BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019694
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/339 (89%), Positives = 318/339 (93%), Gaps = 2/339 (0%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW+S VGV +IGK LVNSK
Sbjct: 318 GIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSK 377
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY- 299
E P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY
Sbjct: 378 EGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
Query: 300 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 438 GQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/338 (86%), Positives = 319/338 (94%), Gaps = 1/338 (0%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 129 MDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 189 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCK
Sbjct: 249 ADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCK 308
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+
Sbjct: 309 GIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSR 368
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct: 369 EGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
Query: 301 KAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
+ AQQ N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct: 429 QGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/337 (85%), Positives = 306/337 (90%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESG 197
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+
Sbjct: 318 GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSR 377
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYG
Sbjct: 378 EGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437
Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
K AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 315/337 (93%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 128 MDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 187
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 188 NAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
AD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCK
Sbjct: 248 ADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCK 307
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS+
Sbjct: 308 GIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSR 367
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
+ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 368 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
K AQQ +PVPEGCTD A+N+DPTARSDDGSC YT
Sbjct: 428 KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 276/337 (81%), Positives = 308/337 (91%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESG
Sbjct: 136 MDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESG 195
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 196 NAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNI 255
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC
Sbjct: 256 ADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 315
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIF+ D V + +VKLVD FPGQSIDFFGALRARVY DEVRKW++ VGV ++GK LVNSK
Sbjct: 316 GIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSK 375
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
+ P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI G F+G
Sbjct: 376 DGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435
Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
KAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct: 436 KAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 273/300 (91%), Positives = 287/300 (95%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESG 197
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCI 317
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI+GVGV SIGK LVNSK
Sbjct: 318 GIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSK 377
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
E PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct: 378 EGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 570 bits (1470), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/298 (90%), Positives = 286/298 (95%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW+S VGV +IGK LVNSK
Sbjct: 318 GIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSK 377
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 298
E PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct: 378 EGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 563 bits (1450), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/299 (88%), Positives = 284/299 (94%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 140 LDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 199
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 200 NAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 259
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCK
Sbjct: 260 ADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCK 319
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGV + GK LVNSK
Sbjct: 320 GIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSK 379
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 299
E PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct: 380 EGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/301 (87%), Positives = 284/301 (94%), Gaps = 1/301 (0%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 126 MDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 185
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
N GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 186 N-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 244
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
AD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 245 ADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 304
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ +GV +I K LVNS+
Sbjct: 305 GIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSR 364
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
E PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYG
Sbjct: 365 EGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
Query: 301 K 301
K
Sbjct: 425 K 425
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 554 bits (1428), Expect = e-157, Method: Compositional matrix adjust.
Identities = 258/299 (86%), Positives = 283/299 (94%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESG
Sbjct: 134 MDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESG 193
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 194 NAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 253
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 254 ADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 313
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+S GV +I + LVNSK
Sbjct: 314 GIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSK 373
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 299
E PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct: 374 EGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/299 (86%), Positives = 281/299 (93%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 142 LDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 201
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 202 NAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 261
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 262 ADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 321
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR D V + DIV+LVD PGQSIDFFGALRARVYDDEVRKWISGVGV S+GK LVNSK
Sbjct: 322 GIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSK 381
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 299
E PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct: 382 EGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 259/299 (86%), Positives = 277/299 (92%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESG
Sbjct: 142 MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG 201
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 202 NAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 261
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC
Sbjct: 262 ADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 321
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+SG G+ IG L+NS
Sbjct: 322 GIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSF 381
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 299
+ PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct: 382 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 255/296 (86%), Positives = 278/296 (93%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESG
Sbjct: 137 MDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG 196
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 197 NAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 257 ADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 316
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW+SG G+ IG+ L+NS+
Sbjct: 317 GIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSR 376
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 296
+ PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct: 377 DGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 549 bits (1414), Expect = e-155, Method: Compositional matrix adjust.
Identities = 256/298 (85%), Positives = 278/298 (93%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESG
Sbjct: 142 MDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG 201
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAA+II+KG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 202 NAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 261
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 262 ADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 321
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS
Sbjct: 322 GIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSF 381
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 298
+ PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct: 382 DGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 520 bits (1339), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/276 (88%), Positives = 260/276 (94%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
MDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 135 MDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 194
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 195 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 254
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C
Sbjct: 255 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICT 314
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIFR D V +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW GVGV IG++LVNSK
Sbjct: 315 GIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSK 374
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 276
E+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct: 375 ESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 410
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/287 (73%), Positives = 240/287 (83%), Gaps = 5/287 (1%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESG
Sbjct: 111 LDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESG 170
Query: 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
NAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNI
Sbjct: 171 NAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNI 230
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
ADNPT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC
Sbjct: 231 ADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCM 290
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
GIF+ DNV ++ LVDTFPGQSIDFFGALRARVYDD VR+WI+ GV IG+ LVN++
Sbjct: 291 GIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNAR 350
Query: 241 EAAPTFEQPRMTME--KLLEYGNMIVQEQENVKRVQLADKYLSEAAL 285
+ P+++M+ L++YG +V EQENVKRVQLAD YLS A L
Sbjct: 351 QKVAM---PKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/280 (61%), Positives = 217/280 (77%), Gaps = 1/280 (0%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S GELES
Sbjct: 10 LDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESP 69
Query: 61 NAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 119
+AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+VNATLMN
Sbjct: 70 DAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMN 129
Query: 120 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 179
IADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+
Sbjct: 130 IADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIV 189
Query: 180 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNS 239
GIF D ++ D+ KLVD+FP QSIDFF ALR+R+YD+++R +I VG ++ +VNS
Sbjct: 190 GGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNS 249
Query: 240 KEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 279
E P F++P T+ L+E N +V EQ+ ++ QL D+Y
Sbjct: 250 LEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/280 (62%), Positives = 217/280 (77%), Gaps = 1/280 (0%)
Query: 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S GELES
Sbjct: 10 LDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESP 69
Query: 61 NAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 119
+AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+VNATLMN
Sbjct: 70 DAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMN 129
Query: 120 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 179
IADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+
Sbjct: 130 IADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIV 189
Query: 180 KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNS 239
GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD ++R +I VG I +VNS
Sbjct: 190 GGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNS 249
Query: 240 KEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 279
EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 250 LEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 94/195 (48%), Gaps = 99/195 (50%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
++VPLILGIWGGK MGINPIMMSAGELESGNAGEPA
Sbjct: 45 LRVPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA----------- 79
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
KMCCL INDLDAGAG
Sbjct: 80 ------KMCCLFINDLDAGAG--------------------------------------- 94
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLV 197
RVPIIVTGNDFSTLYAPLI RIGVC GIFR LV
Sbjct: 95 --RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LV 125
Query: 198 DTFPGQSIDFFGALR 212
DTFPGQSIDFFGALR
Sbjct: 126 DTFPGQSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 41/63 (65%), Gaps = 17/63 (26%)
Query: 42 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 101
+MGINPIMMSAGELESGNAGEPA KMCCL INDLDAGAGR+G
Sbjct: 13 ITRMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIG 55
Query: 102 GTT 104
T
Sbjct: 56 VCT 58
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 76
NIK P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 77 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 136
+ C + +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 137 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DI 193
E V +I N + L+R GR+E+ + P ++ R+ + K R +ADD +I
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 194 VKLVDTFPGQS 204
+L + G S
Sbjct: 649 EELAEKTEGYS 659
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
C + +++DA A + G V +++VN L +L GM E P+ +++
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----EEPKDVVVI 593
Query: 146 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVD 198
+ + P L+R GR+++ P ++ R+ + K R+ N+A+D ++ K +
Sbjct: 594 AATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTE 653
Query: 199 TFPGQSID 206
+ G I+
Sbjct: 654 GYTGADIE 661
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 199
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 200 FPGQSI 205
F G +
Sbjct: 338 FNGADL 343
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 199
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 200 FPGQSI 205
F G +
Sbjct: 338 FNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 199
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 200 FPGQSI 205
F G +
Sbjct: 338 FNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 199
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 200 FPGQSI 205
F G +
Sbjct: 338 FNGADL 343
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + + + +N + + EL + GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 86 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 144
C + ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 145 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRNDNVADD-DIVKLVDTF 200
N L + L+R GR+++ + + +E++ + + + R N+ADD D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 201 PGQ--SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
P DF+ AL + + + I+ G I + N K
Sbjct: 1121 PMNLTGADFY-ALASDAMSNAFHERITASINGEINEEEQNQK 1161
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
++ + C + ++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 191
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 192 DIVKLVDTFPGQSI 205
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 170
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Populus euphratica PE=1 SV=1
Length = 32
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 196 LVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEK 255
LVDTFPGQSIDFFGALR E PTFEQP MT+EK
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 146 TGNDFSTLYAPLIRDGRMEKFYWAPT-RED-RIGVCKGIFRNDNVADD-DIVKLVD 198
N F L ++R GR ++ P ED R + + R NV+DD D V+L +
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 350
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 146 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 203
N F L ++R GR ++ P E R + R+ NVADD V L D +
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADD--VDL-DALAEE 353
Query: 204 SIDFFGA 210
D+ GA
Sbjct: 354 LDDYSGA 360
>sp|Q9HRW6|PAN1_HALSA Proteasome-activating nucleotidase 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan1 PE=3
SV=2
Length = 407
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 146 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 184
N F L ++R GR ++ P +G + IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
K + I+++D R + V TLM+ ++ P+
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPS----------SS 161
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 180
PRV ++ + N + L R GR + P EDR+ + +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQ 206
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
++ + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 191
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 192 DIVKLVDTFPGQSI 205
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
IK P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 170
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 199
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 200 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 228
F + F A R V D++ K + VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 86 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 144
+ I+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 145 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCK 180
N L L+R GR ++ P E R+ + K
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILK 359
>sp|B8D065|FTSH_HALOH ATP-dependent zinc metalloprotease FtsH OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=ftsH PE=3 SV=1
Length = 630
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 78
KVP + + G G GK+ V + G+ ++S + G A +R + +
Sbjct: 194 KVPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEMFVGVGASRVRDLFEQG-- 251
Query: 79 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 133
KK C + I++LDA GAG GG + Q +N L V++ G
Sbjct: 252 --KKNAPCIIFIDELDAVGRQRGAGLGGGHDE---REQTLNQLL---------VEMDGF- 296
Query: 134 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD 191
E N + ++ N L L+R GR ++ P + R+G+ K RN VADD
Sbjct: 297 --EPNEGIIVMAATNRPDVLDPALLRPGRFDRQVVVDKPDVKGRMGILKIHLRNKPVADD 354
Query: 192 -DIVKLVDTFPG 202
D+ L PG
Sbjct: 355 VDVEVLAKRTPG 366
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
IK P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 191
+V II+ N L L+R GR+++ P + R+ V K I ++ +V +
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 192 DIVKLVDTF 200
I KL D F
Sbjct: 334 AIAKLADGF 342
>sp|D3EZK2|FTSH3_CONWI ATP-dependent zinc metalloprotease FtsH 3 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH3 PE=3 SV=1
Length = 749
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 78
K+P + + G G GK+ V + G+ MSA E G A +R +R+A
Sbjct: 272 KIPKGVLLSGQPGTGKTLLARAVAGEAGVPFFSMSASEFVEMIVGVGASRVRDLFRQA-- 329
Query: 79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 138
K+ + I++LDA GG N TL I L M E
Sbjct: 330 --KEAAPAIIFIDELDAIGRARGGGRGSFGGNDEREQTLNQI--------LTEMDGFEPT 379
Query: 139 PRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIVK 195
V +I N L A L+R GR ++ AP R R+ + K R+ +ADD D+
Sbjct: 380 TAVIVIAATNRPEILDAALLRPGRFDRRVTVAAPDRNGRLMILKVHTRSVPLADDVDLES 439
Query: 196 LVDTFPG 202
+ + PG
Sbjct: 440 IASSTPG 446
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
+ +++D+ A G +T V ++VN L A+ V L NK V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVIIA 629
Query: 146 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 199
N L L+R GR ++ + P + R + K +N +A+D DI + +
Sbjct: 630 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEG 689
Query: 200 FPGQSID 206
+ G ++
Sbjct: 690 YTGADLE 696
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris GN=PEX1
PE=3 SV=1
Length = 1157
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V A+ G+N I + E+ + G + +R+ + A + K
Sbjct: 838 LYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKP 893
Query: 86 CCLMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 141
C L ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R
Sbjct: 894 CILFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRP 945
Query: 142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDT 199
+I + L+R GR++K P +DR+ + + + RN NV+ V L +
Sbjct: 946 DLIDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SS 993
Query: 200 FPGQSIDFFGA-LRARVYD 217
G+ F GA L+A Y+
Sbjct: 994 VAGECSGFSGADLQALAYN 1012
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELF----DLAKEKAP 247
Query: 86 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 144
+ I+++DA GA R T T ++ V TLM + L M E V II
Sbjct: 248 SIVFIDEIDAIGASR---TEAMTSGDREVQRTLMQL--------LAAMDGFEPRGDVKII 296
Query: 145 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 191
N L A L+R GR ++ P E R + K R N+++D
Sbjct: 297 GATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSED 345
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ V + + + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKQRAP 247
Query: 86 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 144
+ I+++DA GA R TT ++ V TLM + ++ G N+ + V I+
Sbjct: 248 SIIFIDEIDAIGAHRNDSTTS---GDREVQRTLMQL-----LAEMDGFDNRGD---VKIV 296
Query: 145 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 191
N L L+R GR ++ P + R+ + K + N+ +D
Sbjct: 297 AATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGED 345
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ A+ + ++A +L G+ AKL+ R+A + K+
Sbjct: 224 MFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV----RDAFALAKEKSP 279
Query: 86 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 144
+ I++LDA G R ++ V T++ + + QL G + + RV +I
Sbjct: 280 AIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLN-----QLDGFSS---DDRVKVI 328
Query: 145 VTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADDDI 193
N TL L+R GR+++ + P E R+G+ + I DDDI
Sbjct: 329 AATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILR-IHSRKMAIDDDI 378
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + N I + E+ S GE K IR+ +++A K+
Sbjct: 506 LYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKA----KQVAP 561
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
+ ++++D+ A R G T+ V ++VN L + L G+ E V +I
Sbjct: 562 AIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTS---------LDGI---EVMNGVVVIG 609
Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVDT 199
N + L+R GR +K + P +E R+ + K +N +A D DI + +
Sbjct: 610 ATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEG 669
Query: 200 FPGQSID 206
+ G ++
Sbjct: 670 YVGADLE 676
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
++ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 78 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 136
K+ C + I+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 137 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD--- 191
R+ +I N L L+R GR+++ + PT E R + + R NV D
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 192 -DIVKLVDTFPGQSI 205
++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
++ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 78 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 136
K+ C + I+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 137 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD--- 191
R+ +I N L L+R GR+++ + PT E R + + R NV D
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 192 -DIVKLVDTFPGQSI 205
++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
++G G GK+ + V + I + E GE A+L+R+ ++ A K+
Sbjct: 180 LYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLA----KEKAP 235
Query: 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR--VPI 143
+ I++LDA A R T T ++ V T+M + +L G +PR V +
Sbjct: 236 SIIFIDELDAIAARR--TNSDTSGDREVQRTMMQL-----LAELDGF-----DPRGDVKV 283
Query: 144 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 191
I N L ++R GR ++ PT E RI + K R +A+D
Sbjct: 284 IGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAED 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,139,006
Number of Sequences: 539616
Number of extensions: 5772010
Number of successful extensions: 14531
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 14433
Number of HSP's gapped (non-prelim): 292
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)