Query 019694
Match_columns 337
No_of_seqs 333 out of 2367
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 7.1E-53 2.4E-57 398.0 21.8 277 1-277 16-292 (293)
2 4b4t_J 26S protease regulatory 100.0 3.6E-41 1.2E-45 329.6 22.0 177 15-207 176-360 (405)
3 4b4t_I 26S protease regulatory 100.0 3E-40 1E-44 324.5 20.8 177 15-207 210-394 (437)
4 4b4t_H 26S protease regulatory 100.0 9.9E-40 3.4E-44 323.5 21.7 177 15-207 237-421 (467)
5 4b4t_L 26S protease subunit RP 100.0 1.6E-39 5.3E-44 321.9 22.2 177 15-207 209-393 (437)
6 4b4t_M 26S protease regulatory 100.0 3.4E-40 1.2E-44 326.4 16.8 178 15-207 209-393 (434)
7 4b4t_K 26S protease regulatory 100.0 1.8E-38 6.2E-43 313.7 18.2 177 15-207 200-385 (428)
8 3cf2_A TER ATPase, transitiona 100.0 1.1E-36 3.8E-41 320.4 12.0 192 15-225 505-704 (806)
9 3cf2_A TER ATPase, transitiona 100.0 2E-34 6.9E-39 303.3 19.7 192 15-226 232-429 (806)
10 2ce7_A Cell division protein F 100.0 3.5E-30 1.2E-34 257.9 16.2 177 15-207 43-227 (476)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.1E-29 2.8E-33 236.4 23.4 188 17-225 41-236 (322)
12 2x8a_A Nuclear valosin-contain 100.0 2.7E-29 9.2E-34 234.8 18.3 176 15-207 38-224 (274)
13 3cf0_A Transitional endoplasmi 100.0 1.8E-29 6.1E-34 238.4 15.0 176 16-207 44-227 (301)
14 3eie_A Vacuolar protein sortin 100.0 1.1E-28 3.9E-33 234.8 20.6 191 16-227 46-243 (322)
15 2dhr_A FTSH; AAA+ protein, hex 100.0 2.3E-28 7.7E-33 246.1 13.6 230 15-267 58-303 (499)
16 2qp9_X Vacuolar protein sortin 100.0 2E-27 6.8E-32 229.7 19.2 188 16-224 79-273 (355)
17 3h4m_A Proteasome-activating n 99.9 1.6E-27 5.4E-32 221.5 15.8 178 16-207 46-229 (285)
18 2zan_A Vacuolar protein sortin 99.9 3.1E-27 1.1E-31 234.9 18.6 189 17-226 163-359 (444)
19 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.5E-27 5.1E-32 218.3 15.1 175 16-206 34-219 (262)
20 1lv7_A FTSH; alpha/beta domain 99.9 1E-26 3.5E-31 213.6 20.2 177 15-207 39-223 (257)
21 3hu3_A Transitional endoplasmi 99.9 4.1E-27 1.4E-31 236.8 16.7 175 16-207 233-413 (489)
22 1ypw_A Transitional endoplasmi 99.9 9E-28 3.1E-32 254.6 2.1 176 16-207 506-689 (806)
23 3b9p_A CG5977-PA, isoform A; A 99.9 5E-25 1.7E-29 206.0 16.9 173 19-207 52-231 (297)
24 3d8b_A Fidgetin-like protein 1 99.9 4.9E-25 1.7E-29 212.9 17.2 173 18-207 114-293 (357)
25 1ixz_A ATP-dependent metallopr 99.9 2.6E-25 8.9E-30 203.8 13.9 177 15-207 43-227 (254)
26 2r62_A Cell division protease 99.9 6.2E-27 2.1E-31 215.8 2.9 176 16-206 39-223 (268)
27 3vfd_A Spastin; ATPase, microt 99.9 1.1E-24 3.6E-29 212.5 17.4 172 19-207 146-324 (389)
28 3thg_A Ribulose bisphosphate c 99.9 2.3E-25 8E-30 175.2 8.6 103 170-272 5-107 (107)
29 1iy2_A ATP-dependent metallopr 99.9 3E-24 1E-28 199.8 14.6 176 15-206 67-250 (278)
30 1ypw_A Transitional endoplasmi 99.9 2.3E-22 7.8E-27 213.2 21.1 176 15-207 232-413 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 7.4E-24 2.5E-28 211.0 -6.3 174 16-206 58-257 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 1.8E-19 6.2E-24 166.6 11.9 167 13-200 56-229 (272)
33 3syl_A Protein CBBX; photosynt 99.8 7.8E-19 2.7E-23 164.4 15.6 153 18-196 64-232 (309)
34 3m6a_A ATP-dependent protease 99.8 2.5E-18 8.4E-23 174.9 12.9 166 20-202 107-297 (543)
35 1ofh_A ATP-dependent HSL prote 99.7 8.6E-18 2.9E-22 156.6 12.5 157 19-181 48-213 (310)
36 1g41_A Heat shock protein HSLU 99.7 1.4E-18 4.6E-23 172.3 7.2 134 20-179 49-188 (444)
37 3hws_A ATP-dependent CLP prote 99.7 3.8E-18 1.3E-22 164.5 5.3 160 19-181 49-267 (363)
38 1jbk_A CLPB protein; beta barr 99.7 4.4E-17 1.5E-21 139.7 8.2 135 19-179 41-194 (195)
39 3uk6_A RUVB-like 2; hexameric 99.7 8.3E-16 2.8E-20 147.2 16.4 148 17-193 66-284 (368)
40 3pfi_A Holliday junction ATP-d 99.7 8.2E-16 2.8E-20 145.8 15.8 158 19-203 53-219 (338)
41 4fcw_A Chaperone protein CLPB; 99.6 9.2E-15 3.1E-19 136.6 14.2 158 20-200 46-258 (311)
42 2p65_A Hypothetical protein PF 99.6 2.2E-15 7.4E-20 129.1 9.1 124 19-169 41-183 (187)
43 1hqc_A RUVB; extended AAA-ATPa 99.6 1.2E-14 4E-19 136.6 14.6 156 19-200 36-200 (324)
44 3pxg_A Negative regulator of g 99.6 6.1E-15 2.1E-19 147.2 11.7 143 19-203 199-367 (468)
45 1um8_A ATP-dependent CLP prote 99.6 6.5E-15 2.2E-19 142.3 10.5 140 19-159 70-220 (376)
46 1l8q_A Chromosomal replication 99.6 5.7E-15 2E-19 139.6 9.8 163 8-200 25-198 (324)
47 3pvs_A Replication-associated 99.6 1.8E-14 6.3E-19 143.1 13.9 127 22-185 51-180 (447)
48 1r6b_X CLPA protein; AAA+, N-t 99.6 2.2E-14 7.4E-19 150.8 15.1 158 19-202 205-390 (758)
49 3u61_B DNA polymerase accessor 99.6 2.2E-14 7.5E-19 135.3 12.7 137 8-181 37-176 (324)
50 3pxi_A Negative regulator of g 99.6 5.9E-14 2E-18 147.6 17.2 137 23-184 523-676 (758)
51 1qvr_A CLPB protein; coiled co 99.6 5.6E-15 1.9E-19 157.5 9.5 157 19-202 189-373 (854)
52 3te6_A Regulatory protein SIR3 99.5 4.5E-14 1.6E-18 134.4 13.6 138 18-184 42-212 (318)
53 3pxi_A Negative regulator of g 99.5 1.8E-14 6.1E-19 151.6 11.8 125 19-185 199-340 (758)
54 2chg_A Replication factor C sm 99.5 1.4E-13 5E-18 120.3 15.0 141 23-198 40-191 (226)
55 2qby_B CDC6 homolog 3, cell di 99.5 3.5E-14 1.2E-18 136.1 11.9 153 19-202 43-236 (384)
56 1r6b_X CLPA protein; AAA+, N-t 99.5 3.2E-14 1.1E-18 149.5 12.6 143 21-184 488-667 (758)
57 2v1u_A Cell division control p 99.5 9.6E-14 3.3E-18 132.5 13.3 155 19-198 42-236 (387)
58 2z4s_A Chromosomal replication 99.5 4.1E-14 1.4E-18 140.2 9.5 164 8-202 119-297 (440)
59 1sxj_A Activator 1 95 kDa subu 99.5 4.4E-14 1.5E-18 142.6 7.5 153 19-200 75-241 (516)
60 1njg_A DNA polymerase III subu 99.5 3.6E-13 1.2E-17 118.9 11.4 146 19-193 43-210 (250)
61 2chq_A Replication factor C sm 99.4 1.2E-12 4.1E-17 121.9 13.4 144 24-202 41-195 (319)
62 1sxj_B Activator 1 37 kDa subu 99.4 7.5E-13 2.6E-17 123.5 11.8 151 19-205 41-206 (323)
63 3bos_A Putative DNA replicatio 99.4 5.8E-13 2E-17 118.6 10.2 145 20-202 51-208 (242)
64 1qvr_A CLPB protein; coiled co 99.4 1.2E-12 4E-17 139.6 13.9 143 22-184 589-771 (854)
65 1g8p_A Magnesium-chelatase 38 99.4 1.8E-13 6.1E-18 129.7 6.3 147 21-183 45-232 (350)
66 1sxj_D Activator 1 41 kDa subu 99.4 3.7E-12 1.3E-16 120.6 14.8 139 24-197 61-221 (353)
67 2r44_A Uncharacterized protein 99.4 5.3E-13 1.8E-17 126.3 7.5 142 21-185 46-200 (331)
68 3n70_A Transport activator; si 99.4 1.4E-12 4.7E-17 109.5 8.7 91 20-150 23-116 (145)
69 1in4_A RUVB, holliday junction 99.3 2E-11 6.9E-16 116.3 16.9 157 19-202 49-214 (334)
70 2qby_A CDC6 homolog 1, cell di 99.3 9E-12 3.1E-16 118.5 14.1 154 19-198 43-232 (386)
71 1fnn_A CDC6P, cell division co 99.3 9.1E-12 3.1E-16 119.1 14.1 149 23-198 46-228 (389)
72 1a5t_A Delta prime, HOLB; zinc 99.3 6.6E-12 2.3E-16 119.7 12.9 153 18-205 21-202 (334)
73 1jr3_A DNA polymerase III subu 99.3 4.7E-12 1.6E-16 120.8 10.7 143 19-196 36-206 (373)
74 2bjv_A PSP operon transcriptio 99.3 1.3E-12 4.5E-17 119.8 6.5 135 20-175 28-182 (265)
75 1iqp_A RFCS; clamp loader, ext 99.3 6.7E-12 2.3E-16 117.2 11.2 140 23-197 48-198 (327)
76 1ojl_A Transcriptional regulat 99.3 7.1E-12 2.4E-16 118.2 10.4 159 19-202 23-219 (304)
77 3f9v_A Minichromosome maintena 99.3 4.6E-13 1.6E-17 137.5 2.0 138 23-185 329-492 (595)
78 4akg_A Glutathione S-transfera 99.3 3.6E-12 1.2E-16 148.0 9.1 143 20-184 1266-1432(2695)
79 3co5_A Putative two-component 99.3 8.8E-13 3E-17 110.6 3.0 91 20-150 26-116 (143)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 4.8E-12 1.6E-16 127.3 8.6 140 21-183 41-196 (500)
81 1sxj_E Activator 1 40 kDa subu 99.3 5E-11 1.7E-15 113.2 13.9 135 19-188 35-211 (354)
82 2gno_A DNA polymerase III, gam 99.2 2.8E-11 9.6E-16 114.4 10.2 160 6-206 6-171 (305)
83 1sxj_C Activator 1 40 kDa subu 99.2 1.4E-10 4.9E-15 110.2 14.6 137 19-191 45-192 (340)
84 3cmw_A Protein RECA, recombina 99.1 9.6E-11 3.3E-15 131.4 9.4 115 20-151 1079-1219(1706)
85 3ec2_A DNA replication protein 99.1 3.4E-10 1.2E-14 97.6 10.7 85 4-96 21-112 (180)
86 2vhj_A Ntpase P4, P4; non- hyd 99.0 1.9E-10 6.6E-15 109.3 6.9 123 16-157 118-242 (331)
87 2w58_A DNAI, primosome compone 98.9 1.5E-09 5.3E-14 94.9 7.9 83 8-96 40-127 (202)
88 1w5s_A Origin recognition comp 98.9 2.5E-09 8.6E-14 103.0 10.0 157 20-198 49-250 (412)
89 1svm_A Large T antigen; AAA+ f 98.9 3.7E-09 1.3E-13 102.7 8.9 121 16-172 164-285 (377)
90 2qgz_A Helicase loader, putati 98.9 1.3E-09 4.4E-14 102.9 4.7 83 8-96 139-226 (308)
91 1tue_A Replication protein E1; 98.9 2.5E-09 8.5E-14 95.5 6.1 112 6-150 45-157 (212)
92 2kjq_A DNAA-related protein; s 98.8 2.7E-09 9.3E-14 90.2 4.7 58 20-96 35-95 (149)
93 2r2a_A Uncharacterized protein 98.8 1.8E-08 6.1E-13 89.4 9.1 125 20-169 4-150 (199)
94 3k1j_A LON protease, ATP-depen 98.7 2.6E-08 8.7E-13 102.3 10.3 26 22-47 61-86 (604)
95 3cmu_A Protein RECA, recombina 98.6 4E-08 1.4E-12 111.6 7.5 103 16-122 1422-1548(2050)
96 2qen_A Walker-type ATPase; unk 98.6 2.9E-07 9.8E-12 86.1 12.2 157 22-202 32-240 (350)
97 4akg_A Glutathione S-transfera 98.6 2E-07 6.7E-12 108.9 13.0 141 20-180 644-790 (2695)
98 2fna_A Conserved hypothetical 98.5 9.5E-07 3.3E-11 82.6 14.2 153 22-203 31-245 (357)
99 1ny5_A Transcriptional regulat 98.5 3.3E-07 1.1E-11 89.0 10.1 129 21-175 160-313 (387)
100 3vkg_A Dynein heavy chain, cyt 98.5 8.8E-08 3E-12 112.6 5.2 141 21-183 1304-1469(3245)
101 1u0j_A DNA replication protein 98.4 1.1E-06 3.9E-11 81.2 10.5 41 6-47 90-130 (267)
102 3f8t_A Predicted ATPase involv 98.2 2.7E-07 9.3E-12 91.7 2.4 123 23-175 241-386 (506)
103 2cvh_A DNA repair and recombin 98.2 3.9E-06 1.3E-10 73.5 9.7 41 16-56 15-55 (220)
104 3dzd_A Transcriptional regulat 98.2 1.6E-06 5.6E-11 83.6 7.8 128 22-175 153-304 (368)
105 1qhx_A CPT, protein (chloramph 98.2 2.2E-06 7.4E-11 72.9 6.3 34 21-54 3-36 (178)
106 1ye8_A Protein THEP1, hypothet 98.1 2.1E-05 7.3E-10 68.0 11.2 27 23-49 2-28 (178)
107 3hr8_A Protein RECA; alpha and 98.1 1.1E-05 3.7E-10 77.7 9.3 83 16-98 56-153 (356)
108 3vkg_A Dynein heavy chain, cyt 98.1 2.2E-05 7.4E-10 92.8 13.5 141 21-180 604-750 (3245)
109 3cmu_A Protein RECA, recombina 98.1 6E-06 2E-10 94.1 8.5 82 17-98 728-824 (2050)
110 2p5t_B PEZT; postsegregational 98.0 1.6E-05 5.5E-10 72.3 9.1 52 6-57 16-68 (253)
111 2zr9_A Protein RECA, recombina 98.0 3.5E-06 1.2E-10 80.8 4.7 83 16-98 56-153 (349)
112 1xp8_A RECA protein, recombina 98.0 2.3E-05 7.9E-10 75.6 10.1 83 16-98 69-166 (366)
113 1gvn_B Zeta; postsegregational 98.0 7.4E-06 2.5E-10 76.3 5.6 56 3-58 14-70 (287)
114 3trf_A Shikimate kinase, SK; a 97.9 6.6E-06 2.3E-10 70.4 4.3 34 20-53 4-37 (185)
115 2rhm_A Putative kinase; P-loop 97.9 8.6E-06 2.9E-10 69.9 5.0 35 17-51 1-35 (193)
116 3cmw_A Protein RECA, recombina 97.9 1.4E-05 4.8E-10 90.1 7.7 83 16-98 727-824 (1706)
117 1u94_A RECA protein, recombina 97.9 1.2E-05 4.2E-10 77.3 6.3 83 16-98 58-155 (356)
118 2w0m_A SSO2452; RECA, SSPF, un 97.9 8.3E-05 2.8E-09 65.1 10.6 38 16-53 18-58 (235)
119 2z43_A DNA repair and recombin 97.9 2.6E-05 8.9E-10 73.6 7.7 82 16-97 102-216 (324)
120 1n0w_A DNA repair protein RAD5 97.9 3.4E-05 1.2E-09 68.4 8.0 83 16-98 19-133 (243)
121 3vaa_A Shikimate kinase, SK; s 97.8 1.3E-05 4.5E-10 69.9 4.4 36 18-53 22-57 (199)
122 3iij_A Coilin-interacting nucl 97.8 1.4E-05 4.8E-10 68.3 4.3 35 18-52 8-42 (180)
123 3a4m_A L-seryl-tRNA(SEC) kinas 97.8 4.8E-05 1.6E-09 69.4 8.1 39 20-58 3-44 (260)
124 1v5w_A DMC1, meiotic recombina 97.8 4.4E-05 1.5E-09 72.7 7.9 83 16-98 117-233 (343)
125 3io5_A Recombination and repai 97.8 3.2E-05 1.1E-09 73.3 6.3 83 16-99 24-126 (333)
126 2cdn_A Adenylate kinase; phosp 97.7 2.3E-05 7.7E-10 68.2 4.8 35 18-52 17-51 (201)
127 3umf_A Adenylate kinase; rossm 97.7 2E-05 6.9E-10 70.6 4.4 41 15-57 23-63 (217)
128 1pzn_A RAD51, DNA repair and r 97.7 6.9E-05 2.4E-09 71.7 8.5 82 16-97 126-244 (349)
129 1tev_A UMP-CMP kinase; ploop, 97.7 1.9E-05 6.5E-10 67.5 4.0 31 21-51 3-33 (196)
130 2iyv_A Shikimate kinase, SK; t 97.7 1.7E-05 6E-10 67.8 3.7 32 22-53 3-34 (184)
131 2ehv_A Hypothetical protein PH 97.7 0.00014 4.9E-09 64.5 9.8 26 17-42 26-51 (251)
132 3kb2_A SPBC2 prophage-derived 97.7 2.8E-05 9.4E-10 65.2 4.5 32 22-53 2-33 (173)
133 1jr3_D DNA polymerase III, del 97.7 0.00025 8.5E-09 66.9 11.7 146 19-202 16-176 (343)
134 1qf9_A UMP/CMP kinase, protein 97.7 2.8E-05 9.7E-10 66.3 4.3 34 19-52 4-37 (194)
135 2c95_A Adenylate kinase 1; tra 97.7 2.5E-05 8.6E-10 67.1 3.9 33 20-52 8-40 (196)
136 1zuh_A Shikimate kinase; alpha 97.6 3E-05 1E-09 65.4 4.1 32 21-52 7-38 (168)
137 1aky_A Adenylate kinase; ATP:A 97.6 2.9E-05 9.8E-10 68.6 4.1 33 20-52 3-35 (220)
138 1y63_A LMAJ004144AAA protein; 97.6 2.7E-05 9.3E-10 67.1 3.8 32 21-52 10-42 (184)
139 1zp6_A Hypothetical protein AT 97.6 2.6E-05 8.9E-10 66.9 3.7 40 17-56 5-44 (191)
140 1ly1_A Polynucleotide kinase; 97.6 2.4E-05 8.2E-10 66.1 3.3 28 21-48 2-30 (181)
141 3lda_A DNA repair protein RAD5 97.6 0.00012 4.2E-09 71.4 8.8 83 16-98 173-287 (400)
142 1kag_A SKI, shikimate kinase I 97.6 3E-05 1E-09 65.5 3.9 30 21-50 4-33 (173)
143 1via_A Shikimate kinase; struc 97.6 2.6E-05 9E-10 66.3 3.5 29 23-51 6-34 (175)
144 1z6t_A APAF-1, apoptotic prote 97.6 0.00072 2.5E-08 68.2 14.6 24 20-43 146-169 (591)
145 1zd8_A GTP:AMP phosphotransfer 97.6 2.8E-05 9.6E-10 69.1 3.6 34 19-52 5-38 (227)
146 2vli_A Antibiotic resistance p 97.6 2.6E-05 8.9E-10 66.3 3.2 30 21-50 5-34 (183)
147 3lw7_A Adenylate kinase relate 97.6 3.2E-05 1.1E-09 64.5 3.6 30 22-52 2-31 (179)
148 2bwj_A Adenylate kinase 5; pho 97.6 3.1E-05 1.1E-09 66.6 3.7 33 20-52 11-43 (199)
149 3t61_A Gluconokinase; PSI-biol 97.6 4.1E-05 1.4E-09 66.6 4.4 32 20-51 17-48 (202)
150 1ukz_A Uridylate kinase; trans 97.6 4.1E-05 1.4E-09 66.5 4.1 34 19-52 13-46 (203)
151 4a74_A DNA repair and recombin 97.6 0.00016 5.4E-09 63.4 7.9 30 16-45 20-49 (231)
152 2zts_A Putative uncharacterize 97.6 0.00017 5.7E-09 64.0 8.1 40 16-55 25-68 (251)
153 3tlx_A Adenylate kinase 2; str 97.6 4.2E-05 1.4E-09 69.1 4.2 34 19-52 27-60 (243)
154 1e6c_A Shikimate kinase; phosp 97.6 3.6E-05 1.2E-09 64.8 3.5 31 22-52 3-33 (173)
155 1kht_A Adenylate kinase; phosp 97.6 3.2E-05 1.1E-09 66.0 3.2 26 21-46 3-28 (192)
156 3cm0_A Adenylate kinase; ATP-b 97.6 3.9E-05 1.3E-09 65.5 3.7 31 21-51 4-34 (186)
157 2bbw_A Adenylate kinase 4, AK4 97.6 5.6E-05 1.9E-09 68.1 4.9 43 8-51 15-57 (246)
158 2i1q_A DNA repair and recombin 97.5 0.00011 3.9E-09 68.8 6.9 29 16-44 93-121 (322)
159 2ze6_A Isopentenyl transferase 97.5 5.7E-05 1.9E-09 68.8 4.6 33 22-54 2-34 (253)
160 2a5y_B CED-4; apoptosis; HET: 97.5 0.0024 8.3E-08 64.2 16.9 25 19-43 150-174 (549)
161 1ak2_A Adenylate kinase isoenz 97.5 5.8E-05 2E-09 67.5 4.2 33 20-52 15-47 (233)
162 3dl0_A Adenylate kinase; phosp 97.5 5.1E-05 1.7E-09 66.6 3.8 30 23-52 2-31 (216)
163 2ga8_A Hypothetical 39.9 kDa p 97.5 3.2E-05 1.1E-09 74.3 2.6 50 2-51 5-54 (359)
164 3fb4_A Adenylate kinase; psych 97.5 5.5E-05 1.9E-09 66.3 3.9 30 23-52 2-31 (216)
165 3be4_A Adenylate kinase; malar 97.5 4.7E-05 1.6E-09 67.3 3.3 32 21-52 5-36 (217)
166 1g5t_A COB(I)alamin adenosyltr 97.5 0.00022 7.4E-09 62.9 7.4 119 23-169 30-177 (196)
167 2pt5_A Shikimate kinase, SK; a 97.5 6.4E-05 2.2E-09 63.1 3.8 30 23-52 2-31 (168)
168 1zak_A Adenylate kinase; ATP:A 97.5 4E-05 1.4E-09 67.8 2.4 31 20-50 4-34 (222)
169 2r6a_A DNAB helicase, replicat 97.4 0.00023 7.8E-09 70.3 7.9 39 16-54 198-240 (454)
170 3kw6_A 26S protease regulatory 97.4 0.00047 1.6E-08 51.2 7.8 39 169-207 2-44 (78)
171 1g41_A Heat shock protein HSLU 97.4 0.00032 1.1E-08 69.3 8.7 90 84-180 250-346 (444)
172 2dr3_A UPF0273 protein PH0284; 97.4 0.00024 8.1E-09 63.0 7.0 39 16-54 18-59 (247)
173 1knq_A Gluconate kinase; ALFA/ 97.4 0.00011 3.8E-09 62.1 4.6 30 21-50 8-37 (175)
174 4eun_A Thermoresistant glucoki 97.4 0.00011 3.7E-09 64.0 4.5 37 19-57 27-63 (200)
175 3sfz_A APAF-1, apoptotic pepti 97.4 0.0023 7.7E-08 69.4 15.8 26 19-44 145-170 (1249)
176 3crm_A TRNA delta(2)-isopenten 97.4 0.00054 1.9E-08 64.9 9.6 36 20-55 4-39 (323)
177 2krk_A 26S protease regulatory 97.4 0.0006 2.1E-08 52.0 7.9 38 170-207 11-52 (86)
178 3sr0_A Adenylate kinase; phosp 97.4 0.00011 3.7E-09 65.2 4.3 33 23-57 2-34 (206)
179 2q6t_A DNAB replication FORK h 97.4 0.00074 2.5E-08 66.3 10.6 39 16-54 195-237 (444)
180 2pez_A Bifunctional 3'-phospho 97.4 0.00016 5.3E-09 61.6 5.0 38 19-56 3-43 (179)
181 1e4v_A Adenylate kinase; trans 97.4 9.8E-05 3.4E-09 64.9 3.7 30 23-52 2-31 (214)
182 2b8t_A Thymidine kinase; deoxy 97.4 0.00012 4E-09 65.9 4.2 73 22-95 13-100 (223)
183 2v54_A DTMP kinase, thymidylat 97.4 0.00012 4.3E-09 63.1 4.2 34 20-53 3-37 (204)
184 1cke_A CK, MSSA, protein (cyti 97.3 0.00015 5E-09 63.9 4.6 30 21-50 5-34 (227)
185 2pbr_A DTMP kinase, thymidylat 97.3 0.00017 5.8E-09 61.5 4.7 31 23-53 2-35 (195)
186 3uie_A Adenylyl-sulfate kinase 97.3 0.00055 1.9E-08 59.4 7.5 39 19-57 23-64 (200)
187 2wwf_A Thymidilate kinase, put 97.3 9.4E-05 3.2E-09 64.3 2.4 32 19-50 8-39 (212)
188 3ake_A Cytidylate kinase; CMP 97.3 0.00021 7.2E-09 61.8 4.6 30 23-52 4-33 (208)
189 1uj2_A Uridine-cytidine kinase 97.3 0.00017 6E-09 65.1 4.2 41 19-59 20-68 (252)
190 2plr_A DTMP kinase, probable t 97.3 0.00018 6.3E-09 62.2 4.2 28 21-48 4-31 (213)
191 2jaq_A Deoxyguanosine kinase; 97.3 0.00016 5.5E-09 62.2 3.7 28 23-50 2-29 (205)
192 1nks_A Adenylate kinase; therm 97.3 0.0001 3.6E-09 62.7 2.5 25 22-46 2-26 (194)
193 2xb4_A Adenylate kinase; ATP-b 97.2 0.00018 6.1E-09 63.9 4.0 30 23-52 2-31 (223)
194 3r20_A Cytidylate kinase; stru 97.2 0.00021 7E-09 64.7 4.4 32 20-51 8-39 (233)
195 2z0h_A DTMP kinase, thymidylat 97.2 0.00022 7.5E-09 61.1 4.4 31 23-53 2-35 (197)
196 1vma_A Cell division protein F 97.2 0.0012 4.2E-08 61.9 9.9 35 19-53 102-139 (306)
197 1jjv_A Dephospho-COA kinase; P 97.2 0.00017 6E-09 62.7 3.8 30 21-51 2-31 (206)
198 1uf9_A TT1252 protein; P-loop, 97.2 0.00019 6.4E-09 61.9 3.9 32 20-52 7-38 (203)
199 1nn5_A Similar to deoxythymidy 97.2 0.00011 3.9E-09 63.8 2.4 29 20-48 8-36 (215)
200 2if2_A Dephospho-COA kinase; a 97.2 0.00017 5.9E-09 62.5 3.5 30 23-53 3-32 (204)
201 3a8t_A Adenylate isopentenyltr 97.2 0.00076 2.6E-08 64.3 8.0 36 20-55 39-74 (339)
202 1m7g_A Adenylylsulfate kinase; 97.2 0.00086 3E-08 58.7 7.6 40 18-57 22-65 (211)
203 3bh0_A DNAB-like replicative h 97.2 0.0029 9.8E-08 59.3 11.7 39 16-54 63-104 (315)
204 1rz3_A Hypothetical protein rb 97.2 0.00069 2.3E-08 59.0 6.9 50 4-54 6-58 (201)
205 2qt1_A Nicotinamide riboside k 97.2 0.00021 7.2E-09 62.3 3.4 36 17-52 17-53 (207)
206 2r8r_A Sensor protein; KDPD, P 97.1 0.002 6.8E-08 58.0 9.8 34 21-54 6-42 (228)
207 3zvl_A Bifunctional polynucleo 97.1 0.00043 1.5E-08 67.6 5.8 37 19-57 256-292 (416)
208 2axn_A 6-phosphofructo-2-kinas 97.1 0.00049 1.7E-08 69.3 6.3 37 20-56 34-73 (520)
209 3c8u_A Fructokinase; YP_612366 97.1 0.00034 1.2E-08 61.3 4.5 41 4-46 7-47 (208)
210 2eyu_A Twitching motility prot 97.1 0.00052 1.8E-08 62.9 5.7 28 18-45 22-49 (261)
211 2grj_A Dephospho-COA kinase; T 97.1 0.00028 9.6E-09 61.8 3.6 33 21-53 12-44 (192)
212 1vht_A Dephospho-COA kinase; s 97.1 0.00039 1.3E-08 61.0 4.5 32 20-52 3-34 (218)
213 2yvu_A Probable adenylyl-sulfa 97.1 0.00044 1.5E-08 59.2 4.7 37 19-55 11-50 (186)
214 3dm5_A SRP54, signal recogniti 97.1 0.0015 5.2E-08 64.4 9.0 70 20-93 99-191 (443)
215 3foz_A TRNA delta(2)-isopenten 97.1 0.00046 1.6E-08 65.1 4.9 39 19-57 8-46 (316)
216 2h92_A Cytidylate kinase; ross 97.0 0.00032 1.1E-08 61.5 3.6 32 21-52 3-34 (219)
217 3bgw_A DNAB-like replicative h 97.0 0.0023 7.9E-08 63.0 9.9 39 17-55 193-234 (444)
218 3jvv_A Twitching mobility prot 97.0 0.00069 2.4E-08 65.0 6.0 68 22-93 124-205 (356)
219 1ltq_A Polynucleotide kinase; 97.0 0.00035 1.2E-08 64.4 3.7 30 21-50 2-32 (301)
220 4e22_A Cytidylate kinase; P-lo 97.0 0.00045 1.5E-08 62.6 4.4 30 21-50 27-56 (252)
221 1q57_A DNA primase/helicase; d 97.0 0.002 6.7E-08 64.2 9.5 39 17-55 238-280 (503)
222 1q3t_A Cytidylate kinase; nucl 97.0 0.00052 1.8E-08 61.3 4.7 34 18-51 13-46 (236)
223 2fz4_A DNA repair protein RAD2 97.0 0.0018 6E-08 58.1 8.1 33 23-55 110-142 (237)
224 2f6r_A COA synthase, bifunctio 97.0 0.0004 1.4E-08 64.2 3.8 32 20-52 74-105 (281)
225 3nwj_A ATSK2; P loop, shikimat 97.0 0.00041 1.4E-08 63.3 3.7 32 21-52 48-79 (250)
226 2j41_A Guanylate kinase; GMP, 96.9 0.00046 1.6E-08 59.5 3.6 28 18-45 3-30 (207)
227 2qor_A Guanylate kinase; phosp 96.9 0.00047 1.6E-08 60.1 3.6 28 19-46 10-37 (204)
228 2ewv_A Twitching motility prot 96.8 0.001 3.6E-08 64.0 5.4 28 18-45 133-160 (372)
229 4a1f_A DNAB helicase, replicat 96.8 0.0028 9.6E-08 60.3 8.1 39 16-54 41-82 (338)
230 3d3q_A TRNA delta(2)-isopenten 96.8 0.00079 2.7E-08 64.2 4.2 34 21-54 7-40 (340)
231 3kl4_A SRP54, signal recogniti 96.8 0.0023 7.9E-08 63.0 7.5 35 20-54 96-133 (433)
232 3exa_A TRNA delta(2)-isopenten 96.8 0.00085 2.9E-08 63.4 4.1 35 21-55 3-37 (322)
233 3tau_A Guanylate kinase, GMP k 96.8 0.00082 2.8E-08 58.9 3.8 29 19-47 6-34 (208)
234 3asz_A Uridine kinase; cytidin 96.8 0.00072 2.5E-08 58.8 3.4 33 19-51 4-38 (211)
235 3fdi_A Uncharacterized protein 96.8 0.00099 3.4E-08 58.5 4.2 30 22-51 7-36 (201)
236 2bdt_A BH3686; alpha-beta prot 96.7 0.00099 3.4E-08 57.0 4.1 26 22-47 3-28 (189)
237 3tqc_A Pantothenate kinase; bi 96.7 0.0018 6.3E-08 61.2 6.1 38 9-46 80-117 (321)
238 2iut_A DNA translocase FTSK; n 96.7 0.017 5.9E-07 58.6 13.6 35 22-56 215-256 (574)
239 3eph_A TRNA isopentenyltransfe 96.7 0.0011 3.9E-08 64.5 4.5 35 20-54 1-35 (409)
240 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.9E-08 56.6 4.0 26 21-46 5-30 (180)
241 1x6v_B Bifunctional 3'-phospho 96.7 0.0033 1.1E-07 64.6 8.1 38 20-57 51-91 (630)
242 3tr0_A Guanylate kinase, GMP k 96.7 0.0012 4.1E-08 56.9 4.0 34 20-55 6-39 (205)
243 3gmt_A Adenylate kinase; ssgci 96.7 0.00091 3.1E-08 60.4 3.3 30 23-52 10-39 (230)
244 1sq5_A Pantothenate kinase; P- 96.6 0.0018 6.3E-08 60.4 5.4 37 10-46 69-105 (308)
245 1odf_A YGR205W, hypothetical 3 96.6 0.0018 6.2E-08 60.2 5.1 30 17-46 27-56 (290)
246 3a00_A Guanylate kinase, GMP k 96.5 0.0013 4.6E-08 56.3 3.4 26 21-46 1-26 (186)
247 1tf7_A KAIC; homohexamer, hexa 96.5 0.016 5.6E-07 57.9 11.7 39 17-55 35-77 (525)
248 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0025 8.7E-08 60.3 5.3 70 21-94 171-250 (330)
249 2jeo_A Uridine-cytidine kinase 96.5 0.0019 6.4E-08 58.0 4.2 31 18-48 22-52 (245)
250 2qmh_A HPR kinase/phosphorylas 96.5 0.0013 4.4E-08 58.2 2.9 33 21-54 34-66 (205)
251 4eaq_A DTMP kinase, thymidylat 96.4 0.0025 8.4E-08 57.0 4.5 29 18-46 23-51 (229)
252 3hdt_A Putative kinase; struct 96.4 0.002 6.9E-08 57.7 3.9 31 21-51 14-44 (223)
253 2j37_W Signal recognition part 96.4 0.0084 2.9E-07 60.0 8.6 36 19-54 99-137 (504)
254 1gtv_A TMK, thymidylate kinase 96.3 0.0012 4.1E-08 57.3 1.9 25 23-47 2-26 (214)
255 3vlf_B 26S protease regulatory 96.3 0.0017 5.7E-08 49.6 2.5 37 171-207 2-42 (88)
256 1m8p_A Sulfate adenylyltransfe 96.3 0.0075 2.6E-07 61.3 7.7 39 19-57 394-436 (573)
257 1a7j_A Phosphoribulokinase; tr 96.3 0.0015 5.1E-08 60.7 2.3 37 21-57 5-44 (290)
258 1bif_A 6-phosphofructo-2-kinas 96.3 0.0051 1.7E-07 60.8 6.2 30 19-48 37-66 (469)
259 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0062 2.1E-07 60.4 6.7 23 23-45 153-175 (473)
260 1lvg_A Guanylate kinase, GMP k 96.2 0.0023 7.7E-08 55.7 3.2 27 20-46 3-29 (198)
261 1znw_A Guanylate kinase, GMP k 96.2 0.003 1E-07 55.1 3.9 30 17-46 16-45 (207)
262 3ice_A Transcription terminati 96.2 0.012 4.2E-07 57.1 8.3 76 22-97 175-274 (422)
263 4gp7_A Metallophosphoesterase; 96.2 0.002 6.7E-08 54.7 2.4 22 19-40 7-28 (171)
264 1ex7_A Guanylate kinase; subst 96.2 0.0049 1.7E-07 53.6 4.9 25 24-48 4-28 (186)
265 1nlf_A Regulatory protein REPA 96.1 0.0026 8.7E-08 58.2 3.1 30 16-45 25-54 (279)
266 1cr0_A DNA primase/helicase; R 96.1 0.0034 1.1E-07 57.7 3.8 38 16-53 30-71 (296)
267 2ocp_A DGK, deoxyguanosine kin 96.1 0.0035 1.2E-07 55.9 3.8 26 21-46 2-27 (241)
268 3ney_A 55 kDa erythrocyte memb 96.1 0.0053 1.8E-07 54.0 4.8 27 20-46 18-44 (197)
269 1ls1_A Signal recognition part 96.1 0.02 6.8E-07 53.2 9.0 34 20-53 97-133 (295)
270 1z6g_A Guanylate kinase; struc 96.0 0.0036 1.2E-07 55.3 3.5 28 18-45 20-47 (218)
271 4f4c_A Multidrug resistance pr 96.0 0.022 7.5E-07 63.4 10.5 29 19-47 442-470 (1321)
272 2xxa_A Signal recognition part 96.0 0.019 6.5E-07 56.4 9.0 37 19-55 98-138 (433)
273 3e70_C DPA, signal recognition 96.0 0.02 6.7E-07 54.1 8.6 27 19-45 127-153 (328)
274 1j8m_F SRP54, signal recogniti 96.0 0.018 6E-07 53.6 8.1 34 21-54 98-134 (297)
275 1htw_A HI0065; nucleotide-bind 96.0 0.0054 1.8E-07 51.8 4.2 28 18-45 30-57 (158)
276 3aez_A Pantothenate kinase; tr 96.0 0.0049 1.7E-07 57.9 4.3 29 18-46 87-115 (312)
277 1p5z_B DCK, deoxycytidine kina 96.0 0.0018 6.2E-08 58.6 1.2 29 18-46 21-49 (263)
278 1vt4_I APAF-1 related killer D 95.9 0.032 1.1E-06 60.6 10.8 24 21-44 150-173 (1221)
279 1c9k_A COBU, adenosylcobinamid 95.9 0.0064 2.2E-07 52.7 4.6 32 24-56 2-33 (180)
280 3p32_A Probable GTPase RV1496/ 95.9 0.044 1.5E-06 52.0 10.7 33 20-52 78-113 (355)
281 3lnc_A Guanylate kinase, GMP k 95.8 0.0026 9E-08 56.3 1.7 27 19-45 25-52 (231)
282 4b3f_X DNA-binding protein smu 95.8 0.0064 2.2E-07 62.5 4.7 33 23-55 207-242 (646)
283 3b9q_A Chloroplast SRP recepto 95.8 0.0096 3.3E-07 55.6 5.5 28 18-45 97-124 (302)
284 3thx_B DNA mismatch repair pro 95.8 0.02 6.9E-07 61.3 8.6 26 18-43 670-695 (918)
285 2v9p_A Replication protein E1; 95.8 0.0065 2.2E-07 57.0 4.3 29 17-45 122-150 (305)
286 2oap_1 GSPE-2, type II secreti 95.8 0.0047 1.6E-07 62.0 3.4 71 20-94 259-343 (511)
287 1np6_A Molybdopterin-guanine d 95.8 0.0068 2.3E-07 52.1 3.9 27 19-45 4-30 (174)
288 1ewq_A DNA mismatch repair pro 95.7 0.047 1.6E-06 57.3 11.1 23 21-43 576-598 (765)
289 2gks_A Bifunctional SAT/APS ki 95.7 0.0093 3.2E-07 60.3 5.5 39 19-57 370-411 (546)
290 4i1u_A Dephospho-COA kinase; s 95.7 0.0061 2.1E-07 54.1 3.6 32 21-53 9-40 (210)
291 1p9r_A General secretion pathw 95.7 0.011 3.6E-07 57.9 5.5 71 22-93 168-245 (418)
292 3tqf_A HPR(Ser) kinase; transf 95.7 0.0071 2.4E-07 52.3 3.7 28 21-49 16-43 (181)
293 2orw_A Thymidine kinase; TMTK, 95.7 0.0093 3.2E-07 51.4 4.5 32 21-52 3-37 (184)
294 3upu_A ATP-dependent DNA helic 95.6 0.0057 1.9E-07 60.2 3.4 23 23-45 47-69 (459)
295 1s96_A Guanylate kinase, GMP k 95.6 0.0078 2.7E-07 53.5 3.9 28 19-46 14-41 (219)
296 2ius_A DNA translocase FTSK; n 95.6 0.11 3.8E-06 52.0 12.7 33 23-55 169-208 (512)
297 2i3b_A HCR-ntpase, human cance 95.6 0.0069 2.4E-07 52.6 3.4 23 23-45 3-25 (189)
298 1xjc_A MOBB protein homolog; s 95.6 0.0086 2.9E-07 51.3 3.8 33 21-53 4-39 (169)
299 3thx_A DNA mismatch repair pro 95.5 0.057 2E-06 57.9 10.9 22 21-42 662-683 (934)
300 3ch4_B Pmkase, phosphomevalona 95.5 0.0068 2.3E-07 53.5 3.1 39 17-55 7-46 (202)
301 4edh_A DTMP kinase, thymidylat 95.5 0.0089 3.1E-07 52.9 4.0 33 20-52 5-40 (213)
302 2og2_A Putative signal recogni 95.5 0.014 4.9E-07 55.9 5.6 28 18-45 154-181 (359)
303 1w4r_A Thymidine kinase; type 95.5 0.019 6.4E-07 50.4 5.8 36 20-55 19-57 (195)
304 3aji_B S6C, proteasome (prosom 95.4 0.0092 3.2E-07 44.5 3.2 37 171-207 2-42 (83)
305 1rj9_A FTSY, signal recognitio 95.4 0.012 4E-07 55.1 4.5 26 20-45 101-126 (304)
306 1wb9_A DNA mismatch repair pro 95.4 0.079 2.7E-06 55.9 11.2 25 20-44 606-630 (800)
307 3e1s_A Exodeoxyribonuclease V, 95.4 0.0087 3E-07 60.8 3.8 34 21-54 204-240 (574)
308 3tmk_A Thymidylate kinase; pho 95.3 0.016 5.4E-07 51.5 4.9 31 20-50 4-34 (216)
309 1zu4_A FTSY; GTPase, signal re 95.3 0.019 6.6E-07 54.0 5.8 37 18-54 102-141 (320)
310 2yhs_A FTSY, cell division pro 95.3 0.018 6.3E-07 57.4 5.8 28 18-45 290-317 (503)
311 3v9p_A DTMP kinase, thymidylat 95.3 0.015 5E-07 52.2 4.5 26 20-45 24-49 (227)
312 2px0_A Flagellar biosynthesis 95.3 0.011 3.8E-07 55.0 3.8 37 19-55 103-143 (296)
313 3kta_A Chromosome segregation 95.3 0.012 4E-07 49.7 3.7 27 21-47 26-52 (182)
314 3vkw_A Replicase large subunit 95.3 0.038 1.3E-06 54.4 7.7 26 18-43 158-183 (446)
315 3lv8_A DTMP kinase, thymidylat 95.2 0.012 4E-07 53.1 3.7 27 20-46 26-52 (236)
316 2onk_A Molybdate/tungstate ABC 95.1 0.012 4E-07 53.1 3.2 28 18-46 22-49 (240)
317 2ffh_A Protein (FFH); SRP54, s 95.0 0.075 2.6E-06 52.0 9.1 35 20-54 97-134 (425)
318 1g8f_A Sulfate adenylyltransfe 95.0 0.012 4.2E-07 59.0 3.4 28 20-47 394-421 (511)
319 2cbz_A Multidrug resistance-as 94.9 0.012 4.1E-07 52.9 2.8 28 18-45 28-55 (237)
320 3ld9_A DTMP kinase, thymidylat 94.9 0.019 6.4E-07 51.4 4.1 33 19-51 19-55 (223)
321 2gk6_A Regulator of nonsense t 94.9 0.013 4.3E-07 60.1 3.4 23 23-45 197-219 (624)
322 2f1r_A Molybdopterin-guanine d 94.9 0.012 4E-07 50.4 2.6 25 22-46 3-27 (171)
323 3cr8_A Sulfate adenylyltranfer 94.9 0.013 4.3E-07 59.4 3.1 40 18-57 366-409 (552)
324 3tif_A Uncharacterized ABC tra 94.8 0.013 4.5E-07 52.5 2.8 29 18-46 28-56 (235)
325 2pcj_A ABC transporter, lipopr 94.8 0.01 3.5E-07 52.8 2.1 27 20-46 29-55 (224)
326 2c9o_A RUVB-like 1; hexameric 94.7 0.062 2.1E-06 52.7 7.7 70 85-184 296-380 (456)
327 1b0u_A Histidine permease; ABC 94.7 0.015 5E-07 53.1 2.8 28 19-46 30-57 (262)
328 1mv5_A LMRA, multidrug resista 94.6 0.015 5.2E-07 52.3 2.8 28 18-45 25-52 (243)
329 2f9l_A RAB11B, member RAS onco 94.6 0.019 6.4E-07 49.1 3.3 23 22-44 6-28 (199)
330 1lw7_A Transcriptional regulat 94.6 0.019 6.5E-07 54.6 3.6 28 21-48 170-197 (365)
331 1oix_A RAS-related protein RAB 94.6 0.018 6.1E-07 49.1 3.0 24 22-45 30-53 (191)
332 2zu0_C Probable ATP-dependent 94.6 0.019 6.5E-07 52.5 3.3 27 18-44 43-69 (267)
333 3b85_A Phosphate starvation-in 94.6 0.014 4.9E-07 51.4 2.4 25 20-44 21-45 (208)
334 2dyk_A GTP-binding protein; GT 94.5 0.021 7.2E-07 46.3 3.2 22 23-44 3-24 (161)
335 4tmk_A Protein (thymidylate ki 94.5 0.022 7.6E-07 50.4 3.5 25 21-45 3-27 (213)
336 2ghi_A Transport protein; mult 94.5 0.017 5.8E-07 52.6 2.8 27 19-45 44-70 (260)
337 2o8b_B DNA mismatch repair pro 94.5 0.2 6.9E-06 54.2 11.6 22 21-42 789-810 (1022)
338 2p67_A LAO/AO transport system 94.5 0.1 3.5E-06 49.1 8.3 28 18-45 53-80 (341)
339 2d2e_A SUFC protein; ABC-ATPas 94.5 0.017 5.9E-07 52.2 2.8 26 19-44 27-52 (250)
340 1w36_D RECD, exodeoxyribonucle 94.5 0.021 7E-07 58.4 3.7 25 21-45 164-188 (608)
341 2olj_A Amino acid ABC transpor 94.5 0.017 5.9E-07 52.8 2.8 37 19-55 48-86 (263)
342 2ixe_A Antigen peptide transpo 94.4 0.018 6.2E-07 52.8 2.8 28 19-46 43-70 (271)
343 1g6h_A High-affinity branched- 94.4 0.016 5.4E-07 52.7 2.3 27 20-46 32-58 (257)
344 1z2a_A RAS-related protein RAB 94.4 0.024 8.2E-07 46.2 3.3 24 21-44 5-28 (168)
345 1nrj_B SR-beta, signal recogni 94.4 0.029 9.9E-07 48.4 3.9 26 20-45 11-36 (218)
346 2ff7_A Alpha-hemolysin translo 94.4 0.016 5.5E-07 52.4 2.3 28 19-46 33-60 (247)
347 2pze_A Cystic fibrosis transme 94.4 0.016 5.6E-07 51.6 2.3 27 20-46 33-59 (229)
348 1ji0_A ABC transporter; ATP bi 94.4 0.016 5.6E-07 52.0 2.3 27 20-46 31-57 (240)
349 1yrb_A ATP(GTP)binding protein 94.4 0.045 1.5E-06 48.7 5.2 35 19-53 12-48 (262)
350 1sgw_A Putative ABC transporte 94.3 0.018 6.2E-07 51.0 2.5 27 20-46 34-60 (214)
351 2v3c_C SRP54, signal recogniti 94.3 0.016 5.6E-07 56.8 2.4 36 20-55 98-136 (432)
352 1kao_A RAP2A; GTP-binding prot 94.3 0.025 8.6E-07 45.8 3.2 23 22-44 4-26 (167)
353 3l0o_A Transcription terminati 94.3 0.12 4E-06 50.3 8.3 74 23-96 177-274 (427)
354 1vpl_A ABC transporter, ATP-bi 94.3 0.02 6.9E-07 52.1 2.8 28 19-46 39-66 (256)
355 2ce2_X GTPase HRAS; signaling 94.3 0.024 8.2E-07 45.8 3.0 23 22-44 4-26 (166)
356 2yz2_A Putative ABC transporte 94.3 0.021 7E-07 52.2 2.8 27 19-45 31-57 (266)
357 2vp4_A Deoxynucleoside kinase; 94.3 0.025 8.7E-07 50.0 3.3 26 19-44 18-43 (230)
358 1dek_A Deoxynucleoside monopho 94.3 0.017 6E-07 52.2 2.3 28 22-49 2-29 (241)
359 2ged_A SR-beta, signal recogni 94.2 0.034 1.1E-06 46.8 3.9 27 19-45 46-72 (193)
360 3gfo_A Cobalt import ATP-bindi 94.2 0.018 6.1E-07 53.1 2.3 27 20-46 33-59 (275)
361 1moz_A ARL1, ADP-ribosylation 94.2 0.035 1.2E-06 46.1 3.9 24 19-42 16-39 (183)
362 3fvq_A Fe(3+) IONS import ATP- 94.2 0.023 8E-07 54.4 3.1 26 20-45 29-54 (359)
363 1u8z_A RAS-related protein RAL 94.2 0.028 9.6E-07 45.5 3.2 24 21-44 4-27 (168)
364 3sop_A Neuronal-specific septi 94.2 0.025 8.5E-07 51.8 3.2 24 23-46 4-27 (270)
365 1ek0_A Protein (GTP-binding pr 94.2 0.028 9.7E-07 45.7 3.2 23 22-44 4-26 (170)
366 3d31_A Sulfate/molybdate ABC t 94.2 0.023 7.8E-07 54.2 3.0 27 19-45 24-50 (348)
367 2qi9_C Vitamin B12 import ATP- 94.2 0.019 6.4E-07 52.1 2.3 27 20-46 25-51 (249)
368 2yyz_A Sugar ABC transporter, 94.2 0.026 8.8E-07 54.1 3.4 27 19-45 27-53 (359)
369 4g1u_C Hemin import ATP-bindin 94.2 0.019 6.4E-07 52.6 2.3 28 19-46 35-62 (266)
370 2wjy_A Regulator of nonsense t 94.1 0.024 8.3E-07 59.8 3.4 23 23-45 373-395 (800)
371 2zej_A Dardarin, leucine-rich 94.1 0.022 7.5E-07 48.0 2.5 21 23-43 4-24 (184)
372 2wji_A Ferrous iron transport 94.1 0.027 9.3E-07 46.5 3.1 22 22-43 4-25 (165)
373 2it1_A 362AA long hypothetical 94.1 0.026 9E-07 54.1 3.3 28 19-46 27-54 (362)
374 2nq2_C Hypothetical ABC transp 94.1 0.019 6.7E-07 52.0 2.3 27 19-45 29-55 (253)
375 1z0j_A RAB-22, RAS-related pro 94.1 0.03 1E-06 45.7 3.2 25 21-45 6-30 (170)
376 2wsm_A Hydrogenase expression/ 94.1 0.033 1.1E-06 48.2 3.7 26 21-46 30-55 (221)
377 3k53_A Ferrous iron transport 94.1 0.089 3E-06 47.6 6.7 23 22-44 4-26 (271)
378 1tf7_A KAIC; homohexamer, hexa 94.1 0.023 7.9E-07 56.8 3.0 29 17-45 277-305 (525)
379 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.03 1E-06 46.2 3.2 24 21-44 7-30 (177)
380 2nzj_A GTP-binding protein REM 94.0 0.029 9.8E-07 46.1 3.0 24 21-44 4-27 (175)
381 1v43_A Sugar-binding transport 94.0 0.028 9.5E-07 54.1 3.3 27 19-45 35-61 (372)
382 1z08_A RAS-related protein RAB 94.0 0.031 1.1E-06 45.7 3.2 24 21-44 6-29 (170)
383 2qm8_A GTPase/ATPase; G protei 94.0 0.038 1.3E-06 52.2 4.2 28 18-45 52-79 (337)
384 4hlc_A DTMP kinase, thymidylat 94.0 0.052 1.8E-06 47.6 4.8 31 22-52 3-35 (205)
385 1ky3_A GTP-binding protein YPT 94.0 0.031 1.1E-06 46.1 3.2 25 20-44 7-31 (182)
386 3rlf_A Maltose/maltodextrin im 94.0 0.029 9.8E-07 54.2 3.3 27 19-45 27-53 (381)
387 1g16_A RAS-related protein SEC 94.0 0.03 1E-06 45.7 3.0 23 22-44 4-26 (170)
388 2ihy_A ABC transporter, ATP-bi 94.0 0.021 7.2E-07 52.6 2.3 27 20-46 46-72 (279)
389 1oxx_K GLCV, glucose, ABC tran 94.0 0.023 7.9E-07 54.2 2.6 27 19-45 29-55 (353)
390 1upt_A ARL1, ADP-ribosylation 93.9 0.043 1.5E-06 44.8 4.0 25 20-44 6-30 (171)
391 1z47_A CYSA, putative ABC-tran 93.9 0.025 8.7E-07 54.0 2.8 26 20-45 40-65 (355)
392 1r2q_A RAS-related protein RAB 93.9 0.034 1.1E-06 45.3 3.2 24 21-44 6-29 (170)
393 1r8s_A ADP-ribosylation factor 93.9 0.037 1.3E-06 45.0 3.4 21 24-44 3-23 (164)
394 2dzn_B 26S protease regulatory 93.9 0.016 5.6E-07 43.2 1.1 35 173-207 1-39 (82)
395 3q85_A GTP-binding protein REM 93.9 0.033 1.1E-06 45.5 3.1 21 23-43 4-24 (169)
396 2erx_A GTP-binding protein DI- 93.9 0.033 1.1E-06 45.4 3.0 22 22-43 4-25 (172)
397 1c1y_A RAS-related protein RAP 93.9 0.036 1.2E-06 45.1 3.2 23 22-44 4-26 (167)
398 1g29_1 MALK, maltose transport 93.8 0.028 9.5E-07 54.1 2.8 26 20-45 28-53 (372)
399 3q72_A GTP-binding protein RAD 93.8 0.03 1E-06 45.7 2.7 21 23-43 4-24 (166)
400 2gza_A Type IV secretion syste 93.8 0.025 8.6E-07 53.9 2.5 34 20-53 174-209 (361)
401 4f4c_A Multidrug resistance pr 93.8 0.14 4.8E-06 56.9 8.8 27 19-45 1103-1129(1321)
402 1f2t_A RAD50 ABC-ATPase; DNA d 93.8 0.04 1.4E-06 45.7 3.4 25 21-45 23-47 (149)
403 3bc1_A RAS-related protein RAB 93.8 0.038 1.3E-06 46.0 3.3 26 19-44 9-34 (195)
404 2lkc_A Translation initiation 93.7 0.047 1.6E-06 45.0 3.8 24 20-43 7-30 (178)
405 2y8e_A RAB-protein 6, GH09086P 93.7 0.036 1.2E-06 45.6 3.0 23 22-44 15-37 (179)
406 2hxs_A RAB-26, RAS-related pro 93.7 0.033 1.1E-06 45.9 2.8 24 21-44 6-29 (178)
407 2atv_A RERG, RAS-like estrogen 93.7 0.045 1.6E-06 46.3 3.8 26 19-44 26-51 (196)
408 1z0f_A RAB14, member RAS oncog 93.7 0.039 1.3E-06 45.4 3.2 25 21-45 15-39 (179)
409 2wjg_A FEOB, ferrous iron tran 93.7 0.036 1.2E-06 46.3 3.1 23 22-44 8-30 (188)
410 4dsu_A GTPase KRAS, isoform 2B 93.6 0.04 1.4E-06 45.8 3.2 25 21-45 4-28 (189)
411 2xzl_A ATP-dependent helicase 93.6 0.035 1.2E-06 58.6 3.4 33 23-55 377-413 (802)
412 2hf9_A Probable hydrogenase ni 93.6 0.048 1.6E-06 47.3 3.8 26 21-46 38-63 (226)
413 2a9k_A RAS-related protein RAL 93.6 0.041 1.4E-06 45.6 3.2 24 21-44 18-41 (187)
414 3clv_A RAB5 protein, putative; 93.6 0.05 1.7E-06 45.5 3.8 25 20-44 6-30 (208)
415 2pjz_A Hypothetical protein ST 93.6 0.031 1.1E-06 51.0 2.7 25 21-45 30-54 (263)
416 3con_A GTPase NRAS; structural 93.6 0.042 1.4E-06 46.1 3.2 23 22-44 22-44 (190)
417 3tw8_B RAS-related protein RAB 93.5 0.037 1.3E-06 45.6 2.9 23 21-43 9-31 (181)
418 3gd7_A Fusion complex of cysti 93.5 0.036 1.2E-06 53.6 3.1 27 18-44 44-70 (390)
419 2fn4_A P23, RAS-related protei 93.5 0.04 1.4E-06 45.4 3.0 24 21-44 9-32 (181)
420 1m7b_A RND3/RHOE small GTP-bin 93.5 0.039 1.4E-06 46.2 3.0 25 20-44 6-30 (184)
421 2bbs_A Cystic fibrosis transme 93.5 0.032 1.1E-06 51.7 2.6 27 19-45 62-88 (290)
422 2efe_B Small GTP-binding prote 93.5 0.043 1.5E-06 45.4 3.2 24 21-44 12-35 (181)
423 1zj6_A ADP-ribosylation factor 93.5 0.076 2.6E-06 44.5 4.8 25 19-43 14-38 (187)
424 3a1s_A Iron(II) transport prot 93.5 0.13 4.5E-06 46.4 6.6 22 22-43 6-27 (258)
425 2oil_A CATX-8, RAS-related pro 93.5 0.044 1.5E-06 46.1 3.3 25 20-44 24-48 (193)
426 2bme_A RAB4A, RAS-related prot 93.4 0.042 1.4E-06 45.7 3.0 24 21-44 10-33 (186)
427 3b1v_A Ferrous iron uptake tra 93.4 0.13 4.5E-06 46.9 6.6 23 22-44 4-26 (272)
428 3t1o_A Gliding protein MGLA; G 93.4 0.043 1.5E-06 45.9 3.1 25 21-45 14-38 (198)
429 3nh6_A ATP-binding cassette SU 93.4 0.033 1.1E-06 52.2 2.5 29 18-46 77-105 (306)
430 1ko7_A HPR kinase/phosphatase; 93.4 0.049 1.7E-06 51.2 3.7 29 21-50 144-172 (314)
431 3kkq_A RAS-related protein M-R 93.3 0.049 1.7E-06 45.3 3.2 24 21-44 18-41 (183)
432 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.049 1.7E-06 45.2 3.2 23 22-44 6-28 (186)
433 2g6b_A RAS-related protein RAB 93.3 0.05 1.7E-06 44.9 3.2 25 20-44 9-33 (180)
434 1pui_A ENGB, probable GTP-bind 93.3 0.029 1E-06 48.0 1.8 27 18-44 23-49 (210)
435 2obl_A ESCN; ATPase, hydrolase 93.3 0.062 2.1E-06 51.1 4.3 27 22-48 72-98 (347)
436 2xau_A PRE-mRNA-splicing facto 93.2 0.05 1.7E-06 57.2 3.9 23 22-44 110-132 (773)
437 2gj8_A MNME, tRNA modification 93.2 0.052 1.8E-06 45.3 3.2 24 21-44 4-27 (172)
438 2gf9_A RAS-related protein RAB 93.2 0.052 1.8E-06 45.6 3.2 24 21-44 22-45 (189)
439 3iby_A Ferrous iron transport 93.2 0.14 4.8E-06 46.2 6.3 22 23-44 3-24 (256)
440 2cxx_A Probable GTP-binding pr 93.2 0.044 1.5E-06 45.7 2.7 22 23-44 3-24 (190)
441 3tkl_A RAS-related protein RAB 93.1 0.053 1.8E-06 45.5 3.2 25 20-44 15-39 (196)
442 2dpy_A FLII, flagellum-specifi 93.1 0.066 2.2E-06 52.6 4.3 28 21-48 157-184 (438)
443 3dz8_A RAS-related protein RAB 93.1 0.053 1.8E-06 45.7 3.2 26 20-45 22-47 (191)
444 1m2o_B GTP-binding protein SAR 93.1 0.051 1.7E-06 46.1 3.0 24 21-44 23-46 (190)
445 2iwr_A Centaurin gamma 1; ANK 93.1 0.046 1.6E-06 45.2 2.7 24 21-44 7-30 (178)
446 2bov_A RAla, RAS-related prote 93.0 0.056 1.9E-06 45.8 3.2 24 21-44 14-37 (206)
447 2x77_A ADP-ribosylation factor 93.0 0.05 1.7E-06 45.6 2.9 24 19-42 20-43 (189)
448 3c5c_A RAS-like protein 12; GD 93.0 0.056 1.9E-06 45.6 3.2 23 22-44 22-44 (187)
449 1vg8_A RAS-related protein RAB 93.0 0.056 1.9E-06 45.9 3.2 26 20-45 7-32 (207)
450 1knx_A Probable HPR(Ser) kinas 93.0 0.044 1.5E-06 51.5 2.7 29 21-50 147-175 (312)
451 1x3s_A RAS-related protein RAB 93.0 0.058 2E-06 45.1 3.2 24 21-44 15-38 (195)
452 1svi_A GTP-binding protein YSX 93.0 0.062 2.1E-06 45.1 3.4 24 21-44 23-46 (195)
453 3bwd_D RAC-like GTP-binding pr 92.9 0.073 2.5E-06 44.0 3.8 24 21-44 8-31 (182)
454 3pqc_A Probable GTP-binding pr 92.9 0.05 1.7E-06 45.5 2.7 23 22-44 24-46 (195)
455 3ihw_A Centg3; RAS, centaurin, 92.9 0.058 2E-06 45.5 3.2 23 22-44 21-43 (184)
456 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.053 1.8E-06 53.6 3.3 26 20-45 137-162 (460)
457 3t5g_A GTP-binding protein RHE 92.9 0.056 1.9E-06 44.8 3.0 23 22-44 7-29 (181)
458 1z06_A RAS-related protein RAB 92.9 0.06 2.1E-06 45.2 3.2 24 21-44 20-43 (189)
459 2fg5_A RAB-22B, RAS-related pr 92.9 0.055 1.9E-06 45.7 3.0 25 20-44 22-46 (192)
460 3tui_C Methionine import ATP-b 92.9 0.057 1.9E-06 51.8 3.3 27 19-45 52-78 (366)
461 1zd9_A ADP-ribosylation factor 92.9 0.061 2.1E-06 45.3 3.2 24 21-44 22-45 (188)
462 2a5j_A RAS-related protein RAB 92.9 0.062 2.1E-06 45.3 3.3 24 21-44 21-44 (191)
463 3reg_A RHO-like small GTPase; 92.8 0.063 2.1E-06 45.3 3.2 25 20-44 22-46 (194)
464 1ksh_A ARF-like protein 2; sma 92.8 0.069 2.4E-06 44.5 3.4 26 19-44 16-41 (186)
465 1zbd_A Rabphilin-3A; G protein 92.7 0.061 2.1E-06 45.6 3.1 24 21-44 8-31 (203)
466 3cph_A RAS-related protein SEC 92.7 0.075 2.6E-06 45.3 3.6 26 19-44 18-43 (213)
467 2www_A Methylmalonic aciduria 92.7 0.077 2.6E-06 50.3 4.0 25 21-45 74-98 (349)
468 2bcg_Y Protein YP2, GTP-bindin 92.7 0.062 2.1E-06 45.8 3.0 24 21-44 8-31 (206)
469 3oes_A GTPase rhebl1; small GT 92.6 0.062 2.1E-06 45.7 3.0 24 21-44 24-47 (201)
470 1xx6_A Thymidine kinase; NESG, 92.6 0.11 3.9E-06 45.0 4.7 33 21-53 8-43 (191)
471 4ag6_A VIRB4 ATPase, type IV s 92.6 0.11 3.8E-06 49.5 5.0 34 20-53 34-70 (392)
472 3hjn_A DTMP kinase, thymidylat 92.6 0.075 2.6E-06 46.2 3.4 30 24-53 3-35 (197)
473 3qks_A DNA double-strand break 92.6 0.083 2.8E-06 46.0 3.7 27 21-47 23-49 (203)
474 2p5s_A RAS and EF-hand domain 92.5 0.082 2.8E-06 44.9 3.6 26 19-44 26-51 (199)
475 1gwn_A RHO-related GTP-binding 92.5 0.067 2.3E-06 46.2 3.0 24 21-44 28-51 (205)
476 2fh5_B SR-beta, signal recogni 92.4 0.075 2.6E-06 45.5 3.2 25 21-45 7-31 (214)
477 2gf0_A GTP-binding protein DI- 92.4 0.09 3.1E-06 44.2 3.7 25 20-44 7-31 (199)
478 1nij_A Hypothetical protein YJ 92.4 0.14 4.8E-06 47.7 5.3 24 22-45 5-28 (318)
479 2aka_B Dynamin-1; fusion prote 92.3 0.15 5.3E-06 46.1 5.4 44 1-44 1-49 (299)
480 4gzl_A RAS-related C3 botulinu 92.3 0.083 2.8E-06 45.3 3.4 26 19-44 28-53 (204)
481 2ew1_A RAS-related protein RAB 92.3 0.073 2.5E-06 45.8 3.0 24 21-44 26-49 (201)
482 2fu5_C RAS-related protein RAB 92.3 0.044 1.5E-06 45.6 1.5 25 20-44 7-31 (183)
483 2qag_B Septin-6, protein NEDD5 92.3 0.068 2.3E-06 52.3 3.1 21 24-44 45-65 (427)
484 1fzq_A ADP-ribosylation factor 92.3 0.083 2.8E-06 44.3 3.3 25 20-44 15-39 (181)
485 3lxx_A GTPase IMAP family memb 92.2 0.074 2.5E-06 46.9 3.0 24 21-44 29-52 (239)
486 3b6e_A Interferon-induced heli 92.2 0.1 3.4E-06 44.6 3.8 24 22-45 49-72 (216)
487 3i8s_A Ferrous iron transport 92.2 0.35 1.2E-05 43.8 7.7 24 21-44 3-26 (274)
488 2atx_A Small GTP binding prote 92.2 0.078 2.7E-06 44.6 3.0 23 22-44 19-41 (194)
489 2b6h_A ADP-ribosylation factor 92.2 0.088 3E-06 44.6 3.3 25 19-43 27-51 (192)
490 2yv5_A YJEQ protein; hydrolase 92.2 0.081 2.8E-06 49.1 3.3 25 21-46 165-189 (302)
491 2q3h_A RAS homolog gene family 92.1 0.084 2.9E-06 44.7 3.1 24 20-43 19-42 (201)
492 2rcn_A Probable GTPase ENGC; Y 92.1 0.076 2.6E-06 50.8 3.0 25 22-46 216-240 (358)
493 2fv8_A H6, RHO-related GTP-bin 92.0 0.081 2.8E-06 45.3 3.0 24 21-44 25-48 (207)
494 2cjw_A GTP-binding protein GEM 92.0 0.096 3.3E-06 44.5 3.4 23 22-44 7-29 (192)
495 1f6b_A SAR1; gtpases, N-termin 92.0 0.082 2.8E-06 45.1 2.9 23 21-43 25-47 (198)
496 2il1_A RAB12; G-protein, GDP, 92.0 0.082 2.8E-06 44.7 2.9 22 22-43 27-48 (192)
497 2o52_A RAS-related protein RAB 91.9 0.081 2.8E-06 45.1 2.8 25 19-43 23-47 (200)
498 2f7s_A C25KG, RAS-related prot 91.9 0.087 3E-06 45.2 3.1 24 21-44 25-48 (217)
499 2h17_A ADP-ribosylation factor 91.9 0.072 2.5E-06 44.4 2.4 24 21-44 21-44 (181)
500 2gco_A H9, RHO-related GTP-bin 91.9 0.087 3E-06 44.9 3.0 23 22-44 26-48 (201)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=7.1e-53 Score=397.99 Aligned_cols=277 Identities=88% Similarity=1.401 Sum_probs=238.9
Q ss_pred CchhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694 1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 80 (337)
Q Consensus 1 ~~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~ 80 (337)
+|+++.+++|+|+..++.++|+|+|||||||||||++|+++|++++.+++.++++++.++++|+++..+++.|..|.+++
T Consensus 16 ~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 16 MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEII 95 (293)
T ss_dssp HHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694 81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 160 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~ 160 (337)
+...|+||||||||++++++++..+.+..++.+...|++++|+.+.+++++.+......+|+||+|||+++.||++|+|+
T Consensus 96 ~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~ 175 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 175 (293)
T ss_dssp TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHH
T ss_pred hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCC
Confidence 89999999999999999877655566677888999999999999888888887777788999999999999999999999
Q ss_pred CCceEEEeCCCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCc
Q 019694 161 GRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240 (337)
Q Consensus 161 gR~d~~i~~P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~ 240 (337)
||||+.+++|+.++|.+|++.++...+++.+.+++++++|++++|++++++|++.+++++++|++..|.+++.+.++++.
T Consensus 176 ~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~~~~~~~ 255 (293)
T 3t15_A 176 GRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSF 255 (293)
T ss_dssp HHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHHHHTSCS
T ss_pred CCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHH
Q 019694 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLAD 277 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~ 277 (337)
...|.|.++.+++++|+++|+++++||+++..++|++
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~ 292 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD 292 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8899999999999999999999999999999999986
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-41 Score=329.64 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=153.7
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.|+.+|..| +..+||||||||||
T Consensus 176 ~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A----r~~aP~IIFiDEiD 251 (405)
T 4b4t_J 176 SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID 251 (405)
T ss_dssp HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH----HHTCSEEEEEESSS
T ss_pred hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH----HHhCCceEeeecch
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCc-c-cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTT-Q-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~-~-~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+++++++.+. . .....+.+. .|++.+| |. ....+|+||+|||+++.|||||+||||||+.|++ |
T Consensus 252 ai~~~R~~~~~~~~~~~~~~l~-~lL~~lD--------g~---~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLD--------GF---ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp CCTTSCSCSSSGGGGHHHHHHH-HHHHHHH--------TT---TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hhccCCCCCCCCCcHHHHHHHH-HHHHhhh--------cc---CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 9998775222 1 122223333 3444445 55 5567899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.+++.. +++.+.+++.|+||+|+||..
T Consensus 320 d~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999998765 456789999999999999963
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-40 Score=324.54 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=153.1
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..| +..+||||||||||
T Consensus 210 ~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~A----r~~aP~IIfiDEiD 285 (437)
T 4b4t_I 210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA----GENAPSIVFIDEID 285 (437)
T ss_dssp HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHH----HHTCSEEEEEEEES
T ss_pred hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHH----HhcCCcEEEEehhh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcc--cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~~--~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+++++|+.+.. .....+.+. .|++.+| |. ....+|+||+|||+++.||+||+||||||+.|++ |
T Consensus 286 ai~~~R~~~~~~~~~~~~~~l~-~LL~~lD--------g~---~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 286 AIGTKRYDSNSGGEREIQRTML-ELLNQLD--------GF---DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp SSSCCCSCSSCSSCCHHHHHHH-HHHHHHH--------HC---CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred hhcccCCCCCCCccHHHHHHHH-HHHHHhh--------Cc---CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 99987753221 112222332 3444444 44 5567899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.+++.. +++.+.|++.++||+|+||..
T Consensus 354 d~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 9999999999999765 456789999999999999973
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-40 Score=323.48 Aligned_cols=177 Identities=20% Similarity=0.291 Sum_probs=152.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..| +..+||||||||+|
T Consensus 237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A----r~~aP~IIfiDEiD 312 (467)
T 4b4t_H 237 TLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEID 312 (467)
T ss_dssp HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH----HHTCSEEEEEECCT
T ss_pred HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH----HhcCCceEeecccc
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcc-c-chhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTTQ-Y-TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~~-~-~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+++.+|+.... . ....+.+. .|++.+| |. ....+|+||+|||+++.||+||+||||||+.|++ |
T Consensus 313 ai~~~R~~~~~~~~~~~~~~l~-~lL~~lD--------g~---~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 313 AVGGARFDDGAGGDNEVQRTML-ELITQLD--------GF---DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TTSBCCSSSSCGGGGHHHHHHH-HHHHHHH--------SS---CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cccccccCcCCCccHHHHHHHH-HHHHHhh--------cc---CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 99987753221 1 11122222 3333344 44 5668899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.+++.. +++.+.|++.|+||+|+||..
T Consensus 381 d~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999998764 456789999999999999963
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=321.90 Aligned_cols=177 Identities=26% Similarity=0.356 Sum_probs=153.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..| +..+||||||||||
T Consensus 209 ~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A----~~~~P~IifiDEiD 284 (437)
T 4b4t_L 209 RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEPCIIFMDEVD 284 (437)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHH----HHSCSEEEEEECCC
T ss_pred hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHH----HhcCCceeeeeccc
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+++++|++.. ......+.+. .|++.+| |. ....+|+||+|||+++.|||||+||||||+.|++ |
T Consensus 285 ai~~~R~~~~~~~~~~~~~~l~-~lL~~lD--------g~---~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 285 AIGGRRFSEGTSADREIQRTLM-ELLTQMD--------GF---DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SSSCCCSSSCCSSTTHHHHHHH-HHHHHHH--------SS---SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred ccccccccCCCCcchHHHHHHH-HHHHHhh--------cc---cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 9998775221 1222223333 3444445 55 5567899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.+++.. .++.+.+++.|+||+|+||..
T Consensus 353 d~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN 393 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHH
Confidence 9999999999998754 566799999999999999963
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-40 Score=326.36 Aligned_cols=178 Identities=22% Similarity=0.308 Sum_probs=152.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..| +..+||||||||||
T Consensus 209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A----~~~aP~IifiDEiD 284 (434)
T 4b4t_M 209 DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA----KEKAPTIIFIDELD 284 (434)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH----HHHCSEEEEEECTH
T ss_pred hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH----HhcCCeEEeecchh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcc-cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 95 AGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 95 ~l~~~~~~~~~-~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
+++++|+++.. .......+...|++.+| |+ ....+|+||+|||+++.||+||+||||||+.|++ |+
T Consensus 285 al~~~R~~~~~~~~~~~~~~~~~lL~~ld--------g~---~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 285 AIGTKRFDSEKSGDREVQRTMLELLNQLD--------GF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp HHHCCCSSGGGGTTHHHHHHHHHHHHHHT--------TS---CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHHhh--------cc---CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC
Confidence 99987753221 11111222233444445 65 5567899999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 172 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
.++|.+|++.++++. +++.+.|++.|+||+|+||..
T Consensus 354 ~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp HHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 999999999888643 567799999999999999963
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=313.69 Aligned_cols=177 Identities=20% Similarity=0.280 Sum_probs=153.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.|+.+|..| +..+||||||||+|
T Consensus 200 ~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A----~~~aP~IifiDEiD 275 (428)
T 4b4t_K 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA----RENAPSIIFIDEVD 275 (428)
T ss_dssp HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH----HHTCSEEEEEECTH
T ss_pred hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHH----HHcCCCeeechhhh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC---
Q 019694 95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--- 169 (337)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--- 169 (337)
++++.|++. .......+.+. .|++.+| |. ....+|+||+|||+++.|||||+||||||+.|++
T Consensus 276 ~i~~~R~~~~~~~~~~~~r~l~-~lL~~ld--------g~---~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 276 SIATKRFDAQTGSDREVQRILI-ELLTQMD--------GF---DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp HHHCSCSSSCSCCCCHHHHHHH-HHHHHHH--------HS---CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred hhhccccCCCCCCChHHHHHHH-HHHHHhh--------CC---CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 999777422 12223334444 4445555 55 4567899999999999999999999999999987
Q ss_pred CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 170 PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
|+.++|.+|++.+++.. +++.+.+++.|+||+|+||..
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence 79999999999998765 456789999999999999963
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-36 Score=320.40 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=137.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||++|+++|++++.+|+.++++++.++|+|++++.|+++|..| +..+||||||||||
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiD 580 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELD 580 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGG
T ss_pred hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhh
Confidence 45889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
++++.|+.. .......+.++++| ..+| |. ....+|+||+|||+|+.||+|++||||||+.+++ |
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL-~~md--------g~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQIL-TEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp GCC--------------CHHHHHHH-HHHH--------SS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred HHhhccCCCCCCCchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 999887532 22334445555444 4555 55 4567899999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 225 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~ 225 (337)
+.++|.+|++.++++. +++.+.|++.++||+|+||.. ++......++++.++
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~---l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE---ICQRACKLAIRESIE 704 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHH---HHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 9999999999999865 445688999999999999974 333333334555443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-34 Score=303.30 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=162.0
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|+++|+|||||||||||||+||+++|++++.+++.++++++.++|.|++++.++.+|..| ++.+||||||||||
T Consensus 232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A----~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELD 307 (806)
T ss_dssp SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHH----TTSCSEEEEEESGG
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHH----HHcCCeEEEEehhc
Confidence 56899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
+++.++++ .......+.++ .|+.++| +. ....+|+||+|||+++.||++|+|+||||+.+++ |+.
T Consensus 308 al~~~r~~-~~~~~~~riv~-~LL~~md--------g~---~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 308 AIAPKREK-THGEVERRIVS-QLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp GTCCTTTT-CCCTTHHHHHH-HHHTHHH--------HC---CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred ccccccCC-CCChHHHHHHH-HHHHHHh--------cc---cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence 99987762 33344444554 4445555 44 4457899999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHh
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 226 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~ 226 (337)
++|.+|++.+++.. +++...++..|+||+|+||.. +.......++++....
T Consensus 375 ~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~---Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA---LCSEAALQAIRKKMDL 429 (806)
T ss_dssp HHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH---HHHHHHHHHHHhcccc
Confidence 99999999998764 567799999999999999973 3333333345544443
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=3.5e-30 Score=257.91 Aligned_cols=177 Identities=21% Similarity=0.272 Sum_probs=145.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.++|+|+||+||||||||++|+++|.+++.+|+.++++++.+.++|..+..++.+|..| +...|+||||||||
T Consensus 43 ~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A----~~~~p~ILfIDEid 118 (476)
T 2ce7_A 43 RIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA----KAHAPCIVFIDEID 118 (476)
T ss_dssp TTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHH----HHTCSEEEEEETGG
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHH----HhcCCCEEEEechh
Confidence 45889999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
.+..+++.. .......+.++++| ..++ ++ ....+|+||+|||+++.||++++|+||||+.+.+ |
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL-~~ld--------~~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLL-VEMD--------GF---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp GTCCC---------CHHHHHHHHHH-HHHH--------HS---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred hhhhhcccccCcCcHHHHHHHHHHH-HHHh--------cc---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 998766421 11112223344333 3333 33 2346799999999999999999999999999998 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.+++.. +++...+++.+.||+|++|..
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~ 227 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLEN 227 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHH
Confidence 9999999999888764 345678999999999999974
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.1e-29 Score=236.44 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=152.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
+..+|++||||||||||||++|+++|+++ +.+++.++++++.++|.|+.++.++.+|..| +..+|+||||||||+
T Consensus 41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a----~~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 41 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDS 116 (322)
T ss_dssp TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHH----HHTSSEEEEEETTTG
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHH----HhcCCcEEEeecHHH
Confidence 46788999999999999999999999999 8999999999999999999999999999999 888999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+++.++. .......+.++++| ..++ +. .....+|+||+|||+++.+|++++| ||++.+++ |+.+
T Consensus 117 l~~~~~~-~~~~~~~~~~~~ll-~~ld--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 117 LCGSRSE-NESEAARRIKTEFL-VQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182 (322)
T ss_dssp GGCCSSS-CCTTHHHHHHHHHH-HHHH--------CS--SSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHH
T ss_pred hcccccc-ccchHHHHHHHHHH-HHHh--------cc--cccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHH
Confidence 9877652 23334444444443 4444 22 1235789999999999999999999 99999998 9999
Q ss_pred HHHHHHHHhccCCCC--CH---HHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH
Q 019694 174 DRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 225 (337)
Q Consensus 174 ~R~~Il~~~~~~~~l--~~---~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~ 225 (337)
+|.+|++.++...+. +. ..|++.++||+|+||.. +.......++++.+.
T Consensus 183 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI---IVRDALMQPVRKVQS 236 (322)
T ss_dssp HHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH---HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHh
Confidence 999999999876643 33 67888899999999973 333334445665554
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=234.80 Aligned_cols=176 Identities=25% Similarity=0.400 Sum_probs=142.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..++.+|+|++|+||||||||+|++++|.+++.+++.+++.++.+.+.|+.++.++.+|..+ +...|+++|+||+|
T Consensus 38 ~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a----~~~~p~i~~~Deid 113 (274)
T 2x8a_A 38 ALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAPCVIFFDEVD 113 (274)
T ss_dssp HTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHH----HHTCSEEEEEETCT
T ss_pred HcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHH----HhcCCCeEeeehhh
Confidence 45889999999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
.++..++.. ......+.+++ ++..++ |. .....++++++||+++.||+|++||||||+.+++ |+.
T Consensus 114 ~~~~~r~~~-~~~~~~~~~~~-~l~~Ls--------gg---~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~ 180 (274)
T 2x8a_A 114 ALCPRRSDR-ETGASVRVVNQ-LLTEMD--------GL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180 (274)
T ss_dssp TTCC----------CTTHHHH-HHHHHH--------TC---CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH
T ss_pred hhhcccCCC-cchHHHHHHHH-HHHhhh--------cc---cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH
Confidence 987655421 11112233333 333334 33 4456789999999999999999999999999999 999
Q ss_pred HHHHHHHHHhccC-------CCCCHHHHHHH--hcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRN-------DNVADDDIVKL--VDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~-------~~l~~~~la~l--~~gf~gadl~~ 207 (337)
++|.+|++.+++. ..++.+.++.. ++||+|+||..
T Consensus 181 ~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp HHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 9999999998853 24566788876 45999999974
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.8e-29 Score=238.36 Aligned_cols=176 Identities=22% Similarity=0.366 Sum_probs=147.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.|+++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..| ....|+||||||||.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 119 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHH----HHTCSEEEEECSTTH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHH----HhcCCeEEEEEChHH
Confidence 3788999999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 96 GAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 96 l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
+...+++. .......+.+. .|+..++ +. ....+|+||+|||+++.||++++|+|||++.+++ |+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~-~lL~~l~--------~~---~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~ 187 (301)
T 3cf0_A 120 IAKARGGNIGDGGGAADRVIN-QILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187 (301)
T ss_dssp HHHHHTTTTCCSSCSCCHHHH-HHHHHHH--------SS---CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred HhhccCCCcCCcchHHHHHHH-HHHHHhh--------cc---cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcC
Confidence 88654321 11112223333 3445555 33 3356799999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 172 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
.++|.+|++.+++.. +++.+.++..+.||+|++|..
T Consensus 188 ~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 188 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp HHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence 999999999998754 456689999999999998863
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1.1e-28 Score=234.79 Aligned_cols=191 Identities=20% Similarity=0.272 Sum_probs=152.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.+..+|++||||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..| +...|+||||||||.
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~ 121 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKPSIIFIDQVDA 121 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHH----HHTSSEEEEEECGGG
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHH----HhcCCeEEEechhhh
Confidence 3667889999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+...++. .+.....+... .|+..++ +. .....+|+||+|||+++.||++++| ||+..+++ |+.+
T Consensus 122 l~~~~~~-~~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 122 LTGTRGE-GESEASRRIKT-ELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 187 (322)
T ss_dssp GSCC-------CCTHHHHH-HHHHHHG--------GG--GTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHH
T ss_pred hhccCCC-CcchHHHHHHH-HHHHHhc--------cc--cccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHH
Confidence 9876642 22233333443 3444444 22 1245679999999999999999999 99999988 9999
Q ss_pred HHHHHHHHhccCCCC--CH---HHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhh
Q 019694 174 DRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV 227 (337)
Q Consensus 174 ~R~~Il~~~~~~~~l--~~---~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~ 227 (337)
+|.+|++.++...+. +. ..+++.++||+|++|. ++.......++++....+
T Consensus 188 ~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 188 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHHHHTTHHHHHHHHCE
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhh
Confidence 999999999887653 33 6788889999999996 334444445566666554
No 15
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=2.3e-28 Score=246.11 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=167.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.++|+|+||+||||||||+||+++|.+++.+++.++++++.+.+.|...+.++.+|+.+ +...|+|+||||||
T Consensus 58 ~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a----~~~~p~il~IDEId 133 (499)
T 2dhr_A 58 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID 133 (499)
T ss_dssp TTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTS----SSSSSCEEEEECGG
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHH----HhcCCCEEEEehHH
Confidence 45788999999999999999999999999999999999999999999999888899999988 77789999999999
Q ss_pred cccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
.+...++... ......+.++++| ..++ |. .....+++|++||+++.||++++|+||||+.+.+ |
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~LL-~~Ld--------g~---~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHHHH-HHGG--------GC---CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred HHHHhhccCcCCCcHHHHHHHHHHH-HHhc--------cc---ccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 9886654111 1111223344333 3333 44 3456789999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH----hhcCccchhhh---hcC
Q 019694 171 TREDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS----GVGVGSIGKSL---VNS 239 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~----~~~~~~~~~~~---~~~ 239 (337)
+.++|.+|++.+++...+ +...++..+.||+|++|...- + ++.....+ .+..+.+...+ +..
T Consensus 202 d~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv--~-----~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL--N-----EAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHH--H-----HHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHH--H-----HHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 999999999998875443 457899999999999997431 1 11111110 12222222211 111
Q ss_pred cCC-CCCCCCCcccHHHHHHHHHHHHHHH
Q 019694 240 KEA-APTFEQPRMTMEKLLEYGNMIVQEQ 267 (337)
Q Consensus 240 ~~~-~~~~~~~~~~~~~l~~~g~~l~~eq 267 (337)
... ...+.+.+....++|++||+++..-
T Consensus 275 ~~~~~~~~~~~e~~~~a~~e~g~av~~~~ 303 (499)
T 2dhr_A 275 PAKKSLVLSPRDRRITAYHEAGHALAAHF 303 (499)
T ss_dssp SSSSCCCCCTTHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhHHHHhhhHHHHHHHHHHHhh
Confidence 111 1223344556789999999987653
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=2e-27 Score=229.70 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=144.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.+.+++++||||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..| +...|+||||||||.
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKPSIIFIDQVDA 154 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHH----HHTSSEEEEEECGGG
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHh
Confidence 3567889999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+...++. .+.....+..+ .|+..++ +. .....+|+||+|||+++.||++++| ||+..+++ |+.+
T Consensus 155 l~~~r~~-~~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 220 (355)
T 2qp9_X 155 LTGTRGE-GESEASRRIKT-ELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 220 (355)
T ss_dssp GTC-------CTHHHHHHH-HHHHHHH--------HC--C---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred hcccCCC-CcchHHHHHHH-HHHHHhh--------cc--cccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHH
Confidence 9877652 23333334444 3444544 22 1234679999999999999999999 99999988 9999
Q ss_pred HHHHHHHHhccCCCC--CH---HHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHH
Q 019694 174 DRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 224 (337)
Q Consensus 174 ~R~~Il~~~~~~~~l--~~---~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i 224 (337)
+|.+|++.++...+. +. ..|++.++||+|++|.. +.......++++..
T Consensus 221 ~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~---l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 221 ARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV---VVKDALMQPIRKIQ 273 (355)
T ss_dssp HHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHH
Confidence 999999999877643 33 67899999999999973 33333334455443
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.6e-27 Score=221.47 Aligned_cols=178 Identities=24% Similarity=0.344 Sum_probs=145.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.|+.++.++||+||||||||++|+++|++++.+++.++++++.+.+.|+....++..|..+ +...|+||||||+|.
T Consensus 46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 46 VGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLA----KEKAPSIIFIDEIDA 121 (285)
T ss_dssp HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHH----HHTCSEEEEEETTHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHH----HHcCCeEEEEECHHH
Confidence 4678899999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+..++.+.. ..........+..+++ .+++. ....+++||+|||.++.+|++++|++||+..+.+ |+.+
T Consensus 122 l~~~~~~~~--~~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 191 (285)
T 3h4m_A 122 IAAKRTDAL--TGGDREVQRTLMQLLA-----EMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191 (285)
T ss_dssp HHBCCSSSC--CGGGGHHHHHHHHHHH-----HHHTT---CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHH
T ss_pred hcccCcccc--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHH
Confidence 987664221 1111122233333333 11122 3346799999999999999999999999999998 9999
Q ss_pred HHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 174 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 174 ~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+|.+|++.++... ..+...++..+.||++++|..
T Consensus 192 ~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 192 GRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp HHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 9999999988754 345689999999999999863
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=3.1e-27 Score=234.91 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=143.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
+..+|++||||||||||||++|+++|+++ +.+|+.++++++.++|.|+.++.++.+|..| +...|+||||||||.
T Consensus 163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~ 238 (444)
T 2zan_A 163 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDS 238 (444)
T ss_dssp GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHH----HHSCSEEEEESCTTT
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHh
Confidence 35678999999999999999999999999 8999999999999999999999999999998 888999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+++.++. .......+.++++| ..++ +. .....+|+||+|||+++.||++++| ||+..+++ |+.+
T Consensus 239 l~~~~~~-~~~~~~~~~~~~lL-~~l~--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 304 (444)
T 2zan_A 239 LCGSRSE-NESEAARRIKTEFL-VQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH 304 (444)
T ss_dssp TCCCSSC-CCCGGGHHHHHHHH-TTTT--------CS--SCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHH
T ss_pred hccCCCC-ccccHHHHHHHHHH-HHHh--------Cc--ccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHH
Confidence 9876652 23333444444433 3444 33 1235789999999999999999999 99998888 9999
Q ss_pred HHHHHHHHhccCCCC--C---HHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHh
Q 019694 174 DRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 226 (337)
Q Consensus 174 ~R~~Il~~~~~~~~l--~---~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~ 226 (337)
+|.+|++.++...+. + ...|++.++||+|++|.. +.......++++.+..
T Consensus 305 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI---IVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH---HHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHhh
Confidence 999999999876543 3 367899999999999974 3333334456665543
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=218.30 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=133.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.|.+.|+++|||||||||||++|+++|++++.+++.++++++.+.+.|.....++.+|..+ ....|+||||||+|.
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA----RARAPCIVYIDEIDA 109 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHH----HHTCSEEEEEECC--
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHH----HhcCCeEEEEeCcch
Confidence 4678999999999999999999999999999999999999999999999988999999998 778899999999999
Q ss_pred ccccCCCCcc---cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 96 GAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 96 l~~~~~~~~~---~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+..+++.... .......+..+| +.++ +. ....+++||+|||.++.+|++++|+|||+..+++ |
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp -----------------CHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred hhccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 9866541110 111122233222 3333 22 2346899999999999999999999999999998 9
Q ss_pred CHHHHHHHHHHhccCCCCCH------HHHHHHhcCCCchhhH
Q 019694 171 TREDRIGVCKGIFRNDNVAD------DDIVKLVDTFPGQSID 206 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~l~~------~~la~l~~gf~gadl~ 206 (337)
+.++|.+|++.++...++.. ..+++.+.||++++|.
T Consensus 178 ~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH
Confidence 99999999999887655442 5688888999998876
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1e-26 Score=213.56 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=142.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..|.++|+++||+||||||||++|+++|++++.+++.++++++.+.+.|...+.++.+|..| ....|+++||||+|
T Consensus 39 ~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~il~iDeid 114 (257)
T 1lv7_A 39 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID 114 (257)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHH----HTTCSEEEEETTHH
T ss_pred HcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHH----HHcCCeeehhhhhh
Confidence 34678899999999999999999999999999999999999999999999999999999998 78889999999999
Q ss_pred cccccCCCCcc--cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~~~--~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
.+...++.... .....+.+.. ++..++ +. ....+++||+|||+++.+|++++|+|||++.+.+ |
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~-ll~~l~--------~~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P 182 (257)
T 1lv7_A 115 AVGRQRGAGLGGGHDEREQTLNQ-MLVEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 182 (257)
T ss_dssp HHTCCCSTTSCCTTCHHHHHHHH-HHHHHH--------TC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCC
T ss_pred hhccCCCCCcCCCchHHHHHHHH-HHHHhh--------Cc---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCC
Confidence 98865542111 1111233333 333344 33 3356799999999999999999999999999988 9
Q ss_pred CHHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.++...++ +...++..+.||++++|..
T Consensus 183 ~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence 999999999998876543 3477888899999999873
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=4.1e-27 Score=236.77 Aligned_cols=175 Identities=22% Similarity=0.311 Sum_probs=149.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.|.++|++||||||||||||++|+++|++++.+|+.++++++.+.+.|+....++.+|..| ...+|++|||||||.
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA 308 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence 3688999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+..+++. ..... ...+...|+.+++ +. ....+++||+|||+++.||++++|+|||+..+++ |+.+
T Consensus 309 l~~~~~~-~~~~~-~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 309 IAPKREK-THGEV-ERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp HCBCTTS-CCCHH-HHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred hcccccc-ccchH-HHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 9977652 22222 3344455666666 22 3456799999999999999999999999999998 9999
Q ss_pred HHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694 174 DRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 174 ~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~ 207 (337)
+|.+|++.++.... ++...++..+.||++++|..
T Consensus 376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHH
Confidence 99999999987654 34588999999999999863
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=9e-28 Score=254.57 Aligned_cols=176 Identities=21% Similarity=0.351 Sum_probs=145.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.++.+++++||+||||||||++|+++|++++.+++.++++++.++|+|+.++.++.+|+.| +...||||||||||+
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 581 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH----HHHCSBCCCCSSHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH----HhcCCeEEEEEChhh
Confidence 3677889999999999999999999999999999999999999999999999999999999 888899999999999
Q ss_pred ccccCCCCcc--cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 96 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 96 l~~~~~~~~~--~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
++..+++... .....+.+ ..|++.++ +. ....+|+||+|||+++.||+|++|||||++.+++ |+
T Consensus 582 l~~~r~~~~~~~~~~~~~v~-~~LL~~ld--------~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVI-NQILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHH-HHHHTTCC-----------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCC
T ss_pred hhhhccCCCCCcchhHHHHH-HHHHHHHh--------cc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCC
Confidence 9877753211 11223333 34444444 44 4457899999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694 172 REDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~ 207 (337)
.++|.+|++.+++... ++...+++.++||+|++|..
T Consensus 650 ~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~ 689 (806)
T 1ypw_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp CSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHH
Confidence 9999999999997653 44578889999999999974
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=5e-25 Score=205.97 Aligned_cols=173 Identities=17% Similarity=0.304 Sum_probs=135.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
.+++++||+||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+ ....|+||||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHH----HHcCCcEEEeccHHHhcc
Confidence 4689999999999999999999999999999999999999999999999999999988 788999999999999987
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 176 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~ 176 (337)
.++. .......+... .|+..++ +........+++||+|||+++.++++++| ||+..+++ |+.++|.
T Consensus 128 ~~~~-~~~~~~~~~~~-~ll~~l~--------~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSS-SEHEASRRLKT-EFLVEFD--------GLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHHHHH-HHHHHHH--------HCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred cccc-CcchHHHHHHH-HHHHHHh--------cccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 6542 11222233333 3334444 22111223679999999999999999998 89888887 9999999
Q ss_pred HHHHHhccCCC--CCH---HHHHHHhcCCCchhhHh
Q 019694 177 GVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 177 ~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~ 207 (337)
.|++.++...+ ++. ..+++.+.||+|++|..
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99998886543 443 56788899999999863
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.9e-25 Score=212.92 Aligned_cols=173 Identities=18% Similarity=0.318 Sum_probs=138.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
..+|++|||+||||||||++|+++|++++.+++.++++++.+.+.|+..+.++.+|..+ ....|+||||||||.+.
T Consensus 114 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~ 189 (357)
T 3d8b_A 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA----RCQQPAVIFIDEIDSLL 189 (357)
T ss_dssp GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH----HHTCSEEEEEETHHHHT
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEeCchhhh
Confidence 36789999999999999999999999999999999999999999999999999999988 88899999999999998
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHH
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 175 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R 175 (337)
..++. .......+.+. .|+..++ +. ......+++||+|||+++.++++++| ||+..+++ |+.++|
T Consensus 190 ~~~~~-~~~~~~~~~~~-~lL~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 190 SQRGD-GEHESSRRIKT-EFLVQLD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp BC-------CHHHHHHH-HHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred ccCCC-CcchHHHHHHH-HHHHHHh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 76542 22222333333 3444444 22 11234689999999999999999998 89988888 999999
Q ss_pred HHHHHHhccCCC--CCH---HHHHHHhcCCCchhhHh
Q 019694 176 IGVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 176 ~~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~ 207 (337)
.+|++.++...+ ++. ..+++.++||++++|..
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 999998886654 444 56788899999999863
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=2.6e-25 Score=203.79 Aligned_cols=177 Identities=20% Similarity=0.273 Sum_probs=139.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..++++|+|++|+||||||||+|+++++..++.+++.+++.++.+.+.|...+.++.+|+.+ ....|+++||||||
T Consensus 43 ~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~Deid 118 (254)
T 1ixz_A 43 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID 118 (254)
T ss_dssp HTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHH----TTSSSEEEEEETHH
T ss_pred HcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHH----HhcCCeEEEehhhh
Confidence 45788999999999999999999999999999999999999888888888888888899888 76789999999999
Q ss_pred cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
.+...++.. .......+.++++ +..++ |. .....++++++||+++.||++++|++||++.+++ |
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~l-l~~l~--------g~---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 186 (254)
T 1ixz_A 119 AVGRKRGSGVGGGNDEREQTLNQL-LVEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186 (254)
T ss_dssp HHHC---------CHHHHHHHHHH-HHHHH--------TC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSC
T ss_pred hhhcccCccccccchHHHHHHHHH-HHHHh--------CC---CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCc
Confidence 987554311 0111222333333 33333 33 3345678999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.+.+.. .++...++..++||+|++|..
T Consensus 187 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 9999999999887654 344578999999999999863
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=6.2e-27 Score=215.85 Aligned_cols=176 Identities=22% Similarity=0.289 Sum_probs=136.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.+.++|+++||+||||||||++|+++|++++.+++.++++++.+.+.|.....++..|..+ ....|+||||||+|.
T Consensus 39 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDEid~ 114 (268)
T 2r62_A 39 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETA----KKQAPSIIFIDEIDA 114 (268)
T ss_dssp HSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHH----HHSCSCEEEESCGGG
T ss_pred CCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHH----HhcCCeEEEEeChhh
Confidence 3678899999999999999999999999999999999999999999988877778889888 777899999999999
Q ss_pred ccccCCCCc---ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 96 GAGRMGGTT---QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 96 l~~~~~~~~---~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
+...+.++. ......+.+. .|+..++ +. .....+++||+|||.++.+|++++|+|||+..+++ |
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p 183 (268)
T 2r62_A 115 IGKSRAAGGVVSGNDEREQTLN-QLLAEMD--------GF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183 (268)
T ss_dssp TTC----------CCCSCSSTT-TTTTTTT--------CS--SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCC
T ss_pred hcccccccccCCCchhHHHHHH-HHHHHhh--------Cc--ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCc
Confidence 986542110 0000111121 1112222 22 12345689999999999999999999999998888 9
Q ss_pred CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhH
Q 019694 171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~ 206 (337)
+.++|.+|++.++.... ++.+.++..+.||+|++|.
T Consensus 184 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 184 DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp CTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 99999999999887643 3457788889999998875
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=212.52 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=128.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
.++++||||||||||||++|+++|++++.+++.++++++.+.+.|+....++.+|..+ +...|+||||||||.++.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVA----RELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHH----HHSSSEEEEEETGGGGC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEECchhhcc
Confidence 4579999999999999999999999999999999999999999999999999999999 888999999999999986
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 176 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~ 176 (337)
.+.. .......+... .|+..++ +. ......+|+||+|||+++.|+++++| ||+..+++ |+.++|.
T Consensus 222 ~~~~-~~~~~~~~~~~-~ll~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 222 ERRE-GEHDASRRLKT-EFLIEFD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288 (389)
T ss_dssp --------CTHHHHHH-HHHHHHH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCC-ccchHHHHHHH-HHHHHhh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence 6542 22222333333 3444444 22 11234679999999999999999998 89887887 9999999
Q ss_pred HHHHHhccCCC--CCH---HHHHHHhcCCCchhhHh
Q 019694 177 GVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 177 ~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~ 207 (337)
+|++.++...+ ++. ..++..++||++++|..
T Consensus 289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99999887654 333 57788899999998864
No 28
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.92 E-value=2.3e-25 Score=175.21 Aligned_cols=103 Identities=84% Similarity=1.316 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCC
Q 019694 170 PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQP 249 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (337)
-++++|..|++.++++++++.++++++++.|++|+||||||||+++|+++|++|+..+|.++++++++++++++|.|++|
T Consensus 5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P 84 (107)
T 3thg_A 5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQP 84 (107)
T ss_dssp CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhhhhh
Q 019694 250 RMTMEKLLEYGNMIVQEQENVKR 272 (337)
Q Consensus 250 ~~~~~~l~~~g~~l~~eq~~~~~ 272 (337)
.+|+++|+++|++|++||++|++
T Consensus 85 ~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 85 KMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCHHHHHHHHHHHHTTC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=3e-24 Score=199.78 Aligned_cols=176 Identities=21% Similarity=0.277 Sum_probs=139.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..++.+|+|++|+||||||||+|+++++..++.+++.+++.++...+.+...+.++.+|+.+ ....|+++||||||
T Consensus 67 ~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~iDeid 142 (278)
T 1iy2_A 67 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID 142 (278)
T ss_dssp HTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHH----HTSCSEEEEEETHH
T ss_pred HcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHH----HhcCCcEEehhhhH
Confidence 45788899999999999999999999999999999999998888888888878888899888 76789999999999
Q ss_pred cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694 95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 170 (337)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P 170 (337)
.+...+... .......+.+.+++ ..++ |. .....++++++||+++.||++++|++||++.+++ |
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~ll-~~ls--------gg---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 210 (278)
T 1iy2_A 143 AVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210 (278)
T ss_dssp HHHCC--------CHHHHHHHHHHH-HHHT--------TC---CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCC
T ss_pred hhhcccccccCCcchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCc
Confidence 887554311 01111223333332 3333 33 3345678999999999999999999999999998 9
Q ss_pred CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhH
Q 019694 171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~ 206 (337)
+.++|.+|++.+++... ++...++..++||+|++|.
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 99999999998876543 4457889999999999986
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=2.3e-22 Score=213.21 Aligned_cols=176 Identities=22% Similarity=0.309 Sum_probs=150.1
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
..+++++.+|||+||||||||++|+++|.+++.+++.++++++.+.+.|+.+..++.+|..+ ....|+++||||||
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid 307 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELD 307 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHH----HHHCSEEEEEESGG
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHH----HhcCCcEEEeccHH
Confidence 45889999999999999999999999999999999999999999999999999999999999 77899999999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 172 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~ 172 (337)
.++..++ ....... +.+...|+.+++ +. .....+.+|+|||+++.+|+++.|++||++.+.+ |+.
T Consensus 308 ~l~~~~~-~~~~~~~-~~~~~~Ll~ll~--------g~---~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 308 AIAPKRE-KTHGEVE-RRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp GTSCTTS-CCCSHHH-HHHHHHHHHHHH--------SS---CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred Hhhhccc-cccchHH-HHHHHHHHHHhh--------hh---cccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 9987765 2222222 334445666666 43 3457899999999999999999999999999888 999
Q ss_pred HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.++.... .+...++..+.+|+++++..
T Consensus 375 ~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~ 413 (806)
T 1ypw_A 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp HHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHH
Confidence 999999998887654 34578999999999999864
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=7.4e-24 Score=211.01 Aligned_cols=174 Identities=10% Similarity=0.030 Sum_probs=113.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
.+..+|+++|||||||||||++|+++|++++ .+|+.++++++.++++|+.+. +++.|..|.. .+...|+||||||+
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEi 135 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEV 135 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEech
Confidence 4667789999999999999999999999999 999999999999999999987 8888887622 23568999999999
Q ss_pred ccccccCCCCcc---cchhhH---------------hHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694 94 DAGAGRMGGTTQ---YTVNNQ---------------MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 155 (337)
Q Consensus 94 D~l~~~~~~~~~---~~~~~~---------------~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~ 155 (337)
|++++++++... .....+ +...++ ..++. .+. .....|+|++|||+++.+|+
T Consensus 136 d~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll-~~l~~------~~~---~~~~~v~i~attn~~~~ld~ 205 (456)
T 2c9o_A 136 TELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIF-ESLQK------ERV---EAGDVIYIEANSGAVKRQGR 205 (456)
T ss_dssp EEEEEC--------------CEEEEEEETTEEEEEEECHHHH-HHHHH------TTC---CTTEEEEEETTTCCEEEEEE
T ss_pred hhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHH-HHHhh------ccC---CCCCEEEEEcCCCCcccCCh
Confidence 999977652211 000000 111111 11110 011 22334566799999999999
Q ss_pred hhccCCCceE----EEeCCC--HHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhH
Q 019694 156 PLIRDGRMEK----FYWAPT--REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 156 aLlR~gR~d~----~i~~P~--~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~ 206 (337)
+++|+||||+ .+..|+ .++|.+|++.+... +.+.++..++| |+|+.
T Consensus 206 a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~ 257 (456)
T 2c9o_A 206 CDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDIL 257 (456)
T ss_dssp ETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC------------
T ss_pred hhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHH
Confidence 9999999999 333364 36677776555432 34556666677 66665
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=1.8e-19 Score=166.57 Aligned_cols=167 Identities=12% Similarity=0.121 Sum_probs=115.8
Q ss_pred hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChH----HHHHHHHHHHHHHHHhcCceEE
Q 019694 13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~----~~ir~~f~~A~~~~~~~~p~Il 88 (337)
+...+..++.++||+||||||||++|+++|++++.+++.+++++ .+.|... ..++..|..+ ....++||
T Consensus 56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~vl 128 (272)
T 1d2n_A 56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDA----YKSQLSCV 128 (272)
T ss_dssp HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHH----HTSSEEEE
T ss_pred HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHH----HhcCCcEE
Confidence 33445678899999999999999999999999999999998765 3344433 4566777777 67789999
Q ss_pred EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEe
Q 019694 89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~ 168 (337)
||||||.+++.+..+. ... ..+.+.|..+++ +. .....+++||+|||.++.+++..++ +||+..+.
T Consensus 129 ~iDEid~l~~~~~~~~--~~~-~~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~ 194 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGP--RFS-NLVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIH 194 (272)
T ss_dssp EECCHHHHTTCBTTTT--BCC-HHHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEE
T ss_pred EEEChhhhhccCCCCh--hHH-HHHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccceEEc
Confidence 9999999876553111 111 233345545554 21 1234568899999999988884333 59999999
Q ss_pred CCCHHHHHHHHHHhccCCCCCHH---HHHHHhcCC
Q 019694 169 APTREDRIGVCKGIFRNDNVADD---DIVKLVDTF 200 (337)
Q Consensus 169 ~P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf 200 (337)
+|...+|.+|...+.....++.+ .+++.+.||
T Consensus 195 ~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 195 VPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp CCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred CCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 98777766665555444456654 444445554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=7.8e-19 Score=164.39 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=117.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC-------CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~-------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I 90 (337)
.+++..+||+||||||||++|+++|+.++ .+++.++++++.+.+.|.....++..|..+ .++||||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i 136 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI 136 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence 35567899999999999999999999883 389999999999999999988888888887 6789999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCceE
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 165 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~d~ 165 (337)
||+|.++..+++. .....+...|+.+++ ....++.||+|||... .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~~----~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNER----DYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCcc----cccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 9999998654311 112234445656666 2346789999998654 35788887 8988
Q ss_pred EEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHH
Q 019694 166 FYWA--PTREDRIGVCKGIFRNDN--VADDDIVKL 196 (337)
Q Consensus 166 ~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l 196 (337)
.+.+ |+.+++.+|++.++...+ ++.+.+..+
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l 232 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETAL 232 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 8888 999999999999887554 444444333
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=2.5e-18 Score=174.91 Aligned_cols=166 Identities=19% Similarity=0.280 Sum_probs=111.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------CCCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I 90 (337)
.+..+||+||||||||++|+++|..++.+++.++.+.+.. .++|.....+...|..| ....| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence 4678999999999999999999999999999998876543 45666656666667666 54555 9999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc--CCCCCceEEEEeCCCCCCcchhccCCCceEEEe
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~--~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~ 168 (337)
||||++...+.+. ....|++++++.+...+...+.. ....+++||+|||+++.++++|++ ||+. +.
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~v-i~ 249 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEI-IN 249 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEE-EE
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcce-ee
Confidence 9999987654311 23456667775443333222211 234789999999999999999998 8864 66
Q ss_pred C--CCHHHHHHHHHHhccC------------CCCCHHHHHHHhcCCCc
Q 019694 169 A--PTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFPG 202 (337)
Q Consensus 169 ~--P~~~~R~~Il~~~~~~------------~~l~~~~la~l~~gf~g 202 (337)
+ |+.+++.+|++.++.. ..++.+.+..++.+|++
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 6 9999999999887621 13456777777776664
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=8.6e-18 Score=156.57 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=112.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-CCCCCh-HHHHHHHHHHHHHHHH-hcCceEEEeccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAADIIK-KGKMCCLMINDLDA 95 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-~~~Ge~-~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~ 95 (337)
..|.++||+||||||||++|+++|+.++.+++.++++.+.+ +++|.. ...++.++..+...+. ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 45789999999999999999999999999999999998876 566642 3456666654311112 23578999999999
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEE----eCCCCCCcchhccCCCceEEEeC--
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYWA-- 169 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~T----TN~~~~ld~aLlR~gR~d~~i~~-- 169 (337)
+.....+ .........+...|+.+++........+ .....++.+|+| ++.+..++++|++ ||+..+.+
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 8865531 2233344445667777777322111111 134567889998 4678889999986 89877888
Q ss_pred CCHHHHHHHHHH
Q 019694 170 PTREDRIGVCKG 181 (337)
Q Consensus 170 P~~~~R~~Il~~ 181 (337)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999874
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=1.4e-18 Score=172.26 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-CCCCC-hHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-~~~Ge-~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~ 97 (337)
+|+++||+||||||||++|+++|+.++.+++.++++.+.+ +|+|+ .+..++.+|..|..+ +++||+|.+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~~ 120 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKNR 120 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhhh
Confidence 6789999999999999999999999999999999999888 69995 789999999998333 3489998875
Q ss_pred ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEE-eCCCCCCcchhccCCCceEEEeC--CCHH-
Q 019694 98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYWA--PTRE- 173 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~T-TN~~~~ld~aLlR~gR~d~~i~~--P~~~- 173 (337)
.... .....+.++ .|+..+| |.. ....| +++ ||+++.||+||+|+||||+.|++ |+..
T Consensus 121 ~~~~----~~~e~rvl~-~LL~~~d--------g~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~ 182 (444)
T 1g41_A 121 ARAE----DVAEERILD-ALLPPAK--------NQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccch----hhHHHHHHH-HHHHHhh--------ccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCcc
Confidence 4322 222233443 3333444 542 22333 555 99999999999999999999999 7776
Q ss_pred HHHHHH
Q 019694 174 DRIGVC 179 (337)
Q Consensus 174 ~R~~Il 179 (337)
.|.+|+
T Consensus 183 ~~~ei~ 188 (444)
T 1g41_A 183 MGVEIM 188 (444)
T ss_dssp ------
T ss_pred chhhhh
Confidence 577765
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=3.8e-18 Score=164.45 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=110.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC-CCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~-~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
.++.++||+||||||||++|+++|+.++.+++.++++++... |+|.. ...++..|..+...+....++||||||||++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 367899999999999999999999999999999999988744 66664 4566667666533334457899999999998
Q ss_pred cccCCCC-cccchhhHhHHHHHHhhhCCCccccCC---Cc------cccCCCCCceEEEEeCCC----------CC----
Q 019694 97 AGRMGGT-TQYTVNNQMVNATLMNIADNPTCVQLP---GM------YNKEENPRVPIIVTGNDF----------ST---- 152 (337)
Q Consensus 97 ~~~~~~~-~~~~~~~~~v~~~Ll~lld~~~~~~~~---g~------~~~~~~~~V~vI~TTN~~----------~~---- 152 (337)
...+++. .......+.+...|+.+++. ..+.++ +. .......++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~leg-~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIEG-TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHHC-C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhcC-ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 8665422 22333344477788888882 222111 10 001234567777777743 11
Q ss_pred -------------------------------CcchhccCCCceEEEeC--CCHHHHHHHHHH
Q 019694 153 -------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCKG 181 (337)
Q Consensus 153 -------------------------------ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~ 181 (337)
+.|+|+ +||+.++.+ |+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~--~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI--GRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHH--TTCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh--cccCeeeecCCCCHHHHHHHHHH
Confidence 678887 499999877 899999999875
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=4.4e-17 Score=139.66 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=93.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
..+..++|+||||||||++|+++++++ +.+++.++.+.+. ..+.|.....++..+... .+...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence 457789999999999999999999986 6788888877665 234444445555555544 2356789
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 161 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g 161 (337)
||+|||+|.+....+..... .+...|..+++ ..++.+|+|||.+. .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAM-----DAGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CC-----CCHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchH-----HHHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 99999999987543211111 12223333333 24678999999886 78999998
Q ss_pred CceEEEeC--CCHHHHHHHH
Q 019694 162 RMEKFYWA--PTREDRIGVC 179 (337)
Q Consensus 162 R~d~~i~~--P~~~~R~~Il 179 (337)
||+. +.+ |+.++|.+|+
T Consensus 176 r~~~-i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQK-VFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEE-EECCCCCHHHHHTTC
T ss_pred Hhce-eecCCCCHHHHHHHh
Confidence 8884 566 9999998875
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=8.3e-16 Score=147.16 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=97.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCC-------------------------------
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAG------------------------------- 63 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~G------------------------------- 63 (337)
+..+++++||+||||||||++|+++|++++. +++.+++..+.+.+.+
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 4455799999999999999999999999985 7778877664443333
Q ss_pred ------------------ChHHHHHHHHHHHHHHHH-hc----CceEEEecccccccccCCCCcccchhhHhHHHHHHhh
Q 019694 64 ------------------EPAKLIRQRYREAADIIK-KG----KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120 (337)
Q Consensus 64 ------------------e~~~~ir~~f~~A~~~~~-~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~l 120 (337)
+....++..|..+..... .+ .|+||||||+|.+.. .....|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~ 212 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRA 212 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHH
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHH
Confidence 223445566655533222 22 278999999997632 122344444
Q ss_pred hCCCccccCCCccccCCCCCceEEEEe-----------CCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCC-
Q 019694 121 ADNPTCVQLPGMYNKEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND- 186 (337)
Q Consensus 121 ld~~~~~~~~g~~~~~~~~~V~vI~TT-----------N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~- 186 (337)
++ .....+++++|. |.+..++++|++ ||.. +.+ |+.+++.+|++..+...
T Consensus 213 le-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 213 LE-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp TT-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTT
T ss_pred hh-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcC
Confidence 44 122234444443 357889999998 7766 455 89999999998887654
Q ss_pred -CCCHHHH
Q 019694 187 -NVADDDI 193 (337)
Q Consensus 187 -~l~~~~l 193 (337)
.++.+.+
T Consensus 277 ~~~~~~~l 284 (368)
T 3uk6_A 277 VEMSEDAY 284 (368)
T ss_dssp CCBCHHHH
T ss_pred CCCCHHHH
Confidence 3444433
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.67 E-value=8.2e-16 Score=145.84 Aligned_cols=158 Identities=13% Similarity=0.083 Sum_probs=109.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
.++..|||+||||||||++|+++|++++.+++.++++.+. ....+...+.. ...+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN------LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh------ccCCCEEEEechhhcCH
Confidence 4567899999999999999999999999999999987552 22222232222 35789999999997642
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCc-----cccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-----YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~-----~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
.....|+..+++.....+.+. ......+++.+|++||+...++++|++ ||+..+.+ |+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 123344455553221111111 001123368999999999999999987 89888888 99
Q ss_pred HHHHHHHHHHhccCCC--CCHHHHHHHhcCCCch
Q 019694 172 REDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 203 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~ga 203 (337)
.+++..+++.+....+ ++.+.+..+...+.|.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 9999999988876554 5566666666655543
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=9.2e-15 Score=136.56 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=102.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------------CCCChHHHHHHHHHHHHHHHHhcC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGK 84 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~~~ 84 (337)
++..+||+||||||||++|+++|+.+ +.+++.++++.+... +.|... ...+..+ +....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~---~~~~~~~---~~~~~ 119 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE---GGQLTEA---VRRRP 119 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT---CCHHHHH---HHHCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc---cchHHHH---HHhCC
Confidence 34579999999999999999999998 456888888765432 111110 0122222 23445
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC---------------
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--------------- 149 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~--------------- 149 (337)
.+||||||+|.+.. .+...|+.++++..... +........++++|+|||.
T Consensus 120 ~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~--~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~ 184 (311)
T 4fcw_A 120 YSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTD--SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPY 184 (311)
T ss_dssp SEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEC--TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCS
T ss_pred CeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEc--CCCCEEECCCcEEEEecccCHHHHHhhhcccccH
Confidence 68999999997632 23345566665332211 1101123457789999998
Q ss_pred -----------CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccC-----------CCCCHHHHHHHhc-CC
Q 019694 150 -----------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD-TF 200 (337)
Q Consensus 150 -----------~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~-----------~~l~~~~la~l~~-gf 200 (337)
...++++|+. ||+..+.+ |+.+++.+|++.++.. ..++.+.+..+.. +|
T Consensus 185 ~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 185 ERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGY 258 (311)
T ss_dssp STHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCC
Confidence 5578888885 99887777 8999999998877643 1345566666555 44
No 42
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=2.2e-15 Score=129.06 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=85.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKM 85 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p 85 (337)
..+..+||+||||||||++|+++++++ +.+++.++.+.+. ..+.|.....++..+..+ . ...|
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 116 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQ 116 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTS
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCc
Confidence 446789999999999999999999987 6777777766654 223344444555555554 4 3478
Q ss_pred eEEEecccccccccCC-CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694 86 CCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 159 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~-~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR 159 (337)
.+|||||+|.+...+. ...+. .+...|..+++ ..++.+|++||.+. .++++++|
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGAL-----DAGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSC-----CTHHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred eEEEEeCHHHhcccccccccch-----HHHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH
Confidence 9999999999875432 11111 12223333333 25678999999875 68999998
Q ss_pred CCCceEEEeC
Q 019694 160 DGRMEKFYWA 169 (337)
Q Consensus 160 ~gR~d~~i~~ 169 (337)
||+. +.+
T Consensus 177 --R~~~-i~i 183 (187)
T 2p65_A 177 --RFQQ-ILV 183 (187)
T ss_dssp --HEEE-EEC
T ss_pred --hcCc-ccC
Confidence 8986 665
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.59 E-value=1.2e-14 Score=136.62 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=103.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
..+..+||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||||.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence 45678999999999999999999999999999998875522 22222222220 25788999999997642
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc-----cCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-----~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
. ....|+.++++.....+.+... .....++.+|+|||++..++++|.+ ||+..+.+ |+
T Consensus 105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 1 1233344444221111111100 0122468999999999999999986 88767777 99
Q ss_pred HHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694 172 REDRIGVCKGIFRND--NVADDDIVKLVDTF 200 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~--~l~~~~la~l~~gf 200 (337)
.+++.+++..++... .++.+.+..+....
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGRRS 200 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 999999998887654 45555554444443
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=6.1e-15 Score=147.23 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=97.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il 88 (337)
+.+..+||+||||||||++|+++|+.+ +.+++.++++ .++.|+.+..++.+|..+ ....++||
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~----~~~~~~iL 271 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI----RQAGNIIL 271 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----HhcCCeEE
Confidence 445688999999999999999999997 7788888877 677787777788889888 77789999
Q ss_pred EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCc
Q 019694 89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 163 (337)
Q Consensus 89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~ 163 (337)
||| +.. .....|+..+ ..+.+.+|++||... .+|++|.| ||
T Consensus 272 fiD------~~~-----------~a~~~L~~~L---------------~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf 317 (468)
T 3pxg_A 272 FID------AAI-----------DASNILKPSL---------------ARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (468)
T ss_dssp EEC------C-------------------CCCT---------------TSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEe------Cch-----------hHHHHHHHhh---------------cCCCEEEEecCCHHHHHHHhhcCHHHHH--hC
Confidence 999 110 0111221111 245789999999988 69999998 89
Q ss_pred eEEEeC--CCHHHHHHHHHHhccC----CC--CCH---HHHHHHhcCCCch
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRN----DN--VAD---DDIVKLVDTFPGQ 203 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~----~~--l~~---~~la~l~~gf~ga 203 (337)
.. +.+ |+.+++.+|++.+... .+ ++. ..++.++.+|.+.
T Consensus 318 ~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 318 QP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp EE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred cc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 86 666 9999999999988755 23 333 4455566665543
No 45
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=6.5e-15 Score=142.29 Aligned_cols=140 Identities=16% Similarity=0.242 Sum_probs=80.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
+.+..+||+||||||||++|+++|+.++.+++.++++.+. .++.|.. ...+...+..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 4567899999999999999999999999999999988875 4566654 3445555554422233457899999999998
Q ss_pred cccCCCC-cccchhhHhHHHHHHhhhCCCccc-c-CCCc------cccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 97 AGRMGGT-TQYTVNNQMVNATLMNIADNPTCV-Q-LPGM------YNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 97 ~~~~~~~-~~~~~~~~~v~~~Ll~lld~~~~~-~-~~g~------~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
...+++. .........+...|+.+++..... . ..+. .......++.+|+||| .+.+++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~ 220 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK 220 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH
Confidence 8654321 111222223566777888733210 0 0000 0012246778899988 4445555544
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=5.7e-15 Score=139.63 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=100.4
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcC
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 84 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~ 84 (337)
.++.+...++ +.+.+++||||||||||++|+++++++ +.+++.+++.++...+.+.........|... ...
T Consensus 25 ~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 98 (324)
T 1l8q_A 25 VVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM-----YKS 98 (324)
T ss_dssp HHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH-----HHT
T ss_pred HHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH-----hcC
Confidence 3444444444 356789999999999999999999998 8899999887654322211111001122221 234
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcchhccCC
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDG 161 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~aLlR~g 161 (337)
++||||||+|.+.+... . .+.++.+++ .. ...+..+||+++|.+. .++++|++
T Consensus 99 ~~vL~iDEi~~l~~~~~-------~----~~~l~~~l~--------~~---~~~~~~iii~~~~~~~~l~~l~~~L~s-- 154 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKER-------T----QIEFFHIFN--------TL---YLLEKQIILASDRHPQKLDGVSDRLVS-- 154 (324)
T ss_dssp CSEEEEECGGGGTTCHH-------H----HHHHHHHHH--------HH---HHTTCEEEEEESSCGGGCTTSCHHHHH--
T ss_pred CCEEEEcCcccccCChH-------H----HHHHHHHHH--------HH---HHCCCeEEEEecCChHHHHHhhhHhhh--
Confidence 88999999998754211 1 112222222 00 1122345555555555 68999987
Q ss_pred Cce--EEEeC-CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694 162 RME--KFYWA-PTREDRIGVCKGIFRND--NVADDDIVKLVDTF 200 (337)
Q Consensus 162 R~d--~~i~~-P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf 200 (337)
||. ..+.+ |+.+++.+|++.++... .++.+.+..+....
T Consensus 155 R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 155 RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 665 66777 77899999998887643 45666565555554
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=1.8e-14 Score=143.14 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=93.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 101 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~ 101 (337)
..+|||||||||||++|+++|+.++.+++.++... ...+.++..|..+........++||||||||.+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 58999999999999999999999999999988642 34566788888886555567899999999998743211
Q ss_pred CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe--CCCCCCcchhccCCCceEEEeC-CCHHHHHHH
Q 019694 102 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA-PTREDRIGV 178 (337)
Q Consensus 102 ~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT--N~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~I 178 (337)
..|+..++ ...+.+|++| |....++++|++ |+..+..- |+.+++..+
T Consensus 124 -------------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 -------------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred -------------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 11223333 1446777777 445689999998 66643333 999999999
Q ss_pred HHHhccC
Q 019694 179 CKGIFRN 185 (337)
Q Consensus 179 l~~~~~~ 185 (337)
++..+..
T Consensus 174 l~~~l~~ 180 (447)
T 3pvs_A 174 LTQAMED 180 (447)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888765
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=2.2e-14 Score=150.77 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=111.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
+.+..+||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|..+ ....++
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~ 280 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNS 280 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCE
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCe
Confidence 457789999999999999999999987 5667788777776 468889888899999888 767789
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----CCCcchhccCC
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDG 161 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----~~ld~aLlR~g 161 (337)
||||||+|.+.+..+. ... .......|..++ ...++.+|++||.+ -.+|++|.|
T Consensus 281 iL~IDEi~~l~~~~~~-~~~---~~~~~~~L~~~l---------------~~~~~~~I~at~~~~~~~~~~~d~aL~~-- 339 (758)
T 1r6b_X 281 ILFIDEIHTIIGAGAA-SGG---QVDAANLIKPLL---------------SSGKIRVIGSTTYQEFSNIFEKDRALAR-- 339 (758)
T ss_dssp EEEETTTTTTTTSCCS-SSC---HHHHHHHHSSCS---------------SSCCCEEEEEECHHHHHCCCCCTTSSGG--
T ss_pred EEEEechHHHhhcCCC-Ccc---hHHHHHHHHHHH---------------hCCCeEEEEEeCchHHhhhhhcCHHHHh--
Confidence 9999999999865431 111 112222332222 24578899999964 357899998
Q ss_pred CceEEEeC--CCHHHHHHHHHHhccC------CCCCH---HHHHHHhcCCCc
Q 019694 162 RMEKFYWA--PTREDRIGVCKGIFRN------DNVAD---DDIVKLVDTFPG 202 (337)
Q Consensus 162 R~d~~i~~--P~~~~R~~Il~~~~~~------~~l~~---~~la~l~~gf~g 202 (337)
||.. +.+ |+.++|.+|++.+... ..++. ..++.++.+|..
T Consensus 340 Rf~~-i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 340 RFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_dssp GEEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCT
T ss_pred CceE-EEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcc
Confidence 8984 666 9999999998876632 23444 344555555433
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=2.2e-14 Score=135.32 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=95.2
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCce
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMC 86 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ 86 (337)
.+++++. ..+.|..+|++||||||||++|+++|++++.+++.+++++. + ...++..+........ .+.+.
T Consensus 37 ~l~~~l~--~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~--~~~i~~~~~~~~~~~~~~~~~~ 107 (324)
T 3u61_B 37 TFKSITS--KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K--IDFVRGPLTNFASAASFDGRQK 107 (324)
T ss_dssp HHHHHHH--TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C--HHHHHTHHHHHHHBCCCSSCEE
T ss_pred HHHHHHH--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C--HHHHHHHHHHHHhhcccCCCCe
Confidence 3444444 33567889999999999999999999999999999998752 2 3445555444311111 23789
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEE
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 166 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~ 166 (337)
||||||+|.+.+. .....|+.+++ ....++.+|+|||.+..++++|++ |+..
T Consensus 108 vliiDEi~~l~~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~- 159 (324)
T 3u61_B 108 VIVIDEFDRSGLA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRV- 159 (324)
T ss_dssp EEEEESCCCGGGH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEE-
T ss_pred EEEEECCcccCcH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcE-
Confidence 9999999987411 12234444444 123557899999999999999998 6654
Q ss_pred EeC--CCHHHHHHHHHH
Q 019694 167 YWA--PTREDRIGVCKG 181 (337)
Q Consensus 167 i~~--P~~~~R~~Il~~ 181 (337)
+.+ |+.++|.+|+..
T Consensus 160 i~~~~~~~~e~~~il~~ 176 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQ 176 (324)
T ss_dssp EECCCCCHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 565 999987666433
No 50
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=5.9e-14 Score=147.62 Aligned_cols=137 Identities=11% Similarity=0.141 Sum_probs=97.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~ 99 (337)
.+||+||||||||++|+++|+.+ +.+++.++++++.+.+..... ..+... +...++||||||||++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~----~l~~~~----~~~~~~vl~lDEi~~~~~- 593 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV----RRKPYSVVLLDAIEKAHP- 593 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGGSCH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc----hhhHHH----HhCCCeEEEEeCccccCH-
Confidence 69999999999999999999997 678999999999887766521 122222 455778999999987521
Q ss_pred CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC------------CcchhccCCCceEEE
Q 019694 100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------LYAPLIRDGRMEKFY 167 (337)
Q Consensus 100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~------------ld~aLlR~gR~d~~i 167 (337)
.+...|+.++++.......| ......++.||+|||.+.. +.|+|+. ||+..+
T Consensus 594 ------------~~~~~Ll~~le~g~~~~~~g--~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i 657 (758)
T 3pxi_A 594 ------------DVFNILLQVLEDGRLTDSKG--RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEII 657 (758)
T ss_dssp ------------HHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEE
T ss_pred ------------HHHHHHHHHhccCeEEcCCC--CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEE
Confidence 34456667776422221111 1234568899999997654 6788875 998888
Q ss_pred eC--CCHHHHHHHHHHhcc
Q 019694 168 WA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 168 ~~--P~~~~R~~Il~~~~~ 184 (337)
.+ |+.+++.+|++.++.
T Consensus 658 ~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp ECC--CHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHH
Confidence 88 888999999776653
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.55 E-value=5.6e-15 Score=157.49 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHh-cCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKM 85 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~-~~p 85 (337)
+.+.++||+||||||||++|+++|+.+ +.+++.++.+.+. .++.|+.+..++.+|..+ .. ..|
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~ 264 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGE 264 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSS
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCC
Confidence 345678999999999999999999997 8889999998886 567888888888888887 64 478
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----CCcchhccCC
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDG 161 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----~ld~aLlR~g 161 (337)
+||||||+|.+.+..+... ...+...|..++. ...+.+|++||.++ .++++|+|
T Consensus 265 ~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r-- 322 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER-- 322 (854)
T ss_dssp EEEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--
T ss_pred eEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--
Confidence 9999999999875543111 1112222323332 35678999999775 47999998
Q ss_pred CceEEEeC--CCHHHHHHHHHHhcc------CCCCCH---HHHHHHhcCCCc
Q 019694 162 RMEKFYWA--PTREDRIGVCKGIFR------NDNVAD---DDIVKLVDTFPG 202 (337)
Q Consensus 162 R~d~~i~~--P~~~~R~~Il~~~~~------~~~l~~---~~la~l~~gf~g 202 (337)
||+. +.+ |+.+++.+|++.++. ...++. ..++.++.+|..
T Consensus 323 Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 323 RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 8886 555 999999999876654 223343 345566655533
No 52
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.5e-14 Score=134.36 Aligned_cols=138 Identities=11% Similarity=0.044 Sum_probs=93.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccC----------C------CCChHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------N------AGEPAKLIRQ 71 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~----------~------~Ge~~~~ir~ 71 (337)
...|..++|+||||||||++++++++++ ...++.+++..+.+. . .|.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3568899999999999999999999998 356788887765332 1 2344556667
Q ss_pred HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 72 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 72 ~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
.|.... -....++||+|||+|.+. . + ..|.++++ |......++.||+++|..+
T Consensus 122 ~f~~~~--~~~~~~~ii~lDE~d~l~---~---q---------~~L~~l~~----------~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 122 YITNVP--KAKKRKTLILIQNPENLL---S---E---------KILQYFEK----------WISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSC--GGGSCEEEEEEECCSSSC---C---T---------HHHHHHHH----------HHHCSSCCEEEEEECCSSC
T ss_pred HHHHhh--hccCCceEEEEecHHHhh---c---c---------hHHHHHHh----------cccccCCcEEEEEEecCcc
Confidence 776530 025678999999999986 1 1 12222222 1113457899999999987
Q ss_pred CCcch----hccCCCce-EEEeC--CCHHHHHHHHHHhcc
Q 019694 152 TLYAP----LIRDGRME-KFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 152 ~ld~a----LlR~gR~d-~~i~~--P~~~~R~~Il~~~~~ 184 (337)
..+.. +.. ||. ..+.+ ++.++..+|++..+.
T Consensus 175 ~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 54433 333 564 34555 899999999776654
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=1.8e-14 Score=151.62 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=89.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 88 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il 88 (337)
+.+..+||+||||||||++|+++|+.+ +.+++.++. ..+|.|+.+..++.+|..+ ....|+||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~----~~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEI----RQAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHH----HhcCCEEE
Confidence 456679999999999999999999997 777887776 5667888888889999998 77889999
Q ss_pred EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCc
Q 019694 89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 163 (337)
Q Consensus 89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~ 163 (337)
||| + .. .....|+.. -..+.+.+|+|||... .+|++|.| ||
T Consensus 272 fiD---------~-~~-------~~~~~L~~~---------------l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID---------A-AI-------DASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC---------C----------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc---------C-ch-------hHHHHHHHH---------------HhcCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 1 00 011122111 1245789999999998 79999999 88
Q ss_pred eEEEeC--CCHHHHHHHHHHhccC
Q 019694 164 EKFYWA--PTREDRIGVCKGIFRN 185 (337)
Q Consensus 164 d~~i~~--P~~~~R~~Il~~~~~~ 185 (337)
.. +++ |+.+++.+|++.+...
T Consensus 318 ~~-i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QP-IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EE-EECCCCCHHHHHHHHHHTTTT
T ss_pred cE-EEeCCCCHHHHHHHHHHHHHH
Confidence 54 777 9999999999977654
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.53 E-value=1.4e-13 Score=120.28 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=92.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH--HHhcCceEEEeccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 95 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~--~~~~~p~Il~IDEiD~ 95 (337)
.++|+||||||||++++++++++ ...++.++.+... ....++..+...... .....+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 39999999999999999999986 3456667665322 112223332222100 0135789999999997
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+... ....|+.+++ ....++.+|+|||.+..+++++.+ |+. .+.+ |+.+
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~ 164 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKE 164 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHH
Confidence 6421 1223444444 123567899999999999999987 676 5566 8899
Q ss_pred HHHHHHHHhccCC--CCCHHHHHHHhc
Q 019694 174 DRIGVCKGIFRND--NVADDDIVKLVD 198 (337)
Q Consensus 174 ~R~~Il~~~~~~~--~l~~~~la~l~~ 198 (337)
+..+++..++... .++.+.+..+..
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~l~~ 191 (226)
T 2chg_A 165 AMKKRLLEICEKEGVKITEDGLEALIY 191 (226)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999988877533 355555544443
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=3.5e-14 Score=136.09 Aligned_cols=153 Identities=13% Similarity=0.200 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----------CCCcEEecCCccc-c-----------------CCCCChHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEPAKLI 69 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l-----------~~~~i~vs~s~l~-~-----------------~~~Ge~~~~i 69 (337)
..|..++|+||||||||++|+++++++ +.+++.+++.... + ...|....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 120 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLG-- 120 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH--
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH--
Confidence 457799999999999999999999987 8889988866432 1 01121111
Q ss_pred HHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694 70 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 149 (337)
Q Consensus 70 r~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~ 149 (337)
..+......+....+ ||||||+|.+..... + .. .+..+++ . . .++.+|+|||.
T Consensus 121 -~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---~-----~~---~l~~l~~---------~----~-~~~~iI~~t~~ 173 (384)
T 2qby_B 121 -EYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---G-----DI---VLYQLLR---------S----D-ANISVIMISND 173 (384)
T ss_dssp -HHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---S-----HH---HHHHHHT---------S----S-SCEEEEEECSS
T ss_pred -HHHHHHHHHhccCCC-EEEEECHHHhccCCC---C-----ce---eHHHHhc---------C----C-cceEEEEEECC
Confidence 122222222244444 999999998754321 0 11 0222223 1 1 67899999999
Q ss_pred C---CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc----CCCCCH---HHHHHHhcCCCc
Q 019694 150 F---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR----NDNVAD---DDIVKLVDTFPG 202 (337)
Q Consensus 150 ~---~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~----~~~l~~---~~la~l~~gf~g 202 (337)
. +.+++++++ ||...+.+ |+.++..+|++..+. ...++. +.+++.+.+.+|
T Consensus 174 ~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 174 INVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp TTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred CchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 8 678999887 66556666 899999999888654 234554 445555654444
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=3.2e-14 Score=149.47 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC-----CCCChHHHHH-----HHHHHHHHHHHhcCceEEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLIR-----QRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~-----~~Ge~~~~ir-----~~f~~A~~~~~~~~p~Il~I 90 (337)
...+||+||||||||++|+++|+.++.+++.++++++... .+|.+...+. .+.. .++...++||||
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~----~~~~~~~~vl~l 563 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTD----AVIKHPHAVLLL 563 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHH----HHHHCSSEEEEE
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHH----HHHhCCCcEEEE
Confidence 3469999999999999999999999999999999887543 3343211111 1122 224556899999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------------
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS------------------- 151 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~------------------- 151 (337)
||||++.. .+...|+.++++.....-.|. .....+++||+|||...
T Consensus 564 DEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~--~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~ 628 (758)
T 1r6b_X 564 DEIEKAHP-------------DVFNILLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDA 628 (758)
T ss_dssp ETGGGSCH-------------HHHHHHHHHHHHSEEEETTTE--EEECTTEEEEEEECSSCC-----------------C
T ss_pred eCccccCH-------------HHHHHHHHHhcCcEEEcCCCC--EEecCCeEEEEecCcchhhhhhcccCccccchHHHH
Confidence 99997521 244566677763221111111 12346789999999854
Q ss_pred ------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694 152 ------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 152 ------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~ 184 (337)
.++|+|+. |||.++.+ |+.+++..|+..++.
T Consensus 629 ~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 629 MEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67888885 99888888 889999999887764
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=9.6e-14 Score=132.48 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=97.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC----------------CCCChHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQRY 73 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~----------------~~Ge~~~~ir~~f 73 (337)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+.. ..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~ 118 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVG---EVY 118 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHH---HHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHH
Confidence 557799999999999999999999988 788888887653221 1222222 222
Q ss_pred HHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCC-CCCceEEEEeCCC-
Q 019694 74 REAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF- 150 (337)
Q Consensus 74 ~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~-~~~V~vI~TTN~~- 150 (337)
......+. .+.|+||||||+|.+..... . ...|..+++. . .... ..++.+|+|||.+
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~--------~---~~~l~~l~~~--------~-~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPG--------G---QDLLYRITRI--------N-QELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHSTT--------H---HHHHHHHHHG--------G-GCC-----CEEEEECSCST
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccCC--------C---ChHHHhHhhc--------h-hhcCCCceEEEEEEECCCc
Confidence 22222223 45689999999998753320 1 1222222220 0 0011 4678999999998
Q ss_pred --CCCcchhccCCCceE-EEeC--CCHHHHHHHHHHhccC----CCCCH---HHHHHHhc
Q 019694 151 --STLYAPLIRDGRMEK-FYWA--PTREDRIGVCKGIFRN----DNVAD---DDIVKLVD 198 (337)
Q Consensus 151 --~~ld~aLlR~gR~d~-~i~~--P~~~~R~~Il~~~~~~----~~l~~---~~la~l~~ 198 (337)
+.+++++.+ ||.. .+.+ |+.+++.+|++..+.. ..++. +.+++.+.
T Consensus 179 ~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 179 FVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp TSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 788899887 6643 5555 8899999998877642 34444 44555555
No 58
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.49 E-value=4.1e-14 Score=140.24 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=97.7
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
.++.+...++. +..++||||||||||+||+++++++ +.+++.+++.++...+.+.........|... ..
T Consensus 119 ~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~ 192 (440)
T 2z4s_A 119 AALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK----YR 192 (440)
T ss_dssp HHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHH----HT
T ss_pred HHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHH----hc
Confidence 33444444443 6789999999999999999999988 8888888887653221110000000112211 12
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Ccchhc
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLI 158 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~aLl 158 (337)
..+.||||||+|.+.+... ....+..++..+.+ .+..+|+||++ +.. ++++|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~-------~q~~l~~~l~~l~~----------------~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTG-------VQTELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp TTCSEEEEECGGGGSSCHH-------HHHHHHHHHHHHHT----------------TTCEEEEEESSCGGGCSSCCHHHH
T ss_pred CCCCEEEEeCcccccCChH-------HHHHHHHHHHHHHH----------------CCCeEEEEECCCHHHHHHHHHHHH
Confidence 2789999999998764311 11112222211111 22345556665 443 788988
Q ss_pred cCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694 159 RDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 202 (337)
Q Consensus 159 R~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g 202 (337)
+ ||. ..+.+ |+.++|.+|++..+... .++.+.+..++....|
T Consensus 250 s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g 297 (440)
T 2z4s_A 250 S--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD 297 (440)
T ss_dssp H--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS
T ss_pred h--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 7 664 55666 99999999998887533 4555555555544444
No 59
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=4.4e-14 Score=142.56 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=93.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChH-------HHHHHHHHHHHHH-HHhcCceEEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADI-IKKGKMCCLMI 90 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~-------~~ir~~f~~A~~~-~~~~~p~Il~I 90 (337)
.+++++||+||||||||++|+++|++++.+++.++++++.+....+.. ..++..|..+... .....++||||
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM 154 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEE
Confidence 367899999999999999999999999999999999876443211000 0011122221000 01367899999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--CCcchhccCCCceEEEe
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW 168 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--~ld~aLlR~gR~d~~i~ 168 (337)
||+|.+..... . ....|.++++ ..+++||++||... .+ +++.| +...+.
T Consensus 155 DEid~l~~~~~----~------~l~~L~~~l~---------------~~~~~iIli~~~~~~~~l-~~l~~---r~~~i~ 205 (516)
T 1sxj_A 155 DEVDGMSGGDR----G------GVGQLAQFCR---------------KTSTPLILICNERNLPKM-RPFDR---VCLDIQ 205 (516)
T ss_dssp CSGGGCCTTST----T------HHHHHHHHHH---------------HCSSCEEEEESCTTSSTT-GGGTT---TSEEEE
T ss_pred ECCCccchhhH----H------HHHHHHHHHH---------------hcCCCEEEEEcCCCCccc-hhhHh---ceEEEE
Confidence 99998865321 1 1123334443 13445777777643 33 34543 333556
Q ss_pred C--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694 169 A--PTREDRIGVCKGIFRND--NVADDDIVKLVDTF 200 (337)
Q Consensus 169 ~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf 200 (337)
+ |+.+++.+++..++... .++.+.+..++...
T Consensus 206 f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 206 FRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241 (516)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5 99999999988776543 45665555555443
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.45 E-value=3.6e-13 Score=118.88 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC----------------ccccCC--CCChHHHHHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG----------------ELESGN--AGEPAKLIRQRYREAADII 80 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s----------------~l~~~~--~Ge~~~~ir~~f~~A~~~~ 80 (337)
+.|..++|+||||||||+++++++++++......... ++.... .......++.++.......
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence 3466899999999999999999999875432110000 000000 0012223344443320000
Q ss_pred HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694 81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 160 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~ 160 (337)
....+.+|+|||+|.+.. .....|+.+++ ....++.+|+|||++..+++++.+
T Consensus 123 ~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~- 175 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS- 175 (250)
T ss_dssp SSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred hcCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH-
Confidence 134689999999997521 11223444444 224568899999999999999887
Q ss_pred CCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHH
Q 019694 161 GRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDI 193 (337)
Q Consensus 161 gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~l 193 (337)
|+ ..+.+ |+.++..+++..++... .++.+.+
T Consensus 176 -r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~ 210 (250)
T 1njg_A 176 -RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 210 (250)
T ss_dssp -TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred -Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 44 34556 89999999998887644 3444333
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.42 E-value=1.2e-12 Score=121.94 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=96.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH--hcCceEEEecccccc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDAG 96 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~--~~~p~Il~IDEiD~l 96 (337)
+||+||||||||++|+++++++ +.+++.+++++..+. .. ++........... ...+.||+|||+|.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DV----VRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TT----SSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HH----HHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 9999999999999999999986 345777877654321 11 1222222210001 256899999999976
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 174 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~ 174 (337)
... ....|+.+++ ....++.+|++||.+..+++++.+ |+. .+.+ |+.++
T Consensus 115 ~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~ 165 (319)
T 2chq_A 115 TAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEA 165 (319)
T ss_dssp CHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHH
T ss_pred CHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHH
Confidence 321 1122333444 234678899999999999999987 555 4555 89999
Q ss_pred HHHHHHHhccCCCC--CHHHHHHHhcCCCc
Q 019694 175 RIGVCKGIFRNDNV--ADDDIVKLVDTFPG 202 (337)
Q Consensus 175 R~~Il~~~~~~~~l--~~~~la~l~~gf~g 202 (337)
+.+++..++...++ +.+.+..+.....|
T Consensus 166 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999888876544 66666666654443
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=7.5e-13 Score=123.52 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH---hcCceEEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLMI 90 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~---~~~p~Il~I 90 (337)
+.|. +||+||||+|||++|+++++++ +..++.+++++.. ....++..+........ .+.+.||+|
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 3455 9999999999999999999986 3456677665421 23445555544410000 335899999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 169 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~- 169 (337)
||+|.+... ....|+.+++ ....++.+|++||.++.+++++.+ |+. .+.+
T Consensus 114 De~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~ 164 (323)
T 1sxj_B 114 DEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYS 164 (323)
T ss_dssp ESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECC
T ss_pred ECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hce-EEeec
Confidence 999976421 0122333333 223567899999999999999987 454 4555
Q ss_pred -CCHHHHHHHHHHhccCC--CCCHHH---HHHHhcCCCchhh
Q 019694 170 -PTREDRIGVCKGIFRND--NVADDD---IVKLVDTFPGQSI 205 (337)
Q Consensus 170 -P~~~~R~~Il~~~~~~~--~l~~~~---la~l~~gf~gadl 205 (337)
|+.++..+++..++... .++.+. +++.+.|-....+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 89999999998877543 345543 4445544443333
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.41 E-value=5.8e-13 Score=118.65 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
.+..++|+||||||||++|+++++++. ..++.++.+++...... .+. ....+.+|+|||+|.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLE------GLEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGT------TGGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHH------hccCCCEEEEeccccc
Confidence 568999999999999999999999874 67788888776544311 111 1245789999999986
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----CCcchhccCCCce--EEEeC-
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGRME--KFYWA- 169 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----~ld~aLlR~gR~d--~~i~~- 169 (337)
..... ....|+.+++ .. .....+.+|+|||... .+++++.+ |+. ..+.+
T Consensus 117 ~~~~~-----------~~~~l~~~l~--------~~---~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~ 172 (242)
T 3bos_A 117 AGHPL-----------WEEAIFDLYN--------RV---AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ 172 (242)
T ss_dssp TTCHH-----------HHHHHHHHHH--------HH---HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred cCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence 43210 0122333332 00 1112333666666433 45677876 554 67777
Q ss_pred -CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694 170 -PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 202 (337)
Q Consensus 170 -P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g 202 (337)
|+.+++.+++..++... .++.+.+..+...+.|
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 173 PMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 99999999998887643 4566666666655544
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.41 E-value=1.2e-12 Score=139.58 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=94.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCceEEE
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCLM 89 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~Il~ 89 (337)
..+||+||||||||++|+++++.+ +.+++.++++++... .+|.+...+ ...|..+ ++...++|||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl~ 665 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVIL 665 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEEE
Confidence 589999999999999999999998 788999999877543 222211111 0122222 2445678999
Q ss_pred ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC--------------------
Q 019694 90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------------- 149 (337)
Q Consensus 90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-------------------- 149 (337)
|||||++. ..+...|+.++++.... ++.-......+++||+|||.
T Consensus 666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~ 730 (854)
T 1qvr_A 666 FDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 730 (854)
T ss_dssp ESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred EecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence 99998652 13455677777754322 11111223457889999997
Q ss_pred ------CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694 150 ------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 150 ------~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~ 184 (337)
...+.|+|+. |++..+.+ |+.++...|+..++.
T Consensus 731 ~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 731 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 2346677764 89877776 888999999776654
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.40 E-value=1.8e-13 Score=129.71 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=83.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----ecCCcc---------------------ccCCCCChHHHH------
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGEL---------------------ESGNAGEPAKLI------ 69 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----vs~s~l---------------------~~~~~Ge~~~~i------ 69 (337)
+.++||+||||||||++|+++++.++...+. +++... .....|.+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 3459999999999999999999998631100 011100 000112221111
Q ss_pred HHHHHHHH-----HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceE
Q 019694 70 RQRYREAA-----DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPI 143 (337)
Q Consensus 70 r~~f~~A~-----~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~v 143 (337)
...+..+. ..+....+++|||||||.+... ....|+.+++... .+...|.. .....++.+
T Consensus 125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~l 190 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVL 190 (350)
T ss_dssp HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEE
T ss_pred hhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEE
Confidence 11222210 0111224789999999976321 1234444444211 11111210 111247899
Q ss_pred EEEeCCCC-CCcchhccCCCceEEEeC--C-CHHHHHHHHHHhc
Q 019694 144 IVTGNDFS-TLYAPLIRDGRMEKFYWA--P-TREDRIGVCKGIF 183 (337)
Q Consensus 144 I~TTN~~~-~ld~aLlR~gR~d~~i~~--P-~~~~R~~Il~~~~ 183 (337)
|+|||..+ .++++|++ ||+..+.+ | +.+++.+|++..+
T Consensus 191 i~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 191 VGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 99999754 89999998 89887888 5 6788889987654
No 66
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=3.7e-12 Score=120.56 Aligned_cols=139 Identities=12% Similarity=0.188 Sum_probs=91.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC------CCcEEecCCccccCCCCChHHHHHHHHHHHHHH------------HHhcCc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGKM 85 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~------------~~~~~p 85 (337)
+||+||||||||++|+++|++++ ..++.+++++.. ....+++.+...... .....+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCc
Confidence 99999999999999999999864 356777766431 122333333222110 012356
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceE
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 165 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~ 165 (337)
.||||||+|.+... ....|+.+++ ....++.+|++||.++.+++++.+ |+..
T Consensus 135 ~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~~ 186 (353)
T 1sxj_D 135 KIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCSK 186 (353)
T ss_dssp EEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSEE
T ss_pred eEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCce
Confidence 79999999976421 1233444444 123456788899999999999987 6663
Q ss_pred EEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694 166 FYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV 197 (337)
Q Consensus 166 ~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~ 197 (337)
+.+ |+.++...++...+...+ ++.+.+..++
T Consensus 187 -i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 221 (353)
T 1sxj_D 187 -FRFKALDASNAIDRLRFISEQENVKCDDGVLERIL 221 (353)
T ss_dssp -EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred -EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445 889999999888876554 5554444433
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.37 E-value=5.3e-13 Score=126.32 Aligned_cols=142 Identities=12% Similarity=0.086 Sum_probs=87.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHH-HHhcC---ceEEEecccc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPAKLIRQRYREAADI-IKKGK---MCCLMINDLD 94 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~-~~~~~---p~Il~IDEiD 94 (337)
..++||+||||||||++|+++|+.++.+++.++++.-. +...|.. .+...... ..... .+||||||+|
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~------~~~~~~~~~~~~~g~l~~~vl~iDEi~ 119 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM------IYNQHKGNFEVKKGPVFSNFILADEVN 119 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE------EEETTTTEEEEEECTTCSSEEEEETGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce------eecCCCCceEeccCcccccEEEEEccc
Confidence 35799999999999999999999999999888763110 0000000 00000000 00111 3799999999
Q ss_pred cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCceEEEeC
Q 019694 95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYWA 169 (337)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~d~~i~~ 169 (337)
.+.. .....|++.++... +.+.|.. .....++.||+|+|..+ .++++|++ ||+..+.+
T Consensus 120 ~~~~-------------~~~~~Ll~~l~~~~-~~~~g~~-~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i 182 (331)
T 2r44_A 120 RSPA-------------KVQSALLECMQEKQ-VTIGDTT-YPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHL 182 (331)
T ss_dssp GSCH-------------HHHHHHHHHHHHSE-EEETTEE-EECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEEC
T ss_pred cCCH-------------HHHHHHHHHHhcCc-eeeCCEE-EECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEc
Confidence 7532 12233444444211 1112211 11234677888888443 38999997 88877777
Q ss_pred --CCHHHHHHHHHHhccC
Q 019694 170 --PTREDRIGVCKGIFRN 185 (337)
Q Consensus 170 --P~~~~R~~Il~~~~~~ 185 (337)
|+.+++.+|++.....
T Consensus 183 ~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 183 TYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCCHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhcccc
Confidence 9999999999888764
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=1.4e-12 Score=109.53 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
.+..|||+||||||||++|+++++.. +.+|+ ++++.+.+. ......|..| ..++|||||||.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 34569999999999999999999987 67888 988876554 1234556666 5689999999976
Q ss_pred cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
... .+..|+.++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 321 1233444443 223467899999974
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.35 E-value=2e-11 Score=116.28 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=98.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
.++..++|+||||||||+|++++|+.++.++...+++.+.. ...+...+.. .....|+||||++.+..
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~------~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS------LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH------ccCCCEEEEcchhhcCH
Confidence 45677999999999999999999999999887777654321 2223332221 23568999999997642
Q ss_pred cCCCCcccchhhHhHHHHHHhhhCCCcc-ccC-CCc---cccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694 99 RMGGTTQYTVNNQMVNATLMNIADNPTC-VQL-PGM---YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 171 (337)
Q Consensus 99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~-~g~---~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~ 171 (337)
+ +...|+..+..... +.+ .+. ........+.+|++||++..|++++++ ||...+.+ |+
T Consensus 117 --------~-----~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 --------A-----VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp --------H-----HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred --------H-----HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 11222222221100 000 000 000123457788899999999999987 78766666 99
Q ss_pred HHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694 172 REDRIGVCKGIFRND--NVADDDIVKLVDTFPG 202 (337)
Q Consensus 172 ~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g 202 (337)
.+++.+|++...... .++.+.+..++....|
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G 214 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG 214 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC
Confidence 999999998776543 4555555555554444
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=9e-12 Score=118.51 Aligned_cols=154 Identities=15% Similarity=0.227 Sum_probs=95.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh------CCCcEEecCCcccc----------C------CCCChHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELES----------G------NAGEPAKLIRQRYREA 76 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l------~~~~i~vs~s~l~~----------~------~~Ge~~~~ir~~f~~A 76 (337)
..+..++|+||||||||++++++++++ +..++.+++....+ . ..|.+. ...+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSI---AELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCH---HHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHH
Confidence 557789999999999999999999988 88888888653211 0 112222 2223333
Q ss_pred HHHHHh-cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC---CC
Q 019694 77 ADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---ST 152 (337)
Q Consensus 77 ~~~~~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~---~~ 152 (337)
.+.+.. ..|+||+|||+|.+....+ . .....|+..++ . ....++.+|++||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~----~-----~~l~~l~~~~~--------~----~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN----D-----DILYKLSRINS--------E----VNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC----S-----THHHHHHHHHH--------S----CCC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc----C-----HHHHHHhhchh--------h----cCCCeEEEEEEECCCChHhh
Confidence 223343 4599999999998764321 0 11223333333 1 134578999999987 46
Q ss_pred CcchhccCCCce-EEEeC--CCHHHHHHHHHHhcc----CCCCCHH---HHHHHhc
Q 019694 153 LYAPLIRDGRME-KFYWA--PTREDRIGVCKGIFR----NDNVADD---DIVKLVD 198 (337)
Q Consensus 153 ld~aLlR~gR~d-~~i~~--P~~~~R~~Il~~~~~----~~~l~~~---~la~l~~ 198 (337)
+++.+.+ ||. +.+.+ ++.++..+|+...+. ...++.+ .++..+.
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 7788877 442 35555 889999999887653 2345543 3444454
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=9.1e-12 Score=119.11 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=94.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccC----------------CCCChHHHHHHHHHHHHHHHH-
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK- 81 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~----------------~~Ge~~~~ir~~f~~A~~~~~- 81 (337)
.++|+||||||||++++++++.+ +..++.++++...+. ..|.+.. ..+......+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRD---EFLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHH---HHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHH---HHHHHHHHHHhh
Confidence 89999999999999999999998 667888886543210 0121211 22222222223
Q ss_pred hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC---CCCcchhc
Q 019694 82 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLI 158 (337)
Q Consensus 82 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~---~~ld~aLl 158 (337)
...|.||+|||+|.+ . ......|+.++++ . ......++.||++||++ +.+++.+.
T Consensus 123 ~~~~~vlilDE~~~l----~---------~~~~~~L~~~~~~--------~-~~~~~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL----A---------PDILSTFIRLGQE--------A-DKLGAFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGS----C---------HHHHHHHHHHTTC--------H-HHHSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECcccc----c---------hHHHHHHHHHHHh--------C-CCCCcCCEEEEEEECCchHHHHhCHHhh
Confidence 456899999999976 1 1222334444431 1 00012578999999998 67888887
Q ss_pred cCCCceE-EEeC--CCHHHHHHHHHHhccC----CCCCHH---HHHHHhc
Q 019694 159 RDGRMEK-FYWA--PTREDRIGVCKGIFRN----DNVADD---DIVKLVD 198 (337)
Q Consensus 159 R~gR~d~-~i~~--P~~~~R~~Il~~~~~~----~~l~~~---~la~l~~ 198 (337)
+ ||.. .+.+ ++.++..+++...+.. ..++.+ .+++.+.
T Consensus 181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 6 5553 4566 7888899998776643 356664 4455553
No 72
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=6.6e-12 Score=119.67 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=99.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 73 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f 73 (337)
-+.|.++||+||||+|||++|+++|+.+... ++.+...+ +-...+...++++.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence 3678899999999999999999999988643 22222210 00011234566666
Q ss_pred HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 153 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l 153 (337)
+.+...-..+...|++|||+|.+... . ...|+..++ ++..++.+|++||+++.+
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~~------------a-~naLLk~lE-------------ep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTDA------------A-ANALLKTLE-------------EPPAETWFFLATREPERL 151 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCHH------------H-HHHHHHHHT-------------SCCTTEEEEEEESCGGGS
T ss_pred HHHhhccccCCcEEEEECchhhcCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEeCChHhC
Confidence 66511111346789999999986321 1 123444555 345678899999999999
Q ss_pred cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhh
Q 019694 154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSI 205 (337)
Q Consensus 154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl 205 (337)
++++++ |+.. +.+ |+.++..+++.... .++.+ .+++++.|-.+..+
T Consensus 152 ~~ti~S--Rc~~-~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 152 LATLRS--RCRL-HYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp CHHHHT--TSEE-EECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHhh--ccee-eeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHH
Confidence 999987 5543 555 89999999988776 45554 34555555444443
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.32 E-value=4.7e-12 Score=120.75 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=91.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 74 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~ 74 (337)
+.|..+||+||||||||++|+++|+.++.. ++.++.+. . .....++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 456789999999999999999999988642 22232221 0 11122445555
Q ss_pred HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694 75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 154 (337)
Q Consensus 75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld 154 (337)
.+......+.+.||+|||+|.+... ....|+..++ ....++.+|++||++..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 4411001346789999999976311 1223444444 2345688999999999999
Q ss_pred chhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHH
Q 019694 155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKL 196 (337)
Q Consensus 155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l 196 (337)
+++.+ |+ ..+.+ |+.++..++++.++...+ ++.+.+..+
T Consensus 164 ~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l 206 (373)
T 1jr3_A 164 VTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 (373)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred HHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99886 45 34555 899999999988876544 444433333
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.32 E-value=1.3e-12 Score=119.75 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccC-----CCCChHHHHHHHHHHHH----HHHHhcCceE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-----NAGEPAKLIRQRYREAA----DIIKKGKMCC 87 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~-----~~Ge~~~~ir~~f~~A~----~~~~~~~p~I 87 (337)
.+..|||+||||||||++|+++++.+. .+++.++++.+... ..|.. ...|..+. ..+.....++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~----~~~~~g~~~~~~~~l~~a~~~~ 103 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE----AGAFTGAQKRHPGRFERADGGT 103 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-------------CCCCHHHHTTTSE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCc----ccccccccccccchhhhcCCcE
Confidence 356799999999999999999999875 67999998865211 01110 00111110 1112235689
Q ss_pred EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhccC
Q 019694 88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIRD 160 (337)
Q Consensus 88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLlR~ 160 (337)
|||||||.+.. .....|+.+++........+. .....++.||+|||.. ..+.++|..
T Consensus 104 l~lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~- 167 (265)
T 2bjv_A 104 LFLDELATAPM-------------MVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLLD- 167 (265)
T ss_dssp EEEESGGGSCH-------------HHHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH-
T ss_pred EEEechHhcCH-------------HHHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHHH-
Confidence 99999997642 122344555553221111111 1123568899999984 246778876
Q ss_pred CCce-EEEeCCCHHHH
Q 019694 161 GRME-KFYWAPTREDR 175 (337)
Q Consensus 161 gR~d-~~i~~P~~~~R 175 (337)
||. ..+.+|...+|
T Consensus 168 -Rl~~~~i~lp~L~~R 182 (265)
T 2bjv_A 168 -ALAFDVVQLPPLRER 182 (265)
T ss_dssp -HHCSEEEECCCGGGC
T ss_pred -hhcCcEEeCCChhhh
Confidence 775 45667777655
No 75
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=6.7e-12 Score=117.21 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=90.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHH--HHhcCceEEEeccccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 95 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~--~~~~~p~Il~IDEiD~ 95 (337)
.+||+||||||||++|+++++++. ..++.+++++..+ ...++......... .....+.||+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 499999999999999999999863 2356666553211 11222222222100 0125689999999997
Q ss_pred ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694 96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
+... ....|+.+++ .....+.+|+|||.++.+++++.+ |+. .+.+ |+.+
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ 172 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDE 172 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHH
Confidence 6321 1233444444 223567899999999999999987 565 4555 8889
Q ss_pred HHHHHHHHhccCCC--CCHHHHHHHh
Q 019694 174 DRIGVCKGIFRNDN--VADDDIVKLV 197 (337)
Q Consensus 174 ~R~~Il~~~~~~~~--l~~~~la~l~ 197 (337)
+..+++..++...+ ++.+.+..+.
T Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~l~ 198 (327)
T 1iqp_A 173 DIAKRLRYIAENEGLELTEEGLQAIL 198 (327)
T ss_dssp HHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999988876655 4554444333
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.30 E-value=7.1e-12 Score=118.18 Aligned_cols=159 Identities=14% Similarity=0.199 Sum_probs=92.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc-----C--------CCCChHHHHHHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----G--------NAGEPAKLIRQRYREAADIIKK 82 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~-----~--------~~Ge~~~~ir~~f~~A~~~~~~ 82 (337)
+.+..|||+||||||||++|+++++.. +.+|+.++++.+.. . +.|... .....|..|
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------ 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------ 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH------
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc------
Confidence 446779999999999999999999965 57899998876532 1 111110 112344445
Q ss_pred cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcc
Q 019694 83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYA 155 (337)
Q Consensus 83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~ 155 (337)
..++|||||||.+.. .....|+.+++......+.+. .....++.||+|||.. ..+++
T Consensus 96 -~~g~L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~ 159 (304)
T 1ojl_A 96 -DGGTLFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQ 159 (304)
T ss_dssp -TTSEEEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCH
T ss_pred -CCCEEEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHH
Confidence 568999999997632 123445566663322222221 1224568999999985 23444
Q ss_pred hhccCCCce-EEEeCCCHHHHHH----HHHHhcc---------CCCCCHHHHHHHhcC-CCc
Q 019694 156 PLIRDGRME-KFYWAPTREDRIG----VCKGIFR---------NDNVADDDIVKLVDT-FPG 202 (337)
Q Consensus 156 aLlR~gR~d-~~i~~P~~~~R~~----Il~~~~~---------~~~l~~~~la~l~~g-f~g 202 (337)
+|.. ||. ..+.+|...+|.+ ++..++. ...++.+.+..+... |+|
T Consensus 160 ~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpG 219 (304)
T 1ojl_A 160 DLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPG 219 (304)
T ss_dssp HHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSS
T ss_pred HHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCC
Confidence 4443 453 3355677665532 3433321 124566666655543 354
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=4.6e-13 Score=137.52 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=86.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe----cCCccccCCC-----CChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNA-----GEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v----s~s~l~~~~~-----Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
.|||+||||||||++|+++|+.++..++.. +.+.+..... |.. ..-...+..| ..+|||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~G~l~~A-------~~gil~IDEi 400 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEY-YLEAGALVLA-------DGGIAVIDEI 400 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSC-SEEECHHHHH-------SSSEECCTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccc-cccCCeeEec-------CCCcEEeehh
Confidence 799999999999999999999987654432 2222221111 110 0000123333 5689999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCcccc-CCCccccCCCCCceEEEEeCCCC-------------CCcchhcc
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ-LPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 159 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~-~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR 159 (337)
|++.. .....|++.+++.+... -.|. ......++.||+|||... .|++||++
T Consensus 401 d~l~~-------------~~q~~Ll~~le~~~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 401 DKMRD-------------EDRVAIHEAMEQQTVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp TCCCS-------------HHHHHHHHHHHSSSEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred hhCCH-------------hHhhhhHHHHhCCEEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 98632 12345566666332110 1111 112346789999999886 89999998
Q ss_pred CCCceEEEeC---CCHHHHHHHHHHhccC
Q 019694 160 DGRMEKFYWA---PTREDRIGVCKGIFRN 185 (337)
Q Consensus 160 ~gR~d~~i~~---P~~~~R~~Il~~~~~~ 185 (337)
|||..+.+ |+.+ ...|.+.++..
T Consensus 467 --RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 --RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 99865554 7777 77787776654
No 78
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=3.6e-12 Score=147.99 Aligned_cols=143 Identities=12% Similarity=0.137 Sum_probs=91.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHH-HHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-----------hcCceE
Q 019694 20 VPLILGIWGGKGQGKSFQCELV-FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCC 87 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~ai-A~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~I 87 (337)
..++|||+||||||||++|+.+ ++..+..++.++.+... +...+...+....+..+ .++++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 4579999999999999999554 44446677777766432 22334444443211000 234579
Q ss_pred EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-----CCCCceEEEEeCCCC-----CCcchh
Q 019694 88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS-----TLYAPL 157 (337)
Q Consensus 88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-----~~~~V~vI~TTN~~~-----~ld~aL 157 (337)
|||||||.-...+.| + +....+|.++++. .|.|... ...++.+|+|||.+. .|+++|
T Consensus 1340 lFiDEinmp~~d~yg-~------q~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG-S------QNVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEETTTCSCCCSSS-C------CHHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccccccccccC-c------hhHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 999999964433321 2 2233444444442 2333321 125689999999994 899999
Q ss_pred ccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694 158 IRDGRMEKFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 158 lR~gR~d~~i~~--P~~~~R~~Il~~~~~ 184 (337)
+| || ..+++ |+.+++..|+..++.
T Consensus 1407 lR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1407 TR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred hh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 99 67 55666 999999999777663
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.28 E-value=8.8e-13 Score=110.57 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~ 99 (337)
.+..|||+||||||||++|+++++..+ +++.++++.+...+ ....|..| ..++|||||||.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN 90 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH
Confidence 355699999999999999999999888 89989888654332 34555555 5689999999976321
Q ss_pred CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694 100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150 (337)
Q Consensus 100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~ 150 (337)
....|+.+++. ....++.+|+|||..
T Consensus 91 -------------~q~~Ll~~l~~------------~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 -------------IQTGITFIIGK------------AERCRVRVIASCSYA 116 (143)
T ss_dssp -------------HHHHHHHHHHH------------HTTTTCEEEEEEEEC
T ss_pred -------------HHHHHHHHHHh------------CCCCCEEEEEecCCC
Confidence 12334444441 114567899999965
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.28 E-value=4.8e-12 Score=127.31 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCC-----ccccCCCCChHHHHHHHHHHHHHHHHhc---CceEEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-----ELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLMI 90 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s-----~l~~~~~Ge~~~~ir~~f~~A~~~~~~~---~p~Il~I 90 (337)
...|||+||||||||++|+++|+.++. +|..++.. ++.+.+.+..... ...|..+ ..+ .++||||
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~----~~g~l~~~~IL~I 115 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERL----TSGYLPEAEIVFL 115 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBC----CTTSGGGCSEEEE
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhh----hccCCCcceeeeH
Confidence 358999999999999999999998854 33333332 2222222221100 1222222 222 4679999
Q ss_pred cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC---CcchhccCCCceEEE
Q 019694 91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFY 167 (337)
Q Consensus 91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~---ld~aLlR~gR~d~~i 167 (337)
|||+.+.. .+...|+.+++... +...|.. ...+..++|+|||.... +.+++++ ||...+
T Consensus 116 DEI~r~~~-------------~~q~~LL~~lee~~-v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i 177 (500)
T 3nbx_X 116 DEIWKAGP-------------AILNTLLTAINERQ-FRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRL 177 (500)
T ss_dssp ESGGGCCH-------------HHHHHHHHHHHSSE-EECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEE
T ss_pred HhHhhhcH-------------HHHHHHHHHHHHHh-ccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHH
Confidence 99975321 23445666665322 2223321 22233357889986332 3348887 888888
Q ss_pred eC--CCH-HHHHHHHHHhc
Q 019694 168 WA--PTR-EDRIGVCKGIF 183 (337)
Q Consensus 168 ~~--P~~-~~R~~Il~~~~ 183 (337)
++ |+. +++.+|++...
T Consensus 178 ~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 178 WLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ECCSCCCHHHHHHHHTCCC
T ss_pred HHHHhhhhhhHHHHHhccc
Confidence 88 665 77889987665
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=5e-11 Score=113.21 Aligned_cols=135 Identities=16% Similarity=0.350 Sum_probs=82.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------cEEecCCccccCCCCC-hHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGELESGNAGE-PAKL 68 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------------~i~vs~s~l~~~~~Ge-~~~~ 68 (337)
+.|. ++|+||||+|||++++++++++..+ ++.++.+. .+. ....
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 108 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIV 108 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCCcchHH
Confidence 4455 9999999999999999999975211 12222211 111 1113
Q ss_pred HHHHHHHHHHHHH----------hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCC
Q 019694 69 IRQRYREAADIIK----------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 138 (337)
Q Consensus 69 ir~~f~~A~~~~~----------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~ 138 (337)
+++....+..... ...|.||+|||+|.+.. .....|+..++ ...
T Consensus 109 ~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-------------~~~ 162 (354)
T 1sxj_E 109 IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-------------KYS 162 (354)
T ss_dssp HHHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH-------------HST
T ss_pred HHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH-------------hhc
Confidence 4444444311000 23678999999997421 11223334444 123
Q ss_pred CCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694 139 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 188 (337)
Q Consensus 139 ~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l 188 (337)
.++.+|++||+++.+.+++.+ |+ ..+.+ |+.++..++++.++...++
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 457899999999999999986 55 44555 8999999999888765443
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=2.8e-11 Score=114.41 Aligned_cols=160 Identities=8% Similarity=-0.012 Sum_probs=100.0
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh------CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 79 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~ 79 (337)
+..+++.++... +..+|||||||+|||++|+++|+.+ ...++.++++. .. .+...+|++.+.+...
T Consensus 6 ~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 6 LETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYS 77 (305)
T ss_dssp HHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhc
Confidence 344445544433 4589999999999999999999874 33566666531 11 2334577777776111
Q ss_pred HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694 80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 159 (337)
Q Consensus 80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR 159 (337)
-..+...|+||||+|.+... . ...|+..++ ++.+.+.+|++||.++.|.++++.
T Consensus 78 p~~~~~kvviIdead~lt~~------------a-~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S 131 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQQ------------A-ANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS 131 (305)
T ss_dssp CSSSSSEEEEETTGGGBCHH------------H-HHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT
T ss_pred cccCCceEEEeccHHHhCHH------------H-HHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc
Confidence 01234579999999986321 1 223444444 445677888889999999999987
Q ss_pred CCCceEEEeCCCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhH
Q 019694 160 DGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 206 (337)
Q Consensus 160 ~gR~d~~i~~P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~ 206 (337)
| -..+..|+.++..+++...+ +++.+.+ .+..|-.+..+.
T Consensus 132 --R-~~~f~~l~~~~i~~~L~~~~---~i~~~~~-~~~~g~~~~al~ 171 (305)
T 2gno_A 132 --R-VFRVVVNVPKEFRDLVKEKI---GDLWEEL-PLLERDFKTALE 171 (305)
T ss_dssp --T-SEEEECCCCHHHHHHHHHHH---TTHHHHC-GGGGTCHHHHHH
T ss_pred --e-eEeCCCCCHHHHHHHHHHHh---CCCHHHH-HHHCCCHHHHHH
Confidence 4 22222388888888887776 3554433 344444444433
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.4e-10 Score=110.24 Aligned_cols=137 Identities=13% Similarity=0.189 Sum_probs=87.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC-----CcEEecCCccccCCCCChHHHHHHHHHHHHHHHH--hcCceEEEec
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMIN 91 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~-----~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~--~~~p~Il~ID 91 (337)
+.|. +||+||||||||++++++|+.+.. .++.++.++. . ....+++......+... ...+.|++||
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~--~~~~ir~~i~~~~~~~~~~~~~~~viiiD 117 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----R--GIDVVRNQIKDFASTRQIFSKGFKLIILD 117 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----C--SHHHHHTHHHHHHHBCCSSSCSCEEEEET
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----c--cHHHHHHHHHHHHhhcccCCCCceEEEEe
Confidence 3454 999999999999999999998632 3455555432 1 12344444433311000 1247899999
Q ss_pred ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--
Q 019694 92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-- 169 (337)
Q Consensus 92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-- 169 (337)
|+|.+... ....|+..++ .....+.+|++||.+..+.++++. |+.. +.+
T Consensus 118 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~-~~~~~ 168 (340)
T 1sxj_C 118 EADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTR-FRFQP 168 (340)
T ss_dssp TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEE-EECCC
T ss_pred CCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hcee-EeccC
Confidence 99976321 1223444444 223456788999999999999987 6654 444
Q ss_pred CCHHHHHHHHHHhccCC--CCCHH
Q 019694 170 PTREDRIGVCKGIFRND--NVADD 191 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~~--~l~~~ 191 (337)
++.++..+++...+... +++.+
T Consensus 169 l~~~~~~~~l~~~~~~~~~~i~~~ 192 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEKLKLSPN 192 (340)
T ss_dssp CCHHHHHHHHHHHHHTTTCCBCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHH
Confidence 78888888888877544 44543
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.11 E-value=9.6e-11 Score=131.36 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCcE--EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc------------cCCCCC----hHHHHHHHHHHHHH
Q 019694 20 VPLI--LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE------------SGNAGE----PAKLIRQRYREAAD 78 (337)
Q Consensus 20 ~p~g--iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~------------~~~~Ge----~~~~ir~~f~~A~~ 78 (337)
+|+| +|||||||||||+||++++.+. |-+.+.++..+.. ++|+++ +++.++.+|..|
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a-- 1156 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA-- 1156 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH--
Confidence 4555 9999999999999999998876 4455555555533 677888 899999999888
Q ss_pred HHHhcCceEEEecccccccccCC---C--CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694 79 IIKKGKMCCLMINDLDAGAGRMG---G--TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 151 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l~~~~~---~--~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~ 151 (337)
+...||+||+|++|+++++++ . ..+.....+.++++|.++ + +. ....+|+|| +||+..
T Consensus 1157 --r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~-~--------~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1157 --RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL-A--------GN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp --HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH-H--------HH---HHHTTCEEE-EEECEE
T ss_pred --HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHH-H--------hh---hccCCeEEE-Eecccc
Confidence 999999999999999997732 1 112234445566666433 2 22 445677666 777643
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=3.4e-10 Score=97.60 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=56.1
Q ss_pred hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccCCCCChHHHHHHHHHHHH--
Q 019694 4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-- 77 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-- 77 (337)
-+...++.|.....+....+++|+||||||||+|+++++..+ |..++.++..++... +...+....
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~ 92 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR--------LKHLMDEGKDT 92 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH--------HHHHHHHTCCS
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHhcCchHH
Confidence 345666777776666678899999999999999999999876 556666665544321 111111100
Q ss_pred H-HHHhcCceEEEecccccc
Q 019694 78 D-IIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 78 ~-~~~~~~p~Il~IDEiD~l 96 (337)
. +..-..|.+|+|||++..
T Consensus 93 ~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 93 KFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHhcCCCEEEEeCCCCC
Confidence 0 112347899999999753
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.05 E-value=1.9e-10 Score=109.29 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--cEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
.|+.....++|+||||||||+||.++|.+.|.. |+.....+..+.+..+.+..++.+++.. .+.. +|+||+|
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l----~~~~--LLVIDsI 191 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQHR--VIVIDSL 191 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HHCS--EEEEECC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH----hhCC--EEEEecc
Confidence 455666778999999999999999999876544 5555224444444444444444444333 4444 9999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 157 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL 157 (337)
+.+.....+........+.+.+.|..+.. . ....++.+|+++| +...++++
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 99864433211111123334444433322 1 1224567888888 56677665
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.94 E-value=1.5e-09 Score=94.95 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=49.3
Q ss_pred HHhhhhcCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHh
Q 019694 8 ITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKK 82 (337)
Q Consensus 8 i~k~~l~~~-g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~ 82 (337)
.++.++... ....|++++|+||||||||++|+++++++ +.+++.++.+++........ ...+...+... .
T Consensus 40 ~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 114 (202)
T 2w58_A 40 FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI----K- 114 (202)
T ss_dssp HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHH----H-
T ss_pred HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHh----c-
Confidence 344454422 22235899999999999999999999987 56777777665432110000 00001112211 2
Q ss_pred cCceEEEecccccc
Q 019694 83 GKMCCLMINDLDAG 96 (337)
Q Consensus 83 ~~p~Il~IDEiD~l 96 (337)
.+.+|+|||++..
T Consensus 115 -~~~~lilDei~~~ 127 (202)
T 2w58_A 115 -KVPVLMLDDLGAE 127 (202)
T ss_dssp -HSSEEEEEEECCC
T ss_pred -CCCEEEEcCCCCC
Confidence 3469999999764
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.93 E-value=2.5e-09 Score=102.97 Aligned_cols=157 Identities=9% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCcEEEE--EcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC----------------CCCChHHHHHHH
Q 019694 20 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 72 (337)
Q Consensus 20 ~p~giLL--~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~----------------~~Ge~~~~ir~~ 72 (337)
.+..++| +||||+|||++++.+++++ +..++.+++....+. ..|.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999876 456677765321100 0111111 22
Q ss_pred HHHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCC--CCceEEEEeCC
Q 019694 73 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGND 149 (337)
Q Consensus 73 f~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~--~~V~vI~TTN~ 149 (337)
+......+. ...|.||+|||+|.+..... .. ...+ ..|+..+.+ . .... .++.+|+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~-----~~~l-~~l~~~~~~--------~--~~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPR-IA-----AEDL-YTLLRVHEE--------I--PSRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SC-----HHHH-HHHHTHHHH--------S--CCTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cc-----hHHH-HHHHHHHHh--------c--ccCCCCceEEEEEEecc
Confidence 222222222 46799999999998754311 00 1111 122222220 0 0112 67889999987
Q ss_pred CC---CCc---chhccCCCceEEEeC--CCHHHHHHHHHHhcc----CCCCCH---HHHHHHhc
Q 019694 150 FS---TLY---APLIRDGRMEKFYWA--PTREDRIGVCKGIFR----NDNVAD---DDIVKLVD 198 (337)
Q Consensus 150 ~~---~ld---~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~----~~~l~~---~~la~l~~ 198 (337)
++ .++ +.+.+ |+...+.+ ++.++..+++...+. ...++. ..+.+.+.
T Consensus 189 ~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 189 VRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp THHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred ccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 65 233 55555 33333666 788899999865543 234555 34555566
No 89
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.88 E-value=3.7e-09 Score=102.74 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 95 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~ 95 (337)
.+++.+..++|+||||+|||||+++++..++..++.+.... .. ..|... ...+..++|+||++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~-----~~~~lg----~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR-----LNFELG----VAIDQFLVVFEDVKG 227 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT-----HHHHHG----GGTTCSCEEETTCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh-----HHHHHH----HhcchhHHHHHHHHH
Confidence 36777889999999999999999999998876655433221 11 011111 223556789999998
Q ss_pred ccc-cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCCCH
Q 019694 96 GAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 172 (337)
Q Consensus 96 l~~-~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P~~ 172 (337)
+.. .++-....... ....+.+.++ +.+.|+++||+++.+ ++++||||++..++.+..
T Consensus 228 ~~~~~r~l~~~~~~~---~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~ 285 (377)
T 1svm_A 228 TGGESRDLPSGQGIN---NLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPK 285 (377)
T ss_dssp STTTTTTCCCCSHHH---HHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCCH
T ss_pred HHHHHhhccccCcch---HHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhcH
Confidence 774 22101101000 1112222333 236789999999999 789999999998888553
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.85 E-value=1.3e-09 Score=102.92 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHh
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKK 82 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~ 82 (337)
.++.|+....-..+.+++||||||||||+||+++|+++. .+++.++.+++.....+.. ...+...+.. -
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~------~ 212 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA------V 212 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH------H
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH------h
Confidence 445555532222468999999999999999999998654 6777777665433211100 0001111111 1
Q ss_pred cCceEEEecccccc
Q 019694 83 GKMCCLMINDLDAG 96 (337)
Q Consensus 83 ~~p~Il~IDEiD~l 96 (337)
....+||||||+..
T Consensus 213 ~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 213 KNVPVLILDDIGAE 226 (308)
T ss_dssp HTSSEEEEETCCC-
T ss_pred cCCCEEEEcCCCCC
Confidence 24569999999653
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.85 E-value=2.5e-09 Score=95.49 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=62.4
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCc
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p 85 (337)
++.++.|+. +++...++|+|||||||||++|.++|+.+.-.++....+. + .. .+. .-...
T Consensus 45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s----~f------~l~------~l~~~ 104 (212)
T 1tue_A 45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--S----HF------WLE------PLTDT 104 (212)
T ss_dssp HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--S----CG------GGG------GGTTC
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--c----hh------hhc------ccCCC
Confidence 455666665 3444578999999999999999999999865432211100 0 00 001 11123
Q ss_pred eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCC
Q 019694 86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDF 150 (337)
Q Consensus 86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~ 150 (337)
.||+|||+|.- ..+.+...+.+++|.- .+.++-.+.. ......|+|+|||..
T Consensus 105 kIiiLDEad~~------------~~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~ 157 (212)
T 1tue_A 105 KVAMLDDATTT------------CWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIH 157 (212)
T ss_dssp SSEEEEEECHH------------HHHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSC
T ss_pred CEEEEECCCch------------hHHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCC
Confidence 49999999831 1223444556666621 1111111111 122356999999973
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=2.7e-09 Score=90.19 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l 96 (337)
....++|+||+|+|||+|+++++..+ |...+.++..++... + ...+|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~----~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------D----AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------G----GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------H----HHhCCCEEEEeCcccc
Confidence 45789999999999999999999987 667788887766543 1 1236889999999864
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.77 E-value=1.8e-08 Score=89.44 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH--------hC-CCcEEecCCccccCCC-------------CChHHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA-------------GEPAKLIRQRYREAA 77 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~--------l~-~~~i~vs~s~l~~~~~-------------Ge~~~~ir~~f~~A~ 77 (337)
.+...|++|+||+|||++|...+.. .| .+++..+..+|..... ++.. ..+..+..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~- 81 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQL-SAHDMYEWI- 81 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCE-EGGGHHHHT-
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccc-cHHHHHHHh-
Confidence 4568899999999999999886443 34 5666666555533221 1100 001122211
Q ss_pred HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694 78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 157 (337)
Q Consensus 78 ~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL 157 (337)
....+..+||+|||++.+...+...... .+ .|.++.. .....+-||++|+.++.|+.++
T Consensus 82 -~~~~~~~~vliIDEAq~l~~~~~~~~e~---~r----ll~~l~~-------------~r~~~~~iil~tq~~~~l~~~l 140 (199)
T 2r2a_A 82 -KKPENIGSIVIVDEAQDVWPARSAGSKI---PE----NVQWLNT-------------HRHQGIDIFVLTQGPKLLDQNL 140 (199)
T ss_dssp -TSGGGTTCEEEETTGGGTSBCCCTTCCC---CH----HHHGGGG-------------TTTTTCEEEEEESCGGGBCHHH
T ss_pred -hccccCceEEEEEChhhhccCccccchh---HH----HHHHHHh-------------cCcCCeEEEEECCCHHHHhHHH
Confidence 0124568999999999987544211111 11 2222211 2234567899999999999997
Q ss_pred ccCCCceEEEeC
Q 019694 158 IRDGRMEKFYWA 169 (337)
Q Consensus 158 lR~gR~d~~i~~ 169 (337)
.+ |++..+.+
T Consensus 141 r~--ri~~~~~l 150 (199)
T 2r2a_A 141 RT--LVRKHYHI 150 (199)
T ss_dssp HT--TEEEEEEE
T ss_pred HH--HhheEEEE
Confidence 64 99999888
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.74 E-value=2.6e-08 Score=102.25 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
..++|+||||||||++|+++|..+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 57999999999999999999998754
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.60 E-value=4e-08 Score=111.61 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc----cCCCC------------ChHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAG------------EPAKLIRQRYREA 76 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~----~~~~G------------e~~~~ir~~f~~A 76 (337)
.|++.+++++|+||||||||+||.+++.+. |.....++..+.. ....| ..+..++.++..+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 468899999999999999999999997765 4455555554321 11112 3344555455444
Q ss_pred HHHHHhcCceEEEecccccccccC---C--CCcccchhhHhHHHHHHhhhC
Q 019694 77 ADIIKKGKMCCLMINDLDAGAGRM---G--GTTQYTVNNQMVNATLMNIAD 122 (337)
Q Consensus 77 ~~~~~~~~p~Il~IDEiD~l~~~~---~--~~~~~~~~~~~v~~~Ll~lld 122 (337)
+..+|++|||||++.+.+.. + +.+..+...+.+.+.|.++..
T Consensus 1502 ----r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ----HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ----hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 88999999999999888642 1 111222234455555555544
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.60 E-value=2.9e-07 Score=86.14 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=86.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc------------c---CCCCC---------------------h
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P 65 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~------------~---~~~Ge---------------------~ 65 (337)
..++|+||+|+|||+|++.++++.+ ++.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999886 4444432211 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEE
Q 019694 66 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145 (337)
Q Consensus 66 ~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~ 145 (337)
...+.+++....+.+....|.+|+|||++.+..... . ....+...|..+++ ...++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~----~~~~~~~~L~~~~~--------------~~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--R----GGKELLALFAYAYD--------------SLPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--T----TTHHHHHHHHHHHH--------------HCTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--c----chhhHHHHHHHHHH--------------hcCCeEEEE
Confidence 011233333332233333499999999998753100 0 01112223333333 013667788
Q ss_pred EeCCCC---------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCH---HHHHHHhcCCCc
Q 019694 146 TGNDFS---------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VAD---DDIVKLVDTFPG 202 (337)
Q Consensus 146 TTN~~~---------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~---~~la~l~~gf~g 202 (337)
|+.... ....++ .||....+.+ .+.++-.+++...+...+ ++. ..+...+.|++.
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred ECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 776432 112223 2466666777 688888888887765443 444 345566777664
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.59 E-value=2e-07 Score=108.91 Aligned_cols=141 Identities=9% Similarity=0.053 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~ 99 (337)
.-+|+++.||||||||++++++|+.+|.+++.+++++-.+ ...+...|..+ . ...+.++|||++.+-..
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~----~-~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGI----T-QIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHH----H-HHTCEEEEETTTSSCHH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHH----H-hcCCEeeehhhhhcChH
Confidence 4578999999999999999999999999999999986433 34445566655 2 22479999999875321
Q ss_pred CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCHH
Q 019694 100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTRE 173 (337)
Q Consensus 100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~~ 173 (337)
--.+..+.+...+-.+.+....+...|.. ....+...|++|.| ....||++|.+ ||- .+.+ |+.+
T Consensus 713 -----vLs~l~~~l~~i~~al~~~~~~i~~~g~~-i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr-~v~m~~Pd~~ 783 (2695)
T 4akg_A 713 -----VLSAVSANIQQIQNGLQVGKSHITLLEEE-TPLSPHTAVFITLNPGYNGRSELPENLKK--SFR-EFSMKSPQSG 783 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSEEECSSSE-EECCTTCEEEEEECCCSSSSCCCCHHHHT--TEE-EEECCCCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCcEEeeCCcE-EecCCCceEEEEeCCCccCcccccHHHHh--heE-EEEeeCCCHH
Confidence 11112222222222222323233333321 12345667889999 66789999987 553 4555 9999
Q ss_pred HHHHHHH
Q 019694 174 DRIGVCK 180 (337)
Q Consensus 174 ~R~~Il~ 180 (337)
...+|+.
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888853
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.55 E-value=9.5e-07 Score=82.64 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=87.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-----c---------------------------CCCC------
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-----S---------------------------GNAG------ 63 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-----~---------------------------~~~G------ 63 (337)
..++|+||+|+|||+|++.++++++..++.+++.... + ...|
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4899999999999999999999987777777655321 0 0000
Q ss_pred -----C---hHHHHHHHHHHHHHHHHhc--CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc
Q 019694 64 -----E---PAKLIRQRYREAADIIKKG--KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 133 (337)
Q Consensus 64 -----e---~~~~ir~~f~~A~~~~~~~--~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~ 133 (337)
. ....+..++... ... .|.+|+|||++.+....+ .. +...|..+.+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~vlvlDe~~~~~~~~~----~~-----~~~~l~~~~~----------- 166 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESF----EQASKDNVIIVLDEAQELVKLRG----VN-----LLPALAYAYD----------- 166 (357)
T ss_dssp SEEEC-----CCCHHHHHHHH----HHTCSSCEEEEEETGGGGGGCTT----CC-----CHHHHHHHHH-----------
T ss_pred EEEeccCCcchhhHHHHHHHH----HhcCCCCeEEEEECHHHhhccCc----hh-----HHHHHHHHHH-----------
Confidence 0 001122222222 221 499999999998754211 00 1122222222
Q ss_pred ccCCCCCceEEEEeCCCCCC---------cchhccCCCceEEEeC--CCHHHHHHHHHHhccCC--CC-CHHHHHHHhcC
Q 019694 134 NKEENPRVPIIVTGNDFSTL---------YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND--NV-ADDDIVKLVDT 199 (337)
Q Consensus 134 ~~~~~~~V~vI~TTN~~~~l---------d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l-~~~~la~l~~g 199 (337)
...++.+|+|++....+ ..++ .||+...+.+ .+.++..+++...+... .. ....+...+.|
T Consensus 167 ---~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G 241 (357)
T 2fna_A 167 ---NLKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGG 241 (357)
T ss_dssp ---HCTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCS
T ss_pred ---cCCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCC
Confidence 01356788888753211 1222 3466556666 78888888887765321 22 23677788888
Q ss_pred CCch
Q 019694 200 FPGQ 203 (337)
Q Consensus 200 f~ga 203 (337)
++..
T Consensus 242 ~P~~ 245 (357)
T 2fna_A 242 IPGW 245 (357)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8764
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.51 E-value=3.3e-07 Score=88.98 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcccc-------------CCCCChHHHHHHHHHHHHHHHHhcC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELES-------------GNAGEPAKLIRQRYREAADIIKKGK 84 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~-------------~~~Ge~~~~ir~~f~~A~~~~~~~~ 84 (337)
...|||+|++|||||++|+++..... .+|+.++++.+-. .+.|.... -...|..| .
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a-------~ 231 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA-------D 231 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT-------T
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC-------C
Confidence 34479999999999999999988764 5899999886522 11121100 11344444 5
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 164 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d 164 (337)
..+||||||+.+.. .++..|+.+++..+...+++. .....++.||+|||..- ..+.+.|+|.
T Consensus 232 ~gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~l---~~~~~~g~fr 293 (387)
T 1ny5_A 232 GGTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRNI---KELVKEGKFR 293 (387)
T ss_dssp TSEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSCH---HHHHHTTSSC
T ss_pred CcEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCCH---HHHHHcCCcc
Confidence 67999999987632 233445555553222222222 12235678999999631 1233444442
Q ss_pred ---------EEEeCCCHHHH
Q 019694 165 ---------KFYWAPTREDR 175 (337)
Q Consensus 165 ---------~~i~~P~~~~R 175 (337)
..+.+|...+|
T Consensus 294 ~dl~~rl~~~~i~lPpLreR 313 (387)
T 1ny5_A 294 EDLYYRLGVIEIEIPPLRER 313 (387)
T ss_dssp HHHHHHHTTEEEECCCGGGC
T ss_pred HHHHHhhcCCeecCCcchhc
Confidence 34566776554
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.45 E-value=8.8e-08 Score=112.60 Aligned_cols=141 Identities=11% Similarity=0.176 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH------------hcCceE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCC 87 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~------------~~~p~I 87 (337)
.+.|||+||||||||+++......+ +.+++.++.+.- .+...+...++.-.+..+ .++..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~------Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSA------TTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTT------CCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCC------CCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3569999999999998876654444 556667776632 223444444432100000 144579
Q ss_pred EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-----CCCCCceEEEEeCCC-----CCCcchh
Q 019694 88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDF-----STLYAPL 157 (337)
Q Consensus 88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-----~~~~~V~vI~TTN~~-----~~ld~aL 157 (337)
+|||||+.-..... ..|....+|..++|.- |.|.. ....++.+|+|+|.+ ..|+++|
T Consensus 1378 lFiDDiNmp~~D~y-------GtQ~~ielLrqlld~~------g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY-------GTQRVITFIRQMVEKG------GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEETTTTCCCCCTT-------SCCHHHHHHHHHHHHS------EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccCCCCcccc-------ccccHHHHHHHHHHcC------CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 99999985322221 1223445566666632 23322 123678899999977 4699999
Q ss_pred ccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694 158 IRDGRMEKFYWA--PTREDRIGVCKGIF 183 (337)
Q Consensus 158 lR~gR~d~~i~~--P~~~~R~~Il~~~~ 183 (337)
+| ||-. +.+ |+.++...|+..++
T Consensus 1445 ~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1445 LR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp HT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred Hh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence 98 6666 444 99999999965543
No 101
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.41 E-value=1.1e-06 Score=81.18 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=30.3
Q ss_pred HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
...+++|++.. .++..+|+||||||||||++|++||+.++.
T Consensus 90 ~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 90 ASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33455555531 133468999999999999999999998765
No 102
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.25 E-value=2.7e-07 Score=91.69 Aligned_cols=123 Identities=17% Similarity=0.073 Sum_probs=71.0
Q ss_pred EEEEEcCCCchHHHHHHHH-HHHhCCCcEEe-cCCc-------cccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 23 ILGIWGGKGQGKSFQCELV-FAKMGINPIMM-SAGE-------LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~ai-A~~l~~~~i~v-s~s~-------l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
.|||.|+||| ||++|+++ ++-+....+.. .++. +.+. .| . ..-...+..| ...++|||||
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~-tG-~-~~~~G~l~LA-------dgGvl~lDEI 309 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED-RG-W-ALRAGAAVLA-------DGGILAVDHL 309 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES-SS-E-EEEECHHHHT-------TTSEEEEECC
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC-CC-c-ccCCCeeEEc-------CCCeeehHhh
Confidence 6999999999 99999999 66543322221 0000 1111 01 0 0000122233 4579999999
Q ss_pred ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----------CCcchhccCCC
Q 019694 94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----------TLYAPLIRDGR 162 (337)
Q Consensus 94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----------~ld~aLlR~gR 162 (337)
+.+-. .....|++.+...+ +.+.|. ....+..||+|+|... .|+++++- |
T Consensus 310 n~~~~-------------~~qsaLlEaMEe~~-VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--R 370 (506)
T 3f8t_A 310 EGAPE-------------PHRWALMEAMDKGT-VTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--H 370 (506)
T ss_dssp TTCCH-------------HHHHHHHHHHHHSE-EEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--T
T ss_pred hhCCH-------------HHHHHHHHHHhCCc-EEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--h
Confidence 87532 22345555555332 334443 4456789999999765 78899996 9
Q ss_pred ceEEEeC---CCHHHH
Q 019694 163 MEKFYWA---PTREDR 175 (337)
Q Consensus 163 ~d~~i~~---P~~~~R 175 (337)
||.++.+ |+.+.-
T Consensus 371 FDLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 371 FDLIAFLGVDPRPGEP 386 (506)
T ss_dssp CSEEEETTC-------
T ss_pred eeeEEEecCCCChhHh
Confidence 9998877 666553
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.25 E-value=3.9e-06 Score=73.47 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 56 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~ 56 (337)
.|++....++|+||||+|||+|++.++...+...+.++...
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 36777888999999999999999999886666777776543
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.25 E-value=1.6e-06 Score=83.58 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=75.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC--cEEecCCccccCC-------------CCChHHHHHHHHHHHHHHHHhcCce
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGN-------------AGEPAKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~--~i~vs~s~l~~~~-------------~Ge~~~~ir~~f~~A~~~~~~~~p~ 86 (337)
..+|++|++||||+++|+++....+.. |+.++++.+-... .|.... -...|..| ...
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a-------~~g 224 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA-------DQG 224 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT-------TTS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc-------CCC
Confidence 349999999999999999998877543 9999998753221 111000 01234444 456
Q ss_pred EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceE-
Q 019694 87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 165 (337)
Q Consensus 87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~- 165 (337)
.||||||+.+.. .++..|+.+++..+...+.+. .....++-+|+|||.. + ..+...|+|..
T Consensus 225 tlfldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~--l-~~~v~~g~fr~d 286 (368)
T 3dzd_A 225 TLFLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN--L-EEEIKKGNFRED 286 (368)
T ss_dssp EEEEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC--H-HHHHHTTSSCHH
T ss_pred eEEecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC--H-HHHHHcCCccHH
Confidence 899999987632 234455555553222222221 1123467899999952 2 22344555542
Q ss_pred --------EEeCCCHHHH
Q 019694 166 --------FYWAPTREDR 175 (337)
Q Consensus 166 --------~i~~P~~~~R 175 (337)
.+.+|...+|
T Consensus 287 L~~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 287 LYYRLSVFQIYLPPLRER 304 (368)
T ss_dssp HHHHHTSEEEECCCGGGS
T ss_pred HHHHhCCeEEeCCChhhc
Confidence 4666766655
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.18 E-value=2.2e-06 Score=72.93 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
|+.|+|.|+||+||||+++++++.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 5679999999999999999999999988887654
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=2.1e-05 Score=68.04 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINP 49 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~ 49 (337)
-+.|.||+|+|||||++.++..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999887543
No 107
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.06 E-value=1.1e-05 Score=77.69 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=55.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC----CCC--------hHHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGE--------PAKLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~----~Ge--------~~~~ir~~f~~A~~~~ 80 (337)
.|+++...++|+||||+|||+|+..++..+ +..++.++........ .|- ....+.+....+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 367777889999999999999999998764 5566666665422100 000 0011234444454555
Q ss_pred HhcCceEEEecccccccc
Q 019694 81 KKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~ 98 (337)
+...+.+++||.+-.+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 678899999999988764
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.06 E-value=2.2e-05 Score=92.80 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=89.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 100 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~ 100 (337)
-.|..+.||+|||||.+++.+|+.+|.+++.+++++-. ..+.+...|.-+ +. ..+..+|||++.+-..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~---~~--~GaW~cfDEfNrl~~~- 671 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGL---CQ--CGAWGCFDEFNRLEER- 671 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHH---HH--HTCEEEEETTTSSCHH-
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhH---hh--cCcEEEehhhhcCCHH-
Confidence 35678999999999999999999999999999998533 233444555544 22 3457889999875311
Q ss_pred CCCcccchhhHhHHHHHHhhhCCCccccCC-CccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC-CCHHH
Q 019694 101 GGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA-PTRED 174 (337)
Q Consensus 101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~-g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~-P~~~~ 174 (337)
--.+..+.+......+.+....+.+. |. .-.-.+...|++|.| ....||++|.. ||--+... |+.+.
T Consensus 672 ----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~-~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 672 ----ILSAVSQQIQTIQVALKENSKEVELLGGK-NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREM 744 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCeEEecCCC-EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHH
Confidence 11222222222222233434444444 32 112345678999999 45789999987 44333323 99999
Q ss_pred HHHHHH
Q 019694 175 RIGVCK 180 (337)
Q Consensus 175 R~~Il~ 180 (337)
..+|+-
T Consensus 745 i~ei~L 750 (3245)
T 3vkg_A 745 IAQVML 750 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888853
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.06 E-value=6e-06 Score=94.13 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 81 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~----~G--------e~~~~ir~~f~~A~~~~~ 81 (337)
|+.+...++|+|+||+|||+||..+|..+ +.+++.++..+..... .| .++..+.+++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 78889999999999999999999998876 3458888876544332 22 122335677777766666
Q ss_pred hcCceEEEecccccccc
Q 019694 82 KGKMCCLMINDLDAGAG 98 (337)
Q Consensus 82 ~~~p~Il~IDEiD~l~~ 98 (337)
...|++|+||.|..+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 78999999999999875
No 110
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.02 E-value=1.6e-05 Score=72.26 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHHhhhhc-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 6 VHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 6 ~~i~k~~l~-~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
..+.+.++. ......|..|+|.|+||+||||+++.++..++..++.+++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 334444443 2345678899999999999999999999999877777777665
No 111
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.01 E-value=3.5e-06 Score=80.82 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge~--------~~~ir~~f~~A~~~~ 80 (337)
.|++....++|+||||+|||+||..++... +...+.++...-.+. ..|-. ...+.+.+..+..++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367777889999999999999999987654 556666665432111 01100 001233444454455
Q ss_pred HhcCceEEEecccccccc
Q 019694 81 KKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~ 98 (337)
+...|.+|+||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 677899999999998874
No 112
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.99 E-value=2.3e-05 Score=75.60 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC----CCCh--------HHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~----~Ge~--------~~~ir~~f~~A~~~~ 80 (337)
.|++....++|+||||+|||+||..+|..+ +..++.++...-.+.. .|.. ...+.+++..+..++
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 367778889999999999999999887764 5566666654321110 1100 001233444444455
Q ss_pred HhcCceEEEecccccccc
Q 019694 81 KKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~ 98 (337)
+...+.+|+||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 677899999999998874
No 113
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.95 E-value=7.4e-06 Score=76.29 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=42.5
Q ss_pred hhHHHHHhhhhcC-CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694 3 KLVVHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 58 (337)
Q Consensus 3 k~~~~i~k~~l~~-~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~ 58 (337)
+++..++..++.. .....|..|+|.||||+||||+++.++++++..++.++...+.
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 4556666666652 3345688999999999999999999999986567778765444
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.91 E-value=6.6e-06 Score=70.43 Aligned_cols=34 Identities=12% Similarity=-0.142 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.++.|+|.||||+|||++++.+|+.++++++..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3568999999999999999999999999887553
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.91 E-value=8.6e-06 Score=69.89 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
|.+.|+.|+|.|+||+||||+++.+++.++..++.
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 35668899999999999999999999999987665
No 116
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.90 E-value=1.4e-05 Score=90.06 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc----CCCCC--------hHHHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----GNAGE--------PAKLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~----~~~Ge--------~~~~ir~~f~~A~~~~ 80 (337)
.|+.+...++|+||||+|||+||..+|..+ +.+++.++..+... ...|- .+..+.+++..+..++
T Consensus 727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 727 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence 368889999999999999999999997764 44677776654321 11120 1113456666666666
Q ss_pred HhcCceEEEecccccccc
Q 019694 81 KKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~ 98 (337)
+...|.+|+||.+..+..
T Consensus 807 ~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 807 RSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHTCCSEEEESCSTTCCC
T ss_pred HccCCCEEEEechhhhcc
Confidence 778999999999998874
No 117
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.90 E-value=1.2e-05 Score=77.26 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCChH--------HHHHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 80 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge~~--------~~ir~~f~~A~~~~ 80 (337)
.|++....++|+||||+|||+||..+|..+ +..++.++...-.+. ..|... ....++...+..++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 367777889999999999999999987754 566777776432110 001000 01223333343445
Q ss_pred HhcCceEEEecccccccc
Q 019694 81 KKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 81 ~~~~p~Il~IDEiD~l~~ 98 (337)
+...+.+|+||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 577899999999998874
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=8.3e-05 Score=65.11 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
.|++....++|+||||+|||+|++.++..+ +..++.++
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 367777889999999999999999998653 44444443
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.86 E-value=2.6e-05 Score=73.60 Aligned_cols=82 Identities=10% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCcccc--------CCCCC--------------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 64 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~--------~~~Ge-------------- 64 (337)
.|++....++|+||||+|||+||..+|... +...+.++...-.+ ...|-
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 467777889999999999999999998875 44566666554210 00111
Q ss_pred -hHHHHHHHHHHHHHHHHh-cCceEEEeccccccc
Q 019694 65 -PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGA 97 (337)
Q Consensus 65 -~~~~ir~~f~~A~~~~~~-~~p~Il~IDEiD~l~ 97 (337)
....+.+++..+..+++. ..+.+|+||.+..+.
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 011112344455555666 789999999998876
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=3.4e-05 Score=68.41 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH--h-------CCCcEEecCCccccC--------CCCC--------------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELESG--------NAGE-------------- 64 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~--l-------~~~~i~vs~s~l~~~--------~~Ge-------------- 64 (337)
.|++....++|+||||+|||+|++.++.. + +...+.++....... ..|-
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 46777788999999999999999999985 2 345566665441000 0110
Q ss_pred -hHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 65 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 65 -~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
....+...+..+.+.+....|.+|+|||+-.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111122333344455677899999999987663
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=1.3e-05 Score=69.88 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
+.+.+.|+|.||||+||||+++.+|+.++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 345668999999999999999999999999877543
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.79 E-value=1.4e-05 Score=68.25 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
...++.|+|+|+||+|||++++.+++.++..++..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34456799999999999999999999999877654
No 123
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.79 E-value=4.8e-05 Score=69.43 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE 58 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~ 58 (337)
.+..|+|.|+||+||||+|+.+++. .|..++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3567999999999999999999998 78887766665543
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.78 E-value=4.4e-05 Score=72.71 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=53.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC--------CCCCh-------------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGEP------------- 65 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~--------~~Ge~------------- 65 (337)
.|++....++|+||||+|||+||..+|... +...+.++...-.+. ..|-.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 367777889999999999999999998863 445666665442110 00100
Q ss_pred --HHHHHHHHHHHHHHHHh--cCceEEEecccccccc
Q 019694 66 --AKLIRQRYREAADIIKK--GKMCCLMINDLDAGAG 98 (337)
Q Consensus 66 --~~~ir~~f~~A~~~~~~--~~p~Il~IDEiD~l~~ 98 (337)
...+.++...+..+++. ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01111333344455566 7899999999988763
No 125
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.75 E-value=3.2e-05 Score=73.32 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=51.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccC----CCCCh--------HHHHHHH-HHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG----NAGEP--------AKLIRQR-YREAA 77 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~----~~Ge~--------~~~ir~~-f~~A~ 77 (337)
.|++.. .++|+||||+|||+|+-.++.++ +..++.++..+-... ..|-. +....++ +..+.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 456554 67999999999999988775543 556677766532110 01110 0112233 33332
Q ss_pred HH--HHhcCceEEEeccccccccc
Q 019694 78 DI--IKKGKMCCLMINDLDAGAGR 99 (337)
Q Consensus 78 ~~--~~~~~p~Il~IDEiD~l~~~ 99 (337)
.+ ++...|.+|+||=|-++..+
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHhhccCceEEEEecccccccc
Confidence 23 46788999999999988743
No 126
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.74 E-value=2.3e-05 Score=68.23 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-..|..|+|.|+||+||||+|+.+++.++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34567899999999999999999999999886654
No 127
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.73 E-value=2e-05 Score=70.65 Aligned_cols=41 Identities=32% Similarity=0.567 Sum_probs=33.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
....+.|+.|+|.||||+||+|+|+.+++++|++ .++.+++
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdl 63 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDL 63 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHH
Confidence 3456788999999999999999999999999865 4455444
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.73 E-value=6.9e-05 Score=71.66 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCcccc--------CCCCC--------------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGE-------------- 64 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~~--------~~~Ge-------------- 64 (337)
.|++....++|+||||+|||+|++.++.... -..+.++..+... ...+-
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 4677778899999999999999999998762 2446665543210 00000
Q ss_pred -hHHHHHHHHHHHHHHHHh-----cCceEEEeccccccc
Q 019694 65 -PAKLIRQRYREAADIIKK-----GKMCCLMINDLDAGA 97 (337)
Q Consensus 65 -~~~~ir~~f~~A~~~~~~-----~~p~Il~IDEiD~l~ 97 (337)
......+++..+..++.. ..|.+|+|||+-++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 011223445555555666 689999999997765
No 129
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=1.9e-05 Score=67.53 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
|+.|+|.|+||+||||+|+.+++.++++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999976654
No 130
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.72 E-value=1.7e-05 Score=67.78 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=27.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
..|+|.|+||+|||++|+.+++.+|++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 34899999999999999999999998876543
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.71 E-value=0.00014 Score=64.54 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHH
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA 42 (337)
|++....++|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67777889999999999999999988
No 132
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.70 E-value=2.8e-05 Score=65.24 Aligned_cols=32 Identities=16% Similarity=-0.071 Sum_probs=27.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
..|+|.||||+||||+++.+++.++++++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 35889999999999999999999998876443
No 133
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.69 E-value=0.00025 Score=66.86 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=86.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CC-CcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 94 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~-~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD 94 (337)
+.+...|||||+|.||++.++.+++.+ +. ++..+.. + ++ ..++++...+...---+...|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI----D---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC----C---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe----c---CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 467789999999999999999998865 32 2222211 1 11 2235555555222224567899999998
Q ss_pred c-ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC------CCCcchhccCCCceEEE
Q 019694 95 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 167 (337)
Q Consensus 95 ~-l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~------~~ld~aLlR~gR~d~~i 167 (337)
. +... ....|+..+. .+.+.+++|.+|+.+ ..+.+++..++ -. +
T Consensus 87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~--~~-~ 137 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALANRS--VQ-V 137 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC--EE-E
T ss_pred CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc--eE-E
Confidence 6 4210 1123334444 233455666666653 35677776533 32 3
Q ss_pred eC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694 168 WA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 202 (337)
Q Consensus 168 ~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~g 202 (337)
.+ |+.++...+++..+...+ ++.+.+..+++...|
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 33 778888888888876665 455555555554443
No 134
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.67 E-value=2.8e-05 Score=66.32 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
..|+.|+|.|+||+||||+++.+++.++..++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3467899999999999999999999999766544
No 135
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.67 E-value=2.5e-05 Score=67.09 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.++.|+|.|+||+||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456899999999999999999999999876644
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.65 E-value=3e-05 Score=65.38 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-..|+|.|+|||||||+++.+|+++|++++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35789999999999999999999999988754
No 137
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.65 E-value=2.9e-05 Score=68.61 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.+..|+|.|+||+||||+++.+|+.+++.++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 467799999999999999999999999866544
No 138
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.65 E-value=2.7e-05 Score=67.05 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH-hCCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK-MGINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~-l~~~~i~v 52 (337)
+..|+|+|+||+|||++++.+++. +|++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 78776644
No 139
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.65 E-value=2.6e-05 Score=66.89 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 56 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~ 56 (337)
+++.+..+.|.||||+||||+++.++...+...+.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3556778999999999999999999998777777776554
No 140
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.64 E-value=2.4e-05 Score=66.11 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH-HhCCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFA-KMGIN 48 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~-~l~~~ 48 (337)
|+.|+|.|+||+||||+|+.+++ .++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 67899999999999999999998 45543
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.64 E-value=0.00012 Score=71.36 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=52.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCcccc--------CCCCCh-------------
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGEP------------- 65 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~~--------~~~Ge~------------- 65 (337)
.|++.-..++|+||||+|||+|++.++...- ...+.++..+... ..+|-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 4777788899999999999999997764432 2356666543211 001110
Q ss_pred --HHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694 66 --AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 98 (337)
Q Consensus 66 --~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~ 98 (337)
..........+...+....|.+|+||++-.+..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 111223444455556677899999999977653
No 142
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.64 E-value=3e-05 Score=65.46 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
+..|.|.||||+||||+++.+|..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999997554
No 143
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.63 E-value=2.6e-05 Score=66.28 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
.|+|.||||+||||+++.+|+.++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999987764
No 144
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.63 E-value=0.00072 Score=68.18 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.++.|+|+||+|+|||+||+.+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 467899999999999999999864
No 145
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.62 E-value=2.8e-05 Score=69.11 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
..|..|+|.|+||+||||+++.+|+.++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4567899999999999999999999998766543
No 146
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.62 E-value=2.6e-05 Score=66.32 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
|..|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 567999999999999999999999998866
No 147
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.61 E-value=3.2e-05 Score=64.50 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
..|+|.||||+||||+++.+ +.+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 8899887654
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.61 E-value=3.1e-05 Score=66.63 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|+.|+|.|+||+||||+|+.+++.++..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356899999999999999999999999765543
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.60 E-value=4.1e-05 Score=66.62 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
.|+.|+|.|+||+||||+++.+++.+|..++.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 36689999999999999999999999877654
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.59 E-value=4.1e-05 Score=66.47 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
..|+.|+|.|+||+||||+++.+++.+|..++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3467799999999999999999999998766554
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.00016 Score=63.44 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.|++....+.|.||+|+|||+|++.++...
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777889999999999999999999854
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.58 E-value=0.00017 Score=64.00 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH----hCCCcEEecCC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 55 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~----l~~~~i~vs~s 55 (337)
.|+++...++|+|+||+|||++|..+|.+ .+.+++.++..
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 37788888999999999999999876543 35666665543
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.57 E-value=4.2e-05 Score=69.12 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
+.|.-|+|.||||+||||+|+.+++++++..+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678899999999999999999999998766544
No 154
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.57 E-value=3.6e-05 Score=64.79 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
+.|+|.|+||+|||++++.+++.++++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4589999999999999999999999876643
No 155
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.57 E-value=3.2e-05 Score=65.96 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
++.|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999987
No 156
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.57 E-value=3.9e-05 Score=65.48 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
+..|+|.|+||+||||+++.+++.++++++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999876543
No 157
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=5.6e-05 Score=68.06 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
+.+.|....+. .|..+.|.||||+||||+++.+++.+|...+.
T Consensus 15 ~~~~~~~~~~~-~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 15 TENLYFQSMAS-KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp ------------CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHhcC-CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 45556665544 37889999999999999999999999876543
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.54 E-value=0.00011 Score=68.80 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.|++....++|+||||+|||+||..+|..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777788999999999999999999875
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.54 E-value=5.7e-05 Score=68.80 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
+.++|.||||+|||++|+.+|++++..++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 358899999999999999999999988776654
No 160
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.53 E-value=0.0024 Score=64.24 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
..++.|.|+|++|+|||+||+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999997
No 161
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.52 E-value=5.8e-05 Score=67.47 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.+..|+|.|+||+||||+++.+|+++++.++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 356799999999999999999999999776554
No 162
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.52 E-value=5.1e-05 Score=66.64 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-|+|.||||+||||+|+.++++++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998876655
No 163
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.51 E-value=3.2e-05 Score=74.28 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=35.8
Q ss_pred chhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 2 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 2 ~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
++++..+++.+-....-.....|+|+||||+|||++++++|..++.+|+.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45666666665332111122468899999999999999999999988854
No 164
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.51 E-value=5.5e-05 Score=66.31 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-|+|.||||+||||+|+.++++++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999876654
No 165
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.50 E-value=4.7e-05 Score=67.31 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
+..|+|.|+||+||||+++.+|+.++++++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35688999999999999999999999876654
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.48 E-value=0.00022 Score=62.93 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=69.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCCcEEe---cCC------ccccCC-----------CCCh------HHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SAG------ELESGN-----------AGEP------AKLIRQRY 73 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~---l~~~~i~v---s~s------~l~~~~-----------~Ge~------~~~ir~~f 73 (337)
-|++|+++|.|||+.|-.+|-. .|..+..+ ++. .+.... .-.. ....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 4779999999999999988665 47777666 321 122211 1111 23456677
Q ss_pred HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694 74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 153 (337)
Q Consensus 74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l 153 (337)
..+.+.+......+|++||+--...- + -.....+.++| . ....++-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~-g-----~l~~~ev~~~l----~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAY-D-----YLPLEEVISAL----N-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHT-T-----SSCHHHHHHHH----H-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccC-C-----CCCHHHHHHHH----H-------------hCcCCCEEEEECCCC---
Confidence 77766766788899999998432110 0 01111222222 2 334567899999985
Q ss_pred cchhccCCCceEEEeC
Q 019694 154 YAPLIRDGRMEKFYWA 169 (337)
Q Consensus 154 d~aLlR~gR~d~~i~~ 169 (337)
++.|+- .-|.+-++
T Consensus 164 p~~l~e--~AD~VTem 177 (196)
T 1g5t_A 164 HRDILD--LADTVSEL 177 (196)
T ss_dssp CHHHHH--HCSEEEEC
T ss_pred cHHHHH--hCcceeee
Confidence 566653 44444443
No 167
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.48 E-value=6.4e-05 Score=63.05 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|+|.|+||+||||+++.+++.++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887643
No 168
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.47 E-value=4e-05 Score=67.79 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
.|+.|+|.||||+||||+++.+|+.++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999997544
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.45 E-value=0.00023 Score=70.26 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~ 54 (337)
.|+.+...++|.|+||+|||+|+..+|..+ |.+++.++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 367777889999999999999999887653 556666554
No 170
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.44 E-value=0.00047 Score=51.22 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 169 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 169 ~P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+|+.++|.+|++.+++.. .++.+.|++.|+||+|+||..
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 499999999999999865 556799999999999999973
No 171
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.43 E-value=0.00032 Score=69.30 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=66.9
Q ss_pred CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe-----CCCCCCcchhc
Q 019694 84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-----NDFSTLYAPLI 158 (337)
Q Consensus 84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT-----N~~~~ld~aLl 158 (337)
...||++||||+++.+.+ +....+...-+++.|+.++++.++.. .|.....++|++|+|+ |..+ +-|+|+
T Consensus 250 ~~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~---~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~ 324 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSD-LIPELQ 324 (444)
T ss_dssp HHCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSCCGGG-SCHHHH
T ss_pred cCCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhccccccc---ccceecCCcEEEEeccccccCChhh-cchHHh
Confidence 345999999999986543 23445666678889999999654433 2344678899999998 5444 447776
Q ss_pred cCCCceEEEeC--CCHHHHHHHHH
Q 019694 159 RDGRMEKFYWA--PTREDRIGVCK 180 (337)
Q Consensus 159 R~gR~d~~i~~--P~~~~R~~Il~ 180 (337)
|||...+.+ ++.++..+|+.
T Consensus 325 --~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 325 --GRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp --TTCCEEEECCCCCHHHHHHHHH
T ss_pred --cccceeeeCCCCCHHHHHHHHH
Confidence 699999998 88999999983
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00024 Score=62.96 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
.|++....++|+||||+|||+++..++... +...+.++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467777889999999999999998876542 445555544
No 173
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.42 E-value=0.00011 Score=62.13 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
...++|.||||+||||+++.++..+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 467899999999999999999999876544
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.41 E-value=0.00011 Score=64.03 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
+.+..+.|.||+|+||||+++.++..+|.. .+++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 456789999999999999999999999754 4444433
No 175
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.41 E-value=0.0023 Score=69.37 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..++.|.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998775
No 176
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.41 E-value=0.00054 Score=64.91 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
.|+.|+|.||+|+|||++++.+|++++..++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 356899999999999999999999999888877544
No 177
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.39 E-value=0.0006 Score=51.97 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 170 PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 170 P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
|+.++|.+|++.++++. +++.+.|++.|+||+|+||..
T Consensus 11 Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~ 52 (86)
T 2krk_A 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 52 (86)
T ss_dssp CCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 99999999999999865 566799999999999999974
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.39 E-value=0.00011 Score=65.21 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
.|+|.||||+||+|+|+.+|+++|++. +|.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 478899999999999999999998764 444433
No 179
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.38 E-value=0.00074 Score=66.35 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~ 54 (337)
.|+.+...++|.|+||+|||+||..+|... |.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 477777889999999999999999887643 556666554
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.38 E-value=0.00016 Score=61.62 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 56 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~ 56 (337)
..+..|.|.|++|+||||+++.++..+ |++++.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 346678899999999999999999988 88888776543
No 181
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.36 E-value=9.8e-05 Score=64.91 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-|+|.|+||+||||+++.+++.+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999876654
No 182
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.36 E-value=0.00012 Score=65.91 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhcCce
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC 86 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~-------l~~~~~Ge~-----~~~ir~~f~~A~~~~~~~~p~ 86 (337)
..++++||||+|||+++..++..+ |..++.++... +.+. .|-. .....+++..+.+.+....+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 567889999999999988877665 55666553221 2222 1211 001124454442222235689
Q ss_pred EEEeccccc
Q 019694 87 CLMINDLDA 95 (337)
Q Consensus 87 Il~IDEiD~ 95 (337)
+|+|||+.-
T Consensus 92 vViIDEaQ~ 100 (223)
T 2b8t_A 92 VIGIDEVQF 100 (223)
T ss_dssp EEEECSGGG
T ss_pred EEEEecCcc
Confidence 999999964
No 183
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.36 E-value=0.00012 Score=63.14 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEec
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 53 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs 53 (337)
.++.|.|.|+||+||||+++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46779999999999999999999998 57766654
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.35 E-value=0.00015 Score=63.86 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
+..|.|.||+|+||||+++.+++.+|++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457899999999999999999999997655
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.33 E-value=0.00017 Score=61.52 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
.|.|.|+||+||||+++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88877664
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00055 Score=59.45 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l 57 (337)
..+..|.|.||+|+||||++++++..+ |...+.+++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999988 544345554443
No 187
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.26 E-value=9.4e-05 Score=64.33 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
..++.|.|.|+||+||||+++.+++.++...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 34678999999999999999999998865433
No 188
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.26 E-value=0.00021 Score=61.79 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=27.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|.|.|++|+|||++++.+|+.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999999877754
No 189
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.26 E-value=0.00017 Score=65.14 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCc--------EEecCCcccc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELES 59 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~--------i~vs~s~l~~ 59 (337)
..|..|.|.|+||+||||+|+.+++.++.++ ..++..++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4577899999999999999999999999763 3566666554
No 190
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.26 E-value=0.00018 Score=62.19 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
++.|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999999998874
No 191
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.26 E-value=0.00016 Score=62.20 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
.|.|.|+||+||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998655
No 192
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.25 E-value=0.0001 Score=62.72 Aligned_cols=25 Identities=28% Similarity=0.066 Sum_probs=22.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.|+|.|+||+||||+++.+++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999886
No 193
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.24 E-value=0.00018 Score=63.91 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-|+|.|+||+||||+++.+++.+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998755443
No 194
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.24 E-value=0.00021 Score=64.73 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
.|..|.|.||||+|||++++.+|+.+++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 46789999999999999999999999976543
No 195
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.24 E-value=0.00022 Score=61.12 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
-|.|.|++|+||||+++.+++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 98877553
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.24 E-value=0.0012 Score=61.90 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
..|..++|.||+|+||||++..+|..+ +..+..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 467889999999999999999998765 44444443
No 197
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.24 E-value=0.00017 Score=62.66 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
+..|.|.||+|+||||+++.++. +|.+++.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 35688999999999999999987 8877653
No 198
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.23 E-value=0.00019 Score=61.87 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|..|.|.|++|+||||+++.+++. |++++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3678999999999999999999998 7766643
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.22 E-value=0.00011 Score=63.82 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
.|+.|.|.|+||+||||+++.+++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999987543
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.21 E-value=0.00017 Score=62.50 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
.|.|.|++|+||||+++.+++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887665543
No 201
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.20 E-value=0.00076 Score=64.29 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
.++.|+|.||+|+|||+|+..+|++++..++..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 346799999999999999999999999877765544
No 202
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.17 E-value=0.00086 Score=58.69 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCcc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 57 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l 57 (337)
...+..|+|.|+||+||||+++.++..++ .+++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45567899999999999999999998764 55777765444
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.17 E-value=0.0029 Score=59.32 Aligned_cols=39 Identities=15% Similarity=-0.118 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
.|+.+..-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 477777889999999999999999988654 345555543
No 204
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.16 E-value=0.00069 Score=59.02 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=34.5
Q ss_pred hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
++..++...+.. ....+..+.|.||+|+||||+++.++..+ +.+++..+.
T Consensus 6 ~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 6 RIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp HHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred HHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 344444443333 24557789999999999999999999875 555555543
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.15 E-value=0.00021 Score=62.27 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEe
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMM 52 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~v 52 (337)
.++.+..|.|.|+||+||||+++.++..+ ++.++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 45667789999999999999999999987 5554433
No 206
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.14 E-value=0.002 Score=58.01 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
...|++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3568999999999999998887764 666654444
No 207
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.14 E-value=0.00043 Score=67.60 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
..|..|+|.|+||+||||+|+.+++.+++. .++...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~--~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCE--ECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcE--EEccchH
Confidence 357889999999999999999999998754 4454444
No 208
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.13 E-value=0.00049 Score=69.28 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGE 56 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~ 56 (337)
.|..|+|.|.||+||||+|+.+|+.+++ ....++..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4677999999999999999999999854 444455443
No 209
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.13 E-value=0.00034 Score=61.28 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.1
Q ss_pred hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
++..++...... .+.+..+.|.||+|+|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 333444443333 45567889999999999999999999875
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.11 E-value=0.00052 Score=62.90 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+++...++|.||+|+||||+.++++...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4555678999999999999999998865
No 211
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.09 E-value=0.00028 Score=61.76 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
-..|.|+|++||||||+++.+++.+|++++..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 356889999999999999999999898766543
No 212
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.08 E-value=0.00039 Score=61.00 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|..|.|.|++|+||||+++.++. +|.+++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 367899999999999999999988 88765543
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.08 E-value=0.00044 Score=59.15 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG 55 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s 55 (337)
..+..|+|.|+||+||||+++.++..++ ..+..++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 3567789999999999999999999874 344555443
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.07 E-value=0.0015 Score=64.37 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc-------------------c-CCCCChHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-------------------S-GNAGEPAKLIRQRYREA 76 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~-------------------~-~~~Ge~~~~ir~~f~~A 76 (337)
.|..|++.|+||+||||++..+|..+ |..+..+++.... . .....+...++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998765 5666666544221 1 11123444445555555
Q ss_pred HHHHHhcCceEEEeccc
Q 019694 77 ADIIKKGKMCCLMINDL 93 (337)
Q Consensus 77 ~~~~~~~~p~Il~IDEi 93 (337)
+.....+|+||..
T Consensus 179 ----~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 ----KSKGVDIIIVDTA 191 (443)
T ss_dssp ----HHTTCSEEEEECC
T ss_pred ----HhCCCCEEEEECC
Confidence 6666889999975
No 215
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.05 E-value=0.00046 Score=65.11 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l 57 (337)
+.|+.|+|.||+|+|||+||..+|+.++..++..+.-.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 457789999999999999999999999987776655443
No 216
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.05 E-value=0.00032 Score=61.52 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
|..|.|.|++|+|||++++.+++.+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45789999999999999999999999876644
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.03 E-value=0.0023 Score=63.05 Aligned_cols=39 Identities=15% Similarity=-0.098 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
|+.+..-++|.|+||+|||+||-.+|... |.+++.++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 67777789999999999999999887654 5566666543
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.02 E-value=0.00069 Score=64.97 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=40.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecC-Ccccc---------CCCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG----INPIMMSA-GELES---------GNAGEPAKLIRQRYREAADIIKKGKMCC 87 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~-s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 87 (337)
..+++.||+|+||||+.++++..+. ..++.+.. .++.. ..++.........+..| -...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----LREDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----hhhCcCE
Confidence 3588999999999999999988652 33332211 11110 01111111122233333 5789999
Q ss_pred EEeccc
Q 019694 88 LMINDL 93 (337)
Q Consensus 88 l~IDEi 93 (337)
|++||+
T Consensus 200 illDEp 205 (356)
T 3jvv_A 200 ILVGEM 205 (356)
T ss_dssp EEESCC
T ss_pred EecCCC
Confidence 999998
No 219
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.02 E-value=0.00035 Score=64.42 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-CCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i 50 (337)
|+.|+|.|+||+||||+++.+++++ ++.++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5789999999999999999999974 55444
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.02 E-value=0.00045 Score=62.64 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
...|.|.||+|+||||+++.+|+++|+.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 357889999999999999999999998655
No 221
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.02 E-value=0.002 Score=64.21 Aligned_cols=39 Identities=10% Similarity=-0.048 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 55 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s 55 (337)
|+.+...++|.|+||+|||+|+..+|... |.+++.++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 67777789999999999999999988764 4456666543
No 222
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00052 Score=61.27 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
...+..|.|.|++|+|||++++.+++.+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3456679999999999999999999999977654
No 223
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.00 E-value=0.0018 Score=58.15 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
.++|.||+|+|||.++.+++.+++...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 488999999999999999999887776666544
No 224
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.99 E-value=0.0004 Score=64.18 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
.|..|.|.|+||+||||+|+.++ ++|++++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 36789999999999999999999 688765543
No 225
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00041 Score=63.33 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
...|.|.|++|+||||+++.+|..+|++++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999877754
No 226
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.94 E-value=0.00046 Score=59.51 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+..+..+.|.||+|+||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999999876
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.93 E-value=0.00047 Score=60.08 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
..++.|+|.||||+||||+++.+++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3467789999999999999999999885
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.001 Score=63.98 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+++...++|.||+|+||||+.++++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455678999999999999999998865
No 229
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.81 E-value=0.0028 Score=60.33 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
.|+.+..-++|.|+||+|||+|+..+|... +.++..++.
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 377777789999999999999999987763 556555544
No 230
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.79 E-value=0.00079 Score=64.22 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
++.|+|.||+|+|||++|+.+|..++..++..+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 4679999999999999999999999966555543
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.78 E-value=0.0023 Score=62.95 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
.|..+++.||+|+||||++..+|..+ |..+..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 47889999999999999999998765 566655554
No 232
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.76 E-value=0.00085 Score=63.39 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
++.|+|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45788999999999999999999998766655443
No 233
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.76 E-value=0.00082 Score=58.90 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
+.+..+.|.||+|+||||+++.++..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34667899999999999999999998753
No 234
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.76 E-value=0.00072 Score=58.81 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 51 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~ 51 (337)
+.+..+.|.||+|+||||+++.++..++ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4567789999999999999999999887 54443
No 235
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.76 E-value=0.00099 Score=58.49 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
..|.|.|++|||||++++.+|+++|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 478999999999999999999999999883
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.75 E-value=0.00099 Score=56.96 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
..++|.||+|+||||+++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 45789999999999999999986643
No 237
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.72 E-value=0.0018 Score=61.17 Aligned_cols=38 Identities=37% Similarity=0.540 Sum_probs=31.0
Q ss_pred HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
...++.....+.|..+.|.||+|+||||+++.++..++
T Consensus 80 ~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 80 TYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445555567788999999999999999999998875
No 238
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.72 E-value=0.017 Score=58.56 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=27.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh-------CCCcEEecCCc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAGE 56 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l-------~~~~i~vs~s~ 56 (337)
-.+|+.|.+|+|||++.+.+...+ .+.++.++...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 368999999999999999876654 24577776653
No 239
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.69 E-value=0.0011 Score=64.52 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
+++.|+|.||+|+|||+|+..+|+.++..++..+.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 45678999999999999999999999877665543
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.0011 Score=56.58 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.+.|.||+|+|||||++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998764
No 241
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.69 E-value=0.0033 Score=64.64 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 57 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l 57 (337)
.+..|+|.|+||+||||+|+++++.+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46779999999999999999999999 999988865444
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.67 E-value=0.0012 Score=56.89 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 55 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s 55 (337)
....+.|.||+|+||||+++.++..+. .+.+...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~ 39 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISIS 39 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence 456788999999999999999998853 4444443
No 243
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.65 E-value=0.00091 Score=60.36 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 52 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v 52 (337)
-+.|.||||+||||+|+.+++.++++.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999876533
No 244
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.64 E-value=0.0018 Score=60.41 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=28.5
Q ss_pred hhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 10 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 10 k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.++.......+..+.|.||+|+||||+++.++..++
T Consensus 69 ~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 69 EQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344333445677899999999999999999999876
No 245
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.61 E-value=0.0018 Score=60.21 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
..+.|..|.|.||+|+||||+++.++..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456688999999999999999999998875
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.52 E-value=0.0013 Score=56.34 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
|+.+.|.||+|+||||+++.++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 247
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.50 E-value=0.016 Score=57.91 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHH--HHHh--CCCcEEecCC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELV--FAKM--GINPIMMSAG 55 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~ai--A~~l--~~~~i~vs~s 55 (337)
+++....++|.||+|+|||+|++.+ +... +-..+.+++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5666778999999999999999994 3322 3344555443
No 248
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.48 E-value=0.0025 Score=60.26 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCcccc-----C---CCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELES-----G---NAGEPAKLIRQRYREAADIIKKGKMCCLMI 90 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~-----~---~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I 90 (337)
...++|.||+|+|||||.++++..... ..+.+.+..... . ++.......+.....| -...|.+|++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a----L~~~p~ilil 246 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIIL 246 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH----hhhCCCEEEE
Confidence 356899999999999999999987642 345554332110 0 1100111223444444 5678999999
Q ss_pred cccc
Q 019694 91 NDLD 94 (337)
Q Consensus 91 DEiD 94 (337)
||.-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9974
No 249
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.48 E-value=0.0019 Score=57.99 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
++.+..|.|.||.|+||||+++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4455678999999999999999999988754
No 250
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.45 E-value=0.0013 Score=58.20 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~ 54 (337)
.++|+|.||+|+|||+||..+++... .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 67899999999999999999998866 5554443
No 251
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.41 E-value=0.0025 Score=57.03 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
...++-|.|.||||+||||+++.+++.++
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34567788999999999999999999986
No 252
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.40 E-value=0.002 Score=57.65 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 51 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~ 51 (337)
...|.|.|++|||||++++.+|+++|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3578999999999999999999999998764
No 253
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.37 E-value=0.0084 Score=60.04 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
..|+.|+|.|+||+||||++..+|..+ |..+..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 347789999999999999999998765 666666655
No 254
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.34 E-value=0.0012 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
.|.|.|++|+||||+++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998853
No 255
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.33 E-value=0.0017 Score=49.57 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.++++. +++.+.|++.|+||+|+||..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~ 42 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 42 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHH
Confidence 4578999999998765 456799999999999999963
No 256
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.28 E-value=0.0075 Score=61.33 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l 57 (337)
..+..|+|.|+||+||||+|+++++.++ .+++.++...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3467789999999999999999999986 67777765544
No 257
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.27 E-value=0.0015 Score=60.72 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 57 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l 57 (337)
+..|.|.||+|+||||+|+.+++.++ ..+..++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 55799999999999999999999776 44555665544
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.26 E-value=0.0051 Score=60.77 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
..|.-|+|.|.||+|||++++.+++.++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 346789999999999999999999987543
No 259
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.25 E-value=0.0062 Score=60.43 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999887654
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0023 Score=55.71 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+++.+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999988764
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.23 E-value=0.003 Score=55.09 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.....+.|.||+|+|||||++.++..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445556788999999999999999998874
No 262
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.18 E-value=0.012 Score=57.09 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=45.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCc---------------cccCCCCCh-HHHHH---HHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE---------------LESGNAGEP-AKLIR---QRYREAA 77 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~---------------l~~~~~Ge~-~~~ir---~~f~~A~ 77 (337)
.-++|.||+|+|||+|++.+++.. ++.++.+-.++ +......++ ...++ .....|.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AE 254 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 254 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 458999999999999999998754 33333332221 111112222 22222 2233343
Q ss_pred HHHHhcCceEEEeccccccc
Q 019694 78 DIIKKGKMCCLMINDLDAGA 97 (337)
Q Consensus 78 ~~~~~~~p~Il~IDEiD~l~ 97 (337)
.....++..+|++|++-+.+
T Consensus 255 yfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 255 RLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp HHHHTSCEEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEEeCchHHH
Confidence 44457889999999987654
No 263
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.17 E-value=0.002 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCEL 40 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~a 40 (337)
+.+..+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456789999999999999995
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.15 E-value=0.0049 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
|.|.||+|+|||+|++.+.++..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCC
Confidence 7899999999999999998886533
No 265
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.13 E-value=0.0026 Score=58.17 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.|++....++|+||||+|||+|+..++..+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467767789999999999999999998643
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.11 E-value=0.0034 Score=57.75 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=29.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEec
Q 019694 16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 53 (337)
Q Consensus 16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs 53 (337)
.++++...++|.||||+|||+|++.+|..+ |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467777789999999999999999998764 43454444
No 267
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0035 Score=55.88 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
|+.|.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67799999999999999999999984
No 268
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.09 E-value=0.0053 Score=53.98 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.++.+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356788999999999999999998765
No 269
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.02 Score=53.16 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
.++.+.+.|++|+||||++..+|..+ +..+..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 56788899999999999999998764 44444443
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.04 E-value=0.0036 Score=55.33 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++....+.|.||+|+|||||++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445568899999999999999999876
No 271
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.04 E-value=0.022 Score=63.37 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
++-.-+.|.||.|+|||||++++...+..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 44456889999999999999999887643
No 272
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.03 E-value=0.019 Score=56.36 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 55 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s 55 (337)
..|+.|++.|++|+||||++-.+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457899999999999999999888664 6677776665
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.98 E-value=0.02 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..|..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999998865
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.98 E-value=0.018 Score=53.64 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
+..+++.|++|+||||++..+|..+ +..+..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7788999999999999999998765 555555554
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.98 E-value=0.0054 Score=51.81 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++....+.|.||.|+|||||.+.++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444568899999999999999999987
No 276
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.96 E-value=0.0049 Score=57.86 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.+..+.|.||+|+|||||++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56678899999999999999999998764
No 277
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.95 E-value=0.0018 Score=58.65 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.++-|.|.|++|+||||+++.+++.+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34577899999999999999999999983
No 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.94 E-value=0.032 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
++.|.|+||+|+|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 678999999999999999999863
No 279
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.94 E-value=0.0064 Score=52.71 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694 24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 56 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~ 56 (337)
+|++|++|+|||++|+.++.. +.+.+.+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 87877777654
No 280
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.91 E-value=0.044 Score=51.98 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v 52 (337)
.+.-|.|.|+||+|||+++..++..+ |..+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 45678999999999999999998775 4444433
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.83 E-value=0.0026 Score=56.27 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH-HHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVF-AKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA-~~l 45 (337)
+....+.|.||+|+||||+++.++ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445678999999999999999999 765
No 282
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.82 E-value=0.0064 Score=62.49 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHH-HHHHHHH--hCCCcEEecCC
Q 019694 23 ILGIWGGKGQGKSFQ-CELVFAK--MGINPIMMSAG 55 (337)
Q Consensus 23 giLL~GpPGtGKT~l-A~aiA~~--l~~~~i~vs~s 55 (337)
-.|++||||||||+. +..|+.. .+..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 468999999999964 4444332 25555555544
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0096 Score=55.60 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++.+..+.|.||.|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999999875
No 284
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.80 E-value=0.02 Score=61.28 Aligned_cols=26 Identities=23% Similarity=0.043 Sum_probs=21.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
+.....++|.||.|+||||+.+.++.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 33456799999999999999998863
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.80 E-value=0.0065 Score=56.97 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+++...+.|+||+|+|||||+++++..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45556679999999999999999999987
No 286
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.75 E-value=0.0047 Score=61.96 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCc-cccC-----------CCCChHHHHHHHHHHHHHHHHhcCc
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKM 85 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~-l~~~-----------~~Ge~~~~ir~~f~~A~~~~~~~~p 85 (337)
...+++|.||+|+||||+.++++..+.- ..+.+.... +.-. .++.....+....+.+ -...|
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~----LR~~P 334 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA----LRQRP 334 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT----GGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh----hccCC
Confidence 4557999999999999999999887642 345554332 2100 0011111122233333 46689
Q ss_pred eEEEecccc
Q 019694 86 CCLMINDLD 94 (337)
Q Consensus 86 ~Il~IDEiD 94 (337)
.++++.|+-
T Consensus 335 D~iivgEir 343 (511)
T 2oap_1 335 DYIIVGEVR 343 (511)
T ss_dssp SEEEESCCC
T ss_pred CeEEeCCcC
Confidence 999999973
No 287
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.75 E-value=0.0068 Score=52.06 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+....+.|.|++|+|||++++.+...+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999998764
No 288
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.75 E-value=0.047 Score=57.32 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
...++|.||.|+||||+.|.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 45789999999999999999875
No 289
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.73 E-value=0.0093 Score=60.28 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 57 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l 57 (337)
+.+..|+|.|+||+||||+++.+++.++ .++..++...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3457789999999999999999999864 45666665443
No 290
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.73 E-value=0.0061 Score=54.13 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 53 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs 53 (337)
--.|.|+|..|||||++++.+++ +|++++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 34789999999999999999987 888776544
No 291
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.70 E-value=0.011 Score=57.94 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=40.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCccccCCCCC----hHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGE----PAKLIRQRYREAADIIKKGKMCCLMINDL 93 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~l~~~~~Ge----~~~~ir~~f~~A~~~~~~~~p~Il~IDEi 93 (337)
..++|.||+|+||||+.++++..+.. .++.+ ...+.....+. ....+.-.|..+...+-...|.++++.|+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~-ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV-EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE-ESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe-cccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 45789999999999999999998753 23332 22221110000 00001113433322224568999999986
No 292
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.67 E-value=0.0071 Score=52.31 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINP 49 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~ 49 (337)
-+|+||.|++|+|||++|.++.+. |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 469999999999999999999874 5433
No 293
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.66 E-value=0.0093 Score=51.41 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEe
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 52 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v 52 (337)
.+.++++||||+|||+++..++..+ +...+.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568899999999999986665543 5554444
No 294
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.63 E-value=0.0057 Score=60.16 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998876
No 295
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.61 E-value=0.0078 Score=53.50 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+....+.|.||+|+|||||.+.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456788999999999999999998765
No 296
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.61 E-value=0.11 Score=51.97 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-------CCCcEEecCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG 55 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l-------~~~~i~vs~s 55 (337)
.+|+.|++|+|||++.+++...+ .+.++.++..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 68999999999999999986543 2356666544
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.60 E-value=0.0069 Score=52.62 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+.|.||+|+||||+.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.55 E-value=0.0086 Score=51.33 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
++.+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4578999999999999999998875 45544444
No 299
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.54 E-value=0.057 Score=57.91 Aligned_cols=22 Identities=23% Similarity=-0.003 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA 42 (337)
...++|.||.|+||||+.|.++
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999984
No 300
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.53 E-value=0.0068 Score=53.52 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-cEEecCC
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIMMSAG 55 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-~i~vs~s 55 (337)
+..|++.|+|+|.||+||+++|+.+.+.+|.. +..++.+
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~ms 46 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLS 46 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEcc
Confidence 44578999999999999999999998877642 3344443
No 301
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.53 E-value=0.0089 Score=52.91 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEe
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMM 52 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~v 52 (337)
..+-|.|.|++|+||||+++.+++.+. .+++..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 356788999999999999999999874 454444
No 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.51 E-value=0.014 Score=55.85 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++.|..++|.||.|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3467789999999999999999999875
No 303
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.49 E-value=0.019 Score=50.40 Aligned_cols=36 Identities=19% Similarity=-0.030 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCchHH-HHHHHHHHH--hCCCcEEecCC
Q 019694 20 VPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSAG 55 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT-~lA~aiA~~--l~~~~i~vs~s 55 (337)
.-+..++|||.|+||| .|.+++.+. .+..++.++..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4577889999999999 899988664 46677777643
No 304
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.43 E-value=0.0092 Score=44.54 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
+.++|.+|++.++++. +++.+.|++.|+||+|+||..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~ 42 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 42 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 6789999999999765 456689999999999999974
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.40 E-value=0.012 Score=55.09 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 306
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.38 E-value=0.079 Score=55.91 Aligned_cols=25 Identities=24% Similarity=-0.003 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
....++|+||.|+||||+.|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3467899999999999999998753
No 307
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.38 E-value=0.0087 Score=60.83 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
...++|+||||||||+++.+++..+ +..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 4578899999999999999987754 555555443
No 308
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.34 E-value=0.016 Score=51.54 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
.++-|.|.|++|+||||+++.+++.++....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 3567889999999999999999999987433
No 309
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.33 E-value=0.019 Score=53.96 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=28.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
...|+.+++.||+|+||||++..+|..+ +..+..+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3567889999999999999999998765 455555544
No 310
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.32 E-value=0.018 Score=57.45 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+..+..++|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567789999999999999999999865
No 311
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.27 E-value=0.015 Score=52.19 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..+-|.|.||+|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999999987
No 312
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.27 E-value=0.011 Score=54.95 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 55 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s 55 (337)
..+..++|.||+|+||||++..+|..+ |..+..+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356789999999999999999998754 4455555543
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.27 E-value=0.012 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
|...+|+||.|+|||++.++|+--++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 346789999999999999999887753
No 314
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.26 E-value=0.038 Score=54.44 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=21.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
....+..++.|+||||||++...++.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 34557889999999999999988765
No 315
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.23 E-value=0.012 Score=53.15 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.++-|.|.|++|+||||+++.+++.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999998763
No 316
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.05 E-value=0.012 Score=53.13 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
++. ..+.|.||.|+|||||.+.++.-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 7888999999999999999987653
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.01 E-value=0.075 Score=51.98 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 54 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~ 54 (337)
.|..+++.|++|+||||++..+|..+ +..+..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 57889999999999999999998765 444554443
No 318
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.00 E-value=0.012 Score=58.96 Aligned_cols=28 Identities=0% Similarity=-0.150 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
.+..|.|.|.+||||||+++++|+.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4467889999999999999999999985
No 319
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.92 E-value=0.012 Score=52.87 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++....+.|.||.|+|||||.+.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444578899999999999999998754
No 320
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.92 E-value=0.019 Score=51.37 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC----CcEE
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM 51 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~ 51 (337)
..++-|.|.|++|+||||+++.+++.++. +++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34677888999999999999999987654 5555
No 321
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.91 E-value=0.013 Score=60.08 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..+++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776554
No 322
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.91 E-value=0.012 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.+.|.|++|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999988763
No 323
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.86 E-value=0.013 Score=59.45 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCcc
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 57 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l 57 (337)
+.....+.|.|++|+||||++++++..++ ..+..+++..+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34556789999999999999999999885 23444555443
No 324
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.83 E-value=0.013 Score=52.53 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+..-..+.|.||.|+|||||.+.++.-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34445688999999999999999987553
No 325
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.79 E-value=0.01 Score=52.77 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
....+.|.||.|+|||||.+.++.-..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999987543
No 326
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.74 E-value=0.062 Score=52.67 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=46.5
Q ss_pred ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-------------CC
Q 019694 85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------FS 151 (337)
Q Consensus 85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-------------~~ 151 (337)
|.|+||||+|.+.. .....|+..+. ++...+ +|++||. ++
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~-~il~tn~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPI-VIFASNRGNCVIRGTEDITSPH 348 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCE-EEEEECCSEEECBTTSSCEEET
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCE-EEEecCCccccccccccccccc
Confidence 47999999997631 22344555555 223344 4444433 77
Q ss_pred CCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694 152 TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR 184 (337)
Q Consensus 152 ~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~ 184 (337)
.|++.++. ||-.+ .+ |+.++..+|++....
T Consensus 349 ~l~~~i~s--R~~~~-~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 349 GIPLDLLD--RVMII-RTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp TCCHHHHT--TEEEE-ECCCCCHHHHHHHHHHHHH
T ss_pred cCChhHHh--hccee-eCCCCCHHHHHHHHHHHHH
Confidence 88888886 77764 55 899999999987764
No 327
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.68 E-value=0.015 Score=53.11 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+....+.|.||.|+|||||.++++.-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445688999999999999999987654
No 328
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.64 E-value=0.015 Score=52.27 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++....+.|.||.|+|||||.+.++.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568899999999999999998754
No 329
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.64 E-value=0.019 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-++|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999875
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.63 E-value=0.019 Score=54.61 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
..-+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999987643
No 331
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.59 E-value=0.018 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.-+.|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 467899999999999999998754
No 332
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.58 E-value=0.019 Score=52.50 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
++....+.|.||.|+|||||.+.++.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344456889999999999999999875
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.57 E-value=0.014 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
....+.|.||.|+|||||.+.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 334
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.54 E-value=0.021 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~ 44 (337)
-|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999764
No 335
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.52 E-value=0.022 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+-|.|.|++|+||||+++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 336
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.52 E-value=0.017 Score=52.61 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+....+.|.||.|+|||||.+.++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568999999999999999998754
No 337
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.51 E-value=0.2 Score=54.25 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA 42 (337)
...++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999983
No 338
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.50 E-value=0.1 Score=49.14 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
......+.|.|+||+||||++..++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456778899999999999999998764
No 339
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.50 E-value=0.017 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-..+.|.||.|+|||||.+.++.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999874
No 340
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.50 E-value=0.021 Score=58.41 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+-++++||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578999999999999888776543
No 341
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.48 E-value=0.017 Score=52.78 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG 55 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s 55 (337)
+....+.|.||.|+|||||.+.++.-... .-+.+++.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 86 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI 86 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCE
Confidence 44456889999999999999999876542 23444443
No 342
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.43 E-value=0.018 Score=52.79 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+....+.|.||.|+|||||.+.++..+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445688999999999999999987654
No 343
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.40 E-value=0.016 Score=52.68 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.-..+.|.||.|+|||||.+.++.-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999987653
No 344
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.40 E-value=0.024 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|..++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.38 E-value=0.029 Score=48.36 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.+.-|+|.|++|+|||+|..++....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998764
No 346
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.37 E-value=0.016 Score=52.35 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+....+.|.||.|+|||||.+.++.-..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445688999999999999999987653
No 347
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.36 E-value=0.016 Score=51.63 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
....+.|.||.|+|||||.+.++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 445688999999999999999988653
No 348
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.36 E-value=0.016 Score=52.00 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
....+.|.||.|+|||||.+.++.-..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999987653
No 349
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.35 E-value=0.045 Score=48.73 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh--CCCcEEec
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 53 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l--~~~~i~vs 53 (337)
..+..+++.|.+|+||||++..+|..+ |..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345678899999999999999998776 55555554
No 350
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.34 E-value=0.018 Score=51.00 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
....+.|.||.|+|||||.+.++....
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344588999999999999999987653
No 351
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.34 E-value=0.016 Score=56.81 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 55 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s 55 (337)
.|..|++.|+||+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999998865 4556666554
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.33 E-value=0.025 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|+||+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 353
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.32 E-value=0.12 Score=50.29 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=43.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCc-------cccCC--------CCChH-HHHHH---HHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE-------LESGN--------AGEPA-KLIRQ---RYREAAD 78 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~-------l~~~~--------~Ge~~-~~ir~---~f~~A~~ 78 (337)
-++|.|+||+|||+|+..|++.. ++.++.+-.++ +.... ..++. ..++. ....|..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEy 256 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKR 256 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 37899999999999999888853 34434332221 22221 22222 22222 2233433
Q ss_pred HHHhcCceEEEecccccc
Q 019694 79 IIKKGKMCCLMINDLDAG 96 (337)
Q Consensus 79 ~~~~~~p~Il~IDEiD~l 96 (337)
....++..+|++|++-..
T Consensus 257 frd~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 257 LVEFNYDVVILLDSLTRL 274 (427)
T ss_dssp HHHTTCEEEEEEECHHHH
T ss_pred HHHcCCCEEEecccchHH
Confidence 444788899999998644
No 354
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.29 E-value=0.02 Score=52.07 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.....+.|.||.|+|||||.+.++.-..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445688999999999999999987653
No 355
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.28 E-value=0.024 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999865
No 356
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.27 E-value=0.021 Score=52.19 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+....+.|.||.|+|||||.+.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999998754
No 357
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.26 E-value=0.025 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.+..|.|.||.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567889999999999999999887
No 358
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.26 E-value=0.017 Score=52.19 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGINP 49 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~ 49 (337)
+.|.|+|++|+|||++++.+...+|++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3588999999999999999998888664
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.034 Score=46.82 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..+.-|++.|++|+|||+|..++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998753
No 360
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.22 E-value=0.018 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.-..+.|.||.|+|||||.++++.-..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345688999999999999999987553
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.22 E-value=0.035 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA 42 (337)
+.+.-|++.|++|+|||+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456779999999999999998886
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.19 E-value=0.023 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.-..+.|.||.|||||||.+.||.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33458899999999999999999855
No 363
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.19 E-value=0.028 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|..++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999764
No 364
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.18 E-value=0.025 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
.+.|.||+|+|||||.++++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998653
No 365
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.17 E-value=0.028 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 366
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.17 E-value=0.023 Score=54.22 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-..+.|.||.|||||||.+.||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 334568899999999999999998754
No 367
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.17 E-value=0.019 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
....+.|.||.|+|||||.+.++..+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345688999999999999999987653
No 368
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.16 E-value=0.026 Score=54.07 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-..+.|.||.|||||||.+.+|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 334568899999999999999998754
No 369
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.15 E-value=0.019 Score=52.59 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.-..+.|.||.|+|||||.++++.-..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3445688999999999999999987653
No 370
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.13 E-value=0.024 Score=59.84 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..+++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776653
No 371
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.12 E-value=0.022 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~ 43 (337)
-|+|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999976
No 372
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.12 E-value=0.027 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.-|.|.|+||+|||+|.+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4588999999999999999975
No 373
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.11 E-value=0.026 Score=54.06 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.-..+.|.||.|||||||.+.||.-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3345688999999999999999988653
No 374
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.11 E-value=0.019 Score=52.02 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+....+.|.||.|+|||||.+.++.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999998764
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.10 E-value=0.03 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..-|++.|++|+|||+|.+++....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999997753
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.033 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+..++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45788999999999999999998864
No 377
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.08 E-value=0.089 Score=47.57 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999754
No 378
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.07 E-value=0.023 Score=56.82 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 17 NIKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++..-..++|.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666779999999999999999998754
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.06 E-value=0.03 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999764
No 380
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.05 E-value=0.029 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998653
No 381
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.03 E-value=0.028 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-..+.|.||.|||||||.+.||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344568899999999999999998754
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.03 E-value=0.031 Score=45.68 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|.+++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 383
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.01 E-value=0.038 Score=52.24 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.....+.|.||||+|||||.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455678899999999999999998764
No 384
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.00 E-value=0.052 Score=47.59 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=25.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh--CCCcEEe
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM--GINPIMM 52 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l--~~~~i~v 52 (337)
+-|.|-|+.|+||||+++.+++.+ |.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 457789999999999999999988 4454444
No 385
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.00 E-value=0.031 Score=46.09 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|++.|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 386
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.00 E-value=0.029 Score=54.22 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-..+.|.||.|||||||.+.||.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 334568899999999999999998865
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.00 E-value=0.03 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.99 E-value=0.021 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
....+.|.||.|+|||||.+.++..+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345688999999999999999987654
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.96 E-value=0.023 Score=54.25 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-..+.|.||.|||||||.+.||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334568899999999999999998754
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.95 E-value=0.043 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|++.|++|+|||+|...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999763
No 391
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.94 E-value=0.025 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.-..+.|.||.|||||||.+.||.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468899999999999999998755
No 392
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.93 E-value=0.034 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 393
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.89 E-value=0.037 Score=45.00 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~ 44 (337)
|++.|++|+|||+|...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 394
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=93.88 E-value=0.016 Score=43.20 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694 173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 207 (337)
Q Consensus 173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~ 207 (337)
++|.+|++.++++. +++.+.|++.|+||+|+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~ 39 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 39 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 46889999888764 566789999999999999974
No 395
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.85 E-value=0.033 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~ 43 (337)
-|++.|+||+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999853
No 396
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.033 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.-|++.|++|+|||+|..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999999976
No 397
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.85 E-value=0.036 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999764
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.80 E-value=0.028 Score=54.07 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
.-..+.|.||.|||||||.+.||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34568899999999999999999765
No 399
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.80 E-value=0.03 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~ 43 (337)
-|+|.|+||+|||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 400
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.77 E-value=0.025 Score=53.95 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEec
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS 53 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs 53 (337)
.-..++|.||+|+|||||+++++..... ..+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 3456899999999999999999987642 344444
No 401
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.77 E-value=0.14 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
++-.-|.|.||.|+|||||++++..-.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 344568899999999999999997754
No 402
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.76 E-value=0.04 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
|...+|+||.|+|||++..|+.--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4466899999999999999997655
No 403
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.75 E-value=0.038 Score=46.04 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..+.-|+|.|++|+|||+|..++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 33467899999999999999999864
No 404
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.70 E-value=0.047 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.+.-|++.|++|+|||+|...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455688999999999999999965
No 405
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.70 E-value=0.036 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999754
No 406
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.70 E-value=0.033 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998653
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.045 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
....-|+|.|++|+|||+|...+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999875
No 408
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.70 E-value=0.039 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..-|++.|++|+|||+|.+.+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999997653
No 409
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.68 E-value=0.036 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|+|.|++|+|||+|.+.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999863
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.62 E-value=0.04 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-|++.|++|+|||+|..++....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999998643
No 411
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.035 Score=58.65 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694 23 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 55 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s 55 (337)
..+++||||||||+++..+...+ +..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999998776655432 4455555443
No 412
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.61 E-value=0.048 Score=47.31 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+.-|+|.|.+|+|||+|+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45677779999999999999988753
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.59 E-value=0.041 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|++|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999999864
No 414
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.59 E-value=0.05 Score=45.49 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556899999999999999999875
No 415
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.57 E-value=0.031 Score=51.02 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
...+.|.||.|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998765
No 416
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.56 E-value=0.042 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 417
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.55 E-value=0.037 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.146 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
..-|++.|++|+|||+|..++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999854
No 418
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.53 E-value=0.036 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
++.-..+.|.||.|||||||.+.|+.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 344456889999999999999999864
No 419
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.52 E-value=0.04 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|..++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 420
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.51 E-value=0.039 Score=46.23 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
...-|++.|++|+|||+|.+.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 421
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.51 E-value=0.032 Score=51.74 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+....+.|.||.|+|||||.+.++...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344568899999999999999998764
No 422
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.50 E-value=0.043 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|..++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999764
No 423
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.076 Score=44.49 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
+...-|++.|++|+|||+|...+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999974
No 424
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.46 E-value=0.13 Score=46.42 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.-|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4588999999999999999975
No 425
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.45 E-value=0.044 Score=46.12 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|+|.|++|+|||+|...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999774
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.43 E-value=0.042 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|.+.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999764
No 427
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.42 E-value=0.13 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45789999999999999999763
No 428
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.41 E-value=0.043 Score=45.90 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..-|+|.|++|+|||+|.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999887654
No 429
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.39 E-value=0.033 Score=52.16 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
+++-..+.|.||.|+|||||++.++..+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34456789999999999999999987654
No 430
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.38 E-value=0.049 Score=51.20 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
-+|+||.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 479999999999999999999774 54443
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.32 E-value=0.049 Score=45.29 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 432
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.32 E-value=0.049 Score=45.15 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 433
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.05 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|+|.|++|+|||+|...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999999764
No 434
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.27 E-value=0.029 Score=47.96 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 18 IKVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 18 ~~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+....-+.|.|++|+|||+|.++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344456899999999999999988643
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.26 E-value=0.062 Score=51.06 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
..+.|.||+|+|||+|.+.++......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999998654
No 436
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.23 E-value=0.05 Score=57.18 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=18.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999977766544
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.18 E-value=0.052 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|.|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999864
No 438
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.17 E-value=0.052 Score=45.59 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999764
No 439
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.16 E-value=0.14 Score=46.18 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~ 44 (337)
-|.|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999754
No 440
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.15 E-value=0.044 Score=45.67 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 019694 23 ILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 23 giLL~GpPGtGKT~lA~aiA~~ 44 (337)
-|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998763
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.15 E-value=0.053 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|+|.|++|+|||+|..++...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999874
No 442
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.10 E-value=0.066 Score=52.55 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGIN 48 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~ 48 (337)
-.-+.|.||+|+|||+|.+.|+......
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3458899999999999999999987654
No 443
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.053 Score=45.72 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
...-|+|.|++|+|||+|...+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34568999999999999999998764
No 444
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.07 E-value=0.051 Score=46.09 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|+||+|||+|.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999873
No 445
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.05 E-value=0.046 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999874
No 446
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.04 E-value=0.056 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999764
No 447
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.04 E-value=0.05 Score=45.64 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVF 42 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA 42 (337)
+.+.-|++.|++|+|||+|..++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456779999999999999999884
No 448
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.02 E-value=0.056 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|+|.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45899999999999999998764
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.00 E-value=0.056 Score=45.86 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
...-|+|.|++|+|||+|..++....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999997653
No 450
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.00 E-value=0.044 Score=51.46 Aligned_cols=29 Identities=17% Similarity=-0.023 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGINPI 50 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i 50 (337)
.+||||.|++|+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 47999999999999999988754 455444
No 451
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.98 E-value=0.058 Score=45.13 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|++|+|||+|...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999764
No 452
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.95 E-value=0.062 Score=45.12 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|++|+|||+|..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998654
No 453
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.95 E-value=0.073 Score=43.96 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|++.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 454
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.94 E-value=0.05 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|+|.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999765
No 455
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.93 E-value=0.058 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|+|.|++|+|||+|...+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999888764
No 456
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.053 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
....++|.||.|+|||||+|.++...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34458899999999999999998754
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.90 E-value=0.056 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|+|.|++|+|||+|...+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999753
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.89 E-value=0.06 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999754
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.055 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
...-|+|.|++|+|||+|...+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999764
No 460
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.87 E-value=0.057 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.-..+.|.||.|+|||||.+.++.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 334568899999999999999998754
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.87 E-value=0.061 Score=45.26 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999764
No 462
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.85 E-value=0.062 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 463
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.82 E-value=0.063 Score=45.30 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|+|.|++|+|||+|.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999875
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.78 E-value=0.069 Score=44.53 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.+.-|++.|++|+|||+|...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999998754
No 465
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.74 E-value=0.061 Score=45.64 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998764
No 466
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.72 E-value=0.075 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
....-|+|.|++|+|||+|..++...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999754
No 467
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.71 E-value=0.077 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
...|.|.|+||+|||||..++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998754
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.67 E-value=0.062 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 469
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.65 E-value=0.062 Score=45.73 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|..++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999874
No 470
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.63 E-value=0.11 Score=45.02 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
-+..+++||+|+|||+.+-.++..+ |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678899999999998888777665 66666553
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.58 E-value=0.11 Score=49.53 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
....+++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 44578999999999999999987653 55555554
No 472
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.56 E-value=0.075 Score=46.17 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=24.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694 24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMS 53 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs 53 (337)
|.|-|+-|+||||+++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5678999999999999999876 66666554
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.56 E-value=0.083 Score=45.97 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMGI 47 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~~ 47 (337)
|...+|+||.|+|||++..||.--++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999999877654
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.54 E-value=0.082 Score=44.89 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.+.-|+|.|++|+|||+|...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999999754
No 475
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.48 E-value=0.067 Score=46.16 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|.+.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.41 E-value=0.075 Score=45.54 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..-|+|.|++|+|||+|...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998743
No 477
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.39 E-value=0.09 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999763
No 478
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.36 E-value=0.14 Score=47.69 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
..++|.|+.|+||||+.+.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 367899999999999999998754
No 479
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.32 E-value=0.15 Score=46.08 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=28.4
Q ss_pred CchhHHHH--HhhhhcCCCCC---CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 1 MDKLVVHI--TKNFMSLPNIK---VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 1 ~~k~~~~i--~k~~l~~~g~~---~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
||+++.-+ +.+.|...|.. ...-|.+.|.||+|||+|..++...
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 55555433 22334433332 2235889999999999999999754
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.31 E-value=0.083 Score=45.25 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..+.-|++.|++|+|||+|...+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999988764
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.31 E-value=0.073 Score=45.85 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|.+.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998764
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.29 E-value=0.044 Score=45.58 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=10.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
...-|+|.|++|+|||+|...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999988643
No 483
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.28 E-value=0.068 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 019694 24 LGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 24 iLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.|.||+|+|||||.++++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999865
No 484
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.25 E-value=0.083 Score=44.28 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.+.-|++.|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998754
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.23 E-value=0.074 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|+|.|++|+|||+|..++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 456899999999999999999764
No 486
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.22 E-value=0.1 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKM 45 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l 45 (337)
+.+++.+|+|+|||+++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999888776653
No 487
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.20 E-value=0.35 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|.|.|.||+|||+|..++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999764
No 488
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.16 E-value=0.078 Score=44.60 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.16 E-value=0.088 Score=44.65 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
+...-|++.|++|+|||+|...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455699999999999999999854
No 490
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.16 E-value=0.081 Score=49.06 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
...+.|.||+|+|||||.++++ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3568899999999999999998 543
No 491
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.06 E-value=0.084 Score=44.69 Aligned_cols=24 Identities=13% Similarity=-0.049 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 019694 20 VPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 20 ~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
...-|+|.|++|+|||+|...+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999864
No 492
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.05 E-value=0.076 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694 22 LILGIWGGKGQGKSFQCELVFAKMG 46 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~l~ 46 (337)
..+.|.||+|+|||||.++++....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4688999999999999999986543
No 493
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.04 E-value=0.081 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
+.-|++.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
No 494
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.01 E-value=0.096 Score=44.53 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|+|.|+||+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998753
No 495
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.98 E-value=0.082 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
+.-|+|.|++|+|||+|.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999999864
No 496
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.96 E-value=0.082 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~ 43 (337)
.-|+|.|++|+|||+|...+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999854
No 497
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.93 E-value=0.081 Score=45.10 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694 19 KVPLILGIWGGKGQGKSFQCELVFA 43 (337)
Q Consensus 19 ~~p~giLL~GpPGtGKT~lA~aiA~ 43 (337)
+.+.-|+|.|++|+|||+|.+.+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3456789999999999999999864
No 498
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.92 E-value=0.087 Score=45.24 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|+|.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998753
No 499
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.90 E-value=0.072 Score=44.44 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 019694 21 PLILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 21 p~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
..-|++.|++|+|||+|...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999754
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.90 E-value=0.087 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 019694 22 LILGIWGGKGQGKSFQCELVFAK 44 (337)
Q Consensus 22 ~giLL~GpPGtGKT~lA~aiA~~ 44 (337)
.-|++.|++|+|||+|...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
Done!