Query 019695
Match_columns 337
No_of_seqs 156 out of 392
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 3.3E-89 7.2E-94 634.8 -4.0 313 24-337 1-313 (319)
2 COG3534 AbfA Alpha-L-arabinofu 99.9 2.6E-25 5.6E-30 210.4 17.0 217 26-272 4-247 (501)
3 PF11790 Glyco_hydro_cc: Glyco 98.7 1.1E-07 2.5E-12 86.6 11.0 106 186-320 63-176 (239)
4 PF00150 Cellulase: Cellulase 98.5 3.4E-06 7.3E-11 77.8 14.8 218 74-324 22-251 (281)
5 PF01229 Glyco_hydro_39: Glyco 98.5 7.7E-07 1.7E-11 89.3 11.2 228 77-331 44-295 (486)
6 PF12891 Glyco_hydro_44: Glyco 98.3 1.5E-06 3.2E-11 78.1 7.5 94 174-271 105-237 (239)
7 PF07745 Glyco_hydro_53: Glyco 97.9 0.0003 6.5E-09 66.9 14.2 202 72-322 23-242 (332)
8 PF12876 Cellulase-like: Sugar 97.7 7.4E-05 1.6E-09 57.3 4.9 75 187-269 9-88 (88)
9 COG5520 O-Glycosyl hydrolase [ 96.8 0.0032 7E-08 59.4 6.5 86 177-270 157-246 (433)
10 PF14587 Glyco_hydr_30_2: O-Gl 95.9 0.094 2E-06 50.7 11.0 120 183-320 168-311 (384)
11 smart00633 Glyco_10 Glycosyl h 94.7 1.1 2.4E-05 41.0 13.9 69 129-201 13-86 (254)
12 PRK10150 beta-D-glucuronidase; 94.5 1.2 2.5E-05 46.2 15.0 67 188-271 408-474 (604)
13 PF02055 Glyco_hydro_30: O-Gly 94.4 0.16 3.5E-06 51.2 8.3 121 175-319 207-339 (496)
14 COG3867 Arabinogalactan endo-1 92.7 8.8 0.00019 36.0 19.6 169 135-322 107-288 (403)
15 PF00332 Glyco_hydro_17: Glyco 87.6 1.7 3.7E-05 41.2 6.8 196 74-324 14-242 (310)
16 COG5309 Exo-beta-1,3-glucanase 86.8 22 0.00048 32.9 13.0 78 135-227 90-168 (305)
17 PF02836 Glyco_hydro_2_C: Glyc 84.6 4.9 0.00011 37.5 8.3 81 135-230 62-151 (298)
18 COG3664 XynB Beta-xylosidase [ 76.6 17 0.00038 35.5 9.0 124 189-334 105-231 (428)
19 PF03198 Glyco_hydro_72: Gluca 76.6 30 0.00066 32.7 10.4 126 135-270 82-215 (314)
20 TIGR03356 BGL beta-galactosida 75.7 6.5 0.00014 39.0 6.1 100 79-201 60-165 (427)
21 PF14488 DUF4434: Domain of un 75.0 10 0.00022 32.5 6.4 94 132-240 65-161 (166)
22 PRK10340 ebgA cryptic beta-D-g 69.1 79 0.0017 35.2 13.0 81 135-230 381-469 (1021)
23 PF02449 Glyco_hydro_42: Beta- 55.7 64 0.0014 31.1 8.6 54 79-154 16-69 (374)
24 KOG4701 Chitinase [Cell wall/m 44.0 2.5E+02 0.0054 27.5 10.0 41 134-182 92-132 (568)
25 PRK15014 6-phospho-beta-glucos 42.4 62 0.0013 32.6 6.2 100 79-200 75-181 (477)
26 PRK10984 DNA-binding transcrip 40.7 27 0.00059 28.4 2.7 32 72-104 6-37 (127)
27 PF02449 Glyco_hydro_42: Beta- 40.2 32 0.00068 33.3 3.7 49 260-320 251-299 (374)
28 PRK15010 ABC transporter lysin 40.0 38 0.00082 30.5 4.0 48 3-50 5-55 (260)
29 PF12360 Pax7: Paired box prot 39.8 15 0.00032 24.1 0.8 20 315-334 3-27 (45)
30 PF07417 Crl: Transcriptional 37.4 21 0.00045 29.0 1.6 31 73-104 5-35 (125)
31 PF10566 Glyco_hydro_97: Glyco 34.1 92 0.002 29.0 5.5 64 128-192 28-92 (273)
32 TIGR01096 3A0103s03R lysine-ar 33.9 44 0.00096 29.5 3.4 49 2-50 2-53 (250)
33 PRK09852 cryptic 6-phospho-bet 33.7 86 0.0019 31.6 5.6 101 79-201 77-184 (474)
34 COG4124 ManB Beta-mannanase [C 33.2 1.4E+02 0.0031 28.8 6.6 113 191-322 183-300 (355)
35 PF01522 Polysacc_deac_1: Poly 32.7 1.4E+02 0.003 23.0 5.8 94 131-247 17-110 (123)
36 PRK09589 celA 6-phospho-beta-g 31.7 98 0.0021 31.2 5.7 66 132-201 108-180 (476)
37 PF11216 DUF3012: Protein of u 31.0 39 0.00084 20.6 1.6 17 167-183 15-31 (32)
38 COG2730 BglC Endoglucanase [Ca 30.7 3.6E+02 0.0079 26.4 9.5 68 133-200 117-193 (407)
39 PLN02849 beta-glucosidase 30.2 1E+02 0.0022 31.3 5.6 66 132-201 119-191 (503)
40 COG3117 Uncharacterized protei 30.0 64 0.0014 28.2 3.5 52 3-58 9-60 (188)
41 PLN02998 beta-glucosidase 25.8 1.3E+02 0.0028 30.6 5.4 66 132-201 122-194 (497)
42 PRK09525 lacZ beta-D-galactosi 25.6 6E+02 0.013 28.4 10.8 82 135-230 397-482 (1027)
43 TIGR01839 PHA_synth_II poly(R) 24.8 1.2E+02 0.0027 31.2 5.0 61 176-242 237-297 (560)
44 PRK15437 histidine ABC transpo 24.6 1.2E+02 0.0026 27.2 4.5 43 8-50 10-55 (259)
45 PRK13511 6-phospho-beta-galact 21.8 1.9E+02 0.0042 29.0 5.7 99 79-201 60-164 (469)
46 PRK09593 arb 6-phospho-beta-gl 21.6 2.2E+02 0.0048 28.7 6.1 66 132-201 114-186 (478)
47 TIGR00216 ispH_lytB (E)-4-hydr 21.5 1.9E+02 0.0042 27.0 5.3 52 130-198 195-246 (280)
48 PLN02814 beta-glucosidase 20.9 2E+02 0.0042 29.3 5.6 66 132-201 117-189 (504)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=3.3e-89 Score=634.76 Aligned_cols=313 Identities=54% Similarity=1.055 Sum_probs=151.5
Q ss_pred eeEEEEecCCCcccccCCCeEEEEeccCCCCccCCCCCCCCCcccccCCCCCHHHHHHHHHcCCceEeecccccceeeec
Q 019695 24 TRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYD 103 (337)
Q Consensus 24 ~~~~v~v~~~~~i~~i~~~f~s~~ie~~p~~~~~y~~~~~~~~~~~~~~l~~~~L~~l~k~l~p~~lRiGG~~~D~~~y~ 103 (337)
+.++|.|+..++|+++|++|+|+|+||||++||+|++|+||+++++|+||+|++|++++|+|+|.+|||||+.||+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~ 80 (319)
T PF03662_consen 1 EDGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYD 80 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH
Q 019695 104 VGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI 183 (337)
Q Consensus 104 ~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~ 183 (337)
.+...++|.|+.++++.+|||+++||++++||+|++|++++|+++|||||++.||+...++++.|.||++||+.|++|++
T Consensus 81 ~~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~ 160 (319)
T PF03662_consen 81 TGDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTA 160 (319)
T ss_dssp -------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEE
T ss_pred ccccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHH
Confidence 99888899999888899999999999999999999999999999999999999875443445669999999999999999
Q ss_pred HcCCccceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhCCCccce
Q 019695 184 SMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNG 263 (337)
Q Consensus 184 ~~g~~l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~~~~id~ 263 (337)
+|||+|++|||||||+++ +++.++++.||++|+.+||++|+++|+++.++|+|+||+++++.+|+++||++.+++.||+
T Consensus 161 skgy~I~~WELGNEl~g~-g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~ 239 (319)
T PF03662_consen 161 SKGYNIDSWELGNELNGS-GVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDA 239 (319)
T ss_dssp SS-GGG--------HHHH-SSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SE
T ss_pred HcCCCccccccccccCCC-CCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCE
Confidence 999999999999999996 8899999999999999999999999998889999999999889999999999988756999
Q ss_pred EEEeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccccCCCCCCCCcchhhhhcCC
Q 019695 264 VTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFW 337 (337)
Q Consensus 264 vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~sa~~~G~~gvSdtF~aalW 337 (337)
||||+|++++|+++++.+++++|.+||.+..+++.+++++++++|++++|||||++||+||+++|||||+++||
T Consensus 240 vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~Fw 313 (319)
T PF03662_consen 240 VTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFW 313 (319)
T ss_dssp EEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHH
T ss_pred EEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999998
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=210.40 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=174.6
Q ss_pred EEEEecCCCcccccCCCeEEEEeccCCCCccCCCCCCCCCcccccCC-CCCHHHHHHHHHcCCceEe-ecccccceeeec
Q 019695 26 VTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLD-LSHPLLANAIQAFQSLRIR-IGGSLQDQVLYD 103 (337)
Q Consensus 26 ~~v~v~~~~~i~~i~~~f~s~~ie~~p~~~~~y~~~~~~~~~~~~~~-l~~~~L~~l~k~l~p~~lR-iGG~~~D~~~y~ 103 (337)
.++.|+.+..|..|+.+++|..+|+. ++|.|.+.+.+...+++.+ |+. .++.++|.|.+|+|| +|||+.|-++|.
T Consensus 4 a~~~v~~d~~ig~I~k~iYG~F~EHl--Gr~vY~Giyepd~p~~d~~G~Rk-DVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 4 ARAVVDTDYTIGKIDKRIYGHFIEHL--GRAVYEGIYEPDSPIADERGFRK-DVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred cceeechhhccCcchhhhhhHHHHhh--ccceeeeeecCCCCCcchhhhHH-HHHHHHHhcCCceeecCCcccccccccc
Confidence 46789999999999999999999987 8999999998876677777 665 588999999999999 699999999999
Q ss_pred CCCCCCCCCCCcc------CCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHH
Q 019695 104 VGDLKAPCHPFRK------MKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARD 177 (337)
Q Consensus 104 ~~~~~~~~~p~~~------~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~ 177 (337)
++..+...+|... .+++.|| +++|++||+.+|+++++.+|++.+ ..++|++
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~G----------t~EF~~~~e~iGaep~~avN~Gsr-------------gvd~ar~ 137 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFG----------THEFMDWCELIGAEPYIAVNLGSR-------------GVDEARN 137 (501)
T ss_pred cCcCchhhCchhhccccccccccccc----------HHHHHHHHHHhCCceEEEEecCCc-------------cHHHHHH
Confidence 9998766666432 4677888 799999999999999999999986 3579999
Q ss_pred HHHHHH----------------HcCCccceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCC
Q 019695 178 FLKYTI----------------SMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPG 241 (337)
Q Consensus 178 lv~y~~----------------~~g~~l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~ 241 (337)
||+||. ++.++|.+|.||||.|+.+++|+. ++.+|++-..+++++++=+.+.+ +..+.|.+
T Consensus 138 ~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~-~a~EY~~~A~e~~k~~k~~d~t~--e~~v~g~a 214 (501)
T COG3534 138 WVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHK-TAPEYGRLANEYRKYMKYFDPTI--ENVVCGSA 214 (501)
T ss_pred HHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccc-cCHHHHHHHHHHHHHHhhcCccc--cceEEeec
Confidence 999983 346789999999999998777755 45566555555566665454443 22344433
Q ss_pred C---CCCHHHHHHHHhhhCCCccceEEEeecCCC
Q 019695 242 G---FFDQEWYAKFLQVSGSNVVNGVTHHIYNLG 272 (337)
Q Consensus 242 ~---~~~~~w~~~fl~~~~~~~id~vS~H~Y~~~ 272 (337)
+ ..++.|...+|.+.... ||++|+|+|..+
T Consensus 215 ~~~n~~~~~W~~~vl~~~~e~-vD~ISlH~Y~Gn 247 (501)
T COG3534 215 NGANPTDPNWEAVVLEEAYER-VDYISLHYYKGN 247 (501)
T ss_pred CCCCCCchHHHHHHHHHHhhh-cCeEEEEEecCc
Confidence 2 34689999999888875 999999999643
No 3
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.71 E-value=1.1e-07 Score=86.62 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=75.7
Q ss_pred CCccceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCC-------CHHHHHHHHhhhC-
Q 019695 186 GYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFF-------DQEWYAKFLQVSG- 257 (337)
Q Consensus 186 g~~l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~-------~~~w~~~fl~~~~- 257 (337)
.....++..-||||... ...++++++++.|+++.+.++. .+.+|++|+... ..+|+++|++...
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~------~~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~ 134 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRS------PGVKLGSPAVAFTNGGTPGGLDWLSQFLSACAR 134 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhc------CCcEEECCeecccCCCCCCccHHHHHHHHhccc
Confidence 45677888889999973 5789999999999998887762 345899999832 2469999998865
Q ss_pred CCccceEEEeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccccC
Q 019695 258 SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGA 320 (337)
Q Consensus 258 ~~~id~vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~sa 320 (337)
...||.+++|.|. .+ .+.+.+.+ .++.++++ +|+||+|.+-.
T Consensus 135 ~~~~D~iavH~Y~----~~------------~~~~~~~i---~~~~~~~~--kPIWITEf~~~ 176 (239)
T PF11790_consen 135 GCRVDFIAVHWYG----GD------------ADDFKDYI---DDLHNRYG--KPIWITEFGCW 176 (239)
T ss_pred CCCccEEEEecCC----cC------------HHHHHHHH---HHHHHHhC--CCEEEEeeccc
Confidence 3369999999992 11 11222222 22334555 99999999853
No 4
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.50 E-value=3.4e-06 Score=77.79 Aligned_cols=218 Identities=16% Similarity=0.090 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEee
Q 019695 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (337)
Q Consensus 74 ~~~~L~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN 153 (337)
..+.....++++|--.|||-=. |..-..+.+ +... ..-.-.+++++.+.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~~~~--------~~~~----~~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQEPNP--------GYNY----DETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTSTTST--------TTSB----THHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcCCCC--------Cccc----cHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4456677889999889996322 211110000 0000 011235577888899999999999998
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHH----HHHHH-H--cCCccceeeecccccCCCCCCCCC---CHHHHHHHHHHHHHH
Q 019695 154 ALHGRHNIRHNAWGGAWDSNNARDF----LKYTI-S--MGYQIDSWEYGNELSGRTSIGASV---DAELYGKDLINLKNI 223 (337)
Q Consensus 154 ~~~g~~~~~~~~~~g~w~~~~A~~l----v~y~~-~--~g~~l~~wElGNEpd~~~~~~~~~---~~~~Ya~d~~~~~~~ 223 (337)
...+=....+ .........+. ++... . ....+.+|||.|||+.. .....| +...|.+-+.+..+.
T Consensus 84 ~~~~w~~~~~----~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-~~~~~w~~~~~~~~~~~~~~~~~~ 158 (281)
T PF00150_consen 84 NAPGWANGGD----GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG-NDDANWNAQNPADWQDWYQRAIDA 158 (281)
T ss_dssp ESTTCSSSTS----TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST-TSTTTTSHHHTHHHHHHHHHHHHH
T ss_pred cCcccccccc----ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc-CCccccccccchhhhhHHHHHHHH
Confidence 6411000000 11122222222 22221 1 23457799999999986 211123 456677777888888
Q ss_pred HHHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhC--CCccceEEEeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHH
Q 019695 224 INELYKNSSSKPTILAPGGFFDQEWYAKFLQVSG--SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQ 301 (337)
Q Consensus 224 i~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~--~~~id~vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~ 301 (337)
|+++.++. +.++++.... ......+.+ .+ ....++++.|.|.... ......-............++.+.+
T Consensus 159 Ir~~~~~~---~i~~~~~~~~-~~~~~~~~~-~P~~~~~~~~~~~H~Y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
T PF00150_consen 159 IRAADPNH---LIIVGGGGWG-ADPDGAAAD-NPNDADNNDVYSFHFYDPYD---FSDQWNPGNWGDASALESSFRAALN 230 (281)
T ss_dssp HHHTTSSS---EEEEEEHHHH-TBHHHHHHH-STTTTTTSEEEEEEEETTTC---HHTTTSTCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcc---eeecCCCccc-cccchhhhc-CcccccCceeEEeeEeCCCC---cCCccccccchhhhHHHHHHHHHHH
Confidence 88886652 3344432211 111111111 21 1147899999997321 1000000011111222334444444
Q ss_pred HHHHhCCCCceEEcccccCCCCC
Q 019695 302 TIEKHGPWASAWVGESGGAYNSG 324 (337)
Q Consensus 302 ~~~~~~~~~~~wlgEt~sa~~~G 324 (337)
.+.+ .++|+|+||.+.....+
T Consensus 231 ~~~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 231 WAKK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHH--TTSEEEEEEEESSTTTS
T ss_pred HHHH--cCCeEEEeCcCCcCCCC
Confidence 3433 35899999999886554
No 5
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.50 E-value=7.7e-07 Score=89.34 Aligned_cols=228 Identities=14% Similarity=0.164 Sum_probs=117.6
Q ss_pred HHHHHHHHcCCceEeecccccceee-ecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecC
Q 019695 77 LLANAIQAFQSLRIRIGGSLQDQVL-YDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNAL 155 (337)
Q Consensus 77 ~L~~l~k~l~p~~lRiGG~~~D~~~-y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~ 155 (337)
.|+.+.+.+|--+||+=|-..|-+. +.... +++. ....=+..|++.+|..+.|+++.+-|-..
T Consensus 44 ~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~-----------~~~~-----~~Ynf~~lD~i~D~l~~~g~~P~vel~f~ 107 (486)
T PF01229_consen 44 QLRELQEELGFRYVRFHGLFSDDMMVYSESD-----------EDGI-----PPYNFTYLDQILDFLLENGLKPFVELGFM 107 (486)
T ss_dssp HHHHHHCCS--SEEEES-TTSTTTT-EEEEE-----------TTEE-----EEE--HHHHHHHHHHHHCT-EEEEEE-SB
T ss_pred HHHHHHhccCceEEEEEeeccCchhhccccc-----------cCCC-----CcCChHHHHHHHHHHHHcCCEEEEEEEec
Confidence 4555556677789999887766443 22200 0000 01344678999999999999999888643
Q ss_pred CCCcccCCCCC-CCCCC-----hHH-------HHHHHHHHHHc-CC-cc--ceeeecccccCCCCCCCCCCHHHHHHHHH
Q 019695 156 HGRHNIRHNAW-GGAWD-----SNN-------ARDFLKYTISM-GY-QI--DSWEYGNELSGRTSIGASVDAELYGKDLI 218 (337)
Q Consensus 156 ~g~~~~~~~~~-~g~w~-----~~~-------A~~lv~y~~~~-g~-~l--~~wElGNEpd~~~~~~~~~~~~~Ya~d~~ 218 (337)
... .+.+.. .-.|. |.. ..++++....+ |. .| -.||+-||||+. .....-+.++|.+-|+
T Consensus 108 p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~-~f~~~~~~~ey~~ly~ 184 (486)
T PF01229_consen 108 PMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK-DFWWDGTPEEYFELYD 184 (486)
T ss_dssp -GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST-TTSGGG-HHHHHHHHH
T ss_pred hhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc-cccCCCCHHHHHHHHH
Confidence 321 111100 01111 112 23333333221 21 23 367999999996 2222236778999999
Q ss_pred HHHHHHHHHhcCCCCCCeEecCCCCC-CHHHHHHHHhhh---CCCccceEEEeecCCCCCCCh-hhhhccCChHHHHhHH
Q 019695 219 NLKNIINELYKNSSSKPTILAPGGFF-DQEWYAKFLQVS---GSNVVNGVTHHIYNLGPGVDP-NLVSKILNPQRLSRVS 293 (337)
Q Consensus 219 ~~~~~i~~~~~~~~~~p~l~gP~~~~-~~~w~~~fl~~~---~~~~id~vS~H~Y~~~~g~~~-~~~~~~l~~~~l~~~~ 293 (337)
...+.||++.|.. +|.||+... ...|+.+|++-. .. .+|.+|+|.|+.+.+.+. ......+.. .+...
T Consensus 185 ~~~~~iK~~~p~~----~vGGp~~~~~~~~~~~~~l~~~~~~~~-~~DfiS~H~y~~~~~~~~~~~~~~~~~~--~~~~~ 257 (486)
T PF01229_consen 185 ATARAIKAVDPEL----KVGGPAFAWAYDEWCEDFLEFCKGNNC-PLDFISFHSYGTDSAEDINENMYERIED--SRRLF 257 (486)
T ss_dssp HHHHHHHHH-TTS----EEEEEEEETT-THHHHHHHHHHHHCT----SEEEEEEE-BESESE-SS-EEEEB----HHHHH
T ss_pred HHHHHHHHhCCCC----cccCccccccHHHHHHHHHHHHhcCCC-CCCEEEEEecccccccccchhHHhhhhh--HHHHH
Confidence 9999999998764 899995432 346888887532 32 589999999975422110 111111111 23333
Q ss_pred HHHHHHHHHHH-HhCCCCceEEcccccCCCCCCCCcchh
Q 019695 294 ETFGNLKQTIE-KHGPWASAWVGESGGAYNSGGRHVSNT 331 (337)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~~wlgEt~sa~~~G~~gvSdt 331 (337)
.+++.+.+++. +..|..|+.++|-|+.... ...+-|+
T Consensus 258 ~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~-~~~~~dt 295 (486)
T PF01229_consen 258 PELKETRPIINDEADPNLPLYITEWNASISP-RNPQHDT 295 (486)
T ss_dssp HHHHHHHHHHHTSSSTT--EEEEEEES-SST-T-GGGGS
T ss_pred HHHHHHHHHHhhccCCCCceeecccccccCC-Ccchhcc
Confidence 45556545554 4567889999998776542 2344443
No 6
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.33 E-value=1.5e-06 Score=78.13 Aligned_cols=94 Identities=13% Similarity=0.244 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHc------CCccceeeecccccCCC--C--C-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCC
Q 019695 174 NARDFLKYTISM------GYQIDSWEYGNELSGRT--S--I-GASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGG 242 (337)
Q Consensus 174 ~A~~lv~y~~~~------g~~l~~wElGNEpd~~~--~--~-~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~ 242 (337)
=..+||.|.+.+ ...|.+|.|.|||+++. + + +..++.+++..-+.+++++||+++|.+ +++||..
T Consensus 105 y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a----~v~GP~~ 180 (239)
T PF12891_consen 105 YMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDA----KVFGPVE 180 (239)
T ss_dssp EHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTS----EEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC----eEeechh
Confidence 356777776543 56799999999999983 2 2 778999999999999999999999876 9999986
Q ss_pred CC---------C------------HHHHHHHHh-------hhCCCccceEEEeecCC
Q 019695 243 FF---------D------------QEWYAKFLQ-------VSGSNVVNGVTHHIYNL 271 (337)
Q Consensus 243 ~~---------~------------~~w~~~fl~-------~~~~~~id~vS~H~Y~~ 271 (337)
.. + ..|+.=||+ +.|.+.+|++.+|+|+.
T Consensus 181 wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 181 WGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp -SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 32 1 114444554 24656899999999985
No 7
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.90 E-value=0.0003 Score=66.94 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEE
Q 019695 72 DLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFG 151 (337)
Q Consensus 72 ~l~~~~L~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifg 151 (337)
+-..+.+..++|..|--.||+ | +|..... .+.-+.++..++.+=+++.|.++++.
T Consensus 23 ~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~~------------------~g~~~~~~~~~~akrak~~Gm~vlld 77 (332)
T PF07745_consen 23 NGQEKDLFQILKDHGVNAVRL------R-VWVNPYD------------------GGYNDLEDVIALAKRAKAAGMKVLLD 77 (332)
T ss_dssp TSSB--HHHHHHHTT--EEEE------E-E-SS-TT------------------TTTTSHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCCHHHHHHhcCCCeEEE------E-eccCCcc------------------cccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 334456788888888766665 1 2322110 01234455666777788899999988
Q ss_pred eecCC-----CCcccCCCCCCCCCChH----HHHHHHHHH-------HHcCCccceeeecccccCC--CCCCCCCCHHHH
Q 019695 152 LNALH-----GRHNIRHNAWGGAWDSN----NARDFLKYT-------ISMGYQIDSWEYGNELSGR--TSIGASVDAELY 213 (337)
Q Consensus 152 lN~~~-----g~~~~~~~~~~g~w~~~----~A~~lv~y~-------~~~g~~l~~wElGNEpd~~--~~~~~~~~~~~Y 213 (337)
+-... ++...+ ..|... -+.++-+|+ +..|....-.|||||.+.- ...+..-+..++
T Consensus 78 fHYSD~WaDPg~Q~~P-----~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~ 152 (332)
T PF07745_consen 78 FHYSDFWADPGKQNKP-----AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNL 152 (332)
T ss_dssp E-SSSS--BTTB-B-------TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHH
T ss_pred ecccCCCCCCCCCCCC-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHH
Confidence 86522 221222 346542 233444554 3468889999999999863 223455666777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhCCCccceEEEeecCCCCCCChhhhhccCChHHHHhHH
Q 019695 214 GKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVS 293 (337)
Q Consensus 214 a~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~~~~id~vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~ 293 (337)
++-+..-.++||+..|++....-+..|+......|+-+.|.+.+.+ .|++..++||.-.+ .++.+.
T Consensus 153 a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d-~DviGlSyYP~w~~-------------~l~~l~ 218 (332)
T PF07745_consen 153 AKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVD-FDVIGLSYYPFWHG-------------TLEDLK 218 (332)
T ss_dssp HHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG--SEEEEEE-STTST--------------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCC-cceEEEecCCCCcc-------------hHHHHH
Confidence 7777777788887765532111111222211123444445556654 89999999985422 133332
Q ss_pred HHHHHHHHHHHHhCCCCceEEcccccCCC
Q 019695 294 ETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (337)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~wlgEt~sa~~ 322 (337)
..+..+.++++ +|+++.||+-.+.
T Consensus 219 ---~~l~~l~~ry~--K~V~V~Et~yp~t 242 (332)
T PF07745_consen 219 ---NNLNDLASRYG--KPVMVVETGYPWT 242 (332)
T ss_dssp ---HHHHHHHHHHT---EEEEEEE---SB
T ss_pred ---HHHHHHHHHhC--CeeEEEecccccc
Confidence 33444557775 9999999996554
No 8
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.66 E-value=7.4e-05 Score=57.28 Aligned_cols=75 Identities=20% Similarity=0.117 Sum_probs=40.0
Q ss_pred CccceeeecccccCCCC--C---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhCCCcc
Q 019695 187 YQIDSWEYGNELSGRTS--I---GASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVV 261 (337)
Q Consensus 187 ~~l~~wElGNEpd~~~~--~---~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~~~~i 261 (337)
.+|.+|||+|||++... . ......+.|.+-.++..++|+++.|.. |..+|- ...+... ++......+
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~-~~~~~~~----~~~~~~~~~ 80 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGF-WGGDWED----LEQLQAENL 80 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B---S-TTH----HHHS--TT-
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeec-ccCCHHH----HHHhchhcC
Confidence 46889999999444312 1 123356778777888899999888764 333332 2222112 333331259
Q ss_pred ceEEEeec
Q 019695 262 NGVTHHIY 269 (337)
Q Consensus 262 d~vS~H~Y 269 (337)
|.+|+|.|
T Consensus 81 DvisfH~Y 88 (88)
T PF12876_consen 81 DVISFHPY 88 (88)
T ss_dssp SSEEB-EE
T ss_pred CEEeeecC
Confidence 99999998
No 9
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.0032 Score=59.41 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCccceeeecccccCCCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCCC-HHHHHHHHh
Q 019695 177 DFLKYTISMGYQIDSWEYGNELSGRTSI-GASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFD-QEWYAKFLQ 254 (337)
Q Consensus 177 ~lv~y~~~~g~~l~~wElGNEpd~~~~~-~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~-~~w~~~fl~ 254 (337)
+.|.|.+..|.++++.-+=||||.-+-. ++.|++++..+=++++..-+ ....+|+-|+.+.+ +.|....|+
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si-------~~~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASI-------NAEMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhh-------ccccEEecchhccccccccccccc
Confidence 3444456789999999999999986322 67899987655544443332 23458899998654 455555554
Q ss_pred --hhCCCccceEEEeecC
Q 019695 255 --VSGSNVVNGVTHHIYN 270 (337)
Q Consensus 255 --~~~~~~id~vS~H~Y~ 270 (337)
+... .|+.+.+|.|.
T Consensus 230 Dp~a~a-~~~ilg~H~Yg 246 (433)
T COG5520 230 DPKALA-NMDILGTHLYG 246 (433)
T ss_pred CHhHhc-ccceeEeeecc
Confidence 1233 49999999994
No 10
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=95.85 E-value=0.094 Score=50.70 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=61.0
Q ss_pred HHcCCccceeeecccccCCC----CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCC-----CC--------
Q 019695 183 ISMGYQIDSWEYGNELSGRT----SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGF-----FD-------- 245 (337)
Q Consensus 183 ~~~g~~l~~wElGNEpd~~~----~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~-----~~-------- 245 (337)
++.|.++.+.+.=|||+... +-|+.++.++-++=.+.|++.|++.-.. .+|+.++.. +.
T Consensus 168 ~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~----t~I~~~Ea~~~~~l~~~~~~~~~r 243 (384)
T PF14587_consen 168 KKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLS----TKISACEAGDWEYLYKTDKNDWGR 243 (384)
T ss_dssp HCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-----EEEEEEESSGGGGS---S-TTS-
T ss_pred HhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC----ceEEecchhhHHHHhhccCCchhh
Confidence 45689999999999999662 2278899988888888888888876322 255555532 11
Q ss_pred HHHHHHHHhhhCC-------CccceEEEeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccc
Q 019695 246 QEWYAKFLQVSGS-------NVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESG 318 (337)
Q Consensus 246 ~~w~~~fl~~~~~-------~~id~vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~ 318 (337)
..-+..|++.... +.-+.++-|.|.... + .+.+.+.=+.+.+.++++.|+.++|.+|..
T Consensus 244 ~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~---~-----------~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~ 309 (384)
T PF14587_consen 244 GNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDS---P-----------WDDLRDIRKQLADKLDKYSPGLKYWQTEYC 309 (384)
T ss_dssp --HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SS---S-----------HHHHHHHHHHHHHHHHTTSS--EEEE----
T ss_pred hhhHHhhcCCCchhhhhccccchhheeecccccCC---C-----------HHHHHHHHHHHHHHHHhhCcCCceeeeeee
Confidence 1235566654321 234789999997541 1 123333334556677888899999999976
Q ss_pred cC
Q 019695 319 GA 320 (337)
Q Consensus 319 sa 320 (337)
-.
T Consensus 310 il 311 (384)
T PF14587_consen 310 IL 311 (384)
T ss_dssp S-
T ss_pred ec
Confidence 54
No 11
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.66 E-value=1.1 Score=40.95 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=39.9
Q ss_pred echHHHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChH-HHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 129 LHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSN-NARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 129 lt~~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~-~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
..-+..|++.++|++.|.++-... +.-.. +.+ .|-...... ....+.+|.. ..+.+|..|++.|||...
T Consensus 13 ~n~~~~D~~~~~a~~~gi~v~gH~-l~W~~-~~P--~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~ 86 (254)
T smart00633 13 FNFSGADAIVNFAKENGIKVRGHT-LVWHS-QTP--DWVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEALHD 86 (254)
T ss_pred cChHHHHHHHHHHHHCCCEEEEEE-Eeecc-cCC--HhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeecccC
Confidence 455678999999999999985432 11111 112 111111122 2334455542 335669999999999875
No 12
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.45 E-value=1.2 Score=46.20 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=36.4
Q ss_pred ccceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhCCCccceEEEe
Q 019695 188 QIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHH 267 (337)
Q Consensus 188 ~l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~~~~id~vS~H 267 (337)
.|..|.+|||+... ......-++++.+++++.+|. +|...+-...... . ...... .+|.+++|
T Consensus 408 SIi~Ws~gNE~~~~--------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~~--~---~~~~~~-~~Dv~~~N 470 (604)
T PRK10150 408 SVVMWSIANEPASR--------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFATP--D---TDTVSD-LVDVLCLN 470 (604)
T ss_pred eEEEEeeccCCCcc--------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCCc--c---cccccC-cccEEEEc
Confidence 37799999998542 111223346778888888765 3332221100000 0 011122 58999999
Q ss_pred ecCC
Q 019695 268 IYNL 271 (337)
Q Consensus 268 ~Y~~ 271 (337)
.|+.
T Consensus 471 ~Y~~ 474 (604)
T PRK10150 471 RYYG 474 (604)
T ss_pred ccce
Confidence 8863
No 13
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=94.43 E-value=0.16 Score=51.24 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=68.8
Q ss_pred HHHHHHHHH---HcCCccceeeecccccCC----CCC-CCCCCHHHHHHHHHH-HHHHHHHHhcCCCCCCeEecCC-CC-
Q 019695 175 ARDFLKYTI---SMGYQIDSWEYGNELSGR----TSI-GASVDAELYGKDLIN-LKNIINELYKNSSSKPTILAPG-GF- 243 (337)
Q Consensus 175 A~~lv~y~~---~~g~~l~~wElGNEpd~~----~~~-~~~~~~~~Ya~d~~~-~~~~i~~~~~~~~~~p~l~gP~-~~- 243 (337)
|.-++||.. ++|.+|++.-+.|||+.. ... ...|++++-+.=.+. |.-.|++.-. ..+.+|+.-+ ..
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~--g~d~kI~~~D~n~~ 284 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGL--GKDVKILIYDHNRD 284 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCC--CCceEEEEEecCCc
Confidence 556666643 579999999999999963 122 467888766332222 5666655421 0245776544 22
Q ss_pred CCHHHHHHHHhhh-CCCccceEEEeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEccccc
Q 019695 244 FDQEWYAKFLQVS-GSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGG 319 (337)
Q Consensus 244 ~~~~w~~~fl~~~-~~~~id~vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~s 319 (337)
..++|...+|+.. ..+.||.+.+|.|... + .+..|+ .+.+..|++.+|.+|+..
T Consensus 285 ~~~~~~~~il~d~~A~~yv~GiA~HwY~g~----~-------~~~~l~-----------~~h~~~P~k~l~~TE~~~ 339 (496)
T PF02055_consen 285 NLPDYADTILNDPEAAKYVDGIAFHWYGGD----P-------SPQALD-----------QVHNKFPDKFLLFTEACC 339 (496)
T ss_dssp GTTHHHHHHHTSHHHHTTEEEEEEEETTCS------------HCHHHH-----------HHHHHSTTSEEEEEEEES
T ss_pred ccchhhhhhhcChhhHhheeEEEEECCCCC----c-------hhhHHH-----------HHHHHCCCcEEEeecccc
Confidence 2367888888632 2237999999999421 1 111122 124557889999999854
No 14
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.71 E-value=8.8 Score=36.04 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHH----HHHHHHH-------HHcCCccceeeecccccCCC-
Q 019695 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNA----RDFLKYT-------ISMGYQIDSWEYGNELSGRT- 202 (337)
Q Consensus 135 ~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A----~~lv~y~-------~~~g~~l~~wElGNEpd~~~- 202 (337)
-++..=++..|.+++..+-...-=.+.....--..|..-+- +++-+|+ ++.|.-+.--|+|||-++-.
T Consensus 107 ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gfl 186 (403)
T COG3867 107 IEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFL 186 (403)
T ss_pred HHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCcee
Confidence 34555667779999988754321000000011133543221 1233443 34678888899999998631
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhCCCccceEEEeecCCCCCCChhhhh
Q 019695 203 -SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVS 281 (337)
Q Consensus 203 -~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~~~~id~vS~H~Y~~~~g~~~~~~~ 281 (337)
..|..-+-.-.++-+.+-.+++++..|+++.-.-+.-|....-..|.-+-|.+...+ .|++..-+||.--|.
T Consensus 187 wp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvd-fDVig~SyYpyWhgt------ 259 (403)
T COG3867 187 WPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVD-FDVIGSSYYPYWHGT------ 259 (403)
T ss_pred ccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCC-ceEEeeeccccccCc------
Confidence 112111222333333333444444444332111222344333345655556566654 789988899754221
Q ss_pred ccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccccCCC
Q 019695 282 KILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (337)
Q Consensus 282 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~sa~~ 322 (337)
|..+. ..+.++.++|. +.+.+-||+-.|.
T Consensus 260 -------l~nL~---~nl~dia~rY~--K~VmV~Etay~yT 288 (403)
T COG3867 260 -------LNNLT---TNLNDIASRYH--KDVMVVETAYTYT 288 (403)
T ss_pred -------HHHHH---hHHHHHHHHhc--CeEEEEEecceee
Confidence 22211 23344556776 7789999988664
No 15
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=87.64 E-value=1.7 Score=41.23 Aligned_cols=196 Identities=19% Similarity=0.217 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEee
Q 019695 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (337)
Q Consensus 74 ~~~~L~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN 153 (337)
+-...++|.|..+-..+|+ |++. -+.+..|+ .+|.+++.++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~----------------------------~~iL~a~a-~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD----------------------------PSILRAFA-GSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS------------------------------HHHHHHHT-TS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc----------------------------HHHHHHHh-cCCceeeeccC
Confidence 5567888888888777775 3221 13333444 58999999885
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHHHHHHHH---cCCccceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 019695 154 ALHGRHNIRHNAWGGAWDSNNARDFLKYTIS---MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKN 230 (337)
Q Consensus 154 ~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~~---~g~~l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~~~~ 230 (337)
-..-. .... +...|..|++--.. ..-+|.+.-+|||.-.. ........-.+.+++++.+.-
T Consensus 56 N~~l~-~la~-------~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~------~~~~~lvpAm~ni~~aL~~~~-- 119 (310)
T PF00332_consen 56 NEDLA-SLAS-------SQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG------TDNAYLVPAMQNIHNALTAAG-- 119 (310)
T ss_dssp GGGHH-HHHH-------HHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC------SGGGGHHHHHHHHHHHHHHTT--
T ss_pred hHHHH-Hhcc-------CHHHHhhhhhhcccccCcccceeeeecccccccC------ccceeeccHHHHHHHHHHhcC--
Confidence 11100 0000 12456667663222 12469999999998654 111145666777888886641
Q ss_pred CCCCCeEecC------------C-CCCCHHH------HHHHHhhhCCC-ccceEEEeecCCCCCCChhhhhccC------
Q 019695 231 SSSKPTILAP------------G-GFFDQEW------YAKFLQVSGSN-VVNGVTHHIYNLGPGVDPNLVSKIL------ 284 (337)
Q Consensus 231 ~~~~p~l~gP------------~-~~~~~~w------~~~fl~~~~~~-~id~vS~H~Y~~~~g~~~~~~~~~l------ 284 (337)
...+.++..| . +.+...+ +.+||+..+.. .+..+.++-|..++..-+ +-..+.
T Consensus 120 L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~-l~yAlf~~~~~~ 198 (310)
T PF00332_consen 120 LSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNIS-LDYALFQPNSGV 198 (310)
T ss_dssp -TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS--HHHHTT-SSS-S
T ss_pred cCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCC-cccccccccccc
Confidence 1224455432 2 1223333 55778776643 223333333322211100 000000
Q ss_pred -Ch--HHHHhHHHHHHHHHHHHHHhC-CCCceEEcccccCCCCC
Q 019695 285 -NP--QRLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSG 324 (337)
Q Consensus 285 -~~--~~l~~~~~~~~~~~~~~~~~~-~~~~~wlgEt~sa~~~G 324 (337)
|+ .|-..+..+++.+..++.+.+ +++++|+||||-...|+
T Consensus 199 ~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 199 VDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp EETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 11 111222345666666666654 57899999999887655
No 16
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=86.81 E-value=22 Score=32.91 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcC-CccceeeecccccCCCCCCCCCCHHHH
Q 019695 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMG-YQIDSWEYGNELSGRTSIGASVDAELY 213 (337)
Q Consensus 135 ~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~~~g-~~l~~wElGNEpd~~~~~~~~~~~~~Y 213 (337)
+.+..-+.+.|.+++.|+=...- ...+. +-..+..|-...+ ..|..+-+|||.=.. ...++.|.
T Consensus 90 e~v~pAa~~~g~kv~lGiw~tdd----------~~~~~-~~til~ay~~~~~~d~v~~v~VGnEal~r----~~~tasql 154 (305)
T COG5309 90 ENVLPAAEASGFKVFLGIWPTDD----------IHDAV-EKTILSAYLPYNGWDDVTTVTVGNEALNR----NDLTASQL 154 (305)
T ss_pred hhhHHHHHhcCceEEEEEeeccc----------hhhhH-HHHHHHHHhccCCCCceEEEEechhhhhc----CCCCHHHH
Confidence 33444566788899999854331 11111 1122334432223 358899999997443 56899999
Q ss_pred HHHHHHHHHHHHHH
Q 019695 214 GKDLINLKNIINEL 227 (337)
Q Consensus 214 a~d~~~~~~~i~~~ 227 (337)
.+-..+.|.++++.
T Consensus 155 ~~~I~~vrsav~~a 168 (305)
T COG5309 155 IEYIDDVRSAVKEA 168 (305)
T ss_pred HHHHHHHHHHHHhc
Confidence 99889999999855
No 17
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=84.59 E-value=4.9 Score=37.54 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCcccCC-C---CCCCCCC---hHHHHHHHHHHHHcCC-ccceeeecccccCCCCCC
Q 019695 135 DELNQLFNRTRAIVSFGLNAL-HGRHNIRH-N---AWGGAWD---SNNARDFLKYTISMGY-QIDSWEYGNELSGRTSIG 205 (337)
Q Consensus 135 ~~~~~f~~~~G~~~ifglN~~-~g~~~~~~-~---~~~g~w~---~~~A~~lv~y~~~~g~-~l~~wElGNEpd~~~~~~ 205 (337)
+.|.++|++.|.-|+--+... .+...... . ..+..|. ..+.+++|+. .+++ .|..|.+|||+
T Consensus 62 ~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~NHPSIi~W~~gNE~------- 132 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRR--DRNHPSIIMWSLGNES------- 132 (298)
T ss_dssp HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHH--HTT-TTEEEEEEEESS-------
T ss_pred HHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHc--CcCcCchheeecCccC-------
Confidence 568889999998888766541 11000000 0 0000111 0122333332 1222 47799999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcC
Q 019695 206 ASVDAELYGKDLINLKNIINELYKN 230 (337)
Q Consensus 206 ~~~~~~~Ya~d~~~~~~~i~~~~~~ 230 (337)
.+...++++.+.+++.+|+
T Consensus 133 ------~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 ------DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp ------HHHHHHHHHHHHHHHH-TT
T ss_pred ------ccccchhHHHHHHHhcCCC
Confidence 3455567788888888765
No 18
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=76.63 E-value=17 Score=35.51 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=69.3
Q ss_pred cceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHH-HHHhcCCCCCCeEecCCCCCCHHHHHHHHhhhCCCccceEEEe
Q 019695 189 IDSWEYGNELSGRTSIGASVDAELYGKDLINLKNII-NELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHH 267 (337)
Q Consensus 189 l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i-~~~~~~~~~~p~l~gP~~~~~~~w~~~fl~~~~~~~id~vS~H 267 (337)
..-|++-|||+.. .+-.+|-+ +..++ ++.+|.. .+-| ...++....|++ ... .||.|+.|
T Consensus 105 kw~f~~~~~pn~~------ad~~eyfk----~y~~~a~~~~p~i----~vg~---~w~~e~l~~~~k-~~d-~idfvt~~ 165 (428)
T COG3664 105 KWPFYSPNEPNLL------ADKQEYFK----LYDATARQRAPSI----QVGG---SWNTERLHEFLK-KAD-EIDFVTEL 165 (428)
T ss_pred ecceeecCCCCcc------cchHHHHH----HHHhhhhccCcce----eecc---ccCcHHHhhhhh-ccC-cccceeec
Confidence 4478888999887 22223322 22221 1223321 2222 223445556665 333 49999999
Q ss_pred ecCCCCC-CChhhhhcc-CChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccccCCCCCCCCcchhhhh
Q 019695 268 IYNLGPG-VDPNLVSKI-LNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVN 334 (337)
Q Consensus 268 ~Y~~~~g-~~~~~~~~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~sa~~~G~~gvSdtF~a 334 (337)
.|..... .+....+.+ +.+. .......+.+.+.++++.-++|+.+.|=|..++ +..-+-++|.+
T Consensus 166 a~~~~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~-~~~~~n~sy~r 231 (428)
T COG3664 166 ANSVDAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTG-PREPTNGSYVR 231 (428)
T ss_pred ccccccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccCC-CccccCceeeh
Confidence 9953311 111111111 1221 344456778888889998899999999887764 55666666655
No 19
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=76.60 E-value=30 Score=32.75 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=57.1
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH--HcCCccceeeecccccCCCCCCCCCCHHH
Q 019695 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI--SMGYQIDSWEYGNELSGRTSIGASVDAEL 212 (337)
Q Consensus 135 ~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~--~~g~~l~~wElGNEpd~~~~~~~~~~~~~ 212 (337)
|+.|+.+..+|.=+|+.||..... +...++...|+..--....+-.. ++=.|+.+|=+|||.-.- . .+..+..
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~s--I~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~-~--~~t~aap 156 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNGS--INRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVIND-A--SNTNAAP 156 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTBS----TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-S-T--T-GGGHH
T ss_pred HHHHHHHHhCCCEEEEecCCCCcc--ccCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecC-C--CCcccHH
Confidence 788889999999999999976542 22223445676533222222111 223468899999998654 1 2233555
Q ss_pred HHHH-HHHHHHHHHHHhcCCCCCCeEecCCCCCC---HHHHHHHHhhhCCC--ccceEEEeecC
Q 019695 213 YGKD-LINLKNIINELYKNSSSKPTILAPGGFFD---QEWYAKFLQVSGSN--VVNGVTHHIYN 270 (337)
Q Consensus 213 Ya~d-~~~~~~~i~~~~~~~~~~p~l~gP~~~~~---~~w~~~fl~~~~~~--~id~vS~H~Y~ 270 (337)
|.+- .|.+++.|++. ..+..-+|-..+.. ..-+.++|. ++.. .+|.+.+-.|-
T Consensus 157 ~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~-Cg~~~~~iDf~g~N~Y~ 215 (314)
T PF03198_consen 157 YVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLN-CGDDDERIDFFGLNSYE 215 (314)
T ss_dssp HHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTT-BTT-----S-EEEEE--
T ss_pred HHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhc-CCCcccccceeeeccce
Confidence 5554 34445555542 12223345444322 223445553 3322 58999998884
No 20
>TIGR03356 BGL beta-galactosidase.
Probab=75.69 E-value=6.5 Score=38.97 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecCCCC
Q 019695 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (337)
Q Consensus 79 ~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~ 158 (337)
+.++|.+|--.+|++=.++-.. |.. . +.+ ..=.-.+.+.+.+-+++.|.++|++|.=-.
T Consensus 60 i~l~~~~G~~~~R~si~Wsri~---p~g---~---------~~~----n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd-- 118 (427)
T TIGR03356 60 VALMKELGVDAYRFSIAWPRIF---PEG---T---------GPV----NPKGLDFYDRLVDELLEAGIEPFVTLYHWD-- 118 (427)
T ss_pred HHHHHHcCCCeEEcccchhhcc---cCC---C---------CCc----CHHHHHHHHHHHHHHHHcCCeeEEeeccCC--
Confidence 5678889988999874332211 110 0 000 001235578888899999999999996211
Q ss_pred cccCCC-CCCCCCCh-HHHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 159 HNIRHN-AWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 159 ~~~~~~-~~~g~w~~-~~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+.. ...|.|.. +....+++||. ..+.+|..|+.=|||+..
T Consensus 119 --~P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 165 (427)
T TIGR03356 119 --LPQALEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCS 165 (427)
T ss_pred --ccHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCccee
Confidence 1110 01266754 45667888864 347789999999999965
No 21
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=75.00 E-value=10 Score=32.52 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHH---cCCccceeeecccccCCCCCCCCC
Q 019695 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTIS---MGYQIDSWEYGNELSGRTSIGASV 208 (337)
Q Consensus 132 ~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~~---~g~~l~~wElGNEpd~~~~~~~~~ 208 (337)
.-.+.+.+.|++.|.+|.+||+.-..- . + ..+..|.......+++...+ +.-.+++|=|=+|++.++ +
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~~~~~~-w--~-~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-----~ 135 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLYFDPDY-W--D-QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-----W 135 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCCCCchh-h--h-ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-----c
Confidence 446888999999999999999864310 0 0 00112211111222222111 122589999999999872 3
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCeEecC
Q 019695 209 DAELYGKDLINLKNIINELYKNSSSKPTILAP 240 (337)
Q Consensus 209 ~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP 240 (337)
.. ...++.+.+.++++.+ .+|..+.|
T Consensus 136 ~~---~~~~~~l~~~lk~~s~---~~Pv~ISp 161 (166)
T PF14488_consen 136 NA---PERFALLGKYLKQISP---GKPVMISP 161 (166)
T ss_pred ch---HHHHHHHHHHHHHhCC---CCCeEEec
Confidence 23 4456677777777744 45666665
No 22
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=69.10 E-value=79 Score=35.15 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCEEEEEeecCC-CCcccCC--C-CCCCCCCh---HHHHHHHHHHHHcCC-ccceeeecccccCCCCCCC
Q 019695 135 DELNQLFNRTRAIVSFGLNALH-GRHNIRH--N-AWGGAWDS---NNARDFLKYTISMGY-QIDSWEYGNELSGRTSIGA 206 (337)
Q Consensus 135 ~~~~~f~~~~G~~~ifglN~~~-g~~~~~~--~-~~~g~w~~---~~A~~lv~y~~~~g~-~l~~wElGNEpd~~~~~~~ 206 (337)
+.|.++|.+.|.-|+=-+|+.. +-....+ . ...-.|.. .+++++|+. .+++ .|..|.+|||...
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~R--drNHPSIi~WslGNE~~~------ 452 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHA--QKNHPSIIIWSLGNESGY------ 452 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccc------
Confidence 5688899999987776555322 1000000 0 00001211 122333321 2233 3779999999732
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC
Q 019695 207 SVDAELYGKDLINLKNIINELYKN 230 (337)
Q Consensus 207 ~~~~~~Ya~d~~~~~~~i~~~~~~ 230 (337)
...++++.+++++.+|.
T Consensus 453 -------g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 453 -------GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred -------cHHHHHHHHHHHHhCCC
Confidence 12457788888888765
No 23
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=55.72 E-value=64 Score=31.12 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeec
Q 019695 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNA 154 (337)
Q Consensus 79 ~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~ 154 (337)
..++|.+|--.+|||=- .|..= ++ +.+.|.| +..|.+.+.+++.|.+||+++..
T Consensus 16 ~~~m~~~G~n~vri~~~-----~W~~l-EP---------~eG~ydF-------~~lD~~l~~a~~~Gi~viL~~~~ 69 (374)
T PF02449_consen 16 LRLMKEAGFNTVRIGEF-----SWSWL-EP---------EEGQYDF-------SWLDRVLDLAAKHGIKVILGTPT 69 (374)
T ss_dssp HHHHHHHT-SEEEE-CC-----EHHHH--S---------BTTB----------HHHHHHHHHHHCTT-EEEEEECT
T ss_pred HHHHHHcCCCEEEEEEe-----chhhc-cC---------CCCeeec-------HHHHHHHHHHHhccCeEEEEecc
Confidence 46668889889998731 22110 11 1222333 45899999999999999999863
No 24
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=44.04 E-value=2.5e+02 Score=27.54 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHH
Q 019695 134 WDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYT 182 (337)
Q Consensus 134 ~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~ 182 (337)
+.+=.+-|+..|.||++.|--+.|.+... +.+.|..++.|.
T Consensus 92 i~~di~~CQS~GiKVlLSLGG~~GnYs~~--------~d~dA~~fA~~L 132 (568)
T KOG4701|consen 92 IETDIQVCQSNGIKVLLSLGGYNGNYSLN--------NDDDATNFAFQL 132 (568)
T ss_pred hhhHHHHHHhcCeEEEEeccCcccceeec--------cchhHHHHHHHH
Confidence 44456689999999999997666644332 234666666663
No 25
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=42.43 E-value=62 Score=32.62 Aligned_cols=100 Identities=11% Similarity=0.140 Sum_probs=62.6
Q ss_pred HHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecCCCC
Q 019695 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (337)
Q Consensus 79 ~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~ 158 (337)
+.|+|.||--..|++=.++= .-|..... .+ + .=+-.+.+.+.+-+.+.|.+++++|.=-.
T Consensus 75 I~Lm~elG~~~yRfSIsWsR---I~P~G~~~--~~---N----------~~gl~~Y~~lid~l~~~GI~P~vTL~H~d-- 134 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTR---IFPKGDEA--QP---N----------EEGLKFYDDMFDELLKYNIEPVITLSHFE-- 134 (477)
T ss_pred HHHHHHcCCCEEEeccccee---eccCCCCC--CC---C----------HHHHHHHHHHHHHHHHcCCEEEEEeeCCC--
Confidence 57889999878887743321 11110000 00 0 11234567888888999999999996111
Q ss_pred cccCCC-CCC-CCC-ChHHHHHHHHHHH----HcCCccceeeecccccC
Q 019695 159 HNIRHN-AWG-GAW-DSNNARDFLKYTI----SMGYQIDSWEYGNELSG 200 (337)
Q Consensus 159 ~~~~~~-~~~-g~w-~~~~A~~lv~y~~----~~g~~l~~wElGNEpd~ 200 (337)
.+.. ... |.| +++.+..+++||. ..|.+|..|--=|||+.
T Consensus 135 --lP~~L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 135 --MPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred --CCHHHHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 1110 012 778 4566778888874 46889999999999984
No 26
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=40.75 E-value=27 Score=28.41 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHcCCceEeecccccceeeecC
Q 019695 72 DLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDV 104 (337)
Q Consensus 72 ~l~~~~L~~l~k~l~p~~lRiGG~~~D~~~y~~ 104 (337)
..++-+|....++||| |||=+=+..|++.||=
T Consensus 6 ~~~~~RLlk~f~alGP-YlRE~qc~e~~ffFDC 37 (127)
T PRK10984 6 GHPKSRLIKKFTALGP-YLREGQCEENRFFFDC 37 (127)
T ss_pred CCCchHHHHHHHHhCc-hhchhcccCCCEEeee
Confidence 3566688888889997 9999999999999974
No 27
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=40.17 E-value=32 Score=33.29 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=22.4
Q ss_pred ccceEEEeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccccC
Q 019695 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGA 320 (337)
Q Consensus 260 ~id~vS~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~sa 320 (337)
.+|.++++.|+.+..... . .++..+. -..++++....++|+|+.|+.+.
T Consensus 251 ~~D~~~~d~Y~~~~~~~~--~---~~~~~~a-------~~~dl~R~~~~~kpf~v~E~~~g 299 (374)
T PF02449_consen 251 YLDVVSWDSYPDGSFDFY--D---DDPYSLA-------FNHDLMRSLAKGKPFWVMEQQPG 299 (374)
T ss_dssp GSSSEEEEE-HHHHHTTT--T-----TTHHH-------HHHHHHHHHTTT--EEEEEE--S
T ss_pred hCCcceeccccCcccCCC--C---CCHHHHH-------HHHHHHHhhcCCCceEeecCCCC
Confidence 599999999975100000 0 0111111 11233344467899999998764
No 28
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=40.03 E-value=38 Score=30.52 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=33.3
Q ss_pred hHhHHHHHHhhhhhhhhcccceeEEEEecC-CCcccccC--CCeEEEEecc
Q 019695 3 IFLSLFIYLISYLPVILARDVTRVTIFVDA-TKTVATND--EHFICATVDW 50 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~i~~i~--~~f~s~~ie~ 50 (337)
++|+.++..||.++++.++.++.++|.+.. ..|....+ ..+.|+.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~pPf~~~~~~g~~~G~~vdl 55 (260)
T PRK15010 5 ILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDL 55 (260)
T ss_pred HHHHHHHHHHhccchhhhccCCeEEEEecCCcCCceeECCCCCEEeeeHHH
Confidence 344455556677777788888999998874 56777654 3577777773
No 29
>PF12360 Pax7: Paired box protein 7 ; InterPro: IPR022106 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00046 from PFAM, PF00292 from PFAM. Pax7 belongs to a family of genes that encode paired-box-containing transcription factors involved in the control of developmental processes. Pax7 has a distinct role in the specification of myogenic satellite cells.
Probab=39.79 E-value=15 Score=24.10 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.1
Q ss_pred cccccCCC--C---CCCCcchhhhh
Q 019695 315 GESGGAYN--S---GGRHVSNTFVN 334 (337)
Q Consensus 315 gEt~sa~~--~---G~~gvSdtF~a 334 (337)
.|.+++|| + +-.+.||+|++
T Consensus 3 ~d~~saY~Lss~Rh~Fs~YSDsF~~ 27 (45)
T PF12360_consen 3 ADGSSAYCLSSNRHSFSGYSDSFMS 27 (45)
T ss_pred ccccccccccccccccccccccccC
Confidence 47889998 3 44578999986
No 30
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=37.38 E-value=21 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHcCCceEeecccccceeeecC
Q 019695 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYDV 104 (337)
Q Consensus 73 l~~~~L~~l~k~l~p~~lRiGG~~~D~~~y~~ 104 (337)
.++-+|....++||| |||=+=+..|++.||=
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFDC 35 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFDC 35 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeeec
Confidence 445677888888887 9999999999999973
No 31
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.12 E-value=92 Score=29.00 Aligned_cols=64 Identities=8% Similarity=-0.016 Sum_probs=38.3
Q ss_pred eechHHHHHHHHHHhhcCCEEEEEeecCCCCc-ccCCCCCCCCCChHHHHHHHHHHHHcCCcccee
Q 019695 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRH-NIRHNAWGGAWDSNNARDFLKYTISMGYQIDSW 192 (337)
Q Consensus 128 ~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~~-~~~~~~~~g~w~~~~A~~lv~y~~~~g~~l~~w 192 (337)
.++.+....+.+||.+.|++.++- |.+=..- .....+....+....-.++++|+++||..|.-|
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 467777899999999999988874 4432100 000112222334457889999999999888666
No 32
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=33.89 E-value=44 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=31.4
Q ss_pred chHhHHHHHHhhhhhhhhcccceeEEEEecC-CCcccccCC--CeEEEEecc
Q 019695 2 GIFLSLFIYLISYLPVILARDVTRVTIFVDA-TKTVATNDE--HFICATVDW 50 (337)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~i~~i~~--~f~s~~ie~ 50 (337)
+.+|..++.|++++++.+++....++|.+.. ..|....++ ...|+.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl 53 (250)
T TIGR01096 2 SVLLAALVAGASSAATAAAAKEGSVRIGTETGYPPFESKDANGKLVGFDVDL 53 (250)
T ss_pred chhHHHHHHhccchhhHHHhhCCeEEEEECCCCCCceEECCCCCEEeehHHH
Confidence 3466777788887666666555788888864 356554443 466777774
No 33
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=33.66 E-value=86 Score=31.61 Aligned_cols=101 Identities=10% Similarity=0.015 Sum_probs=64.5
Q ss_pred HHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecCCCC
Q 019695 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (337)
Q Consensus 79 ~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~ 158 (337)
+.|++.||--..|++=+++ ..-|..... .+ + .-+-++.+.+.+-+++.|.+++++|+--..
T Consensus 77 i~l~~~lG~~~yR~si~Ws---Ri~P~g~~~--~~---n----------~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~- 137 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWS---RLFPQGDEL--TP---N----------QQGIAFYRSVFEECKKYGIEPLVTLCHFDV- 137 (474)
T ss_pred HHHHHHcCCCeEEeeceee---eeeeCCCCC--CC---C----------HHHHHHHHHHHHHHHHcCCEEEEEeeCCCC-
Confidence 4688899988888874332 222211000 00 0 112356788888999999999999983321
Q ss_pred cccCCC--CCCCCCChH-HHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 159 HNIRHN--AWGGAWDSN-NARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 159 ~~~~~~--~~~g~w~~~-~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
+.- +.-|.|... .+..+++||. ..|.+|..|--=|||+.+
T Consensus 138 ---P~~l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 138 ---PMHLVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred ---CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 210 012778764 4566777864 458899999999999955
No 34
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=33.16 E-value=1.4e+02 Score=28.75 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=60.5
Q ss_pred eeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHH--hcCCCCCCeEe-cCCCCCCHHHHHHHHhhh--CCCccceEE
Q 019695 191 SWEYGNELSGRTSIGASVDAELYGKDLINLKNIINEL--YKNSSSKPTIL-APGGFFDQEWYAKFLQVS--GSNVVNGVT 265 (337)
Q Consensus 191 ~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~--~~~~~~~p~l~-gP~~~~~~~w~~~fl~~~--~~~~id~vS 265 (337)
+|--==|++.-.-.-..+++.||-+-|+++...++.. .+. .++. .|.+- .+++... |.+.||.|-
T Consensus 183 y~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~----lk~~yspn~~------~~~~~~yYPGd~YVDiVG 252 (355)
T COG4124 183 YWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPW----LKFMYSPNGG------FKGLEAYYPGDNYVDIVG 252 (355)
T ss_pred EechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCe----eEEEEcCCCC------cccchhcCCCCceeeeee
Confidence 5554455554322245789999999999999998765 222 2332 33322 1233332 334688888
Q ss_pred EeecCCCCCCChhhhhccCChHHHHhHHHHHHHHHHHHHHhCCCCceEEcccccCCC
Q 019695 266 HHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (337)
Q Consensus 266 ~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wlgEt~sa~~ 322 (337)
+--|-..+ .+ ..+.....+|.+.+...+. +-.+-++|+|+.|+|..-+
T Consensus 253 L~~ysd~~-~n--~~~~~~~~tyaelt~~gy~------~~~~~nKPf~faElGp~~~ 300 (355)
T COG4124 253 LDVYSDDP-YN--QGDTGRDKTYAELTGPGYN------RVAGFNKPFGFAELGPEGG 300 (355)
T ss_pred eeccccCc-cc--cccccccccHHHHhcCcch------hhhhcCCceeeecccccCC
Confidence 87775442 11 0111112233332222222 1124469999999998654
No 35
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=32.75 E-value=1.4e+02 Score=23.04 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeecccccCCCCCCCCCCH
Q 019695 131 MQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDA 210 (337)
Q Consensus 131 ~~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~~~g~~l~~wElGNEpd~~~~~~~~~~~ 210 (337)
.+.+..+.++.++.|++..|.+.-.. ..+-.+.++...+. .+||||--... ..-...+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~~---------------~~~~~~~l~~l~~~-----G~ei~~H~~~H-~~~~~~~~ 75 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGSW---------------VERYPDQLRELAAA-----GHEIGNHGWSH-PNLSTLSP 75 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HHH---------------HHHHHHHHHHHHHT-----T-EEEEE-SSS-SCGGGS-H
T ss_pred hhhHHHHHHHHHhcccceeeeecccc---------------cccccccchhHHHH-----HHHHHhcCCcc-cccccCCH
Confidence 46689999999999999999885322 11223444544443 47778776443 11245788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeEecCCCCCCHH
Q 019695 211 ELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQE 247 (337)
Q Consensus 211 ~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~~~~~~ 247 (337)
++..++..+-++.|++..+. .-.-+..|.+..+..
T Consensus 76 ~~~~~ei~~~~~~l~~~~g~--~~~~f~~P~g~~~~~ 110 (123)
T PF01522_consen 76 EELRREIERSREILEEITGR--PPKGFRYPFGSYDDN 110 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--EESEEE-GGGEECHH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCcEEECCCCCCCHH
Confidence 89999999999999987543 112455666654443
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=31.74 E-value=98 Score=31.21 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEeecCCCCcccCCC-CCC-CCCCh-HHHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHN-AWG-GAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 132 ~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~-~~~-g~w~~-~~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+.+.+.+-+.+.|.+++++|.=-. .+-. ... |.|.. +.+..+++||. ..|.+|..|=-=|||+..
T Consensus 108 ~~Y~~lid~L~~~GI~P~VTL~H~d----lP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~ 180 (476)
T PRK09589 108 QFYDDLFDECLKQGIEPVVTLSHFE----MPYHLVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQ 180 (476)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC----CCHHHHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhh
Confidence 4567788888899999999997211 1100 011 77865 45677888874 458899999999999954
No 37
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=30.99 E-value=39 Score=20.64 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHH
Q 019695 167 GGAWDSNNARDFLKYTI 183 (337)
Q Consensus 167 ~g~w~~~~A~~lv~y~~ 183 (337)
.|+|...+|.+++++|.
T Consensus 15 K~dWtanea~~fAKhCv 31 (32)
T PF11216_consen 15 KGDWTANEAADFAKHCV 31 (32)
T ss_pred cccCcHhHHHHHHHhhc
Confidence 48899999999999874
No 38
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=30.73 E-value=3.6e+02 Score=26.39 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCC-CCCCCh-----HHHHHHHHHHHH---cCCccceeeecccccC
Q 019695 133 RWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAW-GGAWDS-----NNARDFLKYTIS---MGYQIDSWEYGNELSG 200 (337)
Q Consensus 133 ~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~-~g~w~~-----~~A~~lv~y~~~---~g~~l~~wElGNEpd~ 200 (337)
..+++.+++++.|..|++.+-...+....-+.+. .+.+.. +.-.+..++... ....|-.+|+=|||.+
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 5788899999999999998764442111111011 112222 223344444332 2334668999999997
No 39
>PLN02849 beta-glucosidase
Probab=30.20 E-value=1e+02 Score=31.31 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEeecCCCCcccCCC-CCC-CCCCh-HHHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHN-AWG-GAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 132 ~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~-~~~-g~w~~-~~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+.+.+.+-+.+.|.+++++|.==. .+-- ... |.|.. +.+..+++||. ..|.+|..|--=|||+.+
T Consensus 119 ~fY~~lid~l~~~GI~P~VTL~H~d----lP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~ 191 (503)
T PLN02849 119 QFYKNFIQELVKHGIEPHVTLFHYD----HPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIF 191 (503)
T ss_pred HHHHHHHHHHHHcCCeEEEeecCCC----CcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhh
Confidence 4567788888999999999997111 1100 012 67865 45778888874 458899999999999965
No 40
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.02 E-value=64 Score=28.20 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=31.0
Q ss_pred hHhHHHHHHhhhhhhhhcccceeEEEEecCCCcccccCCCeEEEEeccCCCCccCC
Q 019695 3 IFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNY 58 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~i~~i~~~f~s~~ie~~p~~~~~y 58 (337)
++|+|..+|++++...-..... .+|..+.+.|. ..-+++-+..+| |.++..|
T Consensus 9 ~ILll~a~~~~~w~~~~~~~~~-~~v~~~~d~p~-Y~~e~~~~~~~d--e~G~~~y 60 (188)
T COG3117 9 LILLLAALALSGWLLGLEQDEI-EQVRPNPDEPA-YTMEGLDTTVYD--EQGKLKY 60 (188)
T ss_pred HHHHHHHHHHHHHhhhcccccc-cccccCCCCCc-eeecCcceeEEC--CCcceeE
Confidence 4566667777776665555443 56666666665 555555555555 5555443
No 41
>PLN02998 beta-glucosidase
Probab=25.81 E-value=1.3e+02 Score=30.56 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEeecCCCCcccCCC-CCC-CCCCh-HHHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHN-AWG-GAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 132 ~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~-~~~-g~w~~-~~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+.+.+.+-+.+.|.+++++|.==. .+-. ... |.|.. +.+..+++||. ..|.+|..|=-=|||+.+
T Consensus 122 ~~Y~~lid~L~~~GIeP~VTL~H~d----lP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 194 (497)
T PLN02998 122 QYYNNLIDELITHGIQPHVTLHHFD----LPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVF 194 (497)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCC----CCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchh
Confidence 4567788888899999999997111 1110 012 67865 45667888864 458999999999999966
No 42
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=25.58 E-value=6e+02 Score=28.43 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCEEEEEeecCC-CCcccCCCCCCCCCChHHHHHHHHHHH--HcCC-ccceeeecccccCCCCCCCCCCH
Q 019695 135 DELNQLFNRTRAIVSFGLNALH-GRHNIRHNAWGGAWDSNNARDFLKYTI--SMGY-QIDSWEYGNELSGRTSIGASVDA 210 (337)
Q Consensus 135 ~~~~~f~~~~G~~~ifglN~~~-g~~~~~~~~~~g~w~~~~A~~lv~y~~--~~g~-~l~~wElGNEpd~~~~~~~~~~~ 210 (337)
+.|.++|.+.|.-|+=-+|+.. +.........+-.|.. ...+-++... .+++ .|..|-+|||+.. +
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~-~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~----g----- 466 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLP-AMSERVTRMVQRDRNHPSIIIWSLGNESGH----G----- 466 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHH-HHHHHHHHHHHhCCCCCEEEEEeCccCCCc----C-----
Confidence 5688899999998886666521 1000000000011211 1122222222 2233 3779999999732 1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 019695 211 ELYGKDLINLKNIINELYKN 230 (337)
Q Consensus 211 ~~Ya~d~~~~~~~i~~~~~~ 230 (337)
..++++.+++++.+|.
T Consensus 467 ----~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 467 ----ANHDALYRWIKSNDPS 482 (1027)
T ss_pred ----hhHHHHHHHHHhhCCC
Confidence 1246777888887764
No 43
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=24.77 E-value=1.2e+02 Score=31.17 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCccceeeecccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCC
Q 019695 176 RDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGG 242 (337)
Q Consensus 176 ~~lv~y~~~~g~~l~~wElGNEpd~~~~~~~~~~~~~Ya~d~~~~~~~i~~~~~~~~~~p~l~gP~~ 242 (337)
..+|+|..++|+.++...-|| |+-- ...++-++|.+...+--+.|+++.+. .++.++|-|.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~n-P~~~---~r~~~ldDYv~~i~~Ald~V~~~tG~--~~vnl~GyC~ 297 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRN-PDKA---HREWGLSTYVDALKEAVDAVRAITGS--RDLNLLGACA 297 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCC-CChh---hcCCCHHHHHHHHHHHHHHHHHhcCC--CCeeEEEECc
Confidence 469999999999999999998 5433 25689999996444444444444322 4456777664
No 44
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=24.64 E-value=1.2e+02 Score=27.22 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHhhhhhhhhcccceeEEEEecC-CCccccc--CCCeEEEEecc
Q 019695 8 FIYLISYLPVILARDVTRVTIFVDA-TKTVATN--DEHFICATVDW 50 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~v~v~~-~~~i~~i--~~~f~s~~ie~ 50 (337)
+++.++.++.++++.+..++|.++. ..|.... +-...|+.+|.
T Consensus 10 ~~~~~~~~~~~~~a~~~~l~v~~~~~~~P~~~~~~~g~~~G~~vdi 55 (259)
T PRK15437 10 LVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDL 55 (259)
T ss_pred HHHHHHhhhhhhhccCCeEEEEeCCCCCCcceeCCCCCEEeeeHHH
Confidence 3333344455666667888888774 4565543 34566777773
No 45
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=21.78 E-value=1.9e+02 Score=29.00 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=62.3
Q ss_pred HHHHHHcCCceEeecccccceeeecCCCCCCCCCCCccCCCCcCCCccceechHHHHHHHHHHhhcCCEEEEEeecCCCC
Q 019695 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (337)
Q Consensus 79 ~~l~k~l~p~~lRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~~~~~~~f~~~~G~~~ifglN~~~g~ 158 (337)
+.|+|.+|--..|++=.++=-. |... .. + + .=+-.+.+++.+-+.+.|.+++++|.=-.
T Consensus 60 i~L~~~lG~~~yRfSIsWsRI~---P~G~----g~-v-N----------~~gl~~Y~~lid~l~~~GI~P~VTL~H~d-- 118 (469)
T PRK13511 60 LKLAEEFGVNGIRISIAWSRIF---PDGY----GE-V-N----------PKGVEYYHRLFAECHKRHVEPFVTLHHFD-- 118 (469)
T ss_pred HHHHHHhCCCEEEeeccHhhcC---cCCC----CC-c-C----------HHHHHHHHHHHHHHHHcCCEEEEEecCCC--
Confidence 5788999987888763332111 1100 00 0 0 11235678888889999999999997211
Q ss_pred cccCCC-CCCCCCChH-HHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 159 HNIRHN-AWGGAWDSN-NARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 159 ~~~~~~-~~~g~w~~~-~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+-. ...|.|... .+..+++||. ..|. |..|--=|||+.+
T Consensus 119 --lP~~L~~~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 119 --TPEALHSNGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred --CcHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 1110 013778754 5667788864 4588 9999999999976
No 46
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=21.62 E-value=2.2e+02 Score=28.71 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEeecCCCCcccCCC--CCCCCCChH-HHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHN--AWGGAWDSN-NARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 132 ~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~--~~~g~w~~~-~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+.+.+.+-+.+.|.+++.+|.==. .+-- +.-|.|... .+..+++||. ..|.+|..|=-=|||+.+
T Consensus 114 ~~Y~~lId~L~~~GI~P~VTL~H~d----lP~~L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 114 QFYEDIFKECHKYGIEPLVTITHFD----CPMHLIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccC----CCHHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 5568888888999999999996111 1110 012778754 4667788864 468999999999999965
No 47
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.54 E-value=1.9e+02 Score=26.97 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeecccc
Q 019695 130 HMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNEL 198 (337)
Q Consensus 130 t~~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~~~~g~w~~~~A~~lv~y~~~~g~~l~~wElGNEp 198 (337)
|..|=+++.++++. .++++-+ |+.+++|...|++-|.+.+-+.+..|=-.|.
T Consensus 195 T~~RQ~a~~~la~~--vD~miVV---------------Gg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el 246 (280)
T TIGR00216 195 TQNRQDAVKELAPE--VDLMIVI---------------GGKNSSNTTRLYEIAEEHGPPSYLIETAEEL 246 (280)
T ss_pred cHHHHHHHHHHHhh--CCEEEEE---------------CCCCCchHHHHHHHHHHhCCCEEEECChHHC
Confidence 56666777777776 4455544 4467889999999998877665555544444
No 48
>PLN02814 beta-glucosidase
Probab=20.92 E-value=2e+02 Score=29.32 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEeecCCCCcccCCC-CCC-CCCChH-HHHHHHHHHH----HcCCccceeeecccccCC
Q 019695 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHN-AWG-GAWDSN-NARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (337)
Q Consensus 132 ~~~~~~~~f~~~~G~~~ifglN~~~g~~~~~~~-~~~-g~w~~~-~A~~lv~y~~----~~g~~l~~wElGNEpd~~ 201 (337)
.+.+.+.+-+.+.|.+++++|.==. .+-. ... |.|... .+..+++||. ..|.+|..|--=|||+.+
T Consensus 117 ~fY~~lId~l~~~GI~P~VTL~H~d----lP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~ 189 (504)
T PLN02814 117 LFYKNLIKELRSHGIEPHVTLYHYD----LPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIF 189 (504)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCC----CCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchh
Confidence 5567888888999999999997111 1100 012 678754 5667788874 458899999999999965
Done!