BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019697
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 143/246 (58%), Gaps = 16/246 (6%)
Query: 89 YPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRG--------VHFRRAGPREKVYF 140
YPNP KK + + F D + N +D P + A R +++F
Sbjct: 39 YPNPSKKYSS----RTEFRDKTDYIMYNPR-PRDEPSSENPVSVSPLLCELAAARSRIHF 93
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLT---L 197
E IVTCGG+CPG+N VIR I +Y V ++G GY G K + T L
Sbjct: 94 NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 198 SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
V +IH GGTIL +SRG D ++VD +E G+N ++ +GGDGTQ+GA +I +E +
Sbjct: 154 HRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAK 213
Query: 258 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMG 317
+RG+ ++V G+PKTIDND++ ++FGF TAVE+A +AI AA+ E S GVG+VKLMG
Sbjct: 214 RRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMG 273
Query: 318 RYSGFI 323
R SGFI
Sbjct: 274 RDSGFI 279
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 14/191 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V Y +GV E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA K++ + G
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGRHA 173
Query: 321 GFISMYATLAS 331
G I++Y+ LA
Sbjct: 174 GDIALYSGLAG 184
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 14/191 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V Y +GV E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA K++ + G
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHA 173
Query: 321 GFISMYATLAS 331
G I++++ LA
Sbjct: 174 GDIALWSGLAG 184
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 14/191 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V Y +GV E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA K++ + G
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHA 173
Query: 321 GFISMYATLAS 331
G I++++ LA
Sbjct: 174 GDIALWSGLAG 184
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V S + E++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 209 GGTILRTSR--GGHDTN---KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L ++R D N ++N++ RGI+ + +IGGDG+ GA + + +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GF TA+ AI+ + S + +V++MGRY G +
Sbjct: 119 PCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGRYCGDL 177
Query: 324 SMYATLA 330
++ A +A
Sbjct: 178 TLAAAIA 184
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 14/191 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N +R +V +Y E+ GI GY G S L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVV--RKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGT L T+R K + N++ GI + +IGGDG+ GA K++ + G
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHA 173
Query: 321 GFISMYATLAS 331
G I+++A LA
Sbjct: 174 GDIALWAGLAG 184
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201
S + I+ GG PG + VI + + ++ G +GG G + + L+ +
Sbjct: 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 129
Query: 202 VNDIHKRGG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
+N GG I+ + R +T NK + ++ +N + IIGGD + AA++ +
Sbjct: 130 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 189
Query: 257 EKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVK 314
+K G + V G+PKTID D+ I+ SFGFD+A + I + S + VK
Sbjct: 190 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 249
Query: 315 LMGRYSGFISMYATLAS 331
LMGR + +++ L +
Sbjct: 250 LMGRSASHVALECALKT 266
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 14/190 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R I+T GG PG+N +R V ++ G+ E+ GI G+ G + + L + V +
Sbjct: 3 RIGILTSGGDAPGMNAAVRA-VTRVAIANGL-EVFGIRYGFAGLVAGDIFPLESEDVAHL 60
Query: 206 HKRGGTILRTSR---GGHDTNKI--VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
GT L ++R + ++ ++ ++ GI+ V +IGGDG+ GA ++ + G
Sbjct: 61 INVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTRHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + G+DTA A AI+ + S + V IV +MGR
Sbjct: 117 FNSI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIR-DTASSHHRVFIVNVMGRNC 173
Query: 321 GFISMYATLA 330
G I+M +A
Sbjct: 174 GDIAMRVGVA 183
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 146 RACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFY--SKNTLTLSPKVV 202
+ ++T GG PG+N +R +V G+ + G D + + GY G K ++ + V
Sbjct: 7 KIAVMTSGGDSPGMNAAVRAVVRTGIHF--GCD-VFAVYEGYEGLLRGGKYLKKMAWEDV 63
Query: 203 NDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-- 255
GGT++ T+R + N+ +GI+ + + GGDG+ GA L E
Sbjct: 64 RGWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWP 123
Query: 256 -------VEKRGLQVAVA--------GIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300
E R + VA G+ +IDND++ D + G +A+E ++
Sbjct: 124 SLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYID 183
Query: 301 VEVESVENGVGIVKLMGRYSGFISMYATLAS 331
+S +V++MGR+ G++++ A +A+
Sbjct: 184 ATAKSHSRAF-VVEVMGRHCGWLALMAGIAT 213
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 4/152 (2%)
Query: 182 IEGGYRGFYSKNTLT-LSPKVVNDIHKRGGTILRTSR--GGHDTNKIVDNIEDRGINQVY 238
I G+ G + LS V + H GG+ + T+R D I + ++ +
Sbjct: 429 IMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLI 488
Query: 239 IIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
I+GG +G + L + + + IP T+ N++ + S G DT + +
Sbjct: 489 ILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTD 548
Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATL 329
+ V + ++ G +SG+I+ + L
Sbjct: 549 DIKQSASATRRRVFVCEVQGGHSGYIASFTGL 580
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 40/246 (16%)
Query: 123 SPRGVHFRRAGPR---EKVYFKSDE-------VRACI--VTCGGLCPGINTVIREIVCGL 170
+P V+ R P+ EK Y D+ VR I +T GG PG+N +R +V
Sbjct: 148 NPFAVNERSLLPKVSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVV--R 205
Query: 171 SYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHK---RGGTILRTSRGGHDTN---- 223
+ +Y ++ I GY G + +D+ GGT + T+R
Sbjct: 206 AGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGR 265
Query: 224 -KIVDNIEDRGINQVYIIGGDGTQKGA--------ALIYKEVEKRGLQ---------VAV 265
K N+ D GI+ + + GGDG+ GA +LI + ++ + + +
Sbjct: 266 LKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNI 325
Query: 266 AGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISM 325
G +IDND++ D + G ++++ RAI+ S IV++MGR+ G++ +
Sbjct: 326 CGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSRAF-IVEVMGRHCGWLGL 384
Query: 326 YATLAS 331
A LA+
Sbjct: 385 LAGLAT 390
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
L++ + IP TI N++ + S G DT + + + N V +V++ G S
Sbjct: 691 LRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNS 750
Query: 321 GFISMYATLA 330
G+I+ +A LA
Sbjct: 751 GYIATHAQLA 760
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 29/221 (13%)
Query: 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNT 194
E+V + + + I+T GG PG+N +R + G+ YG ++ GY G
Sbjct: 202 EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGC-KVYACYEGYTGLVKGGD 258
Query: 195 L--TLSPKVVNDIHKRGGTILRTSRGGHDTNKI-----VDNIEDRGINQVYIIGGDGTQK 247
+ L + V + GGTI+ T+R + N+ GI+ + + GGDG+
Sbjct: 259 MLKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLT 318
Query: 248 GAAL-----------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290
GA L I KE + + + G+ +IDND+ D + G +++E
Sbjct: 319 GADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLE 378
Query: 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 331
++ S +V++MGR+ G++ + + +A+
Sbjct: 379 RIIELVDYIDATAASHSRAF-VVEVMGRHCGWLGLMSGIAT 418
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 12/196 (6%)
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL-TLSP 199
+S + I+ G +N R V L+ + + I G+ G + L+
Sbjct: 595 ESSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNW 652
Query: 200 KVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
V D H GG+ + T+R D + + + + IIGG + +Y+
Sbjct: 653 IDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDA 709
Query: 258 KRG----LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIV 313
R + + +P T+ N++ + S G DT + +A + +V
Sbjct: 710 ARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVV 769
Query: 314 KLMGRYSGFISMYATL 329
++ G YSG+++ YA L
Sbjct: 770 EVQGGYSGYLASYAGL 785
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY--SKNTLTLSPKVVNDIH 206
++T GG G+N +R +V ++ + + GY+G + + + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVV--RVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 207 KRGGTILRTSRGG-----HDTNKIVDNIEDRGINQVYIIGGDGTQKGA------------ 249
+ GGT++ ++R + N+ RGI + +IGGDG+ GA
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 250 -----ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
I E R + + G+ +IDND D + G D+A+ ++A +
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 305 SVENGVGIVKLMGRYSGFISMYATLA 330
S + ++++MGR+ G++++ +L+
Sbjct: 198 SHQRTF-VLEVMGRHCGYLALVTSLS 222
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 11/200 (5%)
Query: 128 HFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYR 187
H R P KS ++ G G+N +R V + + G + +L + G+
Sbjct: 390 HIRPPAP------KSGSYTVAVMNVGAPAAGMNAAVRSTV-RIGLIQG-NRVLVVHDGFE 441
Query: 188 GFYSKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGG-DG 244
G V +GG+ L + R +I NI I + IIGG +
Sbjct: 442 GPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEA 501
Query: 245 TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
G L+ + L + IP T+ N++ D S G DTA+ +
Sbjct: 502 YTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAA 561
Query: 305 SVENGVGIVKLMGRYSGFIS 324
+ V I++ MG Y G+++
Sbjct: 562 GTKRRVFIIETMGGYCGYLA 581
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIH- 206
++T GG PG+N+ +R IV + G + +EG Y G P+ + + H
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRS-AIFKGCRAFVVMEG-YEGLVRGG-----PEYIKEFHW 59
Query: 207 -------KRGGTILRTSRGGHDTNKI-----VDNIEDRGINQVYIIGGDGTQKGAAL--- 251
GGT + T+R + ++ + G++ + + GGDG+ GA L
Sbjct: 60 EDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRS 119
Query: 252 --------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
I E +R + + G +IDND++ D + G +A++ +AI+
Sbjct: 120 EWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID 179
Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 331
S +V++MGR G++++ A +A+
Sbjct: 180 YVEATANSHSRAF-VVEVMGRNCGWLALLAGIAT 212
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 106/283 (37%), Gaps = 28/283 (9%)
Query: 72 VLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTF---VSPEDAVAQNIVIQKDSPRGVH 128
L+ + + L P P+PL +V++ V AVA+ I KD R +
Sbjct: 304 TLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMS 362
Query: 129 FR---------------RAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSY- 172
R A E K ++ IV G GIN+ + + +Y
Sbjct: 363 LRDTEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMA---TYC 419
Query: 173 MYGVDEILGIEGGYRGFYSKNTL-TLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDN 228
M I G+ G ++ +L+ K + RGG+ + T+R D I
Sbjct: 420 MSQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMIAYY 479
Query: 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDT 287
+ + + I+GG + + + E ++ + IP T+ N++ + S G DT
Sbjct: 480 FQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDT 539
Query: 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLA 330
A+ + S +V G SG+++ YA+LA
Sbjct: 540 ALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLA 582
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 205 IHKRGGT-------ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
IH GG + S + ++++ I + GG +Q A + + +
Sbjct: 69 IHTPGGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLAD 128
Query: 258 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV---ENGVGIVK 314
+ G + G+PKT+DND+ D GF + + + A ++++S+ V I++
Sbjct: 129 RMGYPITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILE 188
Query: 315 LMGRYSGFISMYATLASR 332
+MGR++G+I+ LA +
Sbjct: 189 VMGRHAGWIAAAGGLAGQ 206
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 268 IPKTIDNDIAVIDKSFGFDT-----AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+PKT+DND+ + D GF + AV + + + A + S + V ++++MGR++G+
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK--VFVLEVMGRHAGW 196
Query: 323 ISMYATLAS 331
I+ LAS
Sbjct: 197 IAAAGGLAS 205
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 62 SNQKVHNDGFVLEDVPHLTNFLPDLP 87
S Q H D FVL DVP LP LP
Sbjct: 147 STQTEHPDRFVLVDVPEPAQLLPALP 172
>pdb|1VP8|A Chain A, Crystal Structure Of An AlphaBETA DOMAIN OF A PUTATIVE
PYRUVATE Kinase (Af0103) From Archaeoglobus Fulgidus Dsm
4304 At 1.30 A Resolution
Length = 201
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 21/113 (18%)
Query: 186 YRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT 245
+ GF + T P+V ++ KRG I+R S I+ +E R I++ +GG
Sbjct: 75 HTGFVREGENTXPPEVEEELRKRGAKIVRQSH-------ILSGLE-RSISRK--LGGVSR 124
Query: 246 QKGAALIYKEVEKRGLQVAV---------AGIPKTIDNDIAVIDKSFGFDTAV 289
+ A + + GL+V V IP I+ +AV +S G DTAV
Sbjct: 125 TEAIAEALRSLFGHGLKVCVEITIXAADSGAIP--IEEVVAVGGRSRGADTAV 175
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
+V A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MVNAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration
Of Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
+V A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MVNAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
+V A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MVNAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase
Type1, Complexed With Nad+
Length = 267
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVA 114
V A+ S +K N G +E H+ + + PL + ++ ED
Sbjct: 188 VNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLI-------EDDAL 240
Query: 115 QNIVIQKDSPRGVHFRRAGPREKVYFK 141
+++ + +G+HF+ G +E +YF+
Sbjct: 241 NGAIMKITTSKGIHFQDYGSKENLYFQ 267
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced
With Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced
With Trp
Length = 310
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
++ A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MINAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At
Ph 6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme
To Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
++ A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MINAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
++ A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MINAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 28 LNPVFHKFNFDSRNFEIKPLV-SRQNRPVVVAVRSSNQKVHNDGFVL 73
L P +KFNFD ++ P++ S + + V+ RS+N +++ +G +L
Sbjct: 243 LCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCIL 289
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 28 LNPVFHKFNFDSRNFEIKPLV-SRQNRPVVVAVRSSNQKVHNDGFVL 73
L P +KFNFD ++ P++ S + + V+ RS+N +++ +G +L
Sbjct: 243 LCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCIL 289
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 211 TILRTSRGGHDTNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268
T +TS GG +TNK NIE + YI G + +RGL A+AG
Sbjct: 284 TKCQTSMGGINTNKTFQNIERNALGDCPKYIKSGQLKLATGLRNVPSIGERGLFGAIAGF 343
Query: 269 PKTIDNDIAVIDKSFGFDTAVEEA----------QRAINAAHVEVESVENGVGIVKLMGR 318
+ +I+ +GF E+ Q+AIN ++ ++ I K+ G
Sbjct: 344 IE--GGWPGLINGWYGFQHQNEQGTGIAADKTSTQKAINEITTKINNI-----IEKMNGN 396
Query: 319 YSGFISMYATLASR 332
Y + + R
Sbjct: 397 YDSIRGEFNQVEKR 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,641,207
Number of Sequences: 62578
Number of extensions: 424811
Number of successful extensions: 1124
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 36
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)