RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019692
(337 letters)
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 194 bits (495), Expect = 2e-59
Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 23/291 (7%)
Query: 9 LHTNLRHP--LWPVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPR 66
L R L F H + L L ++ A+ P PR
Sbjct: 31 LRRLERSEEALLEEILRPAFRYSHPEWLVEKLPDALG------EDEAEAIAAALLRPPPR 84
Query: 67 YVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 125
+RVNTLK DV+ + L + + +K ++ ++L + + P G +++Q +A
Sbjct: 85 SLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEA 144
Query: 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV-ACELNKERVRRLKDTIKL 184
S + A L PKPG +VLD C+APG KT HLA LM+ +G IV A +++ +R++RL++ +K
Sbjct: 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR 204
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADP 244
G N+ V++ D L P + ILLD CSG+G D P
Sbjct: 205 LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKW-------RRTP 257
Query: 245 TEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
E + +L+ QK+ L AL PG +VYSTCS+ ENE+V++ L
Sbjct: 258 ---EDIAELAKLQKEILAAALKLLKPG-GVLVYSTCSLTPEENEEVVERFL 304
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 143 bits (364), Expect = 3e-39
Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 62 VPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
P +RVNTLK+ V+ + +L ++ + V++ L P+ L++ G ++ L +G +
Sbjct: 175 EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKG-NIAGTDLFKDGLIT 233
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+Q ++S +VA AL PK G VLDAC+APG KT H+A L+K GK+VA ++++ +++ +++
Sbjct: 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 240
K G NIE D + K + IL+D CSG G + D +
Sbjct: 294 NAKRLGLTNIETKALDARKVHEKFAEKFDK--ILVDAPCSGLGVIRRKPD-------IKY 344
Query: 241 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
++E L ++ Q + L + G +VYSTC+I + ENE+VI++ L
Sbjct: 345 NKTKEDIESLQEI---QLEILESVAQYLKKG-GILVYSTCTIEKEENEEVIEAFL 395
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 116 bits (294), Expect = 2e-29
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q +++ +VA L P+PG +LDAC+APG KT H+A LM +G+I A + + R+++L++
Sbjct: 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296
Query: 182 IKLSGAANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLD---HLLPSHA 237
+ G +I++L D NL P + ILLD CSG GT D P
Sbjct: 297 AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTP--- 353
Query: 238 SGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVLPI 295
E++ +L+ Q + L PG +VY+TC++H ENE I+ L
Sbjct: 354 ----------EKIQELAPLQAELLESLAPLLKPG-GTLVYATCTLHPAENEAQIEQFL-- 400
Query: 296 AMSFGFQLATPFPN 309
A ++L P
Sbjct: 401 ARHPDWKLEPPKQK 414
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 111 bits (278), Expect = 1e-28
Identities = 79/235 (33%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 68 VRVNTLKMDVDSAVLELGKQFVVQKDDLVP-----DLLILPPGCDLHVHPLIVNGCVFLQ 122
+RVNTLK++V+ + L + VV + G P + G + Q
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFEVKESPFSIGST----PEYLFGYYYPQ 56
Query: 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182
+S + AL P+ +VLD +APG KT ++ LMK KG IVA E++K R + L I
Sbjct: 57 EASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNI 116
Query: 183 KLSGAANIEVLHGDFLNLDPKDPAY-SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHT 241
G N V++ D K AY + AILLD CSG G R D PS +
Sbjct: 117 NRMGVLNTIVINAD----GRKFGAYLLKFDAILLDAPCSGEGVI--RKD---PSRKRNWS 167
Query: 242 ADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
E + S QK+ + AL GV +VYSTCS+ ENE+VI +L
Sbjct: 168 -----EEDIKYCSLLQKELIDAAIDALKPGGV--LVYSTCSLEVEENEEVIDYIL 215
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
RsmB. This protein is also known as sun protein. The
reading frame was originally interpreted as two reading
frames, fmu and fmv. The recombinant protein from E.
coli was shown to methylate only C967 of small subunit
(16S) ribosomal RNA and to produce only m5C at that
position. The seed alignment is built from bacterial
sequences only. Eukaryotic homologs include Nop2, a
protein required for processing pre-rRNA, that is likely
also a rRNA methyltransferase, although the fine
specificity may differ. Cutoff scores are set to avoid
treating archaeal and eukaroytic homologs automatically
as functionally equivalent, although they may have very
similar roles [Protein synthesis, tRNA and rRNA base
modification].
Length = 426
Score = 110 bits (276), Expect = 3e-27
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 63 PKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 121
P ++R+N K D + L + + DL PD + L +H P G V +
Sbjct: 163 RPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTV 222
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q ++ VA LAP+ +LDAC+APG KT H+ L + ++VA ++++ R++R+ +
Sbjct: 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYEN 281
Query: 182 IK-LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 240
+K L E GD + ILLD CS +G D
Sbjct: 282 LKRLGLTIKAETKDGDGRGPSQWAEN-EQFDRILLDAPCSATGVIRRHPD-------IKW 333
Query: 241 TADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG 300
P ++ L +L + A+ L G +VY+TCS+ EN + IK+ L F
Sbjct: 334 LRKPRDIAELAELQSEILDAIWPLLKTGGT--LVYATCSVLPEENSEQIKAFLQEHPDFP 391
Query: 301 FQLATPFPNGTAEASQFL 318
F+ Q L
Sbjct: 392 FEKTGTPEQVRDGGLQIL 409
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 105 bits (263), Expect = 3e-26
Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 62 VPKPRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCV 119
P +R N LK S + L V + L + + P NG V
Sbjct: 7 CSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAV 66
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
+Q +S + A AL P+ +LD C+APG KT H+A LMK +G +VA + NK+R++R+
Sbjct: 67 TVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVY 126
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239
I+ G NI V GD +D K E ILLD CSG+G D
Sbjct: 127 ANIQRLGVFNIIVQEGDARQIDQK-LLGGEFDRILLDAPCSGTGVIRRDPD-------IK 178
Query: 240 HTADPTEMERLNKLSAFQKKALR--HALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
++ +L +L QK+ L+ L PG +VYSTCS+ ENE VIK L
Sbjct: 179 WLRREADIAQLAEL---QKELLKAAWDLVKPG-GVLVYSTCSVLPEENEAVIKYFL 230
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 105 bits (264), Expect = 2e-25
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 69 RVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLH-VHPLIVNGCVFLQGKASS 127
R+N LK + + V + +P+ + D P + G V +Q +
Sbjct: 184 RINRLKTTPEKFLAAPADASVTFEKSGLPNFFL---SKDFSLFEPFLKLGLVSVQNPTQA 240
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL--NK-ERVRRLKDTIKL 184
+ L P+PG VLD C+APG K+ +A LM+ +G+I A + K E++R +
Sbjct: 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-- 298
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD- 243
G IE + GD + P++ AILLD C+G+G R A+
Sbjct: 299 -GITIIETIEGDARSFSPEEQP----DAILLDAPCTGTGVLGRR-------------AEL 340
Query: 244 --PTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
E+L +L Q + L HA S PG +VY+TCSI ENE I++ L
Sbjct: 341 RWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATCSIEPEENELQIEAFL 393
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 93.0 bits (232), Expect = 4e-21
Identities = 94/289 (32%), Positives = 128/289 (44%), Gaps = 61/289 (21%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ--------------FVVQKDD 94
S++D +A Q P R +RVNTLK+ V L+L F +++DD
Sbjct: 21 SMDDFIAACQRP---LRRSIRVNTLKISVA-DFLQLMAPYGWTLTPIPWCEEGFWIERDD 76
Query: 95 LVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK-VLDACSAPGN 150
LP G H+ +G ++Q +ASSM VAA A + VLD +APG+
Sbjct: 77 EDA----LPLGNTAEHL-----SGLFYIQ-EASSMLPVAALFADDNAPQRVLDMAAAPGS 126
Query: 151 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKD 204
KT +AALM +G IVA E + RV+ L I G +N+ + H G L
Sbjct: 127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL------ 180
Query: 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS-GHTADPTEMERLNKLSAFQKKALRH 263
AILLD CSG GT R D + S + +R SAF H
Sbjct: 181 --PETFDAILLDAPCSGEGTV--RKDPDALKNWSPESNLEIAATQRELIESAF------H 230
Query: 264 ALSFPGVERVVYSTCSIHQVENEDVI---KSVLPIAMSFGFQLATPFPN 309
AL G +VYSTC++++ EN+ V K P A+ F L FP
Sbjct: 231 ALKPGGT--LVYSTCTLNREENQAVCLWLKETYPDAVEF-EPLGDLFPG 276
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 90.7 bits (225), Expect = 2e-20
Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 58/296 (19%)
Query: 9 LHTNLRHPLWPVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 68
LH HP W V FL +++ +M Q P P +
Sbjct: 128 LHLKYSHPKWLVNYWRSFLPE------------------EAVLRIMEWNQEP---LPTML 166
Query: 69 RVNTLKMDVDSAVLELGKQFVVQKDDLVP------DLLILPPGCDLHVHPLIVNGCVFLQ 122
RVN+L + + + L ++ + VP L++ G +++ +I +G +Q
Sbjct: 167 RVNSLAITREEVIKILAEE----GTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQ 222
Query: 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182
G++S +V + +PG +VLD C+APG KT +A LMK +GKI+A ++++E+++ ++
Sbjct: 223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA 282
Query: 183 KLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 242
K ++IE+ D L + IL+D C+ GTA
Sbjct: 283 KRLKLSSIEIKIADAERL--TEYVQDTFDRILVDAPCTSLGTARN--------------- 325
Query: 243 DPTEMERLNK-----LSAFQKKALRHA---LSFPGVERVVYSTCSIHQVENEDVIK 290
P + R+NK LS Q + + A L G+ ++YSTC++ + EN +V+K
Sbjct: 326 HPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI--LLYSTCTVTKEENTEVVK 379
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 72.5 bits (179), Expect = 3e-14
Identities = 70/257 (27%), Positives = 103/257 (40%), Gaps = 75/257 (29%)
Query: 69 RVNTLKMDVDS--AVL-ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 125
RVN D+ A+L E G + + PD + L +H P G V +Q A
Sbjct: 175 RVNRRHHSRDAYLALLAEAGIE--AFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAA 232
Query: 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-L 184
+ + A LAP+ G +VLDAC+APG KT H+ L ++VA +++ +R+ R+++ ++ L
Sbjct: 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQA-QVVALDIDAQRLERVRENLQRL 291
Query: 185 SGAANIEVLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGTA------------- 225
A V+ GD + P D ILLD CS +G
Sbjct: 292 GLKA--TVIVGDARDPAQWWDGQPFD-------RILLDAPCSATGVIRRHPDIKWLRRPE 342
Query: 226 ---------AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 276
+E LD L P G T ++Y+
Sbjct: 343 DIAALAALQSEILDALWPLLKPGGT-------------------------------LLYA 371
Query: 277 TCSIHQVENEDVIKSVL 293
TCSI ENE IK+ L
Sbjct: 372 TCSILPEENEQQIKAFL 388
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 47.4 bits (113), Expect = 4e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLD G + LA+ ++ +++ + + A N+EVL GD
Sbjct: 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
L P+ I+ DP R
Sbjct: 59 LPPEADE--SFDVIISDPPLHHLVEDLARF 86
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
PG +VLD G+ + LA L G ++ +L+ E + ++ KL+ I + GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 197 FLNLDPKDPAY 207
+ +
Sbjct: 60 APDALDLLEGF 70
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 47.6 bits (114), Expect = 2e-06
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ + L KPG KVLD G+ + LA G G++V ++++ + ++ +K G
Sbjct: 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKGV 100
Query: 188 ANIEVLHGDFLNL 200
N+E + GD NL
Sbjct: 101 QNVEFVVGDAENL 113
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 44.4 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A +PG VL+ G T L K ++ A E++ RL++ K + A
Sbjct: 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAK---RVTAIEIDPRLAPRLRE--KFAAAD 59
Query: 189 NIEVLHGDFLNLD-PKDPAY 207
N+ V+HGD L D PK Y
Sbjct: 60 NLTVIHGDALKFDLPKLQPY 79
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ + VL+ G T LA K ++VA E++ +RL++ KL+
Sbjct: 21 IVDKANLQESDTVLEIGPGKGALTTELAKRAK---QVVAIEIDPRLAKRLQE--KLALHP 75
Query: 189 NIEVLHGDFLNLD-PKD 204
N+EV+H DFL PKD
Sbjct: 76 NVEVVHQDFLKFSFPKD 92
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 42.7 bits (101), Expect = 3e-05
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ L +PG + D + G+ T+ A L+ G++ A E N E + ++ ++ G +NI
Sbjct: 13 SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 236
++ GD + A+ + GSG + + +
Sbjct: 72 VIVEGDAPEAPEDLL--PDPDAVFV----GGSGGLLQEILEAVERR 111
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 41.7 bits (98), Expect = 6e-05
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 196
G +VLD + G + A ++V EL+ E + + L+G A + V+ GD
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGP-DARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 197 FLNLDPKDPAYSEVRAILLDP 217
L +L +P
Sbjct: 60 ARELLELPDG--SFDLVLGNP 78
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 42.4 bits (100), Expect = 1e-04
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 125 ASSMVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
A M A L KPG +VL+ S G T A ++ G +V+ E E V +
Sbjct: 58 APHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRN 117
Query: 182 IKLSGAANIEVLHGD 196
++ G N+ V+ GD
Sbjct: 118 LEKLGLENVIVVVGD 132
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 41.3 bits (97), Expect = 1e-04
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194
K G KVLD G T LA + ++V ++++E + + K+ K G N+E +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 195 GDFLNLD 201
GD L
Sbjct: 61 GDIEELP 67
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 40.5 bits (95), Expect = 5e-04
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 193
K G K LD G+ T L+ GK+V ++N+ ++ + K G NIE L
Sbjct: 44 GVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
Query: 194 HGDFLNLDPKDPAY 207
G+ L +D ++
Sbjct: 104 QGNAEELPFEDDSF 117
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 40.7 bits (96), Expect = 5e-04
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 113 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELN 171
+I + C F G + ++AA ++LD + GN + L A K KIV E+
Sbjct: 20 IIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGA--GNGALGLLLAQRTEKAKIVGVEIQ 77
Query: 172 KERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
+E + + L+ I+V+ D K ++ I+ +P
Sbjct: 78 EEAAEMAQRNVALNPLEERIQVIEADIKEF-LKALVFASFDLIICNP 123
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 39.9 bits (94), Expect = 5e-04
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ L P+PG ++ D + G+ T+ A G+++A E ++E + ++ G N+
Sbjct: 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNL 86
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239
EV+ GD P AI + G G E L+ G
Sbjct: 87 EVVEGDAPEALPD---LPSPDAIFI----GGGGNIEEILEAAWERLKPG 128
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 39.4 bits (92), Expect = 0.002
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
V+DA G T+ LA K +V E+ E V + + +L+G AN+E L G
Sbjct: 295 LVVDAYCGVGTFTLPLA---KQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351
Query: 200 LDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL 232
+ PK P A +LLDP G AAE L +
Sbjct: 352 VLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTI 383
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 38.2 bits (90), Expect = 0.003
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKD 180
L +PG KVLD G+ + LA + G++V + + +E++R
Sbjct: 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR---- 97
Query: 181 TIKLSGAANIEVLHGDFLNL 200
L + N+E + GD L
Sbjct: 98 --DLGLSGNVEFVQGDAEAL 115
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 36.8 bits (86), Expect = 0.007
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKL 184
S ++A K G +VL+ G + +A + G K+V ++N V K KL
Sbjct: 12 SFLLAENAVDKKGDRVLEV----GTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKL 67
Query: 185 SG--AANIEVLHGD-FLNLDPKD 204
+ +EV+ D F
Sbjct: 68 NNIRNNGVEVIRSDLFEPFRGDK 90
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 36.8 bits (86), Expect = 0.010
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A PG VL+ G T L ++ A E+++ LK+ + +
Sbjct: 22 IVEAANISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKE--RFAPYD 76
Query: 189 NIEVLHGDFLNLDPKDPAYS 208
N+ V++GD L D A
Sbjct: 77 NLTVINGDALKFDFPSLAQP 96
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 36.1 bits (84), Expect = 0.014
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
G ++A PK ++L+ +A G + +A + G++ E ++ER ++
Sbjct: 47 TGALLRLLARLSGPK---RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAREN 103
Query: 182 IKLSGAAN-IEVLHGD 196
+ +G + IE+L G
Sbjct: 104 LAEAGVDDRIELLLGG 119
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 35.2 bits (82), Expect = 0.019
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 119 VFLQGK---ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERV 175
VF G+ S ++ + L G KVLD G LA ++ ++N +
Sbjct: 10 VFSHGRLDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAK-RSPDLEVTMVDINARAL 68
Query: 176 RRLKDTIKLSGAANIEVLHGD 196
+ + +G N EV D
Sbjct: 69 ESARANLAANGLENGEVFWSD 89
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 35.1 bits (81), Expect = 0.025
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
KPG V+D +APG + + + KG+++AC D + + ++ L G
Sbjct: 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIAC-----------DILPMDPIVGVDFLQG 98
Query: 196 DF 197
DF
Sbjct: 99 DF 100
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 35.8 bits (83), Expect = 0.027
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 155 LAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGD 196
+ KG+ K+ A ++N + V LK+ I+L+ +E + GD
Sbjct: 204 IPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD 246
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 34.6 bits (80), Expect = 0.037
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH 194
K G V+D + G ++ +A K K ++ A ELN E V+ LK+ IKL+ I +
Sbjct: 99 KEGEVVVDMFAGIGPFSIPIAKHSKAK-RVYAVELNPEAVKYLKENIKLNKVEGVISPIL 157
Query: 195 GD 196
GD
Sbjct: 158 GD 159
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 34.5 bits (80), Expect = 0.039
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 125 ASSMVA---AALAPKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKD 180
A MVA L KPG +VL+ + G + AA++ + G++V+ E +E + +
Sbjct: 57 APHMVARMLQLLELKPGDRVLEIGTGSG----YQAAVLARLVGRVVSIERIEELAEQARR 112
Query: 181 TIKLSGAANIEVLHGD 196
++ G N+ V HGD
Sbjct: 113 NLETLGYENVTVRHGD 128
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 34.0 bits (78), Expect = 0.052
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
KPG VLD +APG + + GKG+++A +L + N++ + G
Sbjct: 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ-----------PMKPIENVDFIRG 79
Query: 196 DF 197
DF
Sbjct: 80 DF 81
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 34.1 bits (79), Expect = 0.052
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
KPG V+D +APG + A + GKIVA ++ +K + L G
Sbjct: 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKP--IPGVIFLQG 92
Query: 196 DFLN 199
D +
Sbjct: 93 DITD 96
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 34.4 bits (79), Expect = 0.055
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 128 MVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
MVA L KPG KVL+ + G + LA ++ G +V+ E E + + ++
Sbjct: 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
Query: 185 SGAANIEVLHGD 196
G N+ V+ GD
Sbjct: 125 LGLDNVIVIVGD 136
>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
methyltransferase; Provisional.
Length = 382
Score = 34.9 bits (81), Expect = 0.057
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 129 VAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
V A PK P VLDA SA G + + AL G K+ ++N + V +K ++L+G
Sbjct: 48 VLRAFGPKLPRESVLDALSASGIRGIR-YALETGVEKVTLNDINPDAVELIKKNLELNGL 106
Query: 188 ANIEVLHGDF 197
N +V + D
Sbjct: 107 ENEKVFNKDA 116
>gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase.
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA.
The TRM1 gene of Saccharomyces cerevisiae is necessary
for the N2,N2-dimethylguanosine modification of both
mitochondrial and cytoplasmic tRNAs. The enzyme is found
in both eukaryotes and archaebacteria.
Length = 375
Score = 34.7 bits (80), Expect = 0.058
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
G VLDA SA G + + A + G ++ A +++ + V +K+ +KL+ NI V++G
Sbjct: 48 GRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVING 107
Query: 196 DFLN--LDPKDPAYSEVRAILLDPSCSGSGTAAERLD 230
D N + + I LDP G+ A LD
Sbjct: 108 DDANMLMRENHRRFD---VIDLDP----FGSPAPFLD 137
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 34.2 bits (79), Expect = 0.085
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 38/150 (25%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
L G +VLD G + LA K K+ E++ E V ++ +G
Sbjct: 285 ALEWLELAGGERVLDLYCGVGTFGLPLA---KRVKKVHGVEISPEAVEAAQENAAANGID 341
Query: 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEME 248
N+E + GD P + +++DP +G AD ++
Sbjct: 342 NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--------------------ADREVLK 381
Query: 249 RLNKLSAFQKKALRHALSFPGVERVVYSTC 278
+L KL +R+VY +C
Sbjct: 382 QLAKL---------------KPKRIVYVSC 396
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 33.4 bits (77), Expect = 0.10
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
K + + A L PG +VL+A + G T +LA + +G + E+ ++ + ++ +
Sbjct: 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS 140
Query: 184 LSGAAN-IEVLHGDFLN-LDPKDPAYSEVRAILLD 216
G + + + GD +D +D V A+ LD
Sbjct: 141 EFGLGDRVTLKLGDVREGIDEED-----VDAVFLD 170
>gnl|CDD|236925 PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.
Length = 156
Score = 32.6 bits (75), Expect = 0.14
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIV-ACELN 171
APK GW V+D SAP N V + L + IV A ++
Sbjct: 29 APKGGWVVIDGGSAPENDIVAIRELRPERLLIVDATDMG 67
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 33.0 bits (75), Expect = 0.17
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201
+++A E + +R R ++ + + G N EV+ GD + D
Sbjct: 56 RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD 93
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 32.4 bits (75), Expect = 0.23
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 128 MVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185
+V AAL K +VLD + G + LA ++ A +++ E + +
Sbjct: 76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDA-RVTAVDISPEALAVARKNAARL 134
Query: 186 GAANIEVLHGDFL 198
G N+E L D+
Sbjct: 135 GLDNVEFLQSDWF 147
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 32.3 bits (74), Expect = 0.23
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
A ++ A L P G +VLD C+ G V AA G G + A ++++ VR + L
Sbjct: 26 ADALAAEGLGP--GRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALL 81
Query: 185 SGAANIEVLHGDFL 198
+G +++V GD+
Sbjct: 82 AG-VDVDVRRGDWA 94
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 31.3 bits (72), Expect = 0.50
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
L+ G V +A + E+++ V + I+ G N+ +L GD
Sbjct: 44 HLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGD 98
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 31.1 bits (71), Expect = 0.50
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 125 ASSMVA---AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
A MVA L K G KVL+ + G +A ++ GK+V E E + K T
Sbjct: 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120
Query: 182 IKLSGAANIEVLHGD 196
+K G N+EV+ GD
Sbjct: 121 LKKLGYDNVEVIVGD 135
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 31.5 bits (72), Expect = 0.53
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLD 201
GN T L L K K++A E++ V LK + S A +EV+ GD L +
Sbjct: 48 GNLTEKL--LQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 31.3 bits (71), Expect = 0.53
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
+ G LD C + ++ LA + +G ++ + ++ + + +K +G N+E++HG
Sbjct: 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG 103
Query: 196 DFLNLDPKDPAYSEV 210
+ + L D ++ V
Sbjct: 104 NAMELPFDDNSFDYV 118
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 30.8 bits (70), Expect = 0.56
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194
V+D + G+ +++ A +G+++A E + L++ +KL+ N+ +L+
Sbjct: 2 VIDVGANIGDFSLY-FARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLN 54
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein.
Members of this protein family are FHA
(forkhead-associated) domain-containing proteins that
are part of type VI secretion loci in a considerable
number of bacteria, most of which are known pathogens.
Species include Pseudomonas aeruginosa PAO1, Aeromonas
hydrophila, Yersinia pestis, Burkholderia mallei, etc
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 396
Score = 31.6 bits (72), Expect = 0.57
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 186 GAANIEVL-HGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADP 244
G N L GD L L E+R L DP S + R D LP+ T DP
Sbjct: 79 GRGNPVRLEQGDRLRLGD-----YEIRVSLGDPLVSRQ-ASESRADTSLPTAGGPPTPDP 132
Query: 245 TEMERLNKLSAFQKKALRHA 264
+ +L+ L A ++ L A
Sbjct: 133 APLAQLDPLKALDQEPLSAA 152
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 30.9 bits (70), Expect = 0.58
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE-RVRRLKDTIKLS 185
+M+ + P+PG K+L+ + G + A ++ +GK+ E+ KE + ++ +L
Sbjct: 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG 121
Query: 186 GAANIEVLHGD 196
+EV HGD
Sbjct: 122 YWGVVEVYHGD 132
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 31.4 bits (71), Expect = 0.65
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
G +VL+ G ++ ++ KG +V+ E +++ K ++ G N+ + GD
Sbjct: 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGD 139
>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 31.3 bits (72), Expect = 0.67
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 128 MVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
MVA A L P+PG +VLD GN T+ LA ++V E + V R ++ +
Sbjct: 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARR 341
Query: 185 SGAANIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL 232
+G N+ H + P A +LLDP +G AAE + L
Sbjct: 342 NGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQAL 387
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 30.5 bits (70), Expect = 0.97
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 157 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204
L++ K+ A E++++ L +T N+ ++ GD L +D +
Sbjct: 59 PLLERAAKVTAVEIDRDLAPILAETFAED---NLTIIEGDALKVDLSE 103
>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 380
Score = 30.8 bits (70), Expect = 0.98
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
V A +VLDA SA G + + A+ G K+V +++ + V +K+ ++L+
Sbjct: 44 VLKAFGKLLPKRVLDALSATGIRGIR-YAVETGVVKVVLNDISPKAVELIKENVRLNSGE 102
Query: 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 230
+ EV++ D L + +V I +DP G+ A LD
Sbjct: 103 DAEVINKDANALLHELHRAFDV--IDIDP----FGSPAPFLD 138
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 30.7 bits (70), Expect = 0.99
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 167
LA +PG +VLD PGN LA + +G++V
Sbjct: 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVG 49
>gnl|CDD|217098 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/transferase
N-terminal domain. This family contains several enzymes
which take part in pathways involving acetyl-CoA.
Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
of acetate from acetyl-CoA, CoA transferase (CAT1)
EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
form acetyl-CoA.
Length = 198
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS--CSGSGT 224
A + K +R + + I++ G FL+ P+ A L P+ SG
Sbjct: 36 AKAIPKYLAKRKVELVNAKVKTFIDLAVGAFLSAGPEAEVTDWKDAFLYRPAPKQSGELG 95
Query: 225 AA---ERLDHLLPSHAS 238
+ L + H S
Sbjct: 96 RKAINQGLASFVDKHLS 112
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 29.9 bits (68), Expect = 1.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A G VL+ G T L K K+ A E+++ RL+ LS
Sbjct: 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDRRLAERLRK--LLSLYE 75
Query: 189 NIEVLHGDFLNLD 201
N+E++ GD L +D
Sbjct: 76 NLEIIEGDALKVD 88
>gnl|CDD|227034 COG4690, PepD, Dipeptidase [Amino acid transport and metabolism].
Length = 464
Score = 30.1 bits (68), Expect = 1.8
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 180 DTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS 238
I +G N V FLN D K Y+ + P + E + +L H
Sbjct: 230 SNIPDTGYNNPRVWIVQKFLNPDVKVDPYNSDLPFIQKPHRK---ISVEDVKFVLRDHYE 286
Query: 239 GHTADPTEME 248
G DP
Sbjct: 287 GTNYDPYGSH 296
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 29.4 bits (66), Expect = 2.0
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSGAANIEVLHGD 196
G +LD G+ TV + L+ GK+ A + +++ + + K NI ++ G+
Sbjct: 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100
Query: 197 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPS 235
+ + I + G G+ E+L ++ +
Sbjct: 101 APEILFT--INEKFDRIFI-----GGGS--EKLKEIISA 130
>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional.
Length = 395
Score = 29.8 bits (67), Expect = 2.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 299 FGFQLATPFPNGTAEASQFLKALSIY 324
F F LA G A+A FL AL I+
Sbjct: 311 FSFVLAAGPEKGKAKAHAFLDALEIF 336
>gnl|CDD|217132 pfam02597, ThiS, ThiS family. ThiS (thiaminS) is a 66 aa protein
involved in sulphur transfer. ThiS is coded in the
thiCEFSGH operon in E. coli. This family of proteins
have two conserved Glycines at the COOH terminus.
Thiocarboxylate is formed at the last G in the
activation process. Sulphur is transferred from ThiI to
ThiS in a reaction catalyzed by IscS. MoaD, a protein
involved sulphur transfer in molybdopterin synthesis, is
about the same length and shows limited sequence
similarity to ThiS. Both have the conserved GG at the
COOH end.
Length = 70
Score = 27.2 bits (61), Expect = 3.1
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189
A L G ++ P TV L + + VA +N E V R + L
Sbjct: 5 AELRELAGKELEL----PEGATVAELLEALGLNPERVAVAVNGEIVPRSQADTPLKDGDE 60
Query: 190 IEVLH 194
+ ++
Sbjct: 61 VAIIP 65
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 29.2 bits (66), Expect = 3.2
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 240 HTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STC 278
TA E+L K+ALR L PG+ V STC
Sbjct: 9 KTAPVELREKLAFSEEELKEALRRLLEKPGISEAVLLSTC 48
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 28.0 bits (63), Expect = 4.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 171
L P G VLD +APG + L G GK+VA +L
Sbjct: 18 LKPGKGKTVLDLGAAPGGFSQVLLERG-GAGKVVAVDLG 55
>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase. The
sequences in this family are members of the pfam01370
superfamily of NAD-dependent epimerases and dehydratases
typically acting on nucleotide-sugar substrates. The
genes of the family modeled here are generally in the
same locus with genes involved in the biosynthesis and
elaboration of hopene, the cyclization product of the
polyisoprenoid squalene. This gene and its association
with hopene biosynthesis in Zymomonas mobilis has been
noted in the literature where the gene symbol hpnA was
assigned. Hopanoids are known to be components of the
plasma membrane and to have polar sugar head groups in
Z. mobilis and other species.
Length = 328
Score = 28.4 bits (64), Expect = 4.9
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 241 TADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 275
DP EM N L A GVERVVY
Sbjct: 79 APDPEEMYAANVEGTR---NLLRAALEAGVERVVY 110
>gnl|CDD|113159 pfam04378, DUF519, Protein of unknown function (DUF519). Bacterial
family of unknown function, possibly secreted. The
structure solved for the hypothetical protein Lpl1258 is
putatively involved in the catabolism of external DNA.
Length = 245
Score = 28.5 bits (64), Expect = 5.1
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 156 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA-IL 214
L++ + ++V CEL+ LK +G + V D E R +L
Sbjct: 73 RQLLRAQDRLVLCELHPSDYPLLKAE--FAGDRRVRVHQADGFAALKAFLPPKERRGLVL 130
Query: 215 LDP 217
+DP
Sbjct: 131 IDP 133
>gnl|CDD|218494 pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N-terminal domain.
Length = 150
Score = 27.9 bits (63), Expect = 5.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 235 SHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STC 278
+H TA E+L ++AL + PGV V STC
Sbjct: 4 NH---KTAPVEIREKLAFSDEELEEALEELKASPGVSEAVILSTC 45
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 28.7 bits (65), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 282 QVENEDVIKSVLPIAMSFGFQLATPFP 308
+ N+DVI S LP SFG + P
Sbjct: 819 NLRNDDVILSSLPFFHSFGLTVTLWLP 845
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 28.2 bits (64), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 186 GAANI-EVLHGDFLNLDPKDP 205
GAA+I VL FL DPK+P
Sbjct: 36 GAADIAYVLWTRFLRHDPKNP 56
>gnl|CDD|224615 COG1701, COG1701, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 256
Score = 28.1 bits (63), Expect = 6.6
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 28/84 (33%)
Query: 111 HPLI-VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 169
HP+I VNG V AAL P+ + V LA K ++
Sbjct: 71 HPVISVNGNV-----------AALVPE--------------EVVELAEATGAKLEVNLFY 105
Query: 170 LNKERVRRLKDTIKLSGAANIEVL 193
+ERVR++ + +K GA EVL
Sbjct: 106 RTEERVRKIAEVLKEHGA--KEVL 127
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 28.2 bits (63), Expect = 6.7
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 19/97 (19%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--- 186
+ K G +VLD C+ G + AL +G ++ E + + ++L+
Sbjct: 127 VELVKVKRGERVLDTCTGLGYTA--IEALERGAIHVITVEKD-------PNVLELAKLNP 177
Query: 187 ------AANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
I+++ GD + AI+ DP
Sbjct: 178 WSRELFEIAIKIILGDAYEVVKDFDD-ESFDAIIHDP 213
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 27.7 bits (62), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 163 GKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGD 196
GKI AC+++ E I+ +G A+ I GD
Sbjct: 70 GKITACDIDPEAYEIGLPFIQKAGVADKISFRLGD 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,427,607
Number of extensions: 1694342
Number of successful extensions: 1625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 92
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)