Query 019694
Match_columns 337
No_of_seqs 333 out of 2367
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 4.7E-73 1E-77 541.2 26.8 284 1-285 128-413 (413)
2 KOG0651 26S proteasome regulat 100.0 5.4E-50 1.2E-54 371.2 13.5 240 1-281 145-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 6.2E-48 1.3E-52 363.9 15.7 178 15-206 179-362 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-43 3E-48 351.2 18.9 238 13-280 537-789 (802)
5 KOG0734 AAA+-type ATPase conta 100.0 7.5E-44 1.6E-48 348.7 10.8 252 15-286 331-593 (752)
6 KOG0741 AAA+-type ATPase [Post 100.0 9.5E-44 2.1E-48 347.7 10.9 305 1-327 226-583 (744)
7 KOG0730 AAA+-type ATPase [Post 100.0 8.1E-42 1.8E-46 342.3 17.9 175 15-206 462-642 (693)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 4.3E-41 9.3E-46 333.5 17.7 197 12-225 214-417 (802)
9 KOG0736 Peroxisome assembly fa 100.0 3E-40 6.5E-45 334.2 19.2 240 15-278 699-950 (953)
10 COG0465 HflB ATP-dependent Zn 100.0 9.9E-39 2.2E-43 322.7 15.0 258 15-286 177-442 (596)
11 KOG0731 AAA+-type ATPase conta 100.0 9.2E-39 2E-43 328.1 14.1 251 6-275 327-597 (774)
12 KOG0735 AAA+-type ATPase [Post 100.0 9.2E-37 2E-41 306.6 16.9 200 15-234 695-900 (952)
13 KOG0727 26S proteasome regulat 100.0 3.4E-37 7.4E-42 279.6 12.5 179 14-206 182-366 (408)
14 KOG0738 AAA+-type ATPase [Post 100.0 3.7E-36 8E-41 286.1 16.1 198 17-232 240-445 (491)
15 KOG0728 26S proteasome regulat 100.0 2.6E-36 5.7E-41 273.6 13.7 180 13-206 173-358 (404)
16 KOG0652 26S proteasome regulat 100.0 1.4E-36 3E-41 276.8 11.7 179 14-206 198-382 (424)
17 KOG0729 26S proteasome regulat 100.0 1.4E-36 3.1E-41 277.4 10.9 178 15-206 205-388 (435)
18 KOG0726 26S proteasome regulat 100.0 1.4E-36 3.1E-41 280.0 10.4 179 15-207 213-397 (440)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 3E-34 6.5E-39 288.3 19.1 175 15-207 253-435 (489)
20 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.3E-34 7.1E-39 312.3 16.1 176 12-207 1621-1848(2281)
21 COG0464 SpoVK ATPases of the A 100.0 1.5E-33 3.2E-38 285.4 19.6 175 17-208 272-454 (494)
22 TIGR01243 CDC48 AAA family ATP 100.0 6.6E-33 1.4E-37 292.6 22.0 177 15-207 481-663 (733)
23 KOG0739 AAA+-type ATPase [Post 100.0 2.9E-34 6.4E-39 265.4 10.2 173 17-207 162-341 (439)
24 KOG0737 AAA+-type ATPase [Post 100.0 7.6E-33 1.6E-37 262.8 17.9 227 17-263 123-359 (386)
25 PTZ00454 26S protease regulato 100.0 1.3E-32 2.9E-37 270.7 15.7 181 13-207 171-357 (398)
26 TIGR03689 pup_AAA proteasome A 100.0 9.9E-32 2.1E-36 270.3 21.7 251 14-281 209-496 (512)
27 CHL00176 ftsH cell division pr 100.0 1.9E-32 4.1E-37 283.0 14.8 236 15-267 210-454 (638)
28 PRK03992 proteasome-activating 100.0 4.7E-32 1E-36 266.8 16.9 180 14-207 158-343 (389)
29 COG1223 Predicted ATPase (AAA+ 100.0 2.4E-32 5.2E-37 248.8 13.4 186 3-206 130-324 (368)
30 TIGR01241 FtsH_fam ATP-depende 100.0 2.9E-32 6.3E-37 276.1 15.0 178 15-208 82-267 (495)
31 KOG0730 AAA+-type ATPase [Post 100.0 7.1E-31 1.5E-35 263.7 17.3 173 15-206 212-391 (693)
32 PTZ00361 26 proteosome regulat 100.0 4.5E-31 9.8E-36 262.0 14.8 179 15-207 211-395 (438)
33 PRK10733 hflB ATP-dependent me 100.0 2.1E-30 4.5E-35 269.5 16.0 178 15-208 179-364 (644)
34 TIGR01242 26Sp45 26S proteasom 100.0 8.8E-30 1.9E-34 248.7 14.4 179 15-207 150-334 (364)
35 KOG0740 AAA+-type ATPase [Post 100.0 3E-29 6.4E-34 245.1 10.8 172 18-206 183-361 (428)
36 KOG0732 AAA+-type ATPase conta 100.0 2.8E-28 6.1E-33 256.8 15.5 177 15-208 293-481 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 5.8E-27 1.3E-31 247.5 20.2 176 15-207 206-387 (733)
38 PF00004 AAA: ATPase family as 99.9 3.3E-24 7.1E-29 177.6 12.2 130 24-170 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.9 2.1E-22 4.6E-27 196.2 16.4 176 10-206 224-408 (457)
40 KOG0744 AAA+-type ATPase [Post 99.8 2.8E-21 6E-26 181.1 6.9 153 18-184 174-341 (423)
41 COG0466 Lon ATP-dependent Lon 99.8 4.8E-20 1E-24 187.5 14.3 147 22-185 351-510 (782)
42 KOG2004 Mitochondrial ATP-depe 99.8 1.7E-19 3.7E-24 182.9 15.6 189 15-236 432-638 (906)
43 KOG0742 AAA+-type ATPase [Post 99.8 1.7E-19 3.6E-24 173.5 12.1 167 20-207 383-583 (630)
44 TIGR00763 lon ATP-dependent pr 99.8 1.2E-17 2.6E-22 177.6 18.5 164 22-202 348-536 (775)
45 TIGR02881 spore_V_K stage V sp 99.7 1.5E-17 3.2E-22 155.5 13.8 146 21-193 42-203 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.7 7.6E-17 1.6E-21 152.9 15.4 150 16-191 51-219 (287)
47 KOG0735 AAA+-type ATPase [Post 99.7 5.6E-17 1.2E-21 164.6 14.8 179 15-208 426-616 (952)
48 TIGR02880 cbbX_cfxQ probable R 99.7 1.3E-16 2.9E-21 151.1 15.8 147 21-193 58-220 (284)
49 COG0464 SpoVK ATPases of the A 99.7 2.7E-16 5.9E-21 159.5 18.5 175 15-208 12-192 (494)
50 KOG0736 Peroxisome assembly fa 99.7 3.7E-16 8E-21 159.9 17.8 175 17-208 427-605 (953)
51 TIGR02639 ClpA ATP-dependent C 99.7 6.3E-16 1.4E-20 163.7 13.2 158 19-202 201-386 (731)
52 PRK10787 DNA-binding ATP-depen 99.6 3.5E-15 7.5E-20 158.4 17.7 163 22-201 350-536 (784)
53 PF05496 RuvB_N: Holliday junc 99.6 1.4E-14 3E-19 131.5 12.4 145 19-190 48-199 (233)
54 PRK05342 clpX ATP-dependent pr 99.6 3.1E-14 6.7E-19 141.1 16.0 103 21-123 108-213 (412)
55 PRK11034 clpA ATP-dependent Cl 99.6 1.2E-14 2.6E-19 153.4 11.2 139 20-184 206-363 (758)
56 PRK05201 hslU ATP-dependent pr 99.6 2.9E-14 6.3E-19 140.1 12.9 154 20-179 49-344 (443)
57 TIGR00390 hslU ATP-dependent p 99.6 2.4E-14 5.2E-19 140.6 12.2 154 20-179 46-342 (441)
58 PRK10865 protein disaggregatio 99.6 2.2E-14 4.8E-19 154.0 12.9 141 19-184 197-355 (857)
59 PRK00080 ruvB Holliday junctio 99.6 4.5E-14 9.9E-19 136.1 13.8 156 19-201 49-216 (328)
60 TIGR00382 clpX endopeptidase C 99.5 8.6E-14 1.9E-18 137.6 14.3 128 21-149 116-247 (413)
61 CHL00095 clpC Clp protease ATP 99.5 9.8E-14 2.1E-18 148.7 15.1 166 17-209 196-395 (821)
62 TIGR03345 VI_ClpV1 type VI sec 99.5 7.7E-14 1.7E-18 149.6 13.9 163 19-208 206-403 (852)
63 TIGR03346 chaperone_ClpB ATP-d 99.5 1.6E-13 3.4E-18 147.7 13.6 159 18-203 191-378 (852)
64 TIGR00635 ruvB Holliday juncti 99.5 3.1E-13 6.8E-18 128.5 13.7 156 19-201 28-195 (305)
65 COG2256 MGS1 ATPase related to 99.5 4.3E-13 9.4E-18 129.7 12.9 123 21-181 48-174 (436)
66 TIGR02640 gas_vesic_GvpN gas v 99.5 1E-12 2.2E-17 123.0 14.9 146 21-183 21-198 (262)
67 PRK04195 replication factor C 99.5 1.2E-12 2.6E-17 132.7 15.9 151 19-202 37-194 (482)
68 PRK13342 recombination factor 99.4 3E-12 6.5E-17 127.4 17.2 141 21-199 36-185 (413)
69 PHA02544 44 clamp loader, smal 99.4 4.5E-12 9.8E-17 121.1 17.5 150 18-201 40-200 (316)
70 PRK07940 DNA polymerase III su 99.4 1.7E-12 3.7E-17 128.1 14.5 155 17-208 32-214 (394)
71 PRK07003 DNA polymerase III su 99.4 2.3E-12 5.1E-17 134.1 16.0 164 7-206 26-219 (830)
72 PRK14956 DNA polymerase III su 99.4 1.6E-12 3.5E-17 130.2 13.8 136 19-188 38-198 (484)
73 PF07724 AAA_2: AAA domain (Cd 99.4 1.3E-13 2.9E-18 121.2 4.0 127 20-152 2-132 (171)
74 PRK14962 DNA polymerase III su 99.4 5E-12 1.1E-16 127.5 15.7 148 19-201 34-209 (472)
75 PRK11034 clpA ATP-dependent Cl 99.4 1.5E-12 3.2E-17 137.8 12.0 142 22-183 489-666 (758)
76 PRK12323 DNA polymerase III su 99.4 2.4E-12 5.2E-17 132.4 13.0 164 8-207 27-225 (700)
77 PRK00149 dnaA chromosomal repl 99.4 1E-12 2.3E-17 132.0 10.0 178 4-212 132-324 (450)
78 KOG1969 DNA replication checkp 99.4 7.2E-12 1.6E-16 128.3 15.4 164 17-202 322-502 (877)
79 COG2255 RuvB Holliday junction 99.4 8.6E-12 1.9E-16 116.0 14.5 157 19-202 50-218 (332)
80 TIGR00362 DnaA chromosomal rep 99.4 1.4E-12 3.1E-17 129.3 9.9 177 5-212 121-312 (405)
81 TIGR01650 PD_CobS cobaltochela 99.4 2.5E-12 5.4E-17 123.3 10.4 146 18-183 61-233 (327)
82 PF07728 AAA_5: AAA domain (dy 99.4 2.2E-12 4.7E-17 108.7 8.5 120 23-163 1-139 (139)
83 PRK14960 DNA polymerase III su 99.4 9.1E-12 2E-16 128.4 14.6 156 6-197 24-206 (702)
84 PLN03025 replication factor C 99.4 4.1E-12 8.9E-17 122.2 11.2 145 23-202 36-192 (319)
85 PRK06893 DNA replication initi 99.4 4.5E-12 9.8E-17 116.4 10.8 145 23-203 41-196 (229)
86 COG1219 ClpX ATP-dependent pro 99.3 4.2E-12 9.1E-17 119.6 9.9 102 22-123 98-202 (408)
87 TIGR02639 ClpA ATP-dependent C 99.3 1.6E-11 3.4E-16 130.3 15.2 140 21-183 483-662 (731)
88 KOG0989 Replication factor C, 99.3 1.2E-11 2.5E-16 116.1 12.2 168 4-205 43-224 (346)
89 TIGR02928 orc1/cdc6 family rep 99.3 4.3E-11 9.3E-16 116.4 16.2 144 19-184 38-213 (365)
90 cd00009 AAA The AAA+ (ATPases 99.3 1.4E-11 3.1E-16 101.7 10.9 127 20-169 18-149 (151)
91 PRK14088 dnaA chromosomal repl 99.3 8.7E-12 1.9E-16 125.0 11.3 177 6-212 117-307 (440)
92 PRK14086 dnaA chromosomal repl 99.3 1.5E-11 3.2E-16 126.4 13.1 162 23-212 316-490 (617)
93 PRK14949 DNA polymerase III su 99.3 3.9E-11 8.5E-16 127.0 15.7 166 8-204 27-217 (944)
94 PRK08691 DNA polymerase III su 99.3 4.5E-11 9.7E-16 124.1 15.2 165 6-200 25-210 (709)
95 PRK14961 DNA polymerase III su 99.3 2.5E-11 5.5E-16 118.8 12.4 148 19-195 36-205 (363)
96 PRK12422 chromosomal replicati 99.3 2.8E-11 6.1E-16 121.4 12.9 164 21-214 141-317 (445)
97 PRK12402 replication factor C 99.3 3.1E-11 6.8E-16 115.8 12.6 153 23-205 38-220 (337)
98 PRK07764 DNA polymerase III su 99.3 7.1E-11 1.5E-15 126.0 16.3 147 7-189 25-198 (824)
99 PRK06645 DNA polymerase III su 99.3 6.6E-11 1.4E-15 120.2 15.2 152 18-198 40-217 (507)
100 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.7E-11 5.9E-16 109.9 11.2 162 5-206 25-197 (226)
101 PRK07994 DNA polymerase III su 99.3 4.8E-11 1.1E-15 123.8 14.4 153 19-206 36-219 (647)
102 smart00382 AAA ATPases associa 99.3 4.5E-11 9.8E-16 97.5 11.4 126 21-169 2-144 (148)
103 PRK00411 cdc6 cell division co 99.3 7.8E-11 1.7E-15 115.9 15.2 143 20-184 54-221 (394)
104 PTZ00112 origin recognition co 99.3 1.4E-10 3.1E-15 121.8 17.1 141 20-185 780-951 (1164)
105 PRK13341 recombination factor 99.3 7.4E-11 1.6E-15 124.4 15.1 143 22-202 53-209 (725)
106 TIGR03345 VI_ClpV1 type VI sec 99.3 1.7E-10 3.7E-15 124.0 17.6 111 19-150 593-719 (852)
107 KOG0745 Putative ATP-dependent 99.2 2.8E-11 6E-16 118.0 10.2 145 22-169 227-383 (564)
108 PRK14958 DNA polymerase III su 99.2 4.5E-11 9.8E-16 121.7 12.2 157 7-199 26-209 (509)
109 PRK14963 DNA polymerase III su 99.2 1.4E-10 2.9E-15 118.1 15.4 137 18-189 33-194 (504)
110 TIGR00678 holB DNA polymerase 99.2 1.1E-10 2.3E-15 103.7 12.5 142 19-198 12-179 (188)
111 PRK05563 DNA polymerase III su 99.2 1.2E-10 2.7E-15 119.9 14.3 145 8-188 27-196 (559)
112 TIGR02902 spore_lonB ATP-depen 99.2 9.8E-11 2.1E-15 120.0 13.5 161 19-194 84-289 (531)
113 PRK14957 DNA polymerase III su 99.2 1.5E-10 3.3E-15 118.3 14.7 145 19-197 36-207 (546)
114 PRK14970 DNA polymerase III su 99.2 1.5E-10 3.2E-15 113.3 13.9 151 19-199 37-198 (367)
115 TIGR02397 dnaX_nterm DNA polym 99.2 1.1E-10 2.4E-15 113.0 12.6 148 18-200 33-208 (355)
116 COG0714 MoxR-like ATPases [Gen 99.2 8.6E-11 1.9E-15 113.5 11.3 146 21-183 43-203 (329)
117 PRK14952 DNA polymerase III su 99.2 4.4E-10 9.6E-15 115.9 17.1 146 6-188 22-195 (584)
118 PRK14964 DNA polymerase III su 99.2 2.2E-10 4.8E-15 115.7 14.5 158 6-200 22-207 (491)
119 PRK08903 DnaA regulatory inact 99.2 1.2E-10 2.7E-15 106.2 11.4 155 6-206 29-195 (227)
120 PRK14951 DNA polymerase III su 99.2 1.9E-10 4.1E-15 119.1 13.8 159 5-200 24-215 (618)
121 PRK05642 DNA replication initi 99.2 1.4E-10 3E-15 106.9 11.6 160 5-203 29-201 (234)
122 PRK08084 DNA replication initi 99.2 3.5E-10 7.7E-15 104.3 14.1 144 22-203 46-202 (235)
123 PRK14959 DNA polymerase III su 99.2 3.1E-10 6.7E-15 117.1 15.1 153 6-195 25-205 (624)
124 PRK14969 DNA polymerase III su 99.2 1.5E-10 3.2E-15 118.5 12.2 137 18-189 35-197 (527)
125 PRK05896 DNA polymerase III su 99.2 2.3E-10 4.9E-15 117.6 13.0 145 17-196 34-206 (605)
126 PRK14965 DNA polymerase III su 99.2 2.5E-10 5.4E-15 118.1 13.0 146 8-189 27-197 (576)
127 PRK10865 protein disaggregatio 99.2 4.6E-10 1E-14 120.9 15.5 141 23-183 600-779 (857)
128 PRK11331 5-methylcytosine-spec 99.2 1.3E-10 2.8E-15 115.5 10.3 138 20-172 193-359 (459)
129 COG0542 clpA ATP-binding subun 99.2 4E-10 8.6E-15 118.1 14.4 112 20-149 519-643 (786)
130 KOG2028 ATPase related to the 99.2 2.5E-10 5.4E-15 109.5 11.3 122 23-181 164-292 (554)
131 CHL00095 clpC Clp protease ATP 99.2 2.8E-10 6E-15 122.3 13.1 113 20-151 537-663 (821)
132 TIGR03346 chaperone_ClpB ATP-d 99.2 1.3E-09 2.8E-14 117.6 18.2 144 20-183 594-776 (852)
133 PRK07133 DNA polymerase III su 99.1 7E-10 1.5E-14 116.1 15.0 142 19-189 38-196 (725)
134 PRK14948 DNA polymerase III su 99.1 8.7E-10 1.9E-14 114.7 15.4 151 19-197 36-209 (620)
135 PRK14953 DNA polymerase III su 99.1 6.3E-10 1.4E-14 112.8 13.8 153 18-199 35-209 (486)
136 PRK14087 dnaA chromosomal repl 99.1 4.9E-10 1.1E-14 112.7 12.9 179 5-212 126-321 (450)
137 PF05673 DUF815: Protein of un 99.1 9.2E-10 2E-14 101.3 13.3 155 2-190 33-214 (249)
138 PRK08727 hypothetical protein; 99.1 1E-09 2.2E-14 101.1 13.6 143 21-202 41-196 (233)
139 PRK00440 rfc replication facto 99.1 1.8E-09 3.9E-14 102.8 15.7 155 7-199 27-192 (319)
140 PHA02244 ATPase-like protein 99.1 3.8E-10 8.2E-15 109.7 10.9 135 21-179 119-269 (383)
141 TIGR02903 spore_lon_C ATP-depe 99.1 2.3E-09 5.1E-14 111.6 17.2 166 19-202 173-386 (615)
142 PRK06620 hypothetical protein; 99.1 6.6E-10 1.4E-14 101.2 11.2 149 4-204 26-183 (214)
143 PRK06305 DNA polymerase III su 99.1 1.2E-09 2.6E-14 110.0 14.1 145 18-197 36-209 (451)
144 KOG0741 AAA+-type ATPase [Post 99.1 4E-10 8.7E-15 112.2 9.4 138 17-174 534-674 (744)
145 COG1220 HslU ATP-dependent pro 99.1 2.2E-09 4.8E-14 102.1 13.7 90 84-179 250-345 (444)
146 PRK05707 DNA polymerase III su 99.1 2.8E-09 6E-14 103.1 14.5 155 18-207 19-203 (328)
147 PF00308 Bac_DnaA: Bacterial d 99.1 6.1E-10 1.3E-14 101.7 9.4 168 3-202 17-200 (219)
148 PRK14955 DNA polymerase III su 99.1 1.3E-09 2.9E-14 108.0 12.2 148 18-194 35-212 (397)
149 PRK09111 DNA polymerase III su 99.1 3E-09 6.6E-14 110.2 15.1 151 7-188 34-209 (598)
150 PRK06647 DNA polymerase III su 99.0 2.5E-09 5.4E-14 110.2 14.2 137 19-189 36-197 (563)
151 COG0470 HolB ATPase involved i 99.0 1.8E-09 3.9E-14 102.8 11.0 122 19-170 22-167 (325)
152 PRK14954 DNA polymerase III su 99.0 5.5E-09 1.2E-13 108.5 15.0 158 6-194 25-212 (620)
153 PRK08451 DNA polymerase III su 99.0 6.2E-09 1.3E-13 106.3 14.1 146 18-198 33-206 (535)
154 PRK14950 DNA polymerase III su 99.0 7E-09 1.5E-13 107.6 14.4 150 19-197 36-208 (585)
155 PRK08116 hypothetical protein; 99.0 1.7E-09 3.6E-14 101.8 8.0 100 20-150 113-221 (268)
156 COG1474 CDC6 Cdc6-related prot 98.9 2.3E-08 5E-13 98.0 15.5 137 20-183 41-203 (366)
157 PRK13407 bchI magnesium chelat 98.9 1.5E-09 3.2E-14 105.1 6.7 84 84-183 128-216 (334)
158 PRK07471 DNA polymerase III su 98.9 3.1E-08 6.7E-13 97.2 15.8 160 18-207 38-238 (365)
159 PRK09112 DNA polymerase III su 98.9 3.2E-08 7E-13 96.5 15.3 161 17-206 41-239 (351)
160 CHL00081 chlI Mg-protoporyphyr 98.9 1.2E-08 2.6E-13 99.2 11.5 84 84-183 144-232 (350)
161 PRK09087 hypothetical protein; 98.9 1.4E-08 3E-13 93.2 11.4 133 22-202 45-187 (226)
162 PRK05564 DNA polymerase III su 98.9 2.5E-08 5.4E-13 95.7 13.5 146 17-197 22-177 (313)
163 smart00350 MCM minichromosome 98.9 3.7E-09 8.1E-14 108.0 6.9 137 23-183 238-400 (509)
164 TIGR02031 BchD-ChlD magnesium 98.9 4.1E-09 8.8E-14 109.3 7.3 144 22-183 17-174 (589)
165 PRK12377 putative replication 98.8 4.4E-09 9.6E-14 97.8 6.2 99 21-150 101-206 (248)
166 PF00158 Sigma54_activat: Sigm 98.8 8.6E-09 1.9E-13 90.5 7.6 122 19-164 20-155 (168)
167 PRK06964 DNA polymerase III su 98.8 7.7E-08 1.7E-12 93.4 14.8 156 19-207 19-225 (342)
168 PF07726 AAA_3: ATPase family 98.8 7.4E-09 1.6E-13 86.5 6.6 116 23-159 1-127 (131)
169 PRK14971 DNA polymerase III su 98.8 4.3E-08 9.3E-13 102.1 13.8 137 18-189 36-199 (614)
170 PRK04132 replication factor C 98.8 3.5E-08 7.6E-13 105.3 13.0 143 25-201 568-722 (846)
171 PRK08181 transposase; Validate 98.8 4E-09 8.6E-14 99.3 4.5 101 20-150 105-209 (269)
172 PRK07952 DNA replication prote 98.8 9.5E-09 2.1E-13 95.4 7.0 99 21-150 99-205 (244)
173 TIGR02442 Cob-chelat-sub cobal 98.8 1.1E-08 2.3E-13 107.2 8.1 144 22-183 26-214 (633)
174 PRK08769 DNA polymerase III su 98.8 1.1E-07 2.5E-12 91.5 13.6 160 17-208 22-209 (319)
175 TIGR02030 BchI-ChlI magnesium 98.8 2.7E-08 5.8E-13 96.5 9.1 85 83-183 130-219 (337)
176 PRK06871 DNA polymerase III su 98.8 1E-07 2.2E-12 92.0 12.6 162 18-207 21-203 (325)
177 COG2607 Predicted ATPase (AAA+ 98.7 2.4E-07 5.2E-12 84.8 14.1 154 2-190 66-246 (287)
178 PRK06526 transposase; Provisio 98.7 6.4E-09 1.4E-13 97.1 4.0 74 18-96 95-171 (254)
179 COG0542 clpA ATP-binding subun 98.7 4.6E-08 9.9E-13 102.9 10.6 140 19-183 189-346 (786)
180 TIGR00602 rad24 checkpoint pro 98.7 2.1E-07 4.5E-12 97.0 14.4 43 9-51 96-140 (637)
181 PF01695 IstB_IS21: IstB-like 98.7 1E-08 2.2E-13 90.8 3.8 71 18-94 44-118 (178)
182 PRK07399 DNA polymerase III su 98.7 3.1E-07 6.7E-12 88.4 14.1 162 18-208 23-222 (314)
183 PRK08939 primosomal protein Dn 98.7 3.8E-08 8.3E-13 94.3 7.6 68 20-95 155-228 (306)
184 TIGR02974 phageshock_pspF psp 98.7 4.9E-08 1.1E-12 94.5 8.2 133 20-175 21-175 (329)
185 PRK06921 hypothetical protein; 98.7 9E-08 1.9E-12 90.0 9.4 68 20-95 116-188 (266)
186 PRK08058 DNA polymerase III su 98.7 2.4E-07 5.2E-12 89.7 12.6 136 17-191 24-186 (329)
187 PRK06835 DNA replication prote 98.7 3.8E-08 8.2E-13 95.2 6.9 67 22-95 184-257 (329)
188 PRK13531 regulatory ATPase Rav 98.7 7.3E-08 1.6E-12 96.9 9.0 137 21-182 39-193 (498)
189 PRK07993 DNA polymerase III su 98.7 1.8E-07 4E-12 90.7 11.4 160 17-207 20-204 (334)
190 PF00910 RNA_helicase: RNA hel 98.6 9.5E-08 2.1E-12 77.4 7.7 23 24-46 1-23 (107)
191 TIGR03015 pepcterm_ATPase puta 98.6 1.7E-06 3.8E-11 80.4 17.0 76 21-96 43-135 (269)
192 PRK06090 DNA polymerase III su 98.6 8.7E-07 1.9E-11 85.3 14.9 160 17-208 21-202 (319)
193 COG0593 DnaA ATPase involved i 98.6 2.6E-07 5.6E-12 91.2 11.4 177 4-212 97-288 (408)
194 PRK11608 pspF phage shock prot 98.6 2E-07 4.4E-12 90.1 10.2 133 20-175 28-182 (326)
195 COG1224 TIP49 DNA helicase TIP 98.6 1.2E-07 2.5E-12 91.1 7.4 60 17-77 61-122 (450)
196 PRK08699 DNA polymerase III su 98.6 4E-07 8.7E-12 88.0 10.9 134 19-181 19-183 (325)
197 PRK09183 transposase/IS protei 98.6 5.3E-08 1.2E-12 91.2 4.6 74 18-96 99-176 (259)
198 COG2812 DnaX DNA polymerase II 98.6 4E-07 8.7E-12 92.3 11.0 167 6-202 25-212 (515)
199 TIGR01817 nifA Nif-specific re 98.5 3.3E-07 7.2E-12 94.2 9.2 132 20-175 218-372 (534)
200 PF03969 AFG1_ATPase: AFG1-lik 98.5 2.5E-07 5.4E-12 90.6 7.6 32 16-47 57-88 (362)
201 COG1484 DnaC DNA replication p 98.5 9E-07 2E-11 82.7 10.9 67 20-94 104-177 (254)
202 PF13177 DNA_pol3_delta2: DNA 98.5 4.3E-07 9.4E-12 79.1 8.1 113 18-159 16-151 (162)
203 PF06068 TIP49: TIP49 C-termin 98.5 1.8E-07 3.8E-12 90.8 5.9 56 20-76 49-106 (398)
204 PRK11388 DNA-binding transcrip 98.5 2E-07 4.3E-12 97.8 6.8 132 21-176 348-499 (638)
205 PRK15424 propionate catabolism 98.4 4.6E-07 9.9E-12 93.0 8.0 133 20-176 241-405 (538)
206 PF13173 AAA_14: AAA domain 98.4 8.4E-07 1.8E-11 73.9 8.1 70 21-96 2-73 (128)
207 PRK05022 anaerobic nitric oxid 98.4 5.8E-07 1.3E-11 91.9 8.6 132 20-175 209-363 (509)
208 TIGR00368 Mg chelatase-related 98.4 5.4E-07 1.2E-11 91.8 8.2 25 21-45 211-235 (499)
209 cd01120 RecA-like_NTPases RecA 98.4 9.8E-07 2.1E-11 74.6 8.2 73 24-98 2-99 (165)
210 PF03215 Rad17: Rad17 cell cyc 98.4 5.5E-06 1.2E-10 84.8 14.8 45 8-52 30-76 (519)
211 PF05729 NACHT: NACHT domain 98.4 4.1E-06 8.9E-11 71.3 11.7 145 22-185 1-165 (166)
212 PF13401 AAA_22: AAA domain; P 98.4 3.2E-07 7E-12 75.7 4.4 74 21-97 4-100 (131)
213 PRK15429 formate hydrogenlyase 98.4 1.9E-06 4.1E-11 91.3 11.1 132 20-177 398-554 (686)
214 KOG1514 Origin recognition com 98.4 3E-06 6.5E-11 87.5 11.9 136 23-186 424-592 (767)
215 COG1221 PspF Transcriptional r 98.4 3.6E-07 7.8E-12 90.0 5.1 130 21-175 101-252 (403)
216 PF01078 Mg_chelatase: Magnesi 98.4 5.2E-08 1.1E-12 87.8 -1.0 25 21-45 22-46 (206)
217 TIGR02329 propionate_PrpR prop 98.4 1.4E-06 3.1E-11 89.3 9.1 135 20-176 234-390 (526)
218 PTZ00111 DNA replication licen 98.3 1.1E-06 2.4E-11 94.0 8.3 135 21-179 492-653 (915)
219 PRK10820 DNA-binding transcrip 98.3 7.6E-06 1.6E-10 84.0 13.8 159 21-203 227-422 (520)
220 KOG0991 Replication factor C, 98.3 7.5E-07 1.6E-11 81.4 5.5 134 23-190 50-192 (333)
221 PF00931 NB-ARC: NB-ARC domain 98.3 1.4E-05 3.1E-10 74.7 14.4 26 19-44 17-42 (287)
222 KOG1051 Chaperone HSP104 and r 98.3 3.1E-06 6.8E-11 90.4 10.9 112 19-151 589-712 (898)
223 smart00763 AAA_PrkA PrkA AAA d 98.3 1.5E-06 3.3E-11 84.6 7.7 74 1-75 56-143 (361)
224 PLN03210 Resistant to P. syrin 98.3 2.2E-05 4.8E-10 87.7 17.6 152 18-203 204-391 (1153)
225 KOG1968 Replication factor C, 98.3 1.2E-06 2.7E-11 93.8 6.8 156 23-206 359-526 (871)
226 PF12775 AAA_7: P-loop contain 98.3 6.4E-07 1.4E-11 84.5 3.9 141 21-183 33-193 (272)
227 PRK09862 putative ATP-dependen 98.3 2.6E-06 5.7E-11 86.7 8.2 130 21-173 210-391 (506)
228 COG1239 ChlI Mg-chelatase subu 98.3 1E-05 2.2E-10 79.6 12.0 147 21-185 38-234 (423)
229 PF05621 TniB: Bacterial TniB 98.2 2E-05 4.4E-10 74.9 13.3 203 6-239 46-284 (302)
230 PF14532 Sigma54_activ_2: Sigm 98.2 2.1E-06 4.5E-11 72.5 5.8 59 21-97 21-82 (138)
231 COG1618 Predicted nucleotide k 98.2 1.2E-05 2.7E-10 69.6 10.6 29 18-46 2-30 (179)
232 PF12774 AAA_6: Hydrolytic ATP 98.2 2E-05 4.3E-10 72.7 12.5 141 19-179 30-176 (231)
233 PRK15115 response regulator Gl 98.2 3.8E-06 8.3E-11 84.0 7.7 132 21-176 157-311 (444)
234 PHA02624 large T antigen; Prov 98.2 1.1E-05 2.3E-10 83.1 10.8 139 15-178 425-569 (647)
235 PF06309 Torsin: Torsin; Inte 98.2 1.6E-05 3.6E-10 66.3 10.0 43 3-45 35-77 (127)
236 PF00493 MCM: MCM2/3/5 family 98.1 2.3E-06 4.9E-11 83.0 4.6 135 21-184 57-222 (331)
237 TIGR02237 recomb_radB DNA repa 98.1 2E-05 4.3E-10 70.8 10.2 83 16-98 7-111 (209)
238 PF13207 AAA_17: AAA domain; P 98.1 2.4E-06 5.2E-11 69.7 3.9 31 24-54 2-32 (121)
239 PF01637 Arch_ATPase: Archaeal 98.1 5.7E-05 1.2E-09 67.7 13.2 26 20-45 19-44 (234)
240 PHA02774 E1; Provisional 98.1 1.6E-05 3.5E-10 81.5 10.5 116 5-154 420-537 (613)
241 KOG2227 Pre-initiation complex 98.1 0.00011 2.4E-09 73.2 15.3 170 6-202 159-363 (529)
242 PRK10923 glnG nitrogen regulat 98.1 9.1E-06 2E-10 81.9 8.0 134 20-176 160-315 (469)
243 cd01124 KaiC KaiC is a circadi 98.1 4.1E-05 9E-10 67.0 11.3 32 24-55 2-36 (187)
244 PRK11361 acetoacetate metaboli 98.1 2.1E-05 4.6E-10 78.8 10.1 131 21-175 166-319 (457)
245 COG3829 RocR Transcriptional r 98.1 4.2E-06 9.1E-11 84.5 4.8 125 17-163 264-401 (560)
246 PHA00729 NTP-binding motif con 98.0 6.6E-06 1.4E-10 75.4 5.4 27 22-48 18-44 (226)
247 PRK00131 aroK shikimate kinase 98.0 6.3E-06 1.4E-10 71.2 4.7 34 19-52 2-35 (175)
248 KOG2170 ATPase of the AAA+ sup 98.0 1.8E-05 3.9E-10 74.8 7.6 92 3-97 92-191 (344)
249 PRK09376 rho transcription ter 98.0 1.5E-05 3.3E-10 78.5 7.4 74 24-97 172-269 (416)
250 COG2204 AtoC Response regulato 98.0 1.4E-05 3E-10 80.3 7.0 108 20-149 163-285 (464)
251 PF13671 AAA_33: AAA domain; P 98.0 9E-06 2E-10 68.1 4.6 33 24-58 2-34 (143)
252 KOG2035 Replication factor C, 98.0 0.00032 6.9E-09 65.9 15.0 144 23-195 36-212 (351)
253 TIGR02915 PEP_resp_reg putativ 98.0 3.2E-05 6.9E-10 77.4 9.2 134 21-177 162-317 (445)
254 KOG1970 Checkpoint RAD17-RFC c 98.0 4.3E-05 9.2E-10 77.3 9.8 45 8-53 93-142 (634)
255 KOG1942 DNA helicase, TBP-inte 97.9 8.8E-06 1.9E-10 76.7 4.5 57 20-77 63-121 (456)
256 PRK08118 topology modulation p 97.9 3E-05 6.5E-10 67.8 7.6 34 22-55 2-35 (167)
257 PF03266 NTPase_1: NTPase; In 97.9 5.3E-06 1.2E-10 72.8 2.7 22 24-45 2-23 (168)
258 PRK09361 radB DNA repair and r 97.9 2.8E-05 6E-10 70.8 7.6 40 16-55 18-60 (225)
259 cd00227 CPT Chloramphenicol (C 97.9 2.7E-05 5.8E-10 68.3 6.6 35 21-55 2-36 (175)
260 cd01128 rho_factor Transcripti 97.9 3.8E-05 8.3E-10 71.6 7.8 78 20-97 15-116 (249)
261 PRK07261 topology modulation p 97.9 3.6E-05 7.8E-10 67.5 7.3 42 23-64 2-43 (171)
262 TIGR01818 ntrC nitrogen regula 97.9 7E-06 1.5E-10 82.5 3.1 132 20-175 156-310 (463)
263 PRK11823 DNA repair protein Ra 97.9 0.00013 2.7E-09 73.7 12.0 79 16-98 75-170 (446)
264 PRK05917 DNA polymerase III su 97.9 5.2E-05 1.1E-09 72.1 8.6 120 17-165 15-148 (290)
265 TIGR02012 tigrfam_recA protein 97.9 5E-05 1.1E-09 73.2 8.6 84 16-99 50-148 (321)
266 COG1485 Predicted ATPase [Gene 97.9 7.3E-05 1.6E-09 72.2 9.5 31 18-48 62-92 (367)
267 KOG0990 Replication factor C, 97.9 2.3E-05 5.1E-10 74.5 5.9 133 23-186 64-206 (360)
268 PRK13947 shikimate kinase; Pro 97.8 5.9E-05 1.3E-09 65.4 7.7 41 23-65 3-43 (171)
269 PRK06762 hypothetical protein; 97.8 2.8E-05 6E-10 67.3 5.5 38 21-58 2-39 (166)
270 TIGR01618 phage_P_loop phage n 97.8 2.5E-05 5.5E-10 71.4 5.0 23 20-42 11-33 (220)
271 cd01121 Sms Sms (bacterial rad 97.8 0.00021 4.6E-09 70.4 11.7 78 17-98 78-172 (372)
272 PRK13406 bchD magnesium chelat 97.8 0.00059 1.3E-08 70.9 15.5 143 9-169 11-166 (584)
273 cd03283 ABC_MutS-like MutS-lik 97.8 0.00017 3.7E-09 64.9 10.0 23 21-43 25-47 (199)
274 cd00983 recA RecA is a bacter 97.8 0.00019 4.1E-09 69.3 10.8 83 16-99 50-148 (325)
275 PRK03839 putative kinase; Prov 97.8 2.2E-05 4.7E-10 69.0 3.9 31 23-53 2-32 (180)
276 PRK06067 flagellar accessory p 97.8 0.00011 2.4E-09 67.3 8.7 82 16-97 20-133 (234)
277 PRK07132 DNA polymerase III su 97.7 0.00057 1.2E-08 65.4 13.5 139 5-181 4-160 (299)
278 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00033 7.1E-09 63.7 11.3 22 21-42 29-50 (213)
279 PLN02200 adenylate kinase fami 97.7 3.4E-05 7.4E-10 71.2 4.9 41 16-58 38-78 (234)
280 cd02021 GntK Gluconate kinase 97.7 0.00012 2.7E-09 62.0 8.0 33 24-58 2-34 (150)
281 COG3604 FhlA Transcriptional r 97.7 3.9E-05 8.4E-10 76.9 5.3 125 18-164 243-379 (550)
282 cd00464 SK Shikimate kinase (S 97.7 3.4E-05 7.4E-10 65.4 4.1 30 24-53 2-31 (154)
283 KOG3347 Predicted nucleotide k 97.7 2.9E-05 6.4E-10 66.4 3.4 32 23-54 9-40 (176)
284 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 3.4E-05 7.3E-10 67.7 3.9 33 24-58 2-34 (183)
285 cd01394 radB RadB. The archaea 97.7 0.00015 3.2E-09 65.6 8.2 40 16-55 14-56 (218)
286 PRK00625 shikimate kinase; Pro 97.7 3.7E-05 7.9E-10 67.8 4.0 31 23-53 2-32 (173)
287 TIGR01313 therm_gnt_kin carboh 97.7 0.00014 3E-09 62.7 7.6 32 24-57 1-32 (163)
288 PRK08233 hypothetical protein; 97.7 0.00017 3.7E-09 62.8 8.3 26 21-46 3-28 (182)
289 PRK10365 transcriptional regul 97.7 0.00011 2.4E-09 73.2 7.7 131 21-175 162-315 (441)
290 PRK14531 adenylate kinase; Pro 97.7 4.8E-05 1E-09 67.2 4.5 31 21-51 2-32 (183)
291 PRK13695 putative NTPase; Prov 97.7 0.0003 6.4E-09 61.5 9.5 23 23-45 2-24 (174)
292 COG0563 Adk Adenylate kinase a 97.7 4E-05 8.7E-10 67.9 3.9 35 23-59 2-36 (178)
293 PRK08533 flagellar accessory p 97.7 0.00028 6.1E-09 64.9 9.5 39 16-54 19-60 (230)
294 PRK14532 adenylate kinase; Pro 97.7 4.1E-05 8.9E-10 67.6 3.8 34 23-58 2-35 (188)
295 PHA02530 pseT polynucleotide k 97.7 0.00014 3.1E-09 68.9 7.8 36 21-57 2-37 (300)
296 PRK06696 uridine kinase; Valid 97.6 9.8E-05 2.1E-09 67.4 6.4 55 3-58 5-62 (223)
297 PRK09354 recA recombinase A; P 97.6 0.00019 4.2E-09 69.9 8.5 83 16-99 55-153 (349)
298 cd01131 PilT Pilus retraction 97.6 0.00011 2.4E-09 65.9 6.4 67 23-93 3-83 (198)
299 PRK07276 DNA polymerase III su 97.6 0.0013 2.8E-08 62.7 13.8 133 17-180 20-172 (290)
300 PRK15455 PrkA family serine pr 97.6 8.8E-05 1.9E-09 76.2 6.1 56 1-57 81-140 (644)
301 PF06745 KaiC: KaiC; InterPro 97.6 0.00027 6E-09 64.2 8.8 81 16-96 14-127 (226)
302 cd02027 APSK Adenosine 5'-phos 97.6 0.00019 4E-09 61.5 7.1 34 24-57 2-38 (149)
303 cd02020 CMPK Cytidine monophos 97.6 5.7E-05 1.2E-09 63.3 3.8 30 24-53 2-31 (147)
304 PRK13948 shikimate kinase; Pro 97.6 7.1E-05 1.5E-09 66.5 4.5 35 19-53 8-42 (182)
305 PRK14527 adenylate kinase; Pro 97.6 5.9E-05 1.3E-09 67.0 4.0 33 18-50 3-35 (191)
306 cd01428 ADK Adenylate kinase ( 97.6 5.7E-05 1.2E-09 66.6 3.8 32 24-57 2-33 (194)
307 PRK13949 shikimate kinase; Pro 97.6 6.5E-05 1.4E-09 65.8 3.9 32 22-53 2-33 (169)
308 KOG0478 DNA replication licens 97.6 7.5E-05 1.6E-09 77.1 4.8 135 18-173 459-616 (804)
309 PF01583 APS_kinase: Adenylyls 97.6 0.00029 6.2E-09 61.1 7.7 41 21-61 2-45 (156)
310 PTZ00088 adenylate kinase 1; P 97.6 8.7E-05 1.9E-09 68.4 4.8 34 19-52 4-37 (229)
311 PRK05818 DNA polymerase III su 97.6 0.00063 1.4E-08 63.7 10.4 125 19-172 5-147 (261)
312 COG5271 MDN1 AAA ATPase contai 97.6 0.00029 6.2E-09 78.8 9.2 148 19-186 1541-1706(4600)
313 PRK06547 hypothetical protein; 97.6 8.4E-05 1.8E-09 65.4 4.4 43 19-63 13-55 (172)
314 PF05707 Zot: Zonular occluden 97.5 0.00017 3.7E-09 64.4 6.3 122 23-169 2-143 (193)
315 PRK06217 hypothetical protein; 97.5 7.7E-05 1.7E-09 65.9 4.0 31 23-53 3-33 (183)
316 PRK04040 adenylate kinase; Pro 97.5 8.3E-05 1.8E-09 66.4 4.2 30 20-49 1-32 (188)
317 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.0005 1.1E-08 62.7 9.3 82 16-97 14-128 (235)
318 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00035 7.7E-09 64.3 8.3 82 16-97 16-139 (237)
319 PF05272 VirE: Virulence-assoc 97.5 0.00041 8.9E-09 62.5 8.5 30 15-44 46-75 (198)
320 COG1241 MCM2 Predicted ATPase 97.5 5.4E-05 1.2E-09 79.3 3.1 137 22-178 320-478 (682)
321 cd00984 DnaB_C DnaB helicase C 97.5 0.00099 2.2E-08 61.0 11.2 39 17-55 9-51 (242)
322 COG3854 SpoIIIAA ncharacterize 97.5 0.00019 4.1E-09 65.8 6.0 72 22-93 138-227 (308)
323 PRK14530 adenylate kinase; Pro 97.5 8.9E-05 1.9E-09 67.2 3.9 30 23-52 5-34 (215)
324 TIGR02858 spore_III_AA stage I 97.5 0.00015 3.2E-09 68.4 5.4 25 22-46 112-136 (270)
325 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00023 5E-09 66.0 6.6 34 24-57 2-38 (249)
326 TIGR01360 aden_kin_iso1 adenyl 97.5 0.00011 2.4E-09 64.4 4.2 29 22-50 4-32 (188)
327 PRK08154 anaerobic benzoate ca 97.5 0.00016 3.4E-09 69.5 5.6 50 4-53 115-165 (309)
328 PRK04296 thymidine kinase; Pro 97.5 0.00036 7.9E-09 62.2 7.5 70 22-94 3-88 (190)
329 COG1102 Cmk Cytidylate kinase 97.5 9.3E-05 2E-09 64.2 3.4 28 24-51 3-30 (179)
330 TIGR00767 rho transcription te 97.5 0.00034 7.4E-09 69.2 7.7 75 23-97 170-268 (415)
331 PF13521 AAA_28: AAA domain; P 97.5 0.00015 3.3E-09 62.6 4.6 26 24-50 2-27 (163)
332 cd01393 recA_like RecA is a b 97.5 0.00079 1.7E-08 61.0 9.5 30 16-45 14-43 (226)
333 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0013 2.8E-08 57.3 10.3 73 23-95 4-106 (159)
334 smart00534 MUTSac ATPase domai 97.4 0.0012 2.7E-08 58.4 10.4 19 24-42 2-20 (185)
335 PRK14528 adenylate kinase; Pro 97.4 0.00014 3.1E-09 64.6 4.2 31 22-52 2-32 (186)
336 TIGR00416 sms DNA repair prote 97.4 0.0016 3.6E-08 65.8 12.4 82 16-97 89-183 (454)
337 PRK02496 adk adenylate kinase; 97.4 0.00013 2.8E-09 64.3 3.9 30 23-52 3-32 (184)
338 PRK05973 replicative DNA helic 97.4 0.0025 5.3E-08 59.1 12.4 40 16-55 59-101 (237)
339 PRK13946 shikimate kinase; Pro 97.4 0.00014 3.1E-09 64.3 4.1 34 20-53 9-42 (184)
340 TIGR01351 adk adenylate kinase 97.4 0.00013 2.8E-09 65.9 3.8 28 24-51 2-29 (210)
341 PRK09519 recA DNA recombinatio 97.4 0.00052 1.1E-08 73.2 8.9 83 16-98 55-152 (790)
342 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00024 5.1E-09 60.0 5.2 31 18-48 19-49 (133)
343 PRK03731 aroL shikimate kinase 97.4 0.00016 3.5E-09 62.7 4.3 32 22-53 3-34 (171)
344 COG1936 Predicted nucleotide k 97.4 0.00012 2.6E-09 64.2 3.2 30 23-53 2-31 (180)
345 cd01122 GP4d_helicase GP4d_hel 97.4 0.00064 1.4E-08 63.4 8.5 39 16-54 25-67 (271)
346 PRK00279 adk adenylate kinase; 97.4 0.00015 3.3E-09 65.7 4.0 32 24-57 3-34 (215)
347 PRK12608 transcription termina 97.4 0.00047 1E-08 67.7 7.6 74 24-97 136-233 (380)
348 cd02019 NK Nucleoside/nucleoti 97.4 0.00044 9.6E-09 51.4 5.8 31 24-54 2-33 (69)
349 cd00544 CobU Adenosylcobinamid 97.4 0.0009 1.9E-08 58.8 8.7 33 24-56 2-34 (169)
350 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.00057 1.2E-08 64.0 7.8 81 16-96 31-143 (259)
351 cd03238 ABC_UvrA The excision 97.4 0.0019 4.2E-08 57.0 10.7 27 18-44 18-44 (176)
352 PRK01184 hypothetical protein; 97.4 0.00018 3.9E-09 63.3 4.1 30 22-52 2-31 (184)
353 COG0703 AroK Shikimate kinase 97.4 0.00019 4E-09 63.1 4.0 42 22-65 3-44 (172)
354 PF13245 AAA_19: Part of AAA d 97.3 0.00033 7.2E-09 53.3 4.8 34 22-55 11-51 (76)
355 COG4619 ABC-type uncharacteriz 97.3 0.001 2.2E-08 58.5 8.3 26 19-44 27-52 (223)
356 PRK05057 aroK shikimate kinase 97.3 0.00023 4.9E-09 62.5 4.3 34 21-54 4-37 (172)
357 PF13191 AAA_16: AAA ATPase do 97.3 0.00024 5.3E-09 61.7 4.5 48 9-56 12-62 (185)
358 PF06414 Zeta_toxin: Zeta toxi 97.3 0.0008 1.7E-08 60.2 7.9 44 17-60 11-55 (199)
359 PF08433 KTI12: Chromatin asso 97.3 0.00054 1.2E-08 64.6 7.1 70 24-94 4-80 (270)
360 KOG2383 Predicted ATPase [Gene 97.3 0.00038 8.2E-09 68.3 5.8 27 19-45 112-138 (467)
361 PLN02674 adenylate kinase 97.3 0.00035 7.5E-09 65.0 5.4 38 19-58 29-66 (244)
362 TIGR00764 lon_rel lon-related 97.3 0.00029 6.4E-09 73.6 5.5 55 22-76 38-102 (608)
363 TIGR01420 pilT_fam pilus retra 97.3 0.00054 1.2E-08 66.8 7.0 69 21-93 122-204 (343)
364 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.2E-09 58.4 3.2 22 24-45 1-22 (129)
365 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0026 5.6E-08 57.8 10.9 40 16-55 11-53 (224)
366 cd03115 SRP The signal recogni 97.3 0.0012 2.5E-08 57.5 8.3 33 23-55 2-37 (173)
367 PRK05800 cobU adenosylcobinami 97.3 0.00081 1.8E-08 59.1 7.2 34 23-56 3-36 (170)
368 COG3283 TyrR Transcriptional r 97.3 0.00068 1.5E-08 65.8 7.1 103 24-150 230-344 (511)
369 KOG0480 DNA replication licens 97.3 0.00036 7.7E-09 71.8 5.5 140 20-183 377-542 (764)
370 PRK04182 cytidylate kinase; Pr 97.3 0.00027 5.8E-09 61.4 4.0 29 23-51 2-30 (180)
371 TIGR02236 recomb_radA DNA repa 97.3 0.00091 2E-08 64.0 8.0 41 16-56 90-139 (310)
372 PF00406 ADK: Adenylate kinase 97.3 0.00019 4E-09 61.3 2.9 31 26-58 1-31 (151)
373 cd03243 ABC_MutS_homologs The 97.2 0.0034 7.5E-08 56.2 11.1 22 21-42 29-50 (202)
374 PRK05541 adenylylsulfate kinas 97.2 0.0013 2.7E-08 57.5 7.8 40 18-57 4-46 (176)
375 TIGR02238 recomb_DMC1 meiotic 97.2 0.0014 3E-08 63.1 8.8 28 16-43 91-118 (313)
376 PF00448 SRP54: SRP54-type pro 97.2 0.0012 2.6E-08 59.3 7.8 35 21-55 1-38 (196)
377 PRK04301 radA DNA repair and r 97.2 0.0019 4.1E-08 62.2 9.7 30 16-45 97-126 (317)
378 PRK12339 2-phosphoglycerate ki 97.2 0.00033 7.1E-09 63.1 4.1 30 20-49 2-31 (197)
379 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.004 8.6E-08 56.3 11.2 24 19-42 27-50 (204)
380 PLN03187 meiotic recombination 97.2 0.0026 5.7E-08 62.0 10.7 28 16-43 121-148 (344)
381 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0027 5.9E-08 56.8 10.1 21 22-42 29-49 (200)
382 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00067 1.5E-08 65.7 6.4 71 21-92 162-240 (325)
383 cd03284 ABC_MutS1 MutS1 homolo 97.2 0.0031 6.8E-08 57.4 10.3 22 22-43 31-52 (216)
384 PRK14526 adenylate kinase; Pro 97.2 0.00035 7.5E-09 63.6 4.0 32 24-57 3-34 (211)
385 TIGR02688 conserved hypothetic 97.2 0.0018 3.8E-08 64.6 9.2 27 18-44 206-232 (449)
386 TIGR02173 cyt_kin_arch cytidyl 97.2 0.00037 8E-09 60.0 4.0 29 23-51 2-30 (171)
387 PRK13764 ATPase; Provisional 97.2 0.00051 1.1E-08 71.4 5.3 28 19-46 255-282 (602)
388 TIGR00455 apsK adenylylsulfate 97.2 0.0017 3.7E-08 57.1 8.0 41 18-58 15-58 (184)
389 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0022 4.8E-08 54.9 8.4 28 19-46 23-50 (157)
390 PRK00889 adenylylsulfate kinas 97.1 0.0014 3E-08 57.2 7.2 37 20-56 3-42 (175)
391 PF13086 AAA_11: AAA domain; P 97.1 0.00033 7.3E-09 62.6 3.3 23 23-45 19-41 (236)
392 PRK14974 cell division protein 97.1 0.0018 3.8E-08 63.0 8.5 36 20-55 139-177 (336)
393 COG4650 RtcR Sigma54-dependent 97.1 0.00028 6.2E-09 66.8 2.8 77 20-96 207-294 (531)
394 PRK12338 hypothetical protein; 97.1 0.00048 1E-08 66.3 4.4 32 19-50 2-33 (319)
395 PRK03846 adenylylsulfate kinas 97.1 0.0018 3.9E-08 57.9 7.9 39 19-57 22-63 (198)
396 TIGR02525 plasmid_TraJ plasmid 97.1 0.0011 2.4E-08 65.3 6.8 69 22-94 150-235 (372)
397 cd03216 ABC_Carb_Monos_I This 97.1 0.0033 7.1E-08 54.5 9.0 28 18-45 23-50 (163)
398 PRK05480 uridine/cytidine kina 97.1 0.00079 1.7E-08 60.5 5.2 38 19-56 4-42 (209)
399 PRK05986 cob(I)alamin adenolsy 97.1 0.0041 8.8E-08 55.7 9.5 74 22-95 23-126 (191)
400 PRK04328 hypothetical protein; 97.1 0.00095 2.1E-08 62.1 5.7 39 16-54 18-59 (249)
401 PLN02459 probable adenylate ki 97.1 0.00073 1.6E-08 63.4 4.9 34 22-57 30-63 (261)
402 PF01745 IPT: Isopentenyl tran 97.1 0.00068 1.5E-08 61.6 4.5 41 22-62 2-42 (233)
403 PF14516 AAA_35: AAA-like doma 97.1 0.03 6.5E-07 54.3 16.3 40 20-59 30-72 (331)
404 cd01130 VirB11-like_ATPase Typ 97.1 0.0013 2.8E-08 58.3 6.2 29 18-46 22-50 (186)
405 PRK04220 2-phosphoglycerate ki 97.0 0.00086 1.9E-08 64.1 5.2 37 17-54 88-124 (301)
406 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0039 8.4E-08 54.0 8.8 23 21-43 21-43 (162)
407 PRK14722 flhF flagellar biosyn 97.0 0.001 2.2E-08 65.5 5.7 27 19-45 135-161 (374)
408 TIGR02782 TrbB_P P-type conjug 97.0 0.00097 2.1E-08 63.8 5.4 70 20-93 131-213 (299)
409 PRK13900 type IV secretion sys 97.0 0.0012 2.5E-08 64.2 6.0 72 19-94 158-245 (332)
410 PF01443 Viral_helicase1: Vira 97.0 0.00025 5.4E-09 64.3 1.2 22 24-45 1-22 (234)
411 PRK09302 circadian clock prote 97.0 0.0044 9.6E-08 63.5 10.5 82 16-97 26-143 (509)
412 PRK05537 bifunctional sulfate 97.0 0.0028 6.1E-08 65.8 9.1 47 17-63 388-438 (568)
413 PRK14529 adenylate kinase; Pro 97.0 0.00059 1.3E-08 62.6 3.6 35 24-60 3-37 (223)
414 PRK04841 transcriptional regul 97.0 0.017 3.6E-07 62.8 15.3 35 19-54 30-64 (903)
415 COG2074 2-phosphoglycerate kin 97.0 0.00076 1.6E-08 62.5 4.1 48 3-50 68-118 (299)
416 PTZ00202 tuzin; Provisional 97.0 0.005 1.1E-07 61.8 10.0 43 13-55 278-320 (550)
417 PTZ00035 Rad51 protein; Provis 97.0 0.0045 9.8E-08 60.2 9.7 29 16-44 113-141 (337)
418 COG0529 CysC Adenylylsulfate k 97.0 0.0036 7.7E-08 55.3 8.0 58 19-76 21-88 (197)
419 TIGR00708 cobA cob(I)alamin ad 97.0 0.0062 1.3E-07 53.7 9.6 73 23-95 7-108 (173)
420 TIGR02788 VirB11 P-type DNA tr 97.0 0.0014 3E-08 62.9 6.0 73 18-94 141-228 (308)
421 COG1373 Predicted ATPase (AAA+ 97.0 0.0071 1.5E-07 60.2 11.2 76 14-96 31-106 (398)
422 PRK00771 signal recognition pa 97.0 0.0045 9.8E-08 62.3 9.8 38 19-56 93-133 (437)
423 TIGR01425 SRP54_euk signal rec 97.0 0.0057 1.2E-07 61.3 10.4 37 20-56 99-138 (429)
424 PRK05439 pantothenate kinase; 96.9 0.0011 2.5E-08 63.6 5.2 39 8-46 73-111 (311)
425 TIGR00064 ftsY signal recognit 96.9 0.0041 9E-08 58.7 8.8 37 19-55 70-109 (272)
426 PRK10867 signal recognition pa 96.9 0.0033 7.3E-08 63.1 8.5 38 19-56 98-139 (433)
427 KOG2680 DNA helicase TIP49, TB 96.9 0.0009 1.9E-08 63.6 4.1 56 20-76 65-122 (454)
428 PF00437 T2SE: Type II/IV secr 96.9 0.0015 3.2E-08 61.2 5.6 72 19-94 125-207 (270)
429 COG5271 MDN1 AAA ATPase contai 96.9 0.015 3.3E-07 65.9 13.8 173 8-205 873-1066(4600)
430 PRK08099 bifunctional DNA-bind 96.9 0.0017 3.8E-08 64.6 6.3 32 20-51 218-249 (399)
431 PF10443 RNA12: RNA12 protein; 96.9 0.053 1.1E-06 54.1 16.6 64 143-208 186-278 (431)
432 COG2274 SunT ABC-type bacterio 96.9 0.0023 5E-08 68.0 7.5 29 17-45 493-523 (709)
433 cd03228 ABCC_MRP_Like The MRP 96.9 0.0033 7.2E-08 54.7 7.3 28 18-45 25-52 (171)
434 cd03239 ABC_SMC_head The struc 96.9 0.0027 5.8E-08 56.1 6.8 25 23-47 24-48 (178)
435 PRK07667 uridine kinase; Provi 96.9 0.0019 4.2E-08 57.6 5.9 37 21-57 17-56 (193)
436 PF02367 UPF0079: Uncharacteri 96.9 0.0011 2.4E-08 55.3 4.0 35 19-53 13-47 (123)
437 PF04665 Pox_A32: Poxvirus A32 96.9 0.022 4.7E-07 52.9 12.9 137 18-183 10-170 (241)
438 PF07931 CPT: Chloramphenicol 96.9 0.0016 3.4E-08 57.5 5.2 38 22-59 2-39 (174)
439 COG5245 DYN1 Dynein, heavy cha 96.9 0.002 4.3E-08 71.8 6.8 174 19-214 1492-1689(3164)
440 KOG2543 Origin recognition com 96.9 0.017 3.6E-07 56.7 12.4 89 9-97 18-128 (438)
441 PRK13833 conjugal transfer pro 96.9 0.0016 3.5E-08 63.0 5.6 70 20-93 143-224 (323)
442 COG3284 AcoR Transcriptional a 96.9 0.0013 2.7E-08 67.8 5.0 162 23-207 338-529 (606)
443 TIGR01613 primase_Cterm phage/ 96.8 0.0052 1.1E-07 58.7 8.9 68 17-95 72-139 (304)
444 PLN03186 DNA repair protein RA 96.8 0.0045 9.8E-08 60.4 8.5 28 17-44 119-146 (342)
445 COG5192 BMS1 GTP-binding prote 96.8 0.0023 5E-08 65.1 6.4 71 17-92 65-143 (1077)
446 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0043 9.4E-08 59.9 8.2 27 17-43 92-118 (316)
447 COG1116 TauB ABC-type nitrate/ 96.8 0.0067 1.4E-07 56.2 9.0 24 22-45 30-53 (248)
448 TIGR00235 udk uridine kinase. 96.8 0.0016 3.4E-08 58.7 4.8 27 21-47 6-32 (207)
449 TIGR01663 PNK-3'Pase polynucle 96.8 0.0026 5.7E-08 65.3 6.9 59 19-88 367-425 (526)
450 PF00485 PRK: Phosphoribulokin 96.8 0.0011 2.3E-08 59.2 3.5 24 23-46 1-24 (194)
451 cd00071 GMPK Guanosine monopho 96.8 0.0058 1.3E-07 51.6 7.9 25 24-48 2-26 (137)
452 cd02022 DPCK Dephospho-coenzym 96.8 0.0012 2.7E-08 58.0 3.9 32 24-58 2-33 (179)
453 TIGR00554 panK_bact pantothena 96.8 0.0019 4.1E-08 61.6 5.4 39 8-46 49-87 (290)
454 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0018 3.9E-08 60.8 5.2 72 23-94 82-159 (264)
455 cd02028 UMPK_like Uridine mono 96.8 0.0014 3E-08 57.9 4.1 35 24-58 2-39 (179)
456 PRK10078 ribose 1,5-bisphospho 96.8 0.0013 2.7E-08 58.3 3.9 28 22-49 3-30 (186)
457 PLN02165 adenylate isopentenyl 96.8 0.0015 3.1E-08 63.4 4.5 34 21-54 43-76 (334)
458 PRK13808 adenylate kinase; Pro 96.8 0.0012 2.5E-08 64.1 3.8 33 24-58 3-35 (333)
459 TIGR03499 FlhF flagellar biosy 96.8 0.0049 1.1E-07 58.5 8.0 37 20-56 193-234 (282)
460 PRK13851 type IV secretion sys 96.8 0.0019 4.1E-08 63.1 5.3 72 18-93 159-245 (344)
461 PRK00300 gmk guanylate kinase; 96.8 0.002 4.3E-08 57.5 5.1 28 19-46 3-30 (205)
462 cd02024 NRK1 Nicotinamide ribo 96.8 0.0012 2.6E-08 58.9 3.6 27 24-50 2-29 (187)
463 PRK00091 miaA tRNA delta(2)-is 96.8 0.0016 3.5E-08 62.5 4.7 35 20-54 3-37 (307)
464 PF05970 PIF1: PIF1-like helic 96.8 0.0026 5.7E-08 62.4 6.2 29 19-47 20-48 (364)
465 COG1066 Sms Predicted ATP-depe 96.8 0.012 2.7E-07 58.2 10.7 148 17-182 89-255 (456)
466 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.004 8.8E-08 52.9 6.6 73 18-96 23-100 (144)
467 KOG0477 DNA replication licens 96.8 0.0012 2.6E-08 67.9 3.7 145 22-185 483-652 (854)
468 TIGR03263 guanyl_kin guanylate 96.7 0.0011 2.3E-08 57.9 3.0 26 22-47 2-27 (180)
469 TIGR02322 phosphon_PhnN phosph 96.7 0.0013 2.9E-08 57.4 3.6 25 23-47 3-27 (179)
470 COG0324 MiaA tRNA delta(2)-iso 96.7 0.0064 1.4E-07 58.3 8.4 39 20-58 2-40 (308)
471 TIGR02655 circ_KaiC circadian 96.7 0.0058 1.3E-07 62.3 8.7 41 16-56 258-301 (484)
472 TIGR00017 cmk cytidylate kinas 96.7 0.0016 3.5E-08 59.4 4.2 30 21-50 2-31 (217)
473 cd03287 ABC_MSH3_euk MutS3 hom 96.7 0.018 3.9E-07 52.8 11.0 25 19-43 29-53 (222)
474 KOG0482 DNA replication licens 96.7 0.00084 1.8E-08 67.6 2.3 138 22-180 376-536 (721)
475 KOG1051 Chaperone HSP104 and r 96.7 0.0073 1.6E-07 65.2 9.5 137 22-184 209-364 (898)
476 COG4088 Predicted nucleotide k 96.7 0.0011 2.4E-08 59.9 2.8 24 23-46 3-26 (261)
477 COG0645 Predicted kinase [Gene 96.7 0.0044 9.4E-08 54.2 6.4 71 22-99 2-87 (170)
478 PRK14730 coaE dephospho-CoA ki 96.7 0.0017 3.7E-08 58.2 4.1 34 22-57 2-35 (195)
479 PRK08356 hypothetical protein; 96.7 0.0018 3.9E-08 57.7 4.3 32 22-56 6-37 (195)
480 PRK13975 thymidylate kinase; P 96.7 0.0021 4.5E-08 56.9 4.6 28 22-49 3-30 (196)
481 cd02023 UMPK Uridine monophosp 96.7 0.0022 4.8E-08 57.1 4.7 34 24-57 2-36 (198)
482 PRK14733 coaE dephospho-CoA ki 96.7 0.0021 4.6E-08 58.2 4.6 33 19-51 4-36 (204)
483 PRK13894 conjugal transfer ATP 96.7 0.0024 5.1E-08 61.7 5.2 71 19-93 146-228 (319)
484 COG0467 RAD55 RecA-superfamily 96.7 0.0044 9.6E-08 57.7 6.8 40 16-55 18-60 (260)
485 PRK14737 gmk guanylate kinase; 96.7 0.0017 3.7E-08 57.8 3.8 27 20-46 3-29 (186)
486 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0042 9E-08 55.0 6.2 75 18-95 22-100 (177)
487 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0048 1E-07 60.1 7.0 54 1-55 66-123 (358)
488 PRK10416 signal recognition pa 96.7 0.0079 1.7E-07 58.1 8.6 36 19-54 112-150 (318)
489 PRK00023 cmk cytidylate kinase 96.6 0.0018 4E-08 59.3 4.0 31 21-51 4-34 (225)
490 PF08423 Rad51: Rad51; InterP 96.6 0.007 1.5E-07 56.6 7.8 83 16-98 33-147 (256)
491 PLN02199 shikimate kinase 96.6 0.0022 4.8E-08 61.1 4.5 33 21-53 102-134 (303)
492 cd01125 repA Hexameric Replica 96.6 0.024 5.1E-07 52.1 11.2 21 24-44 4-24 (239)
493 cd03230 ABC_DR_subfamily_A Thi 96.6 0.01 2.2E-07 51.8 8.3 26 20-45 25-50 (173)
494 PF08303 tRNA_lig_kinase: tRNA 96.6 0.0052 1.1E-07 53.6 6.2 56 27-91 5-61 (168)
495 PF02456 Adeno_IVa2: Adenoviru 96.6 0.009 2E-07 57.0 8.2 23 19-41 85-107 (369)
496 COG0194 Gmk Guanylate kinase [ 96.6 0.0061 1.3E-07 54.2 6.7 26 21-46 4-29 (191)
497 PRK05506 bifunctional sulfate 96.6 0.0071 1.5E-07 63.7 8.4 40 20-59 459-501 (632)
498 PRK06761 hypothetical protein; 96.6 0.0026 5.7E-08 60.3 4.6 32 21-52 3-34 (282)
499 COG0606 Predicted ATPase with 96.6 0.0011 2.4E-08 66.5 2.0 22 22-43 199-220 (490)
500 PRK09825 idnK D-gluconate kina 96.6 0.0026 5.6E-08 56.1 4.1 32 22-55 4-35 (176)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.7e-73 Score=541.21 Aligned_cols=284 Identities=83% Similarity=1.307 Sum_probs=274.2
Q ss_pred CchhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 80 (337)
Q Consensus 1 ~~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~ 80 (337)
|||+++||+|||+.++|+++|+|+|||||||||||++|+++|+++|++++.+++++|.++|+|+++++||++|+.|.+++
T Consensus 128 ~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 128 MDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADII 207 (413)
T ss_pred HHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred -HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-ccCCCCCceEEEEeCCCCCCcchhc
Q 019694 81 -KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLI 158 (337)
Q Consensus 81 -~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-~~~~~~~V~vI~TTN~~~~ld~aLl 158 (337)
++++||||||||||+++++++ +++.+++++++.++||+++|+|++++++|.| ......+|+||+|||+|+.|||||+
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCC-CCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 478999999999999999887 6788899999999999999999999999998 5566789999999999999999999
Q ss_pred cCCCceEEEeCCCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhc
Q 019694 159 RDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN 238 (337)
Q Consensus 159 R~gR~d~~i~~P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~ 238 (337)
|+||||+++|+|+.++|.+|++.+++..+++..++.++++.|+||+||||||+|+++|+++|++||.++|.+++++.+++
T Consensus 287 RpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~ 366 (413)
T PLN00020 287 RDGRMEKFYWAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVN 366 (413)
T ss_pred CCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHHHHhchhcc
Q 019694 239 SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 285 (337)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~~~l~~~~~ 285 (337)
+++++|.|++|.++++.|+++|++|++||++|.+++|+++||+++++
T Consensus 367 ~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 367 SKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKRVQLSDEYLKNAAL 413 (413)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999653
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-50 Score=371.25 Aligned_cols=240 Identities=28% Similarity=0.422 Sum_probs=209.3
Q ss_pred CchhHHHHHhhhhcCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694 1 MDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 1 ~~k~~~~i~k~~l~~~-g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
+|++.+|+.+|+|..+ |+++|+|+|||||||||||++|++||..+|++|+.++.+.+.++|+||++++||++|..|
T Consensus 145 re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA--- 221 (388)
T KOG0651|consen 145 REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA--- 221 (388)
T ss_pred HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH---
Confidence 5899999999999976 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
+...|||||+||||++.+++. ++.++++++++.|||++++ +|+|+ ...++|++|+|||+|+.|||||+|
T Consensus 222 -~~~~pciifmdeiDAigGRr~--se~Ts~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlR 290 (388)
T KOG0651|consen 222 -REVIPCIIFMDEIDAIGGRRF--SEGTSSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLR 290 (388)
T ss_pred -hhhCceEEeehhhhhhccEEe--ccccchhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcC
Confidence 999999999999999999984 8899999999999999999 66666 888999999999999999999999
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhh
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 237 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~ 237 (337)
|||+|+++|+ |+...|..|++ |.++.|+|+|+++ ++++.+|.+..+...+- .
T Consensus 291 pGRldrk~~iPlpne~~r~~I~K-------------------ih~~~i~~~Geid----~eaivK~~d~f~gad~r---n 344 (388)
T KOG0651|consen 291 PGRLDRKVEIPLPNEQARLGILK-------------------IHVQPIDFHGEID----DEAILKLVDGFNGADLR---N 344 (388)
T ss_pred CccccceeccCCcchhhceeeEe-------------------ecccccccccccc----HHHHHHHHhccChHHHh---h
Confidence 9999999999 88888888664 4445555555555 44555555554433311 1
Q ss_pred cCcCCCCCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHHHHhc
Q 019694 238 NSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 281 (337)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~~~l~ 281 (337)
... ..|.|..+..+-+.++|++..+++||.++++.+++.+|++
T Consensus 345 ~~t-Eag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 345 VCT-EAGMFAIPEERDEVLHEDFMKLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred hcc-cccccccchhhHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 111 2357899999999999999999999999999999999984
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-48 Score=363.93 Aligned_cols=178 Identities=24% Similarity=0.338 Sum_probs=167.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|++||||||||||||||||+||||||++.++.|+.+.+|+|..+|+|++++++|++|..| +..+||||||||||
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEID 254 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEID 254 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechh
Confidence 56999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
+++++|. ...+...+.++.|+|+|+. +|+|+ .+..+|-||++||+++.||||||||||||+.|++ |+.
T Consensus 255 AIg~kR~--d~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 255 AIGAKRF--DSGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred hhhcccc--cCCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 9998886 3345578899999999999 99999 8899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhH
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~ 206 (337)
+.|.+|++.|.++. +++.+.++++++||+||+|.
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk 362 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK 362 (406)
T ss_pred HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH
Confidence 99999999999876 55669999999999999986
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=351.24 Aligned_cols=238 Identities=24% Similarity=0.341 Sum_probs=190.4
Q ss_pred hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
++..|+..|.|||||||||||||.||||+|++.|++|+.|.+.+|.++|+||+++.||++|.+| +.++||||||||
T Consensus 537 ~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRA----R~saPCVIFFDE 612 (802)
T KOG0733|consen 537 FKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRA----RASAPCVIFFDE 612 (802)
T ss_pred HHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHh----hcCCCeEEEecc
Confidence 3467999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
||+++++|+ .....+..+.++++|. .|+|. ..+.+|.||++||+|+.||||+|||||||+..++ |
T Consensus 613 iDaL~p~R~-~~~s~~s~RvvNqLLt---------ElDGl---~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 613 IDALVPRRS-DEGSSVSSRVVNQLLT---------ELDGL---EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhhcCcccC-CCCchhHHHHHHHHHH---------Hhccc---ccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 999999997 3446677778877763 44466 8889999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccC------CCCCHHHHHHHhc--CCCchhhHhHHHHHhhhhHHHHHHHHHhhcCc--cchhhhhcCc
Q 019694 171 TREDRIGVCKGIFRN------DNVADDDIVKLVD--TFPGQSIDFFGALRARVYDDEVRKWISGVGVG--SIGKSLVNSK 240 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~------~~l~~~~la~l~~--gf~gadl~~~~alra~~~~~~i~~~i~~~~~~--~~~~~~~~~~ 240 (337)
+.++|.+|++.+++. ..++.+.|++.+. ||+|+||.. |.....-.++++-+.++... .+..+
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa---LvreAsi~AL~~~~~~~~~~~~~~~~~----- 751 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA---LVREASILALRESLFEIDSSEDDVTVR----- 751 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH---HHHHHHHHHHHHHHhhccccCccccee-----
Confidence 999999999999983 3566799999887 999999962 22222222344444433221 11110
Q ss_pred CCCCCCCCCcccHHHHHHHHHHH---HHHHhhhhhhhhHHHHh
Q 019694 241 EAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKYL 280 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~g~~l---~~eq~~~~~~~l~~~~l 280 (337)
..+..++..++-++...+ +.+++...+.+|.+.|=
T Consensus 752 -----~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 752 -----SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred -----eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 012245556777776655 67888877878776654
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-44 Score=348.67 Aligned_cols=252 Identities=21% Similarity=0.271 Sum_probs=197.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
.+|-+.||||||+||||||||+||||+|.+.+++|+..+++++...|+|...+.||++|..| ++.+||||||||||
T Consensus 331 rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiD 406 (752)
T KOG0734|consen 331 RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEID 406 (752)
T ss_pred hccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechh
Confidence 45889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++.++|....+. ..+|.++|+| +.|+|+ ..+.+|+||++||.|+.||+||+||||||+.+.+ |+.
T Consensus 407 avG~kR~~~~~~-y~kqTlNQLL---------vEmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 407 AVGGKRNPSDQH-YAKQTLNQLL---------VEMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred hhcccCCccHHH-HHHHHHHHHH---------HHhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence 999888744433 5666777666 467788 7778999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccC----CCCCHHHHHHHhcCCCchhhHhHH---HHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCC
Q 019694 173 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFG---ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT 245 (337)
Q Consensus 173 ~~R~~Il~~~~~~----~~l~~~~la~l~~gf~gadl~~~~---alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 245 (337)
..|.+|++.|+.+ .++|+.-||+-+.||+|+||++.. |++|++-.+. -+.-...|..-.+++-..+....
T Consensus 474 ~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~---~VtM~~LE~akDrIlMG~ERks~ 550 (752)
T KOG0734|consen 474 RGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE---MVTMKHLEFAKDRILMGPERKSM 550 (752)
T ss_pred ccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc---cccHHHHhhhhhheeeccccccc
Confidence 9999999988865 477889999999999999998652 2222211110 00001112222233322222333
Q ss_pred C-CCCcccHHHHHHHHHHHHHH-HhhhhhhhhHHHHhchhccC
Q 019694 246 F-EQPRMTMEKLLEYGNMIVQE-QENVKRVQLADKYLSEAALG 286 (337)
Q Consensus 246 ~-~~~~~~~~~l~~~g~~l~~e-q~~~~~~~l~~~~l~~~~~~ 286 (337)
+ .....++.++||.||+++.- -+.....-.+....+|++||
T Consensus 551 ~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG 593 (752)
T KOG0734|consen 551 VIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLG 593 (752)
T ss_pred ccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCcccc
Confidence 4 34467789999999998654 33334555567777887776
No 6
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-44 Score=347.66 Aligned_cols=305 Identities=18% Similarity=0.296 Sum_probs=246.4
Q ss_pred CchhHHHHHhhhhc----------CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-CcEEecCCccccCCCCChHHHH
Q 019694 1 MDKLVVHITKNFMS----------LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLI 69 (337)
Q Consensus 1 ~~k~~~~i~k~~l~----------~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~vs~s~l~~~~~Ge~~~~i 69 (337)
+|+=..+|.+..+. ..|++..||||||||||||||.+||.|.+.++. +.-.+++.++.++|+|+++.+|
T Consensus 226 Ld~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~Nv 305 (744)
T KOG0741|consen 226 LDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENV 305 (744)
T ss_pred chHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHH
Confidence 46667777777665 359999999999999999999999999999986 6889999999999999999999
Q ss_pred HHHHHHHHHHHH----hcCceEEEecccccccccCCCCc-ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEE
Q 019694 70 RQRYREAADIIK----KGKMCCLMINDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 144 (337)
Q Consensus 70 r~~f~~A~~~~~----~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI 144 (337)
|.+|..|.+.-+ ...-.||+|||||++|.+|+... ...+..+.++|+|. .|+|. +...+|+||
T Consensus 306 R~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVI 373 (744)
T KOG0741|consen 306 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVI 373 (744)
T ss_pred HHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEE
Confidence 999999976666 44568999999999998776322 24566677776662 44465 778999999
Q ss_pred EEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccC--------CCCCHHHHHHHhcCCCchhhHhHHHHHhh
Q 019694 145 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN--------DNVADDDIVKLVDTFPGQSIDFFGALRAR 214 (337)
Q Consensus 145 ~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~--------~~l~~~~la~l~~gf~gadl~~~~alra~ 214 (337)
+.|||.+.||.||||||||+..+++ |+++.|++|++.|++. .+++.++|+.+|..|+|++|+ |.+|++
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle--glVksA 451 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE--GLVKSA 451 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH--HHHHHH
Confidence 9999999999999999999999999 9999999999888863 478889999999999999998 667766
Q ss_pred hhHHHHHHHHHhh-----cCccchhhhhcC-------cCCCCCCCCCccc---------------HHHHHHHHHHHHHHH
Q 019694 215 VYDDEVRKWISGV-----GVGSIGKSLVNS-------KEAAPTFEQPRMT---------------MEKLLEYGNMIVQEQ 267 (337)
Q Consensus 215 ~~~~~i~~~i~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~---------------~~~l~~~g~~l~~eq 267 (337)
..-+ +.+.++.- ..+++...-+++ .+..|.|...+.. ...+++.|..++++-
T Consensus 452 ~S~A-~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qv 530 (744)
T KOG0741|consen 452 QSFA-MNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQV 530 (744)
T ss_pred HHHH-HHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHh
Confidence 5543 33333332 122222222222 2346777665443 566778899999999
Q ss_pred hhhhhhhhHHHHhchhccCCchhHHhhhcchhhhhhhhcCCCCCcCCCCccccCCCCCcc
Q 019694 268 ENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTAR 327 (337)
Q Consensus 268 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (337)
++..+..|+..++.|++.. |++||+ +++|..|+|||+|+|+|.+-.-|..+|+
T Consensus 531 k~s~~s~lvSvLl~Gp~~s--GKTaLA-----A~iA~~S~FPFvKiiSpe~miG~sEsaK 583 (744)
T KOG0741|consen 531 KNSERSPLVSVLLEGPPGS--GKTALA-----AKIALSSDFPFVKIISPEDMIGLSESAK 583 (744)
T ss_pred hccccCcceEEEEecCCCC--ChHHHH-----HHHHhhcCCCeEEEeChHHccCccHHHH
Confidence 9999999999999999877 999999 9999999999999999998877766654
No 7
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-42 Score=342.26 Aligned_cols=175 Identities=25% Similarity=0.428 Sum_probs=158.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+.+|||||||||||||||++||++|++++++|+.+++.+|.++|+|++++.|+++|++| +..+||||||||||
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA----R~~aP~IiFfDEiD 537 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA----RQVAPCIIFFDEID 537 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH----hhcCCeEEehhhHH
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++++.|+|+.. .+..+.+++.| +.+| |+ +...+|+||++||+|+.||+||+||||||+.+++ |+.
T Consensus 538 si~~~R~g~~~-~v~~RVlsqLL-tEmD--------G~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 538 ALAGSRGGSSS-GVTDRVLSQLL-TEMD--------GL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hHhhccCCCcc-chHHHHHHHHH-HHcc--------cc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 99998874333 66666666544 3444 77 7778999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhH
Q 019694 173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~ 206 (337)
+.|.+|++.++++.+ ++.+.|++.|+||||++|.
T Consensus 605 ~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~ 642 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV 642 (693)
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH
Confidence 999999999998764 4558999999999999985
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-41 Score=333.55 Aligned_cols=197 Identities=23% Similarity=0.334 Sum_probs=166.8
Q ss_pred hhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694 12 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 91 (337)
Q Consensus 12 ~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID 91 (337)
.+...|+.||+|||||||||||||+||+|+|.+++++|+.+++.++.+++.|++++.||++|++| +..+|||||||
T Consensus 214 ~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A----~~~aPcivFiD 289 (802)
T KOG0733|consen 214 VFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA----KSNAPCIVFID 289 (802)
T ss_pred hHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH----hccCCeEEEee
Confidence 34467999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-CCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694 92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 169 (337)
Q Consensus 92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~- 169 (337)
|||++.++|. ..+.....++|. .|++.+| +..... ....|+||+|||+|+.|||||+|+||||+.|.+
T Consensus 290 eIDAI~pkRe-~aqreMErRiVa-QLlt~mD--------~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~ 359 (802)
T KOG0733|consen 290 EIDAITPKRE-EAQREMERRIVA-QLLTSMD--------ELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLG 359 (802)
T ss_pred cccccccchh-hHHHHHHHHHHH-HHHHhhh--------cccccccCCCCeEEEecCCCCcccCHHHhccccccceeeec
Confidence 9999999987 355555555554 5556666 332222 246799999999999999999999999999998
Q ss_pred -CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH
Q 019694 170 -PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 225 (337)
Q Consensus 170 -P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~ 225 (337)
|+..+|.+|++.+.++. +++...||++|.||+|+||. ||......-+|++.+.
T Consensus 360 vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 360 VPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILD 417 (802)
T ss_pred CCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhh
Confidence 99999999999988754 56679999999999999996 4444333344665554
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-40 Score=334.21 Aligned_cols=240 Identities=21% Similarity=0.332 Sum_probs=196.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.++..|||||||||||||.+|||||.++.++|++|.+.+|.++|+|+++.++|++|++| +..+||||||||+|
T Consensus 699 ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerA----R~A~PCVIFFDELD 774 (953)
T KOG0736|consen 699 SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERA----RSAAPCVIFFDELD 774 (953)
T ss_pred hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHh----hccCCeEEEecccc
Confidence 45889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCC-CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-C--
Q 019694 95 AGAGRMGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-P-- 170 (337)
Q Consensus 95 ~l~~~~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P-- 170 (337)
++++.||. +..+.+..+.|.|.|.+ +||+.+. ....|+||++||||+.|||||+||||||+.+|+ |
T Consensus 775 SlAP~RG~sGDSGGVMDRVVSQLLAE---------LDgls~~-~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 775 SLAPNRGRSGDSGGVMDRVVSQLLAE---------LDGLSDS-SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred ccCccCCCCCCccccHHHHHHHHHHH---------hhcccCC-CCCceEEEecCCCccccChhhcCCCccceeEEecCCc
Confidence 99988863 45577888888877743 3466332 678899999999999999999999999999999 4
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHh-cCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCC
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLV-DTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT 245 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~-~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 245 (337)
+.+.+..|+++.+++. +++..+|++.+ ..|+|||+ .++++.++-.++++-++.+....+.. . .-.
T Consensus 845 d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~l~AikR~i~~ie~g~~~~-----~--e~~ 914 (953)
T KOG0736|consen 845 DAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAMLAAIKRTIHDIESGTISE-----E--EQE 914 (953)
T ss_pred cHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHHHHHHHHHHHHhhhccccc-----c--ccC
Confidence 5566889999888765 55557888776 58999997 58888888888888888876554443 0 011
Q ss_pred CCCCcccHHHHHHHHHHH---HHHHhhhhhhhhHHH
Q 019694 246 FEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADK 278 (337)
Q Consensus 246 ~~~~~~~~~~l~~~g~~l---~~eq~~~~~~~l~~~ 278 (337)
-....++.++++++...+ +.|||...+..+..+
T Consensus 915 ~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~ 950 (953)
T KOG0736|consen 915 SSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQ 950 (953)
T ss_pred CceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Confidence 123467789999998876 566666655554443
No 10
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-39 Score=322.71 Aligned_cols=258 Identities=21% Similarity=0.239 Sum_probs=204.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.+.|+|+||+||||||||+||+++|.+.++||+.+|+|++...++|-+.+.+|++|.+| ++.+||||||||||
T Consensus 177 ~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA----kk~aP~IIFIDEiD 252 (596)
T COG0465 177 ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEID 252 (596)
T ss_pred hcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh----hccCCCeEEEehhh
Confidence 34779999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++...|+-+ ....+....|+|-+++ ++|+|+ ..+..|+||++||+++-+|+||+||||||+.+.+ |+.
T Consensus 253 AvGr~Rg~g--~GggnderEQTLNQlL-----vEmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 253 AVGRQRGAG--LGGGNDEREQTLNQLL-----VEMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred hcccccCCC--CCCCchHHHHHHHHHH-----hhhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcch
Confidence 998777511 1222334444443333 478888 5678999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCC-CCC
Q 019694 173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFE 247 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 247 (337)
..|.+|++.|.+... ++...+++.+.||+|+|+.......+......-+.|+...+++....+++....+.+ .+.
T Consensus 323 ~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vis 402 (596)
T COG0465 323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVIS 402 (596)
T ss_pred hhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccC
Confidence 999999999987664 456889999999999999865332222222222345555566655566665555444 477
Q ss_pred CCcccHHHHHHHHHHHHHHHhhh-hhhhhHHHHhchhccC
Q 019694 248 QPRMTMEKLLEYGNMIVQEQENV-KRVQLADKYLSEAALG 286 (337)
Q Consensus 248 ~~~~~~~~l~~~g~~l~~eq~~~-~~~~l~~~~l~~~~~~ 286 (337)
..+....++||+||+++..--.- ..+..+....+|.+||
T Consensus 403 e~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG 442 (596)
T COG0465 403 EAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALG 442 (596)
T ss_pred hhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhc
Confidence 78889999999999998764333 3456667777776665
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-39 Score=328.14 Aligned_cols=251 Identities=20% Similarity=0.263 Sum_probs=188.8
Q ss_pred HHHHhhhhc--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhc
Q 019694 6 VHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 6 ~~i~k~~l~--~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~ 83 (337)
++.+||..+ ..|+++|+|+||+||||||||+||||+|.+.|+||+.++++++...++|....++|++|..| +..
T Consensus 327 V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~a----r~~ 402 (774)
T KOG0731|consen 327 VKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLA----RKN 402 (774)
T ss_pred HHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHh----hcc
Confidence 344455433 67999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CceEEEecccccccccCCCC---cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694 84 KMCCLMINDLDAGAGRMGGT---TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 160 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~ 160 (337)
+||||||||||+++..++|. ...+...+.++|.| ++|||+ .....|+|+++||+++.||+||+||
T Consensus 403 aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll---------~emDgf---~~~~~vi~~a~tnr~d~ld~allrp 470 (774)
T KOG0731|consen 403 APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL---------VEMDGF---ETSKGVIVLAATNRPDILDPALLRP 470 (774)
T ss_pred CCeEEEecccccccccccccccCCCChHHHHHHHHHH---------HHhcCC---cCCCcEEEEeccCCccccCHHhcCC
Confidence 99999999999999887421 12222333444444 477788 6668899999999999999999999
Q ss_pred CCceEEEeC--CCHHHHHHHHHHhccCCCCC-----HHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhh---cCc
Q 019694 161 GRMEKFYWA--PTREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV---GVG 230 (337)
Q Consensus 161 gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~-----~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~---~~~ 230 (337)
||||+.+.+ |+..+|.+|++.|.++.+++ ...|+.+|.||+|+||.+.-.-.+. .+.|+-.+.+ .++
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~---~a~r~~~~~i~~~~~~ 547 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL---LAARKGLREIGTKDLE 547 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH---HHHHhccCccchhhHH
Confidence 999999999 99999999999999877663 3569999999999999864221111 1122222222 223
Q ss_pred cchhhhhcCcCCCCCC-CCCcccHHHHHHHHHHHHH----HHhhhhhhhh
Q 019694 231 SIGKSLVNSKEAAPTF-EQPRMTMEKLLEYGNMIVQ----EQENVKRVQL 275 (337)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~l~~----eq~~~~~~~l 275 (337)
...++++......+.. ...+...-+.||+||++++ .++++.++.+
T Consensus 548 ~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsI 597 (774)
T KOG0731|consen 548 YAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSI 597 (774)
T ss_pred HHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEe
Confidence 3333333333333322 3335567799999999877 3444444444
No 12
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-37 Score=306.65 Aligned_cols=200 Identities=20% Similarity=0.312 Sum_probs=175.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
...++.+.|||||||||||||.||.++|..+++.|+.+.+.+|.++|+|.++..+|.+|.+| +..+||||||||+|
T Consensus 695 ~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfd 770 (952)
T KOG0735|consen 695 NCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFD 770 (952)
T ss_pred hCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEecccc
Confidence 34788999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
+++++|| .....+..+.++|+|. +|+|. +...+|.|+++|.||+.|||||+||||+|+.++. |+.
T Consensus 771 SiAPkRG-hDsTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 771 SIAPKRG-HDSTGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCcccC-CCCCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 9999997 5666788888888773 44465 6678999999999999999999999999999998 999
Q ss_pred HHHHHHHHHhcc----CCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchh
Q 019694 173 EDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 234 (337)
Q Consensus 173 ~~R~~Il~~~~~----~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~ 234 (337)
.+|.+|++.+.. ...++.+.++..|+||+|+||. ++.-...-.++++|+.+.+.+....
T Consensus 838 ~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~~~~p 900 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEEGVVP 900 (952)
T ss_pred HHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCccccCC
Confidence 999999887764 4477789999999999999996 4444444566889999888665544
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-37 Score=279.65 Aligned_cols=179 Identities=24% Similarity=0.339 Sum_probs=160.3
Q ss_pred cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
+..|+.||+|+|||||||||||+||+|+|++....|+.+.+|++..+|.|+..+.+|++|+.| +.++|+|||||||
T Consensus 182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei 257 (408)
T KOG0727|consen 182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI 257 (408)
T ss_pred HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence 356999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
|+++.+|- ...+...+.++..|+++++ +|+|+ ....+|-||++||+.+.|||||+||||+|+.|++ |+
T Consensus 258 daiatkrf--daqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 258 DAIATKRF--DAQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred hhHhhhhc--cccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence 99997765 2345567788889999998 88898 7778999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhH
Q 019694 172 REDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~ 206 (337)
+.++.-++..+..+.++ +.+++...-+..+|++|.
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~ 366 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN 366 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH
Confidence 88888888777776655 456777777889999885
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=286.05 Aligned_cols=198 Identities=23% Similarity=0.302 Sum_probs=164.1
Q ss_pred CCCCC-cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 17 NIKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 17 g~~~p-~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
|++.| ||||++||||||||+||+|||.+++..||.|+.+.+.++|-|+++++||-+|+.| +..+|++|||||||+
T Consensus 240 GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemA----RfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 240 GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMA----RFYAPSTIFIDEIDS 315 (491)
T ss_pred hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHH----HHhCCceeehhhHHH
Confidence 66555 9999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCC-CCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~-~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++++|++++++ ..++.+.+-|+..+| |.-.... ...|+|+++||.|+.||.||+| ||++.|++ |+.
T Consensus 316 lcs~RG~s~EH-EaSRRvKsELLvQmD--------G~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 316 LCSQRGGSSEH-EASRRVKSELLVQMD--------GVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDA 384 (491)
T ss_pred HHhcCCCccch-hHHHHHHHHHHHHhh--------ccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCH
Confidence 99999855444 445556666655555 6633333 3558999999999999999999 99999999 999
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccc
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI 232 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~ 232 (337)
+.|..+++..++.. .++.++|+..++||+|+||.. ++.......+|+.+..+..+.+
T Consensus 385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~n---vCreAsm~~mRR~i~g~~~~ei 445 (491)
T KOG0738|consen 385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITN---VCREASMMAMRRKIAGLTPREI 445 (491)
T ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHH---HHHHHHHHHHHHHHhcCCcHHh
Confidence 99999999888754 556699999999999999964 3333333456777666554433
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=273.58 Aligned_cols=180 Identities=20% Similarity=0.312 Sum_probs=161.5
Q ss_pred hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
+...|+..|+|+|||||||||||.||+++|.+..+.|+.+|+++|..+|+|+..+.+|++|-.| +.++|+|||+||
T Consensus 173 F~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmde 248 (404)
T KOG0728|consen 173 FEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDE 248 (404)
T ss_pred HHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeec
Confidence 3467999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
||++.+.|.+++ ......++.+.+++++ +++|+ +...++-||++||+.+-|||||+||||+|+.|++ |
T Consensus 249 idsigs~r~e~~--~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 249 IDSIGSSRVESG--SGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred ccccccccccCC--CCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 999997765222 1234567777778877 77798 8889999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhH
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~ 206 (337)
+.+.|.+|++.|.++. +++...++....|.+|+++.
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk 358 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK 358 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh
Confidence 9999999999998876 56678999999999998875
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=276.76 Aligned_cols=179 Identities=23% Similarity=0.342 Sum_probs=163.1
Q ss_pred cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
...|++||+|+|+|||||||||++|||+|.+.+..|+.+.+..|...|+|+..+++|+.|.-| +..+|+||||||+
T Consensus 198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA----KEkaP~IIFIDEl 273 (424)
T KOG0652|consen 198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPTIIFIDEL 273 (424)
T ss_pred HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh----hccCCeEEEEech
Confidence 357999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
|++..+|.++ .....+.++.+++++++ +++|+ .+..+|-||++||+.+.|||||+|.||+|+.|++ |+
T Consensus 274 DAIGtKRfDS--ek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 274 DAIGTKRFDS--EKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred hhhccccccc--cccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 9999877632 33456778888888888 78898 7888999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhH
Q 019694 172 REDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~ 206 (337)
.+.|..|++.|.++.++ +.+++++-+++|.|+...
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe
Confidence 99999999999987654 569999999999997754
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=277.35 Aligned_cols=178 Identities=22% Similarity=0.329 Sum_probs=159.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
.+|+.||+|||||||||||||.+|+|+|+..+..|+.+-+|+|..+|+|+..+.+|++|+.| +..+-|||||||||
T Consensus 205 ~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeid 280 (435)
T KOG0729|consen 205 NLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEID 280 (435)
T ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++.+.|-+.. ....-.++.++++++. +++|+ ..++++-|+++||+|+.|||||+||||+|+.+++ |+.
T Consensus 281 aiggarfddg--~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdl 350 (435)
T KOG0729|consen 281 AIGGARFDDG--AGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL 350 (435)
T ss_pred cccCccccCC--CCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcc
Confidence 9987664211 1123356677777777 77798 8899999999999999999999999999999998 999
Q ss_pred HHHHHHHHHhccCCCCC----HHHHHHHhcCCCchhhH
Q 019694 173 EDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID 206 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~l~----~~~la~l~~gf~gadl~ 206 (337)
+.|..|++.|.+...+. .+-+++++..-+|++|.
T Consensus 351 egrt~i~kihaksmsverdir~ellarlcpnstgaeir 388 (435)
T KOG0729|consen 351 EGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR 388 (435)
T ss_pred cccceeEEEeccccccccchhHHHHHhhCCCCcchHHH
Confidence 99999999999877554 48899999999999885
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=280.01 Aligned_cols=179 Identities=21% Similarity=0.322 Sum_probs=162.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+||+|||+||||||.||+|+|++..+.|+.+-+++|..+|.|+..+++|++|+.| ...+|+|+||||||
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEId 288 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEID 288 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++..+|.++ .+...+.++++++++++ +++|+ ..++.|-||++||+.+.|||||+||||+|+.|++ |+.
T Consensus 289 AiGtKRyds--~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 289 AIGTKRYDS--NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred hhccccccC--CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence 999887632 33456788888889988 88899 7789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
..+..|+..|.... .++.+.+...-+.|+|+||..
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkA 397 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKA 397 (440)
T ss_pred hhhceeEEEeecccchhccccHHHHhhcccccccccHHH
Confidence 99999998888765 555678877889999999963
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3e-34 Score=288.34 Aligned_cols=175 Identities=22% Similarity=0.345 Sum_probs=150.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||++|+++|++++.+++.++.+.+.++|+|++++.++++|..| +..+||||||||||
T Consensus 253 ~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID 328 (489)
T CHL00195 253 NYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEID 328 (489)
T ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhh
Confidence 35889999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
+++.++.+.......++.+.. ++..++ ....+|+||+|||+++.||++++|+||||+.+++ |+.
T Consensus 329 ~~~~~~~~~~d~~~~~rvl~~-lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 329 KAFSNSESKGDSGTTNRVLAT-FITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred hhhccccCCCCchHHHHHHHH-HHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 998654322333344455543 334444 2346799999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCC------CCCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~------~l~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.++.+. +.+.+.+++.++||+|+||+.
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence 99999999998764 445689999999999999973
No 20
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.3e-34 Score=312.28 Aligned_cols=176 Identities=9% Similarity=0.037 Sum_probs=139.8
Q ss_pred hhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCC----------CC------------------
Q 019694 12 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG------------------ 63 (337)
Q Consensus 12 ~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~----------~G------------------ 63 (337)
+....|+++|+||||+||||||||+||+|+|.+++++|+.++++++.+++ +|
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 33456899999999999999999999999999999999999999998654 12
Q ss_pred -------------ChH--HHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCcccc
Q 019694 64 -------------EPA--KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ 128 (337)
Q Consensus 64 -------------e~~--~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~ 128 (337)
..+ ..|+.+|+.| ++.+||||||||||+++.+.. . ......|++.+|
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds---~-----~ltL~qLLneLD------ 1762 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES---N-----YLSLGLLVNSLS------ 1762 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc---c-----eehHHHHHHHhc------
Confidence 222 2378889999 999999999999999986521 1 111234445555
Q ss_pred CCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc-------cCCCCCHHHHHHHhcC
Q 019694 129 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF-------RNDNVADDDIVKLVDT 199 (337)
Q Consensus 129 ~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~-------~~~~l~~~~la~l~~g 199 (337)
|........+|+||||||+|+.|||||+||||||+.|++ |+..+|.+++..+. ....++.+.+|+.|.|
T Consensus 1763 --g~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1763 --RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred --cccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 442223457899999999999999999999999999999 89989988876432 2223567899999999
Q ss_pred CCchhhHh
Q 019694 200 FPGQSIDF 207 (337)
Q Consensus 200 f~gadl~~ 207 (337)
|+||||..
T Consensus 1841 fSGADLan 1848 (2281)
T CHL00206 1841 SNARDLVA 1848 (2281)
T ss_pred CCHHHHHH
Confidence 99999974
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=285.43 Aligned_cols=175 Identities=24% Similarity=0.398 Sum_probs=152.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++|+.+|..| ++.+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A----~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA----RKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHH----HcCCCcEEEEEchhhh
Confidence 789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 174 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~ 174 (337)
+..++++. .....+.++ .|+..+| |. +...+|+||+|||+++.+|+|++||||||+.+++ |+.++
T Consensus 348 ~~~r~~~~-~~~~~r~~~-~lL~~~d--------~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGPSE-DGSGRRVVG-QLLTELD--------GI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCCCC-chHHHHHHH-HHHHHhc--------CC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 98876322 222234444 4444444 44 6677899999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCC------CCCHHHHHHHhcCCCchhhHhH
Q 019694 175 RIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 175 R~~Il~~~~~~~------~l~~~~la~l~~gf~gadl~~~ 208 (337)
|.+|++.++... .++...+++++++|+|+||...
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 999999999843 4566899999999999999743
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.6e-33 Score=292.64 Aligned_cols=177 Identities=26% Similarity=0.396 Sum_probs=154.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..| +...||||||||||
T Consensus 481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid 556 (733)
T TIGR01243 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEID 556 (733)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChh
Confidence 45889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
++++.+++........+.++++| ..+| |. ....+|+||+|||+++.||+|++||||||+.+++ |+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL-~~ld--------g~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLL-TEMD--------GI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHH-HHhh--------cc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 99987763333334445555444 4444 44 4567899999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.+.+..+ ++.+.+++.++||+|+||..
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 663 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA 663 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 999999998887654 45689999999999999963
No 23
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=265.41 Aligned_cols=173 Identities=21% Similarity=0.295 Sum_probs=149.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
+.+|=+|||||||||||||.||+|+|.+.+-.|+++|.|+|.++|.|+++++++++|+.| +.++|+||||||||++
T Consensus 162 kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 162 KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDSL 237 (439)
T ss_pred CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhhh
Confidence 555669999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 174 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~ 174 (337)
+++++++ +.....++-..+| |||.|. .....+|+|+++||-|+.||.|++| ||++.||+ |....
T Consensus 238 cg~r~en-EseasRRIKTEfL---------VQMqGV--G~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 238 CGSRSEN-ESEASRRIKTEFL---------VQMQGV--GNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 303 (439)
T ss_pred ccCCCCC-chHHHHHHHHHHH---------Hhhhcc--ccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHH
Confidence 9988733 2233334444444 466665 2456789999999999999999999 99999999 99999
Q ss_pred HHHHHHHhccCCCC-----CHHHHHHHhcCCCchhhHh
Q 019694 175 RIGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 175 R~~Il~~~~~~~~l-----~~~~la~l~~gf~gadl~~ 207 (337)
|..+++.++.+... +...+++.|+||+|+||..
T Consensus 304 R~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisi 341 (439)
T KOG0739|consen 304 RARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISI 341 (439)
T ss_pred hhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEE
Confidence 99999999987633 3478999999999999964
No 24
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-33 Score=262.77 Aligned_cols=227 Identities=21% Similarity=0.337 Sum_probs=173.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
-.++|+|||||||||||||++|+++|++.|..|+.++.+.+.++|.|+.+++++.+|..| .+-+||||||||+|++
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslA----sKl~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLA----SKLQPSIIFIDEVDSF 198 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhh----hhcCcceeehhhHHHH
Confidence 357999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 174 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~ 174 (337)
++.|+ ++++... .+...-+|.+.| |.. .....+|+|+++||+|.+||.|++| ||-+.+++ |+.++
T Consensus 199 L~~R~-s~dHEa~-a~mK~eFM~~WD--------Gl~-s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 199 LGQRR-STDHEAT-AMMKNEFMALWD--------GLS-SKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQ 265 (386)
T ss_pred Hhhcc-cchHHHH-HHHHHHHHHHhc--------ccc-CCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhh
Confidence 98774 4554444 444445555666 552 2334569999999999999999999 99999998 99999
Q ss_pred HHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhh-cCccchhhhhcCcCCCC---CC
Q 019694 175 RIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVGSIGKSLVNSKEAAP---TF 246 (337)
Q Consensus 175 R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~-~~~~~~~~~~~~~~~~~---~~ 246 (337)
|.+|++.+++..++ +...++++|+||+|+||... .|.+.+ ..+|.++..- +.....+.+......++ ..
T Consensus 266 R~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkel--C~~Aa~-~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~ 342 (386)
T KOG0737|consen 266 RRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKEL--CRLAAL-RPIRELLVSETGLLDLDKAIADLKPTQAAASSC 342 (386)
T ss_pred HHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHH--HHHHhH-hHHHHHHHhcccchhhhhhhhhccCCccccccc
Confidence 99999999987655 56999999999999999743 222222 2356666552 21111111111111111 12
Q ss_pred CCCcccHHHHHHHHHHH
Q 019694 247 EQPRMTMEKLLEYGNMI 263 (337)
Q Consensus 247 ~~~~~~~~~l~~~g~~l 263 (337)
.-..+..++|+.+-+.+
T Consensus 343 ~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 343 LLRPLEQEDFPKAINRV 359 (386)
T ss_pred ccCcccHHHHHHHHHhh
Confidence 23467788888887644
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=270.75 Aligned_cols=181 Identities=21% Similarity=0.310 Sum_probs=151.0
Q ss_pred hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
+...|+.+|+|+|||||||||||++|+++|++++.+++.+.++++.++|+|++++.++++|..| +..+|+||||||
T Consensus 171 ~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A----~~~~P~ILfIDE 246 (398)
T PTZ00454 171 YEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLA----RENAPSIIFIDE 246 (398)
T ss_pred HHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHH----HhcCCeEEEEEC
Confidence 3456899999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
||+++.++.+... .....+...+++++. .+++. ....++.||+|||+++.||++++|+||||+.|++ |
T Consensus 247 ID~i~~~r~~~~~--~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 247 VDSIATKRFDAQT--GADREVQRILLELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred HhhhccccccccC--CccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 9999876542111 111223334444443 23344 3456899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.++...+ ++...+++.++||+|+||..
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 99999999999987654 45689999999999999863
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.9e-32 Score=270.33 Aligned_cols=251 Identities=18% Similarity=0.238 Sum_probs=182.3
Q ss_pred cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------cEEecCCccccCCCCChHHHHHHHHHHHHHHHHhc
Q 019694 14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~----------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~ 83 (337)
...|+++|+|+|||||||||||++|+++|++++.+ |+.++++++.++|+|++++.++.+|..|.+.+..+
T Consensus 209 ~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g 288 (512)
T TIGR03689 209 REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDG 288 (512)
T ss_pred HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcC
Confidence 35689999999999999999999999999998654 66788889999999999999999999997666677
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
.|+||||||+|+++.+++.+.........++ .|++.+| |. ...++|+||+|||+++.||+||+|||||
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~-~LL~~LD--------gl---~~~~~ViVI~ATN~~d~LDpALlRpGRf 356 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVP-QLLSELD--------GV---ESLDNVIVIGASNREDMIDPAILRPGRL 356 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHH-HHHHHhc--------cc---ccCCceEEEeccCChhhCCHhhcCcccc
Confidence 8999999999999977653222233334443 4445555 54 4457899999999999999999999999
Q ss_pred eEEEeC--CCHHHHHHHHHHhccCC-CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHH-----HHHHHHh---------
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSIDFFGALRARVYDDE-----VRKWISG--------- 226 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~~-~l~~~~la~l~~gf~gadl~~~~alra~~~~~~-----i~~~i~~--------- 226 (337)
|+.|++ |+.++|.+|++.++... .+ ..++ ....|++++++..+ ....++.. .+.+++.
T Consensus 357 D~~I~~~~Pd~e~r~~Il~~~l~~~l~l-~~~l-~~~~g~~~a~~~al---~~~av~~~~a~~~~~~~l~~~~~~g~~~~ 431 (512)
T TIGR03689 357 DVKIRIERPDAEAAADIFSKYLTDSLPL-DADL-AEFDGDREATAAAL---IQRAVDHLYATSEENRYVEVTYANGSTEV 431 (512)
T ss_pred ceEEEeCCCCHHHHHHHHHHHhhccCCc-hHHH-HHhcCCCHHHHHHH---HHHHHHHHhhhhcccceeEEEecCCceee
Confidence 999999 99999999999998653 33 3444 44689999888633 22222111 1111111
Q ss_pred -----hcCccchhhhhcCcCC--C---CCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHHHHhc
Q 019694 227 -----VGVGSIGKSLVNSKEA--A---PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 281 (337)
Q Consensus 227 -----~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~~~l~ 281 (337)
.-++.+.+.+|.+... . -.-....+++++|+.+...-..|.+......-.++|.+
T Consensus 432 l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~ 496 (512)
T TIGR03689 432 LYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDWAR 496 (512)
T ss_pred EeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHHhh
Confidence 1122333333333210 0 01123477889999998888888888888888888855
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.98 E-value=1.9e-32 Score=283.05 Aligned_cols=236 Identities=21% Similarity=0.296 Sum_probs=169.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.++|+|+||+||||||||++|+++|.+++.+++.++++++.+.+.|.....++.+|..| +...||||||||||
T Consensus 210 ~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID 285 (638)
T CHL00176 210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEID 285 (638)
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecch
Confidence 34788999999999999999999999999999999999999999999998888999999999 88999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
+++.+++.+... .+....++|..++. .+++. ....+|+||+|||+++.+|++|+||||||+.+.+ |+.
T Consensus 286 ~l~~~r~~~~~~--~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 286 AVGRQRGAGIGG--GNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred hhhhcccCCCCC--CcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 998665421111 11122233333333 23354 4457899999999999999999999999999998 999
Q ss_pred HHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccch---hhhhcCcCCCCC
Q 019694 173 EDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG---KSLVNSKEAAPT 245 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~~~ 245 (337)
++|.+|++.+++...+ +...+++.+.||+|+||.... +.+... +.++--+.+..+.+. .+++......+.
T Consensus 356 ~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lv--neAal~-a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~ 432 (638)
T CHL00176 356 EGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL--NEAAIL-TARRKKATITMKEIDTAIDRVIAGLEGTPL 432 (638)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHH--HHHHHH-HHHhCCCCcCHHHHHHHHHHHHhhhccCcc
Confidence 9999999999876543 347889999999999997431 111100 011100111111111 222211122222
Q ss_pred CCCCcccHHHHHHHHHHHHHHH
Q 019694 246 FEQPRMTMEKLLEYGNMIVQEQ 267 (337)
Q Consensus 246 ~~~~~~~~~~l~~~g~~l~~eq 267 (337)
.........++||+||+++...
T Consensus 433 ~~~~~~~~vA~hEaGhA~v~~~ 454 (638)
T CHL00176 433 EDSKNKRLIAYHEVGHAIVGTL 454 (638)
T ss_pred ccHHHHHHHHHHhhhhHHHHhh
Confidence 2334566789999999998753
No 28
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=4.7e-32 Score=266.83 Aligned_cols=180 Identities=23% Similarity=0.360 Sum_probs=152.5
Q ss_pred cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
...|+.+|+|||||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..| +...|+|||||||
T Consensus 158 ~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~IlfiDEi 233 (389)
T PRK03992 158 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELA----REKAPSIIFIDEI 233 (389)
T ss_pred HhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHH----HhcCCeEEEEech
Confidence 356899999999999999999999999999999999999999999999999999999999999 8889999999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
|+++..+++.. ......+..+++.++. .+++. ....++.||+|||+++.+|++++||||||+.+++ |+
T Consensus 234 D~l~~~r~~~~--~~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 234 DAIAAKRTDSG--TSGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred hhhhcccccCC--CCccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 99987765221 1112233444555544 23343 4456899999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 172 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
.++|.+|++.++... +++...++..++||+|+||..
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~ 343 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKA 343 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 999999999998764 356689999999999999974
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=2.4e-32 Score=248.80 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=155.0
Q ss_pred hhHHHHHhhhhcCC---CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694 3 KLVVHITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 3 k~~~~i~k~~l~~~---g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
|..+.++..||..| |-=.|+.||+|||||||||++|+|+|+++..+++.+++.+|.++++|+..+.|+++|.+|
T Consensus 130 K~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA--- 206 (368)
T COG1223 130 KRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA--- 206 (368)
T ss_pred HHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH---
Confidence 33455666777754 444699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
++.+|||+||||+|+++-.|.-.+-..-.+..++++| .-+| |. ..+.+|+.|++||+++.||+|+..
T Consensus 207 -~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALL-TelD--------gi---~eneGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 207 -RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALL-TELD--------GI---KENEGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred -HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHH-Hhcc--------Cc---ccCCceEEEeecCChhhcCHHHHh
Confidence 9999999999999999844321122223344555444 3333 55 678899999999999999999865
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhccCCCCC----HHHHHHHhcCCCchhhH
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID 206 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~----~~~la~l~~gf~gadl~ 206 (337)
||+..|++ |+.++|.+|++.+.++.++. ...+++.+.||||.||.
T Consensus 274 --RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 274 --RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred --hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 99999988 99999999999999887554 48999999999999985
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=2.9e-32 Score=276.11 Aligned_cols=178 Identities=23% Similarity=0.317 Sum_probs=149.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.++|+|+|||||||||||++|+++|++++.+++.++++++.+.+.|..++.++.+|..| +..+||||||||||
T Consensus 82 ~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~Il~iDEid 157 (495)
T TIGR01241 82 KLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEID 157 (495)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHH----HhcCCCEEEEechh
Confidence 45789999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+++..++.. .......+.++++| ..+| +. ....+|+||+|||+++.||++++||||||+.+++ |
T Consensus 158 ~l~~~r~~~~~~~~~~~~~~~~~lL-~~~d--------~~---~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~P 225 (495)
T TIGR01241 158 AVGRQRGAGLGGGNDEREQTLNQLL-VEMD--------GF---GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLP 225 (495)
T ss_pred hhhhccccCcCCccHHHHHHHHHHH-hhhc--------cc---cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCC
Confidence 998766421 11112233444333 3333 44 4456799999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhH
Q 019694 171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~ 208 (337)
+.++|.+|++.++.... ++...++..+.||+|+||...
T Consensus 226 d~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 226 DIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 99999999999987654 445899999999999999743
No 31
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-31 Score=263.71 Aligned_cols=173 Identities=24% Similarity=0.354 Sum_probs=156.1
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcC-ceEEEeccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDL 93 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~-p~Il~IDEi 93 (337)
..|+++|+|+|+|||||||||+++++||++.++.++.++++++.+++.|++++++|..|++| .+.+ |+|||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence 46999999999999999999999999999999999999999999999999999999999999 8888 999999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
|++++++.+ ... ....+.+.|+.++| |+ ....+++||+|||+++.||+++.| ||||+.+.+ |+
T Consensus 288 d~l~p~r~~-~~~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREG-ADD--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCcccc-cch--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 999988863 222 34555667778888 55 467899999999999999999999 999999999 99
Q ss_pred HHHHHHHHHHhccCCCCC----HHHHHHHhcCCCchhhH
Q 019694 172 REDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID 206 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l~----~~~la~l~~gf~gadl~ 206 (337)
..+|.+|++.+++..+.. ..+++..++||+|+||.
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~ 391 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA 391 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH
Confidence 999999999999877554 48899999999999995
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=4.5e-31 Score=261.99 Aligned_cols=179 Identities=21% Similarity=0.319 Sum_probs=149.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.++|.|+.++.++.+|..| +...|+||||||||
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEID 286 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEID 286 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
+++.++.+... ...+.+..++++++. .++++ ....++.||+|||+++.||++++|+||||+.|++ |+.
T Consensus 287 ~l~~kR~~~~s--gg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 287 AIGTKRYDATS--GGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHhccCCCCCC--cccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 99876642111 111222333334433 22344 3456799999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.++... +++.+.++..++||+|++|..
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHH
Confidence 99999999988655 456689999999999999864
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.1e-30 Score=269.54 Aligned_cols=178 Identities=22% Similarity=0.291 Sum_probs=150.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..+.+.|+||||+||||||||++++++|++++.+|+.++++++.+.+.|.....++..|..| +...||||||||||
T Consensus 179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD 254 (644)
T PRK10733 179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID 254 (644)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHh
Confidence 34678899999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+++.+++... ......+.++++| ..+| ++ ....+|+||+|||+++.||++++||||||+.+++ |
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL-~~md--------g~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQML-VEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHH-Hhhh--------cc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 9987665211 1222234444444 2233 55 4457899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhH
Q 019694 171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~ 208 (337)
+.++|.+|++.+++... ++...+++.+.||+|+||...
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence 99999999999997654 455789999999999999753
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=8.8e-30 Score=248.67 Aligned_cols=179 Identities=25% Similarity=0.348 Sum_probs=148.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+.+|+|+|||||||||||++|+++|++++.+++.+.++++...+.|+....++..|..| +...|+||||||+|
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEiD 225 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEID 225 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhhh
Confidence 56889999999999999999999999999999999999999999999999999999999988 88899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
.++.++.+.. ......++.++++++. .+++. ...+++.||+|||+++.+|++++|+||||+.+++ |+.
T Consensus 226 ~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 226 AIAAKRTDSG--TSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred hhccccccCC--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 9986654211 1112233344444443 22233 3456899999999999999999999999999998 999
Q ss_pred HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.++.... ++...+++.++||+|+||..
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 999999999886543 56789999999999999963
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-29 Score=245.13 Aligned_cols=172 Identities=20% Similarity=0.278 Sum_probs=149.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
..+++|+||.||||+|||+|+++||.|.++.|+.++++.|.++|+|+++++||.+|.-| +..+|+|+||||||+++
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vA----r~~qPsvifidEidsll 258 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVA----RSLQPSVIFIDEIDSLL 258 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHH----HhcCCeEEEechhHHHH
Confidence 35779999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHH
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 175 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R 175 (337)
..|. ........++-..+|+...- . ......+|+||+|||+|+.+|.+++| ||-+++++ |+.+.|
T Consensus 259 s~Rs-~~e~e~srr~ktefLiq~~~---------~-~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr 325 (428)
T KOG0740|consen 259 SKRS-DNEHESSRRLKTEFLLQFDG---------K-NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETR 325 (428)
T ss_pred hhcC-CcccccchhhhhHHHhhhcc---------c-cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHH
Confidence 8876 34445555666666654322 2 12345699999999999999999999 99999999 999999
Q ss_pred HHHHHHhccCCCC-----CHHHHHHHhcCCCchhhH
Q 019694 176 IGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 176 ~~Il~~~~~~~~l-----~~~~la~l~~gf~gadl~ 206 (337)
..++..+++..+. +.+.++++++||+|.||.
T Consensus 326 ~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 326 SLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 9999999877632 238899999999999996
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-28 Score=256.80 Aligned_cols=177 Identities=20% Similarity=0.272 Sum_probs=155.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 89 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ 89 (337)
..++.+|+|||+|||||||||+.|+++|..+ .+.|+.-++.+..++|+|+.++.++.+|++| ++.+|+|||
T Consensus 293 ~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA----~k~qPSIIf 368 (1080)
T KOG0732|consen 293 NFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEA----QKTQPSIIF 368 (1080)
T ss_pred hcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHH----hccCceEEe
Confidence 3489999999999999999999999999987 3678899999999999999999999999999 999999999
Q ss_pred ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC
Q 019694 90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 169 (337)
Q Consensus 90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~ 169 (337)
+||||-++..++ +.+... ...+.++|+.++| |+ ..++.|+||+|||+++.+||||+||||||+.+|+
T Consensus 369 fdeIdGlapvrS-skqEqi-h~SIvSTLLaLmd--------Gl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~f 435 (1080)
T KOG0732|consen 369 FDEIDGLAPVRS-SKQEQI-HASIVSTLLALMD--------GL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYF 435 (1080)
T ss_pred cccccccccccc-chHHHh-hhhHHHHHHHhcc--------CC---CCCCceEEEcccCCccccchhhcCCcccceeEee
Confidence 999999998775 333333 3345578888888 77 7889999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHhccCCC--CCH---HHHHHHhcCCCchhhHhH
Q 019694 170 --PTREDRIGVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 170 --P~~~~R~~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~~ 208 (337)
|+.+.|..|+..+..+.. +.. ..+++.+.||.|+||.+.
T Consensus 436 ~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 436 PLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKAL 481 (1080)
T ss_pred eCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHH
Confidence 999999999999988764 332 789999999999998754
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=5.8e-27 Score=247.53 Aligned_cols=176 Identities=24% Similarity=0.328 Sum_probs=151.0
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+.+|+|+|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|..| ....|+||||||||
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a----~~~~p~il~iDEid 281 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEA----EENAPSIIFIDEID 281 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHH----HhcCCcEEEeehhh
Confidence 56889999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
.++..++ ........ .+...|+++++ +. ....+++||+|||+++.||++++|+|||++.+++ |+.
T Consensus 282 ~l~~~r~-~~~~~~~~-~~~~~Ll~~ld--------~l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 282 AIAPKRE-EVTGEVEK-RVVAQLLTLMD--------GL---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hhccccc-CCcchHHH-HHHHHHHHHhh--------cc---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 9987764 22222223 34455666666 33 3456789999999999999999999999999998 999
Q ss_pred HHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.++....+ +.+.+++.++||+|+++..
T Consensus 349 ~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred HHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 9999999988876544 5688999999999999864
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.91 E-value=3.3e-24 Score=177.58 Aligned_cols=130 Identities=27% Similarity=0.404 Sum_probs=110.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcC-ceEEEecccccccccCCC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGG 102 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~-p~Il~IDEiD~l~~~~~~ 102 (337)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.++..+.++..|..+ +... |+||||||+|.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhcccccc-
Confidence 79999999999999999999999999999999999999999999999999999 7666 99999999999986652
Q ss_pred CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCC
Q 019694 103 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 170 (337)
Q Consensus 103 ~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P 170 (337)
.......+.+.+.|++.+++.. ...++++||+|||+++.++++++| +||++.+++|
T Consensus 76 -~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 -PSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp -TSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred -cccccccccccceeeecccccc----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 2334455566667777777221 224679999999999999999999 9999999875
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-22 Score=196.24 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=131.4
Q ss_pred hhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 019694 10 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 89 (337)
Q Consensus 10 k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ 89 (337)
|.|++..|....+|-|||||||||||++..|+|+.|+..++.++.++... ... ++.+...+ ...+||+
T Consensus 224 k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr~LL~~t------~~kSIiv 291 (457)
T KOG0743|consen 224 KDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LRHLLLAT------PNKSILL 291 (457)
T ss_pred chHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HHHHHHhC------CCCcEEE
Confidence 45666789999999999999999999999999999999999998876543 222 45554443 5678999
Q ss_pred ecccccccccCC--CCc--ccc-hhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694 90 INDLDAGAGRMG--GTT--QYT-VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 164 (337)
Q Consensus 90 IDEiD~l~~~~~--~~~--~~~-~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d 164 (337)
|.|||..+.-++ ... ... ..+....+-|+|.+| |.|......+ +||+|||+.+.|||||+||||||
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--------GlwSscg~ER-IivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--------GLWSSCGDER-IIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhc--------cccccCCCce-EEEEecCChhhcCHhhcCCCcce
Confidence 999998763221 110 011 122344455667777 8876665444 69999999999999999999999
Q ss_pred EEEeC--CCHHHHHHHHHHhccCCC-CC-HHHHHHHhcCCCchhhH
Q 019694 165 KFYWA--PTREDRIGVCKGIFRNDN-VA-DDDIVKLVDTFPGQSID 206 (337)
Q Consensus 165 ~~i~~--P~~~~R~~Il~~~~~~~~-l~-~~~la~l~~gf~gadl~ 206 (337)
.+|++ =+.++-..+++.++.-.. .. .++++++.++-.-.+.+
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~ 408 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQ 408 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHH
Confidence 99999 788888999999997753 22 37888888777444443
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.8e-21 Score=181.12 Aligned_cols=153 Identities=21% Similarity=0.357 Sum_probs=126.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC---------CcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceE
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCC 87 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~---------~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~I 87 (337)
+..-+-||||||||||||+|||++|+++.+ ..+.+++..+.++|.+|++++|..+|+...+++. .+...+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 345688999999999999999999999853 4678999999999999999999999999999998 677889
Q ss_pred EEecccccccccCC---CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694 88 LMINDLDAGAGRMG---GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 164 (337)
Q Consensus 88 l~IDEiD~l~~~~~---~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d 164 (337)
++|||+++++..|. ..++.+-.-+.++..| ..+| .. ...++|++.+|+|-.+.||.||.- |-|
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalL-TQlD--------rl---K~~~NvliL~TSNl~~siD~AfVD--RAD 319 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALL-TQLD--------RL---KRYPNVLILATSNLTDSIDVAFVD--RAD 319 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHH-HHHH--------Hh---ccCCCEEEEeccchHHHHHHHhhh--Hhh
Confidence 99999999984442 1233333445555444 4444 23 667999999999999999999985 899
Q ss_pred EEEeC--CCHHHHHHHHHHhcc
Q 019694 165 KFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 165 ~~i~~--P~~~~R~~Il~~~~~ 184 (337)
...++ |+.+.|.+|++.++.
T Consensus 320 i~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred heeecCCccHHHHHHHHHHHHH
Confidence 99999 999999999887763
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.8e-20 Score=187.52 Aligned_cols=147 Identities=21% Similarity=0.300 Sum_probs=123.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC---------CCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~---------~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
.+++|+||||+|||+|+++||+.++..|+.++.+.+.+. |+|.....|-+...+| +...| +++|||
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka----~~~NP-v~LLDE 425 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA----GVKNP-VFLLDE 425 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh----CCcCC-eEEeec
Confidence 489999999999999999999999999999999877543 8888766666777777 55555 889999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC--CCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 169 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~--~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~- 169 (337)
||++.....|. -.+.|++++|+.+|..+...|-.. +.++|++|+|+|..+.||.||+- ||+. |.+
T Consensus 426 IDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~ls 493 (782)
T COG0466 426 IDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLS 493 (782)
T ss_pred hhhccCCCCCC---------hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceee-eeec
Confidence 99998665432 246788999999999998888765 47899999999999999999985 8987 455
Q ss_pred -CCHHHHHHHHHHhccC
Q 019694 170 -PTREDRIGVCKGIFRN 185 (337)
Q Consensus 170 -P~~~~R~~Il~~~~~~ 185 (337)
.+.++..+|.+.|+-.
T Consensus 494 gYt~~EKl~IAk~~LiP 510 (782)
T COG0466 494 GYTEDEKLEIAKRHLIP 510 (782)
T ss_pred CCChHHHHHHHHHhcch
Confidence 9999999999988843
No 42
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-19 Score=182.93 Aligned_cols=189 Identities=17% Similarity=0.232 Sum_probs=140.0
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------CCCCChHHHHHHHHHHHHHHHHhcCc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKM 85 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p 85 (337)
+.|--.-++++|+||||+|||+++++||+.+|..|+.+|.+.+.+ -|+|.....+-+..+.. +...|
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v----~t~NP 507 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV----KTENP 507 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh----CCCCc
Confidence 345555689999999999999999999999999999999887643 38887655555666665 44444
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC--CCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~--~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
+++|||||++.....| --.+.|++++|+.+|..+-..|... +.++|++|||+|..+.||+||+- ||
T Consensus 508 -liLiDEvDKlG~g~qG---------DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM 575 (906)
T KOG2004|consen 508 -LILIDEVDKLGSGHQG---------DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM 575 (906)
T ss_pred -eEEeehhhhhCCCCCC---------ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh
Confidence 8999999999843322 1246788999999999988877664 57899999999999999999985 88
Q ss_pred eEEEeC--CCHHHHHHHHHHhccC-----CCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhh
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRN-----DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSL 236 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~-----~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~ 236 (337)
+. |.+ ...++...|.+.|+-. .++..+.+ + +-.......|.+|+++.|..++-+.+
T Consensus 576 Ev-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v------------~----is~~al~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 576 EV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV------------K----ISDDALLALIERYCREAGVRNLQKQI 638 (906)
T ss_pred he-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc------------C----ccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 87 556 8899999999999843 24443322 1 00111233466677777777666544
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-19 Score=173.54 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=127.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh-cCceEEEecccccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG 98 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~-~~p~Il~IDEiD~l~~ 98 (337)
+=+.||+|||||||||++|+.+|.+.|+.+-.+.++++.- .-.+....|+++|..| ++ .+.-+|||||.|+++.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWa----kkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWA----KKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHH----hhcccceEEEehhhHHHHH
Confidence 3488999999999999999999999999999999987642 2224456789999999 74 4556899999999987
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 176 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~ 176 (337)
.|...--..-....++.+| +........++++.+||+|..+|.|+-- |+|..+++ |..++|.
T Consensus 458 eRnktymSEaqRsaLNAlL--------------fRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERf 521 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALL--------------FRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERF 521 (630)
T ss_pred HhchhhhcHHHHHHHHHHH--------------HHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHH
Confidence 7652211222233455555 2222455778999999999999999974 99999998 9999999
Q ss_pred HHHHHhccCC-------C-----------------C---C----HHHHHHHhcCCCchhhHh
Q 019694 177 GVCKGIFRND-------N-----------------V---A----DDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 177 ~Il~~~~~~~-------~-----------------l---~----~~~la~l~~gf~gadl~~ 207 (337)
.++..|+.+. + + + +.+.++.|+||+|..|.-
T Consensus 522 kll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 522 KLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred HHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence 9977766311 1 1 1 167899999999999863
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.77 E-value=1.2e-17 Score=177.65 Aligned_cols=164 Identities=20% Similarity=0.295 Sum_probs=119.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc---------cCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~---------~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
..+||+||||||||++|+++|+.++.+++.++.+.+. ..|+|.....+.+.|..+ ....| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence 4799999999999999999999999999998766542 357777766777777776 55455 899999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc--cCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 169 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~--~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~- 169 (337)
||++.....+. ..+.|++++|+.++..+...+. ..+.+++++|+|||..+.|+++|++ ||+ .+.+
T Consensus 423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~ 490 (775)
T TIGR00763 423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELS 490 (775)
T ss_pred hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecC
Confidence 99997543211 2346777887544333322221 1245789999999999999999997 886 4566
Q ss_pred -CCHHHHHHHHHHhcc-----C-------CCCCHHHHHHHhcCCCc
Q 019694 170 -PTREDRIGVCKGIFR-----N-------DNVADDDIVKLVDTFPG 202 (337)
Q Consensus 170 -P~~~~R~~Il~~~~~-----~-------~~l~~~~la~l~~gf~g 202 (337)
|+.+++.+|++.++. . ..++.+.+..++.+|+.
T Consensus 491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 899999999887751 1 13455777777776663
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.75 E-value=1.5e-17 Score=155.51 Aligned_cols=146 Identities=16% Similarity=0.141 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---C----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
+..++|+||||||||++|+++|+.+ + .+++.++++++.+.++|+.+..+++.|+.| .++||||||+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~ 114 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEA 114 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEech
Confidence 3568999999999999999999874 2 367888999999999999988888888887 4689999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCceEEEe
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~d~~i~ 168 (337)
|.+.... . ... ......+|+..++ ....++.+|++++..+ .++|+|.+ ||...+.
T Consensus 115 ~~L~~~~--~--~~~-~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~ 174 (261)
T TIGR02881 115 YSLARGG--E--KDF-GKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISID 174 (261)
T ss_pred hhhccCC--c--cch-HHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEE
Confidence 9986311 1 111 1223345555555 2234556666654322 36788886 8877777
Q ss_pred C--CCHHHHHHHHHHhccCCC--CCHHHH
Q 019694 169 A--PTREDRIGVCKGIFRNDN--VADDDI 193 (337)
Q Consensus 169 ~--P~~~~R~~Il~~~~~~~~--l~~~~l 193 (337)
+ ++.+++.+|++.++...+ ++.+.+
T Consensus 175 f~~~~~~el~~Il~~~~~~~~~~l~~~a~ 203 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVKEREYKLTEEAK 203 (261)
T ss_pred ECCCCHHHHHHHHHHHHHHcCCccCHHHH
Confidence 7 688999999998887554 444433
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=7.6e-17 Score=152.87 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=110.2
Q ss_pred CCCCCC---cEEEEEcCCCchHHHHHHHHHHHh---C----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCc
Q 019694 16 PNIKVP---LILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85 (337)
Q Consensus 16 ~g~~~p---~giLL~GpPGtGKT~lA~aiA~~l---~----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p 85 (337)
.|..+| ..+||+||||||||++|+++|+.+ | .+++.++.+++.+.|+|+.+..++.+|+.| .+
T Consensus 51 ~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~g 123 (287)
T CHL00181 51 LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MG 123 (287)
T ss_pred cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cC
Confidence 455443 458999999999999999998875 2 258899999999999999887777777777 56
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccC
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD 160 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~ 160 (337)
+||||||+|.+...++ .. .....+..+|+.+++ ....++.||++++... .++|+|.|
T Consensus 124 gVLfIDE~~~l~~~~~-~~---~~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s- 185 (287)
T CHL00181 124 GVLFIDEAYYLYKPDN-ER---DYGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS- 185 (287)
T ss_pred CEEEEEccchhccCCC-cc---chHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH-
Confidence 8999999999864332 11 122345556767666 2235677888776422 23588887
Q ss_pred CCceEEEeC--CCHHHHHHHHHHhccCCC--CCHH
Q 019694 161 GRMEKFYWA--PTREDRIGVCKGIFRNDN--VADD 191 (337)
Q Consensus 161 gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~ 191 (337)
||+..+.+ ++.+++.+|+..++...+ ++.+
T Consensus 186 -R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 186 -RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred -hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 89988888 899999999999987543 4443
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.6e-17 Score=164.61 Aligned_cols=179 Identities=18% Similarity=0.204 Sum_probs=144.1
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I 90 (337)
++.+ .+-.|||+||+|||||.|++++++++. +++..++++.+.........+.++..|.+| -+.+|+||++
T Consensus 426 spv~-~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~----~~~~PSiIvL 500 (952)
T KOG0735|consen 426 SPVF-RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA----LWYAPSIIVL 500 (952)
T ss_pred cccc-ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH----HhhCCcEEEE
Confidence 4433 356899999999999999999999874 567788999887665555566777788888 9999999999
Q ss_pred cccccccccC-CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC
Q 019694 91 NDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 169 (337)
Q Consensus 91 DEiD~l~~~~-~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~ 169 (337)
|++|.+++.. ..+++..+..+++..+|.+++. .+ ...+..+.||+|.+....|.+-|..|++|+..+.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~--------~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIK--------IY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHH--------HH--HccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 9999999733 2356677777778777766655 11 13345689999999999999999999999999998
Q ss_pred --CCHHHHHHHHHHhccCCCCCH-----HHHHHHhcCCCchhhHhH
Q 019694 170 --PTREDRIGVCKGIFRNDNVAD-----DDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 170 --P~~~~R~~Il~~~~~~~~l~~-----~~la~l~~gf~gadl~~~ 208 (337)
|+..+|.+|++..+.+...+. +-++..|+||...|+..|
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 999999999999987765332 458899999999999865
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=1.3e-16 Score=151.05 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=109.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC-------CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~-------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
..++||+||||||||++|+++|+.+. .+++.++++++.+.+.|+++..+++.|+.| .+++|||||+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi 130 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEA 130 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEech
Confidence 45899999999999999999988762 268899999999999999888888888877 5689999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC--C---CCcchhccCCCceEEEe
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF--S---TLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~--~---~ld~aLlR~gR~d~~i~ 168 (337)
|.+...+.+ ......+...|+++++ ....++.||++++.. + .++|+|.+ ||+..+.
T Consensus 131 ~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~ 191 (284)
T TIGR02880 131 YYLYRPDNE----RDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVD 191 (284)
T ss_pred hhhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEE
Confidence 988643321 1122344556667766 223567788887642 2 24788988 8988888
Q ss_pred C--CCHHHHHHHHHHhccCC--CCCHHHH
Q 019694 169 A--PTREDRIGVCKGIFRND--NVADDDI 193 (337)
Q Consensus 169 ~--P~~~~R~~Il~~~~~~~--~l~~~~l 193 (337)
+ ++.+++.+|++.++... .++.+.+
T Consensus 192 fp~l~~edl~~I~~~~l~~~~~~l~~~a~ 220 (284)
T TIGR02880 192 FPDYSEAELLVIAGLMLKEQQYRFSAEAE 220 (284)
T ss_pred eCCcCHHHHHHHHHHHHHHhccccCHHHH
Confidence 8 78999999999998765 3444433
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.7e-16 Score=159.48 Aligned_cols=175 Identities=21% Similarity=0.249 Sum_probs=147.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..++.+|++++++||||||||++++++|.. +..++.+++.+..+++.|+++..++..|..| +...|+++++||+|
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~ 86 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEID 86 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhh
Confidence 568899999999999999999999999999 7777889999999999999999999999999 88899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
.+...+.. ....+....+ ..|...++ +.. ... +.+++.||++..+++++.|++||++.+.+ |+.
T Consensus 87 ~~~~~~~~-~~~~~~~~v~-~~l~~~~d--------~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 87 ALAPKRSS-DQGEVERRVV-AQLLALMD--------GLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred hcccCccc-cccchhhHHH-HHHHHhcc--------ccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 99988763 3333444444 44445555 442 344 88999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhH
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~ 208 (337)
..+.+|+..+.... ..+...++..+.||.++++..+
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHH
Confidence 99999987776544 3456899999999999999754
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.7e-16 Score=159.88 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=141.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
+.+.-..+||+|+||||||++++++|.++|++++.+++.++.+...+..+..+...|.+| +...|+|||+-++|.+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl 502 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVL 502 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEecccee
Confidence 345566899999999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCCCHHHHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 176 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P~~~~R~ 176 (337)
.....|+... ...+.+ +.++. . ....-..++++||+||+..+.|++.+.+..+++..+..|+.++|.
T Consensus 503 ~id~dgged~-rl~~~i-~~~ls-~----------e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl 569 (953)
T KOG0736|consen 503 GIDQDGGEDA-RLLKVI-RHLLS-N----------EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL 569 (953)
T ss_pred eecCCCchhH-HHHHHH-HHHHh-c----------ccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence 8544421111 111111 12211 1 111235688999999999999999999888877777779999999
Q ss_pred HHHHHhccCCCCCH----HHHHHHhcCCCchhhHhH
Q 019694 177 GVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 177 ~Il~~~~~~~~l~~----~~la~l~~gf~gadl~~~ 208 (337)
+|++.++....++. ..++..+.||+-++++-+
T Consensus 570 ~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 570 EILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred HHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999998776663 789999999999999743
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=6.3e-16 Score=163.68 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=115.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
+....++|+||||||||++|+++|+.+ +..++.++.+.+. .+|.|+.+..++.+|+++ ++..++
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~ 276 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNA 276 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCe
Confidence 345678999999999999999999987 6778888888886 578999999999999998 767899
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 161 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g 161 (337)
||||||||.+.+..+. ..... .....|...+ ..+.+.+|++||..+ .+|+||.|
T Consensus 277 ILfiDEih~l~~~g~~-~~~~~---~~~~~L~~~l---------------~~g~i~~IgaTt~~e~~~~~~~d~al~r-- 335 (731)
T TIGR02639 277 ILFIDEIHTIVGAGAT-SGGSM---DASNLLKPAL---------------SSGKLRCIGSTTYEEYKNHFEKDRALSR-- 335 (731)
T ss_pred EEEEecHHHHhccCCC-CCccH---HHHHHHHHHH---------------hCCCeEEEEecCHHHHHHHhhhhHHHHH--
Confidence 9999999999854321 11111 1222332222 246789999999733 57999998
Q ss_pred CceEEEeC--CCHHHHHHHHHHhccC----C--CCCH---HHHHHHhcCCCc
Q 019694 162 RMEKFYWA--PTREDRIGVCKGIFRN----D--NVAD---DDIVKLVDTFPG 202 (337)
Q Consensus 162 R~d~~i~~--P~~~~R~~Il~~~~~~----~--~l~~---~~la~l~~gf~g 202 (337)
||.. +.+ |+.+++.+|++.+... . .++. ..++.++..|-+
T Consensus 336 Rf~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 336 RFQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred hCce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 8875 566 9999999998865532 2 3454 445666666543
No 52
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.65 E-value=3.5e-15 Score=158.38 Aligned_cols=163 Identities=20% Similarity=0.296 Sum_probs=119.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------CCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
..++|+||||||||++++.+|+.++.+++.++.+...+ .|.|.....+.+.+..+ ... ..||||||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~-~~villDE 424 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVK-NPLFLLDE 424 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCC-CCEEEEEC
Confidence 46999999999999999999999999999888776432 35665544555555555 333 34899999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc--CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 169 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~--~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~- 169 (337)
||++.....+ .....|++++|+.++..+...|.. .+.++|++|+|||... |++||+. ||+.+.+.
T Consensus 425 idk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~ii~~~~ 492 (784)
T PRK10787 425 IDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RMEVIRLSG 492 (784)
T ss_pred hhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--ceeeeecCC
Confidence 9998654321 124678889998777776655543 3578999999999984 9999985 99764444
Q ss_pred CCHHHHHHHHHHhccC------------CCCCHHHHHHHhcCCC
Q 019694 170 PTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFP 201 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~------------~~l~~~~la~l~~gf~ 201 (337)
++.++..+|++.++.. ..++.+.+..++++|+
T Consensus 493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 8999999998888731 1234466666666665
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.59 E-value=1.4e-14 Score=131.51 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=89.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
...-.+|||||||+|||+||+.||++++.++...+++.+.. . .-+..++.. -....|||||||..+-
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~-~dl~~il~~------l~~~~ILFIDEIHRln- 114 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----A-GDLAAILTN------LKEGDILFIDEIHRLN- 114 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----C-HHHHHHHHT--------TT-EEEECTCCC---
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----H-HHHHHHHHh------cCCCcEEEEechhhcc-
Confidence 34568999999999999999999999999999998864321 2 222222222 2356799999998652
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-----ccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-----NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-----~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
..++..|+..+++-...-+-|.- .....++.-+|++|++...|.+||.- ||-....+ .+
T Consensus 115 ------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 115 ------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp ------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred ------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 23445565555543221111110 01124567899999999999999975 77776655 99
Q ss_pred HHHHHHHHHHhccCCCCCH
Q 019694 172 REDRIGVCKGIFRNDNVAD 190 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l~~ 190 (337)
.++...|++......+++.
T Consensus 181 ~~el~~Iv~r~a~~l~i~i 199 (233)
T PF05496_consen 181 EEELAKIVKRSARILNIEI 199 (233)
T ss_dssp HHHHHHHHHHCCHCTT-EE
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 9999999988777665553
No 54
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=3.1e-14 Score=141.12 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCChH-HHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~~-~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
...+||+||||||||++|+++|+.++.+|+.++++.+. .+|+|... ..+..++..+...+....++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 47899999999999999999999999999999998875 57888753 34455555443334456889999999999986
Q ss_pred cCCC-CcccchhhHhHHHHHHhhhCC
Q 019694 99 RMGG-TTQYTVNNQMVNATLMNIADN 123 (337)
Q Consensus 99 ~~~~-~~~~~~~~~~v~~~Ll~lld~ 123 (337)
+..+ +....+....+++.|+.+++.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 5321 112233444678888899973
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=1.2e-14 Score=153.44 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=102.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 87 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 87 (337)
.+..+||+||||||||++|+++|... +..++.++.+.+. .+|.|+.+..++.+|..+ +...++|
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~I 281 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI 281 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCCE
Confidence 45667999999999999999999874 4455666655555 457888888888888887 6778999
Q ss_pred EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCC
Q 019694 88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGR 162 (337)
Q Consensus 88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR 162 (337)
|||||||.+++..+.. .. ...+.++|..++. .+++.+|++||..+ ..|++|.| |
T Consensus 282 LfIDEIh~L~g~g~~~-~g---~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--R 340 (758)
T PRK11034 282 LFIDEIHTIIGAGAAS-GG---QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_pred EEeccHHHHhccCCCC-Cc---HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--h
Confidence 9999999998654311 11 1112223332322 46789999999865 57999998 8
Q ss_pred ceEEEeC--CCHHHHHHHHHHhcc
Q 019694 163 MEKFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 163 ~d~~i~~--P~~~~R~~Il~~~~~ 184 (337)
|+. +.+ |+.+++.+|++.+..
T Consensus 341 Fq~-I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 341 FQK-IDITEPSIEETVQIINGLKP 363 (758)
T ss_pred CcE-EEeCCCCHHHHHHHHHHHHH
Confidence 874 666 999999999887653
No 56
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=2.9e-14 Score=140.13 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-CCCC-ChHHHHHHHHHHHHHH------------------
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAADI------------------ 79 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-~~~G-e~~~~ir~~f~~A~~~------------------ 79 (337)
.|+.|||+||||||||++|+++|+.++.+|+.++++++.. +|+| +.+..++.+|..|..+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e 128 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE 128 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999998875 7999 5578888888888200
Q ss_pred --------------------------------------------------------------------------------
Q 019694 80 -------------------------------------------------------------------------------- 79 (337)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (337)
T Consensus 129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK05201 129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP 208 (443)
T ss_pred HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence
Q ss_pred -----------------------------------HH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCC
Q 019694 80 -----------------------------------IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 123 (337)
Q Consensus 80 -----------------------------------~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~ 123 (337)
+. .....||||||||+++.+.++ ....+...-|++.|+.+++.
T Consensus 209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG 287 (443)
T PRK05201 209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEG 287 (443)
T ss_pred CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhccccccccc
Confidence 01 124579999999999976542 33456667788888888884
Q ss_pred CccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCHHHHHHHH
Q 019694 124 PTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 179 (337)
Q Consensus 124 ~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il 179 (337)
.+... .+......+|++||+.- .|+.|-|.|+ |||-....+ ++.++...||
T Consensus 288 ~~v~~---k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 288 STVST---KYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred ceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 33221 23346678899998754 4667778887 899999998 8999988886
No 57
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.56 E-value=2.4e-14 Score=140.60 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=119.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCC-ChHHHHHHHHHHHHHHH-----------------
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADII----------------- 80 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~G-e~~~~ir~~f~~A~~~~----------------- 80 (337)
.|++|||+||||||||++|+++|+.++.+|+.++.+.+. .+|+| +.+..++.+|..|...+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 579999999999999999999999999999999999886 48999 57788888888772100
Q ss_pred --------------------------------------------------------------------------------
Q 019694 81 -------------------------------------------------------------------------------- 80 (337)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (337)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred --------------------------------------HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhC
Q 019694 81 --------------------------------------KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 122 (337)
Q Consensus 81 --------------------------------------~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld 122 (337)
+.....||||||||+++.+.+ +....+...-|++.|+.++.
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilE 284 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVE 284 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhcccccccc
Confidence 012457999999999996653 23445666778888888888
Q ss_pred CCccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCHHHHHHHH
Q 019694 123 NPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 179 (337)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il 179 (337)
..+... .+......+|++||+.- .|+.|=|.|. |||-....+ ++.++-..||
T Consensus 285 Gt~v~~---k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 285 GSTVNT---KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred Cceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 433221 23346678899998764 5667777887 899999998 8999988886
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=2.2e-14 Score=153.99 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
+....++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.+..++.+|.+.. +...++
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~ 273 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNV 273 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCe
Confidence 344578899999999999999999987 6788888888775 4588999889999998751 346789
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 161 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g 161 (337)
|||||||+.+.+..+. ..... ....|.. . -.++.+.+|+||+..+ .+|+||.|
T Consensus 274 ILfIDEih~l~~~~~~--~~~~d---~~~~lkp------------~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r-- 331 (857)
T PRK10865 274 ILFIDELHTMVGAGKA--DGAMD---AGNMLKP------------A---LARGELHCVGATTLDEYRQYIEKDAALER-- 331 (857)
T ss_pred EEEEecHHHhccCCCC--ccchh---HHHHhcc------------h---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--
Confidence 9999999999865431 11111 1112211 1 2357889999999877 48999999
Q ss_pred CceEEEeC-CCHHHHHHHHHHhcc
Q 019694 162 RMEKFYWA-PTREDRIGVCKGIFR 184 (337)
Q Consensus 162 R~d~~i~~-P~~~~R~~Il~~~~~ 184 (337)
||+.++.. |+.+++..|++.+..
T Consensus 332 Rf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 332 RFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred hCCEEEeCCCCHHHHHHHHHHHhh
Confidence 88764433 999999999887754
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=4.5e-14 Score=136.15 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=100.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
.++..+|||||||||||++|+++|++++..+..++++.+.. ...+...+.. ...++||||||||.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 45778999999999999999999999999888777654321 1222233322 24678999999998742
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~----~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
.. ...|...+++.. .+.++..... ...+.+.+|++||++..++++|.. ||...+.+ |+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 11 111222222110 0111111000 123457899999999999999875 77776776 99
Q ss_pred HHHHHHHHHHhccCCCC--CHH---HHHHHhcCCC
Q 019694 172 REDRIGVCKGIFRNDNV--ADD---DIVKLVDTFP 201 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l--~~~---~la~l~~gf~ 201 (337)
.+++.+|++......++ +++ .|++.+.|.+
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 99999999888766544 444 4444444444
No 60
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.54 E-value=8.6e-14 Score=137.64 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=86.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
+..+||+||||||||++|+++|+.++++|..++++.+. .+|+|.. +..+...+..+...+....++||||||||++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 36899999999999999999999999999999988875 4688875 344555554432333456789999999999986
Q ss_pred cCCC-CcccchhhHhHHHHHHhhhCCCccccCC-CccccCCCCCceEEEEeCC
Q 019694 99 RMGG-TTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGND 149 (337)
Q Consensus 99 ~~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~-g~~~~~~~~~V~vI~TTN~ 149 (337)
++.+ +....+....+++.|+.+++. ..+.++ ..-...+..+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhc-cceecccCCCccccCCCeEEEEcCCc
Confidence 5431 112233344677888888862 222211 1111223455677888775
No 61
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.53 E-value=9.8e-14 Score=148.72 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=119.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGK 84 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~ 84 (337)
..+.+..++|+||||||||++|+.+|..+ +..++.++.+.+. .+|.|+.+..++.+|+++ +...
T Consensus 196 ~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~ 271 (821)
T CHL00095 196 GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENN 271 (821)
T ss_pred cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcC
Confidence 44567789999999999999999999986 3678899988876 578899999999999998 6678
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 159 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR 159 (337)
++|||||||+.+.+..+. .... .+...|... -.++.+.+|++|+..+ ..|++|.|
T Consensus 272 ~~ILfiDEih~l~~~g~~--~g~~---~~a~lLkp~---------------l~rg~l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 272 NIILVIDEVHTLIGAGAA--EGAI---DAANILKPA---------------LARGELQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred CeEEEEecHHHHhcCCCC--CCcc---cHHHHhHHH---------------HhCCCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence 999999999998865431 1111 122222211 1246789999999764 47899998
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhcc------CCCCCH---HHHHHHhcCCCc------hhhHhHH
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFR------NDNVAD---DDIVKLVDTFPG------QSIDFFG 209 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~------~~~l~~---~~la~l~~gf~g------adl~~~~ 209 (337)
||.. +.+ |+.++...|++.... ...++. ..++.++.+|-+ ..|+++.
T Consensus 332 --Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 332 --RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred --cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 8876 455 999999888765431 223554 456677777654 3566543
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=7.7e-14 Score=149.57 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=114.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC----------CCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKM 85 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~----------~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p 85 (337)
+....++|+||||||||++|+.+|+.+. ..++.++.+.+. .++.|+.+..++.++.++ + ...+
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~ 281 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQP 281 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCC
Confidence 3345789999999999999999999862 456777777765 368899999999999988 5 3578
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccC
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD 160 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~ 160 (337)
+|||||||+.+.+..+...+.. ...+|... -.++.+.+|+||+..+ .+|+||.|
T Consensus 282 ~ILfIDEih~l~~~g~~~~~~d-----~~n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r- 340 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQAGQGD-----AANLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR- 340 (852)
T ss_pred eEEEEeChHHhccCCCcccccc-----HHHHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH-
Confidence 9999999999986543111111 11122211 2356789999999643 48999999
Q ss_pred CCceEEEeC--CCHHHHHHHHHHhccC----CC--CCH---HHHHHHhcCCC------chhhHhH
Q 019694 161 GRMEKFYWA--PTREDRIGVCKGIFRN----DN--VAD---DDIVKLVDTFP------GQSIDFF 208 (337)
Q Consensus 161 gR~d~~i~~--P~~~~R~~Il~~~~~~----~~--l~~---~~la~l~~gf~------gadl~~~ 208 (337)
||. .+.+ |+.+++..|++.+... .+ ++. ..++.++++|. +..||..
T Consensus 341 -Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdll 403 (852)
T TIGR03345 341 -RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLL 403 (852)
T ss_pred -hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHH
Confidence 886 4666 9999999997655532 23 344 45667776664 4456554
No 63
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=1.6e-13 Score=147.66 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=112.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHh-cC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GK 84 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~-~~ 84 (337)
.+....++|+||||||||++++.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|..+ .. ..
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~ 266 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEG 266 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCC
Confidence 3445677899999999999999999986 6678888877765 468888888888998887 43 46
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 159 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR 159 (337)
++|||||||+.+.+..+ .+... .....|... ...+.+.+|++||..+ .+|++|.|
T Consensus 267 ~~ILfIDEih~l~~~g~--~~~~~---d~~~~Lk~~---------------l~~g~i~~IgaTt~~e~r~~~~~d~al~r 326 (852)
T TIGR03346 267 QIILFIDELHTLVGAGK--AEGAM---DAGNMLKPA---------------LARGELHCIGATTLDEYRKYIEKDAALER 326 (852)
T ss_pred CeEEEeccHHHhhcCCC--Ccchh---HHHHHhchh---------------hhcCceEEEEeCcHHHHHHHhhcCHHHHh
Confidence 99999999999875432 11111 111222111 2356789999999764 58999999
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhccCC----C--CCH---HHHHHHhcCCCch
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFRND----N--VAD---DDIVKLVDTFPGQ 203 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~----~--l~~---~~la~l~~gf~ga 203 (337)
||.. +.+ |+.+++..|++.+.... + +.. ...+.++.+|-..
T Consensus 327 --Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 327 --RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred --cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 8876 455 99999999987764332 2 333 4456777776543
No 64
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.49 E-value=3.1e-13 Score=128.49 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
..+..++||||||||||++|+++|++++..+..+.++.+.. . ..+...+.. ...+.+|||||++.+..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-----~-~~l~~~l~~------~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----P-GDLAAILTN------LEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----c-hhHHHHHHh------cccCCEEEEehHhhhCH
Confidence 44667999999999999999999999998877666543221 1 111222211 24678999999997643
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~----~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
.. ...|.+++++-. .+.++..+.. ...+.+.+|++||++..++++++. ||...+.+ |+
T Consensus 96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 21 112333332111 0111111000 123457899999999999999876 77766666 99
Q ss_pred HHHHHHHHHHhccCC--CCCHHH---HHHHhcCCC
Q 019694 172 REDRIGVCKGIFRND--NVADDD---IVKLVDTFP 201 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~--~l~~~~---la~l~~gf~ 201 (337)
.+++.+|++...... .++.+. +++.+.|.+
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 999999988877644 445544 444444544
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.47 E-value=4.3e-13 Score=129.69 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=90.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 100 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~ 100 (337)
.-.++||||||||||++|+.||...+.+|..+|+.. .+-+-+|+++++|......++..|||||||..+-..
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~- 119 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA- 119 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-
Confidence 346789999999999999999999999999999852 345778999999966666778899999999754221
Q ss_pred CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe-CC-CCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694 101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-ND-FSTLYAPLIRDGRMEKFYWA--PTREDRI 176 (337)
Q Consensus 101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT-N~-~~~ld~aLlR~gR~d~~i~~--P~~~~R~ 176 (337)
+ +.+|+-. .+.+.|++|++| -+ .-.|.+||+.+.| ++.+ .+.++..
T Consensus 120 ----Q--------QD~lLp~---------------vE~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~ 169 (436)
T COG2256 120 ----Q--------QDALLPH---------------VENGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIK 169 (436)
T ss_pred ----h--------hhhhhhh---------------hcCCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHH
Confidence 1 1222222 234667777754 33 4478999987555 3334 6888888
Q ss_pred HHHHH
Q 019694 177 GVCKG 181 (337)
Q Consensus 177 ~Il~~ 181 (337)
.+++.
T Consensus 170 ~~l~r 174 (436)
T COG2256 170 KLLKR 174 (436)
T ss_pred HHHHH
Confidence 88776
No 66
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.47 E-value=1e-12 Score=123.05 Aligned_cols=146 Identities=16% Similarity=0.251 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc------cccCCCCChHHHHHHHHHHH--------------HHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREA--------------ADII 80 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~------l~~~~~Ge~~~~ir~~f~~A--------------~~~~ 80 (337)
...|||+||||||||++|+++|+.+|.+++.+++.. +.+.+.|.....+...|... .-+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 356899999999999999999999999999887654 33333322212111111100 0000
Q ss_pred H-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc----CCCCCceEEEEeCCC-----
Q 019694 81 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----EENPRVPIIVTGNDF----- 150 (337)
Q Consensus 81 ~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~----~~~~~V~vI~TTN~~----- 150 (337)
. ...+.+|+|||||.+-. .+...|+.+++.. .+.+++.... ...+...||+|+|..
T Consensus 101 ~A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~-~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEEG-VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcCC-eEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 0 12456999999986421 2455666777632 2233322111 123466799999975
Q ss_pred CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 151 STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 151 ~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
..++++|++ ||- .+++ |+.++-.+|++.++
T Consensus 167 ~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 357889987 664 4555 99999999998876
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=1.2e-12 Score=132.69 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-h-cCceEEEecccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLMINDLDAG 96 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~-~~p~Il~IDEiD~l 96 (337)
.+++.+|||||||||||++|+++|++++.+++.+++++... ...++.....+..... . ..+.||+|||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 44889999999999999999999999999999999876432 2344444444422111 1 25789999999987
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc-hhccCCCceEEEeC--CCHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~-aLlR~gR~d~~i~~--P~~~ 173 (337)
.+... .. .+ ..|++++. ..+.++|++||++..+++ .|.+ |+. .+.+ |+.+
T Consensus 111 ~~~~d----~~----~~-~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~-~I~f~~~~~~ 163 (482)
T PRK04195 111 HGNED----RG----GA-RAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACL-MIEFKRLSTR 163 (482)
T ss_pred ccccc----hh----HH-HHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cce-EEEecCCCHH
Confidence 64211 00 11 22333333 234579999999998887 5544 333 3444 8999
Q ss_pred HHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694 174 DRIGVCKGIFRNDN--VADDDIVKLVDTFPG 202 (337)
Q Consensus 174 ~R~~Il~~~~~~~~--l~~~~la~l~~gf~g 202 (337)
+...+++.++...+ ++.+.+..+++...|
T Consensus 164 ~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 164 SIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999998886665 455666666665443
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.44 E-value=3e-12 Score=127.36 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=94.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 100 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~ 100 (337)
+..++||||||||||++|+++|+.++..++.++.+. .....++..++.+......+...||||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 347899999999999999999999999999988753 223456777777744434557899999999975321
Q ss_pred CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe--CCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694 101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 176 (337)
Q Consensus 101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT--N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~ 176 (337)
....|+..++ ...+++|++| |....++++|++ |+ ..+.+ |+.++..
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~ 157 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIE 157 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHH
Confidence 1223333333 1345666654 334578999987 55 33445 8888988
Q ss_pred HHHHHhccC----C-CCCHHHHHHHhcC
Q 019694 177 GVCKGIFRN----D-NVADDDIVKLVDT 199 (337)
Q Consensus 177 ~Il~~~~~~----~-~l~~~~la~l~~g 199 (337)
.+++..+.. . .++.+.+..+...
T Consensus 158 ~lL~~~l~~~~~~~i~i~~~al~~l~~~ 185 (413)
T PRK13342 158 QLLKRALEDKERGLVELDDEALDALARL 185 (413)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHh
Confidence 888776643 1 4555544444443
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.44 E-value=4.5e-12 Score=121.10 Aligned_cols=150 Identities=18% Similarity=0.292 Sum_probs=97.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAG 96 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l 96 (337)
-+.|..+||+||||+|||++|++++++++.+++.+++++ . . ...++........... ...+.||+|||+|.+
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c----c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 356788888999999999999999999999999988875 1 1 1223332222211111 246789999999976
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEe-CCCHHHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 175 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~-~P~~~~R 175 (337)
... ..+..|..+++ ....++.+|+|||.++.+++++.+ |+..+.. .|+.+++
T Consensus 113 ~~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~ 165 (316)
T PHA02544 113 GLA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQ 165 (316)
T ss_pred cCH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHH
Confidence 211 11233334444 223567899999999999999987 6655444 3999999
Q ss_pred HHHHHHh-------ccCC--CCCHHHHHHHhcCCC
Q 019694 176 IGVCKGI-------FRND--NVADDDIVKLVDTFP 201 (337)
Q Consensus 176 ~~Il~~~-------~~~~--~l~~~~la~l~~gf~ 201 (337)
.++++.+ +... .++.+.+..++....
T Consensus 166 ~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 166 IEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 8775443 2222 444455555555433
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.7e-12 Score=128.11 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=101.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc-----------------------EEecCCccccCCCCChHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-----------------------IMMSAGELESGNAGEPAKLIRQRY 73 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~-----------------------i~vs~s~l~~~~~Ge~~~~ir~~f 73 (337)
+.+.|.++||+||||+|||++|+++|+.+.... ..+... ... -....||+++
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~---~~~--i~i~~iR~l~ 106 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE---GLS--IGVDEVRELV 106 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHH
Confidence 345789999999999999999999999875431 111110 011 1223467777
Q ss_pred HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 153 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l 153 (337)
+.+...-..+...|+||||+|.+... . ...|+..++ ++..++++|.+|++++.|
T Consensus 107 ~~~~~~p~~~~~kViiIDead~m~~~------------a-anaLLk~LE-------------ep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 107 TIAARRPSTGRWRIVVIEDADRLTER------------A-ANALLKAVE-------------EPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred HHHHhCcccCCcEEEEEechhhcCHH------------H-HHHHHHHhh-------------cCCCCCeEEEEECChHHC
Confidence 77622112456679999999987321 1 133444555 344556777777779999
Q ss_pred cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhHhH
Q 019694 154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~~~ 208 (337)
.|++++ |+- .+.+ |+.++..+++.... +++.+ .++.++.|.++..+.+.
T Consensus 161 lpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 161 LPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred hHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999987 553 4555 88888887776322 45553 67778888888777654
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.3e-12 Score=134.07 Aligned_cols=164 Identities=12% Similarity=0.172 Sum_probs=104.4
Q ss_pred HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCC
Q 019694 7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNA 62 (337)
Q Consensus 7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~ 62 (337)
..+++++. +-+.+..+||+||+|||||++++.+|+.+++. ++.++.+ .
T Consensus 26 ~~L~~aL~--~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa------s 97 (830)
T PRK07003 26 RALTHALD--GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA------S 97 (830)
T ss_pred HHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc------c
Confidence 34445544 33678899999999999999999999998752 2222221 1
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694 63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 142 (337)
Q Consensus 63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~ 142 (337)
..+...++++.+.+...-..++..|+||||+|.+... ..+ .|+..++ +...++.
T Consensus 98 ~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~------------A~N-ALLKtLE-------------EPP~~v~ 151 (830)
T PRK07003 98 NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH------------AFN-AMLKTLE-------------EPPPHVK 151 (830)
T ss_pred cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH------------HHH-HHHHHHH-------------hcCCCeE
Confidence 1223345666655521112455689999999976321 122 3333444 4456789
Q ss_pred EEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHH---HHHhcCCCchhhH
Q 019694 143 IIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDI---VKLVDTFPGQSID 206 (337)
Q Consensus 143 vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~l---a~l~~gf~gadl~ 206 (337)
+|++||+++.|.+.++. |+-++.+- ++.++..++++.++..+++. .+.+ ++.++|--...|.
T Consensus 152 FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALs 219 (830)
T PRK07003 152 FILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALS 219 (830)
T ss_pred EEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999876 66544333 78888899998888776654 4434 4444443333333
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.6e-12 Score=130.18 Aligned_cols=136 Identities=15% Similarity=0.248 Sum_probs=90.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|..+||+||||||||++|+.+|+.++.. ++.++++ .......+|++.+
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e 111 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA------SNRGIENIRELRD 111 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh------hcccHHHHHHHHH
Confidence 467789999999999999999999998763 2222221 0112344566555
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...-..++..|+||||+|.+... ..+ .|+..++ ++...+++|++|+.++.|.
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~Ls~~------------A~N-ALLKtLE-------------EPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHMLTDQ------------SFN-ALLKTLE-------------EPPAHIVFILATTEFHKIP 165 (484)
T ss_pred HHHhhhhcCCCEEEEEechhhcCHH------------HHH-HHHHHhh-------------cCCCceEEEeecCChhhcc
Confidence 5422223456789999999976321 222 3333334 4456788999999999999
Q ss_pred chhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC
Q 019694 155 APLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV 188 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l 188 (337)
++++. |+-.+... ++.++..+.++.++...++
T Consensus 166 ~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 166 ETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred HHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 99986 66554444 7777777777777665555
No 73
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.41 E-value=1.3e-13 Score=121.24 Aligned_cols=127 Identities=12% Similarity=0.139 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC----CcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
|-..+||.||+|||||.+|+++|+.+.. +++.++++++.... +....+...+..+...+......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4456889999999999999999999996 99999999887611 11122233333332222222334999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 152 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ 152 (337)
...+. +....+....+.+.|+.+++.-+... +........++++|+|+|--..
T Consensus 80 a~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d--~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSN--SGGADVSGEGVQNSLLQLLEGGTLTD--SYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEE--TTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccc--cccchhhHHHHHHHHHHHhcccceec--ccceEEEeCCceEEEecccccc
Confidence 98763 34456777788899999998433221 1112345788999999997553
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5e-12 Score=127.52 Aligned_cols=148 Identities=12% Similarity=0.152 Sum_probs=96.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|.++|||||||||||++|+++|+.++. .++.++++. ..+...+|.+..
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~ 107 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRD 107 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHH
Confidence 56888999999999999999999999865 233443321 122345566555
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...-..+...||||||+|.+.. .....|+..++ ...+.+.+|++||.++.++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHH-------------HHHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence 542111134567999999987631 11223444444 2334577787888888999
Q ss_pred chhccCCCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCC
Q 019694 155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFP 201 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~ 201 (337)
++++. |+. .+.+ |+.++...+++..+... .++.+.+..++....
T Consensus 162 ~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 162 PTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 99987 554 3444 88889888888887654 455566665555433
No 75
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=1.5e-12 Score=137.78 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=95.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-----CCCCChHHHH----HHHHHHHHHHHHhcCceEEEecc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-----~~~Ge~~~~i----r~~f~~A~~~~~~~~p~Il~IDE 92 (337)
..+||+||||||||++|+++|+.++.+++.++++++.. .++|.+...+ ...+..+ ++....+||||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDE 565 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDE 565 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEEEecc
Confidence 46899999999999999999999999999999887643 2223221111 1122222 2455669999999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC----------------------
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---------------------- 150 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~---------------------- 150 (337)
||++.. .+.+.|++++|+-....-.| ......+++||+|||.-
T Consensus 566 ieka~~-------------~v~~~LLq~ld~G~ltd~~g--~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~ 630 (758)
T PRK11034 566 IEKAHP-------------DVFNLLLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME 630 (758)
T ss_pred HhhhhH-------------HHHHHHHHHHhcCeeecCCC--ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHH
Confidence 998631 35667778887432221111 12345788999999932
Q ss_pred ---CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 151 ---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 151 ---~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
..+.|.|+. |+|.++.+ .+.++..+|+...+
T Consensus 631 ~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 631 EIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 125577764 89988877 67788888876554
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.4e-12 Score=132.35 Aligned_cols=164 Identities=13% Similarity=0.185 Sum_probs=104.9
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------cEEecCCccc
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGELE 58 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------------~i~vs~s~l~ 58 (337)
.+++++. .-+.+..+||+||+|||||++|+.+|+.+... ++.++.+
T Consensus 27 ~L~~al~--~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa--- 101 (700)
T PRK12323 27 ALTHALE--QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA--- 101 (700)
T ss_pred HHHHHHH--hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc---
Confidence 4444444 33678899999999999999999999998761 2222221
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCC
Q 019694 59 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 138 (337)
Q Consensus 59 ~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~ 138 (337)
.......+|++.+.+...-..++..|+||||+|.+... ..+ .|+..++ +..
T Consensus 102 ---s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~------------AaN-ALLKTLE-------------EPP 152 (700)
T PRK12323 102 ---SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------AFN-AMLKTLE-------------EPP 152 (700)
T ss_pred ---ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH------------HHH-HHHHhhc-------------cCC
Confidence 01123445666655422223556789999999976321 223 3434444 456
Q ss_pred CCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH--H---HHHHHhcCCCchhhHh
Q 019694 139 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD--D---DIVKLVDTFPGQSIDF 207 (337)
Q Consensus 139 ~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~--~---~la~l~~gf~gadl~~ 207 (337)
.++.+|++||+++.|.+.++. |+-.+..- ++.++..+.++.++...++.. + .|++.++|-....+.+
T Consensus 153 ~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 788999999999999999886 55443333 888888888888776665543 3 3444555544444433
No 77
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=1e-12 Score=131.99 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=107.6
Q ss_pred hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694 4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAD 78 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~ 78 (337)
.+...++.+...++ .....++||||||||||+|++++++++ +..++.+++.++.+.+...........|..
T Consensus 132 ~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~--- 207 (450)
T PRK00149 132 LAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKE--- 207 (450)
T ss_pred HHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHH---
Confidence 34455555555444 223569999999999999999999987 556778887766543322110000111221
Q ss_pred HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Cc
Q 019694 79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LY 154 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld 154 (337)
+-..+.+|+|||||.+.++.. . ...|+.+++ .. ...++ .+|+|+|. |.. ++
T Consensus 208 --~~~~~dlLiiDDi~~l~~~~~-------~----~~~l~~~~n--------~l---~~~~~-~iiits~~~p~~l~~l~ 262 (450)
T PRK00149 208 --KYRSVDVLLIDDIQFLAGKER-------T----QEEFFHTFN--------AL---HEAGK-QIVLTSDRPPKELPGLE 262 (450)
T ss_pred --HHhcCCEEEEehhhhhcCCHH-------H----HHHHHHHHH--------HH---HHCCC-cEEEECCCCHHHHHHHH
Confidence 122578999999998754321 1 112222222 11 01122 35556654 344 66
Q ss_pred chhccCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhHhHHHHH
Q 019694 155 APLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGALR 212 (337)
Q Consensus 155 ~aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~~~~alr 212 (337)
+.|.. ||. ..+.+ |+.++|.+|++..+... .++.+.+..+++.+.+.--+..+++.
T Consensus 263 ~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 263 ERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 77664 665 45555 99999999999988754 56778888888888875444445544
No 78
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.38 E-value=7.2e-12 Score=128.32 Aligned_cols=164 Identities=19% Similarity=0.314 Sum_probs=103.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH----hcCceEEEecc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMIND 92 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~----~~~p~Il~IDE 92 (337)
+-++.|++||+||||-||||||+.||+++|+.++.|++|+- .+...++.....|..+-. ..+|.||+|||
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDE 395 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDE 395 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEec
Confidence 44555899999999999999999999999999999999963 234455555555532222 37899999999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhC--CCccccCCCc-c--ccC---CCCCceEEEEeCCCCCCcchhccCCC-c
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIAD--NPTCVQLPGM-Y--NKE---ENPRVPIIVTGNDFSTLYAPLIRDGR-M 163 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld--~~~~~~~~g~-~--~~~---~~~~V~vI~TTN~~~~ld~aLlR~gR-~ 163 (337)
||... .....+++.++. +++..--.+. . ... ..-..||||.+|+ |+.+-||+-| +
T Consensus 396 IDGa~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~ 459 (877)
T KOG1969|consen 396 IDGAP-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPF 459 (877)
T ss_pred ccCCc-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccc
Confidence 99421 111222333332 2211111110 0 000 1124599999998 6666677666 5
Q ss_pred eEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 202 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~g 202 (337)
-.++.+ |......+-++.+...++ .+...|..+++-+.+
T Consensus 460 A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 460 AEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred eEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 566666 555555666777766554 455677777765544
No 79
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=8.6e-12 Score=116.01 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=103.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
...=.+|||||||.||||||+.+|+++|.++-..++..+.. +..+ -.++. .-....|||||||..+..
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-----~gDl-aaiLt------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-----PGDL-AAILT------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-----hhhH-HHHHh------cCCcCCeEEEehhhhcCh
Confidence 45678999999999999999999999999999988875532 2111 11111 223557999999987643
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-----ccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-----NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-----~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
. +...|.-.+++-..--+-|.- ..-+.+..-+|++|.+...|..||.- ||-....+ .+
T Consensus 118 ~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~ 182 (332)
T COG2255 118 A-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYT 182 (332)
T ss_pred h-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCC
Confidence 2 222333233321111111110 01234556799999999999999975 66655555 99
Q ss_pred HHHHHHHHHHhccCCCCC--H---HHHHHHhcCCCc
Q 019694 172 REDRIGVCKGIFRNDNVA--D---DDIVKLVDTFPG 202 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l~--~---~~la~l~~gf~g 202 (337)
.++..+|+.......++. . .+|++.+.|-+-
T Consensus 183 ~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 183 VEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 999999988777655444 3 566666666664
No 80
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.38 E-value=1.4e-12 Score=129.26 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=104.3
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
+...++.+...++ .....++||||||+|||+|++++++++ +..++.+++.++...+.......-...|...
T Consensus 121 a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (405)
T TIGR00362 121 AHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEK--- 196 (405)
T ss_pred HHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 4455555555444 234579999999999999999999987 5678888877654332211000000112111
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Ccc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYA 155 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~ 155 (337)
-..+.+|+|||||.+.++.. . ...|+.+++ .. ...++ .+|+|+|. |+. +++
T Consensus 197 --~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n--------~~---~~~~~-~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 197 --YRSVDLLLIDDIQFLAGKER--T---------QEEFFHTFN--------AL---HENGK-QIVLTSDRPPKELPGLEE 251 (405)
T ss_pred --HHhCCEEEEehhhhhcCCHH--H---------HHHHHHHHH--------HH---HHCCC-CEEEecCCCHHHHhhhhh
Confidence 12367999999998754321 1 112233333 11 01122 35555554 443 556
Q ss_pred hhccCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhHhHHHHH
Q 019694 156 PLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGALR 212 (337)
Q Consensus 156 aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~~~~alr 212 (337)
.+.. ||. ..+.+ |+.++|.+|++..+... .++.+.+..+++.+.+.--+..+++.
T Consensus 252 ~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 252 RLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred hhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6664 665 34555 99999999999888654 45667777777777764333334443
No 81
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=2.5e-12 Score=123.25 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=98.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC--CCCChHHH----------HHHHHHHHHHHHHhcCc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKL----------IRQRYREAADIIKKGKM 85 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~--~~Ge~~~~----------ir~~f~~A~~~~~~~~p 85 (337)
+...+.|||.||||||||++++.+|+.++++++.++++...+. ++|..... ....+-.| ...+
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g 135 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHN 135 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCC
Confidence 3446779999999999999999999999999999988776554 45543211 11222333 2467
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCCC------------C
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------------T 152 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~~------------~ 152 (337)
++|++||||..-. .+...|..+++....+.+++.... ...+...||+|+|... .
T Consensus 136 ~illlDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 136 VALCFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred eEEEechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 8999999996421 123344455564323333332112 2445778999999754 4
Q ss_pred CcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
+++|++- ||-..+.+ |+.++-.+|+....
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 5788875 88777766 99999999987664
No 82
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=2.2e-12 Score=108.67 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=73.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc------CCC---CChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------GNA---GEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~------~~~---Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
.|+|+||||||||++|+.+|+.++.+++.++.+.... .+. +.. ......+-+| ...+++++||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~-~~~~~~l~~a-----~~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQF-EFKDGPLVRA-----MRKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTT-CEEE-CCCTT-----HHEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccc-cccccccccc-----ccceeEEEECCc
Confidence 4899999999999999999999999998887775321 111 000 0000000111 126899999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCC------CceEEEEeCCCC----CCcchhccCCCc
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 163 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~------~V~vI~TTN~~~----~ld~aLlR~gR~ 163 (337)
+..- ..+.+.|+.++++-......+........ +..+|+|+|..+ .+++||+| ||
T Consensus 75 n~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 8532 23455666777754433222221111122 489999999999 99999998 54
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=9.1e-12 Score=128.37 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=100.5
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCC
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 61 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~ 61 (337)
...+++++. +-+.+.++||+||||||||++|+++|+.++.. ++.+++++
T Consensus 24 v~~L~~aI~--~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs----- 96 (702)
T PRK14960 24 SRALSSALE--RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS----- 96 (702)
T ss_pred HHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-----
Confidence 334445444 33668899999999999999999999998752 23333221
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCc
Q 019694 62 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 141 (337)
Q Consensus 62 ~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V 141 (337)
......+|++...+...-..++..|+||||+|.+... . ...|+..++ .....+
T Consensus 97 -~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~------------A-~NALLKtLE-------------EPP~~v 149 (702)
T PRK14960 97 -RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH------------S-FNALLKTLE-------------EPPEHV 149 (702)
T ss_pred -cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH------------H-HHHHHHHHh-------------cCCCCc
Confidence 1123445665555422112456789999999976321 1 223444544 334667
Q ss_pred eEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHh
Q 019694 142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLV 197 (337)
Q Consensus 142 ~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~ 197 (337)
.+|++|+++..++++++. |+.++-.- ++.++..+.++.++...++. .+.+..++
T Consensus 150 ~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA 206 (702)
T PRK14960 150 KFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA 206 (702)
T ss_pred EEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 889999999999988875 66543333 88889888888888766544 44444343
No 84
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=4.1e-12 Score=122.15 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=92.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHH---HHhcCceEEEecccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLMINDLD 94 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~---~~~~~p~Il~IDEiD 94 (337)
.+|||||||||||++|+++|+++. ..++.++.++..+ ...+++..+..... ...+...|++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 489999999999999999999973 2345555543211 12344433322110 012457899999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
.+.... .+.|...++ .......+|++||..+.+.++|.. |+. .+.+ |+.
T Consensus 110 ~lt~~a-------------q~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~ 160 (319)
T PLN03025 110 SMTSGA-------------QQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSD 160 (319)
T ss_pred hcCHHH-------------HHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhh-cccCCCCCH
Confidence 864211 223333333 122345688899999999999886 443 3444 889
Q ss_pred HHHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694 173 EDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 202 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~--l~~~~la~l~~gf~g 202 (337)
++...+++.++...+ ++.+.+..++....|
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999888887665 456777777665544
No 85
>PRK06893 DNA replication initiation factor; Validated
Probab=99.35 E-value=4.5e-12 Score=116.39 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=89.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~ 99 (337)
.++||||||||||+|++++|+++ +.....++..... ......++.. .+..+|+||||+.+.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~------~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL------EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc------ccCCEEEEeChhhhcCC
Confidence 58999999999999999999986 3333444432110 0111122222 34579999999987543
Q ss_pred CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCCCCc---chhccCCCceEEEeC--CCHH
Q 019694 100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTLY---APLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~~ld---~aLlR~gR~d~~i~~--P~~~ 173 (337)
.. ....|.++++ .. ...++.++|.|+| .|..++ +.|..+.+....+.+ |+.+
T Consensus 107 ~~-----------~~~~l~~l~n--------~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 107 EE-----------WELAIFDLFN--------RI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred hH-----------HHHHHHHHHH--------HH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 21 0112333333 11 1123334455555 466554 788876666677777 9999
Q ss_pred HHHHHHHHhccCC--CCCHHHHHHHhcCCCch
Q 019694 174 DRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 203 (337)
Q Consensus 174 ~R~~Il~~~~~~~--~l~~~~la~l~~gf~ga 203 (337)
+|.+|++...... .++.+.+.-++..+++.
T Consensus 165 ~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 165 QKIIVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 9999998777544 45667777777777754
No 86
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.2e-12 Score=119.63 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=80.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc-ccCCCCChHHHHH-HHHHHHHHHHHhcCceEEEeccccccccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEPAKLIR-QRYREAADIIKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l-~~~~~Ge~~~~ir-~~f~~A~~~~~~~~p~Il~IDEiD~l~~~ 99 (337)
..|||.||.|||||+||+.+|+.+++||-.-++..| ..+|+|+.-.+|- .+...|.--+.+....||+|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 569999999999999999999999999999999998 6789999765543 34444422233557789999999999876
Q ss_pred CCC-CcccchhhHhHHHHHHhhhCC
Q 019694 100 MGG-TTQYTVNNQMVNATLMNIADN 123 (337)
Q Consensus 100 ~~~-~~~~~~~~~~v~~~Ll~lld~ 123 (337)
..+ +-...+...-++|.|+.++..
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 542 233556777899999999984
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.34 E-value=1.6e-11 Score=130.32 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=95.3
Q ss_pred CcE-EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC------------CCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694 21 PLI-LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMCC 87 (337)
Q Consensus 21 p~g-iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~~~p~I 87 (337)
|.| +||+||||||||++|+++|+.++.+++.++++++.++ |+|... ...+.++ ++....+|
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~---~~~l~~~---~~~~p~~V 556 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ---GGLLTEA---VRKHPHCV 556 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch---hhHHHHH---HHhCCCeE
Confidence 554 7899999999999999999999999999998886432 333211 0112222 24556789
Q ss_pred EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----------------
Q 019694 88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---------------- 151 (337)
Q Consensus 88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---------------- 151 (337)
|||||||++.. .+...|++++|+-... ++.....+..+++||+|||.-.
T Consensus 557 vllDEieka~~-------------~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~ 621 (731)
T TIGR02639 557 LLLDEIEKAHP-------------DIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVE 621 (731)
T ss_pred EEEechhhcCH-------------HHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhH
Confidence 99999997532 2456777888843211 1111223456789999998742
Q ss_pred ---------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 152 ---------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 152 ---------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
.+.|+|+ +|+|.++.+ .+.++..+|+...+
T Consensus 622 ~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 622 SKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred HHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 2456665 589888877 78888888876655
No 88
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.33 E-value=1.2e-11 Score=116.14 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=104.3
Q ss_pred hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCCccccCCCCChHHHHHHHHHHHH
Q 019694 4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAA 77 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~ 77 (337)
.++++++|-+...+ --.+|||||||||||+.|+++|+++..+ +...+.|+..+..++.. +. .-|..-.
T Consensus 43 ~vV~~L~~a~~~~~---lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~-Ki--k~fakl~ 116 (346)
T KOG0989|consen 43 HVVQVLKNALLRRI---LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE-KI--KNFAKLT 116 (346)
T ss_pred HHHHHHHHHHhhcC---CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh-hh--cCHHHHh
Confidence 46667777766622 2368999999999999999999998762 23334443332222111 10 2233321
Q ss_pred HHHH-----hcCc-eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 78 DIIK-----KGKM-CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 78 ~~~~-----~~~p-~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
...+ ...| -|++|||.|.+... ..++|...++ .....+.+|..||..+
T Consensus 117 ~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 117 VLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILICNYLS 170 (346)
T ss_pred hccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEcCChh
Confidence 1111 1122 69999999987432 2345555555 3345678999999999
Q ss_pred CCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH-HHHHHHhcCCCchhh
Q 019694 152 TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSI 205 (337)
Q Consensus 152 ~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~-~~la~l~~gf~gadl 205 (337)
.|+.++.. |+-++.+- ...+.....++.+..+++++. ++.-++.-..++.||
T Consensus 171 rii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 171 RIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred hCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 99999986 88886666 444556677788887777765 333334444455444
No 89
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=4.3e-11 Score=116.43 Aligned_cols=144 Identities=15% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCccccC----------CC--CC----hHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------NA--GE----PAKLIRQRY 73 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~~~----------~~--Ge----~~~~ir~~f 73 (337)
..|..++|+||||||||++++++++++. +.++.+++....+. .. |. ......+.|
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4466799999999999999999998753 45777777543221 00 10 000011222
Q ss_pred HHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-
Q 019694 74 REAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS- 151 (337)
Q Consensus 74 ~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~- 151 (337)
....+.+. ...+.||+|||+|.+.+... ..+. .|+.+.+ +......++.+|++||+++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~---------~~L~-~l~~~~~----------~~~~~~~~v~lI~i~n~~~~ 177 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDD---------DLLY-QLSRARS----------NGDLDNAKVGVIGISNDLKF 177 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCc---------HHHH-hHhcccc----------ccCCCCCeEEEEEEECCcch
Confidence 22222223 45688999999999872211 1121 2222211 1112346789999999986
Q ss_pred --CCcchhccCCCce-EEEeC--CCHHHHHHHHHHhcc
Q 019694 152 --TLYAPLIRDGRME-KFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 152 --~ld~aLlR~gR~d-~~i~~--P~~~~R~~Il~~~~~ 184 (337)
.+++.+.+ ||. ..+.+ ++.++..+|++..+.
T Consensus 178 ~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 RENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 47777765 443 34555 889999999887764
No 90
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.32 E-value=1.4e-11 Score=101.66 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
..+.++|+||||||||++++.+++.+ +.+++.++..+.............. .+...........+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45789999999999999999999998 8888888887654432221110000 0111111224567899999999875
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--CCcchhccCCCceEEEeC
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWA 169 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--~ld~aLlR~gR~d~~i~~ 169 (337)
... ....++.++.. .........++.+|++||... .+++.+.. |++..+.+
T Consensus 97 ~~~-------------~~~~~~~~i~~-------~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~ 149 (151)
T cd00009 97 SRG-------------AQNALLRVLET-------LNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVI 149 (151)
T ss_pred hHH-------------HHHHHHHHHHh-------cCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeec
Confidence 110 01122222220 000001246789999999887 67777664 88776665
No 91
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=8.7e-12 Score=125.00 Aligned_cols=177 Identities=15% Similarity=0.230 Sum_probs=101.8
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChH-HHHHHHHHHHHHH
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPA-KLIRQRYREAADI 79 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~-~~ir~~f~~A~~~ 79 (337)
...++.+...++. ...++||||||+|||+|++++++++ +..++.+++.++...+..... ..+ .-|...
T Consensus 117 ~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~--- 190 (440)
T PRK14088 117 YHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREK--- 190 (440)
T ss_pred HHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHH---
Confidence 3444444444443 3459999999999999999999986 456777777665433211000 000 112221
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe-CCCCC---Ccc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-NDFST---LYA 155 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT-N~~~~---ld~ 155 (337)
....+.+|+|||++.+.+..+ . ...+..++-.+.+ ..+ .+|+|| +.|.. +.+
T Consensus 191 -~~~~~dvLlIDDi~~l~~~~~--~-----q~elf~~~n~l~~---------------~~k-~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 191 -YRKKVDVLLIDDVQFLIGKTG--V-----QTELFHTFNELHD---------------SGK-QIVICSDREPQKLSEFQD 246 (440)
T ss_pred -HHhcCCEEEEechhhhcCcHH--H-----HHHHHHHHHHHHH---------------cCC-eEEEECCCCHHHHHHHHH
Confidence 123688999999998754322 1 1112222211212 122 455555 45554 445
Q ss_pred hhccCCCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhHhHHHHH
Q 019694 156 PLIRDGRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGALR 212 (337)
Q Consensus 156 aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~~~~alr 212 (337)
.+..+......+.+ |+.+.|.+|++...... .++.+.+..+++.+++.--+..+++.
T Consensus 247 rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 247 RLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred HHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 56542233345555 99999999999887644 56667777888887764333334443
No 92
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=1.5e-11 Score=126.43 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=101.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
.++|||++|+|||+|++++++++ +..++.++..++.+.+.........+.|.+- -....+|+||||+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~ 390 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLE 390 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhcccc
Confidence 48999999999999999999986 4677888887765543321111011223321 2356899999999876
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC----CCCcchhccCCCceEEEeC--CC
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF----STLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~----~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
++.. . ... |.++++ .. ...+..||+|+|.+ ..+++.|..+...-..+.+ |+
T Consensus 391 gke~--t-----qee----LF~l~N--------~l----~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 391 DKES--T-----QEE----FFHTFN--------TL----HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred CCHH--H-----HHH----HHHHHH--------HH----HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCC
Confidence 4332 1 112 223333 11 01223577788874 3577888764444566666 99
Q ss_pred HHHHHHHHHHhccCCCC--CHHHHHHHhcCCCchhhHhHHHHH
Q 019694 172 REDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQSIDFFGALR 212 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~l--~~~~la~l~~gf~gadl~~~~alr 212 (337)
.+.|.+|++..+...++ +.+.+.-++..++..--+..+++.
T Consensus 448 ~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 448 LETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999998876654 457777777777764333334433
No 93
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.9e-11 Score=127.03 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=100.3
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE------Ee--cCCccccC-------CCC---ChHHHH
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI------MM--SAGELESG-------NAG---EPAKLI 69 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i------~v--s~s~l~~~-------~~G---e~~~~i 69 (337)
.+++++.. -+.|..+||+||||||||++|+++|+.++..-. .. ++-.+..+ +-+ .....+
T Consensus 27 ~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI 104 (944)
T PRK14949 27 ALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT 104 (944)
T ss_pred HHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH
Confidence 34555443 367889999999999999999999999876411 00 00000000 001 122345
Q ss_pred HHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694 70 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 149 (337)
Q Consensus 70 r~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~ 149 (337)
|++...+...-..+...|+||||+|.+.. .....|+..+. +....+.+|++|+.
T Consensus 105 ReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE-------------EPP~~vrFILaTTe 158 (944)
T PRK14949 105 RELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE-------------EPPEHVKFLLATTD 158 (944)
T ss_pred HHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh-------------ccCCCeEEEEECCC
Confidence 66555542222245678999999997631 11234444444 44567788888999
Q ss_pred CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-----HHHHHHhcCCCchh
Q 019694 150 FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-----DDIVKLVDTFPGQS 204 (337)
Q Consensus 150 ~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-----~~la~l~~gf~gad 204 (337)
+..|.+.++. |+-+ +.+ ++.++..+.++.++...++.. ..|++.+.|-.+..
T Consensus 159 ~~kLl~TIlS--RCq~-f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 159 PQKLPVTVLS--RCLQ-FNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred chhchHHHHH--hheE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 9999988876 5543 444 778888888877776555443 33444455444433
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=4.5e-11 Score=124.12 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=102.1
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE-------------ecCC---ccc--cCCCCChHH
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MSAG---ELE--SGNAGEPAK 67 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~-------------vs~s---~l~--~~~~Ge~~~ 67 (337)
+..+++++.. -+.|.++||+||||||||++|+++|+.++..-.. +..+ ++. +...+.+..
T Consensus 25 v~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd 102 (709)
T PRK08691 25 VKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID 102 (709)
T ss_pred HHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH
Confidence 3445555553 3678999999999999999999999997653110 0001 010 001122334
Q ss_pred HHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe
Q 019694 68 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 147 (337)
Q Consensus 68 ~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT 147 (337)
.|+++...+...-..+...||||||+|.+.. ...+ .|+..++ +....+.+|++|
T Consensus 103 ~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A~N-ALLKtLE-------------EPp~~v~fILaT 156 (709)
T PRK08691 103 NIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SAFN-AMLKTLE-------------EPPEHVKFILAT 156 (709)
T ss_pred HHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HHHH-HHHHHHH-------------hCCCCcEEEEEe
Confidence 5677766552111235668999999986531 1122 3444444 334667899999
Q ss_pred CCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHhcCC
Q 019694 148 NDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTF 200 (337)
Q Consensus 148 N~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~~gf 200 (337)
|+++.+.+.++ +|+-.+-.- ++.++...+++.++...++. ...+..++...
T Consensus 157 td~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 157 TDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred CCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 99999999987 466443322 88899899998888877654 44444444433
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=2.5e-11 Score=118.79 Aligned_cols=148 Identities=12% Similarity=0.155 Sum_probs=89.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe--------cC--------Cccc--cCCCCChHHHHHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM--------SA--------GELE--SGNAGEPAKLIRQRYREAADII 80 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v--------s~--------s~l~--~~~~Ge~~~~ir~~f~~A~~~~ 80 (337)
+.|..+||+||||+|||++|+++|+++....... ++ .++. +.........++++...+...-
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p 115 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP 115 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc
Confidence 5788899999999999999999999986421100 00 0111 0000012233455544431000
Q ss_pred HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694 81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 160 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~ 160 (337)
..+...|++|||+|.+.. ...+ .|+..++ +....+.+|++|++++.+.+++..
T Consensus 116 ~~~~~kviIIDEa~~l~~------------~a~n-aLLk~lE-------------e~~~~~~fIl~t~~~~~l~~tI~S- 168 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSR------------HSFN-ALLKTLE-------------EPPQHIKFILATTDVEKIPKTILS- 168 (363)
T ss_pred ccCCceEEEEEChhhcCH------------HHHH-HHHHHHh-------------cCCCCeEEEEEcCChHhhhHHHHh-
Confidence 123457999999997631 1112 2333344 234567788888889999999875
Q ss_pred CCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHH
Q 019694 161 GRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVK 195 (337)
Q Consensus 161 gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~ 195 (337)
|+- .+.+ |+.++..++++..+...+ ++.+.+..
T Consensus 169 -Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ 205 (363)
T PRK14961 169 -RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKL 205 (363)
T ss_pred -hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 553 3455 889999999988887665 45544433
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=2.8e-11 Score=121.36 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=100.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
-..++||||||+|||+|++++++++ +..++.++..++...+.......-.+.|... -....+|+||||+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFS 215 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhc
Confidence 3579999999999999999999976 5777888776543321100000000122221 2467799999999875
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC----CCCcchhccCCCce--EEEeC--
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF----STLYAPLIRDGRME--KFYWA-- 169 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~----~~ld~aLlR~gR~d--~~i~~-- 169 (337)
++.. . .+.+..++-.+.+ .+..+|+|||.+ ..+++.|.. ||. ..+.+
T Consensus 216 ~k~~--~-----qeelf~l~N~l~~----------------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~ 270 (445)
T PRK12422 216 GKGA--T-----QEEFFHTFNSLHT----------------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHP 270 (445)
T ss_pred CChh--h-----HHHHHHHHHHHHH----------------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCC
Confidence 4321 1 1122222211111 123677777763 356778876 664 66666
Q ss_pred CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCchhhHhHHHHHhh
Q 019694 170 PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGALRAR 214 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~gadl~~~~alra~ 214 (337)
|+.++|.+|++......+ ++.+.+.-++..+++.--+..+++...
T Consensus 271 pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l 317 (445)
T PRK12422 271 LTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLL 317 (445)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999988876654 566777778888886544444555443
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.28 E-value=3.1e-11 Score=115.84 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=91.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCC-------------CCC-------hHHHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA 77 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~-------------~Ge-------~~~~ir~~f~~A~ 77 (337)
.+||+||||||||++|+++++++. .+++.++++++.... .+. ....++.+.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 689999999999999999999874 346777776653221 011 0112222222221
Q ss_pred HHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694 78 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 156 (337)
Q Consensus 78 ~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a 156 (337)
.... ...+.+|+|||+|.+... ..+.|..++++ ......+|++|+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le~-------------~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIMEQ-------------YSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHHh-------------ccCCCeEEEEeCChhhCchh
Confidence 1111 134569999999976321 11234344441 12234567777777788888
Q ss_pred hccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCchhh
Q 019694 157 LIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI 205 (337)
Q Consensus 157 LlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~gadl 205 (337)
|.. |+.. +.+ |+.++...+++.++...+ ++.+.+..++... +.++
T Consensus 172 L~s--r~~~-v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdl 220 (337)
T PRK12402 172 IRS--RCLP-LFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDL 220 (337)
T ss_pred hcC--CceE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence 865 4433 333 889999999988877665 4556666666655 3344
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=7.1e-11 Score=125.98 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=93.6
Q ss_pred HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------------------------cEEecCCccccC
Q 019694 7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESG 60 (337)
Q Consensus 7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--------------------------~i~vs~s~l~~~ 60 (337)
..+++++. .-+.+..+||+||+|||||++|+.+|+.+.+. ++.+++..
T Consensus 25 ~~L~~~i~--~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas---- 98 (824)
T PRK07764 25 EPLSTALD--SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS---- 98 (824)
T ss_pred HHHHHHHH--hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc----
Confidence 33444444 33678899999999999999999999998642 12222110
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCC
Q 019694 61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 140 (337)
Q Consensus 61 ~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~ 140 (337)
......||++-+.+...-......|+||||+|.+.. .....|+.+++ +....
T Consensus 99 --~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLLK~LE-------------EpP~~ 150 (824)
T PRK07764 99 --HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNALLKIVE-------------EPPEH 150 (824)
T ss_pred --cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHHHHHHHh-------------CCCCC
Confidence 011234454433331111245678999999998732 11234555655 34456
Q ss_pred ceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC
Q 019694 141 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 141 V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~ 189 (337)
+.+|++|+.++.|.+.|+. |+-.+-+. ++.++..+++..++...++.
T Consensus 151 ~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred eEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 7888888889999988875 44333222 78888888888888766663
No 99
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=6.6e-11 Score=120.18 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=96.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe------------cCC--------ccc--cCCCCChHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM------------SAG--------ELE--SGNAGEPAKLIRQRYRE 75 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v------------s~s--------~l~--~~~~Ge~~~~ir~~f~~ 75 (337)
-+.|.++||+||||||||++|+++|+.++..--.. ++. ++. +.....+...++++.+.
T Consensus 40 ~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~ 119 (507)
T PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIES 119 (507)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHH
Confidence 36788999999999999999999999986531100 000 110 00011233456777766
Q ss_pred HHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694 76 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 155 (337)
Q Consensus 76 A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~ 155 (337)
+...--.+...|++|||+|.+.. ...+ .|+..++ +....+.+|++|+.++.+++
T Consensus 120 a~~~P~~~~~KVvIIDEa~~Ls~------------~a~n-aLLk~LE-------------epp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVHMLSK------------GAFN-ALLKTLE-------------EPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred HHhccccCCcEEEEEEChhhcCH------------HHHH-HHHHHHh-------------hcCCCEEEEEEeCChHHhhH
Confidence 62221245667999999987631 1122 3333334 34566788888889999999
Q ss_pred hhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhc
Q 019694 156 PLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVD 198 (337)
Q Consensus 156 aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~ 198 (337)
+++. |+- .+.+ ++.++...+++.+++..++ +.+.+..++.
T Consensus 174 tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 174 TIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9876 443 3444 8999999999988877665 4444444433
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.28 E-value=2.7e-11 Score=109.88 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=96.7
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 81 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~ 81 (337)
+...++.+.. ...+..++|+||||||||++|+++++++ +.+++.++++++.... ...+...
T Consensus 25 ~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~----- 88 (226)
T TIGR03420 25 LLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGL----- 88 (226)
T ss_pred HHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhc-----
Confidence 3344444433 3457889999999999999999999876 4677888877654321 1222211
Q ss_pred hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCCCc---chh
Q 019694 82 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APL 157 (337)
Q Consensus 82 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~ld---~aL 157 (337)
....+|+|||+|.+..... . ...|..+++ .. .. .+..+|+|||. +..++ +.|
T Consensus 89 -~~~~lLvIDdi~~l~~~~~------~-----~~~L~~~l~--------~~---~~-~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 89 -EQADLVCLDDVEAIAGQPE------W-----QEALFHLYN--------RV---RE-AGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred -ccCCEEEEeChhhhcCChH------H-----HHHHHHHHH--------HH---HH-cCCeEEEECCCChHHCCcccHHH
Confidence 2346999999997643211 0 112222222 00 01 11256666664 33332 556
Q ss_pred ccCCCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhH
Q 019694 158 IRDGRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 158 lR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~ 206 (337)
.++..+...+.+ |+.+++..+++.+.... .++.+.+..+...++|.-.+
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~ 197 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGS 197 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 643333466777 78899999988776543 56677788888876665443
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=4.8e-11 Score=123.84 Aligned_cols=153 Identities=12% Similarity=0.156 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.+..+||+||||||||++|+.+|+.++.. ++.++++. ......+|++.+
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~ 109 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLD 109 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHH
Confidence 578889999999999999999999998763 12222211 012234565555
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...-..+...|+||||+|.+... .. ..|+..++ ++...+.+|++|++++.|.
T Consensus 110 ~~~~~p~~g~~KV~IIDEah~Ls~~------------a~-NALLKtLE-------------EPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVHMLSRH------------SF-NALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred HHHhhhhcCCCEEEEEechHhCCHH------------HH-HHHHHHHH-------------cCCCCeEEEEecCCccccc
Confidence 5422112456789999999976321 12 23444444 4556788888899999999
Q ss_pred chhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH--H---HHHHHhcCCCchhhH
Q 019694 155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD--D---DIVKLVDTFPGQSID 206 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~--~---~la~l~~gf~gadl~ 206 (337)
+.++. |+- .+.+ ++.++..+.++.++...++.. . .|++.++|-.+..+.
T Consensus 164 ~TI~S--RC~-~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILS--RCL-QFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHh--hhe-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 98875 653 3445 888888888888876555543 2 345555554444333
No 102
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.27 E-value=4.5e-11 Score=97.49 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=78.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCccccC--------------CCCChHHHHHHHHHHHHHHHHhc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~l~~~--------------~~Ge~~~~ir~~f~~A~~~~~~~ 83 (337)
+..++|+||||||||++++.+|..+... ++.++.+..... ........++..+..| +..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 4679999999999999999999999875 777777654322 2223344555556666 766
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
.+.+|||||++.+..... . ....... . ...........+..+|+|+|......+..+++ |+
T Consensus 78 ~~~viiiDei~~~~~~~~----~----~~~~~~~----~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 138 (148)
T smart00382 78 KPDVLILDEITSLLDAEQ----E----ALLLLLE----E------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF 138 (148)
T ss_pred CCCEEEEECCcccCCHHH----H----HHHHhhh----h------hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence 789999999998764322 0 0000000 0 00000113346678999999734444444444 77
Q ss_pred eEEEeC
Q 019694 164 EKFYWA 169 (337)
Q Consensus 164 d~~i~~ 169 (337)
+..+.+
T Consensus 139 ~~~~~~ 144 (148)
T smart00382 139 DRRIVL 144 (148)
T ss_pred ceEEEe
Confidence 777665
No 103
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=7.8e-11 Score=115.87 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=86.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCcccc----------CCCC----ChHHHHHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAG----EPAKLIRQRYREAADII 80 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~----------~~~G----e~~~~ir~~f~~A~~~~ 80 (337)
.|..++||||||||||++++.+++++ ++.++.+++....+ ...+ .......+.+....+.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999887 56788887764321 1111 00011223333333333
Q ss_pred H-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcch
Q 019694 81 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAP 156 (337)
Q Consensus 81 ~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~a 156 (337)
+ ...+.||+|||+|.+..+.+ ...+ ..|+.+++ .....++.+|+++|..+ .+++.
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~--------~~~l-~~l~~~~~------------~~~~~~v~vI~i~~~~~~~~~l~~~ 192 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEG--------NDVL-YSLLRAHE------------EYPGARIGVIGISSDLTFLYILDPR 192 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCC--------chHH-HHHHHhhh------------ccCCCeEEEEEEECCcchhhhcCHH
Confidence 4 45678999999998872221 0122 22323322 11233788999999875 45666
Q ss_pred hccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694 157 LIRDGRMEKFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 157 LlR~gR~d~~i~~--P~~~~R~~Il~~~~~ 184 (337)
+..+.+. ..+.+ ++.++..+|++..+.
T Consensus 193 ~~s~~~~-~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 193 VKSVFRP-EEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHhcCCc-ceeecCCCCHHHHHHHHHHHHH
Confidence 5442222 33445 788999999887764
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=121.80 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccCC----------------CC-ChHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------------AG-EPAKLIRQR 72 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~~----------------~G-e~~~~ir~~ 72 (337)
+...++|+|+||||||+.++.|.+++ .+.++.+++..+...+ .| .....+..+
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerL 859 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRL 859 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 33456799999999999999998776 2456788885533221 01 112233344
Q ss_pred HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC---
Q 019694 73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--- 149 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~--- 149 (337)
|.... -......||+|||||.+..+. +..|.++++- ......++.||+++|.
T Consensus 860 F~~L~--k~~r~v~IIILDEID~L~kK~-------------QDVLYnLFR~----------~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 860 FNQNK--KDNRNVSILIIDEIDYLITKT-------------QKVLFTLFDW----------PTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred Hhhhh--cccccceEEEeehHhhhCccH-------------HHHHHHHHHH----------hhccCCeEEEEEecCchhc
Confidence 44320 013346799999999886431 1234444441 1123467899999997
Q ss_pred CCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccC
Q 019694 150 FSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRN 185 (337)
Q Consensus 150 ~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~ 185 (337)
++.|++.+..+....++.+- ++.+++.+|++..+..
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 44566777654444333333 8999999998877753
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.26 E-value=7.4e-11 Score=124.40 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=94.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccccccC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRM 100 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l~~~~ 100 (337)
..++||||||||||++|+++|+.++.+++.+++.. ...+.+++.+..+.+.+. .....+|||||||.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-------~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~- 124 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-------AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA- 124 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-------hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence 36899999999999999999999999998887652 112334556666533333 346789999999875321
Q ss_pred CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe--CCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694 101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 176 (337)
Q Consensus 101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT--N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~ 176 (337)
....|+..++ ...+.+|++| |....++++++.+++ .+.+ ++.+++.
T Consensus 125 ------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~SR~~---v~~l~pLs~edi~ 174 (725)
T PRK13341 125 ------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVSRSR---LFRLKSLSDEDLH 174 (725)
T ss_pred ------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhcccc---ceecCCCCHHHHH
Confidence 1223333333 2346666655 333568899886443 3555 8889999
Q ss_pred HHHHHhcc-------C--CCCCHHHHHHHhcCCCc
Q 019694 177 GVCKGIFR-------N--DNVADDDIVKLVDTFPG 202 (337)
Q Consensus 177 ~Il~~~~~-------~--~~l~~~~la~l~~gf~g 202 (337)
.|++.++. . ..++.+.+..++...+|
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 99888775 2 24566667766665544
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=1.7e-10 Score=123.96 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCCcE-EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 019694 19 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 19 ~~p~g-iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
..|.| +||+||||+|||.+|+++|+.+ ...++.++++++.+. |+|..+. ..+..+ +++
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~~---v~~ 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTEA---VRR 666 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHHH---HHh
Confidence 34666 7999999999999999999998 456788888776322 3432210 122222 356
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
...+||+|||||+.-. .+...|++++|+-.... +.-......+.+||+|||..
T Consensus 667 ~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d--~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMED--GEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred CCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeec--CCCcEEeccccEEEEeCCCc
Confidence 6789999999986421 34456777877432111 11112345788999999963
No 107
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.8e-11 Score=117.99 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=101.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc-ccCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l-~~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~ 99 (337)
..|||.||.|+|||+||+.+|+-+++||...++..| ..+|+|+. +..|..++..|.-.+.+.+..||||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 468999999999999999999999999999999998 57899986 4566777877755556778899999999999844
Q ss_pred CCC-CcccchhhHhHHHHHHhhhCCCccccCCCccc-cCCCCCceEEEEeC-------CCCCCcchhccCCCce-EEEeC
Q 019694 100 MGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGN-------DFSTLYAPLIRDGRME-KFYWA 169 (337)
Q Consensus 100 ~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-~~~~~~V~vI~TTN-------~~~~ld~aLlR~gR~d-~~i~~ 169 (337)
..+ +....+...-+++.|+.++.. +.|.+++... ...+...+.|=||| -+..||.-+-| |++ +.+-+
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG-tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG-TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc-cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence 332 233567778899999999983 3444433211 11223333333333 34557776666 444 33334
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=4.5e-11 Score=121.73 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=97.5
Q ss_pred HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCC
Q 019694 7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNA 62 (337)
Q Consensus 7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~ 62 (337)
..+++++.. -+.|..+||+||||||||++|+++|+.++.. ++.++++.
T Consensus 26 ~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------ 97 (509)
T PRK14958 26 RALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------ 97 (509)
T ss_pred HHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------
Confidence 344555543 3568899999999999999999999998653 23333221
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694 63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 142 (337)
Q Consensus 63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~ 142 (337)
......+|++.+.+.-.-..++..|+||||+|.+... .. +.|+..++ +....+.
T Consensus 98 ~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------a~-naLLk~LE-------------epp~~~~ 151 (509)
T PRK14958 98 RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------SF-NALLKTLE-------------EPPSHVK 151 (509)
T ss_pred cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH------------HH-HHHHHHHh-------------ccCCCeE
Confidence 1223345555554411112455679999999976421 12 23444444 3445678
Q ss_pred EEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHhcC
Q 019694 143 IIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVDT 199 (337)
Q Consensus 143 vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~~g 199 (337)
+|++|++++.+.+.++. |+-.+-.- ++.++....++.++...++. .+.+..++..
T Consensus 152 fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 152 FILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred EEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888999999999775 54333222 67777777777777666554 4444444433
No 109
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.4e-10 Score=118.08 Aligned_cols=137 Identities=12% Similarity=0.188 Sum_probs=89.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
-+.|..+|||||||||||++|+++|+.+... ++.++.+ .......+|++..
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~ 106 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLRE 106 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc------ccCCHHHHHHHHH
Confidence 3578889999999999999999999988531 2233322 1122345566544
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...--...+.||||||+|.+.. ...+ .|+..++ .....+.+|++||.++.++
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~ls~------------~a~n-aLLk~LE-------------ep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHMMSK------------SAFN-ALLKTLE-------------EPPEHVIFILATTEPEKMP 160 (504)
T ss_pred HHhhccccCCCeEEEEECccccCH------------HHHH-HHHHHHH-------------hCCCCEEEEEEcCChhhCC
Confidence 442211245678999999986421 1122 2333333 2345677888889999999
Q ss_pred chhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694 155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~ 189 (337)
+++.. |+.. +.+ |+.++..++++.++...++.
T Consensus 161 ~~I~S--Rc~~-~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 161 PTILS--RTQH-FRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred hHHhc--ceEE-EEecCCCHHHHHHHHHHHHHHcCCC
Confidence 99876 5544 444 89999999988888766653
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.23 E-value=1.1e-10 Score=103.65 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=90.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|..+|||||||+|||++|+.+++.+... +..+... ... -....++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 678899999999999999999999987432 1111111 001 11234555555
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...-..+...||+|||+|.+... . ...|+..++ .......+|++||+++.++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~------------~-~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA------------A-ANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5522212456789999999876321 1 123444444 2334567888888889999
Q ss_pred chhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHHHHHhc
Q 019694 155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVD 198 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~la~l~~ 198 (337)
+++.. |+. .+.+ |+.++..+++... +++.+.+..+..
T Consensus 141 ~~i~s--r~~-~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~ 179 (188)
T TIGR00678 141 PTIRS--RCQ-VLPFPPLSEEALLQWLIRQ----GISEEAAELLLA 179 (188)
T ss_pred HHHHh--hcE-EeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 99987 443 4555 8899998888776 466554444333
No 111
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=1.2e-10 Score=119.92 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=95.2
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCCCC
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAG 63 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~~G 63 (337)
.+++.+.. -+.+..+||+||+|||||++|+.+|+.+.. .++.++++ .+
T Consensus 27 ~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa------s~ 98 (559)
T PRK05563 27 TLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA------SN 98 (559)
T ss_pred HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc------cc
Confidence 34444443 356889999999999999999999998753 22333322 12
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694 64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 143 (337)
Q Consensus 64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v 143 (337)
.+...+|++...+...-..+...|++|||+|.+... .. ..|+..++ ++...+.+
T Consensus 99 ~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~------------a~-naLLKtLE-------------epp~~~if 152 (559)
T PRK05563 99 NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG------------AF-NALLKTLE-------------EPPAHVIF 152 (559)
T ss_pred CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH------------HH-HHHHHHhc-------------CCCCCeEE
Confidence 334556777666522112456789999999976321 12 23334444 33456778
Q ss_pred EEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC
Q 019694 144 IVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV 188 (337)
Q Consensus 144 I~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l 188 (337)
|++|+.++.|++.++. |+.++-.- |+.++...+++.++...++
T Consensus 153 Ilatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 153 ILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred EEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 8888889999999875 55443333 8888988888888876654
No 112
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.23 E-value=9.8e-11 Score=120.03 Aligned_cols=161 Identities=15% Similarity=0.156 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCcc-------ccCCCCChHHHH---HHHHHHH--
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEPAKLI---RQRYREA-- 76 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l-------~~~~~Ge~~~~i---r~~f~~A-- 76 (337)
+.|..+||+||||||||++|+++.+.+ +.+|+.++++.. .+...|.....+ ...|..+
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 346789999999999999999997653 357888887632 111111100000 0011100
Q ss_pred ----HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc----------------C
Q 019694 77 ----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----------------E 136 (337)
Q Consensus 77 ----~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~----------------~ 136 (337)
.+.+......+|||||||.+.. ..+..|+.++++....-..+.+.. .
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~-------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHP-------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCH-------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence 0111233568999999997642 123344444442111100011110 1
Q ss_pred CCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC--CHHHHH
Q 019694 137 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIV 194 (337)
Q Consensus 137 ~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l--~~~~la 194 (337)
+..-.+|++|||+++.|++++++ |+..+... ++.+++.+|++..++..++ +.+.+.
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~ 289 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALE 289 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 11223566778889999999987 67654444 7889999999988876654 444444
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.5e-10 Score=118.34 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=91.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|..+||+||||+|||++|+.+|+.+... ++.+++. ... ....++++.+
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa----s~~--gvd~ir~ii~ 109 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA----SRT--GVEETKEILD 109 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc----ccc--CHHHHHHHHH
Confidence 678889999999999999999999988641 2222211 111 1234455655
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...-..+...|+||||+|.+... ....|+..++ +....+.+|++|++++.+.
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK~LE-------------epp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLKTLE-------------EPPEYVKFILATTDYHKIP 163 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHHHHh-------------cCCCCceEEEEECChhhhh
Confidence 5532223556789999999875321 1234444544 3345677888888899999
Q ss_pred chhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC--CHHHHHHHh
Q 019694 155 APLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIVKLV 197 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l--~~~~la~l~ 197 (337)
++++. |+..+-.- ++.++....++..+...++ +...+..++
T Consensus 164 ~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia 207 (546)
T PRK14957 164 VTILS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA 207 (546)
T ss_pred hhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88765 55433333 7888888888887766554 344344333
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.5e-10 Score=113.28 Aligned_cols=151 Identities=14% Similarity=0.165 Sum_probs=93.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC-------ccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-------ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 91 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s-------~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID 91 (337)
+.|..+|||||||+|||++|+++|+.+.......... ++ +.........++.++..+...-..+.+.||+||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviID 115 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIID 115 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence 5688999999999999999999999876421110000 01 111112234566667665211113456799999
Q ss_pred ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--
Q 019694 92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-- 169 (337)
Q Consensus 92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-- 169 (337)
|+|.+... .. ..|+..++ .......+|++||..+.+.+++.++++ .+.+
T Consensus 116 E~~~l~~~------------~~-~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~sr~~---~v~~~~ 166 (367)
T PRK14970 116 EVHMLSSA------------AF-NAFLKTLE-------------EPPAHAIFILATTEKHKIIPTILSRCQ---IFDFKR 166 (367)
T ss_pred ChhhcCHH------------HH-HHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHHhcce---eEecCC
Confidence 99865321 12 23333344 223345677778888999999886444 3455
Q ss_pred CCHHHHHHHHHHhccCCC--CCHHHHHHHhcC
Q 019694 170 PTREDRIGVCKGIFRNDN--VADDDIVKLVDT 199 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~~~--l~~~~la~l~~g 199 (337)
|+.++...++...+...+ ++.+.+..++..
T Consensus 167 ~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~ 198 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK 198 (367)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 788888888888777665 455555555544
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.22 E-value=1.1e-10 Score=112.98 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=94.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 73 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f 73 (337)
-+.|..+|||||||+|||++|+++|+.+... ++.++++ .......+++++
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ 106 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------SNNGVDDIREIL 106 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHH
Confidence 3567889999999999999999999987532 2222221 112233466677
Q ss_pred HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 153 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l 153 (337)
..+...-..+...||+|||+|.+... ..+ .|+..++ .....+.+|++||+++.+
T Consensus 107 ~~~~~~p~~~~~~vviidea~~l~~~------------~~~-~Ll~~le-------------~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 107 DNVKYAPSSGKYKVYIIDEVHMLSKS------------AFN-ALLKTLE-------------EPPEHVVFILATTEPHKI 160 (355)
T ss_pred HHHhcCcccCCceEEEEeChhhcCHH------------HHH-HHHHHHh-------------CCccceeEEEEeCCHHHH
Confidence 66521111345579999999876321 122 2333334 233567788888999988
Q ss_pred cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCC
Q 019694 154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTF 200 (337)
Q Consensus 154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf 200 (337)
.+++.. |+.. +.+ |+.++..++++.+++..+ ++.+.+..+++..
T Consensus 161 ~~~l~s--r~~~-~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~ 208 (355)
T TIGR02397 161 PATILS--RCQR-FDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA 208 (355)
T ss_pred HHHHHh--heeE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 888876 5544 444 889999999988887665 5555554444433
No 116
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=8.6e-11 Score=113.46 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=89.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC--CCCChHHHHH----HHHHHHHH-HHHhcCceEEEeccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLIR----QRYREAAD-IIKKGKMCCLMINDL 93 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~--~~Ge~~~~ir----~~f~~A~~-~~~~~~p~Il~IDEi 93 (337)
-+.+||.||||||||++|+++|+.++.+|+.+.+...... ..|...-..+ ..|..-.. +..... +|+|+|||
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEI 121 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEI 121 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEecc
Confidence 4569999999999999999999999999999988754322 2233211110 00000000 000111 59999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-----CCCCCcchhccCCCceEEEe
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-----~~~~ld~aLlR~gR~d~~i~ 168 (337)
+.... .+...|+..++. ..+.+++..........+||+|+| ....+++|+++ ||...++
T Consensus 122 nra~p-------------~~q~aLl~~l~e-~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 122 NRAPP-------------EVQNALLEALEE-RQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred ccCCH-------------HHHHHHHHHHhC-cEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 86321 445566666662 123333332122346678888889 77889999997 8877778
Q ss_pred C--C-CHHHHHHHHHHhc
Q 019694 169 A--P-TREDRIGVCKGIF 183 (337)
Q Consensus 169 ~--P-~~~~R~~Il~~~~ 183 (337)
+ | ..++...++....
T Consensus 186 v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 186 VDYPDSEEEERIILARVG 203 (329)
T ss_pred cCCCCchHHHHHHHHhCc
Confidence 7 7 4555555544444
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.4e-10 Score=115.89 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=93.1
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------------------------cEEecCCcccc
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELES 59 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--------------------------~i~vs~s~l~~ 59 (337)
...+++++.. -+.|..+||+||+|||||++|+++|+.+... ++.++++.
T Consensus 22 ~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas--- 96 (584)
T PRK14952 22 TEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS--- 96 (584)
T ss_pred HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccc---
Confidence 3344555543 3678899999999999999999999987642 11222110
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCC
Q 019694 60 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 139 (337)
Q Consensus 60 ~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~ 139 (337)
..+...+|++-..+...-..+...|+||||+|.+... . ...|+..+. +...
T Consensus 97 ---~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~------------A-~NALLK~LE-------------Epp~ 147 (584)
T PRK14952 97 ---HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA------------G-FNALLKIVE-------------EPPE 147 (584)
T ss_pred ---ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH------------H-HHHHHHHHh-------------cCCC
Confidence 0123345554444411112456679999999876321 1 223444444 4456
Q ss_pred CceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694 140 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 188 (337)
Q Consensus 140 ~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l 188 (337)
.+.+|++|+.++.|.++++. |+-. +.+ ++.++..+++..++...++
T Consensus 148 ~~~fIL~tte~~kll~TI~S--Rc~~-~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 148 HLIFIFATTEPEKVLPTIRS--RTHH-YPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CeEEEEEeCChHhhHHHHHH--hceE-EEeeCCCHHHHHHHHHHHHHHcCC
Confidence 77888888999999999875 4433 333 7788888888888776654
No 118
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.2e-10 Score=115.75 Aligned_cols=158 Identities=15% Similarity=0.272 Sum_probs=101.3
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCC
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGN 61 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~ 61 (337)
+..+++.+.. -+.|..+||+||||+|||++|+.+|+.+.. .++.+++++
T Consensus 22 v~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas----- 94 (491)
T PRK14964 22 VRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS----- 94 (491)
T ss_pred HHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-----
Confidence 3344444443 366899999999999999999999997642 234444431
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCc
Q 019694 62 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 141 (337)
Q Consensus 62 ~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V 141 (337)
..+...+|++.+.+...--.+...|++|||+|.+.. ... ..|+..++ ++.+.+
T Consensus 95 -~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~-NaLLK~LE-------------ePp~~v 147 (491)
T PRK14964 95 -NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAF-NALLKTLE-------------EPAPHV 147 (491)
T ss_pred -CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHH-HHHHHHHh-------------CCCCCe
Confidence 123345666666652221245678999999986632 112 23444444 344667
Q ss_pred eEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhcCC
Q 019694 142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTF 200 (337)
Q Consensus 142 ~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~gf 200 (337)
.+|++|+.++.|++.++. |+-. +.+ ++.++..+++..++...++ +.+.+..++...
T Consensus 148 ~fIlatte~~Kl~~tI~S--Rc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 148 KFILATTEVKKIPVTIIS--RCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred EEEEEeCChHHHHHHHHH--hhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 888888999999999876 4444 344 7888888888888876654 444444444433
No 119
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.20 E-value=1.2e-10 Score=106.18 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=91.8
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
...++++.. +...+..++|+||||||||+||+++++++ +.+++.+++.++.. .+. ..
T Consensus 29 ~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~~------~~ 88 (227)
T PRK08903 29 VARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AFD------FD 88 (227)
T ss_pred HHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HHh------hc
Confidence 344444443 34556789999999999999999999875 56777777764321 111 12
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcchhcc
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIR 159 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~aLlR 159 (337)
....+|+|||+|.+... . ...|..+++ .. ......++|.|++.+. .+.+.|..
T Consensus 89 ~~~~~liiDdi~~l~~~----~---------~~~L~~~~~--------~~---~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 89 PEAELYAVDDVERLDDA----Q---------QIALFNLFN--------RV---RAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred ccCCEEEEeChhhcCch----H---------HHHHHHHHH--------HH---HHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 34679999999975321 1 112223332 11 1123334555555432 23455553
Q ss_pred CCCc--eEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhH
Q 019694 160 DGRM--EKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 160 ~gR~--d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~ 206 (337)
|+ ...+.+ |+.+++..++..+.... .++.+.+..+...++|.-.+
T Consensus 145 --r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 145 --RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred --HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 44 356666 77777888887766544 55667777777766664433
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.9e-10 Score=119.14 Aligned_cols=159 Identities=13% Similarity=0.185 Sum_probs=98.9
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------cEEecCC
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAG 55 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------------~i~vs~s 55 (337)
++..+++++.. -+.|..+|||||+|||||++|+++|+.+... ++.++++
T Consensus 24 vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa 101 (618)
T PRK14951 24 VVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA 101 (618)
T ss_pred HHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc
Confidence 34455555553 3668899999999999999999999998652 1122111
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc
Q 019694 56 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 135 (337)
Q Consensus 56 ~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~ 135 (337)
.......+|++.+.+...-..++-.|++|||+|.+... ..+ .|+..++
T Consensus 102 ------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a~N-aLLKtLE------------- 149 (618)
T PRK14951 102 ------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------AFN-AMLKTLE------------- 149 (618)
T ss_pred ------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------HHH-HHHHhcc-------------
Confidence 01122345665555411111344579999999976421 122 2333333
Q ss_pred CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC--HHHHHHHhcCC
Q 019694 136 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTF 200 (337)
Q Consensus 136 ~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~--~~~la~l~~gf 200 (337)
+....+.+|++|++++.+.+.++. |+.. +.+ ++.++..+.++.++...++. .+.+..++...
T Consensus 150 EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~-~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 150 EPPEYLKFVLATTDPQKVPVTVLS--RCLQ-FNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred cCCCCeEEEEEECCchhhhHHHHH--hcee-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 345667788888899999988775 5543 444 78888888888888766554 44444444433
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=99.19 E-value=1.4e-10 Score=106.94 Aligned_cols=160 Identities=13% Similarity=0.206 Sum_probs=92.7
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 81 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~ 81 (337)
+.+.++++....+-.....++||||+|+|||+|++++++++ +..++.++..++... . ....+.. +
T Consensus 29 a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----~----~~~~~~~----~ 96 (234)
T PRK05642 29 ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----G----PELLDNL----E 96 (234)
T ss_pred HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----h----HHHHHhh----h
Confidence 34445544332222234678999999999999999998764 567777777665432 1 1111111 2
Q ss_pred hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCCCC---cchh
Q 019694 82 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTL---YAPL 157 (337)
Q Consensus 82 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~~l---d~aL 157 (337)
...+|+|||++.+.++.. ....|..+++ .. ...++ .+|+|++ .|..+ .+.|
T Consensus 97 --~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n--------~~---~~~g~-~ilits~~~p~~l~~~~~~L 151 (234)
T PRK05642 97 --QYELVCLDDLDVIAGKAD-----------WEEALFHLFN--------RL---RDSGR-RLLLAASKSPRELPIKLPDL 151 (234)
T ss_pred --hCCEEEEechhhhcCChH-----------HHHHHHHHHH--------HH---HhcCC-EEEEeCCCCHHHcCccCccH
Confidence 225899999997654321 0122333333 11 11223 4555555 44433 5667
Q ss_pred ccCCCc--eEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCch
Q 019694 158 IRDGRM--EKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 203 (337)
Q Consensus 158 lR~gR~--d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~ga 203 (337)
.. |+ -..+.+ |+.++|.+|++...... .++.+.+..++..+.+.
T Consensus 152 ~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 152 KS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 65 55 345555 89999999988554433 55667777777666653
No 122
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.19 E-value=3.5e-10 Score=104.27 Aligned_cols=144 Identities=14% Similarity=0.182 Sum_probs=85.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
..++||||||||||+|++++++++. ..+..++...... ...+..+.. . +-.+|+||||+.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~----~--~~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGM----E--QLSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHh----h--hCCEEEEeChhhhcC
Confidence 4799999999999999999998764 3344444432111 011111111 1 125899999997643
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---CcchhccCCCce--EEEeC--C
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--P 170 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~aLlR~gR~d--~~i~~--P 170 (337)
... ..+.+...+..+. +.+++.+|+||+. |.. +.+.|.. |+. ..+.+ |
T Consensus 112 ~~~-------~~~~lf~l~n~~~---------------e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 DEL-------WEMAIFDLYNRIL---------------ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred CHH-------HHHHHHHHHHHHH---------------HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 221 1112222221111 1233445666654 444 5678875 664 55666 8
Q ss_pred CHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCch
Q 019694 171 TREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 203 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~ga 203 (337)
+.+++.++++...... .++++.+.-++..+.+.
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 9999999998765544 56667777777777664
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.1e-10 Score=117.15 Aligned_cols=153 Identities=8% Similarity=0.100 Sum_probs=95.2
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCC
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 61 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~ 61 (337)
...+++++... +.+..+||+||||||||++|+.+|+.+... ++.+++..
T Consensus 25 ~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~----- 97 (624)
T PRK14959 25 KAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS----- 97 (624)
T ss_pred HHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----
Confidence 34445555432 556799999999999999999999998753 22232210
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCc
Q 019694 62 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 141 (337)
Q Consensus 62 ~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V 141 (337)
......++.+-+.+...-..+...||||||+|.+... . ...|+..++ +....+
T Consensus 98 -~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~------------a-~naLLk~LE-------------EP~~~~ 150 (624)
T PRK14959 98 -NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE------------A-FNALLKTLE-------------EPPARV 150 (624)
T ss_pred -ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH------------H-HHHHHHHhh-------------ccCCCE
Confidence 1112234443333211112456689999999976311 1 233444444 334568
Q ss_pred eEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHH
Q 019694 142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVK 195 (337)
Q Consensus 142 ~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~ 195 (337)
.+|++||.++.+.+.++. |+.. +.+ ++.++...+++.++...+ ++.+.+..
T Consensus 151 ifILaTt~~~kll~TI~S--Rcq~-i~F~pLs~~eL~~~L~~il~~egi~id~eal~l 205 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVS--RCQH-FTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRL 205 (624)
T ss_pred EEEEecCChhhhhHHHHh--hhhc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 889999999999988775 5433 444 788888888888776655 45544433
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.5e-10 Score=118.50 Aligned_cols=137 Identities=13% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc------------------------EEecCCccccCCCCChHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQRY 73 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~------------------------i~vs~s~l~~~~~Ge~~~~ir~~f 73 (337)
-+.+..+||+||||+|||++|+.+|+.+.... +.++++ .......+|++.
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~ 108 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA------SNTQVDAMRELL 108 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc------ccCCHHHHHHHH
Confidence 46788999999999999999999999986531 111111 011234466666
Q ss_pred HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 153 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l 153 (337)
..+...-..+...|+||||+|.+... ..+ .|+..++ +....+.+|++|++++.+
T Consensus 109 ~~~~~~p~~~~~kVvIIDEad~ls~~------------a~n-aLLK~LE-------------epp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 109 DNAQYAPTRGRFKVYIIDEVHMLSKS------------AFN-AMLKTLE-------------EPPEHVKFILATTDPQKI 162 (527)
T ss_pred HHHhhCcccCCceEEEEcCcccCCHH------------HHH-HHHHHHh-------------CCCCCEEEEEEeCChhhC
Confidence 65521111455679999999976321 122 3334444 344667888888999999
Q ss_pred cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694 154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~ 189 (337)
.+.++. |+-. +.+ |+.++..+.+..++...++.
T Consensus 163 l~tI~S--Rc~~-~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 163 PVTVLS--RCLQ-FNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred chhHHH--HHHH-HhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 988764 5433 344 88888888888887666553
No 125
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=2.3e-10 Score=117.62 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=93.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCCCCChHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQR 72 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~~Ge~~~~ir~~ 72 (337)
+-+.|.++||+||||+|||++|+++|+.+.. .++.++++. ......+|.+
T Consensus 34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReI 107 (605)
T PRK05896 34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNI 107 (605)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHH
Confidence 3467899999999999999999999998753 112222210 1122345666
Q ss_pred HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694 73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 152 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ 152 (337)
...+...--.+...|++|||+|.+... ....|+..++ ++...+.+|++|+.++.
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHh
Confidence 555421111344579999999976311 1234545555 34456788888889999
Q ss_pred CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHH
Q 019694 153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKL 196 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l 196 (337)
|.+++++ |+.. +.+ |+.++...+++..+...+ ++.+.+..+
T Consensus 162 Ll~TI~S--Rcq~-ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 162 IPLTIIS--RCQR-YNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred hhHHHHh--hhhh-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999886 4443 444 888888888888776654 555544443
No 126
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.5e-10 Score=118.10 Aligned_cols=146 Identities=12% Similarity=0.195 Sum_probs=93.0
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCC
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAG 63 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~G 63 (337)
.+++++.. -+.|..+|||||||+|||++|+++|+.+... ++.+++. ..
T Consensus 27 ~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~------s~ 98 (576)
T PRK14965 27 TLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA------SN 98 (576)
T ss_pred HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc------Cc
Confidence 34444433 3678999999999999999999999998642 1222211 11
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694 64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 143 (337)
Q Consensus 64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v 143 (337)
.....++++...+...-......|++|||+|.+... . ...|+..++ ++...+.+
T Consensus 99 ~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~------------a-~naLLk~LE-------------epp~~~~f 152 (576)
T PRK14965 99 TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN------------A-FNALLKTLE-------------EPPPHVKF 152 (576)
T ss_pred cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH------------H-HHHHHHHHH-------------cCCCCeEE
Confidence 223456666655511111345579999999876321 1 234444555 44567888
Q ss_pred EEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC
Q 019694 144 IVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 144 I~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~ 189 (337)
|++||.++.|++.++. |+..+-+- ++.++....+..+++..++.
T Consensus 153 Il~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 153 IFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred EEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 8999999999999875 44332222 77888888887777666543
No 127
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.16 E-value=4.6e-10 Score=120.89 Aligned_cols=141 Identities=15% Similarity=0.207 Sum_probs=87.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCceEEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~Il~I 90 (337)
.+||+||||||||++|+++|+.+ +.+++.++++++... .+|.+...+ ...+..+ ++....+||||
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~---v~~~p~~vLll 676 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEA---VRRRPYSVILL 676 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHH---HHhCCCCeEEE
Confidence 58999999999999999999987 456888888766332 112110000 0112222 23444589999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------------
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS------------------- 151 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~------------------- 151 (337)
||+|++- ..+...|++++++.... ++.-......+.+||+|||...
T Consensus 677 DEieka~-------------~~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~ 741 (857)
T PRK10865 677 DEVEKAH-------------PDVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELV 741 (857)
T ss_pred eehhhCC-------------HHHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHH
Confidence 9998642 13456677777632211 1111123345678999999731
Q ss_pred ------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 152 ------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 152 ------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
.+.|+|+. |+|.++.+ ++.++...|++.++
T Consensus 742 ~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 742 LGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred HHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 24467774 89877776 77888778766555
No 128
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=1.3e-10 Score=115.52 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=76.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC-------cEEec----CCccccCCC--CChHHHHHHHHHHHHHHHHh--cC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMS----AGELESGNA--GEPAKLIRQRYREAADIIKK--GK 84 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------~i~vs----~s~l~~~~~--Ge~~~~ir~~f~~A~~~~~~--~~ 84 (337)
..+.++|+||||||||++|+.+|..+... .+.++ ..++..++. +..-......|.++...++. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 35789999999999999999999988532 12222 112222221 11111112344433333342 46
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc---cccCCCccc------cCCCCCceEEEEeCCCC----
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---CVQLPGMYN------KEENPRVPIIVTGNDFS---- 151 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~---~~~~~g~~~------~~~~~~V~vI~TTN~~~---- 151 (337)
|++|||||||..-.. .+.+.++.++++.. ...++-.+. -....++.||+|+|..+
T Consensus 273 ~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 273 KYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred CcEEEEehhhccCHH------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 899999999864311 11122233333210 001110000 12357899999999988
Q ss_pred CCcchhccCCCceEEEeC-CCH
Q 019694 152 TLYAPLIRDGRMEKFYWA-PTR 172 (337)
Q Consensus 152 ~ld~aLlR~gR~d~~i~~-P~~ 172 (337)
.+|.||+| ||.. +.+ |+.
T Consensus 341 ~lD~AlrR--RF~f-i~i~p~~ 359 (459)
T PRK11331 341 VVDYALRR--RFSF-IDIEPGF 359 (459)
T ss_pred hccHHHHh--hhhe-EEecCCC
Confidence 89999999 5533 445 643
No 129
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4e-10 Score=118.13 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCc-EEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCce
Q 019694 20 VPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMC 86 (337)
Q Consensus 20 ~p~-giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~ 86 (337)
-|. ..||.||+|+|||.||+++|..+. -.++.+++|++..+ .+|.+..+| -..+.+| +++...|
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa---VRr~PyS 595 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA---VRRKPYS 595 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHh---hhcCCCe
Confidence 454 556799999999999999999997 78999999998543 333322221 1223333 3556679
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 149 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~ 149 (337)
||+||||++- +. -+...|++++|+-.... +.-......+.+||+|||-
T Consensus 596 ViLlDEIEKA--------Hp-----dV~nilLQVlDdGrLTD--~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 596 VILLDEIEKA--------HP-----DVFNLLLQVLDDGRLTD--GQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred EEEechhhhc--------CH-----HHHHHHHHHhcCCeeec--CCCCEEecceeEEEEeccc
Confidence 9999999862 22 45567888888432221 1112345678899999994
No 130
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.15 E-value=2.5e-10 Score=109.49 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=81.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAG 98 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l~~ 98 (337)
.++||||||||||+||+.|+....-+ |+.+++.. ...+-+|++|+.+..... ..+..|||||||..+-.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 46789999999999999999987665 77776652 234678999999954433 56789999999975421
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCC-CCcchhccCCCceEEEeC-CCHHHH
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFS-TLYAPLIRDGRMEKFYWA-PTREDR 175 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~-~ld~aLlR~gR~d~~i~~-P~~~~R 175 (337)
. .|. + +....+.+.|.+|++|. +|+ .|..||+.++| .++.- .+.++-
T Consensus 237 s----QQD---------~---------------fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~--VfvLekL~~n~v 286 (554)
T KOG2028|consen 237 S----QQD---------T---------------FLPHVENGDITLIGATTENPSFQLNAALLSRCR--VFVLEKLPVNAV 286 (554)
T ss_pred h----hhh---------c---------------ccceeccCceEEEecccCCCccchhHHHHhccc--eeEeccCCHHHH
Confidence 1 111 1 11124567788887653 343 68889997555 33222 566666
Q ss_pred HHHHHH
Q 019694 176 IGVCKG 181 (337)
Q Consensus 176 ~~Il~~ 181 (337)
..|+..
T Consensus 287 ~~iL~r 292 (554)
T KOG2028|consen 287 VTILMR 292 (554)
T ss_pred HHHHHH
Confidence 666554
No 131
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.15 E-value=2.8e-10 Score=122.32 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=70.4
Q ss_pred CCcE-EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH-----HHHHHHHHHHHHhcCc
Q 019694 20 VPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKM 85 (337)
Q Consensus 20 ~p~g-iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i-----r~~f~~A~~~~~~~~p 85 (337)
.|.+ +||+||||||||++|+++|+.+ +.+++.++.+++.+. .+|.+...+ ..+... ++....
T Consensus 537 ~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~----~~~~p~ 612 (821)
T CHL00095 537 RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEA----VRKKPY 612 (821)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHH----HHhCCC
Confidence 3544 7899999999999999999987 357888888776321 222211110 112222 244555
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
+||+|||+|+.-. .+...|+.+++......-.| ......+.++|+|||...
T Consensus 613 ~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g--~~v~~~~~i~I~Tsn~g~ 663 (821)
T CHL00095 613 TVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKG--RTIDFKNTLIIMTSNLGS 663 (821)
T ss_pred eEEEECChhhCCH-------------HHHHHHHHHhccCceecCCC--cEEecCceEEEEeCCcch
Confidence 8999999997521 34556777777432221111 123457889999999643
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.15 E-value=1.3e-09 Score=117.63 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCceE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCC 87 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~I 87 (337)
|...+||+||||||||++|+++|+.+ +.+++.++++++.+. .+|.+...+ ...+..+ ++....+|
T Consensus 594 p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~---v~~~p~~v 670 (852)
T TIGR03346 594 PIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA---VRRKPYSV 670 (852)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH---HHcCCCcE
Confidence 34568899999999999999999987 457888888775332 222211100 0112222 24455579
Q ss_pred EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC---------------
Q 019694 88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST--------------- 152 (337)
Q Consensus 88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~--------------- 152 (337)
|||||||++- ..+...|++++++.... ++.-......+.+||+|||....
T Consensus 671 lllDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~ 735 (852)
T TIGR03346 671 VLFDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMR 735 (852)
T ss_pred EEEeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHH
Confidence 9999999652 13456677777743211 11111233567899999997321
Q ss_pred ----------CcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 153 ----------LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 153 ----------ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
+.|.|+ +|+|.++.+ ++.++..+|+...+
T Consensus 736 ~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 736 EAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred HHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHH
Confidence 335566 489887777 78888888865554
No 133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=7e-10 Score=116.14 Aligned_cols=142 Identities=11% Similarity=0.196 Sum_probs=91.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe---cC----------Cccc--cCCCCChHHHHHHHHHHHHHHHHhc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA----------GELE--SGNAGEPAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v---s~----------s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~ 83 (337)
+.+.++||+||||+|||++|+++|+.+...--.. .+ .++. +.....+...||++.+.+...-..+
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 6788999999999999999999999876521000 00 0000 0000122344677766652222246
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
...|++|||+|.+... . ...|+..++ ++...+.+|++|+.++.|++.++. |+
T Consensus 118 ~~KV~IIDEa~~LT~~------------A-~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--Rc 169 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS------------A-FNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--RV 169 (725)
T ss_pred CCEEEEEEChhhCCHH------------H-HHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--hc
Confidence 6789999999976321 1 234444444 345667888888899999999876 55
Q ss_pred eEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~~~l~ 189 (337)
.+ +.+ |+.++..++++..+...++.
T Consensus 170 q~-ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 170 QR-FNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred ee-EEccCCCHHHHHHHHHHHHHHcCCC
Confidence 43 444 78899888888877666554
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=8.7e-10 Score=114.72 Aligned_cols=151 Identities=13% Similarity=0.202 Sum_probs=92.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----ecCC--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 78 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----vs~s--------------~l--~~~~~Ge~~~~ir~~f~~A~~ 78 (337)
+.+.++||+||||+|||++|+++|+.+...... ..++ ++ .+...+.....||++...+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 456789999999999999999999998753110 0000 01 011122334567777766621
Q ss_pred HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhc
Q 019694 79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 158 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLl 158 (337)
.-..+...|+||||+|.+.. ... ..|+..++ +....+++|++|++++.+.+.++
T Consensus 116 ~p~~~~~KViIIDEad~Lt~------------~a~-naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLST------------AAF-NALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCH------------HHH-HHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 11134567999999997632 112 23444444 34456788888889999999887
Q ss_pred cCCCceEEEeC-CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694 159 RDGRMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLV 197 (337)
Q Consensus 159 R~gR~d~~i~~-P~~~~R~~Il~~~~~~~~--l~~~~la~l~ 197 (337)
. |+..+.+- ++.++....+..++...+ ++.+.+..++
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La 209 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA 209 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 5 55444333 777777777766665543 4444443333
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=6.3e-10 Score=112.83 Aligned_cols=153 Identities=16% Similarity=0.240 Sum_probs=91.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------c------EEecCC---ccc--cCCCCChHHHHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------P------IMMSAG---ELE--SGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------~------i~vs~s---~l~--~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
-+.+..+|||||||+|||++|+.+|+.+... + ..+..+ ++. +.-.......+|.+...+...
T Consensus 35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~ 114 (486)
T PRK14953 35 QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYT 114 (486)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhC
Confidence 3567889999999999999999999987631 0 000010 010 000111223345554444111
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
-..+...|++|||+|.+... .. ..|+..++ .+...+++|++|+.++.+++++.+
T Consensus 115 P~~~~~KVvIIDEad~Lt~~------------a~-naLLk~LE-------------epp~~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLTKE------------AF-NALLKTLE-------------EPPPRTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred cccCCeeEEEEEChhhcCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEECCHHHHHHHHHH
Confidence 12456789999999976321 11 23333444 234456777777888889998876
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhccCCCCCH--HHHHHHhcC
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD--DDIVKLVDT 199 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~--~~la~l~~g 199 (337)
|+.. +.+ |+.++...++..+++..++.. +.+..+++.
T Consensus 169 --Rc~~-i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~ 209 (486)
T PRK14953 169 --RCQR-FIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA 209 (486)
T ss_pred --hceE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4443 444 889999999988887766543 544444443
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=4.9e-10 Score=112.67 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=105.3
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
+...++.+...+|. ....++|||++|+|||+|++++++++ +..++.+++.++...+...-... ...+... .
T Consensus 126 A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~-~~~~~~~--~ 201 (450)
T PRK14087 126 AFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKT-HKEIEQF--K 201 (450)
T ss_pred HHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHh-hhHHHHH--H
Confidence 33444555444443 23469999999999999999999965 45677788776654332211100 0111111 0
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----CCcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYA 155 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----~ld~ 155 (337)
-+-....+|+|||++.+.++.. ....+..++-.+.+ .+-.+|+|+|.+- .+++
T Consensus 202 ~~~~~~dvLiIDDiq~l~~k~~-------~~e~lf~l~N~~~~----------------~~k~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 202 NEICQNDVLIIDDVQFLSYKEK-------TNEIFFTIFNNFIE----------------NDKQLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHhccCCEEEEeccccccCCHH-------HHHHHHHHHHHHHH----------------cCCcEEEECCCCHHHHhhccH
Confidence 0124567999999997754321 11122222211111 1225788887642 3456
Q ss_pred hhccCCCce--EEEeC--CCHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhHHHHH
Q 019694 156 PLIRDGRME--KFYWA--PTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALR 212 (337)
Q Consensus 156 aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~~alr 212 (337)
.|.. ||. ..+.+ |+.++|.+|++..+...+ ++.+.+.-++..+.|..-...+++.
T Consensus 259 rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 259 RLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 6665 554 44445 999999999998887644 6667777777777775555555544
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.12 E-value=9.2e-10 Score=101.34 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=102.6
Q ss_pred chhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694 2 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAAD 78 (337)
Q Consensus 2 ~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~ 78 (337)
|+.-..+.+|......-.+...+||||++|||||++++++.++. |+.++.+...++.+ +-.++...
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l-- 101 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLL-- 101 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHH--
Confidence 44445566676664444578899999999999999999998865 67778877665432 23344333
Q ss_pred HHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694 79 IIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 157 (337)
Q Consensus 79 ~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL 157 (337)
+ ...+-|||+||+. +... ... -..|..+++ |. ......+|+|.+|+|+.+.++.-+
T Consensus 102 --~~~~~kFIlf~DDLs--Fe~~--d~~--------yk~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 102 --RDRPYKFILFCDDLS--FEEG--DTE--------YKALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred --hcCCCCEEEEecCCC--CCCC--cHH--------HHHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhh
Confidence 3 4567899999863 2111 111 134555556 43 234567999999999988776654
Q ss_pred cc-C--------------------CCceEEEeC--CCHHHHHHHHHHhccCCCCCH
Q 019694 158 IR-D--------------------GRMEKFYWA--PTREDRIGVCKGIFRNDNVAD 190 (337)
Q Consensus 158 lR-~--------------------gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~ 190 (337)
.- . .||-..+.+ |+.++=++|++.++...+++.
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 32 1 356666666 888888888888886555443
No 138
>PRK08727 hypothetical protein; Validated
Probab=99.12 E-value=1e-09 Score=101.12 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
...++||||+|||||+|++++++++ +...+.++..++. ..+...++. -.+..+|+|||++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIA 106 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCccccc
Confidence 3459999999999999999997764 4455555543321 112222222 2345699999999775
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCCC---cchhccCCCc--eEEEeC--
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTL---YAPLIRDGRM--EKFYWA-- 169 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~l---d~aLlR~gR~--d~~i~~-- 169 (337)
+... . ...+.++++ .. ...+..||+|+|. |..+ +++|.+ || -..+.+
T Consensus 107 ~~~~--~---------~~~lf~l~n--------~~----~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~ 161 (233)
T PRK08727 107 GQRE--D---------EVALFDFHN--------RA----RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPV 161 (233)
T ss_pred CChH--H---------HHHHHHHHH--------HH----HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecC
Confidence 4322 0 112223333 11 1124557777774 5544 678876 54 334555
Q ss_pred CCHHHHHHHHHHhccC--CCCCHHHHHHHhcCCCc
Q 019694 170 PTREDRIGVCKGIFRN--DNVADDDIVKLVDTFPG 202 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~--~~l~~~~la~l~~gf~g 202 (337)
|+.+++.+|++.+... ..++.+.+..+++.+.|
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 9999999999876643 46667777777777664
No 139
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.12 E-value=1.8e-09 Score=102.77 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=92.2
Q ss_pred HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH
Q 019694 7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 81 (337)
Q Consensus 7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~ 81 (337)
+.++.++..... | .++||||||||||++++++++++. ..++.++.++- .....++..+........
T Consensus 27 ~~l~~~i~~~~~--~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~------~~~~~~~~~i~~~~~~~~ 97 (319)
T PRK00440 27 ERLKSYVKEKNM--P-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE------RGIDVIRNKIKEFARTAP 97 (319)
T ss_pred HHHHHHHhCCCC--C-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc------cchHHHHHHHHHHHhcCC
Confidence 344455543322 2 479999999999999999999873 23444443321 111223333333211111
Q ss_pred --hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 82 --KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 82 --~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
...+.+|+|||+|.+... ....|..+++ .......+|+++|.+..+.+++.+
T Consensus 98 ~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 98 VGGAPFKIIFLDEADNLTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred CCCCCceEEEEeCcccCCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH
Confidence 134679999999876321 1123444444 122345678888888888888876
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcC
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDT 199 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~g 199 (337)
|+.. +.+ |+.++...+++.++...+ ++.+.+..++..
T Consensus 152 --r~~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~ 192 (319)
T PRK00440 152 --RCAV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV 192 (319)
T ss_pred --Hhhe-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4443 344 888998899888887665 455666655544
No 140
>PHA02244 ATPase-like protein
Probab=99.12 E-value=3.8e-10 Score=109.72 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---CCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
...|||+||||||||++|+++|+.++.+++.++...-.. +++..........|-+| .....+|+|||+|.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 445999999999999999999999999999887431111 11122112212233333 2356799999998643
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----------CCCcchhccCCCceEE
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF 166 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----------~~ld~aLlR~gR~d~~ 166 (337)
. .+...|..++++.. ....+.. .....+..+|+|+|.+ ..+++|++. ||-.
T Consensus 194 p-------------~vq~~L~~lLd~r~-l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~- 255 (383)
T PHA02244 194 P-------------EALIIINSAIANKF-FDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAP- 255 (383)
T ss_pred H-------------HHHHHHHHHhccCe-EEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEE-
Confidence 2 11223333333211 1111110 1134678999999973 678999986 7764
Q ss_pred EeC--CCHHHHHHHH
Q 019694 167 YWA--PTREDRIGVC 179 (337)
Q Consensus 167 i~~--P~~~~R~~Il 179 (337)
+++ |+ +....|.
T Consensus 256 I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 256 IEFDYDE-KIEHLIS 269 (383)
T ss_pred eeCCCCc-HHHHHHh
Confidence 455 66 3334444
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.11 E-value=2.3e-09 Score=111.64 Aligned_cols=166 Identities=15% Similarity=0.210 Sum_probs=94.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCcccc-------CCCCChHHHHHHHHHHHHH---
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES-------GNAGEPAKLIRQRYREAAD--- 78 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~-------~~~Ge~~~~ir~~f~~A~~--- 78 (337)
..|..++|+||||||||++|+++++.. +.+|+.+++..+.. .+.|.... ..+..+..
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~ 249 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLA 249 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHH
Confidence 346679999999999999999998755 35688888876521 11221100 11111111
Q ss_pred ----------HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc--------------
Q 019694 79 ----------IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-------------- 134 (337)
Q Consensus 79 ----------~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-------------- 134 (337)
.+......+|||||++.+-. .....|+.++++....-..+.|.
T Consensus 250 ~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~ 316 (615)
T TIGR02903 250 ETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLF 316 (615)
T ss_pred HcCCCchhcCchhhcCCCeEEEeccccCCH-------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhc
Confidence 11123467999999986532 12234444444322111111111
Q ss_pred -cCCCCCceEEE-EeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH-HHHHHHhcCCCc
Q 019694 135 -KEENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPG 202 (337)
Q Consensus 135 -~~~~~~V~vI~-TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~-~~la~l~~gf~g 202 (337)
......+++|+ ||++++.++++|+. ||..+... ++.++..+|++..+...++.. +++.++...|+.
T Consensus 317 ~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 317 EEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI 386 (615)
T ss_pred ccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC
Confidence 01122344444 66778899999875 78765544 788999999988877654322 334444444443
No 142
>PRK06620 hypothetical protein; Validated
Probab=99.10 E-value=6.6e-10 Score=101.20 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=87.1
Q ss_pred hHHHHHhhhhcCCCCCC-CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 019694 4 LVVHITKNFMSLPNIKV-PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~-p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
.+.+.++.+-...+..+ -..++||||||||||+|++++++..+..++ +.... ....+
T Consensus 26 ~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~--------- 83 (214)
T PRK06620 26 QAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL--------- 83 (214)
T ss_pred HHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH---------
Confidence 34455555544334332 167999999999999999999998875322 21100 00111
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC--CcchhccC
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST--LYAPLIRD 160 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~--ld~aLlR~ 160 (337)
....+|+|||||.+ . . . .|..+++ .. .+.++.++|.++..|.. + ++|+.
T Consensus 84 ~~~d~lliDdi~~~----~----~----~----~lf~l~N--------~~---~e~g~~ilits~~~p~~l~l-~~L~S- 134 (214)
T PRK06620 84 EKYNAFIIEDIENW----Q----E----P----ALLHIFN--------II---NEKQKYLLLTSSDKSRNFTL-PDLSS- 134 (214)
T ss_pred hcCCEEEEeccccc----h----H----H----HHHHHHH--------HH---HhcCCEEEEEcCCCccccch-HHHHH-
Confidence 13368999999832 1 0 1 2222222 01 12234455555555554 4 56654
Q ss_pred CCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchh
Q 019694 161 GRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQS 204 (337)
Q Consensus 161 gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gad 204 (337)
|+. ..+.+ |+.+.+..+++..+... .++.+.+.-++..+++.-
T Consensus 135 -Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 135 -RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred -HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Confidence 665 23444 99999999998887644 466677777777776543
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.2e-09 Score=109.95 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=91.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------cEEecCCccccCCCCChHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQR 72 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------------------~i~vs~s~l~~~~~Ge~~~~ir~~ 72 (337)
-+.|..+|||||||+|||++|+++|+.+... ++.+++.. . .+...++++
T Consensus 36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~----~--~gid~ir~i 109 (451)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS----H--RGIEDIRQI 109 (451)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc----c--CCHHHHHHH
Confidence 3678899999999999999999999987542 12222110 1 112334443
Q ss_pred HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694 73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 152 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ 152 (337)
-+...-.-......||||||+|.+... ....|+..++ .....+.+|++||.++.
T Consensus 110 ~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lE-------------ep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 110 NETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLE-------------EPPQHVKFFLATTEIHK 163 (451)
T ss_pred HHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhh-------------cCCCCceEEEEeCChHh
Confidence 332211112457789999999876321 1234445555 33456788888899999
Q ss_pred CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694 153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV 197 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~ 197 (337)
|.+++.. |+.. +.+ ++.++...++...++..+ ++.+.+..++
T Consensus 164 l~~tI~s--Rc~~-v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 164 IPGTILS--RCQK-MHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred cchHHHH--hceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999876 5544 444 888888888888776655 4444444443
No 144
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4e-10 Score=112.22 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=91.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChH--HHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA--KLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~--~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
...+-..+||+||||+|||.||-.+|...+.||+.+-..+-..++ .|++ ..|+..|+.| .+...+||++|+|+
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~-sEsaKc~~i~k~F~DA----YkS~lsiivvDdiE 608 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL-SESAKCAHIKKIFEDA----YKSPLSIIVVDDIE 608 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc-cHHHHHHHHHHHHHHh----hcCcceEEEEcchh
Confidence 344557899999999999999999999999999977555422221 1233 3688899999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch-hccCCCceEEEeCCCHH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTRE 173 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a-LlR~gR~d~~i~~P~~~ 173 (337)
.+..-.. -.... +-.+.|+|+-++.. . .....+.+|++||.+.+.|-.- ++- -|+..+.+|+..
T Consensus 609 rLiD~vp--IGPRf-SN~vlQaL~VllK~--------~--ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 609 RLLDYVP--IGPRF-SNLVLQALLVLLKK--------Q--PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLT 673 (744)
T ss_pred hhhcccc--cCchh-hHHHHHHHHHHhcc--------C--CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccC
Confidence 8762110 00111 12556777777661 1 1224577888888876633221 221 367778887654
Q ss_pred H
Q 019694 174 D 174 (337)
Q Consensus 174 ~ 174 (337)
.
T Consensus 674 ~ 674 (744)
T KOG0741|consen 674 T 674 (744)
T ss_pred c
Confidence 3
No 145
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-09 Score=102.12 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=65.0
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC----CCCCCcchhcc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIR 159 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR 159 (337)
+..||||||||+++.+.+ .....+..+-++.-|+-+....+... .|+......+++|++.- .|++|=|.|.
T Consensus 250 ~~GIvFIDEIDKIa~~~~-~g~~dvSREGVQRDlLPlvEGstV~T---KyG~VkTdHILFIasGAFh~sKPSDLiPELQ- 324 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGG-SGGPDVSREGVQRDLLPLVEGSTVST---KYGPVKTDHILFIASGAFHVAKPSDLIPELQ- 324 (444)
T ss_pred hcCeEEEehhhHHHhcCC-CCCCCcchhhhcccccccccCceeec---cccccccceEEEEecCceecCChhhcChhhc-
Confidence 468999999999997654 22235666777777777777443332 23446677888998754 6888888886
Q ss_pred CCCceEEEeC--CCHHHHHHHH
Q 019694 160 DGRMEKFYWA--PTREDRIGVC 179 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il 179 (337)
|||-..+++ .+.++-..|+
T Consensus 325 -GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 325 -GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred -CCCceEEEcccCCHHHHHHHH
Confidence 899999998 7888877774
No 146
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.8e-09 Score=103.08 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCC--ChHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAG--EPAKLIRQ 71 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~G--e~~~~ir~ 71 (337)
-+.|.++||+||+|+|||++|+++|+.+... ++.+.. ...+ -....||+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~-----~~~~~~i~id~iR~ 93 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP-----EEADKTIKVDQVRE 93 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec-----cCCCCCCCHHHHHH
Confidence 4678999999999999999999999987542 111111 0001 12345666
Q ss_pred HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 72 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 72 ~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
+-+.+...-..+...|++||++|++... .. ..|+..++ ++..++.+|.+|++++
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~------------aa-NaLLK~LE-------------EPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRN------------AA-NALLKSLE-------------EPSGDTVLLLISHQPS 147 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHH------------HH-HHHHHHHh-------------CCCCCeEEEEEECChh
Confidence 6555522223556779999999976321 22 23334444 4557789999999999
Q ss_pred CCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH---HHHHHHhcCCCchhhHh
Q 019694 152 TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 152 ~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~---~~la~l~~gf~gadl~~ 207 (337)
.|.|.++. |+-.+... |+.++-.+.+..... ..+. ..+..++.|-++..+++
T Consensus 148 ~ll~TI~S--Rc~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 148 RLLPTIKS--RCQQQACPLPSNEESLQWLQQALP--ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hCcHHHHh--hceeeeCCCcCHHHHHHHHHHhcc--cCChHHHHHHHHHcCCCHHHHHHH
Confidence 99999875 66553333 888888888776542 2233 34556666666655544
No 147
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.06 E-value=6.1e-10 Score=101.72 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=94.9
Q ss_pred hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChH-HHHHHHHHHH
Q 019694 3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPA-KLIRQRYREA 76 (337)
Q Consensus 3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~-~~ir~~f~~A 76 (337)
+.+.+.++.....++.. -..++||||+|+|||+|.+|+++++ +..++.+++.++...+..... ..+ ..|..
T Consensus 17 ~~a~~~~~~ia~~~~~~-~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~-~~~~~- 93 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGER-YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEI-EEFKD- 93 (219)
T ss_dssp HHHHHHHHHHHHSTTTS-SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSH-HHHHH-
T ss_pred HHHHHHHHHHHhcCCCC-CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccc-hhhhh-
Confidence 45566666666655542 2348999999999999999998874 456777777655432110000 000 11111
Q ss_pred HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCCC---
Q 019694 77 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFST--- 152 (337)
Q Consensus 77 ~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~~--- 152 (337)
+-....+|+|||++.+.++. .....|..+++ .. .. .+..+|+|++ .|..
T Consensus 94 ----~~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n--------~~---~~-~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 94 ----RLRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN--------RL---IE-SGKQLILTSDRPPSELSG 146 (219)
T ss_dssp ----HHCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH--------HH---HH-TTSEEEEEESS-TTTTTT
T ss_pred ----hhhcCCEEEEecchhhcCch-----------HHHHHHHHHHH--------HH---Hh-hCCeEEEEeCCCCccccc
Confidence 12356799999999875431 12233444444 11 11 2335666664 4454
Q ss_pred CcchhccCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694 153 LYAPLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 202 (337)
Q Consensus 153 ld~aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g 202 (337)
+++.|.. ||. ..+.+ |+.+.|.+|++...... .++.+.+.-+...+++
T Consensus 147 ~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 147 LLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp S-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred cChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 4555543 443 34555 99999999998887655 4555666666666654
No 148
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1.3e-09 Score=107.96 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=85.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----------ecCCc------------c-ccCCCC---ChHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAGE------------L-ESGNAG---EPAKLIRQ 71 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----------vs~s~------------l-~~~~~G---e~~~~ir~ 71 (337)
-+.|..+|||||||+|||++|+++|+.+...-.. -.++. + ...+.| .....|++
T Consensus 35 ~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~ 114 (397)
T PRK14955 35 GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRL 114 (397)
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH
Confidence 3678999999999999999999999998763100 00000 0 000111 11234444
Q ss_pred HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 72 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 72 ~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
+-+.+...-..+...|+||||+|.+... .. ..|+..++ ...+...+|++|++++
T Consensus 115 l~~~~~~~p~~~~~kvvIIdea~~l~~~------------~~-~~LLk~LE-------------ep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 115 LRENVRYGPQKGRYRVYIIDEVHMLSIA------------AF-NAFLKTLE-------------EPPPHAIFIFATTELH 168 (397)
T ss_pred HHHHHhhchhcCCeEEEEEeChhhCCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEeCChH
Confidence 4333311111345579999999876321 11 22333334 3344566777777888
Q ss_pred CCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHH
Q 019694 152 TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIV 194 (337)
Q Consensus 152 ~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la 194 (337)
.+.+++.. |+. .+.+ ++.++..+++...++..+ ++.+.+.
T Consensus 169 kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~ 212 (397)
T PRK14955 169 KIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQ 212 (397)
T ss_pred HhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 89888876 333 2444 678888888877776554 4444333
No 149
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=3e-09 Score=110.16 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=93.7
Q ss_pred HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec-C--------------------CccccCC--CC
Q 019694 7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-A--------------------GELESGN--AG 63 (337)
Q Consensus 7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs-~--------------------s~l~~~~--~G 63 (337)
..+++++.. -+.|..+||+||+|+|||++|+++|+.+.+.....+ + .++..-. ..
T Consensus 34 ~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~ 111 (598)
T PRK09111 34 RTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASH 111 (598)
T ss_pred HHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccccc
Confidence 334444443 367889999999999999999999999875422111 0 0010000 00
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694 64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 143 (337)
Q Consensus 64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v 143 (337)
.+...||++...+...--.....|+||||+|.+.. ... ..|+..+. +....+.+
T Consensus 112 ~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~-naLLKtLE-------------ePp~~~~f 165 (598)
T PRK09111 112 TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAF-NALLKTLE-------------EPPPHVKF 165 (598)
T ss_pred CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHH-HHHHHHHH-------------hCCCCeEE
Confidence 12335666666552211244568999999987631 112 23333344 34456778
Q ss_pred EEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694 144 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 188 (337)
Q Consensus 144 I~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l 188 (337)
|++|+.++.+.+.++. |+.. +.+ |+.++...+++..+...++
T Consensus 166 Il~tte~~kll~tI~S--Rcq~-~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 166 IFATTEIRKVPVTVLS--RCQR-FDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred EEEeCChhhhhHHHHh--heeE-EEecCCCHHHHHHHHHHHHHHcCC
Confidence 8888888889888765 5544 444 8899988888888776654
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=2.5e-09 Score=110.20 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=87.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|..+|||||||+|||++|+++|+.+... ++.+++. .......++++.+
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idga------s~~~vddIr~l~e 109 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGA------SNTSVQDVRQIKE 109 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCc------ccCCHHHHHHHHH
Confidence 578899999999999999999999998642 1111111 0012234555544
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+...-..+...|++|||+|.+.. ...+ .|+..++ .+...+.+|++|+.++.|.
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~Ls~------------~a~n-aLLK~LE-------------epp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHMLSN------------SAFN-ALLKTIE-------------EPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred HHHhchhcCCCEEEEEEChhhcCH------------HHHH-HHHHhhc-------------cCCCCEEEEEecCChHHhH
Confidence 441111245677999999987631 1222 3333444 3456678888888899999
Q ss_pred chhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC
Q 019694 155 APLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~ 189 (337)
++++. |+..+-.- |+.++..++++..+...++.
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 164 ATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred HHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 99876 55443333 88888888888777655543
No 151
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.8e-09 Score=102.76 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC------------------------CCcEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~------------------------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|..+||+||||+|||++|.++|+++. -.++.++.++.....+ ....|+++-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i--~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDI--IVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcc--hHHHHHHHHH
Confidence 5677999999999999999999999987 4567777765443221 1122333222
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.....-..+..-||+|||+|.+.... .+ .|+..+. ++..+.++|++||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~A------------~n-allk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTEDA------------AN-ALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHHH------------HH-HHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 22000012567899999999874321 12 2222222 5567889999999999999
Q ss_pred chhccCCCceEEEeCC
Q 019694 155 APLIRDGRMEKFYWAP 170 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~P 170 (337)
+++.. |+-.+...|
T Consensus 154 ~tI~S--Rc~~i~f~~ 167 (325)
T COG0470 154 PTIRS--RCQRIRFKP 167 (325)
T ss_pred chhhh--cceeeecCC
Confidence 98876 554433334
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=5.5e-09 Score=108.51 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=92.3
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----------ecCC------------cc-ccCCC
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAG------------EL-ESGNA 62 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----------vs~s------------~l-~~~~~ 62 (337)
++.+++.+. +-+.|.++||+||||||||++|+.+|+.+...--. -.++ .+ ...+.
T Consensus 25 ~~~L~~~i~--~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d 102 (620)
T PRK14954 25 THTIQNSLR--MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFD 102 (620)
T ss_pred HHHHHHHHH--cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEec
Confidence 334444443 33778999999999999999999999998763100 0000 00 00011
Q ss_pred CC---hHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCC
Q 019694 63 GE---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 139 (337)
Q Consensus 63 Ge---~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~ 139 (337)
|. +...|+++-+.....-..+...|++|||+|.+... . ...|+..++ +...
T Consensus 103 ~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------------a-~naLLK~LE-------------ePp~ 156 (620)
T PRK14954 103 AASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------------A-FNAFLKTLE-------------EPPP 156 (620)
T ss_pred ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH------------H-HHHHHHHHh-------------CCCC
Confidence 11 12344544333311011345679999999876321 1 223444445 3344
Q ss_pred CceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHH
Q 019694 140 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIV 194 (337)
Q Consensus 140 ~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la 194 (337)
.+.+|++|++++.|.+++..++. .+.+ ++.++....+..++...+ ++.+.+.
T Consensus 157 ~tv~IL~t~~~~kLl~TI~SRc~---~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 157 HAIFIFATTELHKIPATIASRCQ---RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred CeEEEEEeCChhhhhHHHHhhce---EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 56677777888999999876433 3444 778888888887776554 5554333
No 153
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=6.2e-09 Score=106.25 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=90.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 73 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f 73 (337)
-+.|..+|||||||+|||++|+++|+.+... ++.++++. ......||+..
T Consensus 33 grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas------~~gId~IReli 106 (535)
T PRK08451 33 NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELI 106 (535)
T ss_pred CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHH
Confidence 3678899999999999999999999987421 22222110 01123455555
Q ss_pred HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 153 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l 153 (337)
..+...-..+...|++|||+|.+... .. ..|+..+. ++...+.+|++|+++..|
T Consensus 107 e~~~~~P~~~~~KVvIIDEad~Lt~~------------A~-NALLK~LE-------------Epp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 107 EQTKYKPSMARFKIFIIDEVHMLTKE------------AF-NALLKTLE-------------EPPSYVKFILATTDPLKL 160 (535)
T ss_pred HHHhhCcccCCeEEEEEECcccCCHH------------HH-HHHHHHHh-------------hcCCceEEEEEECChhhC
Confidence 44310001234569999999876321 12 23444444 334557788888999999
Q ss_pred cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhc
Q 019694 154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVD 198 (337)
Q Consensus 154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~ 198 (337)
+++++. |+.. +.+ ++.++..+.+..++...++ +.+.+..++.
T Consensus 161 ~~tI~S--Rc~~-~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 161 PATILS--RTQH-FRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred chHHHh--hcee-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999876 5443 444 7888888888888776655 4444444443
No 154
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=7e-09 Score=107.62 Aligned_cols=150 Identities=11% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe---cC--------------Cccc--cCCCCChHHHHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA--------------GELE--SGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v---s~--------------s~l~--~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
+.+..+|||||||+|||++|+++|+.+....-.- .+ .++. +.........++++.+.+...
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~ 115 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFR 115 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC
Confidence 5678899999999999999999999986421100 00 0000 000011223344444333111
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
-......||||||+|.+.. ...+ .|+..++ .....+++|++|+..+.+.+.+..
T Consensus 116 p~~~~~kVvIIDEa~~L~~------------~a~n-aLLk~LE-------------epp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 116 PALARYKVYIIDEVHMLST------------AAFN-ALLKTLE-------------EPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred cccCCeEEEEEeChHhCCH------------HHHH-HHHHHHh-------------cCCCCeEEEEEeCChhhhhHHHHh
Confidence 1134567999999987632 1122 3344444 223456778888888888888765
Q ss_pred CCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694 160 DGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV 197 (337)
Q Consensus 160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~ 197 (337)
|+.+ +.+ ++..+...++...+...+ ++.+.+..++
T Consensus 170 --R~~~-i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 170 --RCQR-FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred --ccce-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444 344 788888888877776554 4444444433
No 155
>PRK08116 hypothetical protein; Validated
Probab=98.96 E-value=1.7e-09 Score=101.84 Aligned_cols=100 Identities=24% Similarity=0.381 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH-----HHHHHH-hcCceEEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLMI 90 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~-----A~~~~~-~~~p~Il~I 90 (337)
.+.|++|||+||||||+||.++|+++ +.+++.++.+++.+.+ ...|.. ..+.+. -....+|+|
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i--------~~~~~~~~~~~~~~~~~~l~~~dlLvi 184 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI--------KSTYKSSGKEDENEIIRSLVNADLLIL 184 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------HHHHhccccccHHHHHHHhcCCCEEEE
Confidence 45789999999999999999999986 7788888877654321 111110 001112 234569999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
||+.... . +......|.++++ . ....+.++|+|||..
T Consensus 185 DDlg~e~--------~---t~~~~~~l~~iin--------~----r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 185 DDLGAER--------D---TEWAREKVYNIID--------S----RYRKGLPTIVTTNLS 221 (268)
T ss_pred ecccCCC--------C---CHHHHHHHHHHHH--------H----HHHCCCCEEEECCCC
Confidence 9985311 0 1122344556666 1 123456899999975
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.3e-08 Score=98.03 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=90.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC-----cEEecCCccccC---------------CCCChHHHHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESG---------------NAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----~i~vs~s~l~~~---------------~~Ge~~~~ir~~f~~A~~~ 79 (337)
.|..+++|||||||||..++.+++++.-. ++.+++-.+.+. ..|-+. .+.|+.-.+.
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~---~~~~~~l~~~ 117 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSS---LEILKRLYDN 117 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCch---HHHHHHHHHH
Confidence 34459999999999999999999988544 788888765332 122221 2333333333
Q ss_pred HH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcc
Q 019694 80 IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYA 155 (337)
Q Consensus 80 ~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~ 155 (337)
+. .....||++||+|.+..+.+ ..|.+++..+ .....+|.+|+.+|+.+ .+|+
T Consensus 118 ~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~~----------~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 118 LSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLRAP----------GENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHhcCCeEEEEEcchhhhccccc-------------hHHHHHHhhc----------cccceeEEEEEEeccHHHHHHhhh
Confidence 34 56788999999999886543 2334443311 12267889999999874 6777
Q ss_pred hhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 156 PLIRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 156 aLlR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
-+...-.... +.+ .+.+|..+|++.-.
T Consensus 175 rv~s~l~~~~-I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 175 RVKSSLGPSE-IVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhccCcce-eeeCCCCHHHHHHHHHHHH
Confidence 7664433334 344 78899999976554
No 157
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.93 E-value=1.5e-09 Score=105.09 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=54.8
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-CCcchhccCC
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 161 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-~ld~aLlR~g 161 (337)
...+||+|||+.+.. .+.+.|++.++..+ .++.+|.. .....++++|+|+|-.+ .++++|+.
T Consensus 128 ~~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 128 NRGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--
Confidence 346999999986532 33455556665322 12333431 12345788889988644 58889986
Q ss_pred CceEEEeC--CCH-HHHHHHHHHhc
Q 019694 162 RMEKFYWA--PTR-EDRIGVCKGIF 183 (337)
Q Consensus 162 R~d~~i~~--P~~-~~R~~Il~~~~ 183 (337)
||...+.+ |.. ++|.+|+....
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 89888888 444 88999987754
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=3.1e-08 Score=97.15 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=96.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE-------------EecC-------------Ccc--ccC---CCCC--
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------------MMSA-------------GEL--ESG---NAGE-- 64 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i-------------~vs~-------------s~l--~~~---~~Ge-- 64 (337)
-+.|.++||+||+|+||+++|.++|+.+-..-- .+++ .++ ... ..|.
T Consensus 38 ~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~ 117 (365)
T PRK07471 38 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRL 117 (365)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccc
Confidence 478999999999999999999999998732110 0000 000 000 0010
Q ss_pred ----hHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCC
Q 019694 65 ----PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 140 (337)
Q Consensus 65 ----~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~ 140 (337)
....||++-+.+......+.+.|++|||+|.+-. .. ...|+..+. +...+
T Consensus 118 ~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------------~a-anaLLK~LE-------------epp~~ 171 (365)
T PRK07471 118 RTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------------NA-ANALLKVLE-------------EPPAR 171 (365)
T ss_pred cccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------------HH-HHHHHHHHh-------------cCCCC
Confidence 1123444444332222356789999999997521 11 223444444 34466
Q ss_pred ceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH---HHHHHHhcCCCchhhHh
Q 019694 141 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 141 V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~---~~la~l~~gf~gadl~~ 207 (337)
+.+|++|++++.+.+.++. |+..+..- |+.++-.+++...... .+. ..+..++.|-++..+.+
T Consensus 172 ~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~--~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPD--LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhccc--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7888999999999887754 66554443 8899998888776532 222 35666677766655544
No 159
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.2e-08 Score=96.51 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=93.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------cEEe-cC--------------Ccc--c-cCC-C--C-----
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMM-SA--------------GEL--E-SGN-A--G----- 63 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------~i~v-s~--------------s~l--~-~~~-~--G----- 63 (337)
.-+.|..+||+||+|+|||++|+.+|+.+... .... .+ .++ . ... . |
T Consensus 41 ~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~ 120 (351)
T PRK09112 41 EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTA 120 (351)
T ss_pred cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccccc
Confidence 34778899999999999999999999987541 1000 00 001 0 000 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694 64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 143 (337)
Q Consensus 64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v 143 (337)
-+...||.+-+........+...|++|||+|.+-.. ..+ .|+..++ ++..++.+
T Consensus 121 I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------aan-aLLk~LE-------------Epp~~~~f 174 (351)
T PRK09112 121 ITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------AAN-AILKTLE-------------EPPARALF 174 (351)
T ss_pred CCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------HHH-HHHHHHh-------------cCCCCceE
Confidence 011234433332211112556789999999976321 112 2444444 34456777
Q ss_pred EEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhH
Q 019694 144 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSID 206 (337)
Q Consensus 144 I~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~ 206 (337)
|+.|+.++.+.+.++. |+- .+.+ |+.++-.+++.......+++.+ .+..++.|-+...+.
T Consensus 175 iLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 175 ILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred EEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHH
Confidence 8888889999888754 663 4555 8999999998875433334443 344445554444443
No 160
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.89 E-value=1.2e-08 Score=99.22 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=54.7
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-CCcchhccCC
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 161 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-~ld~aLlR~g 161 (337)
...+||+|||+.+.. .+++.|++.++..+ .+.-.|.. .....++++|+|.|-.+ .++++|+.
T Consensus 144 ~~GiL~lDEInrL~~-------------~~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 144 NRGILYVDEVNLLDD-------------HLVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred CCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH--
Confidence 457999999986532 23344556655211 11112321 12345778888888555 68999987
Q ss_pred CceEEEeC--CC-HHHHHHHHHHhc
Q 019694 162 RMEKFYWA--PT-REDRIGVCKGIF 183 (337)
Q Consensus 162 R~d~~i~~--P~-~~~R~~Il~~~~ 183 (337)
||...+.+ |+ .+.+.+|++...
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhh
Confidence 88888888 76 699999998754
No 161
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=1.4e-08 Score=93.23 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 101 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~ 101 (337)
.-++||||+|+|||+|++++++..+..++ +...+. .+.+... ...+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~-----------~~~~~~~-------~~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIG-----------SDAANAA-------AEGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcc-----------hHHHHhh-------hcCeEEEECCCCCCC---
Confidence 34899999999999999999988765433 322111 1112111 124899999996521
Q ss_pred CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---CcchhccCCCce--EEEeC--CCHH
Q 019694 102 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--PTRE 173 (337)
Q Consensus 102 ~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~aLlR~gR~d--~~i~~--P~~~ 173 (337)
++ ..|..+++ . ....+..+|+|++. +.. ..+.|+. |+. ..+.+ |+.+
T Consensus 102 --~~---------~~lf~l~n--------~----~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE---------TGLFHLIN--------S----VRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH---------HHHHHHHH--------H----HHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 11 11222322 0 11123356666653 332 3566654 554 55666 9999
Q ss_pred HHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694 174 DRIGVCKGIFRND--NVADDDIVKLVDTFPG 202 (337)
Q Consensus 174 ~R~~Il~~~~~~~--~l~~~~la~l~~gf~g 202 (337)
+|.+|++..+... .++.+.+.-++..+++
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 9999999998765 4555666666666664
No 162
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=2.5e-08 Score=95.69 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=89.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------cEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il 88 (337)
.-+.|..+||+||+|+|||++|+++|+.+-.. ++.+... .++.. ....||++-+.+...-..+...|+
T Consensus 22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~ 97 (313)
T PRK05564 22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVI 97 (313)
T ss_pred cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCC--CHHHHHHHHHHHhcCcccCCceEE
Confidence 34678899999999999999999999986432 1222211 01111 122355554443111124566799
Q ss_pred EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEe
Q 019694 89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~ 168 (337)
+||++|.+... . ...|+..++ ++..++.+|.+|++++.+.+.++. |+. .+.
T Consensus 98 iI~~ad~m~~~------------a-~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~-~~~ 148 (313)
T PRK05564 98 IIYNSEKMTEQ------------A-QNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQ-IYK 148 (313)
T ss_pred EEechhhcCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hce-eee
Confidence 99999875211 1 223444444 445677888888899999999876 443 444
Q ss_pred C--CCHHHHHHHHHHhccCCCCCHHHHHHHh
Q 019694 169 A--PTREDRIGVCKGIFRNDNVADDDIVKLV 197 (337)
Q Consensus 169 ~--P~~~~R~~Il~~~~~~~~l~~~~la~l~ 197 (337)
+ |+.++...++...+. +++.+.+..++
T Consensus 149 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~ 177 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYN--DIKEEEKKSAI 177 (313)
T ss_pred CCCcCHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 4 788888877766553 45555444433
No 163
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.86 E-value=3.7e-09 Score=107.96 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=83.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe----cCCcc-----ccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGEL-----ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v----s~s~l-----~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
.|||+|+||||||++|+++++......+.. ++..+ .+...|+. .++ + +.+......+++|||+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~------~~~-~-G~l~~A~~Gil~iDEi 309 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF------TLE-G-GALVLADNGVCCIDEF 309 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE------Eec-C-ccEEecCCCEEEEech
Confidence 699999999999999999999775433221 11111 11111110 000 0 0111235679999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCCC-------------CCcchhcc
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 159 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR 159 (337)
|.+.. .....|++.++..+. +.-.|. ......+..||+|+|-.. .|+++++.
T Consensus 310 ~~l~~-------------~~q~~L~e~me~~~i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 310 DKMDD-------------SDRTAIHEAMEQQTISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hhCCH-------------HHHHHHHHHHhcCEEEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 97632 223445555542211 111222 112346788999999643 59999997
Q ss_pred CCCceEEEeC---CCHHHHHHHHHHhc
Q 019694 160 DGRMEKFYWA---PTREDRIGVCKGIF 183 (337)
Q Consensus 160 ~gR~d~~i~~---P~~~~R~~Il~~~~ 183 (337)
|||.++.+ |+.+...+|++.++
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHH
Confidence 99998887 99999999987755
No 164
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.85 E-value=4.1e-09 Score=109.35 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=90.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCCChHHHHHHHHHHH-----HHHHHhcCceEEEecccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----~~~~~~~~p~Il~IDEiD 94 (337)
.+|||.|+||||||++|+++++.+.. +|+.+..+...+..+|.- .+...+... ..++......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 47999999999999999999998764 577777543344444432 011111110 001112344699999998
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCCC---CCcchhccCCCceEEEeC-
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYWA- 169 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~aLlR~gR~d~~i~~- 169 (337)
.+.. .+...|++.++..+. +.-.|.. .....++.||+|+|..+ .++++|+. ||...+.+
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 7532 334556666653221 1111221 12234678899999765 78999986 88887776
Q ss_pred --CCHHHHHHHHHHhc
Q 019694 170 --PTREDRIGVCKGIF 183 (337)
Q Consensus 170 --P~~~~R~~Il~~~~ 183 (337)
|+.++|.+|++..+
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 88888999987765
No 165
>PRK12377 putative replication protein; Provisional
Probab=98.84 E-value=4.4e-09 Score=97.81 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=62.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH---HHHHH-hcCceEEEeccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLMINDL 93 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A---~~~~~-~~~p~Il~IDEi 93 (337)
..+++|+||||||||+||.++|+++ |..++.++..++... ++..|... .+.++ -....+|+|||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~--------l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR--------LHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH--------HHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 4689999999999999999999987 566777777655432 12222110 01112 356789999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
...... ......|.++++ . ....+.++|+|||..
T Consensus 173 g~~~~s-----------~~~~~~l~~ii~--------~----R~~~~~ptiitSNl~ 206 (248)
T PRK12377 173 GIQRET-----------KNEQVVLNQIID--------R----RTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCC-----------HHHHHHHHHHHH--------H----HHhcCCCEEEEcCCC
Confidence 653211 112345556665 1 223457899999964
No 166
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.83 E-value=8.6e-09 Score=90.45 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=70.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK 84 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~ 84 (337)
..|.-|||+|++||||+++|++|.+.. +.+|+.++++.+-.. ..-.++|... ..++....
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~------~~e~~LFG~~~~~~~~~~~~~~G~l~~A~ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEE------LLESELFGHEKGAFTGARSDKKGLLEQAN 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HH------HHHHHHHEBCSSSSTTTSSEBEHHHHHTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcc------hhhhhhhccccccccccccccCCceeecc
Confidence 345679999999999999999998865 468999999876221 1112333321 02333447
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 164 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d 164 (337)
...|||||||.+.. .++.-|+++++..+...+++. .....++-||+|||.. +.. ++..|+|.
T Consensus 94 ~GtL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 94 GGTLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp TSEEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred ceEEeecchhhhHH-------------HHHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HHH-HHHcCCCh
Confidence 78999999998743 234555566663332222221 1234578999999952 222 33445553
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=7.7e-08 Score=93.44 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=96.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCc-------------------------EEecCCccccC-------------
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG------------- 60 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~-------------------------i~vs~s~l~~~------------- 60 (337)
+.|.++||+||+|+||+++|+++|+.+.... ..+.......+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 8999999999999999999999999875422 11111000000
Q ss_pred -CCC---------ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCC
Q 019694 61 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 130 (337)
Q Consensus 61 -~~G---------e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~ 130 (337)
-.| -....||++.+........+.-.|++||++|.+-.. ..+ .|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~------------AaN-aLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA------------AAN-ALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH------------HHH-HHHHHhc--------
Confidence 001 011244544444311112445679999999876321 222 3334444
Q ss_pred CccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-HHHHHHhcCCCchhhHh
Q 019694 131 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 131 g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-~~la~l~~gf~gadl~~ 207 (337)
++.+++++|.+|++++.|.|.++. |+-. +.+ |+.++..+.+... +++. ..+..++.|-++..+++
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~-i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQ-FPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALAL 225 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEE-EEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHHH
Confidence 667889999999999999999886 5543 444 8888888888654 2332 34556666666655554
No 168
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.83 E-value=7.4e-09 Score=86.51 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=55.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC-cccc-CCCCChHHHHHHHHHHHHHHHH----hcCceEEEecccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELES-GNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDAG 96 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s-~l~~-~~~Ge~~~~ir~~f~~A~~~~~----~~~p~Il~IDEiD~l 96 (337)
.|||+|+||+|||++|+++|+.++..|..|... ++.- ...|.+ +|........ ---..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccC
Confidence 389999999999999999999999999988664 2211 000100 0000000000 001259999999753
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 159 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR 159 (337)
.. .+++.|++.+. ...|.++|.. -......+||+|-|..+ .|+.|++-
T Consensus 75 pp-------------ktQsAlLeam~-Er~Vt~~g~~-~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 75 PP-------------KTQSALLEAME-ERQVTIDGQT-YPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp -H-------------HHHHHHHHHHH-HSEEEETTEE-EE--SS-EEEEEE-TT--S------HHHHT
T ss_pred CH-------------HHHHHHHHHHH-cCeEEeCCEE-EECCCcEEEEEecCccccCceecCCHHHhc
Confidence 22 23455555554 1233333331 01234578888999776 67777764
No 169
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=4.3e-08 Score=102.15 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=87.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------cEEecCCccccCCCCChHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQR 72 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------------------~i~vs~s~l~~~~~Ge~~~~ir~~ 72 (337)
-+.|..+|||||+|+|||++|+.+|+.+.+. ++.++++ ...+...|+.+
T Consensus 36 ~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~------~~~~vd~Ir~l 109 (614)
T PRK14971 36 NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA------SNNSVDDIRNL 109 (614)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc------ccCCHHHHHHH
Confidence 4678999999999999999999999987632 1222211 01122345555
Q ss_pred HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694 73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 152 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ 152 (337)
...+...--.+...|++|||+|.+.. .. ...|+..++ .......+|++|+..+.
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~~Ls~------------~a-~naLLK~LE-------------epp~~tifIL~tt~~~k 163 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVHMLSQ------------AA-FNAFLKTLE-------------EPPSYAIFILATTEKHK 163 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcccCCH------------HH-HHHHHHHHh-------------CCCCCeEEEEEeCCchh
Confidence 55541111133456999999987632 11 224444555 33345667777777889
Q ss_pred CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694 153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 189 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~ 189 (337)
|.++++. |+.. +.+ ++.++...++..++...++.
T Consensus 164 Il~tI~S--Rc~i-v~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 164 ILPTILS--RCQI-FDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred chHHHHh--hhhe-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999876 4433 444 78888888888877766654
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=98.82 E-value=3.5e-08 Score=105.29 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=97.6
Q ss_pred EEEc--CCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh--cCceEEEeccccc
Q 019694 25 GIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLMINDLDA 95 (337)
Q Consensus 25 LL~G--pPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~--~~p~Il~IDEiD~ 95 (337)
+..| |++.||||+|+++|+++ +.+++.+++++.. +...||+..+.+.....- ....|+||||+|.
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 4568 99999999999999998 5689999998632 234566666655222111 1347999999998
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTRED 174 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~ 174 (337)
+.. ..++.|+.+++ .....+.+|++||+++.+.++++. |+..+-.- |+.++
T Consensus 642 Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~ 693 (846)
T PRK04132 642 LTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 693 (846)
T ss_pred CCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHH
Confidence 732 12344555555 445678999999999999999875 65443333 78888
Q ss_pred HHHHHHHhccCCCC--CHHHHHHHhcCCC
Q 019694 175 RIGVCKGIFRNDNV--ADDDIVKLVDTFP 201 (337)
Q Consensus 175 R~~Il~~~~~~~~l--~~~~la~l~~gf~ 201 (337)
...+++.+....++ +.+.+..++....
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~ 722 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAE 722 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 88888877766554 4555544443333
No 171
>PRK08181 transposase; Validated
Probab=98.80 E-value=4e-09 Score=99.27 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
...+++|+||||||||+||.++++++ |..++.++..++........ .......++ +-.++.+|+|||+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEecccc
Confidence 45689999999999999999998754 66777777766554321000 000111111 124678999999975
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
..... .....|.++++ ..+ .+-++|+|||.+
T Consensus 179 ~~~~~-----------~~~~~Lf~lin--------~R~-----~~~s~IiTSN~~ 209 (269)
T PRK08181 179 VTKDQ-----------AETSVLFELIS--------ARY-----ERRSILITANQP 209 (269)
T ss_pred ccCCH-----------HHHHHHHHHHH--------HHH-----hCCCEEEEcCCC
Confidence 43211 12334555555 111 123799999975
No 172
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.80 E-value=9.5e-09 Score=95.38 Aligned_cols=99 Identities=12% Similarity=0.264 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH----HHHHH-hcCceEEEecc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----ADIIK-KGKMCCLMIND 92 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A----~~~~~-~~~p~Il~IDE 92 (337)
..+++|+|+||||||+|+.++|+++ +..++.++.+++.+.. +..|..+ ..++. -....+|+|||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l--------~~~~~~~~~~~~~~l~~l~~~dlLvIDD 170 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM--------KDTFSNSETSEEQLLNDLSNVDLLVIDE 170 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH--------HHHHhhccccHHHHHHHhccCCEEEEeC
Confidence 3589999999999999999999987 6777788777665321 1122100 01111 23578999999
Q ss_pred cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
++.... .......|.++++ . ....+.++|+|||..
T Consensus 171 ig~~~~-----------s~~~~~~l~~Ii~--------~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 171 IGVQTE-----------SRYEKVIINQIVD--------R----RSSSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCC-----------CHHHHHHHHHHHH--------H----HHhCCCCEEEeCCCC
Confidence 976421 1122234444554 1 123456899999964
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.80 E-value=1.1e-08 Score=107.15 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=86.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh-----------------------------------CCCcEEecCCccccCCCCChH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 66 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l-----------------------------------~~~~i~vs~s~l~~~~~Ge~~ 66 (337)
.+|||+|+||||||++|+++++.+ ..+|+.+..+...+..+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 579999999999999999999887 235555544433333344310
Q ss_pred HHHHHHHHHH-----HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCC
Q 019694 67 KLIRQRYREA-----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPR 140 (337)
Q Consensus 67 ~~ir~~f~~A-----~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~ 140 (337)
+...+... ..++......|||||||+.+.. .+...|++.++... .+.-.|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 11111100 0111222456999999987532 23345556665322 22222321 123467
Q ss_pred ceEEEEeCCC-CCCcchhccCCCceEEEeC---CCHHHHHHHHHHhc
Q 019694 141 VPIIVTGNDF-STLYAPLIRDGRMEKFYWA---PTREDRIGVCKGIF 183 (337)
Q Consensus 141 V~vI~TTN~~-~~ld~aLlR~gR~d~~i~~---P~~~~R~~Il~~~~ 183 (337)
+.+|+|+|-. ..+.++|+. ||+..+.+ .+.+++.+|+....
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 8999999954 368888886 89888888 34677888876543
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.1e-07 Score=91.48 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=99.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----------e---cCCccc----c-CCCCC------hHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------M---SAGELE----S-GNAGE------PAKLIRQR 72 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----------v---s~s~l~----~-~~~Ge------~~~~ir~~ 72 (337)
.-+.|.++||+||+|+||+++|.++|+.+-..--. + +-.++. . ...|. ....||++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 44789999999999999999999999876432100 0 000110 0 01111 12344544
Q ss_pred HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694 73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 152 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ 152 (337)
-+.+...-..+.-.|++||++|.+... .. +.|+..++ ++..++.+|.+|+.++.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~~~------------Aa-NaLLKtLE-------------EPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAINRA------------AC-NALLKTLE-------------EPSPGRYLWLISAQPAR 155 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhCHH------------HH-HHHHHHhh-------------CCCCCCeEEEEECChhh
Confidence 444311112345579999999976321 12 23334444 56678899999999999
Q ss_pred CcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhHhH
Q 019694 153 LYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~~~ 208 (337)
|.|.++. |+-.+... |+.++-.+.+.. .+++.. .+..++.|-++..+++.
T Consensus 156 lLpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHHHHHHHh
Confidence 9999875 66654444 888887777753 245554 56677777777666553
No 175
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.76 E-value=2.7e-08 Score=96.52 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=55.6
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-CCcchhccC
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRD 160 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-~ld~aLlR~ 160 (337)
....+||||||+.+.. .+++.|++.++... .+.-.|.. .....++++|+|+|-.+ .++++|+.
T Consensus 130 A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld- 194 (337)
T TIGR02030 130 ANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD- 194 (337)
T ss_pred ccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh-
Confidence 3568999999987532 33455666665321 12223331 12345778888888544 68999986
Q ss_pred CCceEEEeC--CCH-HHHHHHHHHhc
Q 019694 161 GRMEKFYWA--PTR-EDRIGVCKGIF 183 (337)
Q Consensus 161 gR~d~~i~~--P~~-~~R~~Il~~~~ 183 (337)
||...+.+ |.. ++|.+|++...
T Consensus 195 -Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 -RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred -hcceEEECCCCCCHHHHHHHHHhhh
Confidence 88888888 554 88999987744
No 176
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1e-07 Score=92.00 Aligned_cols=162 Identities=9% Similarity=0.052 Sum_probs=97.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE--EecC--------------Ccc--ccCCCCC--hHHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--MMSA--------------GEL--ESGNAGE--PAKLIRQRYREAA 77 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i--~vs~--------------s~l--~~~~~Ge--~~~~ir~~f~~A~ 77 (337)
-+.|.++||+||+|+||+++|+++|+.+-..-- .-.+ .++ .....|. ....||++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 477899999999999999999999998743110 0000 011 1111111 2345565544442
Q ss_pred HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 157 (337)
Q Consensus 78 ~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL 157 (337)
.....+.-.|++||++|++... . ...|+..++ ++.+++.+|.+|++++.|.|.+
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~~------------A-aNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTEA------------A-ANALLKTLE-------------EPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred hccccCCceEEEEechhhhCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEECChHhCchHH
Confidence 2223566689999999976321 1 233444444 6678889999999999999998
Q ss_pred ccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHh
Q 019694 158 IRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 158 lR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~ 207 (337)
+. |+-.+... |+.++-.+.+........-....+..++.|-++..+++
T Consensus 155 ~S--RC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 155 YS--RCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPLLALTF 203 (325)
T ss_pred Hh--hceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHHHHHHH
Confidence 75 55554444 77888877776543221111123344555555544444
No 177
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.75 E-value=2.4e-07 Score=84.84 Aligned_cols=154 Identities=14% Similarity=0.208 Sum_probs=97.9
Q ss_pred chhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694 2 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAAD 78 (337)
Q Consensus 2 ~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~ 78 (337)
|++-..+++|......-.+-..|||||..|||||+|+||+-++. |..++.|+..++.. +-.+++.-
T Consensus 66 d~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~L-- 134 (287)
T COG2607 66 DRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELL-- 134 (287)
T ss_pred hHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHH--
Confidence 45555566666664444566789999999999999999998776 56677887765432 11233322
Q ss_pred HHH-hcCceEEEecccccccccCC-CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694 79 IIK-KGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 156 (337)
Q Consensus 79 ~~~-~~~p~Il~IDEiD~l~~~~~-~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a 156 (337)
+ ....-|||+||+- +. |.+.+ ..|...++ |. ......+|+|.+|+|+-+.|+.-
T Consensus 135 --r~~~~kFIlFcDDLS-----Fe~gd~~y--------K~LKs~Le--------G~-ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 135 --RARPEKFILFCDDLS-----FEEGDDAY--------KALKSALE--------GG-VEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred --hcCCceEEEEecCCC-----CCCCchHH--------HHHHHHhc--------CC-cccCCCeEEEEEecCCcccccHh
Confidence 4 5567899999872 11 11111 23333344 33 22346789999999999887744
Q ss_pred hc--------------------cCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH
Q 019694 157 LI--------------------RDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD 190 (337)
Q Consensus 157 Ll--------------------R~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~ 190 (337)
+. =..||-..+-+ ++.++=..|+..+.+..+++.
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred hhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 32 12355555555 677777777777776665554
No 178
>PRK06526 transposase; Provisional
Probab=98.74 E-value=6.4e-09 Score=97.12 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
++.+.+++|+||||||||+||.+++.++ |..++.++..++........ ....+.. .+.+-..+.+|+|||++
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~---~~~~~~~--~l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH---HAGRLQA--ELVKLGRYPLLIVDEVG 169 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH---hcCcHHH--HHHHhccCCEEEEcccc
Confidence 3456789999999999999999998875 55555555554432211000 0000000 11122457899999998
Q ss_pred cc
Q 019694 95 AG 96 (337)
Q Consensus 95 ~l 96 (337)
..
T Consensus 170 ~~ 171 (254)
T PRK06526 170 YI 171 (254)
T ss_pred cC
Confidence 64
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.6e-08 Score=102.87 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=98.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
+....-+|.|+||+|||.++.-+|... +..++.++.+.+. .+|-|+-+..++.+.++. ++..+.
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~v 264 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNV 264 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCe
Confidence 334445789999999999999998864 4567788887775 468899999999988888 766699
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 161 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g 161 (337)
|||||||..+.+.-+......-..-++.-.| .++.+-+|++|...+ .=|+||-|
T Consensus 265 ILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-------------------ARGeL~~IGATT~~EYRk~iEKD~AL~R-- 323 (786)
T COG0542 265 ILFIDEIHTIVGAGATEGGAMDAANLLKPAL-------------------ARGELRCIGATTLDEYRKYIEKDAALER-- 323 (786)
T ss_pred EEEEechhhhcCCCcccccccchhhhhHHHH-------------------hcCCeEEEEeccHHHHHHHhhhchHHHh--
Confidence 9999999998865331110000011111111 245567787776422 45899999
Q ss_pred CceEEEeC-CCHHHHHHHHHHhc
Q 019694 162 RMEKFYWA-PTREDRIGVCKGIF 183 (337)
Q Consensus 162 R~d~~i~~-P~~~~R~~Il~~~~ 183 (337)
||-.+.-- |+.++-..|++.+-
T Consensus 324 RFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 324 RFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cCceeeCCCCCHHHHHHHHHHHH
Confidence 88885555 99999999977654
No 180
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=2.1e-07 Score=96.99 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=32.3
Q ss_pred HhhhhcC--CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 9 TKNFMSL--PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 9 ~k~~l~~--~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
++.++.. .+..+.+.++|+||||||||++++.+|++++..++.
T Consensus 96 l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 96 VETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred HHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4455542 233445679999999999999999999999876543
No 181
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.70 E-value=1e-08 Score=90.78 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChH-HHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~-~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
++...+++|+||||||||+||.++++++ |..+..++.++|......... ......+.. -....+|+|||+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~------l~~~dlLilDDl 117 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR------LKRVDLLILDDL 117 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH------HHTSSCEEEETC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc------cccccEeccccc
Confidence 4557899999999999999999998865 778888888776433211100 001112222 235679999998
Q ss_pred c
Q 019694 94 D 94 (337)
Q Consensus 94 D 94 (337)
-
T Consensus 118 G 118 (178)
T PF01695_consen 118 G 118 (178)
T ss_dssp T
T ss_pred c
Confidence 4
No 182
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=3.1e-07 Score=88.37 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=99.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc----------EEecCCccc--cC---CCCC------------------
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP----------IMMSAGELE--SG---NAGE------------------ 64 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~----------i~vs~s~l~--~~---~~Ge------------------ 64 (337)
-+.|.++||+||+|+||+++|.++|+.+-..- ...+.+++. .. ..|+
T Consensus 23 ~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (314)
T PRK07399 23 NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPP 102 (314)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccc
Confidence 36788999999999999999999999863321 011111111 00 0011
Q ss_pred --hHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694 65 --PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 142 (337)
Q Consensus 65 --~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~ 142 (337)
....+|++-+.+...-..+...|++||++|.+-. .....|+..++ ++. +..
T Consensus 103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------------~aaNaLLK~LE-------------EPp-~~~ 155 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------------AAANALLKTLE-------------EPG-NGT 155 (314)
T ss_pred cCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------CCC-CCe
Confidence 0123455444431111245678999999987621 11234444555 333 557
Q ss_pred EEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH--HHHHHHhcCCCchhhHhH
Q 019694 143 IIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 143 vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~--~~la~l~~gf~gadl~~~ 208 (337)
+|.+|++++.|.|.++. |+-.+..- |+.++..+++.........+. ..+..++.|-++..++..
T Consensus 156 fILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHH
Confidence 88888999999999875 55443333 888999998887655444443 667777777777666543
No 183
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.69 E-value=3.8e-08 Score=94.30 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH--HHHHHH-hcCceEEEeccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE--AADIIK-KGKMCCLMINDL 93 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~--A~~~~~-~~~p~Il~IDEi 93 (337)
..+|++|+||||||||+|+.|+|+++ |..+..+..+++.... +..|.. ..+.++ -....+|+||||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 56899999999999999999999987 6777777766554321 111110 001111 346779999999
Q ss_pred cc
Q 019694 94 DA 95 (337)
Q Consensus 94 D~ 95 (337)
..
T Consensus 227 G~ 228 (306)
T PRK08939 227 GA 228 (306)
T ss_pred CC
Confidence 53
No 184
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.68 E-value=4.9e-08 Score=94.52 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 85 (337)
....|||+|++||||+++|++|.... +.+|+.++++.+-... .-..+|.... +.+.....
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~g 94 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADG 94 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCC
Confidence 34569999999999999999997655 3689999998653211 1112222110 01123357
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhc
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 158 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLl 158 (337)
..|||||||.+.. .++..|+.++++.....+.+. .....++.||+|||.. ..+.+.|.
T Consensus 95 GtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 95 GTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 8999999997642 234455556553222222221 1224567899999853 23334444
Q ss_pred cCCCce-EEEeCCCHHHH
Q 019694 159 RDGRME-KFYWAPTREDR 175 (337)
Q Consensus 159 R~gR~d-~~i~~P~~~~R 175 (337)
. |+. ..+.+|...+|
T Consensus 160 ~--rl~~~~i~lPpLReR 175 (329)
T TIGR02974 160 D--RLAFDVITLPPLRER 175 (329)
T ss_pred H--HhcchhcCCCchhhh
Confidence 3 443 34556887776
No 185
>PRK06921 hypothetical protein; Provisional
Probab=98.67 E-value=9e-08 Score=90.02 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH-HhcCceEEEecccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLD 94 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~-~~~~p~Il~IDEiD 94 (337)
...+++|+||||+|||+|+.++|+++ |..++.++..++.. .++..|....+.+ .-....+|+|||+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 35789999999999999999999986 55666666554432 1222332221121 23467899999995
Q ss_pred c
Q 019694 95 A 95 (337)
Q Consensus 95 ~ 95 (337)
.
T Consensus 188 ~ 188 (266)
T PRK06921 188 K 188 (266)
T ss_pred c
Confidence 4
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.4e-07 Score=89.67 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCCh--HHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEP--AKLIR 70 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~--~~~ir 70 (337)
.-+.|..+|||||+|+|||++|+++|+.+-.. +..+.. .|.. ...||
T Consensus 24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~-------~~~~i~id~ir 96 (329)
T PRK08058 24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP-------DGQSIKKDQIR 96 (329)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc-------ccccCCHHHHH
Confidence 34678999999999999999999999986432 111111 1111 12344
Q ss_pred HHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 71 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 71 ~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
++-+.....-..+...|++|||+|.+... ....|+..++ ++...+.+|.+|+.+
T Consensus 97 ~l~~~~~~~~~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LE-------------EPp~~~~~Il~t~~~ 150 (329)
T PRK08058 97 YLKEEFSKSGVESNKKVYIIEHADKMTAS-------------AANSLLKFLE-------------EPSGGTTAILLTENK 150 (329)
T ss_pred HHHHHHhhCCcccCceEEEeehHhhhCHH-------------HHHHHHHHhc-------------CCCCCceEEEEeCCh
Confidence 44433311001345679999999865311 1234445555 455677888899999
Q ss_pred CCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHH
Q 019694 151 STLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADD 191 (337)
Q Consensus 151 ~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~ 191 (337)
+.|.+.++. |+-.+... |+.++-.++++. .+++..
T Consensus 151 ~~ll~TIrS--Rc~~i~~~~~~~~~~~~~L~~----~gi~~~ 186 (329)
T PRK08058 151 HQILPTILS--RCQVVEFRPLPPESLIQRLQE----EGISES 186 (329)
T ss_pred HhCcHHHHh--hceeeeCCCCCHHHHHHHHHH----cCCChH
Confidence 999999876 54443333 777777776653 346553
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=3.8e-08 Score=95.20 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=44.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH---HHH-HHHhcCceEEEecccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AAD-IIKKGKMCCLMINDLD 94 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~---A~~-~~~~~~p~Il~IDEiD 94 (337)
.+++||||||||||+|+.++|+++ |..++.++..++...... ..|.. ... +-.-....+|+|||+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~-------~~~~~~~~~~~~~~~l~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE-------IRFNNDKELEEVYDLLINCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH-------HHhccchhHHHHHHHhccCCEEEEeccC
Confidence 789999999999999999999986 667778887766432210 00100 000 1112355799999995
Q ss_pred c
Q 019694 95 A 95 (337)
Q Consensus 95 ~ 95 (337)
.
T Consensus 257 ~ 257 (329)
T PRK06835 257 T 257 (329)
T ss_pred C
Confidence 4
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.66 E-value=7.3e-08 Score=96.89 Aligned_cols=137 Identities=13% Similarity=0.140 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCC-ccccCCCCCh-HHHH--HHHHHHHHHHHHhc---CceEEEec
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLMIN 91 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s-~l~~~~~Ge~-~~~i--r~~f~~A~~~~~~~---~p~Il~ID 91 (337)
...|||+||||||||++|++++..++. +|...... ..-+..+|.. .... ...|... ..+ ...+||+|
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~----~~G~L~~A~lLfLD 114 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRL----TSGYLPEAEIVFLD 114 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhh----cCCccccccEEeec
Confidence 456999999999999999999998753 33322221 0111222321 0110 1122211 111 23499999
Q ss_pred ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc------hhccCCCceE
Q 019694 92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA------PLIRDGRMEK 165 (337)
Q Consensus 92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~------aLlR~gR~d~ 165 (337)
||.... ......|++.+..-. +..++. ....+..++++|||. +|. ++.- ||-.
T Consensus 115 EI~ras-------------p~~QsaLLeam~Er~-~t~g~~--~~~lp~rfiv~ATN~---LPE~g~~leAL~D--RFli 173 (498)
T PRK13531 115 EIWKAG-------------PAILNTLLTAINERR-FRNGAH--EEKIPMRLLVTASNE---LPEADSSLEALYD--RMLI 173 (498)
T ss_pred ccccCC-------------HHHHHHHHHHHHhCe-EecCCe--EEeCCCcEEEEECCC---CcccCCchHHhHh--hEEE
Confidence 996432 133455666664221 111221 122334456666673 554 7774 7866
Q ss_pred EEeC--CC-HHHHHHHHHHh
Q 019694 166 FYWA--PT-REDRIGVCKGI 182 (337)
Q Consensus 166 ~i~~--P~-~~~R~~Il~~~ 182 (337)
.+.+ |+ .++-.+|+...
T Consensus 174 ri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EEECCCCCchHHHHHHHHcc
Confidence 7777 54 34557777653
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.8e-07 Score=90.67 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=98.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-cE-EecC--------------Ccc--ccCCCC---ChHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PI-MMSA--------------GEL--ESGNAG---EPAKLIRQRYRE 75 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-~i-~vs~--------------s~l--~~~~~G---e~~~~ir~~f~~ 75 (337)
.-+.|-++||+||+|+||+++|.++|+.+-.. .- ...+ .++ .....+ -+...||++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 45789999999999999999999999987431 00 0000 011 001111 123345555544
Q ss_pred HHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694 76 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 155 (337)
Q Consensus 76 A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~ 155 (337)
+...-..+.-.|++||++|++-.. .. ..|+..++ ++..++++|.+|++++.|.|
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~------------Aa-NaLLKtLE-------------EPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDA------------AA-NALLKTLE-------------EPPENTWFFLACREPARLLA 153 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHH------------HH-HHHHHHhc-------------CCCCCeEEEEEECChhhChH
Confidence 422223567789999999976321 22 34444545 56778899999999999999
Q ss_pred hhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhHh
Q 019694 156 PLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDF 207 (337)
Q Consensus 156 aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~~ 207 (337)
.++. |+-.+..- |+.++..+.+... .+++.+ .++.++.|-++..+++
T Consensus 154 TIrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 154 TLRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9876 44443222 7777777776532 245554 4455666766655554
No 190
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.65 E-value=9.5e-08 Score=77.39 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
|.||||||+|||++|+.+|+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988775
No 191
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.64 E-value=1.7e-06 Score=80.38 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC-CcEE--ecCCc---------ccc----CCCCCh-HHHHHHHHHHHHHHHHhc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAGE---------LES----GNAGEP-AKLIRQRYREAADIIKKG 83 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~--vs~s~---------l~~----~~~Ge~-~~~ir~~f~~A~~~~~~~ 83 (337)
+..++|+||+|+|||++++.+++++.. .+.. +.... +.. ...+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 446889999999999999999998763 2221 11111 110 111111 112223333332334577
Q ss_pred CceEEEecccccc
Q 019694 84 KMCCLMINDLDAG 96 (337)
Q Consensus 84 ~p~Il~IDEiD~l 96 (337)
.+.+|+|||++.+
T Consensus 123 ~~~vliiDe~~~l 135 (269)
T TIGR03015 123 KRALLVVDEAQNL 135 (269)
T ss_pred CCeEEEEECcccC
Confidence 8899999999875
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=8.7e-07 Score=85.34 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=98.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE-e--------------cCCcc--ccCC-CCC--hHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-M--------------SAGEL--ESGN-AGE--PAKLIRQRYREA 76 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~-v--------------s~s~l--~~~~-~Ge--~~~~ir~~f~~A 76 (337)
.-+.|.++||+||.|+||+++|+++|+.+-..--. . +-.++ .... .|. ....||++-+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 45789999999999999999999999976431100 0 00111 0000 111 123445543333
Q ss_pred HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694 77 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 156 (337)
Q Consensus 77 ~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a 156 (337)
......+.-.|++||++|.+... .. ..|+..++ ++..++.+|.+|++++.|.|.
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~------------Aa-NaLLKtLE-------------EPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES------------AS-NALLKTLE-------------EPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH------------HH-HHHHHHhc-------------CCCCCeEEEEEECChhhChHH
Confidence 22222455679999999976321 22 33444444 567788999999999999999
Q ss_pred hccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC-HHHHHHHhcCCCchhhHhH
Q 019694 157 LIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDFF 208 (337)
Q Consensus 157 LlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~-~~~la~l~~gf~gadl~~~ 208 (337)
++. |+-.+... |+.++..+.+... +++ ...+..++.|-++..+++.
T Consensus 155 I~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 155 IVS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred HHh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHHh
Confidence 875 65554433 8888888877542 233 3456667777776666553
No 193
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.6e-07 Score=91.22 Aligned_cols=177 Identities=19% Similarity=0.225 Sum_probs=101.6
Q ss_pred hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694 4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAD 78 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~ 78 (337)
++..+++.+-..+|. .-.-++||||.|.|||+|++|++++.. ..++.++...+...++-..-..=-+-|++-
T Consensus 97 ~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~-- 173 (408)
T COG0593 97 LAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK-- 173 (408)
T ss_pred HHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHh--
Confidence 445566666666654 223389999999999999999988763 235555555443222111000000122222
Q ss_pred HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Cc
Q 019694 79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LY 154 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld 154 (337)
..-.+++||||+.+.++.. . ...+..++-.+.+ .++ -||.|+.+ |.. +.
T Consensus 174 ----y~~dlllIDDiq~l~gk~~--~-----qeefFh~FN~l~~---------------~~k-qIvltsdr~P~~l~~~~ 226 (408)
T COG0593 174 ----YSLDLLLIDDIQFLAGKER--T-----QEEFFHTFNALLE---------------NGK-QIVLTSDRPPKELNGLE 226 (408)
T ss_pred ----hccCeeeechHhHhcCChh--H-----HHHHHHHHHHHHh---------------cCC-EEEEEcCCCchhhcccc
Confidence 2456899999998876543 1 1233333333322 122 45555544 444 44
Q ss_pred chhccCCCce--EEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCchhhHhHHHHH
Q 019694 155 APLIRDGRME--KFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGALR 212 (337)
Q Consensus 155 ~aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~gadl~~~~alr 212 (337)
+.|.. ||. ..+.+ |+.+.|.+|++......+ ++.+.+.-++..++..=-+..+++.
T Consensus 227 ~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 227 DRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred HHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 66765 554 44555 999999999998776554 4556666666666654434445543
No 194
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.61 E-value=2e-07 Score=90.09 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p 85 (337)
.+.-|||+|++||||+++|++|.... +.+|+.++++.+... ..-..+|... ...+.....
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~g 101 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADG 101 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccCC
Confidence 35569999999999999999997654 468999999875311 0111222211 011123356
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhc
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 158 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLl 158 (337)
..|||||||.+.. .++..|+++++........+. .....++.||+||+.. ..+.+.|.
T Consensus 102 GtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 102 GTLFLDELATAPM-------------LVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred CeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 7899999997642 233455555553211111111 1123467889988763 23445555
Q ss_pred cCCCc-eEEEeCCCHHHH
Q 019694 159 RDGRM-EKFYWAPTREDR 175 (337)
Q Consensus 159 R~gR~-d~~i~~P~~~~R 175 (337)
. || ...+.+|...+|
T Consensus 167 ~--~l~~~~i~lPpLReR 182 (326)
T PRK11608 167 D--RLAFDVVQLPPLRER 182 (326)
T ss_pred H--hcCCCEEECCChhhh
Confidence 3 55 446777888777
No 195
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.58 E-value=1.2e-07 Score=91.14 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 77 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~ 77 (337)
|-..-+|||+.||||||||.||-++|++|| .||..+++|++.+..+..++.+ .+.|++|.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~RraI 122 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRAI 122 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHhh
Confidence 545679999999999999999999999997 7999999999999888887554 57777773
No 196
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=4e-07 Score=88.01 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=82.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------cEEecCCccccCCCC-----ChHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAG-----EPAKL 68 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------------------~i~vs~s~l~~~~~G-----e~~~~ 68 (337)
+.|.++||+||+|+|||++|+.+|+.+... ++.++...- ....| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 889999999999999999999999986431 222322100 00011 12345
Q ss_pred HHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC
Q 019694 69 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 148 (337)
Q Consensus 69 ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN 148 (337)
||++-+.+...-..+...|++||++|.+-.. ....|+..++ +...++.+|++|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 6666555522112456679999999875321 1223334444 2224467888999
Q ss_pred CCCCCcchhccCCCceEEEeC-CCHHHHHHHHHH
Q 019694 149 DFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKG 181 (337)
Q Consensus 149 ~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~ 181 (337)
+++.+.+.+.+ |+-.+... |+.++..+.+..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 99999999876 44333223 778877777654
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=5.3e-08 Score=91.19 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCC-hHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge-~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
+.....++|+||||||||+|+.+++.++ |..+..++..++...+... ....+...+... ...+.+++|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 4455689999999999999999997664 6666666655543221100 000011222221 346789999999
Q ss_pred ccc
Q 019694 94 DAG 96 (337)
Q Consensus 94 D~l 96 (337)
+..
T Consensus 174 g~~ 176 (259)
T PRK09183 174 GYL 176 (259)
T ss_pred ccC
Confidence 754
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.56 E-value=4e-07 Score=92.33 Aligned_cols=167 Identities=16% Similarity=0.224 Sum_probs=104.2
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc--E-----------EecCCccc-----cCCCCChHH
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--I-----------MMSAGELE-----SGNAGEPAK 67 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~--i-----------~vs~s~l~-----~~~~Ge~~~ 67 (337)
+..++|.+. .-+..-+.||.||-|||||++||.+|+.+++.- . .+..+.+. +.-...+..
T Consensus 25 ~~~L~nal~--~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVd 102 (515)
T COG2812 25 VKTLSNALE--NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVD 102 (515)
T ss_pred HHHHHHHHH--hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChH
Confidence 334444443 336678999999999999999999999987642 1 11111110 001112334
Q ss_pred HHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe
Q 019694 68 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 147 (337)
Q Consensus 68 ~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT 147 (337)
.+|++-+++.-.--.++.-|.+|||++-+. .+..+++| ..+ +++...|.+|.+|
T Consensus 103 diR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALL-KTL-------------EEPP~hV~FIlAT 156 (515)
T COG2812 103 DIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALL-KTL-------------EEPPSHVKFILAT 156 (515)
T ss_pred HHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHh-ccc-------------ccCccCeEEEEec
Confidence 566666665111116677899999997543 22334444 222 2567889999999
Q ss_pred CCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH--HHHHHHhcCCCc
Q 019694 148 NDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPG 202 (337)
Q Consensus 148 N~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~--~~la~l~~gf~g 202 (337)
..++.+|+-++. |+-++-+- -+.++....+..++..+++.. +.+..+.....|
T Consensus 157 Te~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 157 TEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred CCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 999999999875 44443333 667788888888888776654 555555555555
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.51 E-value=3.3e-07 Score=94.20 Aligned_cols=132 Identities=12% Similarity=0.157 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 85 (337)
...-|||+|++|||||++|++|.... +.+|+.++++.+-.. ..-..+|.... ..+.....
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 291 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET------LLESELFGHEKGAFTGAIAQRKGRFELADG 291 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH------HHHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence 34569999999999999999998875 468999999876221 11112222110 01122356
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc--
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM-- 163 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~-- 163 (337)
..|||||||.+.. .++..|+.+++........+. .....++.+|+|||.. +.. ++..|+|
T Consensus 292 GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~--l~~-~~~~~~f~~ 353 (534)
T TIGR01817 292 GTLFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRD--LEE-AVAKGEFRA 353 (534)
T ss_pred CeEEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCC--HHH-HHHcCCCCH
Confidence 7899999997642 234455566653221111121 1123457889988753 111 2334444
Q ss_pred -------eEEEeCCCHHHH
Q 019694 164 -------EKFYWAPTREDR 175 (337)
Q Consensus 164 -------d~~i~~P~~~~R 175 (337)
...+.+|...+|
T Consensus 354 ~L~~rl~~~~i~lPpLreR 372 (534)
T TIGR01817 354 DLYYRINVVPIFLPPLRER 372 (534)
T ss_pred HHHHHhcCCeeeCCCcccc
Confidence 234666877666
No 200
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.51 E-value=2.5e-07 Score=90.62 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=28.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
+...+|+||.||||+|+|||+|.-+..+.+..
T Consensus 57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ccCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 34678999999999999999999999998765
No 201
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.50 E-value=9e-07 Score=82.71 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH---HHHHHH-hcCceEEEecc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLMIND 92 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~---A~~~~~-~~~p~Il~IDE 92 (337)
-+.+++|+||||+|||+||-|+++++ |..++.+..+++... +...|.. ..++.+ -....+|+|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67899999999999999999998876 778888888876532 2333332 122333 34567999999
Q ss_pred cc
Q 019694 93 LD 94 (337)
Q Consensus 93 iD 94 (337)
+=
T Consensus 176 lG 177 (254)
T COG1484 176 IG 177 (254)
T ss_pred cc
Confidence 83
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.49 E-value=4.3e-07 Score=79.09 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
-+.|..+||+||+|+||+++|+++|+.+-.. ++.++...-.. . -....++.+..
T Consensus 16 ~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~-~--i~i~~ir~i~~ 92 (162)
T PF13177_consen 16 GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK-S--IKIDQIREIIE 92 (162)
T ss_dssp TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS-S--BSHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc-h--hhHHHHHHHHH
Confidence 3779999999999999999999999986332 22222211100 0 12244555544
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
........+..-|++|||+|.+.. .....|+..++ ++..++.+|++|++++.|.
T Consensus 93 ~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 93 FLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKIL 146 (162)
T ss_dssp HCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-
T ss_pred HHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHCh
Confidence 441111245678999999997632 12234444555 5567889999999999999
Q ss_pred chhcc
Q 019694 155 APLIR 159 (337)
Q Consensus 155 ~aLlR 159 (337)
+.++.
T Consensus 147 ~TI~S 151 (162)
T PF13177_consen 147 PTIRS 151 (162)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99886
No 203
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.49 E-value=1.8e-07 Score=90.79 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 76 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A 76 (337)
--++|||.||||||||.||-++|+++| .||..+++|++.+..+..++. +.+.|++|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~qa~Rra 106 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQAFRRA 106 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHHHHHCS
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHHHHHHh
Confidence 468999999999999999999999998 799999999999988777643 34666665
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.48 E-value=2e-07 Score=97.80 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH---H-----HHHHhcCceEEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLM 89 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A---~-----~~~~~~~p~Il~ 89 (337)
..-|||+|++||||+++|++|.+.. +.+|+.++++.+-.. ..-.++|..+ . ..+.......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE------ALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH------HHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 3449999999999999999998865 368999998865211 1111233211 0 011123567899
Q ss_pred ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc------
Q 019694 90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 163 (337)
Q Consensus 90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~------ 163 (337)
|||||.+.. .++..|+.+++......+++. ....-++.||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSP-------------ELQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 999997642 233455556653222222211 01123577999988642 223344555
Q ss_pred ---eEEEeCCCHHHHH
Q 019694 164 ---EKFYWAPTREDRI 176 (337)
Q Consensus 164 ---d~~i~~P~~~~R~ 176 (337)
...+.+|...+|.
T Consensus 484 ~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 484 ALHAFEITIPPLRMRR 499 (638)
T ss_pred hhceeEEeCCChhhhh
Confidence 4556668888873
No 205
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.44 E-value=4.6e-07 Score=92.96 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH-----------hCCCcEEecCCccccCCCCChHHHHHHHHHH-------HH----
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYRE-------AA---- 77 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~-----------l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~-------A~---- 77 (337)
....|||+|++||||+++|++|.+. .+.+|+.++++.+-... +-.++|.. +.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l------leseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL------LEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh------HHHHhcCCccccccCcccccc
Confidence 3556999999999999999999876 45689999998763211 00122221 10
Q ss_pred -HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694 78 -DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 156 (337)
Q Consensus 78 -~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a 156 (337)
.++.......||||||+.+.. .++.-|+.++++.+...+.+. .....++-||++||.. +. .
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~--L~-~ 376 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCD--LE-E 376 (538)
T ss_pred CCchhccCCCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCC--HH-H
Confidence 011222567899999997632 234455556653322222222 1123467899999864 21 2
Q ss_pred hccCCCce---------EEEeCCCHHHHH
Q 019694 157 LIRDGRME---------KFYWAPTREDRI 176 (337)
Q Consensus 157 LlR~gR~d---------~~i~~P~~~~R~ 176 (337)
+...|+|. ..+.+|...+|.
T Consensus 377 ~v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 377 DVRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HHhcccchHHHHHHhcCCeecCCChhhch
Confidence 23334444 234458877763
No 206
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=8.4e-07 Score=73.90 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
.+.++|+||.|+|||++++.+++++. -+++.++..+.......... +.+.|.+- ....+.+||||||..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhh
Confidence 36789999999999999999999887 67777776643221000000 11111111 1236789999999764
No 207
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.44 E-value=5.8e-07 Score=91.95 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 85 (337)
.+.-|||+|++||||+++|++|.... +.+|+.++++.+-+.. .-.++|.... ........
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~------~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL------AESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH------HHHHhcCccccccCCCcccCCcchhhcCC
Confidence 45669999999999999999998874 4689999998763211 0012222110 01122356
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce-
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME- 164 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d- 164 (337)
..|||||||.+.. .++.-|+.++++.....+.+. .....++-||+|||..- ..+...|+|.
T Consensus 283 GtL~ldeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f~~ 344 (509)
T PRK05022 283 GTLFLDEIGELPL-------------ALQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDL---REEVRAGRFRA 344 (509)
T ss_pred CEEEecChhhCCH-------------HHHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCH---HHHHHcCCccH
Confidence 7899999998642 223445555553221122221 12235678999998642 1222233332
Q ss_pred --------EEEeCCCHHHH
Q 019694 165 --------KFYWAPTREDR 175 (337)
Q Consensus 165 --------~~i~~P~~~~R 175 (337)
..|.+|...+|
T Consensus 345 dL~~rl~~~~i~lPpLreR 363 (509)
T PRK05022 345 DLYHRLSVFPLSVPPLRER 363 (509)
T ss_pred HHHhcccccEeeCCCchhc
Confidence 33556887776
No 208
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.43 E-value=5.4e-07 Score=91.76 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
...++|.||||||||++++.++.-+
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhccc
Confidence 4579999999999999999998743
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.42 E-value=9.8e-07 Score=74.58 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=45.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc----------------------CCCCChHHHHHHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 78 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~----------------------~~~Ge~~~~ir~~f~~A~~ 78 (337)
++|+||||+|||+++..++..+ +.+++.++...... .+.... ........+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence 6899999999999999998876 44555554432211 011111 01111112223
Q ss_pred HHHhcCceEEEecccccccc
Q 019694 79 IIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~~ 98 (337)
.+....|.+|+|||+..+..
T Consensus 80 ~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 80 LRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHH
Confidence 34678899999999987753
No 210
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=5.5e-06 Score=84.77 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHhhhhc--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 8 ITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 8 i~k~~l~--~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-++.||. ..+....+.+||+||||||||+.++.+|+++|..+..-
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 5677776 33555667999999999999999999999999877754
No 211
>PF05729 NACHT: NACHT domain
Probab=98.40 E-value=4.1e-06 Score=71.26 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=75.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC---------CcEEecCCccccCCC-CChHHHHHHHHHH--------HHHHHHhc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNA-GEPAKLIRQRYRE--------AADIIKKG 83 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~---------~~i~vs~s~l~~~~~-Ge~~~~ir~~f~~--------A~~~~~~~ 83 (337)
+-++|+|+||+|||++++.++..+.. -++.++..+...... ..-...+...+.. ...++...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35889999999999999999877521 122333333322110 0111111111111 11233467
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
...+|+||-+|.+...... .........+.+++. ....+++.+|+|++... .+. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~------------~~~~~~~~liit~r~~~-~~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP------------QALPPGVKLIITSRPRA-FPD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh------------hccCCCCeEEEEEcCCh-HHH-HHHhcCC
Confidence 7889999999988653321 111122233333333 11235567777776433 321 2221122
Q ss_pred eEEEeC--CCHHHHHHHHHHhccC
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRN 185 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~ 185 (337)
...+.+ -+.+++.++++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 245566 4788888888888754
No 212
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=3.2e-07 Score=75.66 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh--------CCCcEEecCCcccc--------------CCCC-ChHHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELES--------------GNAG-EPAKLIRQRYREAA 77 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l--------~~~~i~vs~s~l~~--------------~~~G-e~~~~ir~~f~~A~ 77 (337)
.+.++++||||+|||++++.+++++ ..+++.++.+...+ ...+ .+. ..+++...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~l~~~~~ 80 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTS---DELRSLLI 80 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-H---HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCH---HHHHHHHH
Confidence 4678999999999999999999987 66777666554321 0111 111 22333333
Q ss_pred HHHHhcCceEEEeccccccc
Q 019694 78 DIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 78 ~~~~~~~p~Il~IDEiD~l~ 97 (337)
+.+......+|+|||+|.+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH
T ss_pred HHHHhcCCeEEEEeChHhcC
Confidence 33456666799999999864
No 213
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.38 E-value=1.9e-06 Score=91.26 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCC--------hHHHHHHHHHHHHHHHHhc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGE--------PAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge--------~~~~ir~~f~~A~~~~~~~ 83 (337)
...-|||+|++|||||++|++|.... +.+|+.+++..+... ..|. .... ...|..|
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a------- 469 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFELA------- 469 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHHhc-------
Confidence 34569999999999999999998764 468999998865321 1221 1000 1223333
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
....|||||||.+.. .++.-|+.+++......+.+. .....++.+|+|||..- ..+...|+|
T Consensus 470 ~~GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f 531 (686)
T PRK15429 470 DKSSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDL---KKMVADREF 531 (686)
T ss_pred CCCeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCH---HHHHHcCcc
Confidence 568999999997632 223344455542211111111 12235678999997642 112222333
Q ss_pred e---------EEEeCCCHHHHHH
Q 019694 164 E---------KFYWAPTREDRIG 177 (337)
Q Consensus 164 d---------~~i~~P~~~~R~~ 177 (337)
. ..|.+|...+|.+
T Consensus 532 ~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 532 RSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred cHHHHhccCeeEEeCCChhhhHh
Confidence 2 2455688777733
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.38 E-value=3e-06 Score=87.46 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=90.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC----------CCcEEecCCccccC----------CCCChH------HHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELESG----------NAGEPA------KLIRQRYREA 76 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~----------~~~i~vs~s~l~~~----------~~Ge~~------~~ir~~f~~A 76 (337)
.+.++|-||||||..++.|-+.|. ..++.+++-.|.+. +.|+.. ..++..|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 678999999999999999977653 46778887766442 333321 1233333322
Q ss_pred HHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694 77 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 155 (337)
Q Consensus 77 ~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~ 155 (337)
+ ...++||+|||+|.++++.. ..|.|++| |.....++++||+.+|..+ ||.
T Consensus 504 ----k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmd-lPE 555 (767)
T KOG1514|consen 504 ----KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMD-LPE 555 (767)
T ss_pred ----CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEeccccc-CHH
Confidence 2 56789999999999987653 24445555 5566788999999999876 444
Q ss_pred hhcc---CCC--ceEEEeC-CCHHHHHHHHHHhccCC
Q 019694 156 PLIR---DGR--MEKFYWA-PTREDRIGVCKGIFRND 186 (337)
Q Consensus 156 aLlR---~gR--~d~~i~~-P~~~~R~~Il~~~~~~~ 186 (337)
-++= ..| +-+.-+. .+.++..+|+..-+...
T Consensus 556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 4431 112 2333333 78999999988777654
No 215
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.38 E-value=3.6e-07 Score=90.02 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH----hCCCcEEecCCccccCC-------------CCChHHHHHHHHHHHHHHHHhc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGN-------------AGEPAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~----l~~~~i~vs~s~l~~~~-------------~Ge~~~~ir~~f~~A~~~~~~~ 83 (337)
-+.||++|++||||+++|+++... .+.+|+.+||+.+.... .|.. ..-..+|+.|
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~-~~k~Glfe~A------- 172 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQ-GGKAGLFEQA------- 172 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeeccc-CCcCchheec-------
Confidence 466999999999999999998543 36699999999764331 1210 0011344444
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc----
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR---- 159 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR---- 159 (337)
....||+|||-.+-. ..+.-|+.+++.-+...+.+ .......|.+|++||. .++.+++.
T Consensus 173 ~GGtLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~--~l~~~~~~g~dl 235 (403)
T COG1221 173 NGGTLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTE--DLEEAVLAGADL 235 (403)
T ss_pred CCCEEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCC--CCCcCCCceeeecccc--CHHHHHHhhcch
Confidence 667999999965422 23455667777544444444 2344678999999985 34444433
Q ss_pred -CCCceEEEeCCCHHHH
Q 019694 160 -DGRMEKFYWAPTREDR 175 (337)
Q Consensus 160 -~gR~d~~i~~P~~~~R 175 (337)
+-|....|.+|...+|
T Consensus 236 ~~rl~~~~I~LPpLrER 252 (403)
T COG1221 236 TRRLNILTITLPPLRER 252 (403)
T ss_pred hhhhcCceecCCChhhc
Confidence 1144555666888777
No 216
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.36 E-value=5.2e-08 Score=87.83 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..+|||+||||||||++|+.+..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3699999999999999999998754
No 217
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.35 E-value=1.4e-06 Score=89.28 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChH--------HHHHHHHHHHHHHHHhc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPA--------KLIRQRYREAADIIKKG 83 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~--------~~ir~~f~~A~~~~~~~ 83 (337)
.+..|||+|++||||+++|++|.+.. +.+|+.++++.+-.. ..|... ..-...|+.|
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A------- 306 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA------- 306 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc-------
Confidence 35679999999999999999998754 568999999866321 111100 0001223333
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--CCcchhccC-
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRD- 160 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--~ld~aLlR~- 160 (337)
....|||||||.+.. .++.-|+.++.+.+...+.+. .....+|-+|+|||..- .+.....|.
T Consensus 307 ~gGTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~l~~~v~~g~fr~d 371 (526)
T TIGR02329 307 HRGTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCALTTAVQQGRFRRD 371 (526)
T ss_pred CCceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCCHHHHhhhcchhHH
Confidence 567899999997632 233445555553322222221 11234568899887642 111111111
Q ss_pred --CCce-EEEeCCCHHHHH
Q 019694 161 --GRME-KFYWAPTREDRI 176 (337)
Q Consensus 161 --gR~d-~~i~~P~~~~R~ 176 (337)
.|+. ..+.+|...+|.
T Consensus 372 L~~rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 372 LFYRLSILRIALPPLRERP 390 (526)
T ss_pred HHHhcCCcEEeCCCchhch
Confidence 1232 455668777763
No 218
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.35 E-value=1.1e-06 Score=93.95 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=76.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC-------CcEEecCCcccc-C--CCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSAGELES-G--NAGEPAKLIRQRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~-------~~i~vs~s~l~~-~--~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I 90 (337)
...|||+|+||||||.+|+++++-... ++..+....... . ..|+ |..-.+.+......+++|
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~--------~~le~GaLvlAdgGtL~I 563 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGR--------AMIQPGAVVLANGGVCCI 563 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCc--------ccccCCcEEEcCCCeEEe
Confidence 347999999999999999999885432 222221111100 0 0010 000000111234579999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCCC-------------CCcch
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAP 156 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~a 156 (337)
||+|++.. .....|++.+...+. +.-.|. ......+.-||+|+|-.. .|+++
T Consensus 564 DEidkms~-------------~~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~ 629 (915)
T PTZ00111 564 DELDKCHN-------------ESRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPS 629 (915)
T ss_pred cchhhCCH-------------HHHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChH
Confidence 99998632 223455566653221 111222 112356789999999642 47889
Q ss_pred hccCCCceEEEeC---CCHHHHHHHH
Q 019694 157 LIRDGRMEKFYWA---PTREDRIGVC 179 (337)
Q Consensus 157 LlR~gR~d~~i~~---P~~~~R~~Il 179 (337)
|+- |||.++.+ |+.+.=..|.
T Consensus 630 LLS--RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 630 LFT--RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred Hhh--hhcEEEEecCCCChHHHHHHH
Confidence 986 99998887 7765544443
No 219
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.33 E-value=7.6e-06 Score=84.01 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=86.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChH-------HHHHHHHHHHHHHHHhcCc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPA-------KLIRQRYREAADIIKKGKM 85 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~-------~~ir~~f~~A~~~~~~~~p 85 (337)
..-|||+|++||||+++|+++.... +.+|+.++++.+-.. ..|... ..-...|+.| ..
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a-------~~ 299 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA-------NG 299 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc-------CC
Confidence 3349999999999999999986654 358999999875321 111100 0001223333 56
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------CCcchhc
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI 158 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------~ld~aLl 158 (337)
..|||||||.+.. .++..|++++.+.+.....+. .....++.||+||+..- .+.+.|.
T Consensus 300 GtL~LdeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 300 GSVLLDEIGEMSP-------------RMQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred CEEEEeChhhCCH-------------HHHHHHHHHHhcCCcccCCCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 7899999997642 223445555553221111111 11234678899887641 1223333
Q ss_pred cCCCce-EEEeCCCHHHHH-HH---HHHhcc----C-----CCCCHHHHHHHhcC-CCch
Q 019694 159 RDGRME-KFYWAPTREDRI-GV---CKGIFR----N-----DNVADDDIVKLVDT-FPGQ 203 (337)
Q Consensus 159 R~gR~d-~~i~~P~~~~R~-~I---l~~~~~----~-----~~l~~~~la~l~~g-f~ga 203 (337)
. |+. ..+.+|...+|. +| +..++. . ..++.+.+..+..- |+|.
T Consensus 365 ~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGN 422 (520)
T PRK10820 365 Y--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGN 422 (520)
T ss_pred h--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCH
Confidence 2 332 445568877764 44 222221 1 24566666666544 6663
No 220
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.32 E-value=7.5e-07 Score=81.40 Aligned_cols=134 Identities=14% Similarity=0.219 Sum_probs=77.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-C----CCcEEecCCccccCCCCChHHHHH---HHHHHHHHHHHhcCceEEEecccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM-G----INPIMMSAGELESGNAGEPAKLIR---QRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l-~----~~~i~vs~s~l~~~~~Ge~~~~ir---~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
.+++.||||||||+-+.++|+++ | -.++.+++|+-. ....+| ..|.+-.-.+..++..||++||.|
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEAD 123 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEAD 123 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccc
Confidence 57799999999999999999986 3 135566666422 122233 345554112225677899999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTRE 173 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~ 173 (337)
++... ..|.+..+ |++.. +..-+..++|..+.|-.|+.. |+-..-+- .+..
T Consensus 124 SMT~g---------AQQAlRRt-MEiyS----------------~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~ 175 (333)
T KOG0991|consen 124 SMTAG---------AQQALRRT-MEIYS----------------NTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQ 175 (333)
T ss_pred hhhhH---------HHHHHHHH-HHHHc----------------ccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHH
Confidence 86421 11222222 22222 223577888999988888764 32222222 4455
Q ss_pred HHHHHHHHhccCCCCCH
Q 019694 174 DRIGVCKGIFRNDNVAD 190 (337)
Q Consensus 174 ~R~~Il~~~~~~~~l~~ 190 (337)
+...-+..+.+.+++..
T Consensus 176 qiL~Rl~~v~k~Ekv~y 192 (333)
T KOG0991|consen 176 QILKRLLEVAKAEKVNY 192 (333)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 55444555555555443
No 221
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.32 E-value=1.4e-05 Score=74.74 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
...+.|.|+|++|+|||+||+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 67889999999999999999999987
No 222
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.1e-06 Score=90.38 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=73.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc---------cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~---------~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
+++.-+||.||.|+|||-||+++|..+ .-.++.++.+++. .+|+|..+- +.+. +.+++..-+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g---g~Lt---eavrrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG---GQLT---EAVKRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH---HHHH---HHHhcCCce
Confidence 367788999999999999999999987 2368888888532 235555421 1222 234677779
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
||||||||+- +. .+...|++++|.-.... +.-......+++||+|+|.-.
T Consensus 663 VVLfdeIEkA--------h~-----~v~n~llq~lD~GrltD--s~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKA--------HP-----DVLNILLQLLDRGRLTD--SHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhc--------CH-----HHHHHHHHHHhcCcccc--CCCcEeeccceEEEEecccch
Confidence 9999999962 22 33445556666322111 111234567899999999744
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.31 E-value=1.5e-06 Score=84.59 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=49.8
Q ss_pred CchhHHHHHhhhhc--CCCCC-CCcEEEEEcCCCchHHHHHHHHHHHhCC-------CcEEecC----CccccCCCCChH
Q 019694 1 MDKLVVHITKNFMS--LPNIK-VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPA 66 (337)
Q Consensus 1 ~~k~~~~i~k~~l~--~~g~~-~p~giLL~GpPGtGKT~lA~aiA~~l~~-------~~i~vs~----s~l~~~~~Ge~~ 66 (337)
||+.+..++ ++++ ..|.. ..++++|+||||+|||++|+++++.++. +++.++. +.+.+...+--.
T Consensus 56 ~~~~i~~lv-~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p 134 (361)
T smart00763 56 MEEAIERFV-NYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFP 134 (361)
T ss_pred cHHHHHHHH-HHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCC
Confidence 345555555 3443 22333 4588999999999999999999999987 8999988 554444444434
Q ss_pred HHHHHHHHH
Q 019694 67 KLIRQRYRE 75 (337)
Q Consensus 67 ~~ir~~f~~ 75 (337)
..+|..|..
T Consensus 135 ~~~r~~~~~ 143 (361)
T smart00763 135 DELREDLED 143 (361)
T ss_pred HHHHHHHHH
Confidence 445555543
No 224
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=2.2e-05 Score=87.73 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc---EEecCCcc---ccCCC----CCh-------HHHHHHHHH------
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGEL---ESGNA----GEP-------AKLIRQRYR------ 74 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~---i~vs~s~l---~~~~~----Ge~-------~~~ir~~f~------ 74 (337)
...++.|.|+|++|+||||||+++++.+...| +.+....+ ...+. ... ...+.++..
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 44567899999999999999999998875433 11111000 00000 000 011111111
Q ss_pred ----HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 75 ----EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 75 ----~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
...+. -..++.+|++||+|.. .....|....+ ....+-.||+||.+.
T Consensus 284 ~~~~~~~~~-L~~krvLLVLDdv~~~---------------~~l~~L~~~~~-------------~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 284 YHLGAMEER-LKHRKVLIFIDDLDDQ---------------DVLDALAGQTQ-------------WFGSGSRIIVITKDK 334 (1153)
T ss_pred CCHHHHHHH-HhCCeEEEEEeCCCCH---------------HHHHHHHhhCc-------------cCCCCcEEEEEeCcH
Confidence 11111 1467889999998731 01111211111 012334688888875
Q ss_pred CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-------HHHHHHhcCCCch
Q 019694 151 STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-------DDIVKLVDTFPGQ 203 (337)
Q Consensus 151 ~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-------~~la~l~~gf~ga 203 (337)
+ +++....++.+.+ |+.++..+++..+.-....+. .++++.+.|.+-+
T Consensus 335 ~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 335 H-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred H-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 4 4554557778887 888888888776653332221 3466667776643
No 225
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.28 E-value=1.2e-06 Score=93.78 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=100.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh-------HHHHHHHHHH-HHHHHHhcCceEEEecccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP-------AKLIRQRYRE-AADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~-------~~~ir~~f~~-A~~~~~~~~p~Il~IDEiD 94 (337)
.+|++||||+|||+.++++|.++|..++..+.++..+++.... ...|..-|.. ......+....||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 4799999999999999999999999999999998766543221 1112222200 0000112233499999999
Q ss_pred cccc-cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc-hhccCCCceEEEeCCCH
Q 019694 95 AGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 172 (337)
Q Consensus 95 ~l~~-~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~-aLlR~gR~d~~i~~P~~ 172 (337)
.+++ .|+ ..+.+.+. .....+++|+|+|+.+.... ++.|.+ ++..+.-|+.
T Consensus 439 ~~~~~dRg-------~v~~l~~l-------------------~~ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-------GVSKLSSL-------------------CKKSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhh-------hHHHHHHH-------------------HHhccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 8775 222 11122211 11466799999999886665 565544 6665555999
Q ss_pred HHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhH
Q 019694 173 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 173 ~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~ 206 (337)
+.+..-+..++... .++...+.+++... |+||.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 99877776666544 56666776666654 55653
No 226
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.26 E-value=6.4e-07 Score=84.52 Aligned_cols=141 Identities=15% Similarity=0.210 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCc---EEecCCccccCCCCChHHHHHHHHHHHHHH-----H--HhcCceEEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGELESGNAGEPAKLIRQRYREAADI-----I--KKGKMCCLMI 90 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~---i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~-----~--~~~~p~Il~I 90 (337)
-+.+||.||+|||||++++.+-..+.-.- ..++.+.. .+...+....+...+- . ..++..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 45699999999999999998877665432 12222210 1122222211110000 0 1346689999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-----CCCCceEEEEeCCCC---CCcchhccCCC
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS---TLYAPLIRDGR 162 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-----~~~~V~vI~TTN~~~---~ld~aLlR~gR 162 (337)
||+.--..... ..+....+|.++++. .|+|... .-.++.+|+++|... .|++.|+| .
T Consensus 107 DDlN~p~~d~y-------gtq~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKY-------GTQPPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TT-------S--HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCC-------CCcCHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99974332222 122334556556652 3555432 235788899988532 47888886 3
Q ss_pred ceEEEeC--CCHHHHHHHHHHhc
Q 019694 163 MEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 163 ~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
|- .+.+ |+.+....|+..++
T Consensus 172 f~-i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 172 FN-ILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp EE-EEE----TCCHHHHHHHHHH
T ss_pred eE-EEEecCCChHHHHHHHHHHH
Confidence 43 4555 99988888855554
No 227
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.25 E-value=2.6e-06 Score=86.68 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=72.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC----------CcEEecCC-----cc-----ccC--------CCCChHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI----------NPIMMSAG-----EL-----ESG--------NAGEPAKLIRQR 72 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~----------~~i~vs~s-----~l-----~~~--------~~Ge~~~~ir~~ 72 (337)
...++|.||||||||++++.++..+.- .++.+.+. .+ .+. .+|.....-...
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 457999999999999999999875431 11111111 00 000 111110000112
Q ss_pred HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccc-cCCCccccCCCCCceEEEEeCCCC
Q 019694 73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV-QLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~-~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
+ ......+|||||++.+- ..+...|++.+++.+.. .-.+. ......++.+|+|+|...
T Consensus 290 l-------~~A~gGvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~-~~~~pa~f~lIAa~NP~p 348 (506)
T PRK09862 290 I-------SLAHNGVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRA-KITYPARFQLVAAMNPSP 348 (506)
T ss_pred h-------hhccCCEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCc-ceeccCCEEEEEeecCcc
Confidence 2 23356799999997532 13445666666532211 11111 112245789999999642
Q ss_pred ---------------------CCcchhccCCCceEEEeC--CCHH
Q 019694 152 ---------------------TLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 152 ---------------------~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
.|..+++- |||..+++ |+.+
T Consensus 349 cG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 349 TGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred ceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 47778885 99999999 4444
No 228
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.25 E-value=1e-05 Score=79.57 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=86.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC----------------------------------------ccccC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG----------------------------------------ELESG 60 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s----------------------------------------~l~~~ 60 (337)
-.|+|+.|++|||||+++|++|.-|.--.+...+. .-.+.
T Consensus 38 iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDr 117 (423)
T COG1239 38 IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDR 117 (423)
T ss_pred cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhh
Confidence 37899999999999999999999774322222110 00111
Q ss_pred CCCC--hHHHHHH---HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCC-CccccCCCccc
Q 019694 61 NAGE--PAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN-PTCVQLPGMYN 134 (337)
Q Consensus 61 ~~Ge--~~~~ir~---~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~-~~~~~~~g~~~ 134 (337)
.+|. .++.+++ .|.- .++-+....||+|||+-.+. .++++ .|++.+.. .+.++..|. .
T Consensus 118 vvGslDi~ka~~~g~~af~P--GlLa~AnRGIlYvDEvnlL~------------d~lvd-~LLd~aaeG~n~vereGi-s 181 (423)
T COG1239 118 LVGSLDIEKALEEGPKAFQP--GLLARANRGILYVDEVNLLD------------DHLVD-ALLDVAAEGVNDVEREGI-S 181 (423)
T ss_pred hccccCHHHHHhcCccccCC--cchhhccCCEEEEecccccc------------HHHHH-HHHHHHHhCCceeeeCce-e
Confidence 1221 1111111 1111 13334455799999996542 12333 33344432 244455554 1
Q ss_pred cCCCCCceEEEEeCCCC-CCcchhccCCCceEEEeC---CCHHHHHHHHHHhccC
Q 019694 135 KEENPRVPIIVTGNDFS-TLYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFRN 185 (337)
Q Consensus 135 ~~~~~~V~vI~TTN~~~-~ld~aLlR~gR~d~~i~~---P~~~~R~~Il~~~~~~ 185 (337)
-....++++|+|+|-.+ .|=|.|+- ||...+.+ .+.++|.+|...-..-
T Consensus 182 i~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 182 IRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 22346789999999654 67778875 88877777 6789999998766654
No 229
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.23 E-value=2e-05 Score=74.86 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=105.4
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCcc--------------ccCCC
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGEL--------------ESGNA 62 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l--------------~~~~~ 62 (337)
......++..|...-+-++||+|++|.|||++++..+.... ++++.+....- ...+-
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 34455556666554555799999999999999999987542 34555543321 11111
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694 63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 142 (337)
Q Consensus 63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~ 142 (337)
+...+......+..+++...+.+|+|||+..++.... ...+.+.++|..+.+ .-+++
T Consensus 126 --~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~N---------------eL~ip 182 (302)
T PF05621_consen 126 --PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGN---------------ELQIP 182 (302)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhh---------------ccCCC
Confidence 1112234455556777888999999999988653221 112233333433322 23456
Q ss_pred EEEEeCC--CC--CCcchhccCCCceEEEeC---CCHHHHHHHHH---Hhc---cCCCCCHHHHHHHhcCCCchhhHhHH
Q 019694 143 IIVTGND--FS--TLYAPLIRDGRMEKFYWA---PTREDRIGVCK---GIF---RNDNVADDDIVKLVDTFPGQSIDFFG 209 (337)
Q Consensus 143 vI~TTN~--~~--~ld~aLlR~gR~d~~i~~---P~~~~R~~Il~---~~~---~~~~l~~~~la~l~~gf~gadl~~~~ 209 (337)
+|+.... .+ .-|+-+-+ ||+.+..- ++.+-+ .++. ..+ +..++...+++...-..++.-+.-+.
T Consensus 183 iV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~-~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFR-RLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred eEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHH-HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 6665432 11 22444544 77764433 444433 3332 222 23455556666555555544443322
Q ss_pred HHHhhhhHHHHHHHHHhhcCccchhhhhcC
Q 019694 210 ALRARVYDDEVRKWISGVGVGSIGKSLVNS 239 (337)
Q Consensus 210 alra~~~~~~i~~~i~~~~~~~~~~~~~~~ 239 (337)
.+-......+|+ -|.|.+....++.
T Consensus 260 ~ll~~aA~~AI~-----sG~E~It~~~l~~ 284 (302)
T PF05621_consen 260 RLLNAAAIAAIR-----SGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHh-----cCCceecHHHHhh
Confidence 222222222332 2667776655543
No 230
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.23 E-value=2.1e-06 Score=72.46 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=40.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
..-|||+|+|||||+++|+++....+. +|+.+++..+- .+.+.. .....|||+|||.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~-------a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQ-------AKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHH-------CTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHH-------cCCCEEEECChHHCC
Confidence 445899999999999999999887653 44444444321 233333 378899999999764
No 231
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=1.2e-05 Score=69.59 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.+.-|+++|+||+|||+++.-++..+.
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35567799999999999999999998774
No 232
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.22 E-value=2e-05 Score=72.66 Aligned_cols=141 Identities=15% Similarity=0.086 Sum_probs=80.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
..-.|-.++||+|||||..++.+|+.+|..++..++++-. ....+.++|.-+ - ...+-+.|||++.+-.
T Consensus 30 ~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~----~-~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 30 SLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGL----A-QSGAWLCFDEFNRLSE 98 (231)
T ss_dssp CTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH----H-HHT-EEEEETCCCSSH
T ss_pred ccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHH----h-hcCchhhhhhhhhhhH
Confidence 3456778999999999999999999999999999998643 235556666554 2 2357899999997642
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCH
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
. .-.+..+.+......+..+...+.+.|... .-....-+.+|.| ....||+.|..- =+.+.+ ||.
T Consensus 99 ~-----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~l---FRpvam~~PD~ 169 (231)
T PF12774_consen 99 E-----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKAL---FRPVAMMVPDL 169 (231)
T ss_dssp H-----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCTT---EEEEE--S--H
T ss_pred H-----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHHH---hheeEEeCCCH
Confidence 1 122333334433333344444444444311 1233455666777 345789888753 334444 988
Q ss_pred HHHHHHH
Q 019694 173 EDRIGVC 179 (337)
Q Consensus 173 ~~R~~Il 179 (337)
....+++
T Consensus 170 ~~I~ei~ 176 (231)
T PF12774_consen 170 SLIAEIL 176 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777765
No 233
>PRK15115 response regulator GlrR; Provisional
Probab=98.18 E-value=3.8e-06 Score=83.97 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCce
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 86 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 86 (337)
...++|+|++|||||++|+++.... +.+|+.+++..+.... .-..+|..+. .........
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3458999999999999999998765 4689999988653211 1112332210 011233567
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc---
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 163 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~--- 163 (337)
.|||||||.+.. ..+..|+..+++.....+.+. .....++.+|+||+.. ++. ++..|+|
T Consensus 231 tl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~ 292 (444)
T PRK15115 231 TLFLDEIGDMPA-------------PLQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRED 292 (444)
T ss_pred EEEEEccccCCH-------------HHHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHH
Confidence 899999997643 223445555553222111111 1123477899999853 443 3445666
Q ss_pred ------eEEEeCCCHHHHH
Q 019694 164 ------EKFYWAPTREDRI 176 (337)
Q Consensus 164 ------d~~i~~P~~~~R~ 176 (337)
...+.+|...+|.
T Consensus 293 l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERT 311 (444)
T ss_pred HHHhhceeeecCCChHhcc
Confidence 4455668888873
No 234
>PHA02624 large T antigen; Provisional
Probab=98.18 E-value=1.1e-05 Score=83.06 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|++..+.+||+||||||||+++.++++.++-..+.++++.-. ..|... -...--+++|||+-
T Consensus 425 l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k------------s~FwL~----pl~D~~~~l~dD~t 488 (647)
T PHA02624 425 VENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK------------LNFELG----CAIDQFMVVFEDVK 488 (647)
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch------------hHHHhh----hhhhceEEEeeecc
Confidence 34666667999999999999999999999996666777654211 122222 22334588999985
Q ss_pred cccccCC--CCcccchhhHhHH--HHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC
Q 019694 95 AGAGRMG--GTTQYTVNNQMVN--ATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 169 (337)
Q Consensus 95 ~l~~~~~--~~~~~~~~~~~v~--~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~ 169 (337)
.-+.... ...+ -+. .-|.+.+|.--.|+++-.... ....=-|.|+|||.. .||.-+.- ||-+.+.+
T Consensus 489 ~~~~~~~~Lp~G~------~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf~~~~~F 559 (647)
T PHA02624 489 GQPADNKDLPSGQ------GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RFAKVLDF 559 (647)
T ss_pred ccccccccCCccc------ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HHHHhccc
Confidence 3332110 0001 111 334555662212222221111 111123899999975 47777764 88888887
Q ss_pred -CCHHHHHHH
Q 019694 170 -PTREDRIGV 178 (337)
Q Consensus 170 -P~~~~R~~I 178 (337)
|..--+..+
T Consensus 560 ~~k~~l~~sL 569 (647)
T PHA02624 560 KPKPYLKKSL 569 (647)
T ss_pred cccHHHHHHH
Confidence 665554443
No 235
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.18 E-value=1.6e-05 Score=66.25 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=37.1
Q ss_pred hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+++...++.++..+.-+.|+-+-|+|+||||||++++.||+.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3566777888887777888999999999999999999999985
No 236
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.13 E-value=2.3e-06 Score=82.99 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~-----l---------~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
...|||.|.||||||.|.+.+++-....+ .+++.. | ..+|.-+.+ .+-.| ...
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaG-----alvla-------d~G 123 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAG-----ALVLA-------DGG 123 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE------HHHHC-------TTS
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCC-----chhcc-------cCc
Confidence 45799999999999999998865443333 332222 1 111222221 22222 668
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-------------C
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------T 152 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ 152 (337)
|++|||+|++-.. ....|.+.++.++ .+.-.|. ......+.-|++++|-.. .
T Consensus 124 iccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 124 ICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp EEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred eeeecccccccch-------------HHHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 9999999986321 1234555555332 1111121 112356778999999665 4
Q ss_pred CcchhccCCCceEEEeC---CCHHHHHHHHHHhcc
Q 019694 153 LYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFR 184 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~---P~~~~R~~Il~~~~~ 184 (337)
++++|+. |||.++.+ |+.+.-..|...++.
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 8889986 99999887 776666666555554
No 237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.12 E-value=2e-05 Score=70.81 Aligned_cols=83 Identities=13% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC--------CCCC-----------hHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG--------NAGE-----------PAKLIRQRY 73 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~--------~~Ge-----------~~~~ir~~f 73 (337)
.|++....++++||||+|||+++..++... +...+.++..++... +.+. ........+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 577888899999999999999999887643 556777776541000 0000 000011123
Q ss_pred HHHHHHHHhcCceEEEecccccccc
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
....+++.+..+.+|+||-|.++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3333444566899999999998763
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.12 E-value=2.4e-06 Score=69.71 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
|+|.||||+||||+|+.+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776654
No 239
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.12 E-value=5.7e-05 Score=67.66 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
....++|+||.|+|||+|++.+.+.+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 45789999999999999999999988
No 240
>PHA02774 E1; Provisional
Probab=98.11 E-value=1.6e-05 Score=81.46 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE-ecCCccccCCCCChHHHHHHHHHHHHHHHHhc
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKG 83 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~-vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~ 83 (337)
+...+|+++ .+++....++||||||||||++|-++++.++-..+. ++.. +.+- +..+ .
T Consensus 420 fl~~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~Fw----------Lqpl------~ 478 (613)
T PHA02774 420 FLTALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHFW----------LQPL------A 478 (613)
T ss_pred HHHHHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---cccc----------cchh------c
Confidence 344566665 344444589999999999999999999998755443 4431 1110 1111 1
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc-cCCCCCceEEEEeCCCCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-~~~~~~V~vI~TTN~~~~ld 154 (337)
.-.|++|||+-. . ....+...|.+++|.- .+.++-... ......-|+|+|||---.-+
T Consensus 479 d~ki~vlDD~t~---------~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~~~ 537 (613)
T PHA02774 479 DAKIALLDDATH---------P---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVKAE 537 (613)
T ss_pred cCCEEEEecCcc---------h---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcccc
Confidence 224899999811 0 1234455677888832 233332211 12234569999999443333
No 241
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.00011 Score=73.21 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=105.5
Q ss_pred HHHHhhhhc-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCcccc--------------CCCCCh
Q 019694 6 VHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELES--------------GNAGEP 65 (337)
Q Consensus 6 ~~i~k~~l~-~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~--------------~~~Ge~ 65 (337)
..++++|+. ......+..+.+.|-||||||.+..-+-..+. ...+++++.++-. ...+.+
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 467778876 34567788899999999999998887655442 2345666654311 111221
Q ss_pred -HHHHHHHHHHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694 66 -AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 143 (337)
Q Consensus 66 -~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v 143 (337)
+......|.. -.. ...|-++++||+|.++.+.. .. + -+| -.|..-...++++
T Consensus 239 ~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~-~v--------L-y~l-------------Fewp~lp~sr~iL 292 (529)
T KOG2227|consen 239 TGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQ-TV--------L-YTL-------------FEWPKLPNSRIIL 292 (529)
T ss_pred hhHHHHHHHHH---HHhcccceEEEEechhhHHhhccc-ce--------e-eee-------------hhcccCCcceeee
Confidence 1111222222 112 23588999999999885443 11 1 111 1456677889999
Q ss_pred EEEeCCCCCCcchhccCCCce-----EEEeC--CCHHHHHHHHHHhccCCCCCH------HHHHHHhcCCCc
Q 019694 144 IVTGNDFSTLYAPLIRDGRME-----KFYWA--PTREDRIGVCKGIFRNDNVAD------DDIVKLVDTFPG 202 (337)
Q Consensus 144 I~TTN~~~~ld~aLlR~gR~d-----~~i~~--P~~~~R~~Il~~~~~~~~l~~------~~la~l~~gf~g 202 (337)
|+.+|..+.=|..|.|- +.| +.+.+ .+.++..+|++.-+....... +-.|+.+.+-+|
T Consensus 293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 99999998777766531 221 23333 789999999988887654332 445666666665
No 242
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.08 E-value=9.1e-06 Score=81.92 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=77.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 85 (337)
....+|++|++|||||++|+++.... +.+|+.++++.+... ..-..+|.... ..+.....
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 34569999999999999999998875 468999999876221 11122332110 00112246
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhc
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 158 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLl 158 (337)
..|||||||.+.. .++..|+.++++.+....++. .....++.||+||+.. ..+.+.|.
T Consensus 234 Gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 234 GTLFLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CEEEEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 6899999997642 223445555553322222222 1123467899998753 13334444
Q ss_pred cCCCc-eEEEeCCCHHHHH
Q 019694 159 RDGRM-EKFYWAPTREDRI 176 (337)
Q Consensus 159 R~gR~-d~~i~~P~~~~R~ 176 (337)
. |+ ...+.+|...+|.
T Consensus 299 ~--~l~~~~i~~PpLreR~ 315 (469)
T PRK10923 299 H--RLNVIRVHLPPLRERR 315 (469)
T ss_pred H--HhcceeecCCCcccch
Confidence 3 44 3556667766653
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.08 E-value=4.1e-05 Score=67.01 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=24.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
+|++||||||||+++..++.+. |.+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999999876643 5566666543
No 244
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.06 E-value=2.1e-05 Score=78.83 Aligned_cols=131 Identities=15% Similarity=0.233 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCce
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 86 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 86 (337)
...+|++|++||||+++|+++.... +.+|+.+++..+... ..-..+|.... .........
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 4569999999999999999997764 468999998866321 11112222110 011223467
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce--
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-- 164 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d-- 164 (337)
+|||||||.+.. .++..|+.++++......++. .....++.||+|||..- ..+.+.|+|.
T Consensus 240 tl~ld~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~ 301 (457)
T PRK11361 240 TLLLDEIGEMPL-------------VLQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED 301 (457)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 899999997642 223445556553221111221 11234678999998531 1334445543
Q ss_pred -------EEEeCCCHHHH
Q 019694 165 -------KFYWAPTREDR 175 (337)
Q Consensus 165 -------~~i~~P~~~~R 175 (337)
..+.+|...+|
T Consensus 302 l~~~l~~~~i~~ppLreR 319 (457)
T PRK11361 302 LFYRLNVIHLILPPLRDR 319 (457)
T ss_pred HHHHhccceecCCChhhc
Confidence 23444777766
No 245
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.05 E-value=4.2e-06 Score=84.51 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc-----ccCCCCChHHHHHHHHHHHHH-----HHHhc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-----ESGNAGEPAKLIRQRYREAAD-----IIKKG 83 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l-----~~~~~Ge~~~~ir~~f~~A~~-----~~~~~ 83 (337)
..+.+..|||.|++||||..+|++|-+.. +-+|+.++|+-+ .|..+|-. ...|.-|.. +....
T Consensus 264 ~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye----~GAFTGA~~~GK~GlfE~A 339 (560)
T COG3829 264 IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE----KGAFTGASKGGKPGLFELA 339 (560)
T ss_pred hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC----CccccccccCCCCcceeec
Confidence 45678889999999999999999997765 469999999864 23323221 122333300 00001
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 163 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~ 163 (337)
...-||+|||-.+- ..++.-|+.++..-+...+.|. ....-+|-||+|||+. + ..++..|+|
T Consensus 340 ~gGTLFLDEIgemp-------------l~LQaKLLRVLQEkei~rvG~t--~~~~vDVRIIAATN~n--L-~~~i~~G~F 401 (560)
T COG3829 340 NGGTLFLDEIGEMP-------------LPLQAKLLRVLQEKEIERVGGT--KPIPVDVRIIAATNRN--L-EKMIAEGTF 401 (560)
T ss_pred cCCeEEehhhccCC-------------HHHHHHHHHHHhhceEEecCCC--CceeeEEEEEeccCcC--H-HHHHhcCcc
Confidence 44679999995432 2445556666665444444443 2234578999999973 1 223445554
No 246
>PHA00729 NTP-binding motif containing protein
Probab=98.03 E-value=6.6e-06 Score=75.41 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
..|+|+|+||||||+||.+++++++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999998643
No 247
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.02 E-value=6.3e-06 Score=71.17 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.+|..|+|+|+||||||++|+.+|+.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4577899999999999999999999999887743
No 248
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=74.77 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=60.0
Q ss_pred hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCC----hHHHH----HHHHH
Q 019694 3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE----PAKLI----RQRYR 74 (337)
Q Consensus 3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge----~~~~i----r~~f~ 74 (337)
.++++.+|.|+..+.-+.|.-+-|||+|||||++.++.||+.+-..- ..|.+...|++. .++.| .++-.
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP~~~~ie~Yk~eL~~ 168 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFPHASKIEDYKEELKN 168 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCCChHHHHHHHHHHHH
Confidence 45677788888888888899999999999999999999999762110 001111111111 01111 12223
Q ss_pred HHHHHHHhcCceEEEeccccccc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
+..+.+...+.+|.++||+|++-
T Consensus 169 ~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 169 RVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHhcCCceEEechhhhcC
Confidence 33344468889999999999863
No 249
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.99 E-value=1.5e-05 Score=78.46 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=49.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCC-----C-cEEecCCc---------------cccCCCCChHHHHH---HHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAADI 79 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~-----~-~i~vs~s~---------------l~~~~~Ge~~~~ir---~~f~~A~~~ 79 (337)
.||.||||+|||+|++.|++.... . ++.+...- +.+.+-..+...++ .....|...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999987643 2 22332221 23334344444444 455556555
Q ss_pred HHhcCceEEEeccccccc
Q 019694 80 IKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~ 97 (337)
...++..+||||||..+.
T Consensus 252 ~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 252 VEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHcCCCEEEEEEChHHHH
Confidence 557889999999998765
No 250
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.98 E-value=1.4e-05 Score=80.30 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=66.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc-----ccCCCCChH-------HHHHHHHHHHHHHHHhcC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL-----ESGNAGEPA-------KLIRQRYREAADIIKKGK 84 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l-----~~~~~Ge~~-------~~ir~~f~~A~~~~~~~~ 84 (337)
...-||++|++||||-.+|++|-+... -||+.++++.+ .+..+|... ..-...|+.| .
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A-------~ 235 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA-------N 235 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEc-------C
Confidence 345699999999999999999977654 59999999865 222333110 0001244444 6
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 149 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~ 149 (337)
...||||||..+.- .++.-|+.++...+...+.|. ..-.-+|-||++||.
T Consensus 236 GGTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~ 285 (464)
T COG2204 236 GGTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNR 285 (464)
T ss_pred CceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCc
Confidence 77899999975431 223334444443322233332 122457889999996
No 251
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.96 E-value=9e-06 Score=68.09 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
|++.||||+||||+|+.+++.++ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999999 4445555543
No 252
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.96 E-value=0.00032 Score=65.88 Aligned_cols=144 Identities=19% Similarity=0.353 Sum_probs=87.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-C--CCcEEecCCc-------------ccc--------CCCCChHH-HHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM-G--INPIMMSAGE-------------LES--------GNAGEPAK-LIRQRYREAA 77 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l-~--~~~i~vs~s~-------------l~~--------~~~Ge~~~-~ir~~f~~A~ 77 (337)
.+|+|||+|+||.|.+-++-+++ | ++-..+...+ +.+ ...|...+ .|.++.++.+
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 68999999999999999998876 3 2111111111 111 13444433 3445555543
Q ss_pred HHHH-----hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694 78 DIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 152 (337)
Q Consensus 78 ~~~~-----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ 152 (337)
+... +..-.||+|.|.|.+.... |. .+..|. . .-.+.+-+|..+|..+.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dA----Q~-----aLRRTM----E-------------kYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDA----QH-----ALRRTM----E-------------KYSSNCRLILVCNSTSR 169 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHH----HH-----HHHHHH----H-------------HHhcCceEEEEecCccc
Confidence 2111 2234689999999874321 11 111111 1 23456789999999999
Q ss_pred CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-HHHHH
Q 019694 153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-DDIVK 195 (337)
Q Consensus 153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-~~la~ 195 (337)
+-+|+.. |+- .+.+ |+.++...++...+.++++.. +++++
T Consensus 170 iIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 170 IIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred chhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 9999875 422 2333 999999999999998886654 44433
No 253
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.96 E-value=3.2e-05 Score=77.42 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcCce
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 86 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~ 86 (337)
...++|+|++||||+++|+++.... +.+|+.++++.+... ..-..+|... .+.+......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 4568999999999999999997765 458999998865221 1111223211 0011223567
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhcc
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 159 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLlR 159 (337)
.|||||||.+.. .++..|+.++.......+.+. .....++.+|+||+.. ..+.+.|..
T Consensus 236 tl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 300 (445)
T TIGR02915 236 TLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300 (445)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence 899999997642 233445555542211111111 1123467888988764 222333321
Q ss_pred CCCce-EEEeCCCHHHHHH
Q 019694 160 DGRME-KFYWAPTREDRIG 177 (337)
Q Consensus 160 ~gR~d-~~i~~P~~~~R~~ 177 (337)
|+. ..+.+|...+|.+
T Consensus 301 --~l~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 301 --RIAEISITIPPLRSRDG 317 (445)
T ss_pred --HhccceecCCCchhchh
Confidence 222 3455588777743
No 254
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=4.3e-05 Score=77.29 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=36.2
Q ss_pred HHhhhhc-----CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 8 ITKNFMS-----LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 8 i~k~~l~-----~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
-++.||+ .++.+ -+.+||+||+||||||.++.+++++|+.++.-+
T Consensus 93 eVk~WL~~~~~~~~~l~-~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 93 EVKQWLKQVAEFTPKLG-SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred HHHHHHHHHHHhccCCC-ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 4567777 34432 468999999999999999999999999887665
No 255
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.94 E-value=8.8e-06 Score=76.72 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 77 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~ 77 (337)
.-+++||.||||||||.||-++++++| +||..+.+|++.+..+-.++-+ -+-|++|.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI 121 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI 121 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence 357999999999999999999999996 6899999999988877776544 46677774
No 256
>PRK08118 topology modulation protein; Reviewed
Probab=97.94 E-value=3e-05 Score=67.82 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=30.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
+-|++.||||+||||+|+.+++.++++++.++.-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 3589999999999999999999999998877643
No 257
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.93 E-value=5.3e-06 Score=72.79 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l 45 (337)
|+|+|+||+||||+++.+.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999888
No 258
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.93 E-value=2.8e-05 Score=70.78 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
.|++....++++||||+|||++|..+|.+. +...+.++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 577778889999999999999999998744 6667777665
No 259
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.90 E-value=2.7e-05 Score=68.26 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
.+.|+|.|+||+||||+|+.++++++..++.++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 35799999999999999999999988777655544
No 260
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.89 E-value=3.8e-05 Score=71.60 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCC---c-------c-----ccCCCCChHHHH---HHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-------L-----ESGNAGEPAKLI---RQRYRE 75 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s---~-------l-----~~~~~Ge~~~~i---r~~f~~ 75 (337)
...-++|.||+|+|||+|++.+++.+... ++.+... + + .+.+-..+...+ ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34568899999999999999999987542 2232222 1 1 222222222222 244444
Q ss_pred HHHHHHhcCceEEEeccccccc
Q 019694 76 AADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 76 A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
|......++..+|||||+..+.
T Consensus 95 a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhh
Confidence 5444446889999999998764
No 261
>PRK07261 topology modulation protein; Provisional
Probab=97.89 E-value=3.6e-05 Score=67.54 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=32.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 64 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge 64 (337)
-|++.|+||+||||||+.++..++.+.+..+.-.....+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~ 43 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQER 43 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccC
Confidence 378999999999999999999999988776544333334333
No 262
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.89 E-value=7e-06 Score=82.50 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH-------H----HHHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A----ADIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~-------A----~~~~~~~~p 85 (337)
.+..+++.|++||||+++|+++.... +.+|+.++++.+.+.+. -..+|.. + .+.......
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADG 229 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCC
Confidence 34568999999999999999998764 46899999886522110 1112221 1 001123356
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce-
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME- 164 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d- 164 (337)
..|||||||.+.. .++..|+++++........+. .....++.||+|||..- ..+++.|+|.
T Consensus 230 gtl~l~ei~~l~~-------------~~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l---~~~~~~~~f~~ 291 (463)
T TIGR01818 230 GTLFLDEIGDMPL-------------DAQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNL---EALVRQGKFRE 291 (463)
T ss_pred CeEEEEchhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCH---HHHHHcCCcHH
Confidence 7899999997642 123445555552211111111 11233567888887542 1223334443
Q ss_pred --------EEEeCCCHHHH
Q 019694 165 --------KFYWAPTREDR 175 (337)
Q Consensus 165 --------~~i~~P~~~~R 175 (337)
..+.+|...+|
T Consensus 292 ~L~~rl~~~~i~lPpLr~R 310 (463)
T TIGR01818 292 DLFHRLNVIRIHLPPLRER 310 (463)
T ss_pred HHHHHhCcceecCCCcccc
Confidence 35666776655
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.88 E-value=0.00013 Score=73.69 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC------CCC--------hHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAAD 78 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~------~Ge--------~~~~ir~~f~~A~~ 78 (337)
.|+.+...+||+|+||+|||+|+..+|... +..++.++..+-.... .|. .+..+..++ +
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~ 150 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----A 150 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----H
Confidence 377888889999999999999999998765 5667777765321110 010 001112222 3
Q ss_pred HHHhcCceEEEecccccccc
Q 019694 79 IIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~~ 98 (337)
.++...|.+|+||+|-.+..
T Consensus 151 ~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHhhCCCEEEEechhhhcc
Confidence 33667899999999987753
No 264
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=5.2e-05 Score=72.09 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE--------EecCCcc--ccCCCCC----hHHHHHHHHHHHHHHHHh
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGEL--ESGNAGE----PAKLIRQRYREAADIIKK 82 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i--------~vs~s~l--~~~~~Ge----~~~~ir~~f~~A~~~~~~ 82 (337)
.-+.|.+.||+||+|+||+.+|.++|+.+-..-- .-+-+++ ... .|. +...+|++-+.+...-..
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~~~~~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QGKGRLHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CCCCCcCcHHHHHHHHHHHhhCccC
Confidence 3477899999999999999999999998743210 0001111 000 111 233455554444111124
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCC
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 162 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR 162 (337)
+.-.|++||++|.+... ....|+..++ ++..++.+|..|+.++.|.|.++. |
T Consensus 94 ~~~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--R 145 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--R 145 (290)
T ss_pred CCceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--c
Confidence 55679999999976421 1234444555 567788999999999999999875 4
Q ss_pred ceE
Q 019694 163 MEK 165 (337)
Q Consensus 163 ~d~ 165 (337)
+-.
T Consensus 146 cq~ 148 (290)
T PRK05917 146 SLS 148 (290)
T ss_pred ceE
Confidence 444
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.88 E-value=5e-05 Score=73.24 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=54.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge--------~~~~ir~~f~~A~~~~ 80 (337)
.|++.-..++|+||||||||+||..++.+. |...+.++..+-.+. ..|- ......+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 477777889999999999999988765543 556666654331110 0010 0011233444555566
Q ss_pred HhcCceEEEeccccccccc
Q 019694 81 KKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~~ 99 (337)
+...+.+|+||-+-++..+
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 7889999999999887754
No 266
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.87 E-value=7.3e-05 Score=72.16 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
..+|+|+.|||+-|+|||+|.-.....+..+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 4588999999999999999999999887653
No 267
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.86 E-value=2.3e-05 Score=74.55 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=76.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCCccccCCCCChHHHHHHHHHHHHH-HHHh--cCceEEEeccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAAD-IIKK--GKMCCLMINDL 93 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~-~~~~--~~p~Il~IDEi 93 (337)
.+|+|||||||||+...++|..+-.+ +..++.|+-.+- +-. +.-...|..+.. .+-+ ..+..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi--d~v-r~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI--DPV-RQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC--cch-HHHHHHHHhhccceeccccCceeEEEecch
Confidence 89999999999999999999987542 112233321111 111 111134444411 0012 37889999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCH
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTR 172 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~ 172 (337)
|++..... ..|...+. ....++-++..+|.+..+.||++. ||.++-+- -+.
T Consensus 141 DaMT~~AQ-------------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~ 192 (360)
T KOG0990|consen 141 DAMTRDAQ-------------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTM 192 (360)
T ss_pred hHhhHHHH-------------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCCh
Confidence 98743211 11111111 223455677889999999999874 66665444 334
Q ss_pred HHHHHHHHHhccCC
Q 019694 173 EDRIGVCKGIFRND 186 (337)
Q Consensus 173 ~~R~~Il~~~~~~~ 186 (337)
+.-..++..+...+
T Consensus 193 ~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 193 AQQTERQSHIRESE 206 (360)
T ss_pred hhhhhHHHHHHhcc
Confidence 44455555555544
No 268
>PRK13947 shikimate kinase; Provisional
Probab=97.84 E-value=5.9e-05 Score=65.39 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=32.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 65 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~ 65 (337)
.|+|.|+||||||++++.+|+.+|++|+..+ .+.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence 4899999999999999999999999987554 3444444544
No 269
>PRK06762 hypothetical protein; Provisional
Probab=97.83 E-value=2.8e-05 Score=67.26 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
|..|+|.|+||+||||+|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 67899999999999999999999997667677665554
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.81 E-value=2.5e-05 Score=71.43 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA 42 (337)
.|.-+|+||+||+|||++|+.++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 36779999999999999999986
No 271
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.80 E-value=0.00021 Score=70.38 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------CCCC--------hHHHHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAADI 79 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------~~Ge--------~~~~ir~~f~~A~~~ 79 (337)
|+.+...+||+|+||+|||+|+..+|..+ +.+++.++..+-... ..|. .+..+..+++ .
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~----~ 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA----S 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----H
Confidence 67777889999999999999999988764 345666665431110 0010 0111222333 3
Q ss_pred HHhcCceEEEecccccccc
Q 019694 80 IKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~ 98 (337)
+...+|.+|+||+|..+..
T Consensus 154 i~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HHhcCCcEEEEcchHHhhc
Confidence 3677999999999987753
No 272
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.79 E-value=0.00059 Score=70.95 Aligned_cols=143 Identities=10% Similarity=0.002 Sum_probs=80.9
Q ss_pred HhhhhcCCCCCC-C-cEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCCChHHHHHHHHHHH-----HHH
Q 019694 9 TKNFMSLPNIKV-P-LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADI 79 (337)
Q Consensus 9 ~k~~l~~~g~~~-p-~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----~~~ 79 (337)
+|.-|.+.-+.| - .||||.|++|||||+++++++.-+.. +|+.+..+-=.+..+|.. -|....... -.+
T Consensus 11 ~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGl 88 (584)
T PRK13406 11 AALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGL 88 (584)
T ss_pred HHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCc
Confidence 344444444554 2 68999999999999999999998754 777665554344444432 011111110 011
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCC---CCCcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDF---STLYA 155 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~---~~ld~ 155 (337)
+......|||+||+..+-. -+...|++-++.-. .++-+|. ......+.++|+|-|.. ..|++
T Consensus 89 la~Ah~GvL~lDe~n~~~~-------------~~~~aLleame~G~vtIeR~G~-s~~~Pa~F~LIat~~~~~~~~~L~~ 154 (584)
T PRK13406 89 LAEADGGVLVLAMAERLEP-------------GTAARLAAALDTGEVRLERDGL-ALRLPARFGLVALDEGAEEDERAPA 154 (584)
T ss_pred eeeccCCEEEecCcccCCH-------------HHHHHHHHHHhCCcEEEEECCc-EEecCCCcEEEecCCChhcccCCCH
Confidence 1222457999999964321 23345555555211 1111222 01123456777764322 45899
Q ss_pred hhccCCCceEEEeC
Q 019694 156 PLIRDGRMEKFYWA 169 (337)
Q Consensus 156 aLlR~gR~d~~i~~ 169 (337)
+++- ||+..+.+
T Consensus 155 ~lLD--Rf~l~v~v 166 (584)
T PRK13406 155 ALAD--RLAFHLDL 166 (584)
T ss_pred HhHh--heEEEEEc
Confidence 9985 99999999
No 273
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.78 E-value=0.00017 Score=64.86 Aligned_cols=23 Identities=22% Similarity=-0.025 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
-+.++|+||+|+|||++.+.++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 36899999999999999999974
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.78 E-value=0.00019 Score=69.34 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=54.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccC----CCC---------ChHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAG---------EPAKLIRQRYREAADI 79 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~----~~G---------e~~~~ir~~f~~A~~~ 79 (337)
.|++.-+.++++||||||||+||-.++.+ .|...+.++...-.+. ..| .+ ....+.+..+..+
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p-~~~eq~l~i~~~l 128 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQP-DTGEQALEIADSL 128 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCC-CCHHHHHHHHHHH
Confidence 36777788999999999999999987654 3566666665331110 001 00 0122344455556
Q ss_pred HHhcCceEEEeccccccccc
Q 019694 80 IKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~ 99 (337)
+++..+.+|+||-+-++.++
T Consensus 129 i~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 129 VRSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred HhccCCCEEEEcchHhhccc
Confidence 67889999999999888754
No 275
>PRK03839 putative kinase; Provisional
Probab=97.77 E-value=2.2e-05 Score=68.96 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.|+|.|+||+||||+++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999999887654
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.77 E-value=0.00011 Score=67.28 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCcccc--------------CC-----C----------C
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES--------------GN-----A----------G 63 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~--------------~~-----~----------G 63 (337)
.|++....++++|+||+|||+++..++.+ .|...+.++..+-.. ++ . .
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 48888899999999999999999998654 255555555432100 00 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
........++......++...|.+|+||++-.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0011224555666566677789999999997653
No 277
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00057 Score=65.41 Aligned_cols=139 Identities=8% Similarity=0.089 Sum_probs=82.6
Q ss_pred HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------cEEecCCccccCCCCCh--HHHH
Q 019694 5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------PIMMSAGELESGNAGEP--AKLI 69 (337)
Q Consensus 5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------~i~vs~s~l~~~~~Ge~--~~~i 69 (337)
+....+|-++. -+.+...||+|+.|.||+.+++.+++.+-.. ++.++. .|.. ...|
T Consensus 4 ~~~~l~~~i~~--~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~-------~g~~i~vd~I 74 (299)
T PRK07132 4 WIKFLDNSATQ--NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI-------FDKDLSKSEF 74 (299)
T ss_pred HHHHHHHHHHh--CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc-------CCCcCCHHHH
Confidence 33444444433 2567889999999999999999999987221 111210 0121 1234
Q ss_pred HHHHHHHHHHH-HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC
Q 019694 70 RQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 148 (337)
Q Consensus 70 r~~f~~A~~~~-~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN 148 (337)
+++-+...-.. ..+...|++||++|++... . ...|+..++ ++...+.+|.+|+
T Consensus 75 r~l~~~~~~~~~~~~~~KvvII~~~e~m~~~------------a-~NaLLK~LE-------------EPp~~t~~il~~~ 128 (299)
T PRK07132 75 LSAINKLYFSSFVQSQKKILIIKNIEKTSNS------------L-LNALLKTIE-------------EPPKDTYFLLTTK 128 (299)
T ss_pred HHHHHHhccCCcccCCceEEEEecccccCHH------------H-HHHHHHHhh-------------CCCCCeEEEEEeC
Confidence 44333330000 0147789999999865211 1 224444545 4566778888888
Q ss_pred CCCCCcchhccCCCceEEEeC--CCHHHHHHHHHH
Q 019694 149 DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKG 181 (337)
Q Consensus 149 ~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~ 181 (337)
.++.|.+.+.. |+-. +.+ |+.++..+.+..
T Consensus 129 ~~~kll~TI~S--Rc~~-~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 129 NINKVLPTIVS--RCQV-FNVKEPDQQKILAKLLS 160 (299)
T ss_pred ChHhChHHHHh--CeEE-EECCCCCHHHHHHHHHH
Confidence 89999998875 4433 444 667777766653
No 278
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.75 E-value=0.00033 Score=63.74 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA 42 (337)
++.++|+||.|+|||++.+.++
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999997
No 279
>PLN02200 adenylate kinase family protein
Probab=97.74 E-value=3.4e-05 Score=71.21 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=33.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
++.+.|..|+|.||||+|||++|+.+|+++|+. .++.+++.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 355678889999999999999999999999864 56666554
No 280
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.74 E-value=0.00012 Score=62.02 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=26.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
++|.|+||+|||++|+.+++.++..++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 789999999999999999999887554 444443
No 281
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.73 E-value=3.9e-05 Score=76.90 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc-----ccCCCCChHHHHHHHHHHHHHHHH----hcCc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-----ESGNAGEPAKLIRQRYREAADIIK----KGKM 85 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l-----~~~~~Ge~~~~ir~~f~~A~~~~~----~~~p 85 (337)
.+....|||.|+.||||-.+||+|-+.. +-+|+.+|++-+ .|..+|.- +..|.-|...-+ -...
T Consensus 243 A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe----KGAFTGA~~~r~GrFElAdG 318 (550)
T COG3604 243 AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE----KGAFTGAINTRRGRFELADG 318 (550)
T ss_pred hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc----ccccccchhccCcceeecCC
Confidence 3456789999999999999999997765 458999999875 23333321 223333310000 1145
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 164 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d 164 (337)
.-||+|||-.+-- .++.-|+..+.+.+-..+.|. ..-.-.|-||++||+ +|-.+ .|.|+|-
T Consensus 319 GTLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNR--DL~~~-V~~G~FR 379 (550)
T COG3604 319 GTLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNR--DLEEM-VRDGEFR 379 (550)
T ss_pred CeEechhhccCCH-------------HHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccch--hHHHH-HHcCcch
Confidence 6799999943321 234445555553333333332 112346789999997 23332 3455553
No 282
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.71 E-value=3.4e-05 Score=65.37 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
|+|+|+||+|||++|+.+|+.++++++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999877544
No 283
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.70 E-value=2.9e-05 Score=66.42 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=29.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
.||++|-||||||+++..+|..++++++.++.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 48899999999999999999999999887763
No 284
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.70 E-value=3.4e-05 Score=67.68 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=27.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
|++.||||+||||+|+.+|+++++ ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999985 455555443
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.69 E-value=0.00015 Score=65.56 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
.|+.....++++|+||+|||++|..+|.+. +.+.+.++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 478778889999999999999999998765 4566666543
No 286
>PRK00625 shikimate kinase; Provisional
Probab=97.69 E-value=3.7e-05 Score=67.82 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
-|+|.|.||+|||++++.+|++++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999988775
No 287
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.69 E-value=0.00014 Score=62.70 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
|+|.||||+|||++|+.+++.++..++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986554 44444
No 288
>PRK08233 hypothetical protein; Provisional
Probab=97.69 E-value=0.00017 Score=62.78 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+..|.+.|+||+||||+|+.++..++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999999986
No 289
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.68 E-value=0.00011 Score=73.24 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCce
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 86 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 86 (337)
...++++|.+||||+++|+++.... +.+|+.++++.+.... .-..+|.... ..+.....+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL------LESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH------HHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4669999999999999999997654 4689999998653211 1112222110 011233578
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce--
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-- 164 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d-- 164 (337)
.|||||||.+... .+..|+..++........+. .....++.+|+||+..- ..++.+|+|.
T Consensus 236 tl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~~ 297 (441)
T PRK10365 236 TLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQD 297 (441)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999986432 22334444442221111111 11223567888887632 2344566663
Q ss_pred -------EEEeCCCHHHH
Q 019694 165 -------KFYWAPTREDR 175 (337)
Q Consensus 165 -------~~i~~P~~~~R 175 (337)
..+.+|...+|
T Consensus 298 l~~~l~~~~i~~ppLreR 315 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQR 315 (441)
T ss_pred HHHHhccceecCCChhhc
Confidence 45555777666
No 290
>PRK14531 adenylate kinase; Provisional
Probab=97.67 E-value=4.8e-05 Score=67.25 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
++-|++.||||+|||++++.+|+.+|+..+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 3458999999999999999999999876554
No 291
>PRK13695 putative NTPase; Provisional
Probab=97.67 E-value=0.0003 Score=61.51 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
-++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988765
No 292
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.67 E-value=4e-05 Score=67.88 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=28.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 59 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~ 59 (337)
-|+|.||||+||||+|+.+|+. .++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4789999999999999999999 4456666655543
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.66 E-value=0.00028 Score=64.93 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=28.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
.|++....++|.||||||||+++..++..+ |...+.++.
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 367777889999999999999986554433 555555554
No 294
>PRK14532 adenylate kinase; Provisional
Probab=97.65 E-value=4.1e-05 Score=67.61 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
-|+|.||||+||||+|+.+|+++|+.+ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHH
Confidence 388999999999999999999998655 4544443
No 295
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.65 E-value=0.00014 Score=68.87 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
++.|+|.|+|||||||+|+.+++++. .++.++..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 56789999999999999999999983 3455555554
No 296
>PRK06696 uridine kinase; Validated
Probab=97.65 E-value=9.8e-05 Score=67.39 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=41.2
Q ss_pred hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc
Q 019694 3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 58 (337)
Q Consensus 3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~ 58 (337)
.++..++...++.. ...|..|.+.|++|+||||+|+.|++.+ |.+++.++..++.
T Consensus 5 ~~~~~la~~~~~~~-~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 5 QLIKELAEHILTLN-LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34555555555532 3458899999999999999999999998 6677777766554
No 297
>PRK09354 recA recombinase A; Provisional
Probab=97.64 E-value=0.00019 Score=69.88 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=54.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccC-------------CCCChHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG-------------NAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~-------------~~Ge~~~~ir~~f~~A~~~ 79 (337)
.|++.-+.++++||||||||+||-.++.+ .|-..+.++...-.+. ++-.+ ....+.+..+..+
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp-~~~Eq~l~i~~~l 133 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQP-DTGEQALEIADTL 133 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecC-CCHHHHHHHHHHH
Confidence 46777788999999999999999977543 3556666655431110 00011 1123445555566
Q ss_pred HHhcCceEEEeccccccccc
Q 019694 80 IKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~ 99 (337)
++...+.+|+||=+-++..+
T Consensus 134 i~s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 134 VRSGAVDLIVVDSVAALVPK 153 (349)
T ss_pred hhcCCCCEEEEeChhhhcch
Confidence 67889999999999887653
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.63 E-value=0.00011 Score=65.90 Aligned_cols=67 Identities=12% Similarity=0.213 Sum_probs=40.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC----CcEEecCC-cccc---------CCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAG-ELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~s-~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il 88 (337)
.+++.||+|+||||++++++..+.. .++.+... ++.. ..+|... ..|..+...+-...|.+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~----~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDT----LSFENALKAALRQDPDVI 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCc----cCHHHHHHHHhcCCcCEE
Confidence 4789999999999999999887752 22222211 1110 0112111 234444333356689999
Q ss_pred Eeccc
Q 019694 89 MINDL 93 (337)
Q Consensus 89 ~IDEi 93 (337)
++||+
T Consensus 79 i~gEi 83 (198)
T cd01131 79 LVGEM 83 (198)
T ss_pred EEcCC
Confidence 99998
No 299
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0013 Score=62.70 Aligned_cols=133 Identities=12% Similarity=0.119 Sum_probs=78.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE-------------Ee---cCCccccC-CCCC--hHHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------------MM---SAGELESG-NAGE--PAKLIRQRYREAA 77 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i-------------~v---s~s~l~~~-~~Ge--~~~~ir~~f~~A~ 77 (337)
.-+.|.++||+|| +||+++|+.+|+.+-..-- .+ +-+++.-- -.|. ....||++-+.+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3478899999996 6899999999987643210 00 01111000 0121 1234555554442
Q ss_pred HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 157 (337)
Q Consensus 78 ~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL 157 (337)
..-..+...|++||++|.+... .. ..|+..++ ++..++.+|.+|++++.|-|.+
T Consensus 98 ~~p~~~~~kV~II~~ad~m~~~------------Aa-NaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI 151 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMHVN------------AA-NSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTI 151 (290)
T ss_pred hCcccCCcEEEEeehhhhcCHH------------HH-HHHHHHhc-------------CCCCCeEEEEEECChhhCchHH
Confidence 1112455689999999976421 12 23434444 5567789999999999999998
Q ss_pred ccCCCceEEEeC-CCHHHHHHHHH
Q 019694 158 IRDGRMEKFYWA-PTREDRIGVCK 180 (337)
Q Consensus 158 lR~gR~d~~i~~-P~~~~R~~Il~ 180 (337)
+. |+-. +.+ |+.++..+++.
T Consensus 152 ~S--Rcq~-i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 152 KS--RTQI-FHFPKNEAYLIQLLE 172 (290)
T ss_pred HH--ccee-eeCCCcHHHHHHHHH
Confidence 76 5444 344 55555555553
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.62 E-value=8.8e-05 Score=76.21 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=39.8
Q ss_pred CchhHHHHHhhhhc--CCCC-CCCcEEEEEcCCCchHHHHHHHHHHHhC-CCcEEecCCcc
Q 019694 1 MDKLVVHITKNFMS--LPNI-KVPLILGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGEL 57 (337)
Q Consensus 1 ~~k~~~~i~k~~l~--~~g~-~~p~giLL~GpPGtGKT~lA~aiA~~l~-~~~i~vs~s~l 57 (337)
||+++..|+ +|+. ..|. ...+.++|.||||+|||+||++||+.+. .+++.+.+++.
T Consensus 81 lee~ieriv-~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~ 140 (644)
T PRK15455 81 MEEAIEQIV-SYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGE 140 (644)
T ss_pred cHHHHHHHH-HHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCC
Confidence 577777777 4442 1222 2346889999999999999999999875 46677766433
No 301
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.62 E-value=0.00027 Score=64.24 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCcccc--------------------------CC---C
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELES--------------------------GN---A 62 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~--------------------------~~---~ 62 (337)
.|++....+|+.||||+|||+|+..++.+. |-+.+.++..+-.. .+ .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 588889999999999999999999765432 77777776543110 00 0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
+.....+..+.....+.++...+.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0001122334444444456778899999999887
No 302
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.60 E-value=0.00019 Score=61.52 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l 57 (337)
+++.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 666676665444
No 303
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.60 E-value=5.7e-05 Score=63.31 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
|.+.|+||||||++|+.+|+.++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 304
>PRK13948 shikimate kinase; Provisional
Probab=97.59 E-value=7.1e-05 Score=66.54 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
++|..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56788999999999999999999999999988555
No 305
>PRK14527 adenylate kinase; Provisional
Probab=97.59 E-value=5.9e-05 Score=67.02 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
.+.|+.|++.||||+|||++|+.+|+++++..+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 346788999999999999999999999987544
No 306
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.59 E-value=5.7e-05 Score=66.58 Aligned_cols=32 Identities=38% Similarity=0.562 Sum_probs=26.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
|+|.||||+|||++|+.+|+.+++..+ +.+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHH
Confidence 789999999999999999999886654 44444
No 307
>PRK13949 shikimate kinase; Provisional
Probab=97.57 E-value=6.5e-05 Score=65.82 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=28.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
+.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999887655
No 308
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.57 E-value=7.5e-05 Score=77.10 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=73.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHH-----HHHHHHHHHHHHhcCceEEEecc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~i-----r~~f~~A~~~~~~~~p~Il~IDE 92 (337)
.+---.|||+|-||||||.+.+.+++-+....+.--.+ +.-+|.+.... +++..+. ..+--....|..|||
T Consensus 459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkG---sSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDE 534 (804)
T KOG0478|consen 459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKG---SSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDE 534 (804)
T ss_pred ccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCc---cchhcceeeEEecCccceeeeec-CcEEEcCCceEEchh
Confidence 33446799999999999999999988765443321111 11111110000 0111111 111133456888999
Q ss_pred cccccc-cCCCCcccchhhHhH-HHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcchh
Q 019694 93 LDAGAG-RMGGTTQYTVNNQMV-NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPL 157 (337)
Q Consensus 93 iD~l~~-~~~~~~~~~~~~~~v-~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aL 157 (337)
+|++.. .++ +..+.+ ++++ ++. ..|. ....+.+.-||+++|-.. .|+|.|
T Consensus 535 FDKM~dStrS------vLhEvMEQQTv-SIA-------KAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptL 599 (804)
T KOG0478|consen 535 FDKMSDSTRS------VLHEVMEQQTL-SIA-------KAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTL 599 (804)
T ss_pred hhhhhHHHHH------HHHHHHHHhhh-hHh-------hcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhh
Confidence 999842 221 222221 2222 111 1122 113356778999999322 489999
Q ss_pred ccCCCceEEEeC---CCHH
Q 019694 158 IRDGRMEKFYWA---PTRE 173 (337)
Q Consensus 158 lR~gR~d~~i~~---P~~~ 173 (337)
|+ |||.+|.+ |++.
T Consensus 600 LS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 600 LS--RFDLIFLLLDKPDER 616 (804)
T ss_pred hh--hhcEEEEEecCcchh
Confidence 98 99998888 5554
No 309
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.57 E-value=0.00029 Score=61.13 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 61 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~ 61 (337)
|..|.|+|.||+|||++|+++.+.+ |.+.+.+++..+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 5678999999999999999998876 7889999988876554
No 310
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.57 E-value=8.7e-05 Score=68.37 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
..|.-|+|.||||+||||+|+.+|+.++++++.+
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 3455599999999999999999999998765544
No 311
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00063 Score=63.67 Aligned_cols=125 Identities=8% Similarity=-0.046 Sum_probs=73.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE--------------EecCCccccCC-CCC--hHHHHHHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------------MMSAGELESGN-AGE--PAKLIRQRYREAADIIK 81 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i--------------~vs~s~l~~~~-~Ge--~~~~ir~~f~~A~~~~~ 81 (337)
.+|.++||+||+|+||..+|.++|+.+-..-- .-+..++.--+ .+. ....+|++-+......-
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 46889999999999999999999987633210 00011111000 011 12233443333210001
Q ss_pred h-cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694 82 K-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 160 (337)
Q Consensus 82 ~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~ 160 (337)
. +...|++|+++|.+-.. .. ..|+..++ ++..++.+|.+|++++.|.|-++.
T Consensus 85 e~~~~KV~II~~ae~m~~~------------Aa-NaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ------------SA-NSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCHH------------HH-HHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 2 34679999999976321 22 23444444 667888999999999999999875
Q ss_pred CCceEEEeCCCH
Q 019694 161 GRMEKFYWAPTR 172 (337)
Q Consensus 161 gR~d~~i~~P~~ 172 (337)
|+-. +.+|..
T Consensus 138 -RCq~-~~~~~~ 147 (261)
T PRK05818 138 -RCVQ-YVVLSK 147 (261)
T ss_pred -heee-eecCCh
Confidence 5544 334443
No 312
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.56 E-value=0.00029 Score=78.77 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=93.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc------cccCC-CCChH---HHHHHHHHHHHHHHHhcCceEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGN-AGEPA---KLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~------l~~~~-~Ge~~---~~ir~~f~~A~~~~~~~~p~Il 88 (337)
.+-|++||-|.||+|||+|..++|++.|-.++.++.|+ |.+.+ .++.+ ......|-.| -....-|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~WV 1615 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGWV 1615 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCEE
Confidence 34578999999999999999999999999999999886 22222 22211 1222334444 2334578
Q ss_pred EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-CCCCceEEEEeCC------CCCCcchhccCC
Q 019694 89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-ENPRVPIIVTGND------FSTLYAPLIRDG 161 (337)
Q Consensus 89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-~~~~V~vI~TTN~------~~~ld~aLlR~g 161 (337)
++||+.-. +|.+..-|-..+|+-...-+|..+..- ..++..|.+|-|- ...||..++-
T Consensus 1616 lLDEiNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271 1616 LLDEINLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred Eeehhhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence 89998521 223333344455654444444443222 2345556666553 3368999985
Q ss_pred CceEEEeC-CCHHHHHHHHHHhccCC
Q 019694 162 RMEKFYWA-PTREDRIGVCKGIFRND 186 (337)
Q Consensus 162 R~d~~i~~-P~~~~R~~Il~~~~~~~ 186 (337)
||..++.- .+.++...|...++..-
T Consensus 1681 RFsvV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1681 RFSVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred hhheEEecccccchHHHHHHhhCCcc
Confidence 88876554 88888888877777543
No 313
>PRK06547 hypothetical protein; Provisional
Probab=97.56 E-value=8.4e-05 Score=65.44 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 63 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~G 63 (337)
..|..|++.|++|+|||++|+.+++.++..++.+ .++...+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~--d~~~~~~~~ 55 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL--DDLYPGWHG 55 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc--cceeccccc
Confidence 5678999999999999999999999988776644 344444433
No 314
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.55 E-value=0.00017 Score=64.38 Aligned_cols=122 Identities=17% Similarity=0.078 Sum_probs=55.8
Q ss_pred EEEEEcCCCchHHHHHHHH-HHH---hCCCcEEecCCccc----cCCCCChHH--HH----------HHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELE----SGNAGEPAK--LI----------RQRYREAADIIKK 82 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~ai-A~~---l~~~~i~vs~s~l~----~~~~Ge~~~--~i----------r~~f~~A~~~~~~ 82 (337)
..+++|.||+|||+.|-.. ... -|..++. +...|. ....+.... .+ ...+... ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 4689999999999987544 333 2555443 433221 111111100 00 0111111 011
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCC
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 162 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR 162 (337)
...++|+|||+...++.+.... ......+ ..| . .....++-||++|.++..||+.+++ .
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l----~------------~hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFL----A------------QHRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T------HHH-HGG----G------------GCCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCcccc--ccchHHH-HHH----H------------HhCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 2678999999998887665211 1111222 222 1 1233567899999999999998864 7
Q ss_pred ceEEEeC
Q 019694 163 MEKFYWA 169 (337)
Q Consensus 163 ~d~~i~~ 169 (337)
.+..+..
T Consensus 137 ve~~~~~ 143 (193)
T PF05707_consen 137 VEYHYHC 143 (193)
T ss_dssp EEEEEEE
T ss_pred HheEEEE
Confidence 7777655
No 315
>PRK06217 hypothetical protein; Validated
Probab=97.55 E-value=7.7e-05 Score=65.90 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
-|+|.|+||+||||+|+++++.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876554
No 316
>PRK04040 adenylate kinase; Provisional
Probab=97.54 E-value=8.3e-05 Score=66.38 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh--CCCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM--GINP 49 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l--~~~~ 49 (337)
+|+.|+++|+||||||++++.+++++ +..+
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 36789999999999999999999999 5544
No 317
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.53 E-value=0.0005 Score=62.67 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC-C-----------CC-----------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-N-----------AG----------- 63 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~-~-----------~G----------- 63 (337)
.|++....+.|+||||||||+++..++... +...+.++..+-... . ..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 478888889999999999999999997553 245566665431100 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHhc-CceEEEeccccccc
Q 019694 64 EPAKLIRQRYREAADIIKKG-KMCCLMINDLDAGA 97 (337)
Q Consensus 64 e~~~~ir~~f~~A~~~~~~~-~p~Il~IDEiD~l~ 97 (337)
.....+...+......+.+. .+.+|+||-|..+.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 00011223334444445566 89999999998765
No 318
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.00035 Score=64.35 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccc----------------------------------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---------------------------------- 58 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~---------------------------------- 58 (337)
.|+++...+|++||||+|||++|..++.+ .|-+.+.++..+-.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc
Confidence 58888899999999999999999876543 35555555433210
Q ss_pred -----cCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 59 -----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 59 -----~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
..|+-.....+.+.+....+.++...+.+|+||-+-.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~ 139 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY 139 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence 001001122344555555555566778899999887654
No 319
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.53 E-value=0.00041 Score=62.51 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.||.+....++|.|+-|+|||++.+.++.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 578998899999999999999999999666
No 320
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.52 E-value=5.4e-05 Score=79.26 Aligned_cols=137 Identities=19% Similarity=0.246 Sum_probs=76.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHH-H----HHHHHHHhcCceEEEecccccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-R----EAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f-~----~A~~~~~~~~p~Il~IDEiD~l 96 (337)
-.|||.|-||||||.|.+.+++-+-..++.--.+ +.-+|-++..+++.+ . +| +.+--..+.|+.|||+|++
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkg---ss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKG---SSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEcccc---ccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCC
Confidence 5699999999999999999998776554422111 011111111111111 0 11 1111336789999999986
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCC-CccccCCCCCceEEEEeCCCC-------------CCcchhccCCC
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 162 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~-g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR~gR 162 (337)
-.. .. ..+.+.++.++ +++. .........+.-|++++|-.. .|+++|+. |
T Consensus 396 ~~~----dr---------~aihEaMEQQt-IsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NEE----DR---------VAIHEAMEQQT-ISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred ChH----HH---------HHHHHHHHhcE-eeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 421 11 11222222111 1111 112223456777888888544 48899996 9
Q ss_pred ceEEEeC---CCHHHHHHH
Q 019694 163 MEKFYWA---PTREDRIGV 178 (337)
Q Consensus 163 ~d~~i~~---P~~~~R~~I 178 (337)
||.++.+ |+.+.=..|
T Consensus 460 FDLifvl~D~~d~~~D~~i 478 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEI 478 (682)
T ss_pred CCeeEEecCCCCccchHHH
Confidence 9998888 776544444
No 321
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.52 E-value=0.00099 Score=60.96 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=31.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 55 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s 55 (337)
|+++..-++|.|+||+|||+++..++... +.+++.++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 78877889999999999999998876543 7777666643
No 322
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.00019 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=44.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC--------CCcEEec-CCccccCCCCChHHHHHHHHHH------H---HHHHHhc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG--------INPIMMS-AGELESGNAGEPAKLIRQRYRE------A---ADIIKKG 83 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~--------~~~i~vs-~s~l~~~~~Ge~~~~ir~~f~~------A---~~~~~~~ 83 (337)
...|+.||||||||++.|-+|.-+. ..+..++ .+++.....|-+.--+-.+..- + -.++++.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 3478999999999999999988652 2233333 3444444444432111111111 1 1344689
Q ss_pred CceEEEeccc
Q 019694 84 KMCCLMINDL 93 (337)
Q Consensus 84 ~p~Il~IDEi 93 (337)
.|-|+++|||
T Consensus 218 ~PEViIvDEI 227 (308)
T COG3854 218 SPEVIIVDEI 227 (308)
T ss_pred CCcEEEEecc
Confidence 9999999999
No 323
>PRK14530 adenylate kinase; Provisional
Probab=97.50 E-value=8.9e-05 Score=67.19 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|+|.||||+||||+|+.+|+.++++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 488899999999999999999999765533
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.49 E-value=0.00015 Score=68.42 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=23.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.+++.||||+|||+|.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998764
No 325
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.49 E-value=0.00023 Score=65.95 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l 57 (337)
|+|.|+||+|||++|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 456677665444
No 326
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.49 E-value=0.00011 Score=64.37 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=25.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
..|++.||||+||||+|+.+++++|+..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 36889999999999999999999986544
No 327
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.48 E-value=0.00016 Score=69.50 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred hHHHHHhhhhc-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 4 LVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 4 ~~~~i~k~~l~-~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.+.++++.++. ...+.++..|.|.|+||||||++++.+|+.+|++++.+.
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34555665544 345677889999999999999999999999999998543
No 328
>PRK04296 thymidine kinase; Provisional
Probab=97.48 E-value=0.00036 Score=62.20 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=41.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC-c-------cccCCCCCh-----HHHHHHHHHHHHHHHHhcCc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG-E-------LESGNAGEP-----AKLIRQRYREAADIIKKGKM 85 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s-~-------l~~~~~Ge~-----~~~ir~~f~~A~~~~~~~~p 85 (337)
..++++||||+|||+++..++..+ +..++.++.+ + +.+. .|-. .....+.+..+.+ .....
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 467899999999999998887765 5555555431 1 1111 1211 0112334444422 34567
Q ss_pred eEEEecccc
Q 019694 86 CCLMINDLD 94 (337)
Q Consensus 86 ~Il~IDEiD 94 (337)
.+|+|||+.
T Consensus 80 dvviIDEaq 88 (190)
T PRK04296 80 DCVLIDEAQ 88 (190)
T ss_pred CEEEEEccc
Confidence 899999994
No 329
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=9.3e-05 Score=64.22 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
|-+.|||||||||+|+.+|+.+|+++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5689999999999999999999998763
No 330
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.46 E-value=0.00034 Score=69.23 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=47.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCC---c-----------cccCCCCChHHH----HHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-----------LESGNAGEPAKL----IRQRYREAAD 78 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s---~-----------l~~~~~Ge~~~~----ir~~f~~A~~ 78 (337)
-++|.||||+|||++++.+++..... ++.+... + +...-.+++... ...+...|..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 38999999999999999999975432 2222211 1 111123333222 2234445545
Q ss_pred HHHhcCceEEEeccccccc
Q 019694 79 IIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~ 97 (337)
....++..||||||+..+.
T Consensus 250 ~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 250 LVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHcCCCeEEEEEChhHHH
Confidence 5557889999999998764
No 331
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.45 E-value=0.00015 Score=62.58 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
|.|+|+||||||||++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999998 77766
No 332
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.45 E-value=0.00079 Score=60.95 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.|++.-..+.|+||||+|||+++..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 578888899999999999999999987653
No 333
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.45 E-value=0.0013 Score=57.29 Aligned_cols=73 Identities=12% Similarity=0.239 Sum_probs=47.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEE---ecCCc-------------c--c---c--CCC-CCh---HHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIM---MSAGE-------------L--E---S--GNA-GEP---AKLIRQR 72 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~---vs~s~-------------l--~---~--~~~-Ge~---~~~ir~~ 72 (337)
.|.+|+++|.|||++|-.+|-.. |..+.. +++.. + . . .+. .+. ....+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 46789999999999999886543 555444 44420 0 0 0 000 111 1244567
Q ss_pred HHHHHHHHHhcCceEEEeccccc
Q 019694 73 YREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 73 f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
++.|.+.+......+|+||||-.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHh
Confidence 78887888888899999999853
No 334
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.44 E-value=0.0012 Score=58.39 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA 42 (337)
++|+||.|.|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999997
No 335
>PRK14528 adenylate kinase; Provisional
Probab=97.43 E-value=0.00014 Score=64.57 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=26.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
+-|++.||||+|||++|+.+|+.++++.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3488999999999999999999999776543
No 336
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.43 E-value=0.0016 Score=65.80 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=50.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------CCCChHHHHH----HHHHHHHHHHHh
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKK 82 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------~~Ge~~~~ir----~~f~~A~~~~~~ 82 (337)
.|+.+...+||.|+||+|||+|+..++..+ +.+.+.++..+-... ..|-....+. .-+....+.++.
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 377777889999999999999999987754 346667765432110 0110000000 011222233467
Q ss_pred cCceEEEeccccccc
Q 019694 83 GKMCCLMINDLDAGA 97 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~ 97 (337)
..|.+|+||.|-.+.
T Consensus 169 ~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 169 ENPQACVIDSIQTLY 183 (454)
T ss_pred cCCcEEEEecchhhc
Confidence 789999999998765
No 337
>PRK02496 adk adenylate kinase; Provisional
Probab=97.42 E-value=0.00013 Score=64.27 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-+++.||||+|||++|+.+|+.++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 488999999999999999999998765543
No 338
>PRK05973 replicative DNA helicase; Provisional
Probab=97.42 E-value=0.0025 Score=59.07 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
.|+.+-..++|.|+||+|||+++-.++.+. |.+.+.++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 377777889999999999999988776543 6666555543
No 339
>PRK13946 shikimate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=64.28 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.++-|+|.|+||+|||++++.+|+.+|++|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4578999999999999999999999999987655
No 340
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.42 E-value=0.00013 Score=65.92 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
|+|.||||+|||++|+.+|+.+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876554
No 341
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.42 E-value=0.00052 Score=73.20 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=53.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHH---HhCCCcEEecCCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFA---KMGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~---~l~~~~i~vs~s~l~~~----~~Ge~--------~~~ir~~f~~A~~~~ 80 (337)
.|++.-..++++||||||||+|+..++. ..|-..+.++..+-.+. ..|-. .......+..+..++
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 3677788899999999999999976543 33555566655432110 00100 001123444455566
Q ss_pred HhcCceEEEecccccccc
Q 019694 81 KKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~ 98 (337)
+...+.+|+||-|-++..
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 778899999999998885
No 342
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.42 E-value=0.00024 Score=60.04 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
+++...|+|.|+.|+|||++++.+++.++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3555689999999999999999999999875
No 343
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.41 E-value=0.00016 Score=62.73 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=28.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
+.|+|.|+||+|||++++.+|+.+|++++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35889999999999999999999999887543
No 344
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00012 Score=64.18 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.|+++|.|||||||+|+.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999887765
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.40 E-value=0.00064 Score=63.42 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~ 54 (337)
.|+.+-..++|.||||+|||+++..++..+ |..++.++.
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 367777788999999999999999876653 666666654
No 346
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.39 E-value=0.00015 Score=65.68 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=26.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
|+++||||+|||++|+.+|+++++..+. .+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl 34 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDM 34 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCcc
Confidence 8899999999999999999999865554 4444
No 347
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.39 E-value=0.00047 Score=67.69 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=45.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCC-----CcEEecCC-------c--------cccCCCCChH-HHH---HHHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAG-------E--------LESGNAGEPA-KLI---RQRYREAADI 79 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~-----~~i~vs~s-------~--------l~~~~~Ge~~-~~i---r~~f~~A~~~ 79 (337)
+||+||||||||+|++.+++.+.. .++.+-.+ + +......++. ..+ ......|...
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f 215 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRL 215 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999887633 22221111 0 1111111221 222 2334445555
Q ss_pred HHhcCceEEEeccccccc
Q 019694 80 IKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~ 97 (337)
...++..+|++||+..++
T Consensus 216 ~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 216 VEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHcCCCEEEEEeCcHHHH
Confidence 568899999999998765
No 348
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.39 E-value=0.00044 Score=51.37 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCCcEEecC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 54 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~ 54 (337)
+.+.|+||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344555544
No 349
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.39 E-value=0.0009 Score=58.78 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 56 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~ 56 (337)
+|+.|+||+|||++|..++...+.+.+.+....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 689999999999999999988777777775553
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.38 E-value=0.00057 Score=63.97 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCcccc----------CCCCC---------------h--
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE---------------P-- 65 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~----------~~~Ge---------------~-- 65 (337)
.|++....+|++||||||||++|-.+|.+ .|-+.+.++..+-.. ...|- +
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~ 110 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASST 110 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCch
Confidence 47888899999999999999999987654 255555555431000 00000 0
Q ss_pred --HHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 66 --AKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 66 --~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
...+.+++......+++..+.+|+||=+-.+
T Consensus 111 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l 143 (259)
T TIGR03878 111 ELRENVPNLLATLAYAIKEYKVKNTVIDSITGL 143 (259)
T ss_pred hhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHh
Confidence 0123344445545556778889998887554
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.37 E-value=0.0019 Score=57.02 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+++...+.|.||.|+|||||.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 445567889999999999999999643
No 352
>PRK01184 hypothetical protein; Provisional
Probab=97.37 E-value=0.00018 Score=63.31 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
+.|+|+||||+||||+++ +++++|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 468999999999999998 788998776544
No 353
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00019 Score=63.13 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=33.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 65 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~ 65 (337)
+.|.|.|++|+||||+.+++|+.++++|+-++ .+.....|.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g~s 44 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTGMS 44 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHCcC
Confidence 45889999999999999999999999998665 3333334443
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=97.35 E-value=0.00033 Score=53.33 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHH-HHHHHHHHHh------CCCcEEecCC
Q 019694 22 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 55 (337)
Q Consensus 22 ~giLL~GpPGtGKT-~lA~aiA~~l------~~~~i~vs~s 55 (337)
..+++.|||||||| ++++.++... +-.++.++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 34667999999999 5666666655 4455555543
No 355
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.34 E-value=0.001 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+---++|+||+|||||+|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 34456899999999999999999984
No 356
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.34 E-value=0.00023 Score=62.53 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
++-|+|.||+|+|||++++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999988876653
No 357
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.34 E-value=0.00024 Score=61.65 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=27.9
Q ss_pred HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCc
Q 019694 9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGE 56 (337)
Q Consensus 9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~ 56 (337)
+..++.......++.++|+|++|+|||++.+++...+... ++.++...
T Consensus 12 l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 12 LRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp HHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred HHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 3344444445567899999999999999999887766433 55555543
No 358
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.33 E-value=0.0008 Score=60.24 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESG 60 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~ 60 (337)
....|+.+++.|+||+|||+++..+..++ +-.++.++..++...
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 34789999999999999999999999988 778999998887654
No 359
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.33 E-value=0.00054 Score=64.64 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=41.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc---cCC-CCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~---~~~-~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
|+|+|.||+|||++|+.++..+ +..++.++...+. +.| -...++.+|..+..+.+-.- .+..||++|+.-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~n 80 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNN 80 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S--
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCc
Confidence 7899999999999999998864 5677777755543 112 13457778877666643322 334789999864
No 360
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.31 E-value=0.00038 Score=68.26 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+|+||.|||.-|||||+|--.....+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 469999999999999999999887544
No 361
>PLN02674 adenylate kinase
Probab=97.31 E-value=0.00035 Score=64.98 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
+++..|+|.||||+||||+|+.+|+++++. .++.+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 445678999999999999999999999864 45555543
No 362
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.30 E-value=0.00029 Score=73.64 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=40.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC----cEEecCCc------cccCCCCChHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGE------LESGNAGEPAKLIRQRYREA 76 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~----~i~vs~s~------l~~~~~Ge~~~~ir~~f~~A 76 (337)
+.++|+||||||||++++++++.++.+ ++.+.-+. +..-+.|.+.+.++..|..|
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 102 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKA 102 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHh
Confidence 589999999999999999999999754 22222222 22335567778888888887
No 363
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.30 E-value=0.00054 Score=66.77 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC----CcEEecC-Cccc---------cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSA-GELE---------SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~-s~l~---------~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
...+|+.||+|+||||+.+++...+.- .++.+.. .++. ...+|... .-|..+...+-...|.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~----~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDT----LSFANALRAALREDPD 197 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCC----cCHHHHHHHhhccCCC
Confidence 356789999999999999999887642 2332211 1111 11122211 1233433333578999
Q ss_pred EEEeccc
Q 019694 87 CLMINDL 93 (337)
Q Consensus 87 Il~IDEi 93 (337)
+|++||+
T Consensus 198 ~i~vgEi 204 (343)
T TIGR01420 198 VILIGEM 204 (343)
T ss_pred EEEEeCC
Confidence 9999998
No 364
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.29 E-value=0.00019 Score=58.40 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l 45 (337)
|+|.|+||+||||+|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 365
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.29 E-value=0.0026 Score=57.78 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 55 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s 55 (337)
.|++....+++.|+||+|||++|..++.+ .|.+.+.++..
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 47888889999999999999999988654 26566655554
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.29 E-value=0.0012 Score=57.51 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
.+++.||||+|||+++..+|..+ +..+..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999988765 5566666554
No 367
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.28 E-value=0.00081 Score=59.08 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 56 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~ 56 (337)
.+|+.|+||+|||++|..++.+++.+.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777776654
No 368
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.28 E-value=0.00068 Score=65.80 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=65.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc-----C----CCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----G----NAGEPAKLIRQRYREAADIIKKGKMCCLMIN 91 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~-----~----~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID 91 (337)
+|++|..||||-.+|+++-... ..+|+.+++..+-+ . -.|..++ ...|+.| ...-+|+|
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk--~GffE~A-------ngGTVlLD 300 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGK--KGFFEQA-------NGGTVLLD 300 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCc--cchhhhc-------cCCeEEee
Confidence 8999999999999999986554 46899999886522 1 1222222 2566666 55679999
Q ss_pred ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
||-.+.. .++.-|+..+.+-+...+.+. .+..-+|-|||||..+
T Consensus 301 eIgEmSp-------------~lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n 344 (511)
T COG3283 301 EIGEMSP-------------RLQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN 344 (511)
T ss_pred hhhhcCH-------------HHHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence 9954432 234455566664333333222 1224578999999753
No 369
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.28 E-value=0.00036 Score=71.76 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC-----cc-----ccCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-----EL-----ESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 89 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s-----~l-----~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ 89 (337)
---.|++.|-||||||.+.+++++-+-..++.. +. .| .++..|+. .++ | +.+--....|..
T Consensus 377 GDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaSSaAGLTaaVvkD~esgdf------~iE-A-GALmLADnGICC 447 (764)
T KOG0480|consen 377 GDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKASSAAGLTAAVVKDEESGDF------TIE-A-GALMLADNGICC 447 (764)
T ss_pred CCceEEEeCCCCccHHHHHHHHhccCCcceEec-CcccccccceEEEEecCCCCce------eee-c-CcEEEccCceEE
Confidence 345699999999999999999988766554422 21 11 11222221 111 1 011122456888
Q ss_pred ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcch
Q 019694 90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAP 156 (337)
Q Consensus 90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~a 156 (337)
|||+|++-.+ .+......+-+|+. .+.-.|. .-....|--||+++|-.. .+.+|
T Consensus 448 IDEFDKMd~~----dqvAihEAMEQQtI--------SIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msAp 514 (764)
T KOG0480|consen 448 IDEFDKMDVK----DQVAIHEAMEQQTI--------SIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAP 514 (764)
T ss_pred echhcccChH----hHHHHHHHHHhhee--------hheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCch
Confidence 9999987432 12222222222222 0011111 112345667888888543 47899
Q ss_pred hccCCCceEEEeC---CCHHHHHHHHHHhc
Q 019694 157 LIRDGRMEKFYWA---PTREDRIGVCKGIF 183 (337)
Q Consensus 157 LlR~gR~d~~i~~---P~~~~R~~Il~~~~ 183 (337)
++. |||.++-+ |++..=..|-+.++
T Consensus 515 imS--RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 515 IMS--RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred hhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence 986 99998887 88877666655554
No 370
>PRK04182 cytidylate kinase; Provisional
Probab=97.27 E-value=0.00027 Score=61.37 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
.|+|.|+||+|||++++.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999988764
No 371
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.27 E-value=0.00091 Score=64.02 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE 56 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~ 56 (337)
.|++....++++||||+|||++|-.+|... +-..+.++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 378888889999999999999999987763 22566666543
No 372
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.27 E-value=0.00019 Score=61.27 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.2
Q ss_pred EEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 26 L~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
|.||||+|||++|+.||+++|+ ..++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999975 455555443
No 373
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.25 E-value=0.0034 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.051 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA 42 (337)
..-++|+||.|+|||++.+.++
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3579999999999999999998
No 374
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.23 E-value=0.0013 Score=57.51 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=30.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCcc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGEL 57 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~l 57 (337)
...|.-|+|.|+||+|||++++.+++.+.. ..+.+++..+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 356788999999999999999999998862 3455554433
No 375
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.22 E-value=0.0014 Score=63.15 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.|++.-..++|+||||+|||+||..+|-
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 3688888899999999999999988764
No 376
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.22 E-value=0.0012 Score=59.35 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
|+.++|.||+|+||||.+--+|..+ +..+-.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 7889999999999999877777654 4444444444
No 377
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.22 E-value=0.0019 Score=62.16 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.|++....++++||||+|||++|-.+|...
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 368888899999999999999999988663
No 378
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.22 E-value=0.00033 Score=63.06 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINP 49 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~ 49 (337)
.|+.+++.|+||+|||++|+.+|.++++..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367899999999999999999999998754
No 379
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.004 Score=56.30 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=20.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA 42 (337)
.....++|.||.|+|||++.+.++
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 334679999999999999999886
No 380
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.22 E-value=0.0026 Score=62.04 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.|++.-....|+||||||||+||..+|-
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 3777778889999999999999998864
No 381
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.22 E-value=0.0027 Score=56.81 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA 42 (337)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999987
No 382
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.21 E-value=0.00067 Score=65.68 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCC-Ch----H---HHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG-EP----A---KLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~G-e~----~---~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
.+.|.|.|+||+|||+|++.+++.++.+++.--+.++.....+ +. . ..+...+....+. ...+..+||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~-~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYA-VRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHH-HhhcCCeEEEcC
Confidence 5689999999999999999999999998875555544322221 11 1 2233323222122 244667999985
No 383
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.19 E-value=0.0031 Score=57.42 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~ 43 (337)
..++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999863
No 384
>PRK14526 adenylate kinase; Provisional
Probab=97.19 E-value=0.00035 Score=63.56 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
|+|.||||+|||++++.+|+.+++.. ++.+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 78999999999999999999988654 445554
No 385
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.19 E-value=0.0018 Score=64.59 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.....+++.||||||||+++.+++.+
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 345577999999999999999998776
No 386
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.19 E-value=0.00037 Score=60.02 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
.|.|+|+||+|||++|+.+++.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 47899999999999999999999988654
No 387
>PRK13764 ATPase; Provisional
Probab=97.16 E-value=0.00051 Score=71.44 Aligned_cols=28 Identities=21% Similarity=0.105 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
...++||++||||+||||++++++..+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999998875
No 388
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.15 E-value=0.0017 Score=57.13 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 58 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~ 58 (337)
...+..+.|.|+||+|||++++.++..+ +...+.+++..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 4667889999999999999999999887 4455666665553
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0022 Score=54.89 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+...++|.||+|+|||+|.++++..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446789999999999999999988654
No 390
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.14 E-value=0.0014 Score=57.19 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 56 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~ 56 (337)
.+..|.|.|+||+|||++++.++..+ +..+..+++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45688999999999999999999987 44456666544
No 391
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.14 E-value=0.00033 Score=62.62 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58899999999997666665555
No 392
>PRK14974 cell division protein FtsY; Provisional
Probab=97.13 E-value=0.0018 Score=63.03 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
.|..++|.||||+||||++..+|..+ |..+..+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 47899999999999999888887765 4455555443
No 393
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.13 E-value=0.00028 Score=66.79 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH------HhCCCcEEecCCccccCCCCC-hHHHHHHHHHHH----HHHHHhcCceEE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFA------KMGINPIMMSAGELESGNAGE-PAKLIRQRYREA----ADIIKKGKMCCL 88 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~------~l~~~~i~vs~s~l~~~~~Ge-~~~~ir~~f~~A----~~~~~~~~p~Il 88 (337)
...-+||.||.|.|||+||+-|.+ ++.-.|+.+++..+.....-. --..++..|.-| ..+++......+
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 334489999999999999999865 456789999999875421000 001122333332 245566678899
Q ss_pred Eecccccc
Q 019694 89 MINDLDAG 96 (337)
Q Consensus 89 ~IDEiD~l 96 (337)
|+|||-.+
T Consensus 287 fldeigel 294 (531)
T COG4650 287 FLDEIGEL 294 (531)
T ss_pred ehHhhhhc
Confidence 99999654
No 394
>PRK12338 hypothetical protein; Provisional
Probab=97.12 E-value=0.00048 Score=66.34 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
..|..|++.|+||+|||++|+++|..+|+..+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 35789999999999999999999999998643
No 395
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.12 E-value=0.0018 Score=57.87 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l 57 (337)
..|.-|.|.|++|+|||+++++++..+ +...+.+++..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 457788999999999999999999986 455677766544
No 396
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.10 E-value=0.0011 Score=65.31 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=43.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCC-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhcC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGK 84 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s-~l~-----------~~~~Ge~~~~ir~~f~~A~~~~~~~~ 84 (337)
..+|+.||+|+||||+.+++..+.. ..++.+... ++. ...+|... .-|..+...+-+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~----~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDV----DSFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCc----cCHHHHHHHhhccC
Confidence 3578999999999999999988762 334444221 211 01112111 13555544446789
Q ss_pred ceEEEecccc
Q 019694 85 MCCLMINDLD 94 (337)
Q Consensus 85 p~Il~IDEiD 94 (337)
|.+|++.|+-
T Consensus 226 PD~I~vGEiR 235 (372)
T TIGR02525 226 PKIIGVGEIR 235 (372)
T ss_pred CCEEeeCCCC
Confidence 9999999983
No 397
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.09 E-value=0.0033 Score=54.48 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+++...+.|.||.|+|||+|.+.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455678999999999999999998764
No 398
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.08 E-value=0.00079 Score=60.54 Aligned_cols=38 Identities=29% Similarity=0.614 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC-CcEEecCCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGE 56 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~vs~s~ 56 (337)
..|..|.|.|++|+|||||++++++.++. .+..++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 35788999999999999999999999843 344455443
No 399
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.07 E-value=0.0041 Score=55.70 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEe---cCC----cc--cc--------------CCCCC----hHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMM---SAG----EL--ES--------------GNAGE----PAKLIRQ 71 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v---s~s----~l--~~--------------~~~Ge----~~~~ir~ 71 (337)
..|.+||++|.|||+.|-.+|-.+ |..+..+ .+. +. .. .|..+ .....+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 467899999999999999886543 4433322 111 10 00 01111 1245667
Q ss_pred HHHHHHHHHHhcCceEEEeccccc
Q 019694 72 RYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 72 ~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.|..|.+.+....-.+|++|||-.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhH
Confidence 888888888888899999999853
No 400
>PRK04328 hypothetical protein; Provisional
Probab=97.07 E-value=0.00095 Score=62.08 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~ 54 (337)
.|++....+|++||||||||+|+..++.+ .|-+.+.++.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 47888899999999999999998876543 2445444443
No 401
>PLN02459 probable adenylate kinase
Probab=97.07 E-value=0.00073 Score=63.36 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=27.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
.-++|.||||+|||++|+.+|+.+++. .++.+++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHH
Confidence 347788999999999999999999865 4454444
No 402
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.06 E-value=0.00068 Score=61.55 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=31.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 62 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~ 62 (337)
+.++|+||+|||||.+|-++|+++|.+++..+.-.......
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~ 42 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS 42 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence 45789999999999999999999999999998877665543
No 403
>PF14516 AAA_35: AAA-like domain
Probab=97.06 E-value=0.03 Score=54.30 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 59 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~ 59 (337)
+..-+.++||..+|||++...+.+.+ |...+.++...+.+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~ 72 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGS 72 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCC
Confidence 35578899999999999998886654 67778887776544
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.06 E-value=0.0013 Score=58.33 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
++....++|.||+|+|||++.++++....
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34457899999999999999999988763
No 405
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.04 E-value=0.00086 Score=64.09 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
+.+.|..|++.|++|||||++|..+|+.++.+. .++.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~ 124 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGT 124 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEec
Confidence 556789999999999999999999999999873 3443
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.02 E-value=0.0039 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
|+.++++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999844
No 407
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.001 Score=65.52 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.....++|.||+|+||||++..+|..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999998764
No 408
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.02 E-value=0.00097 Score=63.82 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecC-Ccccc--C-----CCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELES--G-----NAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~-s~l~~--~-----~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
..+.+++.||+|+|||+++++++.... ..++.+.. .++.- . ..++......++.+.+ -+..|.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a----LR~~pD 206 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT----LRLRPD 206 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH----hcCCCC
Confidence 457899999999999999999998762 22333321 12110 0 0111111223444444 678999
Q ss_pred EEEeccc
Q 019694 87 CLMINDL 93 (337)
Q Consensus 87 Il~IDEi 93 (337)
.|++.|+
T Consensus 207 ~iivGEi 213 (299)
T TIGR02782 207 RIIVGEV 213 (299)
T ss_pred EEEEecc
Confidence 9999998
No 409
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.01 E-value=0.0012 Score=64.20 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEe-cCCcccc------------C-CCCChHHHHHHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELES------------G-NAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~v-s~s~l~~------------~-~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
+..+.||+.|++|+|||++.+++.....- .++.+ +..++.- . ..|...-...++.+.+ -+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~----LR 233 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC----LR 233 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH----hc
Confidence 34678999999999999999999987753 22322 1112210 0 0111111233444444 68
Q ss_pred cCceEEEecccc
Q 019694 83 GKMCCLMINDLD 94 (337)
Q Consensus 83 ~~p~Il~IDEiD 94 (337)
..|..|++.|+-
T Consensus 234 ~~PD~IivGEiR 245 (332)
T PRK13900 234 LRPDRIIVGELR 245 (332)
T ss_pred cCCCeEEEEecC
Confidence 899999999983
No 410
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.01 E-value=0.00025 Score=64.33 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l 45 (337)
++++|+||+|||++.+.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998885
No 411
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.01 E-value=0.0044 Score=63.48 Aligned_cols=82 Identities=10% Similarity=0.031 Sum_probs=52.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH-h---CCCcEEecCCccccC--------------C------------CCC-
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELESG--------------N------------AGE- 64 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~-l---~~~~i~vs~s~l~~~--------------~------------~Ge- 64 (337)
.|++....+||+|+||+|||+|+..++.+ + |-+.+.++..+-... + ...
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccc
Confidence 37888899999999999999999977543 2 555555544331000 0 000
Q ss_pred -----hHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 65 -----PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 65 -----~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
....+..++......+...++..|+||-+..+.
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 143 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF 143 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence 001234455555566677889999999987654
No 412
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.00 E-value=0.0028 Score=65.83 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=35.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC----CcEEecCCccccCCCC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAG 63 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~s~l~~~~~G 63 (337)
-.+.+..|.|+|+||+|||++|+++|..++. +++.+++..+.....|
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g 438 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS 438 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC
Confidence 3455778999999999999999999999875 3566666555433333
No 413
>PRK14529 adenylate kinase; Provisional
Probab=97.00 E-value=0.00059 Score=62.61 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=28.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~ 60 (337)
|+|.||||+||||+++.+|+.++++.+ +.+++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~ 37 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE 37 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence 788999999999999999999997654 44555443
No 414
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.99 E-value=0.017 Score=62.78 Aligned_cols=35 Identities=17% Similarity=-0.058 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
...+-++++||+|.|||+++...+...+ ++..++.
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 3456799999999999999999887776 5555544
No 415
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00076 Score=62.54 Aligned_cols=48 Identities=29% Similarity=0.444 Sum_probs=38.9
Q ss_pred hhHHHHHhhhhc---CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 3 KLVVHITKNFMS---LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 3 k~~~~i~k~~l~---~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
|.-...++.|+- ..+.+.|+.|||=|+||+|||++|.-+|..+|+..+
T Consensus 68 k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 68 KGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred hcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 344455666654 457788999999999999999999999999999744
No 416
>PTZ00202 tuzin; Provisional
Probab=96.98 E-value=0.005 Score=61.82 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=34.6
Q ss_pred hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
+.......|+.+.|+||+|||||++++.+...++...+.++..
T Consensus 278 L~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 278 LRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred HhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3334555778999999999999999999999998776666554
No 417
>PTZ00035 Rad51 protein; Provisional
Probab=96.98 E-value=0.0045 Score=60.25 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.|++.-..+.|+||||+|||+|+..++..
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 37888888999999999999999988753
No 418
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.0036 Score=55.31 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=42.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC---CCCCh----HHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---NAGEP----AKLIRQRYREA 76 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~---~~Ge~----~~~ir~~f~~A 76 (337)
..|..|.|+|.+|+||||+|.++++.| |.+.+.+++..+..+ ..|=+ ..++|.+-..|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 456788999999999999999998875 889999999887443 33322 23455555555
No 419
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.97 E-value=0.0062 Score=53.72 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=47.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEe---cC----Cccc-------------c--CCCC----ChHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMM---SA----GELE-------------S--GNAG----EPAKLIRQRY 73 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v---s~----s~l~-------------~--~~~G----e~~~~ir~~f 73 (337)
-|.+|+++|.|||+.|-.+|-.+ |..++.+ .+ ++.. . .|.. +.....++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 46688999999999999886553 5554322 22 2210 0 0111 1124566788
Q ss_pred HHHHHHHHhcCceEEEeccccc
Q 019694 74 REAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
..|.+.+..+.-.+|++|||-.
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~ 108 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTY 108 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHH
Confidence 8887888888899999999853
No 420
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.97 E-value=0.0014 Score=62.92 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=44.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEec-CCccccC----------C--CCChHHHHHHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG----------N--AGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs-~s~l~~~----------~--~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
++....+++.||+|+|||+++++++..+.- ..+.+. ..++.-. . .+...-.+.+.+..+ -+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----Lr 216 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC----LR 216 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH----hc
Confidence 345678999999999999999999887632 222221 1111100 0 011111233444444 57
Q ss_pred cCceEEEecccc
Q 019694 83 GKMCCLMINDLD 94 (337)
Q Consensus 83 ~~p~Il~IDEiD 94 (337)
..|.+|++||+-
T Consensus 217 ~~pd~ii~gE~r 228 (308)
T TIGR02788 217 MRPDRIILGELR 228 (308)
T ss_pred CCCCeEEEeccC
Confidence 899999999984
No 421
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.96 E-value=0.0071 Score=60.21 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=46.4
Q ss_pred cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
......++ .++|+||-+||||++.+.+.+...-.++.++.-++......- ......+..+ .......||||||
T Consensus 31 ~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~----~~~~~~yifLDEI 103 (398)
T COG1373 31 KKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIEL----KEREKSYIFLDEI 103 (398)
T ss_pred hhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHh----hccCCceEEEecc
Confidence 34444555 899999999999999988888775555555554443321111 1111222222 2225679999999
Q ss_pred ccc
Q 019694 94 DAG 96 (337)
Q Consensus 94 D~l 96 (337)
...
T Consensus 104 q~v 106 (398)
T COG1373 104 QNV 106 (398)
T ss_pred cCc
Confidence 753
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.96 E-value=0.0045 Score=62.27 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 56 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~ 56 (337)
..|..++++|++|+|||+++..+|..+ |..+..++...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 358899999999999999999998876 55566665543
No 423
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.96 E-value=0.0057 Score=61.29 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 56 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~ 56 (337)
.|..|+|.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 47889999999999999999998766 66667666643
No 424
>PRK05439 pantothenate kinase; Provisional
Probab=96.95 E-value=0.0011 Score=63.63 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=31.8
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.+.|+.......|..|.+.|+||+||||+|+.++..++
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555555667899999999999999999999988764
No 425
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.94 E-value=0.0041 Score=58.72 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
..|+.++|.||||+|||+++..+|..+ |..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457889999999999999999888765 5555555543
No 426
>PRK10867 signal recognition particle protein; Provisional
Probab=96.92 E-value=0.0033 Score=63.12 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGE 56 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~ 56 (337)
.+|..|++.||+|+||||++..+|..+ |..+..+++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 358899999999999999877777644 66666666653
No 427
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.92 E-value=0.0009 Score=63.59 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA 76 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A 76 (337)
.-+.+|+.|+||||||.+|-.+++.+|- ||..++++++.+-....++. +.+.|+.+
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEA-ltQAfRks 122 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEA-LTQAFRKS 122 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHH-HHHHHHHh
Confidence 4688999999999999999999999984 89999999998876666644 45777776
No 428
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.92 E-value=0.0015 Score=61.16 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEec-CCccccCCC-------CChHHHHHHHHHHHHHHHHhcCceE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCC 87 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs-~s~l~~~~~-------Ge~~~~ir~~f~~A~~~~~~~~p~I 87 (337)
+....+++.||+|+|||++.+++..++.-. ++.+. ..++.-... ........+.+..+ -+..|.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~ 200 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDV 200 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SE
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCc
Confidence 446789999999999999999999887544 33332 222211100 01111223444444 6788999
Q ss_pred EEecccc
Q 019694 88 LMINDLD 94 (337)
Q Consensus 88 l~IDEiD 94 (337)
|+|.||-
T Consensus 201 iiigEiR 207 (270)
T PF00437_consen 201 IIIGEIR 207 (270)
T ss_dssp EEESCE-
T ss_pred ccccccC
Confidence 9999994
No 429
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.91 E-value=0.015 Score=65.86 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=96.5
Q ss_pred HHhhhhcC----CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc--cCCCCChH----H---HHHHHHH
Q 019694 8 ITKNFMSL----PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPA----K---LIRQRYR 74 (337)
Q Consensus 8 i~k~~l~~----~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~--~~~~Ge~~----~---~ir~~f~ 74 (337)
+.||||.. .+-..| ||+.||.-+|||++...+|.+.|-.|+.++-.+.- ..|+|... . .-..+.-
T Consensus 873 Vqkn~ln~~Ra~s~~~fP--~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLV 950 (4600)
T COG5271 873 VQKNYLNTMRAASLSNFP--LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLV 950 (4600)
T ss_pred HHHHHHHHHHHHhhcCCc--EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHH
Confidence 55777762 233445 89999999999999999999999999999887642 23444311 0 0012222
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCCC--
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS-- 151 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~~-- 151 (337)
+| +++ .--|++||+.-... -+...|-.++|+-...-+|..... .+.+...+.+|-|-|-
T Consensus 951 eA---lR~--GyWIVLDELNLApT-------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~Y 1012 (4600)
T COG5271 951 EA---LRR--GYWIVLDELNLAPT-------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGY 1012 (4600)
T ss_pred HH---Hhc--CcEEEeeccccCcH-------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccc
Confidence 23 222 34688999853211 233455566664433333433211 2344555666666433
Q ss_pred ----CCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhh
Q 019694 152 ----TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 205 (337)
Q Consensus 152 ----~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl 205 (337)
.|..|++- ||-..++- -..++...|++. ...+.+.--.++++-|.+-.+
T Consensus 1013 gGRK~LSrAFRN--RFlE~hFddipedEle~ILh~---rc~iapSyakKiVeVyr~Ls~ 1066 (4600)
T COG5271 1013 GGRKGLSRAFRN--RFLEMHFDDIPEDELEEILHG---RCEIAPSYAKKIVEVYRGLSS 1066 (4600)
T ss_pred cchHHHHHHHHh--hhHhhhcccCcHHHHHHHHhc---cCccCHHHHHHHHHHHHHhhh
Confidence 24455542 55443333 345556666643 335666555666665555443
No 430
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.91 E-value=0.0017 Score=64.57 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
..+-|.|.|++|||||||++++|+.+|...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 35679999999999999999999999887553
No 431
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.91 E-value=0.053 Score=54.14 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=40.5
Q ss_pred EEEEeCCCC---CCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCC----------------------CCCHHHHHH
Q 019694 143 IIVTGNDFS---TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----------------------NVADDDIVK 195 (337)
Q Consensus 143 vI~TTN~~~---~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~----------------------~l~~~~la~ 195 (337)
||+.|++.. .|..+| |.|.=+.|.+ .+.+.-...+..++... ..+..++..
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 555565544 344454 6676677777 66677777766666543 124467788
Q ss_pred HhcCCCch--hhHhH
Q 019694 196 LVDTFPGQ--SIDFF 208 (337)
Q Consensus 196 l~~gf~ga--dl~~~ 208 (337)
..+-+-|+ ||+++
T Consensus 264 ~i~~LGGRltDLe~l 278 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFL 278 (431)
T ss_pred HHHHcCCcHHHHHHH
Confidence 88888887 66654
No 432
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.90 E-value=0.0023 Score=68.03 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCCCcE--EEEEcCCCchHHHHHHHHHHHh
Q 019694 17 NIKVPLI--LGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 17 g~~~p~g--iLL~GpPGtGKT~lA~aiA~~l 45 (337)
+++.|.| |.+.|+.|||||||+|.+..-.
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455555 9999999999999999997643
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0033 Score=54.75 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+++...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455678999999999999999998875
No 434
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.89 E-value=0.0027 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
...++||.|+|||.+..|++-.++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~ 48 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6789999999999999999776654
No 435
>PRK07667 uridine kinase; Provisional
Probab=96.89 E-value=0.0019 Score=57.57 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 57 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l 57 (337)
+..|.|.|+||+|||++|+.+++.++ .++..++..++
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 37889999999999999999999763 56666666554
No 436
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.89 E-value=0.0011 Score=55.25 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
+....|+|+|+=|+|||+++|.+++.+|..-...|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~S 47 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTS 47 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCC
Confidence 55578999999999999999999999998653333
No 437
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.88 E-value=0.022 Score=52.90 Aligned_cols=137 Identities=13% Similarity=0.241 Sum_probs=73.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCccccC---CC-----C------ChHHHHHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG---NA-----G------EPAKLIRQRYREAADII 80 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~l~~~---~~-----G------e~~~~ir~~f~~A~~~~ 80 (337)
.+.|--+.+.|++|||||+++..+...+.-. ++.+.. ..... ++ . +.+..+...-....+..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 4556678899999999999999988776532 233322 21111 10 0 01111111111111122
Q ss_pred H------hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 81 K------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 81 ~------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
+ ...+++|+|||+-. . ....+.+.+++ . ....-++-+|..+.....||
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~--------~--~~k~~~l~~~~----~------------~gRH~~is~i~l~Q~~~~lp 142 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGD--------K--KLKSKILRQFF----N------------NGRHYNISIIFLSQSYFHLP 142 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCC--------c--hhhhHHHHHHH----h------------cccccceEEEEEeeecccCC
Confidence 2 13378999999621 0 01112232222 2 12345688999999999999
Q ss_pred chhccCCCceEEEeC-CCHHHHHHHHHHhc
Q 019694 155 APLIRDGRMEKFYWA-PTREDRIGVCKGIF 183 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~ 183 (337)
+.++. -.+.++.. -+..+...|++.+.
T Consensus 143 ~~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 143 PNIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 98743 56666655 45555555555443
No 438
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.88 E-value=0.0016 Score=57.53 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 59 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~ 59 (337)
+.|+|.|+|-+|||++|+++.+.+..+++.++...+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 57999999999999999999999999999888776644
No 439
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.88 E-value=0.002 Score=71.79 Aligned_cols=174 Identities=11% Similarity=0.120 Sum_probs=105.0
Q ss_pred CCCcEEEEEcCCCchHHH-HHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-----------hcCce
Q 019694 19 KVPLILGIWGGKGQGKSF-QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~-lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~ 86 (337)
..-+++++.||||+|||+ ++-++-+++...++.++-+.-. .++..++ ..++--+-.. .-+.-
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLS-VLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHH-HHHhhceeeccCCeEEEccCcchhhe
Confidence 345799999999999998 4668888888888877765321 1111221 1221100000 11235
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-----CCCCceEEEEeCCCCCC-----cch
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFSTL-----YAP 156 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-----~~~~V~vI~TTN~~~~l-----d~a 156 (337)
|||.|||. +-..+.-..+ .+.-+|..++ ...|+|... ...++++.+++|-+.+. +..
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~------~vI~FlR~l~------e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPP------TVIVFLRPLV------ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEEeeccC-CccccccCCC------ceEEeeHHHH------HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 89999998 3211110011 1111221222 223677653 35688999999976543 344
Q ss_pred hccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhh
Q 019694 157 LIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 214 (337)
Q Consensus 157 LlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~ 214 (337)
++| --.++++ |.......|..+++...-+-.++...+++.+..++.+++...+++
T Consensus 1633 f~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~ 1689 (3164)
T COG5245 1633 FIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDK 1689 (3164)
T ss_pred Hhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554 3345555 999999999888887766666777778888888888777666654
No 440
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.87 E-value=0.017 Score=56.70 Aligned_cols=89 Identities=16% Similarity=0.302 Sum_probs=58.0
Q ss_pred HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------------CCCCChHH----H-
Q 019694 9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------------GNAGEPAK----L- 68 (337)
Q Consensus 9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------------~~~Ge~~~----~- 68 (337)
.+.++-...-..|..|.|||..|||||.+.+.+.++++.+.+.+++-+... .+.|..-+ +
T Consensus 18 L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~ 97 (438)
T KOG2543|consen 18 LKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENF 97 (438)
T ss_pred HHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHH
Confidence 344444344478999999999999999999999999999988887765321 11111111 1
Q ss_pred --HHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 69 --IRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 69 --ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
....|.+...+-+..+...|++|.+|.+-
T Consensus 98 ~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 98 SDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred HHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 11233332222234567899999999874
No 441
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.87 E-value=0.0016 Score=62.98 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEec-CCccccC------CCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCC 87 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs-~s~l~~~------~~Ge~~~~ir~~f~~A~~~~~~~~p~I 87 (337)
..+.+|+.|++|+|||++.+++..... ..++.+. ..++.-. +.....-....+.+.+ -+..|..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~a----LR~~PD~ 218 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKST----MRLRPDR 218 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHH----hCCCCCE
Confidence 356899999999999999999988762 2333332 2222110 0011111123344444 6789999
Q ss_pred EEeccc
Q 019694 88 LMINDL 93 (337)
Q Consensus 88 l~IDEi 93 (337)
|++.|+
T Consensus 219 IivGEi 224 (323)
T PRK13833 219 IIVGEV 224 (323)
T ss_pred EEEeec
Confidence 999998
No 442
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.86 E-value=0.0013 Score=67.84 Aligned_cols=162 Identities=15% Similarity=0.257 Sum_probs=95.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccc-----cCCCCChHHHHHHHHHHHHH-----HHHhcCceEEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELE-----SGNAGEPAKLIRQRYREAAD-----IIKKGKMCCLMI 90 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~-----~~~~Ge~~~~ir~~f~~A~~-----~~~~~~p~Il~I 90 (337)
-+||.|.|||||-.+++++-+... -+|+-+++..+- +.++|-. ...|..|.. .+.......+|+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~----~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV----AGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC----ccccccchhccccccceecCCCccHH
Confidence 389999999999999999966543 478988887652 2222221 122222210 011224467999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceE-----
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK----- 165 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~----- 165 (337)
|||-.+- -.++.-|+.++..-..+-++|. ...-.|-||+||++.= ..|.+-|||-.
T Consensus 414 deIgd~p-------------~~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~dl---~~lv~~g~fredLyyr 474 (606)
T COG3284 414 DEIGDMP-------------LALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRDL---AQLVEQGRFREDLYYR 474 (606)
T ss_pred HHhhhch-------------HHHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcCH---HHHHHcCCchHHHHHH
Confidence 9995432 1344566667765444445554 2334678999998742 44778888753
Q ss_pred ----EEeCCCHHHH---HHHHHHhccC-----CCCCHHHHHHH-hcCCCchhhHh
Q 019694 166 ----FYWAPTREDR---IGVCKGIFRN-----DNVADDDIVKL-VDTFPGQSIDF 207 (337)
Q Consensus 166 ----~i~~P~~~~R---~~Il~~~~~~-----~~l~~~~la~l-~~gf~gadl~~ 207 (337)
.|.+|...+| ...+..++.. ..++.+.++.+ ...++|..-+.
T Consensus 475 L~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel 529 (606)
T COG3284 475 LNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIREL 529 (606)
T ss_pred hcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHH
Confidence 3334877776 3334444432 25555655554 56777765443
No 443
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.85 E-value=0.0052 Score=58.72 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=45.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
..+..+.++|+|+.|+|||++.+.+.+-+|-....+..+...... ++. .|..| .-....+++.||++.
T Consensus 72 ~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~------~f~~a----~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 72 NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH------RFGLA----RLEGKRAVIGDEVQK 139 (304)
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC------Cchhh----hhcCCEEEEecCCCC
Confidence 467789999999999999999999988888654333332222221 111 24444 434556888899874
No 444
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.84 E-value=0.0045 Score=60.36 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
|+..-..++++|+||+|||++|..+|..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 6777788899999999999999987743
No 445
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0023 Score=65.14 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=44.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--------CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il 88 (337)
..+||.++-+.||||||||+|.+++-..+- -++-.+++..-.-.+. +...-+.++...| +-....+|
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTfl-Ecp~Dl~~miDva----KIaDLVlL 139 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL-ECPSDLHQMIDVA----KIADLVLL 139 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEE-eChHHHHHHHhHH----HhhheeEE
Confidence 567899999999999999999999877652 2333333322111111 2234455666666 55566677
Q ss_pred Eecc
Q 019694 89 MIND 92 (337)
Q Consensus 89 ~IDE 92 (337)
+||-
T Consensus 140 lIdg 143 (1077)
T COG5192 140 LIDG 143 (1077)
T ss_pred Eecc
Confidence 7664
No 446
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.83 E-value=0.0043 Score=59.85 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
|+.+-..+.++||||+|||+|+..+|.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 778888899999999999999998875
No 447
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0067 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
--|-|.||+|||||||.+.||.-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998754
No 448
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.83 E-value=0.0016 Score=58.68 Aligned_cols=27 Identities=33% Similarity=0.717 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
+..|.|.||+|+|||||+++++..+..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456779999999999999999998763
No 449
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.82 E-value=0.0026 Score=65.33 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=41.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il 88 (337)
..|..|+++|+||+||||+|+.++...++. .++...+ |. .......|.+.+..+.+.||
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~--~vn~D~l-----g~----~~~~~~~a~~~L~~G~sVVI 425 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTL-----GS----TQNCLTACERALDQGKRCAI 425 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCe--EECcHHH-----HH----HHHHHHHHHHHHhCCCcEEE
Confidence 467899999999999999999999987654 4454433 21 12344556666677776443
No 450
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.81 E-value=0.0011 Score=59.15 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.|.|.||+|+||||+|+.++..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999987
No 451
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.81 E-value=0.0058 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
+.|.||+|+|||++++.+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999986543
No 452
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.81 E-value=0.0012 Score=58.05 Aligned_cols=32 Identities=38% Similarity=0.634 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
|+|+|+||+|||++++.+++ +|++++ ++.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 78999999999999999998 776554 444443
No 453
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.81 E-value=0.0019 Score=61.57 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=31.3
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.+.|+.....+.|..|.|.||+|+||||+|+.+...+.
T Consensus 49 ~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 49 VLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566555567899999999999999999998877664
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.80 E-value=0.0018 Score=60.84 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=42.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC---CCcEEec-CCccccCCCCCh--HHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMS-AGELESGNAGEP--AKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs-~s~l~~~~~Ge~--~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
.+++.||+|+||||+.+++...+. ..++.+. ..++.-+.+-.. .......|..+...+-+..|.+|+++||.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 489999999999999999977764 2344432 222211100000 00001134444444467899999999994
No 455
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.79 E-value=0.0014 Score=57.94 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 58 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~ 58 (337)
|++.|+||+|||++|+.+++.++ .+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 78999999999999999999874 555666655544
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.79 E-value=0.0013 Score=58.25 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=24.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINP 49 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~ 49 (337)
..+.|.||+|+||||+++.++..++..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 4688999999999999999999887654
No 457
>PLN02165 adenylate isopentenyltransferase
Probab=96.78 E-value=0.0015 Score=63.37 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
.+.+.|.||+|+|||+||..+|..++..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 3468999999999999999999999877665543
No 458
>PRK13808 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=64.12 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
|+|+||||+|||++++.||+.+++. .++.++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 7899999999999999999999864 44545443
No 459
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.78 E-value=0.0049 Score=58.46 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----C-CCcEEecCCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE 56 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l----~-~~~i~vs~s~ 56 (337)
.++.++|.||+|+||||++..+|..+ | ..+..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46789999999999999999988765 3 4555665543
No 460
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.78 E-value=0.0019 Score=63.08 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEec-CCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG------------NAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs-~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
++..+.||+.||+|+||||++++++..... .++.+. ..++.-. ..|...-...++++.+ -+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~----LR 234 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS----LR 234 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH----hc
Confidence 345678999999999999999999987643 223221 1122100 0011111233444444 67
Q ss_pred cCceEEEeccc
Q 019694 83 GKMCCLMINDL 93 (337)
Q Consensus 83 ~~p~Il~IDEi 93 (337)
..|..|++.|+
T Consensus 235 ~~pD~IivGEi 245 (344)
T PRK13851 235 MRPDRILLGEM 245 (344)
T ss_pred CCCCeEEEEee
Confidence 79999999998
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.78 E-value=0.002 Score=57.48 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
++...|.|.||+|+|||+|++.++..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999999876
No 462
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.77 E-value=0.0012 Score=58.92 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCCcE
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM-GINPI 50 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l-~~~~i 50 (337)
|.+.|+||+|||++|+.+++.+ ++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6789999999999999999998 34333
No 463
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.77 E-value=0.0016 Score=62.53 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
.|+.|+|.||+|+|||++|..+|++++..++..+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35789999999999999999999999887766554
No 464
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.76 E-value=0.0026 Score=62.44 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
..|..+.|.||.|||||++.+++.+.+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 56778999999999999999999887743
No 465
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.012 Score=58.15 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=81.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCcccc------CCCC--------ChHHHHHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELES------GNAG--------EPAKLIRQRYREAADII 80 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~------~~~G--------e~~~~ir~~f~~A~~~~ 80 (337)
|+-+-..+|+-|.||.|||||.-.++..+- ..++++++.+=.. ...| -.+.++..+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l---- 164 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL---- 164 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH----
Confidence 444556688889999999999888877653 2688888864211 1111 1223344444444
Q ss_pred HhcCceEEEecccccccccCCCCcccch-hhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc-chhc
Q 019694 81 KKGKMCCLMINDLDAGAGRMGGTTQYTV-NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY-APLI 158 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~-~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld-~aLl 158 (337)
...+|.+++||-|-.+....-.+...++ ..+.....|+++.. ...--+++++--.-.-.|- |-++
T Consensus 165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK-------------~~~i~~fiVGHVTKeG~IAGPrvL 231 (456)
T COG1066 165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK-------------TKNIAIFIVGHVTKEGAIAGPRVL 231 (456)
T ss_pred HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH-------------HcCCeEEEEEEEcccccccCchhe
Confidence 7889999999999877643321222222 23455556665544 1122233333322222222 2222
Q ss_pred cCCCceEEEeC-CCHHHHHHHHHHh
Q 019694 159 RDGRMEKFYWA-PTREDRIGVCKGI 182 (337)
Q Consensus 159 R~gR~d~~i~~-P~~~~R~~Il~~~ 182 (337)
-+-.|-.+++ -++.....|++.+
T Consensus 232 -EHmVDtVlyFEGd~~~~~RiLR~v 255 (456)
T COG1066 232 -EHMVDTVLYFEGDRHSRYRILRSV 255 (456)
T ss_pred -eeeeeEEEEEeccCCCceeeeehh
Confidence 2445666666 5555566665433
No 466
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.75 E-value=0.004 Score=52.86 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCc---cccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE---LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 92 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~---l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE 92 (337)
+++...+.|.||+|+|||+|.++++..... .-+.+++.. +...+.+.. .-+-.+..| -...|.++++||
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~--~~rv~lara----l~~~p~illlDE 96 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE--KMRLALAKL----LLENPNLLLLDE 96 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH--HHHHHHHHH----HhcCCCEEEEeC
Confidence 345567899999999999999999886532 112222110 001111111 111123333 356899999999
Q ss_pred cccc
Q 019694 93 LDAG 96 (337)
Q Consensus 93 iD~l 96 (337)
-.+.
T Consensus 97 P~~~ 100 (144)
T cd03221 97 PTNH 100 (144)
T ss_pred CccC
Confidence 7643
No 467
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.75 E-value=0.0012 Score=67.91 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=73.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHH-----HHHHHHHHHHHHhcCceEEEecccccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~i-----r~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
..|||.|-||||||.+.|.+++-....++..--+ +.-+|-+.... ++---+| +.+--....|.+|||+|++
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa~v~KdPvtrEWTLEa-GALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTAYVRKDPVTREWTLEA-GALVLADKGVCLIDEFDKM 558 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeEEEeeCCccceeeecc-CeEEEccCceEEeehhhhh
Confidence 4599999999999999999988665444432111 11111110000 0000011 0001124568899999987
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcchhccCCCc
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGRM 163 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR~gR~ 163 (337)
-... ..+....+-+|.+ . ++-.|. ......+..||+|+|-.. .|-.|++. ||
T Consensus 559 ndqD----RtSIHEAMEQQSI-S-------ISKAGI-VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RF 623 (854)
T KOG0477|consen 559 NDQD----RTSIHEAMEQQSI-S-------ISKAGI-VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RF 623 (854)
T ss_pred cccc----cchHHHHHHhcch-h-------hhhhhH-HHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hc
Confidence 5211 1112222222111 0 000010 012245667899988521 35566664 89
Q ss_pred eEEEeC-----CCHHHHHH--HHHHhccC
Q 019694 164 EKFYWA-----PTREDRIG--VCKGIFRN 185 (337)
Q Consensus 164 d~~i~~-----P~~~~R~~--Il~~~~~~ 185 (337)
|..--+ |-.+++.+ ++..|.+.
T Consensus 624 DiLcVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 624 DILCVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred ceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence 987766 77777644 35666543
No 468
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.75 E-value=0.0011 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
+.++|.||+|+|||++++.+++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997654
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.74 E-value=0.0013 Score=57.40 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
.++|.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998764
No 470
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0064 Score=58.31 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
.|+.++|.||.++|||-||-.+|++++.++++++.-.+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 478899999999999999999999999999988766554
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.73 E-value=0.0058 Score=62.32 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 56 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~ 56 (337)
.|+.....+|+.||||+|||+|+-.++.+. |-+.+.++..+
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 478888899999999999999999887654 55566665543
No 472
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.73 E-value=0.0016 Score=59.42 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
+..|.|.||+|+|||++++.+|+++++.++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 346889999999999999999999998765
No 473
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.72 E-value=0.018 Score=52.79 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999876
No 474
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.71 E-value=0.00084 Score=67.57 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=76.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHH------HHHHHHHHHhcCceEEEeccccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR------YREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~------f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
-.|+|.|-||+-||.|.+.|.+-.-...+....+ +.-+|-++.-+++. ++-. .+--....|..|||+|+
T Consensus 376 INicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEGG--ALVLAD~GICCIDEfDK 450 (721)
T KOG0482|consen 376 INICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEGG--ALVLADGGICCIDEFDK 450 (721)
T ss_pred eeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCeeEeccc--eEEEccCceEeehhhhh
Confidence 4689999999999999999988665555543222 12223322211110 0000 00012456888999999
Q ss_pred ccccCCCCcccchhhH-hHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcchhccCC
Q 019694 96 GAGRMGGTTQYTVNNQ-MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDG 161 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~-~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR~g 161 (337)
+.... .+.... +-+|+. .+.. .| .....+.+.-|++++|-.. .||+|||.
T Consensus 451 M~e~D-----RtAIHEVMEQQTI-SIaK-------AG-I~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS-- 514 (721)
T KOG0482|consen 451 MDESD-----RTAIHEVMEQQTI-SIAK-------AG-INTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS-- 514 (721)
T ss_pred hhhhh-----hHHHHHHHHhhhh-hhhh-------hc-cccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--
Confidence 86321 111111 222222 1111 12 1223456778888888422 58999996
Q ss_pred CceEEEeC---CCHHHHHHHHH
Q 019694 162 RMEKFYWA---PTREDRIGVCK 180 (337)
Q Consensus 162 R~d~~i~~---P~~~~R~~Il~ 180 (337)
|||....+ |+++.=..+.+
T Consensus 515 RFDll~Li~D~pdrd~D~~LA~ 536 (721)
T KOG0482|consen 515 RFDLLWLIQDRPDRDNDLRLAQ 536 (721)
T ss_pred hhhhhhhhccCCcccchHHHHH
Confidence 99986665 88876555533
No 475
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0073 Score=65.16 Aligned_cols=137 Identities=18% Similarity=0.130 Sum_probs=89.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCceEE
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCL 88 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il 88 (337)
+.=+|.|.||+|||.++.-+|+.. +..++.++.+.+. .++-|+-+..++.+.+++ . .+...||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v----~~~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEV----ESGGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHH----hcCCCcEEE
Confidence 456889999999999999998864 2345666666443 346677777777777777 5 5677899
Q ss_pred EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----CCCcchhccCCCc
Q 019694 89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRM 163 (337)
Q Consensus 89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----~~ld~aLlR~gR~ 163 (337)
||||+.-+.+..+ . +. ....+ ..|.-+ -.++.+.+|+||... -.-||+|-| ||
T Consensus 285 figelh~lvg~g~--~-~~-~~d~~-nlLkp~---------------L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw 342 (898)
T KOG1051|consen 285 FLGELHWLVGSGS--N-YG-AIDAA-NLLKPL---------------LARGGLWCIGATTLETYRKCIEKDPALER--RW 342 (898)
T ss_pred EecceeeeecCCC--c-ch-HHHHH-HhhHHH---------------HhcCCeEEEecccHHHHHHHHhhCcchhh--Cc
Confidence 9999998875443 1 11 11111 112111 123447889877632 245899988 88
Q ss_pred eEEEeC-CCHHHHHHHHHHhcc
Q 019694 164 EKFYWA-PTREDRIGVCKGIFR 184 (337)
Q Consensus 164 d~~i~~-P~~~~R~~Il~~~~~ 184 (337)
+.+.-- |+.++-..|++..-.
T Consensus 343 ~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 343 QLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred ceeEeccCcccchhhhhhhhhh
Confidence 886665 998887667655443
No 476
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0011 Score=59.93 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
-|+|+|+||+|||++|+.+|+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999884
No 477
>COG0645 Predicted kinase [General function prediction only]
Probab=96.71 E-value=0.0044 Score=54.24 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=46.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCC--------------C-hHHHHHHHHHHHHHHHHhcCce
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG--------------E-PAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~G--------------e-~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
..+|++|-||+|||++|+.+++.+|.-.+..+ .+.....| + +.+--..++..|..++..+.+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD--~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~V 79 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD--VIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSV 79 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehH--HHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 57899999999999999999999997655332 22111111 1 1222335677777777777775
Q ss_pred EEEeccccccccc
Q 019694 87 CLMINDLDAGAGR 99 (337)
Q Consensus 87 Il~IDEiD~l~~~ 99 (337)
|+ |+.+.+
T Consensus 80 Vl-----Da~~~r 87 (170)
T COG0645 80 VL-----DATFDR 87 (170)
T ss_pred EE-----ecccCC
Confidence 54 665543
No 478
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.71 E-value=0.0017 Score=58.23 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=28.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
+.|.|+|++|+|||++++.+++.+|++++ ++.++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 35899999999999999999998887766 44444
No 479
>PRK08356 hypothetical protein; Provisional
Probab=96.70 E-value=0.0018 Score=57.72 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 56 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~ 56 (337)
..|+|.||||+||||+|+.+. +.|+. .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 458899999999999999995 56665 455554
No 480
>PRK13975 thymidylate kinase; Provisional
Probab=96.70 E-value=0.0021 Score=56.90 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINP 49 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~ 49 (337)
+-|.|.|++|+||||+++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5688999999999999999999998643
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.69 E-value=0.0022 Score=57.06 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC-CCcEEecCCcc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGEL 57 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~-~~~i~vs~s~l 57 (337)
|.|.||+|+||||+++.++..++ .....++...+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 68999999999999999999873 33445554443
No 482
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.69 E-value=0.0021 Score=58.18 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
-.|..|.|+|++|||||++++.+++++|++++.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 356789999999999999999999999987543
No 483
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.68 E-value=0.0024 Score=61.74 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEe-cCCcccc--C----CCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMM-SAGELES--G----NAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~v-s~s~l~~--~----~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
+..+.+++.|++|+|||+++++++.+. ...++.+ +..++.- . +.........++++.+ -+..|.
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD 221 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPD 221 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCC
Confidence 346789999999999999999998864 1122222 2222210 0 0001111234455555 678999
Q ss_pred EEEeccc
Q 019694 87 CLMINDL 93 (337)
Q Consensus 87 Il~IDEi 93 (337)
.|++.|+
T Consensus 222 ~IivGEi 228 (319)
T PRK13894 222 RILVGEV 228 (319)
T ss_pred EEEEecc
Confidence 9999998
No 484
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.68 E-value=0.0044 Score=57.71 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 55 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s 55 (337)
.|++.-..+|++|+||||||+++..++.+ .|.+++.++..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 56788888999999999999999987554 37778888876
No 485
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.68 E-value=0.0017 Score=57.83 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.|+.|.|.||+|+|||+|++.+.++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999999988763
No 486
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.66 E-value=0.0042 Score=54.95 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=42.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCcc--ccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l--~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
+++-..+.|.||.|+|||||.+.++..... .-+.+++..+ ......-+... ++...-| .+-...|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~la--ral~~~p~lllLDEP 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIA--AALLRNATFYLFDEP 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHH--HHHhcCCCEEEEECC
Confidence 355567889999999999999999886532 1233332111 11110011111 2333333 113568999999997
Q ss_pred cc
Q 019694 94 DA 95 (337)
Q Consensus 94 D~ 95 (337)
-+
T Consensus 99 ts 100 (177)
T cd03222 99 SA 100 (177)
T ss_pred cc
Confidence 54
No 487
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.66 E-value=0.0048 Score=60.06 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=38.2
Q ss_pred CchhHHHHHhhhhc--CCCC-CCCcEEEEEcCCCchHHHHHHHHHHHhCC-CcEEecCC
Q 019694 1 MDKLVVHITKNFMS--LPNI-KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAG 55 (337)
Q Consensus 1 ~~k~~~~i~k~~l~--~~g~-~~p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~vs~s 55 (337)
||+.+.+++. |++ ..|. .--+.++|.||+|+|||++++.+-+-+.. +++.+..+
T Consensus 66 ~~~~i~~lV~-~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~ 123 (358)
T PF08298_consen 66 MEETIERLVN-YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC 123 (358)
T ss_pred cHHHHHHHHH-HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence 5666777766 555 2233 34578899999999999999999887653 55555433
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.66 E-value=0.0079 Score=58.12 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
+.|..++|.||+|+||||++..+|..+ +..+..+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 357889999999999999999998876 444554444
No 489
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.65 E-value=0.0018 Score=59.33 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
+..|.+.||||+|||++++.+|+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578899999999999999999999987653
No 490
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.64 E-value=0.007 Score=56.64 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC---------CcEEecCCc-c--------ccCCCCChHH----------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGE-L--------ESGNAGEPAK---------- 67 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~---------~~i~vs~s~-l--------~~~~~Ge~~~---------- 67 (337)
.|++.-...=|+||||+|||.||-.+|-...+ ..+.++... + ...+.-+..+
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV 112 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence 46766666779999999999999988765432 355555432 1 1111111111
Q ss_pred ----HHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 68 ----LIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 68 ----~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
.+..+.......+...+-.+|+||-|-+++.
T Consensus 113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred CCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence 1112333333344466788999999988763
No 491
>PLN02199 shikimate kinase
Probab=96.63 E-value=0.0022 Score=61.11 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 567999999999999999999999999988665
No 492
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.62 E-value=0.024 Score=52.13 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~ 44 (337)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999988764
No 493
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.01 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+-..+.|.||.|+|||+|.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999998864
No 494
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.61 E-value=0.0052 Score=53.61 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=34.4
Q ss_pred EcCCCchHHHHHHHHHHHhC-CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694 27 WGGKGQGKSFQCELVFAKMG-INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 91 (337)
Q Consensus 27 ~GpPGtGKT~lA~aiA~~l~-~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID 91 (337)
.+.+||||||++.++++-++ +.- +...++..+ ...+.+.. +.+++.+....+||+|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgH--vQnDnI~~k---~~~~f~~~----~l~~L~~~~~~vViaD 61 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGH--VQNDNITGK---RKPKFIKA----VLELLAKDTHPVVIAD 61 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCc--cccCCCCCC---CHHHHHHH----HHHHHhhCCCCEEEEe
Confidence 57899999999999999988 543 333334333 23233333 3333455556677766
No 495
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.59 E-value=0.009 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELV 41 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~ai 41 (337)
..|.+..+|||.|||||.|.|.+
T Consensus 85 ~qP~I~~VYGPTG~GKSqLlRNL 107 (369)
T PF02456_consen 85 LQPFIGVVYGPTGSGKSQLLRNL 107 (369)
T ss_pred CCceEEEEECCCCCCHHHHHHHh
Confidence 56889999999999999999976
No 496
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0061 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.+.|.||+|+||||+++++-+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45678999999999999999988773
No 497
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.59 E-value=0.0071 Score=63.71 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 59 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~ 59 (337)
.|.-|+++|.||+|||++|++++.++ +...+.+++..+..
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 47889999999999999999999997 45677777766543
No 498
>PRK06761 hypothetical protein; Provisional
Probab=96.58 E-value=0.0026 Score=60.34 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
++.|.+.||||+||||+++.+++++....+.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 35789999999999999999999987654443
No 499
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0011 Score=66.49 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.++|++||||||||++|+-+..
T Consensus 199 HnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 199 HNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcEEEecCCCCchHHhhhhhcc
Confidence 5799999999999999997744
No 500
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.56 E-value=0.0026 Score=56.12 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=26.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
..+.|.||+|+|||+++++++..++.. .+++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd 35 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGD 35 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCc
Confidence 458899999999999999999998763 44444
Done!