RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019692
(337 letters)
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 270 bits (693), Expect = 7e-90
Identities = 107/253 (42%), Positives = 143/253 (56%), Gaps = 27/253 (10%)
Query: 60 PDVPKPRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLL 100
P PR+VRVNTLK D V +Q D L+P+LL
Sbjct: 6 PASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELL 65
Query: 101 ILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK 160
+ P DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K
Sbjct: 66 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK 125
Query: 161 GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 220
+GKI A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCS
Sbjct: 126 NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCS 185
Query: 221 GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI 280
GSG + +L+ A RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+
Sbjct: 186 GSGMPSRQLEEP--------GAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSL 237
Query: 281 HQVENEDVIKSVL 293
Q ENEDV++ L
Sbjct: 238 CQEENEDVVRDAL 250
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 181 bits (461), Expect = 2e-55
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 21/238 (8%)
Query: 61 DVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCV 119
K +++RVNTLK++ + L + V++K L + + P + G
Sbjct: 6 KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYY 65
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
Q +S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK
Sbjct: 66 MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR-AILLDPSCSGSGTAAERLDHLLPSHAS 238
I G N +++ D ILLD CSG+ +
Sbjct: 126 SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK----------- 174
Query: 239 GHTADPT-EMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
+ E + S QK+ + + +VYSTCS+ ENE+VIK +L
Sbjct: 175 ----NRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYSTCSMEVEENEEVIKYIL 227
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 180 bits (458), Expect = 1e-54
Identities = 72/247 (29%), Positives = 112/247 (45%), Gaps = 18/247 (7%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPD-LLILPPGCDL 108
E + + + + P PR RVNTLK+ V V L K+ F ++ + + +
Sbjct: 30 ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 89
Query: 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 168
P + G +++Q +S AL PKPG V D +APG KT +LA LM+ G I A
Sbjct: 90 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 149
Query: 169 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
++++ R+R + + G N+ + H L++ + ILLD C+GSGT +
Sbjct: 150 DVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GELNVE--FDKILLDAPCTGSGTIHKN 206
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENE 286
+ M+ + Q + L L PG +VYSTCS+ ENE
Sbjct: 207 PE----------RKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG-ILVYSTCSLEPEENE 255
Query: 287 DVIKSVL 293
VI+ L
Sbjct: 256 FVIQWAL 262
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 177 bits (450), Expect = 6e-52
Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 63 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 121
+ +RVNTLK +V+ + EL + V + + VP +L + + G + +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q +AS++ + L PKPG V+D +APG KT HLA LMK KGKI A +++K R++RLKD
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 182 IKLSGAANIEVLHGDFLNLDPKDPAYSEVRA--ILLDPSCSGSGTAAERLD---HLLPSH 236
+K G ++ L D E A +LLD C+ SGT + + L
Sbjct: 304 VKRMGIKIVKPLVKDARKAPEI---IGEEVADKVLLDAPCTSSGTIGKNPELRWRLRE-- 358
Query: 237 ASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
+++N++S Q++ L A PG R++Y+TCSI + ENE I+ L
Sbjct: 359 -----------DKINEMSQLQRELLESAARLVKPG-GRLLYTTCSIFKEENEKNIRWFL 405
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 172 bits (438), Expect = 4e-50
Identities = 71/279 (25%), Positives = 109/279 (39%), Gaps = 32/279 (11%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD-LLILPPGCDLH 109
+ AL Q + R N LK V +Q + L G
Sbjct: 26 DFFSALEQGS---VKKGFRWNPLKPAGLDMVQTY-HSEELQPAPYSNEGFLGTVNG---- 77
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 169
L G + Q ++ +V A A KPG KVLD C+APG K+ LAA MKGKG +V E
Sbjct: 78 KSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNE 137
Query: 170 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
+ +R + L + I+ G +N V + L P + + I++D CSG G R
Sbjct: 138 IFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD--RIVVDAPCSGEGMF--RK 193
Query: 230 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENED 287
D P+ T E Q++ L A+ +++YSTC+ ENE+
Sbjct: 194 D---PNAIKEWT-----EESPLYCQKRQQEILSSAIKMLKNK-GQLIYSTCTFAPEENEE 244
Query: 288 VIKSVL--------PIAMSFGFQLATPFPNGTAEASQFL 318
+I ++ I ++ A + +
Sbjct: 245 IISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTI 283
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 168 bits (428), Expect = 1e-48
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 22/259 (8%)
Query: 44 RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLIL 102
R + S P R +RVNTLK+ V + + + + +
Sbjct: 17 REAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWI 76
Query: 103 PPGCDLHV----HPLIVNGCVFLQGKASSMVAAALA--PKPGWKVLDACSAPGNKTVHLA 156
+ + ++G ++Q +S + AAL +V+D +APG+KT ++
Sbjct: 77 ERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIS 136
Query: 157 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216
A M +G I+A E + RV+ L I G +N+ + H D P + AILLD
Sbjct: 137 ARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD--AILLD 194
Query: 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVV 274
CSG G R D P + E +++A Q++ + A PG +V
Sbjct: 195 APCSGEGVV--RKD---PDALKNWS-----PESNQEIAATQRELIDSAFHALRPGG-TLV 243
Query: 275 YSTCSIHQVENEDVIKSVL 293
YSTC+++Q ENE V +
Sbjct: 244 YSTCTLNQEENEAVCLWLK 262
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 162 bits (412), Expect = 2e-46
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 18/235 (7%)
Query: 61 DVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
+ + +RVNTLK+ ++ + ++ + P HP G +
Sbjct: 27 EGKRTYGLRVNTLKLPPEAFQRISP--WPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E++ +RVR L +
Sbjct: 85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 240
++ GA V L Y +LLD CSG G + +
Sbjct: 145 NVERWGAPLA-VTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMFRKDRE---------- 191
Query: 241 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
A +++ QK L A PG +VYSTC+ ENE V+ L
Sbjct: 192 AARHWGPSAPKRMAEVQKALLAQASRLLGPG-GVLVYSTCTFAPEENEGVVAHFL 245
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 154 bits (391), Expect = 2e-43
Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 21/244 (8%)
Query: 53 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVH 111
+ A Q P P ++R+N DS + L + PD + L +H
Sbjct: 165 VEANNQRP----PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHAL 220
Query: 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 171
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + ++VA +++
Sbjct: 221 PGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDID 279
Query: 172 KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 231
++R+ R+ D +K G V GD ILLD CS +G D
Sbjct: 280 EQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWCGEQQ-FDRILLDAPCSATGVIRRHPD- 336
Query: 232 LLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVI 289
++ L +L Q + L G +VY+TCS+ EN I
Sbjct: 337 ------IKWLRRDRDIPELAQL---QSEILDAIWPHLKTG-GTLVYATCSVLPEENSLQI 386
Query: 290 KSVL 293
K+ L
Sbjct: 387 KAFL 390
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 53.9 bits (130), Expect = 1e-08
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
V K G VLD + G +L+ ++ KGK+ A ++ +E V + + G
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 189 NIEVLHGDFLNL 200
N+EVL + +
Sbjct: 89 NVEVLKSEENKI 100
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 52.4 bits (125), Expect = 5e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
++ + + +S + +PG +L+ GN + ++
Sbjct: 73 FIVSDFSPMYFGRVI-RRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYA 131
Query: 159 MKGKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKDPA 206
+ GKG + E +++ +++ D + N+ D +
Sbjct: 132 LNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY 180
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 52.2 bits (125), Expect = 5e-08
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
++ PG KVL+A G +TV LA +I + +++ E + + ++ + +G
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNG 85
Query: 187 AANIEVLHGDFLNLD 201
N++ L + +L
Sbjct: 86 IKNVKFLQANIFSLP 100
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 50.5 bits (121), Expect = 7e-08
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ALAPKP + D G+ + + V E+++ER R+ G ++
Sbjct: 19 SALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDR 77
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 234
+ P I + + G A L
Sbjct: 78 IAVQQGAPRAFDDVPD--NPDVIFIGGGLTAPGVFAAAWKRLPV 119
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 51.5 bits (123), Expect = 1e-07
Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 98 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 157
+ IL P ++ + G + K ++++ A PG +++A G T+ LA
Sbjct: 55 EFKILRPRIVDYLDKM-KRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLAN 113
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
++ +G++V+ E+ ++ + + IK +G + + + ++ V L P
Sbjct: 114 IVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQP 173
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 49.8 bits (119), Expect = 3e-07
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+G + + A K +VLD + G+ A + K+VA +L ++ ++ +
Sbjct: 22 KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAF 78
Query: 182 IKLSGAANIEVLHGDFLNL 200
I+ +G +E + GD +
Sbjct: 79 IEGNGHQQVEYVQGDAEQM 97
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 49.4 bits (118), Expect = 4e-07
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+ ++ + +VLD + G+ + + + + + + KE V
Sbjct: 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 62
Query: 182 IKLSGAANIEVLHGDFLNL 200
+ G N+ G +L
Sbjct: 63 AQEKGVENVRFQQGTAESL 81
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 47.8 bits (113), Expect = 1e-06
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
L+L P +V + G + K ++ + PG +VL+A + G T+ L
Sbjct: 62 FLVLRPLLVDYVM-SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA 120
Query: 159 MKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILL 215
+ G++++ E + + + N ++ D + + D + +L
Sbjct: 121 VGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDML 180
Query: 216 DP 217
P
Sbjct: 181 AP 182
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 48.0 bits (114), Expect = 2e-06
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
S +V ++D G + L L+ K + + + ++ +L
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
Query: 185 SGAANIEVLHGDFLNLDPKD 204
+ E L GD ++ D
Sbjct: 70 LP-YDSEFLEGDATEIELND 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 2e-06
Identities = 54/377 (14%), Positives = 104/377 (27%), Gaps = 125/377 (33%)
Query: 10 HTNLRH----P--LWPVGD--AEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALY--- 57
H +L H P + + E+F L + A ++ + +L+ +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-----DEPTTPAELVGKFLGY 67
Query: 58 ---QTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKD--DLVPDLLILPPGCDLHVHP 112
++ +V L + E ++ D L LL +
Sbjct: 68 VSSLVEPSKVGQFDQV--LN----LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 113 LIVN---GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC- 168
LI N + + +AL A L A+ G+G
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSAL--------FRAVGE---GNAQLVAIFGGQGNTDDYF 170
Query: 169 -ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 227
EL R L T Y + L+ +AE
Sbjct: 171 EEL-----RDLYQT-------------------------YHVLVGDLIK-------FSAE 193
Query: 228 RLDHLLPSHASGHTADPTEMERLNKLSAFQKKA-------LRHA-LSFPGVERV----VY 275
L L+ + A+ + LN L + + L +S P + +
Sbjct: 194 TLSELIRTTLD---AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 276 STCSIHQVE--------------NEDVIKSVLPIAMSFGFQLATPFPNGTAEA--SQFLK 319
T + ++ ++ +V IA + + E+ K
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-IAET-----------DSWESFFVSVRK 298
Query: 320 ALSIYFEPIQWKTKKAF 336
A+++ F I + +A+
Sbjct: 299 AITVLFF-IGVRCYEAY 314
Score = 45.0 bits (106), Expect = 3e-05
Identities = 43/304 (14%), Positives = 90/304 (29%), Gaps = 97/304 (31%)
Query: 17 LWPVGD-AEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKM 75
+W + A+ G ++ + V N ++ ++ K + +R N M
Sbjct: 1645 VW---NRADNHFKDTYG---FSILDI-VINNPVNL----TIHFGG--EKGKRIRENYSAM 1691
Query: 76 DVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHV----HPLIVNGCVFLQGKASSMV 129
++ V K + K ++ L P +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT---------LMEKA 1742
Query: 130 AAALAPKPGWKVLDACSAPGNKTVH-L---AALMKGKGKIVACE---LNKERVRRLKDTI 182
A G DA A G H L AAL A ++ ++ +
Sbjct: 1743 AFEDLKSKGLIPADATFA-G----HSLGEYAAL--------ASLADVMS------IESLV 1783
Query: 183 KLSGAANIEVLH--GDFL-NLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL------ 232
++ + G + P+D S I ++P + + E L ++
Sbjct: 1784 EV--------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 233 ------------LPSH---ASGHTADPTEMERL-NKLSAFQKK-----ALRHALSFPGVE 271
+ + A+G ++ + N L+ + + L+ +LS VE
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRA---LDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 272 RVVY 275
++
Sbjct: 1893 GHLF 1896
Score = 37.0 bits (85), Expect = 0.010
Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 65/183 (35%)
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 250
L F + P +P +E A +P+ T AE + L G+ + E ++
Sbjct: 31 SQLQEQFNKILP-EP--TEGFAADDEPT-----TPAELVGKFL-----GYVSSLVEPSKV 77
Query: 251 NK--------LSAFQKKALR----HAL--SFPGVE-----------RVVYSTCSIHQVEN 285
+ L+ F+ L HAL + + + +
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 286 EDVIKSVL---------PIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQ--WKTKK 334
+ S L + FG Q G + YFE ++ ++T
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQ-------GNTDD---------YFEELRDLYQTYH 181
Query: 335 AFL 337
+
Sbjct: 182 VLV 184
Score = 31.2 bits (70), Expect = 0.61
Identities = 55/370 (14%), Positives = 106/370 (28%), Gaps = 135/370 (36%)
Query: 40 QLLVRNKVKSI-EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD 98
+LV + +K E L L +T + + + +++ ++ PD
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQG----LNILE---------WLENPSNTPD 227
Query: 99 ---LLILPPGCDLHVHPLI-----VNGCVFLQ-----------------GKASSMV-AAA 132
LL +P C PLI + V + G + +V A A
Sbjct: 228 KDYLLSIPISC-----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
+A W+ K + + + G V C E + ++E
Sbjct: 283 IAETDSWESFFVSVR---KAITVLFFI-G----VRC---YEAYPNTSLPPSIL-EDSLEN 330
Query: 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA--ERLDHL---LPSHA---------- 237
G P+ +L S S + ++ LP+
Sbjct: 331 NEG--------VPSP------ML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 238 -----SGHTADPTEMERLN----KLSA----------FQKKALRHALSF-PGVERVV--- 274
SG P + LN K A F ++ L+ + F P V
Sbjct: 375 KNLVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-----VASP 426
Query: 275 ----YSTCSIHQVENEDVIKSVLPIAMSFGFQLATP-FPNGTAE-----ASQFLKAL--S 322
+ + +D++K+ + + P + + + +
Sbjct: 427 FHSHLLVPASDLIN-KDLVKNNVSFNAK---DIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 323 IYFEPIQWKT 332
I P++W+T
Sbjct: 483 IIRLPVKWET 492
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 47.1 bits (111), Expect = 3e-06
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
+ AA + G + + P T L + + G ++ E+ + + I+
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIE 167
Query: 184 LSGAANIEVLHGDFLNLDPKD 204
G + V+ GD +D +
Sbjct: 168 GLGVDGVNVITGDETVIDGLE 188
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 45.7 bits (108), Expect = 4e-06
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLH 194
K G V+DA GN T LA+L+ G++ ++ + + + + ++
Sbjct: 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 195 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL 233
N+D + L SG + + R + +
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 45.9 bits (108), Expect = 5e-06
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
L K G ++L A G H++ ++ +G+I E +R L ++ NI
Sbjct: 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFP 130
Query: 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSG 221
+ GD + V + D +
Sbjct: 131 ILGDARFPEKYRHLVEGVDGLYADVAQPE 159
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 44.1 bits (104), Expect = 1e-05
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ L + + D + + ++ + LM G+I A E N + + ++D +K A N+
Sbjct: 34 SKLRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNV 92
Query: 191 EVLHGDF 197
++
Sbjct: 93 TLVEAFA 99
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 44.8 bits (105), Expect = 2e-05
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 17/175 (9%)
Query: 125 ASSMVAA---ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD- 180
+S V + + + G KV+D G + ALM + + E N E +
Sbjct: 78 SSGAVTSSYKSRFIREGTKVVDLTGGLG---IDFIALMSKASQGIYIERNDETAVAARHN 134
Query: 181 -TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC-SGSGTAAERLDHLLPSHAS 238
+ L+ ++ +L GDF P + I +DP+ SG+ + P
Sbjct: 135 IPLLLNEGKDVNILTGDFKEYLPLIKTFH-PDYIYVDPARRSGADKRVYAIADCEPD--- 190
Query: 239 GHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
L + L + + + +H V +K +L
Sbjct: 191 ----LIPLATELLPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKELL 241
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 44.3 bits (105), Expect = 2e-05
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 120 FL--QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177
L G ++ AA K VL+ GN TV L L K K++ +++ +
Sbjct: 24 LLKNPGILDKIIYAA-KIKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISE 79
Query: 178 LKDTIKLSGAANIEVLHGDFLNLD 201
+K G N+EV GD +
Sbjct: 80 VKKRCLYEGYNNLEVYEGDAIKTV 103
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 44.1 bits (104), Expect = 3e-05
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 123 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
++ A + + D G +T+ LA G++ + +
Sbjct: 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAG--HVTGQVTGLDFLSGFIDIFNR 87
Query: 181 TIKLSGAAN-IEVLHGDFLNLD 201
+ SG N + + G +L
Sbjct: 88 NARQSGLQNRVTGIVGSMDDLP 109
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 44.2 bits (104), Expect = 3e-05
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 1/118 (0%)
Query: 100 LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 159
IL P + + + K SS +A L K G +++D G LA +
Sbjct: 76 YILIPSLIDEIMN-MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV 134
Query: 160 KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
GK+ A E +E + + + G + ++ + + + DP
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 192
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 43.5 bits (102), Expect = 5e-05
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE---------RVRRLK 179
+A A KPG K+L+ G+ + LA + G + ++ +
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94
Query: 180 DTIKLSGAANIEVLHGDFLNLDP 202
L + +L P
Sbjct: 95 LAGPLGDRLTVHFNTNLSDDLGP 117
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 42.7 bits (100), Expect = 5e-05
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 127 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG-SGTAAERLDHLLPSHAS 238
++ NI + GD + +V I D + + + + L
Sbjct: 116 PIVE--ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGY 173
Query: 239 G 239
G
Sbjct: 174 G 174
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 42.8 bits (101), Expect = 6e-05
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
V+ A +LD + G + L +++++ + K+ + G
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKN--RFRGN 91
Query: 188 ANIEVLHGDFLNLDPKDP 205
++ + D+ D ++
Sbjct: 92 LKVKYIEADYSKYDFEEK 109
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 42.7 bits (100), Expect = 6e-05
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 98 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 157
+L + P + ++ + K +S + L PG +VL+A + G T+ LA
Sbjct: 58 ELSVHRPTLEEYLLH-MKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLAR 116
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH-GDFLNLDPKDPAYSEVRAILLD 216
+ KG + + E + + + ++ H G + ++ AY V L++
Sbjct: 117 AVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLME 176
Query: 217 P 217
P
Sbjct: 177 P 177
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 42.5 bits (100), Expect = 1e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189
+ P K++D CS GN + L + K KIV E+ + K ++ + +
Sbjct: 42 KFSYLPIRKGKIIDLCS--GNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED 99
Query: 190 -IEVLHGDFLNLDPKDPAYS 208
IE++ D + P
Sbjct: 100 QIEIIEYDLKKITDLIPKER 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 56/356 (15%), Positives = 98/356 (27%), Gaps = 124/356 (34%)
Query: 20 VGDAEK----FLM--LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV-RVNT 72
V + + FLM + Q ++ IE LY V V R+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVSRL-- 134
Query: 73 LKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 132
L+L + LL L P ++ + ++ G GK + +
Sbjct: 135 ------QPYLKLRQA-----------LLELRPAKNVLIDGVL--GS----GK-TWVALDV 170
Query: 133 LAPK------PG---WKVLDACSAPGNKTVHLAALM------------KGKGKIVACELN 171
W L C++P L L+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 172 KERVRRL------------------KDTIK--------LSGAANIEVLHGDFLN------ 199
+ +RRL L +V DFL+
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTH 288
Query: 200 --LDPKDPAYS--EVRAILLD---------PS--CSGS----GTAAERL-DHLLPSHASG 239
LD + EV+++LL P + + AE + D L
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL------- 341
Query: 240 HTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPI 295
T D + +KL+ + +L L P R ++ S+ + + +L +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNV-LE-PAEYRKMFDRLSVFP-PSAHIPTILLSL 394
Score = 41.0 bits (95), Expect = 5e-04
Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 28/153 (18%)
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY----SEVRAILLDPSC 219
I+ + RL T+ ++ + L ++ Y S ++ PS
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSM 107
Query: 220 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY--ST 277
+R D L + + RL ++AL V ++
Sbjct: 108 MTRMYIEQR-DRL---YNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNV--LIDGVLG 160
Query: 278 CSIHQVENEDVIKSVLPIAMSFGFQLATPFPNG 310
K+ + + + +++
Sbjct: 161 SG----------KTWVALDVCLSYKVQCKMDFK 183
Score = 37.1 bits (85), Expect = 0.009
Identities = 46/328 (14%), Positives = 87/328 (26%), Gaps = 94/328 (28%)
Query: 9 LHTNLRHPLWPVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 68
L + D + L +IQ L +LL + L+ L +V +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLVL---LNVQNAKAW 259
Query: 69 RV-----NTL-----KMDVDSAVLELGKQFVVQKDD--LVPD----LLI---------LP 103
L K D + L PD LL+ LP
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 104 P-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG----WK---------VLDACSA-- 147
+P + S++A ++ WK ++++
Sbjct: 320 REVLT--TNPRRL-----------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 148 -PG------------NKTVHL-AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV- 192
P + H+ L+ ++ ++ K V + + + +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 193 -----LHGDFLNLDPKDPAYSEVRAILLD----PSC-SGSGTAAERLDHLLPSHASGHTA 242
+ +L L K + ++D P LD SH H
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 243 DPTEMERLNKLS------AFQKKALRHA 264
+ ER+ F ++ +RH
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Score = 27.9 bits (61), Expect = 6.3
Identities = 37/271 (13%), Positives = 72/271 (26%), Gaps = 86/271 (31%)
Query: 86 KQFVVQKDDLVPDLLILPPGCDLHV--HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLD 143
+ ++ Q+D L D + +V + L+ + +P V
Sbjct: 110 RMYIEQRDRLYNDNQVFAK---YNVSRLQPYLK----LRQALLEL-------RPAKNV-- 153
Query: 144 ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLDP 202
+ + G GK + + K K+ I F LNL
Sbjct: 154 --------LIDG---VLGSGKTW---VALDVCLSYKVQCKMDF--KI------FWLNLK- 190
Query: 203 KDPAYSEVRAIL--LDPSCSGSGTAAERLDHLLPSHASGHTADPTEME----RLNKLSAF 256
+ +L L ++D S + + + L +L
Sbjct: 191 ---NCNSPETVLEMLQKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRRL--L 238
Query: 257 QKKALRHAL-------------SFPGVERVVYST--CSIHQVENEDVIKSVLPIAMSFGF 301
+ K + L +F +++ +T + + + S
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 302 QLATPFPNGTAEA-SQFLKALSIYFE--PIQ 329
TP E S LK L + P +
Sbjct: 299 ---TP-----DEVKSLLLKYLDCRPQDLPRE 321
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ G +D S PG ++ LA + I A + +K I +
Sbjct: 35 NIINRFGITAG-TCIDIGSGPGALSIALAK--QSDFSIRALDFSKHMNEIALKNIADANL 91
Query: 188 AN-IEVLHGDFLNL 200
+ I+++ GD N+
Sbjct: 92 NDRIQIVQGDVHNI 105
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
V+ K+ D G +T+ LA + KG+I +L + + + +
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKAN 93
Query: 187 -AANIEVLHGDFLNLDPKD 204
A ++ + G NL ++
Sbjct: 94 CADRVKGITGSMDNLPFQN 112
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 41.0 bits (96), Expect = 1e-04
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
V+DA GN T LA L K+ A ++ ++ + + + G N E++
Sbjct: 21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILD 77
Query: 196 DFLNLDP 202
NLD
Sbjct: 78 GHENLDH 84
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 42.1 bits (98), Expect = 2e-04
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 68 YMLRRPALEDYVVL-MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKA 126
Query: 159 MKGKGKIVACELNKERVRRLKDTIK 183
+ +G++++ E+ K+ K K
Sbjct: 127 VGSQGRVISFEVRKDHHDLAKKNYK 151
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+A+ + + + KVLD S G +++ K ++ V +
Sbjct: 40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINE--KYGAHTHGIDICSNIVNMANER 97
Query: 182 IKLSGAANIEVLHGDFLNLDPKD 204
+ + I D L + +
Sbjct: 98 VSGNN--KIIFEANDILTKEFPE 118
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 40.5 bits (94), Expect = 3e-04
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 191
+ K K+L ++ G H+A + KG + A E +R L D NI
Sbjct: 69 VMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA--ERENII 125
Query: 192 VLHGDFLNLDPKDPAYSEVRAILLD 216
+ GD +V I D
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYED 150
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 40.2 bits (94), Expect = 3e-04
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRL 178
+ + S V A+ K LD G +++LAA G + A + N + +
Sbjct: 15 YELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANV 70
Query: 179 KDTIKLSGAANIEVLHGDFLNLDPKDP 205
+ + N+ D NL
Sbjct: 71 ERIKSIENLDNLHTRVVDLNNLTFDRQ 97
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 40.8 bits (95), Expect = 4e-04
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR--------LKDTI 182
A G VLD G + L+ GK++ ++ ++ +
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136
Query: 183 KLSGAANIEVLHGDFLNLDPKD 204
+N+ L G NL +
Sbjct: 137 GSPSRSNVRFLKGFIENLATAE 158
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 40.2 bits (95), Expect = 4e-04
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
G+ ++A P+ V+ G + A + ++V + +++ V +
Sbjct: 43 QTGRLLYLLARIKQPQ---LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
Query: 181 TIKLSGAAN-IEVLHGDFLNLDPKDPAY 207
+ +G + +E+ GD L +
Sbjct: 100 MLHDNGLIDRVELQVGDPLGIAAGQRDI 127
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSG 186
+ AALAP+ G + D G+ +V G+ + E +R+ ++ I
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL 102
Query: 187 AANIEVLHGDF 197
+ + + G
Sbjct: 103 SPRMRAVQGTA 113
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 40.8 bits (95), Expect = 4e-04
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AA 188
A +PG V ++ + L ++V + + E + A
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
Query: 189 NIEVLHGDFLNLDPKDPA 206
I + D LD ++
Sbjct: 171 QITLHRQDAWKLDTREGY 188
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 39.9 bits (93), Expect = 6e-04
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAA 188
A+ +A ++ D + G +A + + ++ E ++E + +++L A
Sbjct: 29 ASLVADDRACRIADLGA--GAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA 86
Query: 189 N----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL---PSHASGHT 241
IEVL D +G E H++ P + +G
Sbjct: 87 AFSARIEVLEADVTLRAKARVE---------------AGLPDEHFHHVIMNPPYNDAGDR 131
Query: 242 ADPTEMERL 250
P ++
Sbjct: 132 RTPDALKAE 140
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 40.1 bits (94), Expect = 6e-04
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A L + G +VLD G V LA ++ +++ +V + +G A
Sbjct: 53 MIALLDVRSGDRVLDVGCGIGKPAVRLAT--ARDVRVTGISISRPQVNQANARATAAGLA 110
Query: 189 N-IEVLHGDFLNLDPKD 204
N + + D ++L +D
Sbjct: 111 NRVTFSYADAMDLPFED 127
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 38.7 bits (91), Expect = 9e-04
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
L V+D G + + + + A + + K + N
Sbjct: 29 GKLNLNKDDVVVDVGCGSG--GMTVEIAKRC-KFVYAIDYLDGAIEVTKQNLAKFNIKNC 85
Query: 191 EVLHGD----FLNLDP 202
+++ G L+
Sbjct: 86 QIIKGRAEDVLDKLEF 101
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 39.3 bits (91), Expect = 0.001
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 28/176 (15%)
Query: 109 HVHPLIVNGCVFLQGKASSMV-AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 167
V + + F G+ ++ A + V+DA + G LA++ ++
Sbjct: 59 FVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRM 115
Query: 168 CELNKERVRRLKDTIKLSGA---------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218
E N L D + A ++++H L +V + LDP
Sbjct: 116 LERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV--VYLDPM 173
Query: 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV 274
+A + + + + A A +RVV
Sbjct: 174 FPHKQKSALVKKEMRVFQSLVGPDLDAD--------GLLEPARLLA-----TKRVV 216
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 39.3 bits (91), Expect = 0.001
Identities = 34/179 (18%), Positives = 55/179 (30%), Gaps = 26/179 (14%)
Query: 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 174
V ++ QG A V+D + G T+ LA K + A E N
Sbjct: 97 VAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTA 155
Query: 175 VRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 234
L + IKL+ N+ + D +++ KD A R I+ + LD
Sbjct: 156 YHYLCENIKLNKLNNVIPILADNRDVELKDVA---DRVIMGYV-----HKTHKFLDKTFE 207
Query: 235 SHASG-----HTADPTEMERLNKLSAFQKKALRHALSF------------PGVERVVYS 276
H ++ + + A ++ PGV VV
Sbjct: 208 FLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDYEVRKIKKYAPGVWHVVVD 266
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 38.7 bits (91), Expect = 0.001
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 127 SMVA---AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
MV L KPG KVL+ + G A ++ G +V+ E E + + T++
Sbjct: 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR 123
Query: 184 LSGAANIEVLHGD 196
G N+ V+ GD
Sbjct: 124 KLGYDNVIVIVGD 136
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.3 bits (89), Expect = 0.001
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ VLD + + + + K E++ ++++ ++ + +
Sbjct: 14 FLKYCNESNLDKTVLDCGAGGDLPPLSIFV--EDGYKTYGIEISDLQLKKAENFSRENN- 70
Query: 188 ANIEVLHGDFLNLDPKD 204
+ + GD L KD
Sbjct: 71 FKLNISKGDIRKLPFKD 87
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 38.1 bits (88), Expect = 0.002
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197
G V D + G + AL+ G +++ E++KE V L + + +V GD
Sbjct: 50 GKVVADLGAGTGVLS--YGALLLGAKEVICVEVDKEAVDVLIENLGEFK-GKFKVFIGDV 106
Query: 198 LNLDPK 203
+ +
Sbjct: 107 SEFNSR 112
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 38.5 bits (89), Expect = 0.002
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 3/107 (2%)
Query: 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194
KPG KVL +A G H++ ++ G + A E + R L + K NI +
Sbjct: 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK--KRTNIIPVI 132
Query: 195 GDFLNLDPKDPAYSEVRAILLDPSCSG-SGTAAERLDHLLPSHASGH 240
D + + V I D + + A L +
Sbjct: 133 EDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFV 179
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 38.5 bits (89), Expect = 0.002
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A 188
++D PG T+ +A +K +I+ +L+ ++ + + S
Sbjct: 30 DEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK 89
Query: 189 NIEVLHGDFLNLDPKDPAYSE 209
N+ + +
Sbjct: 90 NVSFKISSSDDFKFLGADSVD 110
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 38.1 bits (88), Expect = 0.002
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
+ G KVL +A G H++ +++ GK E + VR L + NI
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ--RRPNIFP 129
Query: 193 LHGDFLNLDPKDPAYSEVRAILLD 216
L D V + +D
Sbjct: 130 LLADARFPQSYKSVVENVDVLYVD 153
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ + K VL+ GN T L + E ++E K+ +
Sbjct: 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKL----PK 89
Query: 189 NIEVLHGDFLNLDPKDP 205
+ GDFL+ +
Sbjct: 90 EFSITEGDFLSFEVPTS 106
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201
G T LA K K+ E++K NIE++ GD L +D
Sbjct: 62 GILTEELA---KNAKKVYVIEIDKSLEPYANKL--KELYNNIEIIWGDALKVD 109
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 38.1 bits (89), Expect = 0.003
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 120 FL--QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177
L +S++ A A +P VL+ GN TV L K K+VACEL+ V
Sbjct: 10 ILKNPLIINSIIDKA-ALRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAE 65
Query: 178 LKDTIKLSGAA-NIEVLHGDFLNLD 201
L ++ + A ++VL GD L D
Sbjct: 66 LHKRVQGTPVASKLQVLVGDVLKTD 90
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 37.7 bits (87), Expect = 0.003
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
+ S A+L + LD + G T +L K E K + K +
Sbjct: 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLT--KLYATTDLLEPVKHMLEEAKR--E 135
Query: 184 LSGAANIEVLHGDFLNLDPKDPAY 207
L+G + + Y
Sbjct: 136 LAGMPVGKFILASMETATLPPNTY 159
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 38.2 bits (89), Expect = 0.003
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 127 SMVA---AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
S++A + G +VL+ G ++ ++ KG +V+ E +++ K ++
Sbjct: 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Query: 184 LSGAANIEVLHGD 196
G N+ + GD
Sbjct: 122 RLGIENVIFVCGD 134
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 37.7 bits (88), Expect = 0.003
Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 152 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFL 198
V +A L++ +++ E+N + + + +G + + +L+G
Sbjct: 73 AVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 37.8 bits (88), Expect = 0.003
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ L P+PG +LD G T +A +++ + + + +
Sbjct: 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKAR-----QNYP 100
Query: 189 NIEVLHGDFLNLDPKDP 205
++ D N P
Sbjct: 101 HLHFDVADARNFRVDKP 117
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 37.5 bits (88), Expect = 0.004
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204
L+ + E++++ V L+ + NI + D L D
Sbjct: 47 LLTECDNLALVEIDRDLVAFLQKK--YNQQKNITIYQNDALQFDFSS 91
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
G +L+ GN ++ LA +++A E+ K V + I +
Sbjct: 206 ALDVTKGSKG-DLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHID 261
Query: 189 NIEVLHGD-------------FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL 233
N++++ F L D + I +DP SG + ++
Sbjct: 262 NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG---LDSETEKMV 316
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 37.2 bits (87), Expect = 0.004
Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 152 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGD 196
++ A++ + E N+ ++ K + N + ++ G+
Sbjct: 86 SMQFASISDD-IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN 130
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 36.8 bits (85), Expect = 0.004
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ A VL+ S G T HL+ L ++ A + + E + G
Sbjct: 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRH----GL 89
Query: 188 ANIEVLHGDFLNLDPKDP 205
N+E D + P
Sbjct: 90 DNVEFRQQDLFDWTPDRQ 107
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 37.1 bits (86), Expect = 0.005
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
S +A + K LD + G L K I + + +R ++ +G
Sbjct: 72 SELAMTGVLQRQAKGLDLGAGYGGAARFLVR--KFGVSIDCLNIAPVQNKRNEEYNNQAG 129
Query: 187 -AANIEVLHGDFLNLDPKD 204
A NI V +G FL + +D
Sbjct: 130 LADNITVKYGSFLEIPCED 148
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 36.8 bits (85), Expect = 0.006
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+ + + + A + + D PGN T L G I + + + + + D
Sbjct: 17 ERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAAD 75
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDP 205
N D P
Sbjct: 76 R-----LPNTNFGKADLATWKPAQK 95
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 36.9 bits (85), Expect = 0.006
Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
+ P ++ + + K S +A L +VL+ + G L+ +
Sbjct: 54 EVYRPTLEEIILLGF-ERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV 112
Query: 159 MKGKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
G++ E +E + + +K + N++ + DF + + + + + +P
Sbjct: 113 A---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREP 169
Query: 218 SC 219
Sbjct: 170 WH 171
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 36.3 bits (85), Expect = 0.006
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
KPG V+D +APG + ++ + GKG+I+AC D + + ++ L G
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIAC-----------DLLPMDPIVGVDFLQG 69
Query: 196 DFLNLD 201
DF +
Sbjct: 70 DFRDEL 75
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 36.2 bits (84), Expect = 0.006
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 131 AALAPKPGWKVLD--ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
P +D + G T+ LA + ++ A + N E + + ++ G
Sbjct: 27 CLAEPGKNDVAVDVGCGT--GGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG 81
Query: 189 -NIEVLHGDFLNLDPKDPAY 207
N+ ++ GD K P
Sbjct: 82 DNVTLMEGDAPEALCKIPDI 101
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 36.8 bits (85), Expect = 0.006
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
A++M +A L+ G + L A + +A + + + + K+
Sbjct: 27 ATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQ--KI 81
Query: 185 SGA-ANIEVLHGDFLNLDPKD 204
+G ++V+ D + D
Sbjct: 82 AGVDRKVQVVQADARAIPLPD 102
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 36.5 bits (85), Expect = 0.006
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 127 SMVAA---ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
MVA KPG +L+ + G ++ ++K + E E V K ++
Sbjct: 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLE 135
Query: 184 LSGAANIEVLHGD 196
+G N+ V+ GD
Sbjct: 136 RAGVKNVHVILGD 148
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 36.5 bits (84), Expect = 0.007
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 17/127 (13%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
+P ++L + L G + + + + V ++ + +
Sbjct: 41 RPEDRILVLGCGNSALSYELFL--GGFPNVTSVDYSSVVVAAMQA--CYAHVPQLRWETM 96
Query: 196 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 255
D LD ++ V L+ LD LL T + ++++ +
Sbjct: 97 DVRKLDFPSASFDVV----LEKGT---------LDALLAGERDPWTVSSEGVHTVDQVLS 143
Query: 256 FQKKALR 262
+ L
Sbjct: 144 EVSRVLV 150
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 36.1 bits (83), Expect = 0.009
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLH 194
V+DA G T+ A + G +++A +++ ++ ++ ++ G A IE +
Sbjct: 77 FKCDVVVDAFCGVGGNTIQFA--LTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFIC 133
Query: 195 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL 233
GDFL L A + L P G A +
Sbjct: 134 GDFLLLASFLKA----DVVFLSPPWGGPDYATAETFDIR 168
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 35.8 bits (83), Expect = 0.011
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q + + +A + K K LD + G + LA + G++V CE++ + +
Sbjct: 57 QAQLLANLARLIQAK---KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL 113
Query: 182 IKLSGAAN-IEVLHGDFLNLDPK 203
+ + A + I++ L +
Sbjct: 114 WRQAEAEHKIDLRLKPALETLDE 136
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 35.9 bits (84), Expect = 0.011
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201
G+ T+ L + + A E++ + + ++ KL N +VL+ D L
Sbjct: 42 GHFTLELV---QRCNFVTAIEIDHKLCKTTEN--KLVDHDNFQVLNKDILQFK 89
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 35.9 bits (83), Expect = 0.012
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ L KPG ++LD S G A +++ + K + G
Sbjct: 27 TLGRVLRMKPGTRILDLGSGSGEMLCTWAR--DHGITGTGIDMSSLFTAQAKRRAEELGV 84
Query: 188 AN-IEVLHGDFLNLDPKDP 205
+ + +H D +
Sbjct: 85 SERVHFIHNDAAGYVANEK 103
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 36.2 bits (83), Expect = 0.012
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
MV+ G +VL+ A G + V E++ + + L
Sbjct: 28 VDFMVSL-AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK-------ALDL 79
Query: 185 SGAANIEVLHGDFLNLDPKD 204
A + DFL +P +
Sbjct: 80 PPWAEG--ILADFLLWEPGE 97
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 34.6 bits (80), Expect = 0.016
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 22/99 (22%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERV----RRLKDTIKLSG 186
+ ++D G +L + K+ ++N + + I LS
Sbjct: 11 PNIFEGKKGVIVDYGCGNGFYCKYLL---EFATKLYCIDINVIALKEVKEKFDSVITLSD 67
Query: 187 AANIE-----------VLHGDFLNLDPKDPAYSEVRAIL 214
I H ++D K SEV+ IL
Sbjct: 68 PKEIPDNSVDFILFANSFH----DMDDKQHVISEVKRIL 102
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 35.2 bits (81), Expect = 0.016
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
K +VLD G T L+ K V ++++ +++ K + ++ + G
Sbjct: 52 KKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGK---ERGEGPDLSFIKG 105
Query: 196 DFLNL 200
D +L
Sbjct: 106 DLSSL 110
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 35.2 bits (82), Expect = 0.018
Identities = 5/48 (10%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 157 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204
+ + ++ EL+++ RL+ + + D + + +
Sbjct: 38 PVGERLDQLTVIELDRDLAARLQTH--PFLGPKLTIYQQDAMTFNFGE 83
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 35.2 bits (82), Expect = 0.018
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201
G+ T LA K ++ + EL+ + KL + ++H D L
Sbjct: 41 GHLTTKLA---KISKQVTSIELDSHLFNLSSE--KLKLNTRVTLIHQDILQFQ 88
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 35.3 bits (81), Expect = 0.019
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
K KVLD G + L G ++V +++++ +R+ ++ K +N+E + G
Sbjct: 37 KKRGKVLDLACGVGGFSFLLED--YG-FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVG 92
Query: 196 DFLNLD 201
D L
Sbjct: 93 DARKLS 98
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 35.1 bits (82), Expect = 0.020
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189
A L + G V++ GN T L L K+ EL++E V LK
Sbjct: 24 AEELNIEEGNTVVEVGGGTGNLTKVL--LQHPLKKLYVIELDREMVENLKSIGDE----R 77
Query: 190 IEVLHGDFLNLDPKD 204
+EV++ D
Sbjct: 78 LEVINEDASKFPFCS 92
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 35.3 bits (81), Expect = 0.021
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ L G + D + G +V LA + A E + ++
Sbjct: 26 IINLLNLPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAV------VHP 76
Query: 189 NIEVLHGDFLNL 200
+E G NL
Sbjct: 77 QVEWFTGYAENL 88
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 35.2 bits (81), Expect = 0.022
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 105 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK 164
G L V + F V+D + G + K K
Sbjct: 166 GYRLWVD---IAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVG----PFSIACKNAKK 218
Query: 165 IVACELNKERVRRLKDTIKLSG-AANIEVLHGD 196
I A ++N + LK IKL+ I + D
Sbjct: 219 IYAIDINPHAIELLKKNIKLNKLEHKIIPILSD 251
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 34.9 bits (80), Expect = 0.028
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 28/177 (15%)
Query: 118 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177
+F V A KP V+D + G+ ++ + GK K++A E + +
Sbjct: 106 IMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLP--IAVYGKAKVIAIEKDPYTFKF 163
Query: 178 LKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 236
L + I L+ + + D + ++ A R ++ E + L
Sbjct: 164 LVENIHLNKVEDRMSAYNMDNRDFPGENIAD---RILMGYV-----VRTHEFIPKALSIA 215
Query: 237 ASG-----HTADPTEMERLNKLSAFQKKALRHALSF------------PGVERVVYS 276
G H P ++ F++ + PGV VV
Sbjct: 216 KDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLD 272
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 34.4 bits (80), Expect = 0.036
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 155 LAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204
+A L + A EL+++ + RL+ +E+ GD L D
Sbjct: 61 IARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGS 106
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 34.0 bits (78), Expect = 0.036
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGA 187
+ A +LD S G + G +I E V + T
Sbjct: 33 LIEPWATGVDGVILDVGSGTG----RWTGHLASLGHQIEGLEPATRLVELARQT-----H 83
Query: 188 ANIEVLHGDFLNLDPKDPAY 207
++ HG +L +
Sbjct: 84 PSVTFHHGTITDLSDSPKRW 103
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 33.8 bits (78), Expect = 0.044
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 12/85 (14%)
Query: 136 KPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194
K +LD PG+ V L K KI+ D + N+ +
Sbjct: 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGI-----------DKKIMDPIPNVYFIQ 69
Query: 195 GDFLNLDPKDPAYSEVRAILLDPSC 219
G+ + + + + S
Sbjct: 70 GEIGKDNMNNIKNINYIDNMNNNSV 94
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 33.8 bits (78), Expect = 0.046
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 163 GKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGD 196
IV+ E ++ R +K G + IE+L GD
Sbjct: 79 ATIVSIERDERRYEEAHKHVKALGLESRIELLFGD 113
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 33.7 bits (77), Expect = 0.048
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDT 181
+ + + + P K+L G LA+ G ++ A + + + + K
Sbjct: 15 TEPNDFLVSVANQIPQGKILCLAEGEGRNACFLAS----LGYEVTAVDQSSVGLAKAKQL 70
Query: 182 IKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214
+ G I + + + D A+ + +I
Sbjct: 71 AQEKG-VKITTVQSNLADFDIVADAWEGIVSIF 102
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137,
structural genomics, PSI-2, protein structure
initiative; NMR {Geobacter metallireducens gs-15} PDB:
3cwi_A
Length = 78
Score = 31.5 bits (72), Expect = 0.051
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 145 CSAPGNKTVH--LAALMKGKGKIVACELNKERVRRLK-DTIKLSGAANIEVLH 194
+ V L+AL + + V ELN E + R D + +E L+
Sbjct: 12 VDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 33.4 bits (77), Expect = 0.062
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
L G+ S V + K K ++ G + A + GKI A + ++E
Sbjct: 57 LAGQLMSFVLKLVNAK---KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP 113
Query: 181 TIKLSGAAN-IEVLHGD 196
I+ +G + I + D
Sbjct: 114 FIRKAGVEHKINFIESD 130
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 33.6 bits (77), Expect = 0.064
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKE-----RVRRLKDTIKLSGAAN 189
+ ++LD G ++ + KG + ++N E +
Sbjct: 29 QEDDEILDIGCGSGK----ISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK 84
Query: 190 IEVLHGDFLNL 200
E + +L
Sbjct: 85 AEFKVENASSL 95
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 33.4 bits (77), Expect = 0.077
Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+G+ +++ K ++++ + G ++ A+ + GKI+ C++++E +
Sbjct: 47 EEGQFLNILTKISGAK---RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK 103
Query: 181 TIKLSGAAN-IEVLHGD 196
K +G N I + G
Sbjct: 104 YWKENGLENKIFLKLGS 120
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 33.4 bits (77), Expect = 0.077
Identities = 11/77 (14%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
Q + +++ + K KV+D + G + + + G ++ C+++++ K+
Sbjct: 51 EQAQLLALLVKLMQAK---KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE 107
Query: 181 TIKLSGAAN-IEVLHGD 196
+ +G ++ I +
Sbjct: 108 YWEKAGLSDKIGLRLSP 124
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 33.4 bits (77), Expect = 0.079
Identities = 12/77 (15%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
QG+ +++ K ++L+ + G T+ +A + G+++ E + + ++
Sbjct: 50 NQGQFLALLVRLTQAK---RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE 106
Query: 181 TIKLSGAAN-IEVLHGD 196
++L+G + + G
Sbjct: 107 NLQLAGVDQRVTLREGP 123
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 33.7 bits (78), Expect = 0.080
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 128 MVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
MVA A L +P +VLD GN T+ LA + +V E V + + +L
Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT--QAA-SVVGVEGVPALVEKGQQNARL 330
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSE-VRAILLDPSCSGSGTAAERLDHLL 233
+G N+ H + K P +LLDP+ +G AA + ++
Sbjct: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQII 377
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 33.0 bits (76), Expect = 0.084
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
QGK ++ + +L+ + G T+ LA + G++V E +++ +
Sbjct: 45 TQGKFLQLLVQIQGAR---NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 181 TIKLSGAAN-IEVLHGD 196
I+ + + +EV G
Sbjct: 102 NIERANLNDRVEVRTGL 118
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 33.1 bits (76), Expect = 0.091
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+G+ SM+ + K ++ G + A + GKI+A ++NKE
Sbjct: 66 DEGQFLSMLLKLINAK---NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP 122
Query: 181 TIKLSGAAN-IEVLHGDFLNLDPK 203
IK +G + I+ G L + +
Sbjct: 123 VIKKAGVDHKIDFREGPALPVLDE 146
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 33.0 bits (76), Expect = 0.098
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q + ++ + K +VL+ G + +A + G+I+AC+ + K
Sbjct: 60 QAQFLGLLISLTGAK---QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY 116
Query: 182 IKLSGAAN-IEVLHGD 196
+ +G A I + G
Sbjct: 117 WQKAGVAEKISLRLGP 132
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 32.9 bits (75), Expect = 0.11
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIE 191
A + +VLD G T+ LA +G ++V +L++E +R + K IE
Sbjct: 37 DAKREVRRVLDLACGTGIPTLELAE----RGYEVVGLDLHEEMLRVARRKAKERN-LKIE 91
Query: 192 VLHGDFLNLDPKDP 205
L GD L + K+
Sbjct: 92 FLQGDVLEIAFKNE 105
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 33.1 bits (75), Expect = 0.12
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 156 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215
L +I ++++ + ++ G +IE+ D P A + +
Sbjct: 189 LMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-ALHKFDTFIT 247
Query: 216 DPSCSGSGTAA--ER-LDHLLPSHASGHTADPTEMERLNKLSAFQKKALR 262
DP + A R + L +G+ L+K QK L
Sbjct: 248 DPPETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLN 297
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.12
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 44 RNKVKSIEDLMALYQTPD-VP 63
+ +K ++ + LY D P
Sbjct: 19 KQALKKLQASLKLY-ADDSAP 38
Score = 29.1 bits (64), Expect = 1.2
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 9/29 (31%)
Query: 172 KERVRRLKDTIKL---SGA------ANIE 191
K+ +++L+ ++KL A A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 32.6 bits (74), Expect = 0.14
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANI 190
A KVLD G +++L+ G + + + N+ + L +T + NI
Sbjct: 115 AAKIISPCKVLDLGCGQGRNSLYLSL----LGYDVTSWDHNENSIAFLNETKEKEN-LNI 169
Query: 191 EVLHGDFLNLDPKDP 205
D + ++
Sbjct: 170 STALYDINAANIQEN 184
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 32.2 bits (74), Expect = 0.14
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 127 SMVA---AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
MVA L P +VL+ + G +T LA L+ + + E K + + +K
Sbjct: 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLK 120
Query: 184 LSGAANIEVLHGD 196
N+ HGD
Sbjct: 121 NLDLHNVSTRHGD 133
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 31.8 bits (73), Expect = 0.21
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 127 SMVAAAL-----APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
M A AL G K LD S G T A ++ GK++ + KE V +
Sbjct: 62 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 121
Query: 182 IK-----LSGAANIEVLHGD 196
++ L + ++++ GD
Sbjct: 122 VRKDDPTLLSSGRVQLVVGD 141
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 31.7 bits (72), Expect = 0.23
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+ + + ++ +L+ L+ A G T LA ++ ++ + R
Sbjct: 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQ- 91
Query: 182 IKLSGAANIEVLHGDFLNLDPKDP 205
+ ++I D L +
Sbjct: 92 -RTKRWSHISWAATDILQFSTAEL 114
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.9 bits (73), Expect = 0.24
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
Q + M+ K KVL+ + G + ++ + G+++ C++N+ +
Sbjct: 47 EQAQFMQMLIRLTRAK---KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103
Query: 181 TIKLSGAAN-IEVLHGD 196
+ + + I++ G
Sbjct: 104 YWREAKQEHKIKLRLGP 120
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 31.7 bits (71), Expect = 0.32
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVR 176
+ + + +D S G V A E + R
Sbjct: 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQ-VVLQVAAATNCKHHYGVEKADIPAKYAETMDR 218
Query: 177 RLKDTIKLSGAAN--IEVLHGDFLNLDPKDP 205
+ +K G + + GDFL+ + ++
Sbjct: 219 EFRKWMKWYGKKHAEYTLERGDFLSEEWRER 249
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 31.1 bits (70), Expect = 0.38
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 127 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
S +AA + + +VL +A G HLA ++ +G I A E + + +L +
Sbjct: 41 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLE 99
Query: 181 TIK 183
++
Sbjct: 100 LVR 102
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 30.8 bits (70), Expect = 0.54
Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 152 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGD 196
+++ + + + E R+ K + +G + + L
Sbjct: 71 GLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR 117
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 30.7 bits (70), Expect = 0.55
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208
G V +A + + E++ V + G +N+ V+ D + + K +
Sbjct: 46 GASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDN 104
Query: 209 EVRAILL---DP 217
+R + L DP
Sbjct: 105 SLRMVQLFFPDP 116
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 30.3 bits (69), Expect = 0.60
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
G +A + EL K + +K S A N+++L+ D
Sbjct: 50 GQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNID 96
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 30.2 bits (69), Expect = 0.73
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 157 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204
AL++ ++ A E + L++T+ + ++ D L ++
Sbjct: 63 ALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPWEE 107
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 29.9 bits (68), Expect = 0.80
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201
G +A + ++ K + D + G NI++L D +L
Sbjct: 53 GAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT 104
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS
protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Length = 87
Score = 28.5 bits (64), Expect = 0.87
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 148 PGNKTVH-LAALMKGKGKIVACELNKERVRRLK-DTIKLSGAANIEVLH 194
T+ L A + + KIV E NKE + + + ++L IE++H
Sbjct: 34 KDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 30.1 bits (68), Expect = 0.97
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLH 194
+PG ++ D G T+ LA ++ +L++E + ++ + +++
Sbjct: 32 EPGKRIADIGCGTGTATLLLA-----DHYEVTGVDLSEEMLEIAQEKAMETN-RHVDFWV 85
Query: 195 GDFLNLDPKDP 205
D L+ +P
Sbjct: 86 QDMRELELPEP 96
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 30.1 bits (67), Expect = 1.0
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 133 LAPKPGWKVLD--ACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAAN 189
L K++D A G L + KGK ++ E ++ ++ L++ ++ N
Sbjct: 222 LRFSDSEKMVDCGASI--GESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN 279
Query: 190 I 190
Sbjct: 280 F 280
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 29.8 bits (68), Expect = 1.2
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 1 MEEARRIGLHTNLRHPLWPVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTP 60
E A+ L TN+R LW EK K I L + + + +D L
Sbjct: 153 FELAKSRSLDTNIRPKLWS--SLEKA----KETILSILKKYDIEVLITDPDDTKILLDVT 206
Query: 61 DVPKPRYVRVNTLKMDVDSAVLELGKQ 87
D P ++ V + +LG +
Sbjct: 207 D---PDEAYRKYKELGVKVLLYKLGSK 230
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 29.9 bits (67), Expect = 1.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 112 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 140
PL+V+G +++ + A PG W+
Sbjct: 58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQ 89
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 29.5 bits (67), Expect = 1.4
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 127 SMVA---AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
++ L G KVL+ + G T +A + K+V+ E+N++
Sbjct: 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKL-- 111
Query: 184 LSGAANIEVLHGD 196
LS NI+++ GD
Sbjct: 112 LSYYNNIKLILGD 124
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 29.1 bits (65), Expect = 1.7
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 9/81 (11%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKE---RVRRLKDTIKL 184
A P G VL+ + G T G ++ A EL+ R+
Sbjct: 75 FATRTGPVSG-PVLELAAGMGRLTFPFLD----LGWEVTALELSTSVLAAFRKRLAEAPA 129
Query: 185 SGAANIEVLHGDFLNLDPKDP 205
++ GD
Sbjct: 130 DVRDRCTLVQGDMSAFALDKR 150
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 29.1 bits (66), Expect = 1.8
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 21/94 (22%)
Query: 1 MEEARRIGLH----TNLRHPLWPVGDAEKFLMLHKGAIQLALAQ---LLVRNKVKSIEDL 53
+ E R G N R LW E+ + Q L + +++D
Sbjct: 155 LRECRAKGGKVIFDNNYRPRLWA--SKEET----QQVYQQMLECTDIAFL-----TLDDE 203
Query: 54 MALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ 87
AL+ V T V V++ G
Sbjct: 204 DALWGQQP---VEDVIARTHNAGVKEVVVKRGAD 234
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 29.1 bits (66), Expect = 2.0
Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 1 MEEARRIGLHT----NLRHPLWPVGDAEKFLM 28
+ + G N+R + + + L
Sbjct: 154 VTIVKANGGVISFDPNIRKEMLDIPEMRDALH 185
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia
coli} SCOP: d.15.3.2 PDB: 1zud_2
Length = 66
Score = 26.7 bits (60), Expect = 2.1
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 148 PGNKTVH-LAALMKGKGKIVACELNKERVRRLK-DTIKLSGAANIEVLH 194
+TVH L + + A +N++ V R + + I +
Sbjct: 13 AAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 28.6 bits (64), Expect = 2.2
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189
A PG +L+ + G L + V E ++ + + A
Sbjct: 29 ALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRR-----APE 78
Query: 190 IEVLHGDFLNL 200
+ L
Sbjct: 79 ATWVRAWGEAL 89
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 28.8 bits (65), Expect = 2.5
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH--TADPTEMERLNKL--SAF---QKK 259
Y +VRA+L D + P G + DP E RL +L AF + +
Sbjct: 69 YEDVRAVLGDGRFVRGPSMTRDEPRTRPEMVKGGLLSMDPPEHSRLRRLVVKAFTARRAE 128
Query: 260 ALRHALSFPGVERVV 274
+LR P +
Sbjct: 129 SLR-----PRAREIA 138
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 28.9 bits (64), Expect = 2.5
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 13/92 (14%)
Query: 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194
G +D + PG T L+K + + + L + L
Sbjct: 209 LANGMWAVDLGACPGGWT---YQLVKRNMWVYSVD-------NGPMAQSLMDTGQVTWLR 258
Query: 195 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
D P + ++ D + AA
Sbjct: 259 EDGFKFRPTRS---NISWMVCDMVEKPAKVAA 287
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 28.7 bits (64), Expect = 2.7
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ L VLD G ++ A G K++ +L++ + K + + +
Sbjct: 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAE--HGAKKVLGIDLSERMLTEAK---RKTTSP 90
Query: 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL 233
+ ++ + AY+ V + L + +++ L
Sbjct: 91 VVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINL 135
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA
ephrin, complex, membrane, cell surface receptor,
tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo
sapiens}
Length = 157
Score = 27.8 bits (61), Expect = 3.1
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 270 VERVVYSTCSIHQVENEDVI-----KSVLPIAMSFGFQLATPFPNGT 311
V +++C Q + P+ S FQL TPF G
Sbjct: 65 VNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 1 MEEARRIGLHTNLRHPLWPVGDAEKFLM 28
E A TN+R LW +A++ ++
Sbjct: 153 FEIASNRSFDTNIRLKLWSAEEAKREIL 180
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 28.2 bits (63), Expect = 3.4
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 6/58 (10%)
Query: 226 AERLDHLLPSHASGHTADPTE--MERLNKL----SAFQKKALRHALSFPGVERVVYST 277
R+ H D + L +L+ G ++V+ T
Sbjct: 233 VGRISHGFSMRPDLCAQDNPMNPKKYLGSFYTDALVHDPLSLKLLTDVIGKDKVILGT 290
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 28.0 bits (63), Expect = 3.6
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 127 SMVAAAL-----APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK-ERVRRL-- 178
M A AL KPG ++LD S G T +K KG + E L
Sbjct: 69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 128
Query: 179 -------KDTIKLSGAANIEVLHGD 196
D + + + ++ GD
Sbjct: 129 RSKANLNTDDRSMLDSGQLLIVEGD 153
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 28.4 bits (63), Expect = 4.0
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 227 ERLDHLLPSHASGHTADPTEMERLN-KLSAFQKKALRHALSFPGVERVVYST 277
+RL + DP E R N ++ + + L GV+++++ +
Sbjct: 304 KRLKKAANTQPQYFPEDPVEQLRNNVWIAPYYEDDLPELARVIGVDKILFGS 355
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 28.1 bits (62), Expect = 4.2
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 120 FLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177
+ QG+A+ ++ + + P + L G+ V +A+ + +V ++++ + +
Sbjct: 47 WDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMAS--PER-FVVGLDISESALAK 103
Query: 178 LKDTIKLSGAA-NIEVLHGDFLNLDPKDP 205
+T S A + D P +
Sbjct: 104 ANETYGSSPKAEYFSFVKEDVFTWRPTEL 132
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 27.5 bits (62), Expect = 4.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 136 KPGWKVLDACSAPG--------NKTVHLAALMKGKGKIVACELN 171
+PG +VLD +APG G ++ +L
Sbjct: 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLL 64
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 27.9 bits (63), Expect = 4.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 1 MEEARRIGLHT----NLRHPLWPVGDAEKFLM 28
MEEA+R G+ N R LW +A FL
Sbjct: 150 MEEAKRRGVRVSLDVNYRQTLWSPEEARGFLE 181
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 27.9 bits (63), Expect = 4.5
Identities = 15/69 (21%), Positives = 19/69 (27%), Gaps = 18/69 (26%)
Query: 1 MEEARRIGLH----TNLRHPLWPVGDAEKFLMLHKGAIQLALAQ---LLVRNKVKSIEDL 53
+ +AR G NLR LW + I A L S ED
Sbjct: 171 LAQARATGRTIAFDPNLRPRLWA--GTGE----MTETIMQGAAVSDIALP-----SFEDE 219
Query: 54 MALYQTPDV 62
A +
Sbjct: 220 AAWFGDAGP 228
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 27.4 bits (61), Expect = 4.7
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANI 190
G K+LDA G +L+ G ++ +L+ + K
Sbjct: 41 DAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQD-----FPEA 91
Query: 191 EVLHGDFLNLDPKDPAY 207
+ GD + +
Sbjct: 92 RWVVGDLSVDQISETDF 108
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 28.0 bits (61), Expect = 5.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 22 DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQ 58
+ ++ + + A++ A L R K KSI ++++ Q
Sbjct: 381 EDKRRAICERSALEFAKMLLKERRKFKSIGEVVSAIQ 417
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 27.6 bits (61), Expect = 5.5
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 16/72 (22%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
K +V+D G + AA + KG + + +++ + N++
Sbjct: 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM-------------NVQS 119
Query: 193 LHGDFLNLDPKD 204
L + + K
Sbjct: 120 LGWNIITFKDKT 131
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 28.0 bits (63), Expect = 5.8
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 149 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201
GN LA ++ + E N +R +L + ++ N V GD + +
Sbjct: 244 GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELE-----NTIVFCGDAADQE 291
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 27.7 bits (62), Expect = 5.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 78 DSAVLELGKQFVVQKDDLVPDLLILPPG 105
D+A L+L + D D + P G
Sbjct: 41 DAARLDLTGPLAMSTDSYTVDPIFFPGG 68
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 27.7 bits (61), Expect = 6.0
Identities = 15/146 (10%), Positives = 45/146 (30%), Gaps = 14/146 (9%)
Query: 155 LAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRAI 213
+ A G K++ + + E + + D I+L+ I ++ G + + +
Sbjct: 80 MFAAKAGAKKVLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE 138
Query: 214 LLDPSCSGSGTAAERLD----------HLLPSHASGHTADPTEMERLNKLSAFQKKALRH 263
+ L + P + +++ + AF +
Sbjct: 139 WMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDV--Y 196
Query: 264 ALSFPGVERVVYSTCSIHQVENEDVI 289
+++ V + ++ + +I
Sbjct: 197 GFKMSCMKKAVIPEAVVEVLDPKTLI 222
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 27.7 bits (60), Expect = 6.2
Identities = 13/90 (14%), Positives = 23/90 (25%)
Query: 144 ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 203
S K K+ E N + LK + + ++ D +L
Sbjct: 428 LKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGI 487
Query: 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLL 233
+ ++ GS E L
Sbjct: 488 AKDRGFEQPDIIVSELLGSFGDNELSPECL 517
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 27.1 bits (60), Expect = 6.6
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 126 SSMVAAALAP-KPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIK 183
S+ + L G K+L+ G + A M G + A + + E
Sbjct: 31 SATLTKFLGELPAGAKILELGCGAG----YQAEAMLAAGFDVDATDGSPELAAEASR--- 83
Query: 184 LSGAANIEVLHGDFLNLDPKDP 205
V F LD D
Sbjct: 84 ---RLGRPVRTMLFHQLDAIDA 102
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 27.5 bits (62), Expect = 6.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 10/44 (22%)
Query: 1 MEEARRIGLHT----NLRHPLWPVGDAEKFLMLHKGAIQLALAQ 40
AR G R LWP + + G ++ +++
Sbjct: 168 FNYAREQGKIVCFDPCYRKVLWP--EGDDG----AGVVEEIISR 205
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 27.2 bits (61), Expect = 6.8
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 26/90 (28%)
Query: 127 SMVAA---ALAP--KPGWKVLD---------ACSAPGNKTVHLAALMKG-KGKIVACELN 171
M A L KPG + +D C A +++ ++ E
Sbjct: 65 HMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMA------IKMNVLENKNSYVIGLERV 118
Query: 172 KERVRRLKDTIKLSGAA-----NIEVLHGD 196
K+ V + IK N +++H +
Sbjct: 119 KDLVNFSLENIKRDKPELLKIDNFKIIHKN 148
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 27.0 bits (60), Expect = 7.6
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 140 KVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198
LD GN T +L K A +L++E + ++ + G + D
Sbjct: 40 DYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENKFRSQG-LKPRLACQDIS 94
Query: 199 NLDPKDP 205
NL+
Sbjct: 95 NLNINRK 101
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 27.1 bits (60), Expect = 7.7
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A L G +++D G G ++ +L+++ + R +
Sbjct: 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHE--HGASYVLGLDLSEKMLARAR---AAGPDT 89
Query: 189 NIEVLHGDFLNLDPKD 204
I D L
Sbjct: 90 GITYERADLDKLHLPQ 105
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 27.1 bits (61), Expect = 7.7
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 10/44 (22%)
Query: 1 MEEARRIGLHT----NLRHPLWPVGDAEKFLMLHKGAIQLALAQ 40
+ A+R + + R W E+ L Q
Sbjct: 162 IRLAKRNDVKVVFELDYRPYSWE--TPEET----AVYYSLVAEQ 199
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 27.2 bits (60), Expect = 8.0
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 8/56 (14%)
Query: 226 AERLDHLLPSHASGHTADPTEMERLNKL----SAFQKKALRHALSFPGVERVVYST 277
R L D LN + + + + + V+ V++++
Sbjct: 232 WGRFRGLAQEMKKPLLED----HVLNNIFFDTCVYHQPGIDLLNTVIPVDNVLFAS 283
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 27.2 bits (61), Expect = 8.1
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 207 YSEVRAILLDPSCS----GSGTAAERLDHLLPSHASGHTADPTEMERLNKL--SAF---Q 257
+ +VR + DP H +P+ + DP + RL + +AF
Sbjct: 57 HDDVRLVTNDPRFGREAVMDRQVTRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARG 116
Query: 258 KKALRHALSFPGVERVV 274
+ +R ++
Sbjct: 117 VERVR-----ERSRGML 128
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 27.3 bits (61), Expect = 8.4
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 1 MEEARRIGLHT----NLRHPLWPVGDAEKFLM 28
++ A G+ N R LW +A+K ++
Sbjct: 163 LKVANEKGVTVSCDLNYRARLWTKEEAQKVMI 194
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 26.9 bits (59), Expect = 8.6
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERV----RRLKDTIK 183
+ L +VLD G ++ L +G + + + + + + + + K
Sbjct: 49 LLGLLRQHGCHRVLDVACGTGVDSIMLVE----EGFSVTSVDASDKMLKYALKERWNRRK 104
Query: 184 LSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214
+ ++L LD PA A++
Sbjct: 105 EPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 27.2 bits (61), Expect = 9.0
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 207 YSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGH--TADPTEMERLNKL--SAFQKK- 259
Y++VR +DP S T E +P+ + DP + RL KL +F +
Sbjct: 51 YADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRR 110
Query: 260 --ALRHALSFPGVERVV 274
L P + +
Sbjct: 111 MNELE-----PRITEIA 122
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 27.0 bits (60), Expect = 9.0
Identities = 8/74 (10%), Positives = 18/74 (24%), Gaps = 10/74 (13%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIE 191
+LD G H + EL+++ + + +
Sbjct: 36 SRTPEASSLLDVACGTGTHLEHFTK----EFGDTAGLELSEDMLTHAR-----KRLPDAT 86
Query: 192 VLHGDFLNLDPKDP 205
+ GD +
Sbjct: 87 LHQGDMRDFRLGRK 100
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 27.2 bits (61), Expect = 9.8
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH--TADPTEMERLNKL--SAFQKK--- 259
Y RA+L DP S + + + + +DP RL KL F +
Sbjct: 78 YDRARAVLADPRFSKDWRNSTTPLTEAEAALNHNMLESDPPRHTRLRKLVAREFTMRRVE 137
Query: 260 ALRHALSFPGVERVV 274
LR P V+ +V
Sbjct: 138 LLR-----PRVQEIV 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,251,795
Number of extensions: 324123
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 199
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)