Citrus Sinensis ID: 019696

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MTRTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL
ccccccccccccccccccccccHHHHHHccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEcccccccccccccccccccEEEEEEcccEEEEccEEEEcccccccccccccEEEEEEcccEEEEEccEEEEccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEcccccEEEEcccccccccEEEEEEccEEEEccccEEccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEcccccccc
ccccccccccccccccHccHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEcccEEcccccccccccEcEEEEEEEcccEEEEEEEEEcccccccccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEEcccccEEEEccccccccccEEEEEEEEHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEccHHHHHcccHHHHccccccccc
MTRTQFSEQQFMKWVNFVGRLKHSVFKsaknklfpaytltvaknpaagdftkiqdaidslpfINLVRVVIKVHAgvykekvnippfksfitiegagadktivqwgdtaqtrgprgqpigtwasatfavnapyfiaknitfknttpvpapgavgkQAVAFRISADTATFWGCKFLGAQDTLYDHVGRhyykdcyiegsVDFIFGNALSLFEGCHVHAIAQYTGALTAqgrsslledtgfsfvnckvtgsgalylgrawgpfSRVVFAYTYmdniiipkgwynwgdpnremtvfygqykckgpgasfaGRVSWAREltdeeakpfislsfidgsewikl
mtrtqfseqqfMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAgvykekvnippFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELtdeeakpfislsfidgsewikl
MTRTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL
*********QFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEW***
**************VNFVGR***********KLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL
********QQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL
**********FMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL
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MTRTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q8VYZ3383 Probable pectinesterase 5 yes no 0.994 0.874 0.808 1e-166
Q8LPF3362 Probable pectinesterase 6 no no 0.878 0.817 0.510 3e-83
Q9ZQA3407 Probable pectinesterase 1 no no 0.908 0.751 0.468 3e-82
O23038393 Probable pectinesterase 8 no no 0.866 0.743 0.475 2e-79
Q9ZQA4333 Putative pectinesterase 1 no no 0.860 0.870 0.451 6e-76
Q9LVQ0317 Pectinesterase 31 OS=Arab no no 0.845 0.899 0.460 2e-73
Q9SIJ9352 Putative pectinesterase 1 no no 0.810 0.775 0.460 2e-71
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.881 0.781 0.452 3e-71
Q84WM7361 Pectinesterase PPME1 OS=A no no 0.845 0.789 0.433 8e-66
Q9LSP1344 Probable pectinesterase 6 no no 0.866 0.848 0.397 1e-65
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function desciption
 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 271/335 (80%), Positives = 302/335 (90%)

Query: 3   RTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPF 62
           RTQ  E +FMKWV FVG LKHSVFK+AKNKLFP+YTLTV K    GDFTKIQDAIDSLP 
Sbjct: 49  RTQNPEDEFMKWVRFVGSLKHSVFKAAKNKLFPSYTLTVHKKSNKGDFTKIQDAIDSLPL 108

Query: 63  INLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWA 122
           IN VRVVIKVHAGVYKEKV+IPP K+FITIEG GA+KT V+WGDTAQT   +G P+GT+ 
Sbjct: 109 INFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYN 168

Query: 123 SATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYD 182
           SA+FAVN+P+F+AKNITF+NTTPVP PGAVGKQAVA R+SAD A F+GC+ LGAQDTLYD
Sbjct: 169 SASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYD 228

Query: 183 HVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVN 242
           H+GRHYYKDCYIEGSVDFIFGNALSL+EGCHVHAIA   GA+TAQGRSS+LEDTGFSFV 
Sbjct: 229 HLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFVK 288

Query: 243 CKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPG 302
           CKVTG+G LYLGRAWGPFSRVVFAYTYMDNII+P+GWYNWGDP+REMTVFYGQYKC G G
Sbjct: 289 CKVTGTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAG 348

Query: 303 ASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL 337
           A++ GRV+WARELTDEEAKPF+SL+FIDGSEWIKL
Sbjct: 349 ANYGGRVAWARELTDEEAKPFLSLTFIDGSEWIKL 383
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
255546301383 Pectinesterase PPE8B precursor, putative 0.997 0.877 0.898 0.0
449436052393 PREDICTED: probable pectinesterase 53-li 0.997 0.854 0.898 0.0
449489800387 PREDICTED: probable pectinesterase 53-li 0.997 0.868 0.898 0.0
224122600381 predicted protein [Populus trichocarpa] 0.997 0.881 0.877 1e-179
147776052379 hypothetical protein VITISV_037092 [Viti 1.0 0.889 0.881 1e-177
356495321373 PREDICTED: probable pectinesterase 53-li 1.0 0.903 0.869 1e-175
356520820375 PREDICTED: probable pectinesterase 53-li 1.0 0.898 0.863 1e-174
356523858375 PREDICTED: probable pectinesterase 53-li 0.985 0.885 0.851 1e-171
356511389375 PREDICTED: probable pectinesterase 53-li 0.985 0.885 0.854 1e-170
357520829381 Pectinesterase [Medicago truncatula] gi| 0.997 0.881 0.837 1e-167
>gi|255546301|ref|XP_002514210.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] gi|223546666|gb|EEF48164.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/336 (89%), Positives = 320/336 (95%)

Query: 2   TRTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLP 61
           TR +FSE QFMKWV FVG+LKHSVFK+AKNKLFP+YTLTV KNPA GDFT IQDAIDSLP
Sbjct: 48  TRVEFSEMQFMKWVKFVGKLKHSVFKTAKNKLFPSYTLTVDKNPAYGDFTSIQDAIDSLP 107

Query: 62  FINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTW 121
           FINLVRVVI+VHAGVYKEKV+IPP KSFIT+EGAGADKTI+QWGDTAQT G +GQP+GT+
Sbjct: 108 FINLVRVVIRVHAGVYKEKVSIPPLKSFITVEGAGADKTIIQWGDTAQTPGAKGQPMGTY 167

Query: 122 ASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLY 181
            SATFAVN+PYFIAKNITFKNTTPVP PGA+GKQAVAFRISADTA F GCKFLGAQDTLY
Sbjct: 168 NSATFAVNSPYFIAKNITFKNTTPVPPPGAIGKQAVAFRISADTAVFLGCKFLGAQDTLY 227

Query: 182 DHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFV 241
           DH+GRHYYKDCYIEGSVDFIFGN LSLFEGCHVHAIAQYTGALTAQGRSS+L+DTGFSFV
Sbjct: 228 DHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQYTGALTAQGRSSILDDTGFSFV 287

Query: 242 NCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGP 301
           NCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDP REMTVFYGQYKC GP
Sbjct: 288 NCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPTREMTVFYGQYKCTGP 347

Query: 302 GASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL 337
           GASFAGRVSW+RELTDEEAKPFISLSFIDGSEWIK+
Sbjct: 348 GASFAGRVSWSRELTDEEAKPFISLSFIDGSEWIKI 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436052|ref|XP_004135808.1| PREDICTED: probable pectinesterase 53-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489800|ref|XP_004158420.1| PREDICTED: probable pectinesterase 53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224122600|ref|XP_002330522.1| predicted protein [Populus trichocarpa] gi|222872456|gb|EEF09587.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147776052|emb|CAN63186.1| hypothetical protein VITISV_037092 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495321|ref|XP_003516527.1| PREDICTED: probable pectinesterase 53-like [Glycine max] Back     alignment and taxonomy information
>gi|356520820|ref|XP_003529058.1| PREDICTED: probable pectinesterase 53-like [Glycine max] Back     alignment and taxonomy information
>gi|356523858|ref|XP_003530551.1| PREDICTED: probable pectinesterase 53-like [Glycine max] Back     alignment and taxonomy information
>gi|356511389|ref|XP_003524409.1| PREDICTED: probable pectinesterase 53-like [Glycine max] Back     alignment and taxonomy information
>gi|357520829|ref|XP_003630703.1| Pectinesterase [Medicago truncatula] gi|355524725|gb|AET05179.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.994 0.874 0.808 3.6e-153
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.878 0.817 0.510 4.7e-80
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.908 0.751 0.468 1.5e-76
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.863 0.740 0.477 5.1e-74
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.860 0.870 0.451 1.8e-71
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.878 0.778 0.453 2.9e-71
TAIR|locus:2094652317 PME31 "pectin methylesterase 3 0.842 0.895 0.468 4.9e-69
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.810 0.775 0.460 4.4e-68
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.845 0.789 0.433 5.4e-63
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.851 0.795 0.444 6.9e-63
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 271/335 (80%), Positives = 302/335 (90%)

Query:     3 RTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLPF 62
             RTQ  E +FMKWV FVG LKHSVFK+AKNKLFP+YTLTV K    GDFTKIQDAIDSLP 
Sbjct:    49 RTQNPEDEFMKWVRFVGSLKHSVFKAAKNKLFPSYTLTVHKKSNKGDFTKIQDAIDSLPL 108

Query:    63 INLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWA 122
             IN VRVVIKVHAGVYKEKV+IPP K+FITIEG GA+KT V+WGDTAQT   +G P+GT+ 
Sbjct:   109 INFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYN 168

Query:   123 SATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYD 182
             SA+FAVN+P+F+AKNITF+NTTPVP PGAVGKQAVA R+SAD A F+GC+ LGAQDTLYD
Sbjct:   169 SASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYD 228

Query:   183 HVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVN 242
             H+GRHYYKDCYIEGSVDFIFGNALSL+EGCHVHAIA   GA+TAQGRSS+LEDTGFSFV 
Sbjct:   229 HLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFVK 288

Query:   243 CKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPG 302
             CKVTG+G LYLGRAWGPFSRVVFAYTYMDNII+P+GWYNWGDP+REMTVFYGQYKC G G
Sbjct:   289 CKVTGTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAG 348

Query:   303 ASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL 337
             A++ GRV+WARELTDEEAKPF+SL+FIDGSEWIKL
Sbjct:   349 ANYGGRVAWARELTDEEAKPFLSLTFIDGSEWIKL 383
GO:0005618 "cell wall" evidence=IEA;IDA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009411 "response to UV" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094652 PME31 "pectin methylesterase 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYZ3PME53_ARATH3, ., 1, ., 1, ., 1, 10.80890.99400.8746yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 0.0
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-122
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-119
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-118
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-117
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-108
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-103
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-90
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-88
PLN02497331 PLN02497, PLN02497, probable pectinesterase 7e-80
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-72
PLN02314586 PLN02314, PLN02314, pectinesterase 5e-70
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 8e-65
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-63
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 3e-63
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 8e-63
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 2e-62
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 9e-62
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 3e-61
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 9e-61
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 4e-60
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 6e-59
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 2e-58
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-58
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 3e-58
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-57
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 3e-56
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 9e-54
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 5e-53
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 9e-52
PLN02197588 PLN02197, PLN02197, pectinesterase 5e-45
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 4e-44
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 1e-43
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-27
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information 
 Score =  693 bits (1789), Expect = 0.0
 Identities = 279/336 (83%), Positives = 307/336 (91%)

Query: 2   TRTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAKNPAAGDFTKIQDAIDSLP 61
           TR Q  E+QFMKWV F+G LKHSVF+ AKNKLFP+YT+ V K PAAGDFT IQ AIDSLP
Sbjct: 34  TRVQAPEEQFMKWVRFMGSLKHSVFQKAKNKLFPSYTIVVDKKPAAGDFTTIQAAIDSLP 93

Query: 62  FINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTW 121
            INLVRVVIKV+AG Y+EKVNIPP K++IT+EGAGADKTI+QWGDTA T GP G+P+GT+
Sbjct: 94  VINLVRVVIKVNAGTYREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTY 153

Query: 122 ASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLY 181
            SATFAVN+PYFIAKNITFKNT PVP PGA+GKQAVA RISADTA F+GCKFLGAQDTLY
Sbjct: 154 GSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLY 213

Query: 182 DHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFV 241
           DH+GRHY+KDCYIEGSVDFIFGN LSL+EGCH+HAIA+  GALTAQ R S+LEDTGFSFV
Sbjct: 214 DHLGRHYFKDCYIEGSVDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFV 273

Query: 242 NCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGP 301
           NCKVTGSGALYLGRAWG FSRVVFAYTYMDNIIIP+GWYNWGDPNREMTVFYGQYKC GP
Sbjct: 274 NCKVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPNREMTVFYGQYKCTGP 333

Query: 302 GASFAGRVSWARELTDEEAKPFISLSFIDGSEWIKL 337
           GA+FAGRV+W+RELTDEEAKPFISLSFIDGSEW+KL
Sbjct: 334 GANFAGRVAWSRELTDEEAKPFISLSFIDGSEWLKL 369

Length = 369
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PLN02682369 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02773317 pectinesterase 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02197588 pectinesterase 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.42
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.83
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.68
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.52
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.28
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.47
KOG1777 625 consensus Putative Zn-finger protein [General func 97.27
PLN02682369 pectinesterase family protein 96.9
PLN02773317 pectinesterase 96.78
PLN02793443 Probable polygalacturonase 96.61
PLN02480343 Probable pectinesterase 96.61
PRK10531422 acyl-CoA thioesterase; Provisional 96.56
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.52
PLN02432293 putative pectinesterase 96.47
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.34
PLN02497331 probable pectinesterase 96.23
PLN02671359 pectinesterase 96.21
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.07
PLN02176340 putative pectinesterase 96.02
smart00656190 Amb_all Amb_all domain. 95.96
PLN02665366 pectinesterase family protein 95.93
PLN02634359 probable pectinesterase 95.85
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.81
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.68
PLN02916502 pectinesterase family protein 95.53
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.46
PLN02304379 probable pectinesterase 95.41
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.37
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.28
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.18
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.99
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.86
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.68
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.59
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.44
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.43
PLN02218431 polygalacturonase ADPG 94.3
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.29
PLN03003 456 Probable polygalacturonase At3g15720 94.17
PLN02197588 pectinesterase 94.02
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.0
PLN03010409 polygalacturonase 93.97
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.9
PLN02301548 pectinesterase/pectinesterase inhibitor 93.73
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.58
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.54
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.53
PLN02217670 probable pectinesterase/pectinesterase inhibitor 93.24
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.09
PLN02314586 pectinesterase 93.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.57
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 92.34
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.71
PLN02155394 polygalacturonase 91.69
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 91.46
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 88.97
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 88.01
PLN02188404 polygalacturonase/glycoside hydrolase family prote 87.13
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 86.2
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 85.9
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 85.7
>PLN02682 pectinesterase family protein Back     alignment and domain information 
Probab=100.00  E-value=2.2e-104  Score=767.69  Aligned_cols=335  Identities=83%  Similarity=1.398  Sum_probs=319.2

Q ss_pred             CcccccccccccccccccccchhhhhccccCCCCcceEEEcC-CCCCCCCccHHHHHHhCCCCCcceEEEEEeceeEeee
Q 019696            2 TRTQFSEQQFMKWVNFVGRLKHSVFKSAKNKLFPAYTLTVAK-NPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEK   80 (337)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~V~~-~g~~g~f~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~   80 (337)
                      .|++++++++|.||+.++...+++|+.+.++..|..+++|++ +| +|+|+|||+|||++|.++.+|++|+|+||+|+|+
T Consensus        34 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~p~~~i~V~~~~g-sGdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~Ek  112 (369)
T PLN02682         34 TRVQAPEEQFMKWVRFMGSLKHSVFQKAKNKLFPSYTIVVDKKPA-AGDFTTIQAAIDSLPVINLVRVVIKVNAGTYREK  112 (369)
T ss_pred             hhhhhhhHHHHHHHHHhcccccchhhcccccCCCCeEEEEeCCCC-CCCccCHHHHHhhccccCCceEEEEEeCceeeEE
Confidence            478899999999999999999999999999889999999999 47 8999999999999999988899999999999999


Q ss_pred             eeeCCCCccEEEEecCCCceEEEecCccccCCCCCCcccCccceeEEEEcCceEEEeeeeeeCCCCCCCCCCCCceEEEE
Q 019696           81 VNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFR  160 (337)
Q Consensus        81 v~I~~~kp~ItL~G~~~~~tvI~~~~~~~~~~~~g~~~gt~~satv~v~a~~f~~~nit~~Ns~~~~~~g~~~~qAvAl~  160 (337)
                      |.||+.||+|+|+|++.++|+|+|++.+...+++|.+.||..||||.|.+++|+++||||+|+++....+..++|||||+
T Consensus       113 V~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~  192 (369)
T PLN02682        113 VNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALR  192 (369)
T ss_pred             EEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEE
Confidence            99999999999999999999999999887777788888999999999999999999999999997655555678999999


Q ss_pred             EecCceEEEeeEEeeccceeEeccccEEEEccEEEcceeEEecceeeEEEeeEEEEeecCCCeEEeeccCCCCCcccEEE
Q 019696          161 ISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSF  240 (337)
Q Consensus       161 v~~d~~~f~nC~f~g~QDTL~~~~gr~~~~~c~I~G~vDfIfG~g~a~fe~c~i~~~~~~~g~ItA~~r~~~~~~~G~vf  240 (337)
                      +.+||++|++|+|+|||||||++.|||||++|+|+|+||||||+|+++||+|+|+++.+..|+||||+|.++.+++||||
T Consensus       193 v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF  272 (369)
T PLN02682        193 ISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGSVDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSF  272 (369)
T ss_pred             ecCCcEEEEcceEeccccceEECCCCEEEEeeEEcccccEEecCceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999876679999999987788999999


Q ss_pred             eccEEeecccEEeeeecccceeEEEEccccCcccccCCcccCCCCCCcceeEEEEEcccCCCCCCCCcceecccCCHHHH
Q 019696          241 VNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEA  320 (337)
Q Consensus       241 ~~c~it~~g~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~~~Rv~w~~~Lt~~~a  320 (337)
                      +||+|+++|.+||||||++|++|||++|+|+++|.|+||.+|+.+.++++++|+||+|+|||+++++||+|+++||++||
T Consensus       273 ~~C~itg~g~~yLGRpW~~yarvVf~~t~m~~~I~p~GW~~w~~~~~~~t~~faEy~ntGpGa~~s~Rv~w~~~Lt~~eA  352 (369)
T PLN02682        273 VNCKVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPNREMTVFYGQYKCTGPGANFAGRVAWSRELTDEEA  352 (369)
T ss_pred             EeeEecCCCceEeecCCCCcceEEEEeccCCCcCcCcccCcCCCCCCCCceEEEEecccCCCCCcCCCccccccCCHHHH
Confidence            99999999999999999999999999999999999999999998877889999999999999999999999999999999


Q ss_pred             cCcccccccCCCCCccC
Q 019696          321 KPFISLSFIDGSEWIKL  337 (337)
Q Consensus       321 ~~~t~~~fi~g~~W~~~  337 (337)
                      ++|+.++||+|++||||
T Consensus       353 ~~ft~~~fi~g~~Wl~~  369 (369)
T PLN02682        353 KPFISLSFIDGSEWLKL  369 (369)
T ss_pred             HhhhHhhccCCCCCCCC
Confidence            99999999999999996

>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 4e-47
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-39
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 6e-27
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 5e-19
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 5e-19
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 5e-18
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (469), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 166/306 (54%), Gaps = 28/306 (9%)
Query: 47  AGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGD 106
           +GD+  + +A+ + P  +  R VI++ AGVY+E V++P  K  I   G G   TI+    
Sbjct: 16  SGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASK 75
Query: 107 TAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTA 166
             Q          T+ SAT A     F+A++ITF+NT      GA   QAVA R+ +D +
Sbjct: 76  NVQDGST------TFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLS 124
Query: 167 TFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTG---A 223
            F+ C  L  QD+LY H  R ++ +C+I G+VDFIFGNA  + + C +HA    +G    
Sbjct: 125 AFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNM 184
Query: 224 LTAQGRSSLLEDTGFSFVNCKVTGSGAL---------YLGRAWGPFSRVVFAYTYMDNII 274
           +TAQGR+   ++TG      ++  +  L         YLGR W  +SR V   + + N+I
Sbjct: 185 VTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVI 244
Query: 275 IPKGWYNWGDPNREM-TVFYGQYKCKGPGASFAGRVSWA--RELTDE-EAKPFISLSFID 330
            P GW+ W D N  + T++YG+Y+  G GA+ +GRV+W   + +T   EA+ F   SFI 
Sbjct: 245 NPAGWFPW-DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIA 303
Query: 331 GSEWIK 336
           G  W+K
Sbjct: 304 GGSWLK 309
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-136
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-134
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-120
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-119
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-97
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  388 bits (998), Expect = e-136
 Identities = 107/317 (33%), Positives = 163/317 (51%), Gaps = 27/317 (8%)

Query: 35  PAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEG 94
               + VA + + GD+  + +A+ + P  +  R VI++ AGVY+E V++P  K  I   G
Sbjct: 5   VGPNVVVAADGS-GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLG 63

Query: 95  AGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGK 154
            G   TI+                 T+ SAT A     F+A++ITF+NT      GA   
Sbjct: 64  DGRTSTIITASKNV------QDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKH 112

Query: 155 QAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHV 214
           QAVA R+ +D + F+ C  L  QD+LY H  R ++ +C+I G+VDFIFGNA  + + C +
Sbjct: 113 QAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI 172

Query: 215 HAIAQYT---GALTAQGRSSLLEDTGFSFVNCKVTGSGAL---------YLGRAWGPFSR 262
           HA    +     +TAQGR+   ++TG      ++  +  L         YLGR W  +SR
Sbjct: 173 HARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSR 232

Query: 263 VVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWA---RELTDEE 319
            V   + + N+I P GW+ W       T++YG+Y+  G GA+ +GRV+W       +  E
Sbjct: 233 TVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTE 292

Query: 320 AKPFISLSFIDGSEWIK 336
           A+ F   SFI G  W+K
Sbjct: 293 AQGFTPGSFIAGGSWLK 309
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.66
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.4
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.76
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.29
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.85
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.56
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.5
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.49
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.48
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.39
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.38
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.32
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.31
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.3
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.18
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.12
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.08
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.07
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.74
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.69
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.54
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.48
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.46
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.46
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.38
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.27
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.25
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.14
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.83
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.53
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.49
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.13
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.04
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 92.66
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 92.62
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 92.44
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.08
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 82.51
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 82.49
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 82.15
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 81.5
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 81.31
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 80.85
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=3.5e-87  Score=642.23  Aligned_cols=291  Identities=36%  Similarity=0.694  Sum_probs=270.7

Q ss_pred             CcceEEEcCCCCCCCCccHHHHHHhCCCCCcceEEEEEeceeEeeeeeeCCCCccEEEEecCCCceEEEecCccccCCCC
Q 019696           35 PAYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPR  114 (337)
Q Consensus        35 p~~~i~V~~~g~~g~f~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~v~I~~~kp~ItL~G~~~~~tvI~~~~~~~~~~~~  114 (337)
                      +..+++|+++| +|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++.++|+|+++....+    
T Consensus         5 ~~~~i~V~~dG-sg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~----   79 (319)
T 1gq8_A            5 VGPNVVVAADG-SGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQD----   79 (319)
T ss_dssp             SCCSEEECTTS-CSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTT----
T ss_pred             ccceEEECCCC-CCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccC----
Confidence            45679999999 9999999999999999998999999999999999999999999999999999999999876432    


Q ss_pred             CCcccCccceeEEEEcCceEEEeeeeeeCCCCCCCCCCCCceEEEEEecCceEEEeeEEeeccceeEeccccEEEEccEE
Q 019696          115 GQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYI  194 (337)
Q Consensus       115 g~~~gt~~satv~v~a~~f~~~nit~~Ns~~~~~~g~~~~qAvAl~v~~d~~~f~nC~f~g~QDTL~~~~gr~~~~~c~I  194 (337)
                      |  .+++.++||.|.+++|+++||||+|+++.     .++||+||++.+|++.|+||+|+|+|||||++.+||||++|+|
T Consensus        80 g--~~t~~satv~v~a~~f~~~nlt~~Nt~g~-----~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I  152 (319)
T 1gq8_A           80 G--STTFNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFI  152 (319)
T ss_dssp             T--CCTGGGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEE
T ss_pred             C--CCccceEEEEEECCCEEEEEeEeEccCCC-----cCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEE
Confidence            2  56889999999999999999999999864     3469999999999999999999999999999999999999999


Q ss_pred             EcceeEEecceeeEEEeeEEEEeec---CCCeEEeeccCCCCCcccEEEeccEEeecc---------cEEeeeeccccee
Q 019696          195 EGSVDFIFGNALSLFEGCHVHAIAQ---YTGALTAQGRSSLLEDTGFSFVNCKVTGSG---------ALYLGRAWGPFSR  262 (337)
Q Consensus       195 ~G~vDfIfG~g~a~fe~c~i~~~~~---~~g~ItA~~r~~~~~~~G~vf~~c~it~~g---------~~yLGRpW~~~s~  262 (337)
                      +|+||||||++.++||+|+|++++.   +.++||||+|.++.+++||||+||+|++++         ++||||||++|+|
T Consensus       153 ~G~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr  232 (319)
T 1gq8_A          153 AGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSR  232 (319)
T ss_dssp             EESSSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCE
T ss_pred             EeeeeEEecCCcEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcce
Confidence            9999999999999999999999752   468999999988899999999999999764         6999999999999


Q ss_pred             EEEEccccCcccccCCcccCCCCCCcceeEEEEEcccCCCCCCCCcceecc--cC-CHHHHcCcccccccCCCCCccC
Q 019696          263 VVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWAR--EL-TDEEAKPFISLSFIDGSEWIKL  337 (337)
Q Consensus       263 vvf~~t~l~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~~~Rv~w~~--~L-t~~~a~~~t~~~fi~g~~W~~~  337 (337)
                      +||++|+|+++|+|+||.+|+...+.++++|+||+|+|||+++++||+|++  +| +++||++|+.++||+|++|||.
T Consensus       233 ~v~~~t~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~  310 (319)
T 1gq8_A          233 TVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA  310 (319)
T ss_dssp             EEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGG
T ss_pred             EEEEeccCCCcccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCC
Confidence            999999999999999999998877788999999999999999999999996  66 4699999999999999999983
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-115
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-86
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  334 bits (857), Expect = e-115
 Identities = 109/316 (34%), Positives = 165/316 (52%), Gaps = 27/316 (8%)

Query: 36  AYTLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGA 95
              + VA + + GD+  + +A+ + P  +  R VI++ AGVY+E V++P  K  I   G 
Sbjct: 6   GPNVVVAADGS-GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD 64

Query: 96  GADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQ 155
           G   TI+      Q          T+ SAT A     F+A++ITF+NT      GA   Q
Sbjct: 65  GRTSTIITASKNVQDGS------TTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQ 113

Query: 156 AVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVH 215
           AVA R+ +D + F+ C  L  QD+LY H  R ++ +C+I G+VDFIFGNA  + + C +H
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173

Query: 216 AIAQYTG---ALTAQGRSSLLEDTGFSFVNCKVTGSGAL---------YLGRAWGPFSRV 263
           A    +G    +TAQGR+   ++TG      ++  +  L         YLGR W  +SR 
Sbjct: 174 ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRT 233

Query: 264 VFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWA---RELTDEEA 320
           V   + + N+I P GW+ W       T++YG+Y+  G GA+ +GRV+W       +  EA
Sbjct: 234 VVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEA 293

Query: 321 KPFISLSFIDGSEWIK 336
           + F   SFI G  W+K
Sbjct: 294 QGFTPGSFIAGGSWLK 309
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.17
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.87
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.2
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.22
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.21
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.74
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.52
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.4
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.22
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.08
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.87
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.78
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.34
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.32
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.26
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.85
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.56
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 86.75
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 85.81
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 85.33
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 84.01
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 80.31
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=4.5e-92  Score=671.94  Aligned_cols=287  Identities=37%  Similarity=0.701  Sum_probs=269.7

Q ss_pred             eEEEcCCCCCCCCccHHHHHHhCCCCCcceEEEEEeceeEeeeeeeCCCCccEEEEecCCCceEEEecCccccCCCCCCc
Q 019696           38 TLTVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQP  117 (337)
Q Consensus        38 ~i~V~~~g~~g~f~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~v~I~~~kp~ItL~G~~~~~tvI~~~~~~~~~~~~g~~  117 (337)
                      +++|++|| +|+|+|||+|||++|.++++|++|+|+||+|+|+|+||++||+|+|+|++++.|+|+++.++.+    +  
T Consensus         8 ~i~V~~dG-sGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~----~--   80 (319)
T d1gq8a_           8 NVVVAADG-SGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQD----G--   80 (319)
T ss_dssp             SEEECTTS-CSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTT----T--
T ss_pred             CEEECCCC-CCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccC----C--
Confidence            59999999 9999999999999999999999999999999999999999999999999999999999877643    2  


Q ss_pred             ccCccceeEEEEcCceEEEeeeeeeCCCCCCCCCCCCceEEEEEecCceEEEeeEEeeccceeEeccccEEEEccEEEcc
Q 019696          118 IGTWASATFAVNAPYFIAKNITFKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGS  197 (337)
Q Consensus       118 ~gt~~satv~v~a~~f~~~nit~~Ns~~~~~~g~~~~qAvAl~v~~d~~~f~nC~f~g~QDTL~~~~gr~~~~~c~I~G~  197 (337)
                      .++..++||.|.+++|+++||||+|+++.     .++||+||++.+||++|++|+|+|||||||++.|||||++|+|+|+
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~-----~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~  155 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGT  155 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEES
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCC-----CCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEee
Confidence            35889999999999999999999999864     3569999999999999999999999999999999999999999999


Q ss_pred             eeEEecceeeEEEeeEEEEeecC---CCeEEeeccCCCCCcccEEEeccEEeecc---------cEEeeeecccceeEEE
Q 019696          198 VDFIFGNALSLFEGCHVHAIAQY---TGALTAQGRSSLLEDTGFSFVNCKVTGSG---------ALYLGRAWGPFSRVVF  265 (337)
Q Consensus       198 vDfIfG~g~a~fe~c~i~~~~~~---~g~ItA~~r~~~~~~~G~vf~~c~it~~g---------~~yLGRpW~~~s~vvf  265 (337)
                      ||||||+++++||+|+|+++...   .++||||+|.++.+++||||.+|+|++++         ++||||||+++++|||
T Consensus       156 vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf  235 (319)
T d1gq8a_         156 VDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVV  235 (319)
T ss_dssp             SSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEE
T ss_pred             ccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEE
Confidence            99999999999999999997532   46999999988899999999999999763         5799999999999999


Q ss_pred             EccccCcccccCCcccCCCCCCcceeEEEEEcccCCCCCCCCcceec---ccCCHHHHcCcccccccCCCCCcc
Q 019696          266 AYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWA---RELTDEEAKPFISLSFIDGSEWIK  336 (337)
Q Consensus       266 ~~t~l~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~~~Rv~w~---~~Lt~~~a~~~t~~~fi~g~~W~~  336 (337)
                      ++|+|+++|.|+||.+|+...+.++++|+||+|+|||+++++||+|+   ++|+++||++|+.++||+|++|||
T Consensus       236 ~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~  309 (319)
T d1gq8a_         236 MQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLK  309 (319)
T ss_dssp             ESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSG
T ss_pred             EecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccc
Confidence            99999999999999999988888999999999999999999999997   589999999999999999999998
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure