RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019692
(337 letters)
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 124 bits (311), Expect = 7e-34
Identities = 106/248 (42%), Positives = 142/248 (57%), Gaps = 27/248 (10%)
Query: 65 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 105
PR+VRVNTLK D V +Q D L+P+LL+ P
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 106 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 165
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 166 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 225
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 226 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 285
+ +L+ S RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q EN
Sbjct: 183 SRQLEEPGAGTPSPV--------RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEEN 234
Query: 286 EDVIKSVL 293
EDV++ L
Sbjct: 235 EDVVRDAL 242
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 90.5 bits (223), Expect = 3e-21
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 14/245 (5%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPG-CDL 108
E + + + + P PR RVNTLK+ V V L K+ F ++ + L +
Sbjct: 28 ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 87
Query: 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 168
P + G +++Q +S AL PKPG V D +APG KT +LA LM+ G I A
Sbjct: 88 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 147
Query: 169 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
++++ R+R + + G N+ + H L++ + + ILLD C+GSG
Sbjct: 148 DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF---DKILLDAPCTGSG----- 199
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 288
+ + +++ L + L G +VYSTCS+ ENE V
Sbjct: 200 --TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG--ILVYSTCSLEPEENEFV 255
Query: 289 IKSVL 293
I+ L
Sbjct: 256 IQWAL 260
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 85.9 bits (211), Expect = 6e-20
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 13/244 (5%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 109
E ++ + + P ++R+N DS + L + + PD + L +H
Sbjct: 15 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 169
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + A +
Sbjct: 75 ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVD 133
Query: 170 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
++++R+ R+ D +K G + ILLD CS +G
Sbjct: 134 IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD--RILLDAPCSATGVIRRHP 191
Query: 230 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289
D ++ L +L + +VY+TCS+ EN I
Sbjct: 192 DIK-------WLRRDRDIPELAQLQSEI--LDAIWPHLKTGGTLVYATCSVLPEENSLQI 242
Query: 290 KSVL 293
K+ L
Sbjct: 243 KAFL 246
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 54.4 bits (130), Expect = 6e-09
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 98 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 157
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 60 QYMLRRPALEDYVVLMK-RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSK 118
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAA-----------NIEVLHGDFLNLDPKDPA 206
+ +G++++ E+ K+ K K + N++ +H D +D
Sbjct: 119 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIK 177
Query: 207 YSEVRAILLD 216
A+ LD
Sbjct: 178 SLTFDAVALD 187
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 52.0 bits (124), Expect = 1e-08
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 127 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
S +AA + + +VL +A G HLA ++ +G I A E + + +L +
Sbjct: 40 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLE 98
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219
++ NI L D +V I D +
Sbjct: 99 LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 135
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 48.2 bits (114), Expect = 4e-07
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 127 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS-GTAAERLDHLLPSH 236
+ NI + GD + +V I D + + + L
Sbjct: 116 P--IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 47.4 bits (112), Expect = 6e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 77 VDSAVLELGKQFVVQKDDLVP----DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 132
V + LG V++ D + ++ +I + +S +
Sbjct: 22 VKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGR-VIRRNTQIISEIDASYIIMR 80
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
+PG +L+ GN + ++ + GKG + E +++ +++ D +
Sbjct: 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR 140
Query: 193 LHGDFLNLDPKDPAYSEVRAILLDPSC 219
+ D Y V A + DP
Sbjct: 141 TSRSDIADFISDQMYDAVIADIPDPWN 167
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 46.9 bits (111), Expect = 1e-06
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
K ++ + PG +VL+A + G T+ L + G++++ E + + +
Sbjct: 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142
Query: 184 LSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
N ++ D + + D + +L P
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAP 179
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 41.0 bits (95), Expect = 1e-04
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ G + LD S G +HL G ++VA + + E +RR ++ +L+G
Sbjct: 136 ENRLYMERFRGERALDVFSYAGGFALHL---ALGFREVVAVDSSAEALRRAEENARLNGL 192
Query: 188 ANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
N+ VL + +L + E ++LDP P+ A G
Sbjct: 193 GNVRVLEANAFDLLRRLEKEGERFDLVVLDP----------------PAFAKGKKDVERA 236
Query: 247 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 281
+++ K L+ G + ++CS H
Sbjct: 237 YRAYKEVNLRAIKLLK-----EG-GILATASCSHH 265
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 39.8 bits (92), Expect = 1e-04
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG- 186
++ P +D G T+ L ++ A + N E + + ++ G
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 187 AANIEVLHGDFLNLDPKDPAYSEVRAI 213
N+ ++ GD K P
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVG 107
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 39.2 bits (91), Expect = 3e-04
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 123 GKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
G VA A+ K V+DA + G LA++ ++ E N L D
Sbjct: 72 GGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDD 128
Query: 181 TIKLSGA---------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 231
+ A ++++H L +V + LDP +A
Sbjct: 129 GLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV--VYLDPMFPHKQKSALVKKE 186
Query: 232 L-LPSHASGHTADPTEMERLNKLSAFQK 258
+ + G D + +L A ++
Sbjct: 187 MRVFQSLVGPDLDADGLLEPARLLATKR 214
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 37.1 bits (85), Expect = 0.001
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
V L P+ +LD G + + G +I+ +++ E +R ++ +K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-D 72
Query: 189 NIEVLHGDFLNLD--PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
+ + + D K +V IL+D S +L +
Sbjct: 73 RVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS-----TYQLKGENRELENLKEFLKKA 127
Query: 247 MERLNKLSAF 256
+ LN
Sbjct: 128 EDLLNPGGRI 137
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 36.1 bits (83), Expect = 0.005
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+V L VLDA SA G + + AL ++ +++++ +K + L+
Sbjct: 36 IVVVLLNILNPKIVLDALSATGIRGIR-FALETPAEEVWLNDISEDAYELMKRNVMLNFD 94
Query: 188 ANIEVLHGD 196
+ G
Sbjct: 95 GELRESKGR 103
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 36.2 bits (83), Expect = 0.005
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLK 179
S V K G +D S GN V AAL G CE+ + LK
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQ-AALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 180 DTIKLSGAANIEV---LHGDFLNLDPKDPAYSEVRAILLDPSC 219
KL G V L F++ + + IL++
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL 307
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 34.7 bits (79), Expect = 0.009
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 127 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
S +AAA+ K K+L ++ G H+A + + A E +R L
Sbjct: 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELL 115
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 34.8 bits (79), Expect = 0.010
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
+ + + +D S G + +AA K E + + +
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETMDREFR 199
Query: 187 AA---------NIEVLHGDFLNLDPKDP 205
+ GDFL+ + ++
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRER 227
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 34.9 bits (79), Expect = 0.011
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 31/161 (19%)
Query: 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI-EVLHG 195
PG +VLD + G +H A + G +++ + + + K+ KL+G + + + G
Sbjct: 145 PGDRVLDVFTYTGGFAIH--AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 202
Query: 196 DFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLS 254
K E ++LDP L
Sbjct: 203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKD-----------------------LKAGL 239
Query: 255 AFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
L+ G +V +CS H V+ + ++
Sbjct: 240 RAYFNVNFAGLNLVKDG-GILVTCSCSQH-VDLQMFKDMII 278
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 33.0 bits (74), Expect = 0.036
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 173
++ + +VLD + G+ + + + + + KE
Sbjct: 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFS---PYVQECIGVDATKE 49
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 32.0 bits (71), Expect = 0.079
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 176
+ + G +VL+ A G + V E++ + +
Sbjct: 10 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD 58
>d1j33a_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Thermus thermophilus
[TaxId: 274]}
Length = 333
Score = 31.4 bits (71), Expect = 0.15
Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 46/220 (20%)
Query: 52 DLMALYQTPDVPK--PRYVRVNTLKMDVDSA--------VLELGKQFVVQKDDLVPDLLI 101
D+ + + PD P R VR T + A L G++ +
Sbjct: 98 DVGVVGELPDHPGLLKRKVRPGTANLAQGPAMTPEEAERALLAGREAARR---------A 148
Query: 102 LPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG 161
+ G L L A++ + AAL P V+ + G + +
Sbjct: 149 IAEGATL----LAAGDMGIGNTTAAAALTAALLGLPPEAVVGRGTGVGEEGL-------- 196
Query: 162 KGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKDPAYSEVRAILLD-P 217
+ K A R+ +++ G + + G +L Y ++LD
Sbjct: 197 RRKRQAVARALARLHPGMGPLEVAAEVGGIELVAIAGIYLE------GYEAGLPLVLDGF 250
Query: 218 SCSGSGTAAERL-----DHLLPSHASGHTADPTEMERLNK 252
+ A ++ DHL H S ++E L
Sbjct: 251 PVTAGALLAWKMAPGLRDHLFAGHLSREPGHRHQLEALGL 290
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 30.7 bits (68), Expect = 0.23
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ L +VLD G ++ L + ++ K ++ + K
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
Query: 188 ANIEVLHGDFLNLDPKDPAYSEVRAILL 215
+ ++L LD PA A++
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVIC 135
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 30.3 bits (67), Expect = 0.26
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 163
+ L KPG ++LD S G A G
Sbjct: 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG 59
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 29.3 bits (65), Expect = 0.45
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
LA +PG +DA H +++ G+++ + + E V R K
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQDPEAVARAKGLHL--PGL 64
Query: 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 220
+ + L V IL D S
Sbjct: 65 TVVQGNFRHLKRHLAALGVERVDGILADLGVS 96
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 29.2 bits (64), Expect = 0.59
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 173
+ A K +VLD + G+ A + K+VA +L ++
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTED 48
>d1l5oa_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Salmonella typhimurium
[TaxId: 90371]}
Length = 346
Score = 29.5 bits (66), Expect = 0.61
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 20/155 (12%)
Query: 104 PGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 163
G L V ++ + + G K
Sbjct: 162 RGVTL----FGVGELGMANTTPAAAMVSVFTGSDA----KEVVGIGANLPPSRIDNKVDV 213
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD-PSCSGS 222
A +N+ R D + G ++ + G L A +LLD +
Sbjct: 214 VRRAIAINQPNPRDGIDVLSKVGGFDLVGMTGVMLG------AARCGLPVLLDGFLSYSA 267
Query: 223 GTAAER-----LDHLLPSHASGHTADPTEMERLNK 252
AA + +L+PSH S + L+
Sbjct: 268 ALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSM 302
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 28.9 bits (63), Expect = 0.88
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKDTIKLS 185
PG VLD G+ A+ +G+ + + ++++ L+D +
Sbjct: 203 ALSHPGSTVLDFF--AGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDGLID 259
Query: 186 GAANIEV 192
A + E+
Sbjct: 260 KARSYEI 266
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 28.8 bits (63), Expect = 1.0
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 112 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 140
PL+V+G +++ + A PG W+
Sbjct: 58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQ 89
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 126
Score = 27.6 bits (61), Expect = 1.1
Identities = 13/98 (13%), Positives = 21/98 (21%), Gaps = 16/98 (16%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
+L L L I CE+ V A + + G
Sbjct: 14 DEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVT----ACDTLIEDG 69
Query: 196 DFLNLDPKDPAYSEVRAILLD----------PSCSGSG 223
+N A +E + C+
Sbjct: 70 MIIN--TNSDAVNEKIKSRISQLLDIHEFKCGPCNRRE 105
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 28.3 bits (62), Expect = 1.4
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 230 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQ------- 282
D + A+ E R KL A + +S G T ++
Sbjct: 128 DQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILG 187
Query: 283 ----------VENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFE 326
+ +LP+++S+ ++ NG A A++F K L
Sbjct: 188 VSKASMQPVWDGKAFQPRLMLPLSLSYDCRVI----NG-AAAARFTKRLGDLLA 236
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 27.5 bits (59), Expect = 2.9
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 207 YSEVRAILLDPSCSGSGTAAERLD----HLLPSHASGHTADPTEMERLNKLSAFQKKALR 262
+ +VR + DP ++ H +P+ + DP + RL + A A
Sbjct: 50 HDDVRLVTNDPRFGREAVMDRQVTRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARG 109
Query: 263 H 263
Sbjct: 110 V 110
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.8 bits (58), Expect = 3.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 210 VRAILLDPSCSGSGTAAERL 229
VRA+LL P +G GT A +L
Sbjct: 4 VRAVLLGPPGAGKGTQAPKL 23
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 26.8 bits (58), Expect = 4.0
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLH 194
K G VLD G + G G+ ++ + + + + +
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 195 GDFLNLDPKDP 205
D
Sbjct: 81 QDSYGRHMDLG 91
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 26.2 bits (56), Expect = 4.7
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAA 157
++L PG +VL L+
Sbjct: 14 SSLNVVPGARVLVPLCGKSQDMSWLSG 40
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 26.3 bits (57), Expect = 5.7
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 186 GAANI-EVLHGDFLNLDPKDPAYSE 209
G A+I EVL DFL +P++P++++
Sbjct: 31 GMADIAEVLWRDFLKHNPQNPSWAD 55
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 26.3 bits (57), Expect = 6.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 184 LSGAANIEVLHGDFLNLDPKDP 205
+ A VL+ + + +PK+P
Sbjct: 34 MGCAPMGHVLYDEVMRYNPKNP 55
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
subtilis [TaxId: 1423]}
Length = 392
Score = 25.9 bits (56), Expect = 8.0
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 22 DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQT 59
+K + + A++ A + R++ K+I D++ L++
Sbjct: 352 PFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKL 389
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 25.9 bits (57), Expect = 9.1
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 28/93 (30%)
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A + R+R KDTI ++G VL D+L +++ I+ GT+A
Sbjct: 523 ATRFSLARIREGKDTISVTG----NVL-RDYL---------TDLFPIM------ELGTSA 562
Query: 227 ERLDHLLPSHASG-------HTADPTEMERLNK 252
+ L ++P + G + P +++ +
Sbjct: 563 KML-SIVPLMSGGGLFETGAGGSAPKHVQQFLE 594
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 24.4 bits (53), Expect = 9.6
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 80 AVLEL-GKQFVVQKDD-LVPDLLILPPGCDLHVHPLIVNG----CVFLQGKASSMVAAAL 133
A+++ GKQ+ V+ L + L PG + + L++ G + +S+VA L
Sbjct: 3 AIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVVAEVL 62
Query: 134 APKPGWKVL 142
G K+L
Sbjct: 63 GHGRGKKIL 71
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 25.6 bits (55), Expect = 9.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 184 LSGAANIEVLHGDFLNLDPKDP 205
+ A VL + + + +DP
Sbjct: 31 MGMAPMSAVLWTEVMKYNSQDP 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,240,005
Number of extensions: 56963
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 40
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)