BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019695
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZ5|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZ5|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
Length = 413
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 251 KFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWA 310
K L+ +++G+ I GP D LV ++L P ++ VSE G E+ W
Sbjct: 121 KRLRPRAQEILDGLVDGILAEGPPAD--LVERVLEPFPIAVVSEVMGVPAADRERVHSWT 178
Query: 311 SAWVGESGGA 320
+ SGGA
Sbjct: 179 RQIISTSGGA 188
>pdb|2DKK|A Chain A, Structure/function Studies Of Cytochrome P450 158a1 From
Streptomyces Coelicolor A3(2)
Length = 411
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 251 KFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWA 310
K L+ +++G+ I GP D LV ++L P ++ VSE G E+ W
Sbjct: 121 KRLRPRAQEILDGLVDGILAEGPPAD--LVERVLEPFPIAVVSEVMGVPAADRERVHSWT 178
Query: 311 SAWVGESGGA 320
+ SGGA
Sbjct: 179 RQIISTSGGA 188
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 168 GAWDSNNARDFLKYTISM--GYQIDSWEYGNE--LSGRTSI-GASVDAELYGKDLINLKN 222
G NA D Y + ++ +++ GNE L R I AS D Y D
Sbjct: 142 GKGTPENAADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFT 201
Query: 223 IINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNL-VS 281
I + N+ P ++ +W F +V ++ H Y GP DP++ +
Sbjct: 202 AIRKRVPNAP----FAGPDTAYNTKWLVPFADKFKHDV-KFISSHYYAEGPPTDPSMTIE 256
Query: 282 KILNPQ-RLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSGGRHVSNTFVNSFW 337
+++ P RL + ET G LKQ G P+ + E+ Y G + VS+TF + W
Sbjct: 257 RLMKPNPRL--LGETAG-LKQVEADTGLPF---RLTETNSCYQGGKQGVSDTFAAALW 308
>pdb|3QYC|A Chain A, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
pdb|3QYC|B Chain B, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
Length = 146
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 19 LARDVTRVTIFVDATKTVATNDEHFICATV-DWWPHDKCNYNHCPWGNSSVINL 71
++RD ++ T+++ A + + C T+ D P D C Y WG +++ +
Sbjct: 72 ISRDNSKNTVYLQMNSLRAEDTAVYYCVTLPDLCPGDNCTYPDASWGQGTMVTV 125
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 261 VNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESG 318
+NG H+ L P D L+ + Q+ R+ + FG I GPW + E G
Sbjct: 576 INGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVI---GPWIQTKMEEIG 630
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 266 HHIYNLGPGVDPNLVSKILNPQRLSRVSET 295
H Y L PGVDP V+ L+P+ + + T
Sbjct: 57 HRRYRLPPGVDPAAVTSALSPEGVLSIQAT 86
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASA----WVGESGGAY 321
N+ +DP + KIL+ R + ETF L + I++ + A VG S G +
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASA----WVGESGGAY 321
N+ +DP + KIL+ R + ETF L + I++ + A VG S G +
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASA----WVGESGGAY 321
N+ +DP + KIL+ R + ETF L + I++ + A VG S G +
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEK 305
N+ +DP + KIL+ R + ETF L + I++
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDE 120
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 131 MQRWDELNQLFNRTRAIVSFGLNAL 155
MQ W +L L N +A+VS+G+N +
Sbjct: 67 MQNWHQLENLSNFIKAMVSYGMNPV 91
>pdb|3GFR|A Chain A, Structure Of Yhda, D137l Variant
pdb|3GFR|B Chain B, Structure Of Yhda, D137l Variant
pdb|3GFR|C Chain C, Structure Of Yhda, D137l Variant
pdb|3GFR|D Chain D, Structure Of Yhda, D137l Variant
Length = 174
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|3GFQ|A Chain A, Structure Of Yhda, K109l Variant
pdb|3GFQ|B Chain B, Structure Of Yhda, K109l Variant
pdb|3GFQ|C Chain C, Structure Of Yhda, K109l Variant
pdb|3GFQ|D Chain D, Structure Of Yhda, K109l Variant
Length = 174
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|3GFS|A Chain A, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|B Chain B, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|C Chain C, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|D Chain D, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|E Chain E, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|F Chain F, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|G Chain G, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|H Chain H, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|I Chain I, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|J Chain J, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|K Chain K, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|L Chain L, Structure Of Yhda, K109dD137K VARIANT
Length = 174
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|1NNI|1 Chain 1, Azobenzene Reductase From Bacillus Subtilis
Length = 174
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,870,663
Number of Sequences: 62578
Number of extensions: 462176
Number of successful extensions: 1462
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 19
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)