 74 ~d~li~~ag 82 (270)
T PRK06179 74 IDVLVNNAG 82 (270)
T ss_pred CCEEEECCC
Confidence 899998654
No 415
>PRK08219 short chain dehydrogenase; Provisional
Probab=64.87 E-value=24 Score=30.65 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=46.8
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CCCCCccEEEE
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PAYSEVRAILL 215 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~~~~~fD~Ilv 215 (337)
.++|=+| |+|+.+..++..+....+|++++.+...++.+.+.. ..+.++.+|..+...-. ....+.|.|+.
T Consensus 4 ~~vlVtG-~~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 4 PTALITG-ASRGIGAAIARELAPTHTLLLGGRPAERLDELAAEL-----PGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CEEEEec-CCcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHHh-----ccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 3566555 467788877775433378999999987665554322 24778888887643110 11235889988
Q ss_pred CCCC
Q 019692 216 DPSC 219 (337)
Q Consensus 216 DpPC 219 (337)
-+-.
T Consensus 78 ~ag~ 81 (227)
T PRK08219 78 NAGV 81 (227)
T ss_pred CCCc
Confidence 6543
No 416
>PRK07814 short chain dehydrogenase; Provisional
Probab=64.74 E-value=34 Score=30.79 Aligned_cols=79 Identities=9% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.+.++|=.| |+|+.+.++++.+ ..+.+|+.++.+++.++.+.+.++..+ ..+.++..|..+..... ..++
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888777 5777888887754 334589999999888877777766544 34778888877643210 1124
Q ss_pred CccEEEECC
Q 019692 209 EVRAILLDP 217 (337)
Q Consensus 209 ~fD~IlvDp 217 (337)
++|.|+..+
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689998865
No 417
>CHL00194 ycf39 Ycf39; Provisional
Probab=64.62 E-value=30 Score=32.30 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=43.3
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|| +..|+|..+.+++..+. .+.+|+++..+......+ .. .+++++.+|..+...-...+..+|.|+.
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~---~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE---WGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh---cCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 344 55689999999887653 335899999886543221 11 2478899998764321111346798886
No 418
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=64.59 E-value=33 Score=27.92 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=46.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+||=+|+|--+.+...+-...+..+|+-+..+.++.+.+.+.+ +-.++.++..+- +... ...+|+|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~~--~~~~---~~~~DivI~- 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLED--LEEA---LQEADIVIN- 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGGG--HCHH---HHTESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHHH--HHHH---HhhCCeEEE-
Confidence 5889999998655544433322234467999999988887777666 333465555432 2211 246898887
Q ss_pred CCCCCcc
Q 019692 217 PSCSGSG 223 (337)
Q Consensus 217 pPCSg~G 223 (337)
|+++|
T Consensus 82 --aT~~~ 86 (135)
T PF01488_consen 82 --ATPSG 86 (135)
T ss_dssp ---SSTT
T ss_pred --ecCCC
Confidence 44454
No 419
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=64.52 E-value=99 Score=27.12 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+..+|-.| |+|+.+..++..+.. +..|+.++.+......+...++..+ .++.++..|..+.... ......
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56777666 457778777776533 3489999999888887777776554 3588888888754311 011245
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
.|.|+..+...
T Consensus 81 ~d~vi~~ag~~ 91 (250)
T TIGR03206 81 VDVLVNNAGWD 91 (250)
T ss_pred CCEEEECCCCC
Confidence 79999877543
No 420
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.33 E-value=89 Score=28.08 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=50.8
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCcc
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEVR 211 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~fD 211 (337)
+||-.| |+|+.+..++..+. .+.+|+.++.+...++.+...++..+ .++.++..|+.+...-. ...+.+|
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455444 57777887776653 34589999999888887777776655 34778888887643110 0124689
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
.++..+.
T Consensus 80 ~lI~~ag 86 (270)
T PRK05650 80 VIVNNAG 86 (270)
T ss_pred EEEECCC
Confidence 9988653
No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.18 E-value=60 Score=31.76 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=59.3
Q ss_pred CchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHH------------HHHh-CCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 147 APGNKTVHLAALMK-GKGKIVACELNKERVRRLKDT------------IKLS-GAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 147 G~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~------------~~~~-g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
|.|..+..+|..+. .+..|+++|.++++++.+++. +.+. ...++++. .|..+. ....|+
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~------~~~adv 79 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDA------IRDADV 79 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHH------HhhCCE
Confidence 44444455555442 235899999999998876531 1110 01123322 121111 235789
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
|++-.|..-.. ...+| -+.+... -..+. ..+++|.+|-.+.|+.|...+.+...+
T Consensus 80 vii~vpt~~~~--~~~~d----------------~~~v~~~---~~~i~----~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 80 IIICVPTPLKE--DGSPD----------------LSYVESA---AETIA----KHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEEeCCCCCC--CCCcC----------------hHHHHHH---HHHHH----HhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 99877743210 01111 1122111 12222 233556555555588889889988888
Q ss_pred hch
Q 019692 293 LPI 295 (337)
Q Consensus 293 l~~ 295 (337)
++.
T Consensus 135 ~~~ 137 (411)
T TIGR03026 135 LER 137 (411)
T ss_pred HHh
Confidence 753
No 422
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=64.00 E-value=16 Score=34.36 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=42.6
Q ss_pred hhcCeEEEe-chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 114 IVNGCVFLQ-GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 114 ~~~G~~~~Q-d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
+..|..|.| ++.+..-..++....|.+|.-+|+|--+.-..++. ...+|.+||+++..+..-+-.++.
T Consensus 39 lFsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr---~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 39 LFSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSR---APARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhhc---CCceeEEEeCCHHHHHHHHHHHHH
Confidence 345555554 22333334455667789998777765545544544 347999999999988765544443
No 423
>PRK09135 pteridine reductase; Provisional
Probab=63.94 E-value=45 Score=29.27 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=51.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~-~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.+.+||-.|+ +|+.+.+++..+. .+.+|++++.+ ....+.+...+...+-.++.++..|..+..... ...
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 6778888877653 34689999875 455555555555443345788888987643110 012
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
..+|.|+..+.
T Consensus 84 ~~~d~vi~~ag 94 (249)
T PRK09135 84 GRLDALVNNAS 94 (249)
T ss_pred CCCCEEEECCC
Confidence 35799998664
No 424
>PRK06701 short chain dehydrogenase; Provisional
Probab=63.77 E-value=53 Score=30.22 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNK-ERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~-~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.+.++|-.|+ +|+.+..++..+. .+.+|+.++.+. ..++.....++..| .++.++..|+.+..... ...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3667876664 5667777776553 346788888774 34555555555545 34778888887643110 112
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
..+|.|+..+.
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 46899988653
No 425
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=63.49 E-value=29 Score=31.93 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=49.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHH-h-CCCcEEEEeccCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKL-S-GAANIEVLHGDFLNL 200 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~---g~V~avD~~~~~l~~l~~~~~~-~-g~~~v~~~~~D~~~~ 200 (337)
+.+..+..+.+.+|+|+|+-.||..+...+... .+.+.+|++...++.-.+.+.+ + ++ .|.-+++|....
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~ 145 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELA 145 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHH
Confidence 334445568899999999999999988876543 4789999999988765544433 3 22 266667776543
No 426
>PRK08265 short chain dehydrogenase; Provisional
Probab=63.38 E-value=1.1e+02 Score=27.33 Aligned_cols=76 Identities=7% Similarity=0.105 Sum_probs=48.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.++|=.| |+|+.+..++..+. .+.+|+.++.+...++.+.+.+ + .++.++..|..+.... ...++.
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 56777666 55667777777653 3458999999887665544332 3 3477888888764311 011356
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
.|.++..+.
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 899988664
No 427
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=63.34 E-value=51 Score=34.69 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~-~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|.+||=.| |+|+.+..++..+. .+.+|+.+|.+...++.+.+.+.. .+..++..+..|..+.... ...++
T Consensus 414 gkvvLVTG-asggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g 492 (676)
T TIGR02632 414 RRVAFVTG-GAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG 492 (676)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56677555 56778888877653 346899999998887776665543 3444577888888764311 01135
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.|+..+..
T Consensus 493 ~iDilV~nAG~ 503 (676)
T TIGR02632 493 GVDIVVNNAGI 503 (676)
T ss_pred CCcEEEECCCC
Confidence 68999887653
No 428
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.30 E-value=46 Score=29.51 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=53.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||-.|+ +|+.+..++..+. .+.+|+.++.+++.++.+.+.++..+ .++.++..|..+.... ...+++
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 567787775 5667777776553 34589999999988888777776665 3488888888764311 011346
Q ss_pred ccEEEECC
Q 019692 210 VRAILLDP 217 (337)
Q Consensus 210 fD~IlvDp 217 (337)
+|.|+..+
T Consensus 85 id~li~~a 92 (253)
T PRK06172 85 LDYAFNNA 92 (253)
T ss_pred CCEEEECC
Confidence 79999765
No 429
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.75 E-value=36 Score=29.96 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.++|=. .|+|+.+.+++..+. .+.+|++++.+++.+....+.++..+ .++.++..|+.+.... ...++
T Consensus 6 ~~~~vlIt-Ga~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVT-GAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEe-CCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35677744 457888888887653 23589999999888887777666544 3588888998764311 01124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.|+..+-
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 430
>PRK06197 short chain dehydrogenase; Provisional
Probab=62.62 E-value=34 Score=31.61 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|.+||=.| |+|+.+.+++..+. .+.+|+.++.+....+.+.+.+... +-.++.++..|+.+.... ...+
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777554 57788888887653 3358999999988877666665543 223578888898765311 0123
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+++|.|+..+.
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 56899998764
No 431
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=62.54 E-value=26 Score=31.98 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-------CCCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-------KDPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~-------~~~~~~~ 209 (337)
+..++=.|+++| ++...|+.+. .+.+|+......++++.+...+.. ..+.++..|.++... ....+++
T Consensus 6 ~kv~lITGASSG-iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 6 GKVALITGASSG-IGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CcEEEEecCcch-HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 456676776666 5666666553 345999999999999888877754 357788888877532 1234678
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|+++.++-
T Consensus 82 iDiLvNNAG 90 (246)
T COG4221 82 IDILVNNAG 90 (246)
T ss_pred ccEEEecCC
Confidence 999999875
No 432
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=62.44 E-value=69 Score=30.16 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=44.2
Q ss_pred eEEeecCCchhHHHHHHHHcCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEEEC
Q 019692 140 KVLDACSAPGNKTVHLAALMKG--KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAILLD 216 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~--~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~IlvD 216 (337)
+|| +.-|+|..+.+++..+.. ...|+++|.+...... ..+...++++.+|... ..........+|.|+--
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD------LVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH------hccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 455 556789999999887632 3589999986643321 1122358889999862 21100112357888864
Q ss_pred CCC
Q 019692 217 PSC 219 (337)
Q Consensus 217 pPC 219 (337)
+-+
T Consensus 76 aa~ 78 (347)
T PRK11908 76 VAI 78 (347)
T ss_pred ccc
Confidence 443
No 433
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=62.44 E-value=20 Score=36.41 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 134 APKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
...++++|+=+|||+=|. ++..|..++ ..|+++|.++++++.+++ +|.+
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 356799999999999775 555666653 489999999999887665 5654
No 434
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=62.28 E-value=9.8 Score=34.04 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=45.0
Q ss_pred hhHHHHHHhCCC----C----CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 125 ASSMVAAALAPK----P----GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 125 ss~l~~~~l~~~----~----g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
+|.+++.++... . .-++||+||-+......... -..|++||+++. .-.+...|
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~---------------~~~I~qqD 91 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ---------------HPGILQQD 91 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCC---------------CCCceeec
Confidence 566666665421 1 14899999986654433222 246999999751 12367788
Q ss_pred CCCCCCCCCCCCCccEEEE
Q 019692 197 FLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~Ilv 215 (337)
|.+.+......++||+|.+
T Consensus 92 Fm~rplp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISL 110 (219)
T ss_pred cccCCCCCCcccceeEEEE
Confidence 8887543222468999974
No 435
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=61.57 E-value=1.3e+02 Score=29.65 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=22.4
Q ss_pred HHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 263 HALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 263 ~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
.....+++|.+|.-..|+.+...+.+...+.+
T Consensus 104 ~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 104 SIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred HHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 33344566877777778888888888777664
No 436
>PLN02686 cinnamoyl-CoA reductase
Probab=60.59 E-value=64 Score=30.94 Aligned_cols=78 Identities=8% Similarity=0.093 Sum_probs=44.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+.+|| +.-|+|..+.++++.+.. +..|+++..+....+.+++ +...+ -.++.++.+|..+...-...+..
T Consensus 51 ~~~k~VL-VTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~-l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVC-VTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLRE-MEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEE-EECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 3466787 555778899988886543 3478876666555444422 21111 12478888888765321111234
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
+|.|+.
T Consensus 129 ~d~V~h 134 (367)
T PLN02686 129 CAGVFH 134 (367)
T ss_pred ccEEEe
Confidence 677763
No 437
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=60.56 E-value=14 Score=29.23 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=28.9
Q ss_pred CchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 147 APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 147 G~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
|.|..+.++|+.++ .+|+++|.++.+++.++ ++|..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~ 36 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGAD 36 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTES
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccc
Confidence 45888999999875 89999999999987654 56754
No 438
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.93 E-value=31 Score=31.62 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=49.0
Q ss_pred CCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|..+|=.|++. +|.+..++..+. .+.+|+.++.+.+..+.+++..+..+.. .++..|..+.... ...++
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 67888888863 677777777553 3458888888854333444444444433 4567788765321 11246
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.++.++-
T Consensus 83 ~iDilVnnAG 92 (274)
T PRK08415 83 KIDFIVHSVA 92 (274)
T ss_pred CCCEEEECCc
Confidence 7899988764
No 439
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.91 E-value=71 Score=29.52 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=27.3
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
+|.=+|+|.-|.++...-. ..+..|+.+|.+++.++.+.+.+.
T Consensus 6 kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred EEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5655677666554433222 223589999999999887665443
No 440
>PRK08628 short chain dehydrogenase; Provisional
Probab=59.66 E-value=1.2e+02 Score=26.83 Aligned_cols=78 Identities=5% Similarity=0.032 Sum_probs=49.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
|..+|=.| |+|+.+.+++..+. .+.+|+.++.++... .+.+.+...+. ++.++..|+.+.... ...++.
T Consensus 7 ~~~ilItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK08628 7 DKVVIVTG-GASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQP-RAEFVQVDLTDDAQCRDAVEQTVAKFGR 83 (258)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 56777666 46778888777653 335788888887766 34444444443 478888888764311 011246
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 84 id~vi~~ag 92 (258)
T PRK08628 84 IDGLVNNAG 92 (258)
T ss_pred CCEEEECCc
Confidence 899998664
No 441
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=59.40 E-value=2e+02 Score=28.94 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhh
Q 019692 259 KALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ 316 (337)
Q Consensus 259 ~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (337)
...+...+.++.|.+|....|+-+.-++.++..+++.....+|.+.- .|+.-..|..
T Consensus 108 ~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~-~PErl~~G~a 164 (473)
T PLN02353 108 SAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILS-NPEFLAEGTA 164 (473)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEE-CCCccCCCCc
Confidence 33444444556688888888888888888887777532234566642 3555555543
No 442
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=59.38 E-value=12 Score=34.14 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=37.2
Q ss_pred CeEEeecCCchhHHHHHHHHcCC-------CCEEEEEeCCHHHHHHHHHHHHH
Q 019692 139 WKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~-------~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
-.|+++|+|.|..+..+...+.. ..+++-+|+|+...+.-+++++.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 59999999999999998887753 25899999999998888888765
No 443
>PRK07102 short chain dehydrogenase; Provisional
Probab=59.18 E-value=61 Score=28.54 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=52.1
Q ss_pred eEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC----CCCCCccEEE
Q 019692 140 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD----PAYSEVRAIL 214 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~----~~~~~fD~Il 214 (337)
+|+-.| |+|+.+..++..+-. +.+|++++.+++..+...+.+...+-.++.++..|..+...-. .-...+|.++
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 566555 667788887776533 3589999999988777666655444457889999987653210 0012479999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
..+.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8764
No 444
>PRK06720 hypothetical protein; Provisional
Probab=59.03 E-value=54 Score=27.86 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=50.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|..+|-.|++. +.+..++..+ ....+|+.+|.+...++...+.+...+. .+.++..|..+.... ...++
T Consensus 15 ~gk~~lVTGa~~-GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGI-GIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG-EALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 366777777654 4566666544 3346899999998877766666655453 356677887654311 11245
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.++.++.
T Consensus 93 ~iDilVnnAG 102 (169)
T PRK06720 93 RIDMLFQNAG 102 (169)
T ss_pred CCCEEEECCC
Confidence 7899998764
No 445
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.71 E-value=88 Score=29.00 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=49.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~-~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|.++|=.|+ +|+.+..++..+. .+.+|+.+|.+ ....+.+.+.++..| .++.++..|+.+.... .. ++
T Consensus 12 ~k~~lVTGa-s~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dv~d~~~~~~~~~~~~~-~g 88 (306)
T PRK07792 12 GKVAVVTGA-AAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG-AKAVAVAGDISQRATADELVATAVG-LG 88 (306)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHH-hC
Confidence 567775554 4567777776553 34588888874 445555656665555 3477888888763211 11 35
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.++..+-
T Consensus 89 ~iD~li~nAG 98 (306)
T PRK07792 89 GLDIVVNNAG 98 (306)
T ss_pred CCCEEEECCC
Confidence 7899998764
No 446
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=58.68 E-value=40 Score=31.19 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=63.0
Q ss_pred cCCchhHHHHHHHHcCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC-CC
Q 019692 145 CSAPGNKTVHLAALMKGKG---KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS-CS 220 (337)
Q Consensus 145 ~aG~G~kt~~la~~~~~~g---~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP-CS 220 (337)
.-|+|..+.++.+.+-..+ .|.++|+.+.... ....... ...+++.+|..+...-......+|.||--+. .+
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~--~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKS--GVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhcc--cceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 3588999999887764445 6888887665322 1122222 2244889998875432222456888887643 22
Q ss_pred CccccCcccCccCCCCCCCCCCCcccHH-HHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 221 GSGTAAERLDHLLPSHASGHTADPTEME-RLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 221 g~G~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
..| . ...+ -..--.+--+.+|+.+.+. ...++||++..
T Consensus 79 ~~~---~-----------------~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~ 117 (280)
T PF01073_consen 79 PWG---D-----------------YPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSI 117 (280)
T ss_pred ccC---c-----------------ccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCc
Confidence 111 0 0122 2223445567778777653 44789997544
No 447
>PRK06138 short chain dehydrogenase; Provisional
Probab=58.61 E-value=1.3e+02 Score=26.44 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.++|=.|+ +|+.+.+++..+. .+.+|+.++.+...+....+.+. .+ .++.++..|+.+...-. ..+++
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 556775655 6778888877543 33589999998877776666554 33 34788888987643110 11246
Q ss_pred ccEEEECCCC
Q 019692 210 VRAILLDPSC 219 (337)
Q Consensus 210 fD~IlvDpPC 219 (337)
+|.|+..+..
T Consensus 82 id~vi~~ag~ 91 (252)
T PRK06138 82 LDVLVNNAGF 91 (252)
T ss_pred CCEEEECCCC
Confidence 8999986653
No 448
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.58 E-value=29 Score=32.12 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||=.| |+|+.+.+++..+ ..+.+|+.++.+.+.++.+.+.+...+. .+.++..|..+.... ...++.
T Consensus 40 ~k~vlItG-asggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTG-ASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677555 4667788887755 3346899999999888887777766553 377888888764311 001346
Q ss_pred ccEEEECC
Q 019692 210 VRAILLDP 217 (337)
Q Consensus 210 fD~IlvDp 217 (337)
+|.|+..+
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999854
No 449
>PLN02583 cinnamoyl-CoA reductase
Probab=58.26 E-value=1.4e+02 Score=27.43 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=41.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG--AANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g--~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
++.+||= ..|+|+.+.+++..+- .+.+|+++..+....+ ..+.+.... -.+++++.+|..+...-.......|.|
T Consensus 5 ~~k~vlV-TGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~-~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 5 SSKSVCV-MDASGYVGFWLVKRLLSRGYTVHAAVQKNGETE-IEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CCCEEEE-ECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhh-HHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 3556774 4567888888877653 3458988876432211 111122211 135888888887643211112346777
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
+.
T Consensus 83 ~~ 84 (297)
T PLN02583 83 FC 84 (297)
T ss_pred EE
Confidence 63
No 450
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=58.08 E-value=19 Score=32.95 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC----CCCEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK--------------------------ERVRRLKDTIKLSG 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~----~~g~V~avD~~~--------------------------~~l~~l~~~~~~~g 186 (337)
-.+.|+++|+--|+.+..++..+. ...+|+++|.-+ -.++..++|++++|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 356899999999998877766542 235788877422 13556677777777
Q ss_pred C--CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 019692 187 A--ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 264 (337)
Q Consensus 187 ~--~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A 264 (337)
+ ++|.++.+++.+..+..+ ..++-++-+|.= + -+--+..|++.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p-~~~IAll~lD~D------------l----------------------YesT~~aLe~l 198 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAP-IERIALLHLDCD------------L----------------------YESTKDALEFL 198 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-T-T--EEEEEE---------------S----------------------HHHHHHHHHHH
T ss_pred CCcccEEEECCcchhhhccCC-CccEEEEEEecc------------c----------------------hHHHHHHHHHH
Confidence 6 569999999876554432 245555655531 1 11125678888
Q ss_pred hCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 265 LSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 265 ~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
...+.+|.+|..-=..++.. ...|..|.+
T Consensus 199 yprl~~GGiIi~DDY~~~gc-r~AvdeF~~ 227 (248)
T PF05711_consen 199 YPRLSPGGIIIFDDYGHPGC-RKAVDEFRA 227 (248)
T ss_dssp GGGEEEEEEEEESSTTTHHH-HHHHHHHHH
T ss_pred HhhcCCCeEEEEeCCCChHH-HHHHHHHHH
Confidence 77665555554433323333 345566664
No 451
>PRK06482 short chain dehydrogenase; Provisional
Probab=58.07 E-value=41 Score=30.37 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=48.7
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCcc
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEVR 211 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~fD 211 (337)
+||=. -|+|+.+.+++..+. .+.+|++++.+++.++.++... + .++.++..|..+...-. .....+|
T Consensus 4 ~vlVt-Gasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 4 TWFIT-GASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G-DRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred EEEEe-cCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 46644 457888888887653 3358999999987776655432 2 35788888887653110 0124579
Q ss_pred EEEECCCCC
Q 019692 212 AILLDPSCS 220 (337)
Q Consensus 212 ~IlvDpPCS 220 (337)
.|+..+..+
T Consensus 79 ~vi~~ag~~ 87 (276)
T PRK06482 79 VVVSNAGYG 87 (276)
T ss_pred EEEECCCCC
Confidence 999865433
No 452
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=57.96 E-value=24 Score=29.61 Aligned_cols=99 Identities=12% Similarity=0.171 Sum_probs=56.0
Q ss_pred CchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCcccc
Q 019692 147 APGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 225 (337)
Q Consensus 147 G~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~ 225 (337)
|.|..+..|+..+. ....|++.|.++++++.+.+. | ++.. .+..++. ...|+|++=.|
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g---~~~~-~s~~e~~------~~~dvvi~~v~------- 66 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G---AEVA-DSPAEAA------EQADVVILCVP------- 66 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T---EEEE-SSHHHHH------HHBSEEEE-SS-------
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h---hhhh-hhhhhHh------hcccceEeecc-------
Confidence 55677777777653 346899999999888766544 3 3222 2222221 24588887544
Q ss_pred CcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH--HhCCCCCcEEEEEcCCCCcccCHHHHHHHh
Q 019692 226 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH--ALSFPGVERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 226 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~--A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+.+.+ +.++.. .+..+++|.++.-+.|+.|++...+-+.+-
T Consensus 67 --------------------~~~~v-------~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~ 109 (163)
T PF03446_consen 67 --------------------DDDAV-------EAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLA 109 (163)
T ss_dssp --------------------SHHHH-------HHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH
T ss_pred --------------------cchhh-------hhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh
Confidence 11222 233443 445556688888888889988888777654
No 453
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=57.43 E-value=10 Score=29.67 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=39.3
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC-CCC-cccCH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC-SIH-QVENE 286 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTC-S~~-~~ENe 286 (337)
+||+|+-+||.-........ .....+-.++..-.++.+++++ .|.+.|.|= |+. ..+.-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~------------------~~~~~~~~dlY~~Fie~~~~ll-~G~~~~I~P~~~l~~~~~~ 62 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKK------------------KKKKKKKSDLYILFIEKSLNLL-NGYLSFITPNSFLKSGKYG 62 (106)
T ss_pred CcCEEEECCCChhhccccch------------------hhcccccCcHHHHHHHHHHHHh-CCeEEEEeChHHhCcCchH
Confidence 59999999997655422110 0000113455567788888877 688877653 444 45555
Q ss_pred HHHHHHh
Q 019692 287 DVIKSVL 293 (337)
Q Consensus 287 ~vv~~~l 293 (337)
....++|
T Consensus 63 ~~lR~~l 69 (106)
T PF07669_consen 63 KKLRKFL 69 (106)
T ss_pred HHHHHHH
Confidence 5566665
No 454
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.37 E-value=42 Score=31.52 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCCeEEeecCCchh---HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGN---KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPA 206 (337)
Q Consensus 137 ~g~~VLDl~aG~G~---kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~ 206 (337)
.|+.||=.|+|.|- .+..+|++ ..+++..|++.+-.....+.+++.| .+.....|..+...- ..+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 48899999999885 23334443 4589999999999999888888877 677888887764311 112
Q ss_pred CCCccEEEECCC
Q 019692 207 YSEVRAILLDPS 218 (337)
Q Consensus 207 ~~~fD~IlvDpP 218 (337)
.+.+|+++.++-
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 467888888764
No 455
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.17 E-value=63 Score=29.75 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHH
Q 019692 147 APGNKTVHLAALMKG-KGKIVACELNKERVRRLKD 180 (337)
Q Consensus 147 G~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~ 180 (337)
|.|..+..++..+.. +..|+++|.++..++.+.+
T Consensus 7 G~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 7 GLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455555555554432 3489999999988776643
No 456
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.91 E-value=51 Score=29.00 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=52.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.+||=.| |+|+.+.+++..+. .+.+|++++.++..++.+...+.. + .++.++..|..+..... ..+..
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666555 55677777776653 335899999999887777666554 3 34788888887643211 11246
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
+|.|+..+...
T Consensus 82 ~d~vi~~ag~~ 92 (251)
T PRK07231 82 VDILVNNAGTT 92 (251)
T ss_pred CCEEEECCCCC
Confidence 89999876543
No 457
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=56.69 E-value=1.5e+02 Score=29.16 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhc
Q 019692 271 ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF 317 (337)
Q Consensus 271 G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (337)
..+|..--|+-+.-++.+.+.+.......+|.++. .|++-+.|..+
T Consensus 113 ~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~-NPEFLREG~Av 158 (414)
T COG1004 113 KAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVAS-NPEFLREGSAV 158 (414)
T ss_pred CeEEEEcCCCCCCchHHHHHHHHhhcccCCceEec-ChHHhcCcchh
Confidence 37777777888888999999888655455787764 47787888655
No 458
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=56.69 E-value=15 Score=38.23 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=44.3
Q ss_pred CeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEEC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILLD 216 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~IlvD 216 (337)
.+|+=+|+|.= +..+++.+... -.++.+|.|+++++.+++ .| ..++.+|+.+...- .....+.|.|++-
T Consensus 401 ~~vII~G~Gr~--G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 401 PRVIIAGFGRF--GQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG---MKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred CcEEEEecChH--HHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC---CeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 45665555554 55556655433 479999999999988765 34 45788998876411 1123567777763
No 459
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=56.50 E-value=79 Score=33.08 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKG--KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRA 212 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~--~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~ 212 (337)
+++.+||= .-|+|..+.++++.+.. +-+|+++|......... .+..+++++.+|..+.... ......+|.
T Consensus 313 ~~~~~VLV-TGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ 385 (660)
T PRK08125 313 KRRTRVLI-LGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF------LGHPRFHFVEGDISIHSEWIEYHIKKCDV 385 (660)
T ss_pred hcCCEEEE-ECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh------cCCCceEEEeccccCcHHHHHHHhcCCCE
Confidence 35677874 45899999999987653 35999999876433211 1223588889998763210 001245898
Q ss_pred EEECC
Q 019692 213 ILLDP 217 (337)
Q Consensus 213 IlvDp 217 (337)
|+-=+
T Consensus 386 ViHlA 390 (660)
T PRK08125 386 VLPLV 390 (660)
T ss_pred EEECc
Confidence 88633
No 460
>PRK06141 ornithine cyclodeaminase; Validated
Probab=56.50 E-value=84 Score=29.59 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=44.8
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHH-cCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGA 187 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~-~~~~g~V~avD~~~~~l~~l~~~~~~~g~ 187 (337)
..|.+++..|......+|+-+|||.=+.....+-. +.+..+|+..+.++++.+.+.+.++..|.
T Consensus 111 a~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~ 175 (314)
T PRK06141 111 AASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF 175 (314)
T ss_pred HHHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 34667777777667789988887766555432222 24456899999999998888888766553
No 461
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.41 E-value=14 Score=37.74 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEECCC
Q 019692 146 SAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILLDPS 218 (337)
Q Consensus 146 aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~IlvDpP 218 (337)
||.|..+..+++.+.. +..++.+|.|+++++.+++ .| +..+.+|+.+...- ....+++|.+++.-+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g---~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG---IRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC---CeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 5556666777777643 3589999999999888763 23 56889998874311 112357888876433
No 462
>PRK05872 short chain dehydrogenase; Provisional
Probab=55.98 E-value=1e+02 Score=28.34 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.+||-.| |+|+.+..++..+. .+.+|+.++.+...++.+.+.+.. + ..+..+..|..+.... ...++
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467788666 55667777777653 335899999998877766555421 2 2355566787654311 01135
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.|+.++-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 6899998765
No 463
>PRK07069 short chain dehydrogenase; Validated
Probab=55.97 E-value=85 Score=27.60 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=43.8
Q ss_pred CCchhHHHHHHHHcC-CCCEEEEEeCC-HHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC-------CCCCCCccEEEE
Q 019692 146 SAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK-------DPAYSEVRAILL 215 (337)
Q Consensus 146 aG~G~kt~~la~~~~-~~g~V~avD~~-~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~-------~~~~~~fD~Ilv 215 (337)
.|+|+.+.+++..+. .+.+|+.++.+ .+.++.+.+.+..... ..+.++..|+.+.... ...++..|.|+.
T Consensus 6 G~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 85 (251)
T PRK07069 6 GAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLVN 85 (251)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEEE
Confidence 346667777777653 33589999987 7777777666654322 2345566777653311 011346799987
Q ss_pred CC
Q 019692 216 DP 217 (337)
Q Consensus 216 Dp 217 (337)
.+
T Consensus 86 ~a 87 (251)
T PRK07069 86 NA 87 (251)
T ss_pred CC
Confidence 65
No 464
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=55.94 E-value=62 Score=26.39 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~--g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.+|+-+|+ |+.+..++..+... ..|+.+|.+++..+.+.+.+...+ +.....|..+. ...+|+|+
T Consensus 18 ~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG---IAIAYLDLEEL------LAEADLII 86 (155)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc---cceeecchhhc------cccCCEEE
Confidence 4678888877 45665666544322 479999999888776655543211 11112222211 25689999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
+-.|
T Consensus 87 ~~~~ 90 (155)
T cd01065 87 NTTP 90 (155)
T ss_pred eCcC
Confidence 8665
No 465
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=55.47 E-value=1.5e+02 Score=26.25 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=51.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
+..||-.| |+|+.+.+++..+. .+..|+.+|.+...++.+.+.++.. +-.++.++..|..+.... ...++
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34677667 56777777776653 3458999999988777666655432 223588888888763211 01135
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.|+..+.
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 466
>PLN02540 methylenetetrahydrofolate reductase
Probab=54.62 E-value=27 Score=35.91 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=51.2
Q ss_pred CCeEEeecCCchh----HHHHHHHHcCCC------CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 138 GWKVLDACSAPGN----KTVHLAALMKGK------GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 138 g~~VLDl~aG~G~----kt~~la~~~~~~------g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
+=..+++.-|.|| +|+.++..+... .+++|.|.+...++..-..+..+|+.||-.+.||.-.
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~ 99 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPH 99 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 4467888888887 577777766543 4799999999999999999999999999999999654
No 467
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=54.50 E-value=27 Score=32.77 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=64.5
Q ss_pred ecCCchhHHHHHHHHcCC--CCEEEEEeCCHHHHHHHHHHHHHh-CCCcE----EEEeccCCCCCCCCC--CCCCccEEE
Q 019692 144 ACSAPGNKTVHLAALMKG--KGKIVACELNKERVRRLKDTIKLS-GAANI----EVLHGDFLNLDPKDP--AYSEVRAIL 214 (337)
Q Consensus 144 l~aG~G~kt~~la~~~~~--~g~V~avD~~~~~l~~l~~~~~~~-g~~~v----~~~~~D~~~~~~~~~--~~~~fD~Il 214 (337)
+.-|.|+.+..+.+.+-. ..+|+.+|.++..+-.+++.+... +-.++ .++.+|.++...-.. ...++|.||
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 345788899888887632 368999999999999999988543 22233 455788876431110 113689999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 275 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvY 275 (337)
--+----..++- ....+.+..-.--...+++.|.+. ....+|.
T Consensus 83 HaAA~KhVpl~E-----------------~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ 125 (293)
T PF02719_consen 83 HAAALKHVPLME-----------------DNPFEAVKTNVLGTQNVAEAAIEH-GVERFVF 125 (293)
T ss_dssp E------HHHHC-----------------CCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEE
T ss_pred EChhcCCCChHH-----------------hCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEE
Confidence 766522222211 113566666667778888888875 3344444
No 468
>PRK06180 short chain dehydrogenase; Provisional
Probab=54.27 E-value=1.2e+02 Score=27.46 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=47.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+..||=.| |+|+.+.+++..+. .+.+|++++.++..++.+... . -.++.++..|..+.... ...++.
T Consensus 4 ~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITG-VSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---H-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEec-CCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---c-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45677555 56677888777653 345899999998776554332 1 23577788887764311 011245
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 79 ~d~vv~~ag 87 (277)
T PRK06180 79 IDVLVNNAG 87 (277)
T ss_pred CCEEEECCC
Confidence 899988654
No 469
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.25 E-value=26 Score=34.52 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=48.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Ilv 215 (337)
..+|+=+|+ |..+..+++.+.. ...|+.+|.++++++.+++.. .++.++.+|+.+...- .....++|.|++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 356665555 6666667776644 458999999999988776642 2466888888654311 112357888887
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
-.+
T Consensus 304 ~~~ 306 (453)
T PRK09496 304 LTN 306 (453)
T ss_pred CCC
Confidence 544
No 470
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=54.18 E-value=53 Score=28.95 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Q 019692 136 KPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLK 179 (337)
Q Consensus 136 ~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~ 179 (337)
.+|++||..|+|+ |..+.+++...+ .+|++++.++.+.+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 7899999999886 556666776653 68999999988776654
No 471
>PRK05854 short chain dehydrogenase; Provisional
Probab=54.10 E-value=68 Score=29.92 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=53.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|.+++=.|+ +|+.+..++..+. .+.+|+.+..+.+..+.+.+.+.... -.++.++..|..+.... ...++
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 567775554 5677888777553 34689999999888877777665432 23588888898765311 01235
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.++.++.
T Consensus 93 ~iD~li~nAG 102 (313)
T PRK05854 93 PIHLLINNAG 102 (313)
T ss_pred CccEEEECCc
Confidence 6899998764
No 472
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.84 E-value=1.5e+02 Score=25.72 Aligned_cols=79 Identities=11% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~a-vD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
..+||=.| |+|+.+..++..+... ..|+. ...+....+.+...+...+ .++.++..|..+...-. ....
T Consensus 6 ~~~vlItG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 6 GRVALVTG-AARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALG-RRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-CceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 35777555 5888888888765332 35555 4445656666655555544 34888888887643110 0124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.|+..+.
T Consensus 84 ~id~vi~~ag 93 (249)
T PRK12825 84 RIDILVNNAG 93 (249)
T ss_pred CCCEEEECCc
Confidence 6799987555
No 473
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=53.48 E-value=89 Score=27.69 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.++|-.| |+|+.+..++..+ ..+.+|+.++.+++.++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467888777 5666777777654 3346899999998888877777776653 477888887654210 01134
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.|+..+-
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6799998764
No 474
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=53.34 E-value=61 Score=31.51 Aligned_cols=77 Identities=21% Similarity=0.171 Sum_probs=46.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHH--HHHHHHHhCCCcEEEEeccCCCCCCCCCCCC----C
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRR--LKDTIKLSGAANIEVLHGDFLNLDPKDPAYS----E 209 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~--l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~----~ 209 (337)
.+.+||=+| |+|..+.++++.+. .+..|++++.+...... ........ ..+++++.+|+.+...-..... .
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE-LPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh-cCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 466888666 78999988887653 34589999987654321 01111111 2358889999877532110011 5
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
+|.|+.
T Consensus 137 ~D~Vi~ 142 (390)
T PLN02657 137 VDVVVS 142 (390)
T ss_pred CcEEEE
Confidence 899886
No 475
>PRK06125 short chain dehydrogenase; Provisional
Probab=53.10 E-value=88 Score=27.85 Aligned_cols=79 Identities=9% Similarity=0.133 Sum_probs=52.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD~I 213 (337)
+.++|=.|+ +|+.+..++..+. .+.+|++++.++..++.+.+.++...-.++.++..|..+.... ...++.+|.+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 567776664 5667777766543 3358999999998888877777654334577888887653211 0113568988
Q ss_pred EECC
Q 019692 214 LLDP 217 (337)
Q Consensus 214 lvDp 217 (337)
+..+
T Consensus 86 v~~a 89 (259)
T PRK06125 86 VNNA 89 (259)
T ss_pred EECC
Confidence 8755
No 476
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=52.89 E-value=6.3 Score=39.32 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----CCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD----PKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~----~~~~~~~~fD 211 (337)
..+..+|=+|-|.|+....+-..+ +...++|+++++.+++.+..+.....-....+.-.|..... ........||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCc
Q ss_pred EEEEC
Q 019692 212 AILLD 216 (337)
Q Consensus 212 ~IlvD 216 (337)
++++|
T Consensus 373 vl~~d 377 (482)
T KOG2352|consen 373 VLMVD 377 (482)
T ss_pred EEEEE
No 477
>PLN02572 UDP-sulfoquinovose synthase
Probab=52.70 E-value=69 Score=31.76 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHH-------HHH------HHHHHH---HhCCCcEEEEeccCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKER-------VRR------LKDTIK---LSGAANIEVLHGDFLNL 200 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~-------l~~------l~~~~~---~~g~~~v~~~~~D~~~~ 200 (337)
+.+|| +.-|+|..+.++++.+.. +..|+++|..... +.. ..++++ ...-.+++++.+|..+.
T Consensus 47 ~k~VL-VTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d~ 125 (442)
T PLN02572 47 KKKVM-VIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICDF 125 (442)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCCH
Confidence 45677 556899999999887643 3489998842110 000 011111 11113588999998764
Q ss_pred CCCCCCC--CCccEEEECCCC
Q 019692 201 DPKDPAY--SEVRAILLDPSC 219 (337)
Q Consensus 201 ~~~~~~~--~~fD~IlvDpPC 219 (337)
..-...+ ..+|.|+.-+-.
T Consensus 126 ~~v~~~l~~~~~D~ViHlAa~ 146 (442)
T PLN02572 126 EFLSEAFKSFEPDAVVHFGEQ 146 (442)
T ss_pred HHHHHHHHhCCCCEEEECCCc
Confidence 3211001 147999986643
No 478
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=52.61 E-value=98 Score=25.20 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=53.0
Q ss_pred EEeecCCchhHHHHHHHHcC--CCCEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 141 VLDACSAPGNKTVHLAALMK--GKGKIVACELN--KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~--~~g~V~avD~~--~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
||=.|+ +|+.+..++..+- +...|+.+..+ ....+.+.+.++..+ .++.++..|+.+.... ...+..
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 444454 4566777666542 23478888888 788888888888777 6799999998764311 011357
Q ss_pred ccEEEECCCCCC
Q 019692 210 VRAILLDPSCSG 221 (337)
Q Consensus 210 fD~IlvDpPCSg 221 (337)
+|.++..+....
T Consensus 81 ld~li~~ag~~~ 92 (167)
T PF00106_consen 81 LDILINNAGIFS 92 (167)
T ss_dssp ESEEEEECSCTT
T ss_pred cccccccccccc
Confidence 899998766443
No 479
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=52.43 E-value=53 Score=30.35 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=35.4
Q ss_pred CCCCCCeEEeecCC-chhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG-~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
.++++++||..++| .|..+.++|+..+ .+|++++.++.+.+.+++ .|++.
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~ 212 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADE 212 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCE
Confidence 46788999987655 3566677777653 579999999988776643 56643
No 480
>PRK07791 short chain dehydrogenase; Provisional
Probab=52.40 E-value=62 Score=29.67 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=49.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCH---------HHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNK---------ERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--- 203 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~---------~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~--- 203 (337)
.|.++|-.|++. +.+..++..+ ....+|+.++.+. +.++.+.+.++..|. ++.++..|..+....
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHH
Confidence 467788777654 5666666654 2345788888765 556666666655443 467778888764311
Q ss_pred ----CCCCCCccEEEECCC
Q 019692 204 ----DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 ----~~~~~~fD~IlvDpP 218 (337)
...++.+|.++.++-
T Consensus 83 ~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 112467899998664
No 481
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=52.27 E-value=36 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=35.0
Q ss_pred hCCCCCCeEEeec-CC-chhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHH
Q 019692 133 LAPKPGWKVLDAC-SA-PGNKTVHLAALMK-GKGKIVACELNKERVRRLKDT 181 (337)
Q Consensus 133 l~~~~g~~VLDl~-aG-~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~ 181 (337)
..+++|++|+=.| +| .|..+.++|+.++ +..+|+++|.++++++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3567899988775 33 4445666777653 234799999999999988774
No 482
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=52.27 E-value=8.2 Score=37.11 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=24.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 174 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~ 174 (337)
..++||+|+|||.-..++-..+..-..++-++.|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l 150 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL 150 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH
Confidence 3569999999996555554555433456667766643
No 483
>PRK08303 short chain dehydrogenase; Provisional
Probab=52.11 E-value=54 Score=30.58 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=50.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCH----------HHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNK----------ERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-- 203 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~----------~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-- 203 (337)
.|..+|-.|++ +|.+..++..+. .+.+|+.++.+. +.++.+.+.++..|. .+.++..|..+....
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH
Confidence 36678877755 557777777653 345888888863 456666666665553 366788888764311
Q ss_pred -----CCCCCCccEEEECC
Q 019692 204 -----DPAYSEVRAILLDP 217 (337)
Q Consensus 204 -----~~~~~~fD~IlvDp 217 (337)
...++.+|.++.++
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 11245789999876
No 484
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.07 E-value=44 Score=30.47 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=48.7
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|-.|++. ++.+..+|..+. .+.+|+.++.+....+.+++..+..|. ...+..|+.+.... ...+
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 367888888876 367777776653 345888888776544444444444442 23577888764311 1124
Q ss_pred CCccEEEECC
Q 019692 208 SEVRAILLDP 217 (337)
Q Consensus 208 ~~fD~IlvDp 217 (337)
+.+|.++.++
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 6789988866
No 485
>PRK07340 ornithine cyclodeaminase; Validated
Probab=51.93 E-value=1.1e+02 Score=28.70 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=55.0
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHH-cCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~-~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 203 (337)
.|.+++..|......+|+-+|||.=+.....+-. ..+..+|+..+.++++.+.+.+.++..++. +...|..+.
T Consensus 112 ~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~---~~~~~~~~a--- 185 (304)
T PRK07340 112 VSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPT---AEPLDGEAI--- 185 (304)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCe---eEECCHHHH---
Confidence 4566677777667789999988777655443332 234468999999999988888887654432 222232221
Q ss_pred CCCCCCccEEEECCC
Q 019692 204 DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 ~~~~~~fD~IlvDpP 218 (337)
....|+|+.--|
T Consensus 186 ---v~~aDiVitaT~ 197 (304)
T PRK07340 186 ---PEAVDLVVTATT 197 (304)
T ss_pred ---hhcCCEEEEccC
Confidence 245788887444
No 486
>PRK12829 short chain dehydrogenase; Provisional
Probab=51.65 E-value=84 Score=27.86 Aligned_cols=81 Identities=9% Similarity=0.208 Sum_probs=52.9
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------C
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------P 205 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~ 205 (337)
..-++.++|-.|+ +|+.+.+++..+. .+..|++++.+++..+.+.+..... ++.++..|+.+...-. .
T Consensus 7 ~~~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHH
Confidence 3346788997776 4777888777653 3458999999988776655444322 4678888887643110 0
Q ss_pred CCCCccEEEECCC
Q 019692 206 AYSEVRAILLDPS 218 (337)
Q Consensus 206 ~~~~fD~IlvDpP 218 (337)
.+.++|.|+..+.
T Consensus 83 ~~~~~d~vi~~ag 95 (264)
T PRK12829 83 RFGGLDVLVNNAG 95 (264)
T ss_pred HhCCCCEEEECCC
Confidence 1246899998664
No 487
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=51.44 E-value=20 Score=37.20 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=45.2
Q ss_pred eEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEECC
Q 019692 140 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILLDP 217 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~IlvDp 217 (337)
+|+= ||.|..+..+++.+.. +-.++.+|.|+++++.+++ .| ..++.+|+.+...- .....+.|.|++--
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---YKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 4443 5566666677776543 3589999999999987764 34 45788998875311 11235678777643
Q ss_pred C
Q 019692 218 S 218 (337)
Q Consensus 218 P 218 (337)
+
T Consensus 473 ~ 473 (601)
T PRK03659 473 N 473 (601)
T ss_pred C
Confidence 3
No 488
>PRK07201 short chain dehydrogenase; Provisional
Probab=51.39 E-value=2.8e+02 Score=28.65 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=46.9
Q ss_pred eEEeecCCchhHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCCCcc
Q 019692 140 KVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSEVR 211 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~---~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~~~~~fD 211 (337)
+|| +.-|+|..+.+++..+- ...+|++++.+... ..+.......+..+++++.+|..+..... .....+|
T Consensus 2 ~IL-VTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D 79 (657)
T PRK07201 2 RYF-VTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDID 79 (657)
T ss_pred eEE-EeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCC
Confidence 345 55689999999888764 44689999986433 22222223334356899999987642110 0014689
Q ss_pred EEEECC
Q 019692 212 AILLDP 217 (337)
Q Consensus 212 ~IlvDp 217 (337)
.|+.-+
T Consensus 80 ~Vih~A 85 (657)
T PRK07201 80 HVVHLA 85 (657)
T ss_pred EEEECc
Confidence 888643
No 489
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=51.21 E-value=11 Score=35.05 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=40.8
Q ss_pred hhhhcCeEEEechhhHHHHHHh-C-----CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHH
Q 019692 112 PLIVNGCVFLQGKASSMVAAAL-A-----PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 176 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l-~-----~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~ 176 (337)
+..-+|.+.+=..+..++..+. . .-.|.+|||+|||+|-........ +...+...|.+...++
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh--ccceeeeEecchhhee
Confidence 3344455555555554444332 1 135889999999999887755443 3468899999877764
No 490
>PRK12742 oxidoreductase; Provisional
Probab=51.17 E-value=71 Score=27.85 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=42.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCCCcc
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVR 211 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~-~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~---~~~~~~~fD 211 (337)
.+.+||=.| |+|+.+..+++.+... .+|+.... +++.++.+. +..+ +.++..|..+... ....++++|
T Consensus 5 ~~k~vlItG-asggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~~---~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVLG-GSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QETG---ATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHhC---CeEEecCCCCHHHHHHHHHHhCCCc
Confidence 366777555 5777888888765433 47777654 444444332 2233 3456667654321 011135689
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
.++..+.
T Consensus 78 ~li~~ag 84 (237)
T PRK12742 78 ILVVNAG 84 (237)
T ss_pred EEEECCC
Confidence 9987654
No 491
>PRK07825 short chain dehydrogenase; Provisional
Probab=51.13 E-value=1.8e+02 Score=25.99 Aligned_cols=75 Identities=7% Similarity=0.012 Sum_probs=47.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
|.++|=.| |+|+.+..++..+. .+..|+.++.+++.++.+.+.+. ++.++..|+.+.... ...++.
T Consensus 5 ~~~ilVtG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 5 GKVVAITG-GARGIGLATARALAALGARVAIGDLDEALAKETAAELG-----LVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 55677555 45778888777543 34588999999887766544432 467788888764311 111356
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
.|.++..+-
T Consensus 79 id~li~~ag 87 (273)
T PRK07825 79 IDVLVNNAG 87 (273)
T ss_pred CCEEEECCC
Confidence 799988654
No 492
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.89 E-value=38 Score=30.59 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=48.4
Q ss_pred CCCeEEeecC-CchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACS-APGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~a-G~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|=.|+ |+++.+..++..+. ...+|+.++.+....+.+++..+..| ....+..|+.+.... ...+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD--SELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC--CceEEECCCCCHHHHHHHHHHHHHHh
Confidence 3668888887 57788888887663 33578877665433334444333333 234677888764311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+.+|.++.++-
T Consensus 83 g~iD~lVnnAG 93 (261)
T PRK08690 83 DGLDGLVHSIG 93 (261)
T ss_pred CCCcEEEECCc
Confidence 67899998764
No 493
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.80 E-value=1.6e+02 Score=27.03 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=28.6
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
+|-=+|+|.-|.++...-. ..+..|+.+|.+++.++.++++++
T Consensus 5 kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4556677766554433222 233589999999999988877653
No 494
>PRK06500 short chain dehydrogenase; Provisional
Probab=50.44 E-value=1.7e+02 Score=25.51 Aligned_cols=76 Identities=11% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||=.| |+|+.+.++++.+. ...+|+.++.+...++.+.+. .+. ++.++..|..+.... ...+++
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTALITG-GTSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LGE-SALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 55666554 56777877777653 335899999987766554433 342 466777787654311 011246
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 81 id~vi~~ag 89 (249)
T PRK06500 81 LDAVFINAG 89 (249)
T ss_pred CCEEEECCC
Confidence 899998764
No 495
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=49.90 E-value=67 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=32.9
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
...+++|++||-.++|. |..+.++|+.++ ..+|++++.++++.+.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH
Confidence 45677899998887654 445566666653 2249999999888765443
No 496
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=49.87 E-value=31 Score=32.75 Aligned_cols=76 Identities=25% Similarity=0.302 Sum_probs=42.3
Q ss_pred hCCCCCCeEEeecC--CchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCC
Q 019692 133 LAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 133 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~ 209 (337)
...++|++||=.|+ |.|..+++||+.++. .++++-.+.+..+ .++++|.+. |.....|+.+-.........
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 44678999997774 345567788887632 6666666664443 455667654 33333333222111111135
Q ss_pred ccEEE
Q 019692 210 VRAIL 214 (337)
Q Consensus 210 fD~Il 214 (337)
+|+|+
T Consensus 212 vDvv~ 216 (326)
T COG0604 212 VDVVL 216 (326)
T ss_pred ceEEE
Confidence 88887
No 497
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.45 E-value=1.1e+02 Score=26.69 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=51.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||-.|+ +|+.+..+++.+. .+.+|++++.++..+..+.+.+...+ ++.++..|..+.... ...++.
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 668887776 4777887777653 34589999999888877655554432 577888888764311 111245
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 82 id~ii~~ag 90 (238)
T PRK05786 82 IDGLVVTVG 90 (238)
T ss_pred CCEEEEcCC
Confidence 788887654
No 498
>PRK08263 short chain dehydrogenase; Provisional
Probab=49.33 E-value=1.3e+02 Score=27.06 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=48.6
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+..||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.. + ..+.++..|+.+.... ....+.
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---G-DRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---c-CCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 34567666 5777888888765 33458999999988776554432 2 2467778887664321 011246
Q ss_pred ccEEEECCCC
Q 019692 210 VRAILLDPSC 219 (337)
Q Consensus 210 fD~IlvDpPC 219 (337)
+|.|+..+-.
T Consensus 78 ~d~vi~~ag~ 87 (275)
T PRK08263 78 LDIVVNNAGY 87 (275)
T ss_pred CCEEEECCCC
Confidence 8999886643
No 499
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=49.17 E-value=47 Score=30.52 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCc
Q 019692 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 188 ~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.+|++.+.|+.++.... ..=|+|++|||..+.
T Consensus 154 ~~v~i~~~Df~~~i~~~---~~~dfvYlDPPY~~~ 185 (266)
T TIGR00571 154 QNTTFLCGSFEKILAMV---DDDSFVYCDPPYLPL 185 (266)
T ss_pred cCCEEEECCHHHHHhhc---CCCCEEEECCCCCCC
Confidence 36889999998875432 334799999998643
No 500
>PRK10904 DNA adenine methylase; Provisional
Probab=49.14 E-value=27 Score=32.27 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=23.0
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCC
Q 019692 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 188 ~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg 221 (337)
.+|++.+.|+.++.... ..=|.|++|||.-.
T Consensus 156 ~~v~i~~~Df~~~i~~~---~~~~fvYlDPPY~~ 186 (271)
T PRK10904 156 QNAFFYCESYADSMARA---DKGSVVYCDPPYAP 186 (271)
T ss_pred cCCEEEECCHHHHHhhc---CCCcEEEECCCCCC
Confidence 46889999998875432 23479999999854
Done!