Query 019697
Match_columns 337
No_of_seqs 229 out of 1298
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 7.9E-81 1.7E-85 628.8 23.7 279 49-337 2-280 (484)
2 PRK06830 diphosphate--fructose 100.0 7E-73 1.5E-77 567.8 21.5 251 86-337 17-276 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 1E-72 2.2E-77 569.0 22.3 265 73-337 4-280 (459)
4 PLN02884 6-phosphofructokinase 100.0 1.1E-66 2.3E-71 519.4 21.4 210 127-337 36-247 (411)
5 cd00764 Eukaryotic_PFK Phospho 100.0 5.3E-66 1.2E-70 544.4 18.2 263 70-337 303-582 (762)
6 TIGR02478 6PF1K_euk 6-phosphof 100.0 5.4E-63 1.2E-67 522.4 17.2 264 70-337 300-582 (745)
7 cd00363 PFK Phosphofructokinas 100.0 2E-58 4.3E-63 450.4 19.9 189 145-337 1-194 (338)
8 TIGR02482 PFKA_ATP 6-phosphofr 100.0 5.5E-58 1.2E-62 441.3 19.0 183 146-337 1-188 (301)
9 PLN03028 pyrophosphate--fructo 100.0 1.2E-57 2.5E-62 471.5 22.0 212 125-337 57-278 (610)
10 cd00763 Bacterial_PFK Phosphof 100.0 1.2E-57 2.7E-62 441.6 18.7 183 145-337 1-188 (317)
11 COG0205 PfkA 6-phosphofructoki 100.0 1.7E-57 3.7E-62 444.3 18.8 185 144-337 2-191 (347)
12 TIGR02477 PFKA_PPi diphosphate 100.0 4.5E-57 9.7E-62 462.9 22.7 248 80-337 6-266 (539)
13 PF00365 PFK: Phosphofructokin 100.0 6.1E-57 1.3E-61 430.4 17.2 184 145-337 1-189 (282)
14 PRK06555 pyrophosphate--fructo 100.0 1.6E-56 3.4E-61 444.5 20.3 187 145-331 4-210 (403)
15 cd00765 Pyrophosphate_PFK Phos 100.0 2.2E-56 4.7E-61 458.0 21.8 248 80-337 11-271 (550)
16 PRK07085 diphosphate--fructose 100.0 1.8E-56 4E-61 459.4 21.3 247 79-337 10-269 (555)
17 PRK03202 6-phosphofructokinase 100.0 1.7E-56 3.7E-61 434.2 19.3 183 145-337 2-189 (320)
18 PRK14072 6-phosphofructokinase 100.0 2.5E-56 5.5E-61 446.1 20.2 187 145-331 4-203 (416)
19 PLN02251 pyrophosphate-depende 100.0 1.3E-55 2.9E-60 453.2 22.0 246 80-337 37-295 (568)
20 TIGR02483 PFK_mixed phosphofru 100.0 1E-55 2.2E-60 429.4 19.2 182 146-336 1-189 (324)
21 PRK14071 6-phosphofructokinase 100.0 1.8E-55 4E-60 432.8 19.3 186 144-337 4-204 (360)
22 cd00764 Eukaryotic_PFK Phospho 100.0 4.4E-54 9.5E-59 454.1 19.4 191 143-337 2-216 (762)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 2E-53 4.4E-58 449.7 20.0 189 145-337 1-213 (745)
24 PTZ00468 phosphofructokinase f 100.0 6.6E-53 1.4E-57 457.5 21.7 247 80-337 39-301 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 8.5E-52 1.8E-56 451.4 24.6 194 143-337 176-376 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 4.7E-49 1E-53 430.0 20.1 192 142-337 834-1033(1419)
27 PTZ00468 phosphofructokinase f 100.0 4.2E-41 9.1E-46 365.8 20.0 186 144-333 675-907 (1328)
28 KOG2440 Pyrophosphate-dependen 100.0 1.1E-38 2.4E-43 329.9 8.6 268 70-337 44-337 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 3.9E-35 8.4E-40 303.7 9.3 255 70-334 290-564 (666)
30 PRK04761 ppnK inorganic polyph 93.5 0.22 4.8E-06 47.6 7.0 60 227-301 13-81 (246)
31 PRK04885 ppnK inorganic polyph 93.3 0.28 6.2E-06 47.2 7.3 56 233-301 35-92 (265)
32 PRK14077 pnk inorganic polypho 93.3 0.29 6.3E-06 47.7 7.4 54 233-301 64-119 (287)
33 PRK00561 ppnK inorganic polyph 92.6 0.35 7.7E-06 46.5 6.9 62 223-299 18-87 (259)
34 PRK03501 ppnK inorganic polyph 91.9 0.55 1.2E-05 45.3 7.3 56 233-301 39-96 (264)
35 PRK03372 ppnK inorganic polyph 91.4 0.36 7.8E-06 47.5 5.6 55 233-302 72-128 (306)
36 PRK14075 pnk inorganic polypho 91.3 0.65 1.4E-05 44.3 7.1 52 232-301 40-93 (256)
37 PRK01911 ppnK inorganic polyph 91.1 0.46 1E-05 46.4 5.9 56 233-303 64-121 (292)
38 TIGR01918 various_sel_PB selen 91.0 0.81 1.8E-05 47.1 7.7 119 143-263 222-367 (431)
39 TIGR01917 gly_red_sel_B glycin 91.0 0.8 1.7E-05 47.1 7.6 123 143-267 222-371 (431)
40 PRK04539 ppnK inorganic polyph 90.3 0.53 1.2E-05 46.0 5.6 55 233-302 68-124 (296)
41 PRK02649 ppnK inorganic polyph 90.2 0.54 1.2E-05 46.2 5.6 55 233-302 68-124 (305)
42 PF01513 NAD_kinase: ATP-NAD k 90.2 0.23 4.9E-06 47.8 2.8 65 222-301 65-131 (285)
43 PRK03378 ppnK inorganic polyph 90.1 0.71 1.5E-05 45.0 6.3 53 233-300 63-117 (292)
44 COG3199 Predicted inorganic po 89.9 0.34 7.3E-06 48.6 3.8 51 220-276 87-137 (355)
45 PRK13337 putative lipid kinase 89.2 2.2 4.7E-05 41.1 8.8 70 219-294 43-112 (304)
46 PLN02935 Bifunctional NADH kin 88.3 0.88 1.9E-05 47.8 5.7 55 233-302 262-318 (508)
47 cd06321 PBP1_ABC_sugar_binding 88.1 19 0.00041 32.6 13.9 127 146-314 1-128 (271)
48 PRK11914 diacylglycerol kinase 87.8 1.1 2.4E-05 43.0 5.8 69 220-296 51-120 (306)
49 PRK01231 ppnK inorganic polyph 87.7 1 2.3E-05 43.9 5.6 55 233-302 62-118 (295)
50 PLN02929 NADH kinase 87.5 0.99 2.1E-05 44.5 5.3 64 232-301 63-136 (301)
51 PRK13055 putative lipid kinase 87.4 1.8 3.8E-05 42.5 7.1 63 219-287 45-107 (334)
52 PRK13054 lipid kinase; Reviewe 87.4 2.6 5.6E-05 40.5 8.0 71 219-294 42-113 (300)
53 PRK02231 ppnK inorganic polyph 86.7 1.3 2.9E-05 42.8 5.6 52 233-299 42-95 (272)
54 PRK03708 ppnK inorganic polyph 85.5 0.85 1.8E-05 44.1 3.6 53 232-300 56-110 (277)
55 PRK02645 ppnK inorganic polyph 85.3 1.2 2.7E-05 43.5 4.7 55 233-301 57-114 (305)
56 PRK02155 ppnK NAD(+)/NADH kina 83.9 2.1 4.5E-05 41.7 5.6 53 233-300 63-117 (291)
57 PRK01185 ppnK inorganic polyph 83.6 2.4 5.1E-05 41.1 5.8 52 233-302 52-105 (271)
58 PLN02958 diacylglycerol kinase 83.2 7.9 0.00017 40.3 9.8 99 177-278 112-215 (481)
59 TIGR03702 lip_kinase_YegS lipi 83.2 5.1 0.00011 38.4 7.8 61 215-277 34-95 (293)
60 PRK13059 putative lipid kinase 83.0 4.2 9.1E-05 39.1 7.2 63 228-296 51-113 (295)
61 PLN02727 NAD kinase 82.4 2.1 4.5E-05 48.1 5.4 55 233-302 743-799 (986)
62 PRK14076 pnk inorganic polypho 81.7 2.5 5.4E-05 44.9 5.5 54 233-301 348-403 (569)
63 COG1570 XseA Exonuclease VII, 81.7 7.7 0.00017 40.2 8.8 96 140-267 131-230 (440)
64 PRK00861 putative lipid kinase 80.6 4 8.6E-05 39.1 6.1 66 219-292 43-108 (300)
65 PF02601 Exonuc_VII_L: Exonucl 79.5 18 0.00038 35.1 10.2 117 140-291 10-139 (319)
66 PF00465 Fe-ADH: Iron-containi 77.8 3.6 7.7E-05 40.6 4.9 57 220-276 65-135 (366)
67 cd08180 PDD 1,3-propanediol de 77.7 4.8 0.0001 39.4 5.7 56 220-275 65-122 (332)
68 cd08173 Gro1PDH Sn-glycerol-1- 77.5 4.6 9.9E-05 39.6 5.5 52 220-276 65-116 (339)
69 cd08170 GlyDH Glycerol dehydro 76.0 5 0.00011 39.4 5.4 52 220-276 64-115 (351)
70 PRK13057 putative lipid kinase 76.0 6.8 0.00015 37.3 6.1 52 220-277 38-89 (287)
71 cd08172 GlyDH-like1 Glycerol d 75.5 4.6 9.9E-05 39.8 4.9 51 220-275 63-113 (347)
72 cd08551 Fe-ADH iron-containing 75.0 5.7 0.00012 39.3 5.5 56 220-275 67-135 (370)
73 cd01537 PBP1_Repressors_Sugar_ 74.8 58 0.0013 28.5 14.7 126 146-315 1-126 (264)
74 PF00781 DAGK_cat: Diacylglyce 74.8 2.9 6.2E-05 35.0 2.9 65 221-291 41-108 (130)
75 PRK12361 hypothetical protein; 74.3 10 0.00022 39.8 7.4 54 219-277 283-336 (547)
76 COG0061 nadF NAD kinase [Coenz 74.2 6.7 0.00015 37.9 5.6 54 232-300 54-109 (281)
77 PRK00843 egsA NAD(P)-dependent 73.4 6.9 0.00015 38.7 5.6 52 220-276 74-125 (350)
78 cd07766 DHQ_Fe-ADH Dehydroquin 72.5 6.1 0.00013 38.3 5.0 53 220-275 65-117 (332)
79 PRK06186 hypothetical protein; 72.4 7.3 0.00016 37.0 5.3 58 233-306 53-112 (229)
80 cd08177 MAR Maleylacetate redu 71.5 8.6 0.00019 37.7 5.8 51 220-275 64-114 (337)
81 cd08186 Fe-ADH8 Iron-containin 71.2 8.2 0.00018 38.6 5.7 52 220-271 71-136 (383)
82 COG1597 LCB5 Sphingosine kinas 71.1 19 0.0004 35.2 7.9 71 220-298 45-117 (301)
83 PRK15458 tagatose 6-phosphate 70.9 1.1E+02 0.0023 32.0 13.5 139 146-313 16-172 (426)
84 cd08195 DHQS Dehydroquinate sy 70.9 5.2 0.00011 39.4 4.1 50 220-272 69-121 (345)
85 cd08189 Fe-ADH5 Iron-containin 70.7 12 0.00025 37.4 6.5 53 220-272 70-136 (374)
86 cd06533 Glyco_transf_WecG_TagA 70.2 18 0.00039 32.2 7.1 87 144-242 46-133 (171)
87 PRK00002 aroB 3-dehydroquinate 70.0 6 0.00013 39.2 4.4 50 220-272 76-128 (358)
88 cd03822 GT1_ecORF704_like This 69.5 60 0.0013 29.8 10.7 83 146-241 1-84 (366)
89 cd08194 Fe-ADH6 Iron-containin 69.5 8.7 0.00019 38.3 5.4 53 220-272 67-132 (375)
90 cd07995 TPK Thiamine pyrophosp 69.3 48 0.001 30.3 9.9 91 148-245 1-102 (208)
91 PRK00286 xseA exodeoxyribonucl 68.5 44 0.00095 34.0 10.3 117 140-291 131-256 (438)
92 cd08179 NADPH_BDH NADPH-depend 68.0 10 0.00022 37.8 5.5 53 220-272 68-136 (375)
93 cd08181 PPD-like 1,3-propanedi 67.9 11 0.00023 37.4 5.6 53 220-272 70-134 (357)
94 TIGR02810 agaZ_gatZ D-tagatose 67.9 1.3E+02 0.0029 31.2 13.4 139 146-313 12-168 (420)
95 cd08550 GlyDH-like Glycerol_de 67.8 9.9 0.00022 37.4 5.4 52 220-276 64-115 (349)
96 cd08199 EEVS 2-epi-5-epi-valio 67.7 6.8 0.00015 39.1 4.2 65 220-290 71-139 (354)
97 TIGR01357 aroB 3-dehydroquinat 67.5 12 0.00025 36.8 5.8 50 220-272 65-117 (344)
98 TIGR00237 xseA exodeoxyribonuc 67.3 52 0.0011 33.8 10.6 59 234-292 188-252 (432)
99 cd06281 PBP1_LacI_like_5 Ligan 67.1 91 0.002 28.2 11.2 90 146-273 1-90 (269)
100 TIGR02638 lactal_redase lactal 67.1 10 0.00022 37.9 5.4 56 220-275 73-143 (379)
101 PRK09423 gldA glycerol dehydro 66.4 13 0.00028 36.9 5.9 51 221-276 72-122 (366)
102 PRK10586 putative oxidoreducta 66.4 8.2 0.00018 38.6 4.5 58 220-283 74-131 (362)
103 cd08182 HEPD Hydroxyethylphosp 66.0 11 0.00024 37.4 5.3 54 220-273 64-134 (367)
104 TIGR01162 purE phosphoribosyla 65.5 24 0.00051 31.8 6.8 55 212-272 32-86 (156)
105 COG0206 FtsZ Cell division GTP 65.4 15 0.00031 37.0 6.0 122 142-271 9-137 (338)
106 PRK10014 DNA-binding transcrip 65.0 1E+02 0.0023 29.0 11.6 29 144-172 64-92 (342)
107 cd08193 HVD 5-hydroxyvalerate 64.9 12 0.00027 37.2 5.4 53 220-272 70-135 (376)
108 PRK15454 ethanol dehydrogenase 64.7 14 0.00031 37.3 5.9 53 220-272 93-158 (395)
109 cd08176 LPO Lactadehyde:propan 64.4 15 0.00033 36.6 5.9 56 220-275 72-140 (377)
110 TIGR00147 lipid kinase, YegS/R 64.2 19 0.00041 34.2 6.3 51 223-277 47-98 (293)
111 PRK15138 aldehyde reductase; P 64.1 13 0.00027 37.5 5.4 52 220-271 72-139 (387)
112 cd08185 Fe-ADH1 Iron-containin 63.6 12 0.00026 37.3 5.1 55 220-274 70-142 (380)
113 PLN02834 3-dehydroquinate synt 63.5 8.8 0.00019 39.5 4.2 50 220-272 147-199 (433)
114 cd08196 DHQS-like1 Dehydroquin 63.4 10 0.00022 37.8 4.5 66 220-291 60-128 (346)
115 cd08178 AAD_C C-terminal alcoh 63.3 19 0.00041 36.2 6.5 34 220-253 65-98 (398)
116 PF07905 PucR: Purine cataboli 62.0 27 0.00059 29.3 6.2 71 197-270 31-107 (123)
117 PRK10355 xylF D-xylose transpo 61.7 1.2E+02 0.0025 29.4 11.4 92 143-272 24-116 (330)
118 PRK09860 putative alcohol dehy 61.6 18 0.00039 36.3 5.9 54 220-273 75-141 (383)
119 COG0371 GldA Glycerol dehydrog 61.3 15 0.00032 37.3 5.2 57 219-280 70-126 (360)
120 cd08171 GlyDH-like2 Glycerol d 61.1 17 0.00037 35.8 5.6 50 220-274 65-114 (345)
121 PRK10624 L-1,2-propanediol oxi 61.0 16 0.00035 36.6 5.4 54 220-273 74-142 (382)
122 cd08197 DOIS 2-deoxy-scyllo-in 60.2 16 0.00034 36.6 5.2 63 220-288 68-133 (355)
123 cd01542 PBP1_TreR_like Ligand- 58.6 1.3E+02 0.0029 26.7 11.0 66 147-245 2-67 (259)
124 cd08184 Fe-ADH3 Iron-containin 58.4 24 0.00051 35.2 6.1 53 220-272 65-133 (347)
125 cd08198 DHQS-like2 Dehydroquin 57.6 17 0.00038 36.7 5.0 64 222-291 85-151 (369)
126 PRK05670 anthranilate synthase 57.3 19 0.0004 32.3 4.7 39 230-268 40-78 (189)
127 smart00046 DAGKc Diacylglycero 57.3 11 0.00023 31.7 3.0 42 233-277 49-93 (124)
128 PF03808 Glyco_tran_WecB: Glyc 57.3 52 0.0011 29.2 7.6 37 145-187 49-85 (172)
129 cd08183 Fe-ADH2 Iron-containin 56.9 19 0.0004 35.9 5.1 52 220-271 62-130 (374)
130 PF04263 TPK_catalytic: Thiami 56.8 54 0.0012 28.0 7.2 86 178-265 18-120 (123)
131 PRK03692 putative UDP-N-acetyl 56.5 42 0.0009 32.0 7.1 86 144-242 105-191 (243)
132 cd08192 Fe-ADH7 Iron-containin 56.5 27 0.00057 34.7 6.1 54 220-273 68-138 (370)
133 PF05036 SPOR: Sporulation rel 55.9 18 0.00039 26.6 3.7 50 213-262 9-71 (76)
134 cd08187 BDH Butanol dehydrogen 55.9 23 0.0005 35.3 5.6 56 220-275 73-141 (382)
135 PRK02261 methylaspartate mutas 55.7 72 0.0016 27.6 7.9 123 144-299 3-133 (137)
136 PRK13951 bifunctional shikimat 55.7 13 0.00028 38.9 3.8 65 221-291 222-289 (488)
137 TIGR00288 conserved hypothetic 55.7 24 0.00052 31.9 5.0 51 218-271 87-140 (160)
138 PF00532 Peripla_BP_1: Peripla 55.5 1.1E+02 0.0024 28.9 9.9 57 213-275 36-92 (279)
139 PF10126 Nit_Regul_Hom: Unchar 54.1 48 0.001 28.3 6.2 75 184-270 26-102 (110)
140 cd08174 G1PDH-like Glycerol-1- 54.0 33 0.00072 33.4 6.2 55 219-278 60-115 (331)
141 TIGR03405 Phn_Fe-ADH phosphona 53.4 27 0.00058 34.6 5.5 53 220-272 65-136 (355)
142 cd06349 PBP1_ABC_ligand_bindin 53.3 72 0.0016 30.2 8.3 106 156-269 115-223 (340)
143 PRK15052 D-tagatose-1,6-bispho 53.0 2.9E+02 0.0063 28.8 13.2 139 146-313 13-168 (421)
144 cd08191 HHD 6-hydroxyhexanoate 52.7 31 0.00067 34.6 5.9 51 221-271 67-130 (386)
145 cd08549 G1PDH_related Glycerol 52.6 26 0.00057 34.4 5.3 49 221-275 69-117 (332)
146 TIGR00566 trpG_papA glutamine 52.1 24 0.00051 31.8 4.5 42 227-268 37-78 (188)
147 cd08188 Fe-ADH4 Iron-containin 52.0 37 0.0008 33.9 6.3 52 221-272 73-137 (377)
148 TIGR03822 AblA_like_2 lysine-2 51.3 2.5E+02 0.0054 27.6 14.8 160 149-319 140-310 (321)
149 PRK05637 anthranilate synthase 51.2 35 0.00075 31.5 5.6 42 227-268 38-79 (208)
150 COG1454 EutG Alcohol dehydroge 51.1 33 0.00072 34.9 5.8 52 221-272 74-138 (377)
151 cd08175 G1PDH Glycerol-1-phosp 51.0 27 0.00059 34.3 5.1 46 221-272 69-114 (348)
152 cd03409 Chelatase_Class_II Cla 50.9 1.2E+02 0.0025 23.7 8.6 78 148-257 3-88 (101)
153 COG0504 PyrG CTP synthase (UTP 50.3 30 0.00065 36.7 5.4 71 234-320 344-420 (533)
154 PF00710 Asparaginase: Asparag 49.6 1.2E+02 0.0026 29.7 9.3 61 219-280 56-118 (313)
155 TIGR00215 lpxB lipid-A-disacch 49.3 37 0.00081 33.8 5.8 90 146-244 7-100 (385)
156 CHL00101 trpG anthranilate syn 49.2 25 0.00053 31.7 4.2 20 229-248 39-58 (190)
157 cd06315 PBP1_ABC_sugar_binding 49.0 1.6E+02 0.0034 27.1 9.6 65 146-244 2-67 (280)
158 cd08190 HOT Hydroxyacid-oxoaci 48.5 32 0.00069 34.9 5.3 52 220-271 67-137 (414)
159 PRK13111 trpA tryptophan synth 48.3 1.1E+02 0.0023 29.5 8.5 49 221-271 105-153 (258)
160 cd02071 MM_CoA_mut_B12_BD meth 47.9 1.2E+02 0.0026 25.2 7.9 43 203-245 44-91 (122)
161 PRK06203 aroB 3-dehydroquinate 47.8 38 0.00082 34.4 5.7 63 222-290 97-162 (389)
162 cd06305 PBP1_methylthioribose_ 47.8 2.1E+02 0.0045 25.7 13.9 82 223-314 45-127 (273)
163 TIGR00640 acid_CoA_mut_C methy 47.7 1.7E+02 0.0037 25.2 8.9 76 201-298 45-125 (132)
164 cd01391 Periplasmic_Binding_Pr 47.6 1.5E+02 0.0032 25.5 8.7 84 220-314 45-131 (269)
165 cd08169 DHQ-like Dehydroquinat 47.3 27 0.00058 34.7 4.4 49 221-272 68-119 (344)
166 smart00481 POLIIIAc DNA polyme 47.2 83 0.0018 23.1 6.1 51 220-272 15-65 (67)
167 COG2910 Putative NADH-flavin r 47.1 90 0.0019 29.4 7.4 94 145-248 1-111 (211)
168 PRK06774 para-aminobenzoate sy 47.0 23 0.00049 31.8 3.6 22 227-248 37-58 (191)
169 cd06292 PBP1_LacI_like_10 Liga 46.9 2.2E+02 0.0047 25.6 13.9 64 147-243 2-65 (273)
170 TIGR00696 wecB_tagA_cpsF bacte 46.9 79 0.0017 28.6 7.1 85 145-242 49-134 (177)
171 cd00537 MTHFR Methylenetetrahy 46.6 23 0.0005 33.6 3.7 88 178-269 30-137 (274)
172 PRK10703 DNA-binding transcrip 45.5 2.7E+02 0.0058 26.3 13.5 69 145-246 60-128 (341)
173 PRK10423 transcriptional repre 45.2 2.6E+02 0.0056 26.1 11.3 68 145-245 57-124 (327)
174 cd06299 PBP1_LacI_like_13 Liga 44.4 2.3E+02 0.005 25.2 10.9 83 146-267 1-83 (265)
175 PF13727 CoA_binding_3: CoA-bi 43.9 49 0.0011 27.9 5.1 45 221-265 129-173 (175)
176 KOG4180 Predicted kinase [Gene 43.8 17 0.00037 36.7 2.4 69 195-269 45-136 (395)
177 PF00289 CPSase_L_chain: Carba 43.5 33 0.00072 28.6 3.8 46 219-268 60-105 (110)
178 PF02645 DegV: Uncharacterised 43.2 96 0.0021 29.6 7.4 70 195-266 40-114 (280)
179 PLN02204 diacylglycerol kinase 42.9 35 0.00075 36.9 4.7 70 177-250 160-235 (601)
180 cd06298 PBP1_CcpA_like Ligand- 41.7 2.5E+02 0.0055 24.9 12.7 77 222-314 44-123 (268)
181 cd01744 GATase1_CPSase Small c 41.3 53 0.0011 29.1 5.0 17 230-246 36-52 (178)
182 PF04405 ScdA_N: Domain of Unk 41.0 29 0.00063 25.9 2.7 27 222-250 12-38 (56)
183 cd06342 PBP1_ABC_LIVBP_like Ty 40.9 2.5E+02 0.0055 26.1 9.8 104 157-269 116-223 (334)
184 PF13685 Fe-ADH_2: Iron-contai 40.5 21 0.00045 34.2 2.4 51 221-276 63-113 (250)
185 TIGR01501 MthylAspMutase methy 40.5 1.6E+02 0.0035 25.6 7.7 85 146-245 3-93 (134)
186 cd06301 PBP1_rhizopine_binding 40.5 2.7E+02 0.0059 24.9 10.6 44 222-269 45-88 (272)
187 cd06302 PBP1_LsrB_Quorum_Sensi 40.3 3.1E+02 0.0067 25.5 10.6 86 146-268 1-87 (298)
188 PF01936 NYN: NYN domain; Int 40.0 36 0.00077 28.2 3.5 44 226-272 88-131 (146)
189 PRK12767 carbamoyl phosphate s 40.0 2.8E+02 0.0062 26.3 10.1 37 221-258 57-93 (326)
190 cd06347 PBP1_ABC_ligand_bindin 40.0 1.9E+02 0.0041 26.9 8.8 61 205-268 160-223 (334)
191 PRK15395 methyl-galactoside AB 40.0 3.4E+02 0.0075 25.9 11.6 91 142-269 22-113 (330)
192 PRK05261 putative phosphoketol 39.9 4.8E+02 0.01 29.4 12.9 50 140-190 39-90 (785)
193 TIGR01861 ANFD nitrogenase iro 39.9 1E+02 0.0022 32.6 7.5 40 212-251 207-246 (513)
194 cd06167 LabA_like LabA_like pr 39.6 72 0.0016 26.8 5.4 43 224-269 90-132 (149)
195 PRK15404 leucine ABC transport 39.5 2.4E+02 0.0052 27.6 9.7 64 202-268 182-248 (369)
196 cd06268 PBP1_ABC_transporter_L 39.4 2.7E+02 0.0059 24.6 9.7 66 205-273 159-227 (298)
197 PLN02335 anthranilate synthase 39.4 45 0.00097 31.0 4.4 40 229-268 58-97 (222)
198 COG1609 PurR Transcriptional r 39.2 55 0.0012 32.0 5.2 63 145-241 59-122 (333)
199 cd06335 PBP1_ABC_ligand_bindin 39.1 2.5E+02 0.0053 26.9 9.6 61 204-267 161-224 (347)
200 TIGR00262 trpA tryptophan synt 38.8 53 0.0011 31.4 4.8 52 222-275 104-155 (256)
201 TIGR03100 hydr1_PEP hydrolase, 38.3 3.2E+02 0.0069 25.5 10.0 87 235-329 28-119 (274)
202 TIGR00676 fadh2 5,10-methylene 38.0 44 0.00096 31.9 4.2 56 215-270 66-135 (272)
203 PRK05660 HemN family oxidoredu 37.9 35 0.00076 34.1 3.7 65 232-296 57-136 (378)
204 PF13458 Peripla_BP_6: Peripla 37.3 2.7E+02 0.0058 26.0 9.3 111 156-274 115-229 (343)
205 TIGR02826 RNR_activ_nrdG3 anae 37.3 89 0.0019 27.4 5.7 44 221-265 47-93 (147)
206 PRK08007 para-aminobenzoate sy 37.0 44 0.00096 30.0 3.8 67 197-268 11-78 (187)
207 PRK14021 bifunctional shikimat 36.7 37 0.0008 35.9 3.7 48 222-272 255-305 (542)
208 cd06329 PBP1_SBP_like_3 Peripl 36.3 2.5E+02 0.0055 26.7 9.2 64 203-269 165-234 (342)
209 cd06326 PBP1_STKc_like Type I 35.9 3.4E+02 0.0074 25.3 9.8 106 156-271 117-226 (336)
210 cd01538 PBP1_ABC_xylose_bindin 35.8 3.5E+02 0.0077 24.9 13.8 43 222-268 44-86 (288)
211 PLN02948 phosphoribosylaminoim 35.7 69 0.0015 34.2 5.6 17 221-237 425-441 (577)
212 PF00731 AIRC: AIR carboxylase 35.7 34 0.00075 30.5 2.8 53 213-271 35-87 (150)
213 cd01967 Nitrogenase_MoFe_alpha 35.6 2.6E+02 0.0057 27.8 9.5 37 212-248 165-201 (406)
214 PRK13805 bifunctional acetalde 35.6 77 0.0017 35.4 6.2 33 221-253 527-559 (862)
215 PRK14987 gluconate operon tran 34.4 4E+02 0.0086 25.0 10.7 28 145-172 64-91 (331)
216 COG1922 WecG Teichoic acid bio 34.4 1.5E+02 0.0032 28.8 7.1 57 145-213 109-165 (253)
217 PF04122 CW_binding_2: Putativ 34.1 75 0.0016 24.9 4.3 39 208-248 49-87 (92)
218 PRK13210 putative L-xylulose 5 33.9 3.2E+02 0.0069 25.3 9.2 92 221-319 53-157 (284)
219 cd02991 UAS_ETEA UAS family, E 33.1 1.2E+02 0.0026 25.4 5.6 66 223-294 43-108 (116)
220 cd06334 PBP1_ABC_ligand_bindin 32.9 4.7E+02 0.01 25.4 11.2 103 157-268 117-227 (351)
221 PF13353 Fer4_12: 4Fe-4S singl 32.5 83 0.0018 25.9 4.6 41 221-261 40-84 (139)
222 PRK07649 para-aminobenzoate/an 32.1 52 0.0011 29.9 3.5 40 229-268 39-78 (195)
223 KOG1116 Sphingosine kinase, in 31.9 23 0.0005 38.0 1.3 106 221-331 224-334 (579)
224 PLN00197 beta-amylase; Provisi 31.9 3.2E+02 0.0068 29.6 9.5 101 222-322 129-279 (573)
225 TIGR01283 nifE nitrogenase mol 31.7 2.8E+02 0.0061 28.5 9.1 38 212-249 202-239 (456)
226 TIGR00677 fadh2_euk methylenet 31.5 72 0.0016 30.9 4.5 88 178-269 31-138 (281)
227 cd06337 PBP1_ABC_ligand_bindin 31.2 1.3E+02 0.0029 29.0 6.4 63 204-269 171-236 (357)
228 TIGR01378 thi_PPkinase thiamin 31.2 4.1E+02 0.0089 24.2 9.8 67 178-245 20-98 (203)
229 COG0685 MetF 5,10-methylenetet 31.1 75 0.0016 31.0 4.6 91 178-271 47-154 (291)
230 cd06354 PBP1_BmpA_PnrA_like Pe 30.7 4.2E+02 0.0091 24.2 10.2 63 146-242 1-66 (265)
231 PLN02591 tryptophan synthase 30.0 1.4E+02 0.003 28.6 6.2 48 221-271 94-142 (250)
232 TIGR01769 GGGP geranylgeranylg 29.9 1.6E+02 0.0034 27.5 6.4 59 220-280 11-71 (205)
233 PF02844 GARS_N: Phosphoribosy 29.9 62 0.0013 27.0 3.3 45 219-268 48-92 (100)
234 PF01261 AP_endonuc_2: Xylose 29.8 2.1E+02 0.0046 24.5 6.9 46 227-272 2-52 (213)
235 TIGR01284 alt_nitrog_alph nitr 29.8 1.6E+02 0.0034 30.5 6.9 100 147-248 129-240 (457)
236 PRK01045 ispH 4-hydroxy-3-meth 29.7 1.5E+02 0.0033 29.3 6.4 78 221-300 199-280 (298)
237 COG4981 Enoyl reductase domain 29.6 4.6E+02 0.0099 28.7 10.2 89 223-333 111-212 (717)
238 cd05015 SIS_PGI_1 Phosphogluco 29.5 1.5E+02 0.0033 25.8 5.9 39 221-259 6-45 (158)
239 PRK04155 chaperone protein Hch 29.3 5.5E+02 0.012 25.1 11.6 49 222-270 134-191 (287)
240 cd01977 Nitrogenase_VFe_alpha 29.1 6.1E+02 0.013 25.6 11.3 37 212-248 167-203 (415)
241 PRK12446 undecaprenyldiphospho 28.9 4E+02 0.0087 26.2 9.4 41 236-276 4-45 (352)
242 TIGR03652 FeS_repair_RIC iron- 28.6 42 0.00092 31.0 2.3 28 222-251 8-35 (216)
243 PRK12815 carB carbamoyl phosph 28.6 2.8E+02 0.0061 31.9 9.2 106 143-268 6-118 (1068)
244 TIGR01752 flav_long flavodoxin 28.5 1.4E+02 0.0031 26.0 5.6 62 143-206 77-159 (167)
245 cd06275 PBP1_PurR Ligand-bindi 28.4 4.3E+02 0.0093 23.5 11.0 25 221-245 43-67 (269)
246 PLN02803 beta-amylase 28.3 3.9E+02 0.0085 28.8 9.5 101 222-322 109-259 (548)
247 PF04392 ABC_sub_bind: ABC tra 28.3 1.6E+02 0.0034 27.9 6.3 75 146-249 1-75 (294)
248 cd06346 PBP1_ABC_ligand_bindin 28.2 1.9E+02 0.004 27.2 6.7 62 203-267 159-223 (312)
249 cd02067 B12-binding B12 bindin 28.2 3E+02 0.0065 22.3 7.2 23 222-244 67-90 (119)
250 TIGR00238 KamA family protein. 28.1 5.9E+02 0.013 25.1 11.3 157 148-317 162-331 (331)
251 cd01539 PBP1_GGBP Periplasmic 27.9 5E+02 0.011 24.2 10.0 43 222-268 46-88 (303)
252 TIGR03820 lys_2_3_AblA lysine- 27.8 7E+02 0.015 25.9 14.5 160 149-319 159-328 (417)
253 PF02401 LYTB: LytB protein; 27.5 1.6E+02 0.0035 28.8 6.2 77 221-299 198-278 (281)
254 PRK03359 putative electron tra 27.4 2.4E+02 0.0052 27.1 7.3 52 224-276 71-127 (256)
255 PF07355 GRDB: Glycine/sarcosi 27.3 79 0.0017 32.1 4.1 18 143-160 226-243 (349)
256 PTZ00063 histone deacetylase; 27.1 2.5E+02 0.0054 29.4 7.7 95 162-280 237-331 (436)
257 cd06291 PBP1_Qymf_like Ligand 27.0 4.5E+02 0.0098 23.4 10.1 27 146-172 1-27 (265)
258 cd01743 GATase1_Anthranilate_S 26.9 72 0.0016 28.2 3.4 17 232-248 41-57 (184)
259 KOG0333 U5 snRNP-like RNA heli 26.8 8.7E+02 0.019 26.6 12.1 162 141-310 448-616 (673)
260 cd06273 PBP1_GntR_like_1 This 26.8 3.4E+02 0.0074 24.2 7.9 41 222-268 44-84 (268)
261 TIGR01458 HAD-SF-IIA-hyp3 HAD- 26.7 1.4E+02 0.0031 28.0 5.6 57 200-260 28-85 (257)
262 PRK09330 cell division protein 26.7 2.6E+02 0.0056 28.7 7.7 48 221-270 87-138 (384)
263 PF11823 DUF3343: Protein of u 26.7 81 0.0018 24.0 3.2 33 243-275 8-40 (73)
264 cd01575 PBP1_GntR Ligand-bindi 26.2 4.6E+02 0.01 23.2 10.9 26 147-172 2-27 (268)
265 PF02633 Creatininase: Creatin 26.1 2.1E+02 0.0045 26.5 6.5 47 222-268 88-137 (237)
266 TIGR01860 VNFD nitrogenase van 26.1 2.3E+02 0.005 29.3 7.4 102 146-248 130-242 (461)
267 COG1564 THI80 Thiamine pyropho 26.1 3.8E+02 0.0082 25.3 8.1 75 175-251 23-108 (212)
268 PRK03369 murD UDP-N-acetylmura 25.9 3E+02 0.0065 28.5 8.2 59 219-283 362-428 (488)
269 PRK11303 DNA-binding transcrip 25.9 5.4E+02 0.012 23.9 11.0 28 145-172 62-89 (328)
270 PRK11780 isoprenoid biosynthes 25.7 82 0.0018 29.4 3.7 62 228-289 80-159 (217)
271 KOG1169 Diacylglycerol kinase 25.7 2.7E+02 0.0059 30.5 7.9 83 235-317 325-410 (634)
272 PLN02801 beta-amylase 25.7 4.9E+02 0.011 27.9 9.6 101 222-322 39-190 (517)
273 PRK06895 putative anthranilate 25.6 1.1E+02 0.0023 27.4 4.3 12 234-245 44-55 (190)
274 PLN02705 beta-amylase 25.6 4.9E+02 0.011 28.7 9.7 102 222-323 270-422 (681)
275 KOG2749 mRNA cleavage and poly 25.6 1.7E+02 0.0037 30.2 6.1 57 207-270 211-272 (415)
276 cd06282 PBP1_GntR_like_2 Ligan 25.4 4.7E+02 0.01 23.1 10.9 26 147-172 2-27 (266)
277 cd03411 Ferrochelatase_N Ferro 25.4 3.6E+02 0.0078 23.5 7.6 136 146-297 2-142 (159)
278 TIGR00253 RNA_bind_YhbY putati 25.3 3.6E+02 0.0077 22.2 7.0 32 230-261 12-44 (95)
279 PRK13609 diacylglycerol glucos 25.2 2.3E+02 0.0049 27.5 6.8 114 143-266 3-131 (380)
280 PF00186 DHFR_1: Dihydrofolate 25.1 40 0.00087 30.0 1.5 51 221-279 79-129 (161)
281 PRK13276 cell wall biosynthesi 25.1 69 0.0015 30.4 3.1 27 222-250 15-41 (224)
282 KOG1838 Alpha/beta hydrolase [ 24.9 5.3E+02 0.011 26.8 9.6 95 146-266 125-226 (409)
283 PRK11366 puuD gamma-glutamyl-g 24.9 2.4E+02 0.0053 26.7 6.8 44 198-243 28-71 (254)
284 COG0041 PurE Phosphoribosylcar 24.8 1.8E+02 0.0038 26.5 5.4 9 262-270 80-88 (162)
285 COG1168 MalY Bifunctional PLP- 24.8 3.9E+02 0.0084 27.6 8.4 165 148-333 85-283 (388)
286 PF01994 Trm56: tRNA ribose 2' 24.7 36 0.00077 29.5 1.0 83 197-301 11-94 (120)
287 PF01761 DHQ_synthase: 3-dehyd 24.6 30 0.00065 33.3 0.6 65 221-291 14-81 (260)
288 KOG2178 Predicted sugar kinase 24.2 31 0.00067 35.5 0.6 56 232-302 167-224 (409)
289 PRK09989 hypothetical protein; 24.1 4.8E+02 0.01 24.1 8.6 49 220-270 15-63 (258)
290 PLN02821 1-hydroxy-2-methyl-2- 24.0 1.9E+02 0.0042 30.4 6.3 51 222-273 351-401 (460)
291 PF05368 NmrA: NmrA-like famil 23.9 5.2E+02 0.011 23.0 9.6 74 198-278 33-109 (233)
292 COG0763 LpxB Lipid A disacchar 23.9 2.2E+02 0.0047 29.4 6.5 108 145-267 2-116 (381)
293 cd04724 Tryptophan_synthase_al 23.9 1.2E+02 0.0027 28.4 4.6 51 222-274 93-143 (242)
294 PF07722 Peptidase_C26: Peptid 23.9 2.7E+02 0.0059 25.6 6.8 48 193-243 21-68 (217)
295 PLN02735 carbamoyl-phosphate s 23.8 4E+02 0.0087 31.0 9.3 115 131-269 9-135 (1102)
296 COG0796 MurI Glutamate racemas 23.6 1.6E+02 0.0035 28.8 5.3 42 222-268 56-97 (269)
297 cd06339 PBP1_YraM_LppC_lipopro 23.4 2.2E+02 0.0047 27.4 6.3 100 161-269 110-237 (336)
298 PF04273 DUF442: Putative phos 23.4 3.7E+02 0.0081 22.4 6.9 86 223-326 17-105 (110)
299 PLN02905 beta-amylase 23.4 5.5E+02 0.012 28.5 9.6 102 222-323 288-440 (702)
300 cd06338 PBP1_ABC_ligand_bindin 23.4 2.7E+02 0.0058 26.2 6.8 63 205-270 165-230 (345)
301 PF07085 DRTGG: DRTGG domain; 23.3 1.1E+02 0.0024 24.6 3.6 45 221-270 49-93 (105)
302 cd04509 PBP1_ABC_transporter_G 23.0 5.3E+02 0.011 22.8 9.4 61 205-268 160-225 (299)
303 KOG4435 Predicted lipid kinase 23.0 1.3E+02 0.0028 31.5 4.7 49 222-273 106-154 (535)
304 cd01968 Nitrogenase_NifE_I Nit 22.9 7.8E+02 0.017 24.7 10.5 37 212-248 163-199 (410)
305 PF04208 MtrA: Tetrahydrometha 22.7 1.2E+02 0.0027 27.9 4.1 45 208-252 40-87 (176)
306 PRK12564 carbamoyl phosphate s 22.7 1.7E+02 0.0037 29.5 5.5 19 230-248 215-233 (360)
307 TIGR00539 hemN_rel putative ox 22.7 90 0.0019 30.9 3.5 63 234-296 52-129 (360)
308 PLN02540 methylenetetrahydrofo 22.6 1.1E+02 0.0023 33.0 4.3 90 177-270 29-138 (565)
309 PRK09249 coproporphyrinogen II 22.6 94 0.002 31.9 3.7 63 232-294 101-178 (453)
310 cd00209 DHFR Dihydrofolate red 22.5 1E+02 0.0022 26.9 3.4 48 221-276 79-126 (158)
311 PF00571 CBS: CBS domain CBS d 22.3 1.5E+02 0.0032 20.4 3.7 29 220-248 16-44 (57)
312 CHL00197 carA carbamoyl-phosph 22.2 1.5E+02 0.0031 30.4 4.9 22 230-251 230-251 (382)
313 PLN02161 beta-amylase 21.9 6.1E+02 0.013 27.3 9.4 102 221-322 118-269 (531)
314 TIGR00216 ispH_lytB (E)-4-hydr 21.8 3.3E+02 0.0071 26.7 7.1 52 220-273 196-247 (280)
315 PF00117 GATase: Glutamine ami 21.8 1.2E+02 0.0025 26.7 3.8 48 230-292 39-89 (192)
316 cd06312 PBP1_ABC_sugar_binding 21.7 5.9E+02 0.013 22.9 10.2 86 146-268 1-88 (271)
317 cd06310 PBP1_ABC_sugar_binding 21.7 2.9E+02 0.0062 24.8 6.4 23 222-244 46-68 (273)
318 cd06295 PBP1_CelR Ligand bindi 21.6 4.6E+02 0.01 23.5 7.8 43 222-270 53-95 (275)
319 cd06304 PBP1_BmpA_like Peripla 21.5 6.1E+02 0.013 22.9 9.2 22 222-243 45-66 (260)
320 TIGR03365 Bsubt_queE 7-cyano-7 21.4 2.5E+02 0.0054 26.3 6.0 42 222-263 58-103 (238)
321 cd00758 MoCF_BD MoCF_BD: molyb 21.4 2.3E+02 0.0049 23.9 5.3 53 192-244 14-69 (133)
322 PRK07765 para-aminobenzoate sy 21.4 1.1E+02 0.0024 28.2 3.6 14 233-246 46-59 (214)
323 PF02350 Epimerase_2: UDP-N-ac 21.3 2.3E+02 0.005 28.0 6.1 45 221-270 55-99 (346)
324 PF07287 DUF1446: Protein of u 21.3 2.4E+02 0.0051 28.7 6.2 58 213-270 50-108 (362)
325 COG4075 Uncharacterized conser 21.3 3.1E+02 0.0066 23.3 5.8 74 184-269 26-101 (110)
326 TIGR02491 NrdG anaerobic ribon 21.1 2E+02 0.0044 24.9 5.1 39 221-259 50-93 (154)
327 PRK12360 4-hydroxy-3-methylbut 21.0 2.7E+02 0.0059 27.3 6.3 52 221-274 198-249 (281)
328 COG0533 QRI7 Metal-dependent p 21.0 1.7E+02 0.0036 29.7 5.0 41 222-262 250-291 (342)
329 PRK09432 metF 5,10-methylenete 21.0 1.4E+02 0.0031 29.1 4.5 55 215-269 90-153 (296)
330 cd06297 PBP1_LacI_like_12 Liga 20.9 6.2E+02 0.014 22.8 11.0 26 147-172 2-27 (269)
331 cd06313 PBP1_ABC_sugar_binding 20.8 6.4E+02 0.014 22.9 12.4 43 222-268 44-86 (272)
332 PF13380 CoA_binding_2: CoA bi 20.7 2.3E+02 0.0051 23.5 5.1 42 220-267 66-107 (116)
333 CHL00200 trpA tryptophan synth 20.6 1.6E+02 0.0035 28.4 4.7 54 221-276 107-160 (263)
334 TIGR00732 dprA DNA protecting 20.6 7E+02 0.015 23.2 10.8 105 150-274 77-193 (220)
335 PF00582 Usp: Universal stress 20.5 3.9E+02 0.0085 20.5 6.3 44 220-269 89-140 (140)
336 TIGR00538 hemN oxygen-independ 20.5 1.5E+02 0.0033 30.4 4.7 65 232-296 101-180 (455)
337 PRK10769 folA dihydrofolate re 20.4 1E+02 0.0022 27.4 3.1 49 221-278 77-125 (159)
338 PRK02399 hypothetical protein; 20.4 1.2E+02 0.0025 31.5 3.8 88 176-272 30-126 (406)
339 PRK08857 para-aminobenzoate sy 20.4 1.6E+02 0.0035 26.4 4.4 20 229-248 39-58 (193)
340 PRK14462 ribosomal RNA large s 20.3 8E+02 0.017 24.8 9.7 162 148-325 163-349 (356)
341 cd06278 PBP1_LacI_like_2 Ligan 20.2 3.2E+02 0.007 24.2 6.3 25 221-245 42-66 (266)
342 TIGR01133 murG undecaprenyldip 20.1 1.4E+02 0.003 28.1 4.1 35 236-270 3-38 (348)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=7.9e-81 Score=628.83 Aligned_cols=279 Identities=80% Similarity=1.310 Sum_probs=269.5
Q ss_pred cCCCcceeccccccccccCCCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccCCCccc
Q 019697 49 SRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH 128 (337)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~~r~~~ 128 (337)
.++.|+++|+ .||++|+||||.+++|+.|++++||..|++++.....||++++.|+..+..++...++.+
T Consensus 2 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~ 71 (484)
T PLN02564 2 SSKPKIVTGD----------AGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTH 71 (484)
T ss_pred CCcCccccCC----------CceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCcc
Confidence 4678899988 999999999999999999999999999999999999999999999998766666677899
Q ss_pred ccccCcccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhcc
Q 019697 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208 (337)
Q Consensus 129 F~~agpr~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~ 208 (337)
|++||||+++||+|+++|||||||||+|||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++
T Consensus 72 ~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~ 151 (484)
T PLN02564 72 FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR 151 (484)
T ss_pred ceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhC
Confidence 99999999999999999999999999999999999999999987888889999999999999999999999999999999
Q ss_pred CCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhH
Q 019697 209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (337)
Q Consensus 209 GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTA 288 (337)
|||+|||||+++++++++++|++++||+||+||||||+++|.+|++++++++++|+||||||||||||++||+|||||||
T Consensus 152 GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTA 231 (484)
T PLN02564 152 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 231 (484)
T ss_pred CCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 289 v~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++++++|++++++|.|+++||||||+|||+|||||++++||++.+|+|
T Consensus 232 v~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~i 280 (484)
T PLN02564 232 VEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCC 280 (484)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEE
Confidence 9999999999999999998899999999999999999999999999987
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=7e-73 Score=567.78 Aligned_cols=251 Identities=53% Similarity=0.851 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCcccccccccccccChHHHHHHHhhcc------CCCcccccccCcccccccCCCCeeEEEEccCCCCchh
Q 019697 86 LPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGI 159 (337)
Q Consensus 86 ~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~------~~r~~~F~~agpr~~~~f~~~~~~iaIvt~GG~apGm 159 (337)
-+++++||..+..++... +||++++.|+..+..++. ..+...|++||||+++||+|+++||||||||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 467889999988888877 899999999887654432 1345789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEEccccccccC---CCeeeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCE
Q 019697 160 NTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQ 236 (337)
Q Consensus 160 NavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~ 236 (337)
|++||++|+.+.++|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||+.+++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999888888999999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 019697 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLM 316 (337)
Q Consensus 237 LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvM 316 (337)
||+|||||||++|.+|+|++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCccHHHHHHHHccCCCCCC
Q 019697 317 GRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 317 GR~sG~LA~~aaLAs~~~d~c 337 (337)
||+|||||+++|||++++|+|
T Consensus 256 GR~sG~lA~~aaLA~~~ad~i 276 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFV 276 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEE
Confidence 999999999999999999987
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=1e-72 Score=568.97 Aligned_cols=265 Identities=52% Similarity=0.822 Sum_probs=239.3
Q ss_pred cccccchhhcCCC--CCCCCCCCCCCccccccc--------ccccccChHHHHHHHhhcc--CCCcccccccCccccccc
Q 019697 73 LEDVPHLTNFLPD--LPSYPNPLKKSQAYAVVK--------QTFVSPEDAVAQNIVIQKD--SPRGVHFRRAGPREKVYF 140 (337)
Q Consensus 73 ~eaV~~l~~~~p~--~p~~~~pL~~n~~~r~~~--------~~~V~~t~~V~~~~~~~~~--~~r~~~F~~agpr~~~~f 140 (337)
+|.|.+|.-..|+ +|...+|.-+...++.|+ ..||++++.|+..+..++. ..+...|++||||+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f 83 (459)
T PTZ00286 4 IERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGNGFLPREAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYF 83 (459)
T ss_pred eecccccccCCccccCCCcccccCCcCCCCCCccccccCCccceecCCCeEEeecccCccccccccchheecCCceeEEE
Confidence 4555555544442 444455544444444444 4899999999988755542 235689999999999999
Q ss_pred CCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC
Q 019697 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 141 ~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+++
T Consensus 84 ~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~ 163 (459)
T PTZ00286 84 NPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGF 163 (459)
T ss_pred cccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChh
Confidence 99999999999999999999999999999987788899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~ 300 (337)
++++|+++|++++||+||+||||||+++|.+|+|++++++++|+||||||||||||++||+|||||||+++++++|++++
T Consensus 164 ~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~ 243 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAY 243 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 301 ~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+||.|+++||||||+|||+|||||+++|||++++|+|
T Consensus 244 ~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~v 280 (459)
T PTZ00286 244 VEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVC 280 (459)
T ss_pred HHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEE
Confidence 9999998899999999999999999999999999987
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.1e-66 Score=519.42 Aligned_cols=210 Identities=59% Similarity=0.999 Sum_probs=200.8
Q ss_pred ccccccCcccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCC--eeeCChhhHhc
Q 019697 127 VHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN--TLTLSPKVVND 204 (337)
Q Consensus 127 ~~F~~agpr~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~--~~~L~~~~V~~ 204 (337)
..|.|||||+++||+|+++|||||||||+|||||+|||++|+.+. .|+..+|||+++||+||++++ .++|+|+.|++
T Consensus 36 ~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~-~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~ 114 (411)
T PLN02884 36 QWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQN 114 (411)
T ss_pred hhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHH
Confidence 568999999999999999999999999999999999999999875 366668999999999999998 66789999999
Q ss_pred hhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccC
Q 019697 205 IHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (337)
Q Consensus 205 ~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~G 284 (337)
|+++|||+|||+|++.++++++++|++++||+||+||||||+++|.+|++++++++++++||||||||||||++||+|||
T Consensus 115 i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiG 194 (411)
T PLN02884 115 IHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFG 194 (411)
T ss_pred HHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 285 fdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
||||+|+++++|++++.+|.|+.+||||||+|||+|||||+++|||++.+|+|
T Consensus 195 FdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~i 247 (411)
T PLN02884 195 FDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDIC 247 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999998866789999999999999999999999988876
No 5
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=5.3e-66 Score=544.42 Aligned_cols=263 Identities=24% Similarity=0.281 Sum_probs=242.2
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC--------cc-
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr- 135 (337)
-++++||.+|++.+|++|.+++.+++|+++++|++++|+.|+.|+++| .+++| +|+.+|.+++ +.
T Consensus 303 ~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~-~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 381 (762)
T cd00764 303 LMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAM-DEKRFDEAAALRGKSFDKNWNLYKLLAIELP 381 (762)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhh-hhhhHHHHHHhcchhHHHHHHHHHhccccCC
Confidence 477999999999999999999999999999999999999999999998 57776 7999999876 21
Q ss_pred cccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceec
Q 019697 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRT 215 (337)
Q Consensus 136 ~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGT 215 (337)
.+.+ +.+++||||+|+||||||||++||++++++.. .+++||||++||+||+++++++|+|++|++|+++|||+|||
T Consensus 382 ~~~~-~~~~~~IaIltsGG~apGmNaairavv~~a~~--~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT 458 (762)
T cd00764 382 QPLP-EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA--HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGT 458 (762)
T ss_pred ccCC-cccccEEEEEecCCCchhHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccc
Confidence 1221 23458999999999999999999999998863 46899999999999999999999999999999999999999
Q ss_pred cCCC--CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHHHHH
Q 019697 216 SRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (337)
Q Consensus 216 sR~~--~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~ 292 (337)
+|+. +++++++++|++++||+|++||||||+++|.+|++++.+| ++.|+|||||||||||||+||+|||||||+|++
T Consensus 459 ~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~ 538 (762)
T cd00764 459 KRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNAL 538 (762)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHH
Confidence 9984 5899999999999999999999999999999999998777 588999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 293 QRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 293 ~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|++++++|.|+++||||||+|||+|||||++++||+| +|+|
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~G-Ad~i 582 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVG-ADAA 582 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcC-CCEE
Confidence 9999999999999988999999999999999999999997 4543
No 6
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5.4e-63 Score=522.36 Aligned_cols=264 Identities=24% Similarity=0.284 Sum_probs=241.9
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC----------c
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG----------P 134 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag----------p 134 (337)
-++.+||.+|++.+++++.+++.+++|++.+.|++++++.++.|..++ .+++| +|+++|.++. +
T Consensus 300 ~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~-~~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 300 RQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAI-KEKRFAEAMRLRGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHH-HhccHHHHHHhcCHHHHHHHHHHHhhhccCC
Confidence 477899999999999999999999999999999999999999999997 57776 7999998865 2
Q ss_pred cccccc-CCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcce
Q 019697 135 REKVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL 213 (337)
Q Consensus 135 r~~~~f-~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~L 213 (337)
+..... ..+++||||+||||||||||++||++++++.+ .+.+||||++||+||+++++.+|+|..|++|+++|||+|
T Consensus 379 ~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L 456 (745)
T TIGR02478 379 DKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL 456 (745)
T ss_pred ccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc
Confidence 332222 34558999999999999999999999998864 467999999999999999999999999999999999999
Q ss_pred eccCCC--CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHHH
Q 019697 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (337)
Q Consensus 214 GTsR~~--~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~ 290 (337)
||+|+. +++++++++|++++||+|++||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||++
T Consensus 457 gtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~ 536 (745)
T TIGR02478 457 GTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN 536 (745)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH
Confidence 999984 5799999999999999999999999999999999997666 5789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 291 ~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++++||+++++|.|+++||||||+|||+|||||+++|||++ +|+|
T Consensus 537 ~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~g-ad~i 582 (745)
T TIGR02478 537 EITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATG-ADAA 582 (745)
T ss_pred HHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcC-CCEE
Confidence 999999999999999988999999999999999999999996 5654
No 7
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=2e-58 Score=450.40 Aligned_cols=189 Identities=34% Similarity=0.492 Sum_probs=180.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~---- 220 (337)
+||||+|+||||||||++||++++++.+ + +.+||||++||+||+++++++|+|+.++.|+++|||+|||+|++.
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999875 3 479999999999999999999999999999999999999999853
Q ss_pred -chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 221 -d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
++++++++|++++||+|++||||||+++|.+|+|++++++..++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+.+|.|+ +||||||+|||+|||||+++|||++ +|+|
T Consensus 159 ~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~~-ad~i 194 (338)
T cd00363 159 RDTASSH-QRTFVVEVMGRHCGDIALEAGLATG-ADII 194 (338)
T ss_pred HHhcccC-CCEEEEEECCcCHHHHHHHHHHHhC-CCEE
Confidence 9999995 6899999999999999999999986 7765
No 8
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=5.5e-58 Score=441.29 Aligned_cols=183 Identities=36% Similarity=0.574 Sum_probs=172.1
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-----C
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----H 220 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~-----~ 220 (337)
||||+|+||||||||++||++++++.+ + +.+|||+++||+||+++++++|+|+.+++|+++|||+|||+|++ +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999998864 3 46999999999999999999999999999999999999999984 2
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~ 300 (337)
++++++++|++++||+|++||||||+++|++|+|+ +.++|||||||||||+++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999986 3688999999999999999999999999999999999999
Q ss_pred HhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 301 ~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++|.|+ +||||||+|||+|||||+++|||++ +|+|
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~g-ad~i 188 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIATG-AEII 188 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHcC-CCEE
Confidence 999997 5799999999999999999999996 5664
No 9
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.2e-57 Score=471.51 Aligned_cols=212 Identities=25% Similarity=0.404 Sum_probs=198.4
Q ss_pred Ccccccc---cCcccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhh
Q 019697 125 RGVHFRR---AGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201 (337)
Q Consensus 125 r~~~F~~---agpr~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~ 201 (337)
+-..|.. ++|+.+.++.+..+|||||+|||+|||||+||+++++++...+++.+||||++||+||+++++++|+++.
T Consensus 57 p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~ 136 (610)
T PLN03028 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDV 136 (610)
T ss_pred cceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHH
Confidence 4566775 4588888888888999999999999999999999999998877789999999999999999999999999
Q ss_pred HhchhccCCc-ceeccCCC----CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 202 VNDIHKRGGT-ILRTSRGG----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 202 V~~~~~~GGS-~LGTsR~~----~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
|+.|+++||+ +|||+|.+ +++++++++|++++||+||+||||||+++|.+|+|++++++.+|+|||||||||||+
T Consensus 137 v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 137 LSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred HHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCC
Confidence 9999999998 89999974 358999999999999999999999999999999999999988999999999999999
Q ss_pred c--ccCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 277 A--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 277 ~--gtD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+ +||+|||||||+++++++|++++.||.|+++||||||+|||+|||||++||||+| +|+|
T Consensus 217 ~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~-pnii 278 (610)
T PLN03028 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQSH-PNMV 278 (610)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcC-CCEE
Confidence 8 8999999999999999999999999999988999999999999999999999996 4654
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.2e-57 Score=441.59 Aligned_cols=183 Identities=33% Similarity=0.524 Sum_probs=171.8
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~----- 219 (337)
.||||+||||||||||++||++++.+.+ .+.+|||+++||+||+++++++|+|+.++.|+++|||+|||+|+.
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 3899999999999999999999998864 357999999999999999999999999999999999999999984
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
+++++++++|++++||+|++||||||+++|++|+|+ .++|||||||||||+++||+|||||||+++++++++++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 247899999999999999999999999999999885 47899999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|.|+ +||||||+|||+|||||+++|||++ +|+|
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~g-a~~i 188 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAGG-AEFI 188 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHcC-CCEE
Confidence 9999987 6899999999999999999999996 6764
No 11
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-57 Score=444.33 Aligned_cols=185 Identities=37% Similarity=0.559 Sum_probs=172.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC---
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH--- 220 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~--- 220 (337)
.+||||+||||+|||||+|||++|+++... +.+||||++||+||+++++++|+|+.|++|+++|||+|||+|.++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 469999999999999999999999999753 789999999999999999999999999999999999999999852
Q ss_pred --chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHH
Q 019697 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (337)
Q Consensus 221 --d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~ 298 (337)
..++++++|++++||+|++||||||+++|..|+|+. +++|||||||||||+++||+|||||||++++++++++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999974 4889999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 299 i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++.+++|+ +|++|||+|||+|||||++||||++ +|+|
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~~-a~~i 191 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLATG-ADII 191 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhcC-CCEE
Confidence 99766665 7899999999999999999999998 5553
No 12
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=4.5e-57 Score=462.90 Aligned_cols=248 Identities=26% Similarity=0.438 Sum_probs=206.6
Q ss_pred hhcCCCCCCCCCCCCCCc-ccccccccccccChHHHHHHHhhccCC-----CcccccccCcccccccCCCCeeEEEEccC
Q 019697 80 TNFLPDLPSYPNPLKKSQ-AYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (337)
Q Consensus 80 ~~~~p~~p~~~~pL~~n~-~~r~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~agpr~~~~f~~~~~~iaIvt~G 153 (337)
+.|.|.+|.. |++-. .++... ...+..+...-...+.|+ +-..|...-...+ .+..+||||++||
T Consensus 6 ~~~~p~lp~~---l~~~~~~~~~~~---~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~---~~~~~rIgIl~sG 76 (539)
T TIGR02477 6 LQYVPKLPKV---LQGDTANISLED---GEPTAAVADQEELKELFPNTYGLPIITFEPGEASPD---EHQPLKIGVILSG 76 (539)
T ss_pred hhCCCCCChH---HcCCCcceEEec---cCcccCCCCHHHHHHhChHhhCCccEEEecCCCCcc---cccceEEEEECCC
Confidence 5789999988 43311 122221 222222222211234442 4456665322111 2455899999999
Q ss_pred CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCc-ceeccCCCC----chHHHHHH
Q 019697 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGGH----DTNKIVDN 228 (337)
Q Consensus 154 G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS-~LGTsR~~~----d~~~iv~~ 228 (337)
|||||||++|+++++++...+++.+||||++||+||+++++++|+|+.|+.|+++||+ +|||+|++. ++++++++
T Consensus 77 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~ 156 (539)
T TIGR02477 77 GQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTT 156 (539)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999987778899999999999999999999999999999999996 999999853 68999999
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc--ccCcccCchhHHHHHHHHHHHHHHhhhcC
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~--gtD~S~GfdTAv~~~~~~i~~i~~~A~S~ 306 (337)
|++++||+|++||||||+++|..|+|++.+++++|+|||||||||||++ +||+|||||||+++++++|+++..++.|+
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~ 236 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSA 236 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998 59999999999999999999999999999
Q ss_pred CCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 307 ENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 307 ~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++||||||+|||+|||||++||||+ .+|+|
T Consensus 237 ~~~~~~VevMGR~aG~LAl~~aLat-~~~ii 266 (539)
T TIGR02477 237 KKYWHFIRLMGRSASHIALECALQT-HPNVC 266 (539)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHhc-CCCEE
Confidence 8999999999999999999999998 56665
No 13
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=6.1e-57 Score=430.38 Aligned_cols=184 Identities=41% Similarity=0.586 Sum_probs=169.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~----- 219 (337)
+||||+|+||||||||++|+++++++.+ .+.+|||+++||+||+++++++|+|+.++.|.++|||+|||+|..
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 4899999999999999999999998864 467999999999999999999999999999999999999999984
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
++.++++++|++++||+|++||||||+++|++|++++. ++|||||||||||+|+||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 23578999999999999999999999999999998753 8899999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|.|+ +||||||+|||+|||||+++|||++ +|+|
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~~-a~~i 189 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALATG-ADLI 189 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHHT-SSEE
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhccC-CCEE
Confidence 9999987 6899999999999999999999996 5654
No 14
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=1.6e-56 Score=444.52 Aligned_cols=187 Identities=26% Similarity=0.431 Sum_probs=173.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChh--h-HhchhccCCcceeccCCCC-
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK--V-VNDIHKRGGTILRTSRGGH- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~--~-V~~~~~~GGS~LGTsR~~~- 220 (337)
+||||+||||||||||++||++++.+...+++.+|||+++||+||+++++++|++. . ++.|+++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999987655567899999999999999999999985 3 3559999999999999743
Q ss_pred ----------------chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccC
Q 019697 221 ----------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (337)
Q Consensus 221 ----------------d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~G 284 (337)
++++++++|++++||+|++||||||+++|.+|+++++++++.|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 3689999999999999999999999999999999999988899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHcc
Q 019697 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 331 (337)
Q Consensus 285 fdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs 331 (337)
||||+++++++|++++.+|.|+++.++|||+|||+|||||+++|||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~ 210 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAY 210 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhh
Confidence 99999999999999999999998666666999999999999999995
No 15
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=2.2e-56 Score=457.98 Aligned_cols=248 Identities=25% Similarity=0.381 Sum_probs=209.0
Q ss_pred hhcCCCCCCCCCCCCCC-cccccccccccccChHHHHHHHhhccC-----CCcccccccCcccccccCCCCeeEEEEccC
Q 019697 80 TNFLPDLPSYPNPLKKS-QAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (337)
Q Consensus 80 ~~~~p~~p~~~~pL~~n-~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~agpr~~~~f~~~~~~iaIvt~G 153 (337)
..|.|.+|.+ |++. +.++ ....+.|..+...-...+.| .+-.+|.+.-...+ .+..+||||++||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~IgIl~SG 81 (550)
T cd00765 11 INYTPKLPSV---LKGDFNNIK---IVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAPS---SAPKLKIGIVLSG 81 (550)
T ss_pred HhcCCCCChh---hcCCccceE---EeecCcccccCCHHHHHHhChhhhCCcceEEeecCCccc---CCCCCEEEEECCC
Confidence 5689999988 5431 1121 22233333333221223444 35567776432111 2456899999999
Q ss_pred CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCc-ceeccCCC----CchHHHHHH
Q 019697 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (337)
Q Consensus 154 G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS-~LGTsR~~----~d~~~iv~~ 228 (337)
|||||||++|+++++++...+++.+||||++||+||+++++++|+|+.++.|+++||+ +|||+|++ +++++++++
T Consensus 82 G~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~ 161 (550)
T cd00765 82 GQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEET 161 (550)
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHH
Confidence 9999999999999999887777899999999999999999999999999999999999 99999985 368999999
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc--CcccCchhHHHHHHHHHHHHHHhhhcC
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESV 306 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt--D~S~GfdTAv~~~~~~i~~i~~~A~S~ 306 (337)
|++++||+|++||||||+++|.+|+|++++++++|+|||||||||||++++ |+|||||||+++++++|++++.|+.++
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~ 241 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARST 241 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999984 999999999999999999999999999
Q ss_pred CCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 307 ENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 307 ~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++||+|||+|||+|||||++||||+ .+|+|
T Consensus 242 ~~~~~~VEvMGR~aG~LAl~~aLat-~p~li 271 (550)
T cd00765 242 GKYWHFVKLMGRSASHIALECALKT-HPNIC 271 (550)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHhc-CCCEE
Confidence 9999999999999999999999998 55654
No 16
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.8e-56 Score=459.43 Aligned_cols=247 Identities=24% Similarity=0.420 Sum_probs=206.6
Q ss_pred hhhcCCCCCCCCCCCCCC-cccccccccccccChHHHHHHHhhccC-----CCcccccccCcccccccCCCCeeEEEEcc
Q 019697 79 LTNFLPDLPSYPNPLKKS-QAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAGPREKVYFKSDEVRACIVTC 152 (337)
Q Consensus 79 l~~~~p~~p~~~~pL~~n-~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~agpr~~~~f~~~~~~iaIvt~ 152 (337)
-..|.|.+|.. |++. ..++. .....|+.+...-...+.| .+...|.+..+.. ...+||||++|
T Consensus 10 r~~~~p~lp~~---l~~~~~~~~~---~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~-----~~~~~IgIl~s 78 (555)
T PRK07085 10 RLKYRPKLPKL---LQNDPGLIKI---VDGEFTESVADQDELAELFPNTYGLPYVTFVKGSESS-----SKPLKVGVILS 78 (555)
T ss_pred HHhCCCCCCHH---HhCCCCCceE---eecCCccccCCHHHHHHhChHhhCCccEEEEeCCCCc-----ccceEEEEECC
Confidence 36788999987 3321 11111 1222233332221123334 3456677643211 23579999999
Q ss_pred CCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCc-ceeccCCC----CchHHHHH
Q 019697 153 GGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVD 227 (337)
Q Consensus 153 GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS-~LGTsR~~----~d~~~iv~ 227 (337)
||||||||+||+++++++...+++.+||||++||+||+++++++|+|+.|+.|+++||+ +|||+|++ ++++++++
T Consensus 79 GG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~ 158 (555)
T PRK07085 79 GGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLE 158 (555)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHH
Confidence 99999999999999998877778899999999999999999999999999999999998 99999985 35899999
Q ss_pred HHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc--ccCcccCchhHHHHHHHHHHHHHHhhhc
Q 019697 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVES 305 (337)
Q Consensus 228 ~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~--gtD~S~GfdTAv~~~~~~i~~i~~~A~S 305 (337)
+|++++||+|++||||||+++|..|+|++++++++|+|||||||||||++ ++|+|||||||+++++++|++++.+|.|
T Consensus 159 ~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s 238 (555)
T PRK07085 159 TVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALS 238 (555)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 5599999999999999999999999999
Q ss_pred CCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 306 VENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 306 ~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++||||||+|||+|||||++||||+ .+|+|
T Consensus 239 ~~~~~~~VevMGR~aG~LAl~~aLat-~~~ii 269 (555)
T PRK07085 239 AKKYWHFIKLMGRSASHIALECALQT-HPNIC 269 (555)
T ss_pred cCCcEEEEEECCCChHHHHHHHHHhc-CCCEE
Confidence 98899999999999999999999997 56654
No 17
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.7e-56 Score=434.16 Aligned_cols=183 Identities=37% Similarity=0.542 Sum_probs=172.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~---- 220 (337)
+||||+|+||||||||++|+++++++... +.+|||+++||+||+++++++|+|+.+++|.++|||+|||+|+..
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~~--g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAISE--GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHHC--CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 48999999999999999999999988653 579999999999999999999999999999999999999999742
Q ss_pred -chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 221 -d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
++++++++|++++||+|++||||||+++|++|+|+ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999973 68899999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|.|+ +||||||+|||+|||||+++|||++ +|+|
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~~-a~~i 189 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAGG-AEVI 189 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhcC-CCEE
Confidence 9999997 5899999999999999999999995 6654
No 18
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.5e-56 Score=446.06 Aligned_cols=187 Identities=23% Similarity=0.353 Sum_probs=172.4
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhc---hhccCCcceeccCCCC-
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND---IHKRGGTILRTSRGGH- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~---~~~~GGS~LGTsR~~~- 220 (337)
.||||+||||||||||++||++++.+.+..+..+|||+++||+||+++++++|+...++. |.++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~~ 83 (416)
T PRK14072 4 GNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKLK 83 (416)
T ss_pred ceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCCc
Confidence 699999999999999999999999887644448999999999999999999999877777 8999999999999853
Q ss_pred -------chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHH
Q 019697 221 -------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (337)
Q Consensus 221 -------d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~ 293 (337)
++++++++|++++||+|++||||||+++|++|+|++++++.+++||||||||||||++||+|||||||+++++
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i~ 163 (416)
T PRK14072 84 SLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYIA 163 (416)
T ss_pred ccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHHH
Confidence 4799999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC--eEEEEEecCCCccHHHHHHHHcc
Q 019697 294 RAINAAHVEVESVEN--GVGIVKLMGRYSGFISMYATLAS 331 (337)
Q Consensus 294 ~~i~~i~~~A~S~~~--rV~iVEvMGR~sG~LA~~aaLAs 331 (337)
++|+++..|+.++.+ ||||||+|||+|||||+++|||+
T Consensus 164 ~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~ 203 (416)
T PRK14072 164 TSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAK 203 (416)
T ss_pred HHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhcc
Confidence 999999655544322 89999999999999999999995
No 19
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1.3e-55 Score=453.23 Aligned_cols=246 Identities=24% Similarity=0.345 Sum_probs=206.4
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC-cccccccCCCCeeEEEEccC
Q 019697 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG-PREKVYFKSDEVRACIVTCG 153 (337)
Q Consensus 80 ~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag-pr~~~~f~~~~~~iaIvt~G 153 (337)
+.|.|.+|.. |++ .+.. ...+.+..+...-...+.| .+...|.+.. +..+ .+..+|||||+||
T Consensus 37 ~~~~p~lp~~---l~~--~~~~---~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~---~~~~~~IGIv~sG 105 (568)
T PLN02251 37 IDHALPLPSV---LKG--PFKI---VDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADALS---SDQKLKIGVVLSG 105 (568)
T ss_pred HhCCCCCChh---hcC--ceEE---EecCcccccCCHHHHHHhChHhhCCceEEEeeccCcccc---ccccceEEEECcC
Confidence 6789999988 443 1221 1222233322211123334 3456676632 1111 1345799999999
Q ss_pred CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCc-ceeccCCC----CchHHHHHH
Q 019697 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (337)
Q Consensus 154 G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS-~LGTsR~~----~d~~~iv~~ 228 (337)
|+|||||+||+++++++.+..++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 106 G~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~ 185 (568)
T PLN02251 106 GQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEET 185 (568)
T ss_pred CCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHH
Confidence 9999999999999999987777899999999999999999999999999999999998 99999984 468999999
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC--cccCchhHHHHHHHHHHHHHHhhhcC
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHVEVESV 306 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD--~S~GfdTAv~~~~~~i~~i~~~A~S~ 306 (337)
|++++||+|++||||||+++|..|+|++++++.+|+|||||||||||++++| +|||||||+++++++|++++.||.|+
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~ 265 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARST 265 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998 69999999999999999999999999
Q ss_pred CCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 307 ENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 307 ~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|+|||+|||+|||||++||||+ .+|+|
T Consensus 266 ~k~~~~VevMGR~aG~LAL~~aLat-~pnii 295 (568)
T PLN02251 266 GKYYHFVRLMGRAASHITLECALQT-HPNIT 295 (568)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHhh-CCCEE
Confidence 8889999999999999999999998 45554
No 20
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=1e-55 Score=429.37 Aligned_cols=182 Identities=41% Similarity=0.654 Sum_probs=169.8
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeC-ChhhHhchhccCCcceeccCCCC----
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTL-SPKVVNDIHKRGGTILRTSRGGH---- 220 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L-~~~~V~~~~~~GGS~LGTsR~~~---- 220 (337)
||||||+||||||||++||++++++.+.+ +.+|||+++||+||+++++++| +|++++.|.++|||+|||+|...
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~-g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEY-GWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcC-CceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 69999999999999999999999886433 4699999999999999999999 99999999999999999999842
Q ss_pred --chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHH
Q 019697 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (337)
Q Consensus 221 --d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~ 298 (337)
++++++++|++++||+|++||||||+++|++|+|. + ++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~----g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK----G--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc----C--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999872 3 889999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCC
Q 019697 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVR 336 (337)
Q Consensus 299 i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~ 336 (337)
++++|.|+ +||||||+|||+|||||+++|||+ .+|+
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~ 189 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADV 189 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCE
Confidence 99999997 579999999999999999999998 4554
No 21
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.8e-55 Score=432.84 Aligned_cols=186 Identities=34% Similarity=0.534 Sum_probs=171.1
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC--CeeeCChhhHhchhccCCcceeccCC-C-
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRG-G- 219 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~V~~~~~~GGS~LGTsR~-~- 219 (337)
..||||+||||||||||++||++++++.+.+ +.+|||+++||+||+++ ++++|+|++|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~-g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTY-GWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcC-CCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 4699999999999999999999999887544 46999999999999999 89999999999999999999999973 1
Q ss_pred -----------CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhH
Q 019697 220 -----------HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (337)
Q Consensus 220 -----------~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTA 288 (337)
+++++++++|++++||+|++||||||+++|.+|++. ..|+||||||||||||++||+|||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 246899999999999999999999999999999873 2688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 289 v~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++++++|++++++|.|+ +||||||+|||+|||||++++||++ +|+|
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~g-a~~i 204 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAGG-ADVI 204 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhcC-CCEE
Confidence 999999999999999997 6899999999999999999999984 5553
No 22
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=4.4e-54 Score=454.11 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=174.9
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC--CeeeCChhhHhchhccCCcceeccCCCC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
+++||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~--~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY--VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH--CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 457999999999999999999999998753 467999999999999998 7899999999999999999999999853
Q ss_pred -----chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-----------------HHHHHcCCceeEEEeeccccCCccc
Q 019697 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY-----------------KEVEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 -----d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~-----------------e~~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
++++++++|++++||+|++||||||+++|..|. ++.++++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 478999999999999999999999999999764 2333445678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 279 tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
||+|||||||++.++++|++++++|.|++ |+||||+|||+|||||+++|||++ +|+|
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh~-R~fVVEvMGR~~G~LAl~aglA~g-Ad~i 216 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVSGLATG-ADWI 216 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEECCCCchHHHHHHHhccC-CCEE
Confidence 99999999999999999999999999984 799999999999999999999997 6764
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2e-53 Score=449.67 Aligned_cols=189 Identities=30% Similarity=0.454 Sum_probs=173.6
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC--CeeeCChhhHhchhccCCcceeccCCCC--
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~V~~~~~~GGS~LGTsR~~~-- 220 (337)
+||||+||||||||||++||++++.+.+ .+.+|||+++||+||+++ ++++|+|++|++|+++|||+|||+|++.
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~--~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY--VGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 3899999999999999999999998854 357999999999999999 9999999999999999999999999853
Q ss_pred ---chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-----------------HHHcCCceeEEEeeccccCCccccC
Q 019697 221 ---DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 221 ---d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~-----------------~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
+.++++++|++++||+|++||||||+++|..|+++ ..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 45899999999999999999999999999987653 3444567899999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 281 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 281 ~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+|||||||++.++++||+++++|.|+ +||||||+|||+|||||+++|||++ +|+|
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~g-ad~i 213 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIATG-ADYV 213 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhccC-CCEE
Confidence 99999999999999999999999997 5799999999999999999999995 6654
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=6.6e-53 Score=457.52 Aligned_cols=247 Identities=25% Similarity=0.366 Sum_probs=205.1
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHH--HHhhccC-----CCcccccccCc--ccccccCCCCeeEEEE
Q 019697 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQN--IVIQKDS-----PRGVHFRRAGP--REKVYFKSDEVRACIV 150 (337)
Q Consensus 80 ~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~--~~~~~~~-----~r~~~F~~agp--r~~~~f~~~~~~iaIv 150 (337)
..|.|.+|.+ |++ .+++ ...+.|..+... -...+.| .+...|..+.. .... ....+|||||
T Consensus 39 ~~~~p~lp~~---l~~--~~~~---~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~--~~~~krIGIL 108 (1328)
T PTZ00468 39 RRWEPCLPHI---LRS--PLSI---KEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWK--KFPARRIGVV 108 (1328)
T ss_pred HhcCCCCChH---hcC--ceEE---eecCCcccccCcchHHHHHhCccccCCcceEEeecCCCccccc--cccCCEEEEE
Confidence 5689999988 543 1222 122333332222 1122333 35566766321 1111 1133799999
Q ss_pred ccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCc-ceeccCCC----CchHHH
Q 019697 151 TCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKI 225 (337)
Q Consensus 151 t~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS-~LGTsR~~----~d~~~i 225 (337)
+|||||||||+||+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||+|.+ ++++++
T Consensus 109 tSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~ 188 (1328)
T PTZ00468 109 LSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188 (1328)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHH
Confidence 9999999999999999999876677889999999999999999999999999999999997 99999985 368999
Q ss_pred HHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccc--cCcccCchhHHHHHHHHHHHHHHhh
Q 019697 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEV 303 (337)
Q Consensus 226 v~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~g--tD~S~GfdTAv~~~~~~i~~i~~~A 303 (337)
+++|++++||+||+||||||+++|.+|+|++++++++++|||||||||||+++ ||+|||||||+++++++|++++.+|
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A 268 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAI 268 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 304 ESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 304 ~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
.|+++||||||+|||+|||||++||||+ .+|+|
T Consensus 269 ~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganii 301 (1328)
T PTZ00468 269 KTEGYGYYFVRLMGRSASHITLECGLQT-RANMI 301 (1328)
T ss_pred hhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEE
Confidence 9988899999999999999999999998 55554
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.5e-52 Score=451.41 Aligned_cols=194 Identities=32% Similarity=0.517 Sum_probs=182.9
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCc-ceeccCCC--
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG-- 219 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS-~LGTsR~~-- 219 (337)
.++||||+++||||||||++|+++++++.+..++++||||++||+||+++++++|+|+.|++|+++||+ +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 447999999999999999999999998876567899999999999999999999999999999999997 79999984
Q ss_pred --CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc--ccCcccCchhHHHHHHHH
Q 019697 220 --HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRA 295 (337)
Q Consensus 220 --~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~--gtD~S~GfdTAv~~~~~~ 295 (337)
+++++++++|++++||+|++||||||+++|.+|++++++.+++++|||||||||||++ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 296 i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
|++++.++.+++++|||||+|||+|||||++||||+| +|+|
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtg-Adli 376 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTR-PNIV 376 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcC-CCEE
Confidence 9999999988888899999999999999999999985 4654
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4.7e-49 Score=429.96 Aligned_cols=192 Identities=21% Similarity=0.288 Sum_probs=177.2
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcce-eccCCC-
Q 019697 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL-RTSRGG- 219 (337)
Q Consensus 142 ~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~L-GTsR~~- 219 (337)
..++||||||+||+|||||+|||++++++...++ .++| +.||.||+++++++|+.+.|++|+++||++| ||+|..
T Consensus 834 ~~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g--~~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~ 910 (1419)
T PTZ00287 834 SFEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKG--VCIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHS 910 (1419)
T ss_pred cCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCC--eEEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCC
Confidence 3568999999999999999999999999865433 3455 5599999999999999999999999999988 999962
Q ss_pred ----CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccc--cCcccCchhHHHHHH
Q 019697 220 ----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQ 293 (337)
Q Consensus 220 ----~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~g--tD~S~GfdTAv~~~~ 293 (337)
+.+++++++|++++||+|++||||||+++|..|+|++++.+++++|||||||||||+.+ ||+|||||||++.++
T Consensus 911 f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~s 990 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYA 990 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 294 ~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++|++++.+|.|+++||||||+|||+|||||++||||+| +|+|
T Consensus 991 eaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatg-Anii 1033 (1419)
T PTZ00287 991 SLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTH-PNMV 1033 (1419)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcC-CCEE
Confidence 999999999999998899999999999999999999994 4544
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=4.2e-41 Score=365.80 Aligned_cols=186 Identities=15% Similarity=0.237 Sum_probs=167.0
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCe--eeCC----hhhHhchhccCCcceecc-
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT--LTLS----PKVVNDIHKRGGTILRTS- 216 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~--~~L~----~~~V~~~~~~GGS~LGTs- 216 (337)
.+++|||..|||+||+|+||++++.++.+ . .++||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 675 ~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~---gvig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~ 750 (1328)
T PTZ00468 675 CESLGLILSCLSTPGTQNVICGLVNGLPS-L---KQLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGV 750 (1328)
T ss_pred ceeEEEEecCCCCccHHHHHHHHHHHHHh-C---CcEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeeccc
Confidence 47999999999999999999999998864 2 29999999999999875 4565 578999999999999998
Q ss_pred ---------CCC---------C---------------chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcC---
Q 019697 217 ---------RGG---------H---------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG--- 260 (337)
Q Consensus 217 ---------R~~---------~---------------d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~--- 260 (337)
|.. + +.+.+.+.|++++||+|++||||||+++|..|+|++.+++
T Consensus 751 ~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~ 830 (1328)
T PTZ00468 751 EIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNG 830 (1328)
T ss_pred cccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcccc
Confidence 631 1 3478999999999999999999999999999999987764
Q ss_pred --CceeEEEeeccccCCccc--cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCC
Q 019697 261 --LQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRD 333 (337)
Q Consensus 261 --~~i~VVgIPkTIDNDI~g--tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~ 333 (337)
..|+|||||||||||+++ +|+|||||||++.++++|.++..|+.++++||||||+|||+|||||+++|||+|+
T Consensus 831 ~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLatga 907 (1328)
T PTZ00468 831 MKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTHP 907 (1328)
T ss_pred ccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhhCC
Confidence 469999999999999987 9999999999999999998888787777789999999999999999999999965
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=329.92 Aligned_cols=268 Identities=38% Similarity=0.504 Sum_probs=249.7
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHh--hccCCCcccccccCcccccccCCCCeeE
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVI--QKDSPRGVHFRRAGPREKVYFKSDEVRA 147 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~--~~~~~r~~~F~~agpr~~~~f~~~~~~i 147 (337)
++..|+..+...+.|++|.+++++..++.+|.+...++..++.|.+.+.. .....+..++.+++|+++++|.++.+|+
T Consensus 44 ~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~ 123 (666)
T KOG2440|consen 44 DSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKA 123 (666)
T ss_pred cchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhc
Confidence 68899999999999999999999999999999999999999999998732 3344566789999999999999999999
Q ss_pred EEEccCCCCchhhHHHHHHHHHHh-hhcCCcEEEEEccc----------------cccccCCCe--eeCChhhHhchhcc
Q 019697 148 CIVTCGGLCPGINTVIREIVCGLS-YMYGVDEILGIEGG----------------YRGFYSKNT--LTLSPKVVNDIHKR 208 (337)
Q Consensus 148 aIvt~GG~apGmNavIr~lv~~l~-~~~~~~~v~Gi~~G----------------~~GL~~~~~--~~L~~~~V~~~~~~ 208 (337)
|||||||+|||.|.+|+++|-.+. ..|+...++|+.-+ ++||+.+.. .-+....|..|+..
T Consensus 124 giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~~ 203 (666)
T KOG2440|consen 124 GIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAGG 203 (666)
T ss_pred ceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhcC
Confidence 999999999999999999999886 77888899998776 899998887 45566789999999
Q ss_pred CCcceeccCCCCc---hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCc
Q 019697 209 GGTILRTSRGGHD---TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGF 285 (337)
Q Consensus 209 GGS~LGTsR~~~d---~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~Gf 285 (337)
++++++++|..++ +.++++..++.++|+||||||+++.++|..++|+++++.++..++++||||||||+-.+.+++|
T Consensus 204 aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~af 283 (666)
T KOG2440|consen 204 ADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSAF 283 (666)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCccccc
Confidence 9999999999887 8899999999999999999999999999999999999999999999999999999998888888
Q ss_pred h--hHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 286 D--TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 286 d--TAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
| ||++..+++|.+++.+|.++.+++.+|++|||+|+|+|++++||++++|||
T Consensus 284 Dr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~ 337 (666)
T KOG2440|consen 284 DRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFC 337 (666)
T ss_pred chHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCcccee
Confidence 8 999999999999999999999999999999999999999999999999998
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=303.65 Aligned_cols=255 Identities=21% Similarity=0.233 Sum_probs=232.8
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC----------c
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG----------P 134 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag----------p 134 (337)
-+..|||.++++.+|+ .+.+|+++|+++++++..|..++.++ .++++ +|+.+|..++ |
T Consensus 290 ~~g~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~-~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~ 362 (666)
T KOG2440|consen 290 EMGQEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLAS-RDKDFCLAPELRGRKFTLNLNTYKILDVVDP 362 (666)
T ss_pred HHHHHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhc-CccceeehhhhcchhhhhhhhHHhhhhcccc
Confidence 5668999999999888 58999999999999999999999997 56776 5888888866 3
Q ss_pred cc-ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcce
Q 019697 135 RE-KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL 213 (337)
Q Consensus 135 r~-~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~L 213 (337)
|. +.+|.. +++++|++.|.++.|||++++++++.+. +.++++|++.+||+||..+...++.|.+|..|..+||+.+
T Consensus 363 ~~~~~p~~~-~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~ 439 (666)
T KOG2440|consen 363 RAEQDPFYG-EIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSAL 439 (666)
T ss_pred ccccCCCCc-eeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhh
Confidence 32 233322 2679999999999999999999999885 5789999999999999999999999999999999999999
Q ss_pred eccCCC---CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHH
Q 019697 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (337)
Q Consensus 214 GTsR~~---~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv 289 (337)
||.|.. .+++.|..++++++|++++++||+.++.+...|...+..| ++++++|.||.|+.|++|+|++|.|.|||.
T Consensus 440 gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~ 519 (666)
T KOG2440|consen 440 GTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTAL 519 (666)
T ss_pred eecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhH
Confidence 999973 3899999999999999999999999999999999998888 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCC
Q 019697 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDV 334 (337)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~ 334 (337)
|.+++.++.+++.|..+++++|++|+||.+|||||.+++|+.++.
T Consensus 520 N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~ 564 (666)
T KOG2440|consen 520 NAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGAD 564 (666)
T ss_pred hhhhhhhhhccCCcccccceeEEEEecCCCccceecccccccccc
Confidence 999999999999999999999999999999999999999998764
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.55 E-value=0.22 Score=47.59 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=42.0
Q ss_pred HHHHHhCC------CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhH---HHHHHHHHH
Q 019697 227 DNIEDRGI------NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA---VEEAQRAIN 297 (337)
Q Consensus 227 ~~L~~~~I------d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTA---v~~~~~~i~ 297 (337)
+..++|++ |.+++||||||+-.|...+. +..++|+||-. -++||-|. .+.+.+.++
T Consensus 13 ~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~~l~ 77 (246)
T PRK04761 13 ELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLERIA 77 (246)
T ss_pred HHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHHHHH
Confidence 34456677 99999999999887665532 34688999875 26899884 355566666
Q ss_pred HHHH
Q 019697 298 AAHV 301 (337)
Q Consensus 298 ~i~~ 301 (337)
.+..
T Consensus 78 ~~~~ 81 (246)
T PRK04761 78 AAEP 81 (246)
T ss_pred Hhhc
Confidence 6543
No 31
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.26 E-value=0.28 Score=47.18 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~ 301 (337)
+.|.++++|||||+-.|...+.. .-.++|++||.. -.+||-|.+ +.+.++++++..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHc
Confidence 46899999999998766654331 114688999973 479999974 445666666654
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.26 E-value=0.29 Score=47.65 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~ 301 (337)
+.|.+++||||||+-.|...+. ...+||+||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999765555432 24688999863 479999874 556777777654
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.59 E-value=0.35 Score=46.54 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCC-----CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH--HHHH-
Q 019697 223 NKIVDNIEDRGI-----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQR- 294 (337)
Q Consensus 223 ~~iv~~L~~~~I-----d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~- 294 (337)
+++.+.++.+++ |.+++||||||+-.|...+. ...+||+||-. | ++||-|.++ .+.+
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~-------G---~lGFL~~~~~~~~~~~ 82 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT-------G---HLGFYTSFNETDLDQN 82 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec-------C---CCccccccCHHHHHHH
Confidence 334444544555 99999999999887665543 35688999873 2 799999644 4445
Q ss_pred HHHHH
Q 019697 295 AINAA 299 (337)
Q Consensus 295 ~i~~i 299 (337)
.++.+
T Consensus 83 ~~~~l 87 (259)
T PRK00561 83 FANKL 87 (259)
T ss_pred HHHHH
Confidence 44544
No 34
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.88 E-value=0.55 Score=45.26 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~ 301 (337)
+.|.++++|||||+-.|...... + ..++++||.. +-++||-|.+ +.+.++++++..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 36899999999998766554321 1 1467888864 2489998763 456666666643
No 35
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.42 E-value=0.36 Score=47.49 Aligned_cols=55 Identities=29% Similarity=0.432 Sum_probs=41.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
+.|.++++|||||+-.|..... ...+||+||.. -++||-|.+ +.+.++++.+...
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcC
Confidence 6899999999999877766543 24578999984 478998875 5566777776544
No 36
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.33 E-value=0.65 Score=44.32 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=37.3
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH--HHHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHV 301 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~~i~~i~~ 301 (337)
.+.|.++++|||||+-.|.... .+||+||-. -++||-|..+ .+.++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~----------G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA----------GRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC----------CCCccccccCHHHHHHHHHHHHc
Confidence 4679999999999987665542 578898872 3699998754 34566666543
No 37
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.07 E-value=0.46 Score=46.37 Aligned_cols=56 Identities=29% Similarity=0.365 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHhh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEV 303 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~A 303 (337)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++...-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCC
Confidence 5899999999999776655433 24688999874 379999986 46677777776543
No 38
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=90.96 E-value=0.81 Score=47.05 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=69.6
Q ss_pred CCeeEEEEccCCCCchhhH-HHHHH--HHHHhhh------cCCcEEEEEccccccccC-C---CeeeCChhhHhchhccC
Q 019697 143 DEVRACIVTCGGLCPGINT-VIREI--VCGLSYM------YGVDEILGIEGGYRGFYS-K---NTLTLSPKVVNDIHKRG 209 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNa-vIr~l--v~~l~~~------~~~~~v~Gi~~G~~GL~~-~---~~~~L~~~~V~~~~~~G 209 (337)
++.|||+||+||.-|--|. -|.+. ..+-.+. ....+..-+|.||.--+- . .+..|+ .+..+-..|
T Consensus 222 ~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD--~LreLekEG 299 (431)
T TIGR01918 222 SKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVD--VLRDYEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccccCccceEEeccccChHHHhcCCCeeeeHH--HHHHHHHcC
Confidence 5679999999999998773 44311 1110000 001233345556654431 1 123332 233332222
Q ss_pred --C----cce-----eccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc-HHHHHHHHHHHHHcCCce
Q 019697 210 --G----TIL-----RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQV 263 (337)
Q Consensus 210 --G----S~L-----GTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs-~~~a~~L~e~~~~~~~~i 263 (337)
| .+. ||.+. ...-.+|++.|++-++|++++...=|| .+....+.+++++.|+++
T Consensus 300 ~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 300 KIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred CcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 1 111 22221 245689999999999999999988777 667778899999988653
No 39
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=90.96 E-value=0.8 Score=47.12 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCeeEEEEccCCCCchhhH-HHH--HHHHHHhhh------cCCcEEEEEccccccccC-C---CeeeCChhhHhchhccC
Q 019697 143 DEVRACIVTCGGLCPGINT-VIR--EIVCGLSYM------YGVDEILGIEGGYRGFYS-K---NTLTLSPKVVNDIHKRG 209 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNa-vIr--~lv~~l~~~------~~~~~v~Gi~~G~~GL~~-~---~~~~L~~~~V~~~~~~G 209 (337)
++.|||+||+||+-|--|. -|. ++..+-.+. ....+..-+|.||.--+- . .+..|+ .+..+-..|
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD--~LreLe~EG 299 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVD--VLRDLEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHH--HHHHHHHcC
Confidence 5679999999999987775 232 111111000 011234445666654432 1 133333 333333332
Q ss_pred --C----cce-----eccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc-HHHHHHHHHHHHHcCCceeEEE
Q 019697 210 --G----TIL-----RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 210 --G----S~L-----GTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs-~~~a~~L~e~~~~~~~~i~VVg 267 (337)
| .+. ||++. ...-++|++.|++.++|++++.-.=|| .+....+.+++++.|+++..++
T Consensus 300 ~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~ 371 (431)
T TIGR01917 300 KIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHIC 371 (431)
T ss_pred CcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEe
Confidence 1 111 22222 235688999999999999999987777 6677788999999897654443
No 40
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.30 E-value=0.53 Score=46.02 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
+.|.++++|||||+-.|..... ...+|++||-. -++||-|.+ +.+.++++++...
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHcC
Confidence 6899999999999887766543 24678999873 369999984 4566677766543
No 41
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.21 E-value=0.54 Score=46.20 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
+.|.+++||||||+-.|..... ...++++||-. -++||-|.+ +.+.++++++...
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHHcC
Confidence 6899999999999877665533 35688999953 389999874 4556666665433
No 42
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=90.16 E-value=0.23 Score=47.78 Aligned_cols=65 Identities=25% Similarity=0.522 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAA 299 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i 299 (337)
.....+.+...+.|.++++|||||+..+..... +..+||+||+. -++||-|.. +.+.+++..+
T Consensus 65 ~~~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~ 129 (285)
T PF01513_consen 65 TRNALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKI 129 (285)
T ss_dssp EEECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHH
T ss_pred cchhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHH
Confidence 334455566789999999999999998876643 35789999994 356665553 3344555554
Q ss_pred HH
Q 019697 300 HV 301 (337)
Q Consensus 300 ~~ 301 (337)
..
T Consensus 130 ~~ 131 (285)
T PF01513_consen 130 LA 131 (285)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 43
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.11 E-value=0.71 Score=45.05 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH--HHHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~~i~~i~ 300 (337)
+.|.++++|||||+-.|..... +..++|+||-. -++||-|.++ .+.++++.+.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999877665543 24578998873 3689988855 3455555554
No 44
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=89.87 E-value=0.34 Score=48.56 Aligned_cols=51 Identities=35% Similarity=0.575 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+|+...++.+.++++|-+++.|||||.+.+..-. +-++||.|||.=.-|=.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~S 137 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNYS 137 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccceec
Confidence 6889999999999999999999999998765432 45789999998655544
No 45
>PRK13337 putative lipid kinase; Reviewed
Probab=89.22 E-value=2.2 Score=41.15 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHH
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~ 294 (337)
..+..++++.+.+.+.|.|+++|||||...+..- +...+.++++..||.==-||+. +++|...-.+.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~g---l~~~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~ 112 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNG---IAEKENRPKLGIIPVGTTNDFA---RALHVPRDIEKAAD 112 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHH---HhhCCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHH
Confidence 3567777777777888999999999998876642 2222334678889987788875 34554443444333
No 46
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=88.28 E-value=0.88 Score=47.79 Aligned_cols=55 Identities=31% Similarity=0.399 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
++|.+++||||||+-.|..++. ...+||+||- --++||-|.+ +.+.++++.+...
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHHcC
Confidence 6899999999999887776643 3457899884 3489999875 4456666666543
No 47
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.11 E-value=19 Score=32.62 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=65.0
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCchHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~~~ 224 (337)
+|||+...-..|-...+++++.+.+.+...+..++ +..+.. .+...+
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47778776667888888888888775421111111 111111 122346
Q ss_pred HHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHhhh
Q 019697 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~ 304 (337)
+++.+...++|++++.+.+.. ......+.+.+++ ++||.+-.. .+....++|+|-. .....+.+.+.....
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~--~~~~~i~~~~~~~--ipvv~~~~~----~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSK--GIAPAVKRAQAAG--IVVVAVDVA----AEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChh--HhHHHHHHHHHCC--CeEEEecCC----CCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 677778889999988775532 1122224444444 556666322 2223345666642 222333333333222
Q ss_pred cCCCeEEEEE
Q 019697 305 SVENGVGIVK 314 (337)
Q Consensus 305 S~~~rV~iVE 314 (337)
.+ ++|.++-
T Consensus 120 g~-~~i~~i~ 128 (271)
T cd06321 120 GK-GNVAILN 128 (271)
T ss_pred CC-ceEEEEe
Confidence 33 4566663
No 48
>PRK11914 diacylglycerol kinase; Reviewed
Probab=87.79 E-value=1.1 Score=43.04 Aligned_cols=69 Identities=30% Similarity=0.516 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchh-HHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAI 296 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdT-Av~~~~~~i 296 (337)
.+..++++.+.+.+.|.++++|||||...+.. .+. +.++++..||.==-||+. +++|..+ -.+.+.+.+
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 46777777777788999999999999886643 222 335778889998889987 5778765 355555544
No 49
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.73 E-value=1 Score=43.90 Aligned_cols=55 Identities=29% Similarity=0.409 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
+.|.++++|||||+-.+..... ..+++|+||.. -++||-|.+ +.+.++++.+...
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999887765432 35688999985 369999874 4566777776543
No 50
>PLN02929 NADH kinase
Probab=87.54 E-value=0.99 Score=44.47 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=40.5
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec---cccCCc-cc----cCcccCchhHH--HHHHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK---TIDNDI-AV----IDKSFGFDTAV--EEAQRAINAAHV 301 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk---TIDNDI-~g----tD~S~GfdTAv--~~~~~~i~~i~~ 301 (337)
.+.|.++++|||||+-.|.... ...+||+||-. +.+.-- .. ...++||-+++ +.+.++++++..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 4679999999999987766543 24578999854 221110 00 12389999984 445566666653
No 51
>PRK13055 putative lipid kinase; Reviewed
Probab=87.45 E-value=1.8 Score=42.54 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchh
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdT 287 (337)
..+.+++++.+...+.|.|+++|||||+..+.. .+...+..+++..||.==-||+. +++|..+
T Consensus 45 ~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvn---gl~~~~~~~~LgiiP~GTgNdfA---r~Lgi~~ 107 (334)
T PRK13055 45 PNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVN---GIAPLEKRPKMAIIPAGTTNDYA---RALKIPR 107 (334)
T ss_pred CccHHHHHHHHhhcCCCEEEEECCCCHHHHHHH---HHhhcCCCCcEEEECCCchhHHH---HHcCCCC
Confidence 345667777777788999999999999886553 22222334667889987778775 3555543
No 52
>PRK13054 lipid kinase; Reviewed
Probab=87.37 E-value=2.6 Score=40.52 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHH-HHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHH
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~-L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~ 294 (337)
..+..++++...+.+.|.++++|||||+..+.. |.+. ..+.++++..||.==-||+. +++|-..-.+.+.+
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~ 113 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALK 113 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHH
Confidence 445677777777778999999999999887642 3211 01335678889988888875 34454433333333
No 53
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.69 E-value=1.3 Score=42.80 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH--HHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAA 299 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~~i~~i 299 (337)
+.|.+++||||||+-.|..... ...+||+||-. -++||-|.++ .+.+.+..+
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999887665432 24688999863 4699988653 344444443
No 54
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.53 E-value=0.85 Score=44.11 Aligned_cols=53 Identities=28% Similarity=0.351 Sum_probs=36.9
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH--HHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~~i~~i~ 300 (337)
.+.|.++++|||||+-.|..+. ...++++|||. -++||-|.++ .+.++++++.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~----------G~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM----------GTLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC----------CCCCccccCCHHHHHHHHHHHH
Confidence 4789999999999988766532 23688999994 3568888755 3344444443
No 55
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.30 E-value=1.2 Score=43.52 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHH---HHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA---QRAINAAHV 301 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~---~~~i~~i~~ 301 (337)
+.|.++++|||||+-.+..... +..++++||.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 6899999999999877665432 34678898875 3489999976432 456666554
No 56
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=83.93 E-value=2.1 Score=41.72 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhH--HHHHHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA--VEEAQRAINAAH 300 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTA--v~~~~~~i~~i~ 300 (337)
+.|.++++|||||+-.|..... +..++++||- --.+||-|. .+.+.++++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 5899999999999887766533 3467899987 237899986 455667777664
No 57
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.64 E-value=2.4 Score=41.07 Aligned_cols=52 Identities=27% Similarity=0.343 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
+.|.++++|||||+-.|... +.+||+||-. -.+||-|.+ +.+.++++++...
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~--------~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR--------AKGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------cCCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcC
Confidence 68999999999998765443 2247888853 478998864 4456666666544
No 58
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=83.23 E-value=7.9 Score=40.32 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=60.5
Q ss_pred cEEEEEccccccccCCCeeeCChhhHhchhccCCc---ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHH-H
Q 019697 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT---ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-I 252 (337)
Q Consensus 177 ~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS---~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~-L 252 (337)
.+++-|.|=..|= ++-..+-++.+..+....|- +.-|.+. .+..++++.+...+.|.++++|||||+..+.. |
T Consensus 112 kr~lvIvNP~SGk--g~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGK--KSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCC--cchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 4677777766663 22222223346655554442 3344443 45566777777778999999999999876542 3
Q ss_pred HHHHH-HcCCceeEEEeeccccCCccc
Q 019697 253 YKEVE-KRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 253 ~e~~~-~~~~~i~VVgIPkTIDNDI~g 278 (337)
.+.-. +.+.++++..||.==-||+.-
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhh
Confidence 21100 013468899999988899863
No 59
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=83.16 E-value=5.1 Score=38.38 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=41.7
Q ss_pred ccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHH-HHHHHHHcCCceeEEEeeccccCCcc
Q 019697 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 215 TsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~-L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
+.+...+..++++.+.+.+.|.++++|||||+..+.. |.+. ..+..+++..||.==-||+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 3344456777887777788999999999999887653 3221 11234567888877777763
No 60
>PRK13059 putative lipid kinase; Reviewed
Probab=83.02 E-value=4.2 Score=39.10 Aligned_cols=63 Identities=29% Similarity=0.434 Sum_probs=41.9
Q ss_pred HHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHH
Q 019697 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 228 ~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i 296 (337)
...+.+.+.++++|||||...+. +.+.+.+.++++..||.==-||+. +++|...-.+.+.+.+
T Consensus 51 ~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i 113 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQI 113 (295)
T ss_pred HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHHH
Confidence 34456889999999999988764 333334556788899987788875 3555544444444433
No 61
>PLN02727 NAD kinase
Probab=82.44 E-value=2.1 Score=48.07 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
++|.+++||||||+-.|..+.. +..+||+||-. -++||-|-+ +.+.+.++.+...
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999888777653 34578999873 389999865 4556777766543
No 62
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.74 E-value=2.5 Score=44.85 Aligned_cols=54 Identities=31% Similarity=0.446 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHH
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~ 301 (337)
++|.++++|||||+-.|..... ...+||+||-. -++||-|.+ +.+.++++.+..
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHHc
Confidence 5899999999999877665533 34688999874 479999975 455666666543
No 63
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=81.68 E-value=7.7 Score=40.24 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=63.4
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC
Q 019697 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (337)
Q Consensus 140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~ 219 (337)
.+.-+.+|||||| ++. ||||-+...++++++..+|+-+.-=. ||=.. .
T Consensus 131 LP~~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~V---------------------QG~~A------~ 178 (440)
T COG1570 131 LPFFPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLV---------------------QGEGA------A 178 (440)
T ss_pred CCCCCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCCCc------H
Confidence 3445569999998 554 69999999999889876666332211 11000 1
Q ss_pred CchHHHHHHHHHhC-CCEEEEEcCCccHHHHHHHHHHHHHc---CCceeEEE
Q 019697 220 HDTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVAG 267 (337)
Q Consensus 220 ~d~~~iv~~L~~~~-Id~LviIGGdgs~~~a~~L~e~~~~~---~~~i~VVg 267 (337)
..+-+.++.+.+.+ +|.|++.=|-||......+.||.--+ ..+||||.
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 12334444444555 99999999999999988777765443 56777774
No 64
>PRK00861 putative lipid kinase; Reviewed
Probab=80.57 E-value=4 Score=39.12 Aligned_cols=66 Identities=24% Similarity=0.405 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHH
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~ 292 (337)
..+..++++...+.+.|.++++|||||+..+.. .+.. ..+++..||.==-||+. +++|...-.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~--~~~~lgviP~GTgNdfA---r~lgi~~~~~~a 108 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALIG--TDIPLGIIPRGTANAFA---AALGIPDTIEEA 108 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhc--CCCcEEEEcCCchhHHH---HHcCCCCCHHHH
Confidence 456778888777888999999999999887653 2222 24567778876667664 345544433333
No 65
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=79.46 E-value=18 Score=35.11 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=65.3
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC
Q 019697 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (337)
Q Consensus 140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~ 219 (337)
.+.-+.||||||+ -..+|+..+++.+- +.++..+++-+.-=++| .
T Consensus 10 lP~~p~~I~vITs-~~gAa~~D~~~~~~----~r~~~~~~~~~p~~vQG------------------------------~ 54 (319)
T PF02601_consen 10 LPKFPKRIAVITS-PTGAAIQDFLRTLK----RRNPIVEIILYPASVQG------------------------------E 54 (319)
T ss_pred CCCCCCEEEEEeC-CchHHHHHHHHHHH----HhCCCcEEEEEeccccc------------------------------c
Confidence 3455679999997 44555666665553 34554444432211111 1
Q ss_pred CchHHHHHHHHHh-------CCCEEEEEcCCccHHHHHHHHHHHHHc---CCceeE-EEeeccccCCcc--ccCcccCch
Q 019697 220 HDTNKIVDNIEDR-------GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAV-AGIPKTIDNDIA--VIDKSFGFD 286 (337)
Q Consensus 220 ~d~~~iv~~L~~~-------~Id~LviIGGdgs~~~a~~L~e~~~~~---~~~i~V-VgIPkTIDNDI~--gtD~S~Gfd 286 (337)
.-...|++.|++. ++|.++++=|-||......+-++.--+ ..++|| .||=-.+|.=|. .-|...--.
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ti~D~vAd~ra~TP 134 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDFTIADFVADLRAPTP 134 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCchHHHHHHHhhCCCH
Confidence 1233444444433 399999999999988866654442221 345554 466666665442 235566666
Q ss_pred hHHHH
Q 019697 287 TAVEE 291 (337)
Q Consensus 287 TAv~~ 291 (337)
||+-+
T Consensus 135 taaAe 139 (319)
T PF02601_consen 135 TAAAE 139 (319)
T ss_pred HHHHH
Confidence 76544
No 66
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=77.80 E-value=3.6 Score=40.65 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=46.3
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc--------------CCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~--------------~~~i~VVgIPkTIDNDI 276 (337)
.+.+++++.++++++|.++-|||--++..|+.++-..... +-.+++|.||-|-.+--
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGs 135 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGS 135 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSG
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccc
Confidence 4688999999999999999999999999999988765421 11279999999887643
No 67
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=77.68 E-value=4.8 Score=39.38 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH--cCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--RGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~--~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.+.|.++-|||--++..|..++-.... +.-.+++|.||-|-..+
T Consensus 65 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtg 122 (332)
T cd08180 65 EVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTG 122 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcch
Confidence 356799999999999999999999999999877654332 22347899999986433
No 68
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=77.46 E-value=4.6 Score=39.62 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+.|.++-|||--.+..|..++.. ..+++|.||-|..+|-
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~-----~~~p~i~iPTT~~t~s 116 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYK-----LGIPFISVPTAASHDG 116 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHh-----cCCCEEEecCcccCCc
Confidence 457889999999999999999999999999888732 2467999999976543
No 69
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.99 E-value=5 Score=39.44 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=43.5
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
++.+++++.+++++.|.++-|||--.+..|+.++-. ..+++|.||-|-..+-
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTagTgs 115 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIASTDA 115 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 457788999999999999999999999999988753 2578999999865554
No 70
>PRK13057 putative lipid kinase; Reviewed
Probab=75.97 E-value=6.8 Score=37.34 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
.+..++++. ...+.|.++++|||||+..+..- +.. .++++..||.==-||+.
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~---l~~--~~~~lgiiP~GT~Ndfa 89 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAAPA---LVE--TGLPLGILPLGTANDLA 89 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHHHH---Hhc--CCCcEEEECCCCccHHH
Confidence 345566665 35678999999999998876532 222 34678889987778874
No 71
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.49 E-value=4.6 Score=39.77 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.++|.++-|||--.+..|..++... .+++|.||-|-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 4578999999999999999999999999998887643 47899999986544
No 72
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=75.00 E-value=5.7 Score=39.28 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=43.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-------------CCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-------------~~~i~VVgIPkTIDND 275 (337)
++.+++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|-..+
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 4578899999999999999999999999998886543110 1157899999997544
No 73
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=74.83 E-value=58 Score=28.51 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
|||++..+-..|-.+.++.++-..+.+ . |++ ++. +.+....+...+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~----------g~~------l~~----------------~~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-A----------GYQ------VLL----------------ANSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-c----------CCe------EEE----------------EeCCCCHHHHHHH
Confidence 588898776778888888888777653 1 111 110 0111111235677
Q ss_pred HHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHhhhc
Q 019697 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305 (337)
Q Consensus 226 v~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~S 305 (337)
++.+.+.++|++++.+.+.+... ..+.+.+. ++++|.+-.+.+. .....++++|.. +....+.+.+....
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~--~ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~g-- 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKA--GIPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEKG-- 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhc--CCCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHhc--
Confidence 77777889999999887766543 22333333 4667777666553 112235555543 33334444444332
Q ss_pred CCCeEEEEEe
Q 019697 306 VENGVGIVKL 315 (337)
Q Consensus 306 ~~~rV~iVEv 315 (337)
.++|.++--
T Consensus 118 -~~~i~~i~~ 126 (264)
T cd01537 118 -HRRIALLAG 126 (264)
T ss_pred -CCcEEEEEC
Confidence 356777644
No 74
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=74.81 E-value=2.9 Score=35.05 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=37.4
Q ss_pred chHHHHHHHHHhC-CCEEEEEcCCccHHHHHHHHHHHHHcCC--ceeEEEeeccccCCccccCcccCchhHHHH
Q 019697 221 DTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (337)
Q Consensus 221 d~~~iv~~L~~~~-Id~LviIGGdgs~~~a~~L~e~~~~~~~--~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~ 291 (337)
+.+.+....+..+ .+.++++|||||+..+.. .+.+... ++++..||.==-||+. +++|+.+-...
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~---~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVVN---GLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHHH---HHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHHH---HHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 3445554333333 389999999999887643 2333332 5689999987777764 36676666655
No 75
>PRK12361 hypothetical protein; Provisional
Probab=74.32 E-value=10 Score=39.78 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
..+..++++...+.+.|.++++|||||...+..- +.. .++++..||.==-||+.
T Consensus 283 ~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~---l~~--~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 283 EISAEALAKQARKAGADIVIACGGDGTVTEVASE---LVN--TDITLGIIPLGTANALS 336 (547)
T ss_pred CccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH---Hhc--CCCCEEEecCCchhHHH
Confidence 3456777777777889999999999998876532 222 34678889987777775
No 76
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=74.18 E-value=6.7 Score=37.87 Aligned_cols=54 Identities=33% Similarity=0.510 Sum_probs=39.0
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH--HHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~~i~~i~ 300 (337)
...+.++++|||||+-.+...... ..++|+||=. -++||-|-.+ .+.++++.+.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-----~~~pilgin~----------G~lGFLt~~~~~~~~~~~~~~~ 109 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-----LDIPVLGINL----------GHLGFLTDFEPDELEKALDALL 109 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-----CCCCEEEEeC----------CCcccccccCHHHHHHHHHHHh
Confidence 678999999999999888776542 4478998852 3899999887 2344444443
No 77
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=73.35 E-value=6.9 Score=38.69 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+.|.++-|||--.+..|..++ + .++ +++|.||-|...|-
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~tds 125 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHDG 125 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCCc
Confidence 4578899999999999999999998888888887 2 234 67999999987653
No 78
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=72.49 E-value=6.1 Score=38.28 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.+.|.++-|||--.+..|..++-... + .+++|.||-|-..+
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 35778999999999999999999999999988876532 2 46799999987665
No 79
>PRK06186 hypothetical protein; Validated
Probab=72.37 E-value=7.3 Score=37.00 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCcc--HHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHhhhcC
Q 019697 233 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (337)
Q Consensus 233 ~Id~LviIGGdgs--~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~S~ 306 (337)
++|+++|.||+|. ..+.....+++++++ +|+.|| |+|++.|+=+.++-+- ...+|.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~-g~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVL-GWADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhc-CCcCCCcC
Confidence 5799999999997 455666667666544 445555 9999987655544332 13455553
No 80
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=71.49 E-value=8.6 Score=37.74 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.+.|.++-|||--.+..|..++-.. .+++|.||-|-..+
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 3578899999999999999999999999998887532 57899999886444
No 81
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=71.23 E-value=8.2 Score=38.60 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc--------------CCceeEEEeecc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKT 271 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~--------------~~~i~VVgIPkT 271 (337)
+..+++++.+++++.|.++-|||--.+..|..++-..... ...+++|.||-|
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 3578999999999999999999999999988876543210 124789999986
No 82
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=71.10 E-value=19 Score=35.18 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHH-HHHHHHHHHcCCceeEEEeeccccCCccccCcccCchh-HHHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGA-ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAIN 297 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a-~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdT-Av~~~~~~i~ 297 (337)
.+..++++.+...+.|.+++.|||||...+ .-|++ .+.+. +--||.==-||+. +++|... ....+.+.+.
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAG----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhc----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 368888999888899999999999998743 33433 33332 7778986677764 3666666 3555555554
Q ss_pred H
Q 019697 298 A 298 (337)
Q Consensus 298 ~ 298 (337)
.
T Consensus 117 ~ 117 (301)
T COG1597 117 S 117 (301)
T ss_pred c
Confidence 3
No 83
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=70.92 E-value=1.1e+02 Score=31.99 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=94.1
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
++||.-+ ||-==.||+++.+..+.. +.-+ .++.|.+.|+.. ||- |.=+..|+...
T Consensus 16 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 70 (426)
T PRK15458 16 TNGIYAV---CSAHPLVLEAAIRYALAN--DSPL--------------LIEATSNQVDQF---GGY---TGMTPADFRGF 70 (426)
T ss_pred CceEEEe---cCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5577765 554446888887766532 1122 477888888876 784 55666665444
Q ss_pred H-HHHHHhCCCE-EEEEcCC-------------ccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH
Q 019697 226 V-DNIEDRGINQ-VYIIGGD-------------GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (337)
Q Consensus 226 v-~~L~~~~Id~-LviIGGd-------------gs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~ 290 (337)
+ +.-++.+++. .+++||| ++|..|..+.+...+.|+. -|++=.|++ ..+....+.-+|-++
T Consensus 71 V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA~ 146 (426)
T PRK15458 71 VCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVAE 146 (426)
T ss_pred HHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHHH
Confidence 4 4455678887 9999997 3566677777766667886 588877777 555555666699999
Q ss_pred HHHHHHHHHHHhhh---cCCCeEEEE
Q 019697 291 EAQRAINAAHVEVE---SVENGVGIV 313 (337)
Q Consensus 291 ~~~~~i~~i~~~A~---S~~~rV~iV 313 (337)
.+++.|..+-..+. ..+.-+|+|
T Consensus 147 Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 147 RAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886655542 333457887
No 84
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=70.88 E-value=5.2 Score=39.40 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=40.9
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.+++.++ |.++-|||--.+..|..++-.. .++ +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 457889999999998 9999999999898888776532 234 6799999997
No 85
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=70.67 E-value=12 Score=37.39 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcC--------------CceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG--------------LQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~--------------~~i~VVgIPkTI 272 (337)
+..+++++.+++.++|.++-|||--.+..|..++-....-+ -.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 70 ENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 35789999999999999999999999999988765432111 236899999986
No 86
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=70.16 E-value=18 Score=32.18 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=54.9
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..+|.++ |+.-. ++..++..+.+.|++.++.|.++||-+..+. .+.++.+...+-.++=.+=+....|
T Consensus 46 ~~~v~ll--G~~~~----~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 46 GLRVFLL--GAKPE----VLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCeEEEE--CCCHH----HHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcCCCEEEEECCCCHHH
Confidence 4577776 44433 6666667777889999999999999874321 1245666666555443444434455
Q ss_pred HHHHHHHHh-CCCEEEEEcC
Q 019697 224 KIVDNIEDR-GINQVYIIGG 242 (337)
Q Consensus 224 ~iv~~L~~~-~Id~LviIGG 242 (337)
+.+..+++. +-..++.+||
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHCCCCEEEEece
Confidence 555444444 5667777888
No 87
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=69.96 E-value=6 Score=39.19 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.+++.++ |.++-|||--.+..|..++-.. .+ .+++|.||-|.
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--gip~i~IPTT~ 128 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MR--GIRFIQVPTTL 128 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cC--CCCEEEcCchh
Confidence 457888999999887 9999999999999888776422 22 46799999996
No 88
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=69.47 E-value=60 Score=29.84 Aligned_cols=83 Identities=17% Similarity=0.052 Sum_probs=46.3
Q ss_pred eEEEEccCCC-CchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 146 RACIVTCGGL-CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 146 ~iaIvt~GG~-apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
||+|+....+ ..|+...++.+++.+.+......++....+.......... ++..........+...
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQ-------------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcc-------------cceeeeecCCchhHHH
Confidence 6888887666 7899999999999997643333444433333222111100 1111111111234556
Q ss_pred HHHHHHHhCCCEEEEEc
Q 019697 225 IVDNIEDRGINQVYIIG 241 (337)
Q Consensus 225 iv~~L~~~~Id~LviIG 241 (337)
+.+.+++.+.|.+++.-
T Consensus 68 ~~~~~~~~~~dii~~~~ 84 (366)
T cd03822 68 AARAIRLSGPDVVVIQH 84 (366)
T ss_pred HHHHHhhcCCCEEEEee
Confidence 66777777888776644
No 89
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=69.46 E-value=8.7 Score=38.25 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTI 272 (337)
+..+++++.+++.++|.++-|||--.+..|+.++-.... ....+++|.||-|-
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 457889999999999999999999999998887622110 12357899999875
No 90
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=69.30 E-value=48 Score=30.27 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=59.8
Q ss_pred EEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccC---------CCeeeCChhhHhchhccCCcceeccCC
Q 019697 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG 218 (337)
Q Consensus 148 aIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS~LGTsR~ 218 (337)
+++.+||+.+-.... +.+++ ....++++-.|..=|++ +++=-++++..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~~--~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLWK--KADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhhc--cCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 356778887744433 22222 33578899999866654 344455555565555443334433332
Q ss_pred --CCchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 219 --GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 219 --~~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.-|++++++.+.+++.+-++++|+.|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 247999999999999999999999998
No 91
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=68.54 E-value=44 Score=34.04 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=65.7
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC
Q 019697 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (337)
Q Consensus 140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~ 219 (337)
.+.-+.||||||+- ..+|+..+++. +.+.++..+++-+.==+ || .
T Consensus 131 lP~~p~~I~viTs~-~gAa~~D~~~~----~~~r~p~~~~~~~~~~v---------------------QG---------~ 175 (438)
T PRK00286 131 LPFFPKRIGVITSP-TGAAIRDILTV----LRRRFPLVEVIIYPTLV---------------------QG---------E 175 (438)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHH----HHhcCCCCeEEEecCcC---------------------cC---------c
Confidence 34446799999972 34445555544 44556654554322111 11 1
Q ss_pred CchHHHHHHHHHh---CCCEEEEEcCCccHHHHHHHHHHHHHc---CCceeEE-EeeccccCCcc--ccCcccCchhHHH
Q 019697 220 HDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVA-GIPKTIDNDIA--VIDKSFGFDTAVE 290 (337)
Q Consensus 220 ~d~~~iv~~L~~~---~Id~LviIGGdgs~~~a~~L~e~~~~~---~~~i~VV-gIPkTIDNDI~--gtD~S~GfdTAv~ 290 (337)
.-...|++.|+.. ++|.++++=|-||......+-++.--+ ..++||| ||=--+|.=|. .-|...--.||+-
T Consensus 176 ~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaa 255 (438)
T PRK00286 176 GAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFTIADFVADLRAPTPTAAA 255 (438)
T ss_pred cHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccHHHHhhhccCCChHHHH
Confidence 1234455555443 369999999999988865544432211 4555554 67776666552 3456666677765
Q ss_pred H
Q 019697 291 E 291 (337)
Q Consensus 291 ~ 291 (337)
+
T Consensus 256 e 256 (438)
T PRK00286 256 E 256 (438)
T ss_pred H
Confidence 5
No 92
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=67.98 E-value=10 Score=37.78 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH----------------cCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK----------------RGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~----------------~~~~i~VVgIPkTI 272 (337)
+..+++++.+++.++|.++-|||--++..|+.++-.... ....+++|.||-|-
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTS 136 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence 457889999999999999999999999999887632110 01246899999875
No 93
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=67.87 E-value=11 Score=37.44 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH------------cCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------RGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~------------~~~~i~VVgIPkTI 272 (337)
++.+++++.+++.+.|.++-|||--.+..|+.++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 457889999999999999999999999999877642110 12357899999985
No 94
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=67.85 E-value=1.3e+02 Score=31.20 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
++||.-+ ||-==.||+++.+..++. +.-+ .++.|.+.|+.. ||- |.=+..|+...
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 66 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARAS--GTPV--------------LIEATSNQVNQF---GGY---TGMTPADFRDF 66 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5577765 554446888887766532 1122 477888888876 884 55566665444
Q ss_pred H-HHHHHhCCCE-EEEEcCCc-------------cHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH
Q 019697 226 V-DNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (337)
Q Consensus 226 v-~~L~~~~Id~-LviIGGdg-------------s~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~ 290 (337)
+ +.-++.+++. .+++|||- +|..|..+.+...+.|+. -++|=.|++ ..+...-+.-+|-++
T Consensus 67 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vAe 142 (420)
T TIGR02810 67 VETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVAE 142 (420)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 4 4455678988 99999983 466666666666666886 588888877 222234566689999
Q ss_pred HHHHHHHHHHHhhh---cCCCeEEEE
Q 019697 291 EAQRAINAAHVEVE---SVENGVGIV 313 (337)
Q Consensus 291 ~~~~~i~~i~~~A~---S~~~rV~iV 313 (337)
.+++.|..+-..+. ..+.-+|+|
T Consensus 143 Raa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 143 RAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886655544 434457887
No 95
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=67.82 E-value=9.9 Score=37.42 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+.|.++-|||--.+..|..++.. ..+++|.||-|-..+-
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgs 115 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCA 115 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 357889999999999999999999999999888743 2467999999865554
No 96
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=67.69 E-value=6.8 Score=39.10 Aligned_cols=65 Identities=34% Similarity=0.499 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHhCC----CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH
Q 019697 220 HDTNKIVDNIEDRGI----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I----d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~ 290 (337)
+..+++++.+.+.++ |.++-|||--.+..|..++-.. +++ +++|.||-|. +..+|.+.|.-++++
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i~ 139 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGVN 139 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEEe
Confidence 457888999999998 9999999998888888776532 234 6899999996 233455555555544
No 97
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=67.52 E-value=12 Score=36.81 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.+++++. |.++-|||--.+..|..++-.. .++ +++|.||-|.
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 347888999999888 8999999999999888876432 233 6799999996
No 98
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=67.26 E-value=52 Score=33.83 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=38.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHHHHHc---CCceeEE-EeeccccCCcc--ccCcccCchhHHHHH
Q 019697 234 INQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVA-GIPKTIDNDIA--VIDKSFGFDTAVEEA 292 (337)
Q Consensus 234 Id~LviIGGdgs~~~a~~L~e~~~~~---~~~i~VV-gIPkTIDNDI~--gtD~S~GfdTAv~~~ 292 (337)
+|.++++=|-||......+-+|.--+ ..++||| ||=--+|.=|. .-|...--.||+-+.
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ti~D~vAd~ra~TPtaaae~ 252 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDFTISDFVADLRAPTPSAAAEI 252 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCccHHHHhhhccCCCcHHHHHH
Confidence 79999999999999877665553222 5666665 56666666552 235566666765554
No 99
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.11 E-value=91 Score=28.16 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=50.4
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
.|||+...-.-|-.+.++.++.+.+.+ ++ ..++-. .+....+...+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLIA-------------------------------NSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCChHHHHHH
Confidence 367887766678888888888887764 22 233211 011111224566
Q ss_pred HHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 226 v~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
++.+.+.++|++++.+++.... .+.+.+++++ +++|.+=...+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 7777788888888887653322 2233344444 45555543333
No 100
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=67.09 E-value=10 Score=37.85 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH---------------cCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK---------------RGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~---------------~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.+.|.++-|||--.+..|+.++-.... +.-.+++|.||-|-...
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTG 143 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTA 143 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchh
Confidence 356789999999999999999999999998776542211 01247899999986443
No 101
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=66.42 E-value=13 Score=36.91 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=42.2
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..+++++.+++++.|.++-|||--.+..|..++-. ..+++|.||-|-..|-
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTtagtgS 122 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIASTDA 122 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 56789999999999999999999999999888743 2478999999865553
No 102
>PRK10586 putative oxidoreductase; Provisional
Probab=66.41 E-value=8.2 Score=38.61 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=43.5
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF 283 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~ 283 (337)
++.+++.+..+ .+.|.++-|||--++..|+.++.. ..+++|.||-|-.+|-+.+..+.
T Consensus 74 ~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~av 131 (362)
T PRK10586 74 SDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSV 131 (362)
T ss_pred HHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceE
Confidence 34556655554 588999999999999999988753 35789999999888865554333
No 103
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=65.97 E-value=11 Score=37.35 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-----------------cCCceeEEEeecccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-----------------RGLQVAVAGIPKTID 273 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-----------------~~~~i~VVgIPkTID 273 (337)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|-.
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 134 (367)
T cd08182 64 EDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAG 134 (367)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCC
Confidence 347789999999999999999999999998887654211 123578999999964
No 104
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=65.51 E-value=24 Score=31.81 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=36.3
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+.+--|+.+.+.+++++.++.+++.++.+.|-...-.- .++- ....||||+|-..
T Consensus 32 V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg-vva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 32 VVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG-MVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred EECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH-HHHh-----ccCCCEEEecCCc
Confidence 34455777788999999999999777666555332221 1221 3568899999744
No 105
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=65.44 E-value=15 Score=37.00 Aligned_cols=122 Identities=15% Similarity=0.258 Sum_probs=70.7
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCC---eeeCChhhHhchhccCCcceeccCC
Q 019697 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRG 218 (337)
Q Consensus 142 ~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~V~~~~~~GGS~LGTsR~ 218 (337)
...+||.|+=+|| |.|++|..+.+.-. .+-+.+.+.-..++|.... -+.+..+...++..-+--.+|-.-.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~~---~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEGV---EGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhhh---CceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 3467999999998 55667777665432 3468888888888886432 2222222222211111112221111
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHH---HHHHHHHHHHHcC-CceeEEEeecc
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQK---GAALIYKEVEKRG-LQVAVAGIPKT 271 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~---~a~~L~e~~~~~~-~~i~VVgIPkT 271 (337)
.++.++|.+.|+. .|.+|++=|.|--+ +|-.+++.+++++ +-++|+..|-+
T Consensus 83 ee~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~ 137 (338)
T COG0206 83 EESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFS 137 (338)
T ss_pred HHHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecch
Confidence 3466777777765 55777775554432 3566788887774 45777777754
No 106
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=64.98 E-value=1e+02 Score=29.04 Aligned_cols=29 Identities=7% Similarity=-0.074 Sum_probs=22.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
...||++...-.-|-.+.++.++...+.+
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~ 92 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA 92 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH
Confidence 34899998766678888888888887754
No 107
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=64.93 E-value=12 Score=37.18 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTI 272 (337)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 457899999999999999999999999998887653211 01257899999984
No 108
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=64.73 E-value=14 Score=37.29 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-------------CCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-------------~~~i~VVgIPkTI 272 (337)
+..++.++.+++.+.|.++-|||--++..|+.++-..... .-.+++|.||-|-
T Consensus 93 ~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTta 158 (395)
T PRK15454 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTA 158 (395)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCC
Confidence 3477899999999999999999999999998875432111 1246899999874
No 109
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=64.36 E-value=15 Score=36.59 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.+.|.++-|||--.+..|+.++-.... ....+++|.||-|-..+
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTg 140 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTA 140 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcch
Confidence 357889999999999999999999999999887632111 12357899999886433
No 110
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=64.16 E-value=19 Score=34.19 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHH-HHHHHHHcCCceeEEEeeccccCCcc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~-L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
...++...+.+.+.++++|||||+..+.. |.+ ..-..++.-||.==-||+.
T Consensus 47 ~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 47 ARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LDDIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CCCCCcEEEEcCcCHHHHH
Confidence 34455555668999999999999887654 322 1112234449987777765
No 111
>PRK15138 aldehyde reductase; Provisional
Probab=64.14 E-value=13 Score=37.50 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc----------------CCceeEEEeecc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR----------------GLQVAVAGIPKT 271 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~----------------~~~i~VVgIPkT 271 (337)
++.+++++.+++.+.|.++-|||--++..|+.++-..... .-.+++|.||-|
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT 139 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL 139 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC
Confidence 4578999999999999999999999999988876432110 124689999987
No 112
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=63.61 E-value=12 Score=37.26 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH------------------cCCceeEEEeeccccC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------------RGLQVAVAGIPKTIDN 274 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~------------------~~~~i~VVgIPkTIDN 274 (337)
+..+++++.+++.++|.++-|||--.+..|+.++-.... .+-.+++|.||-|-..
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagT 142 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGT 142 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChh
Confidence 457788999999999999999999999998887643210 0124789999988643
No 113
>PLN02834 3-dehydroquinate synthase
Probab=63.55 E-value=8.8 Score=39.52 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHhCCC---EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id---~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.+.++++| .++-|||--.+..|..++-.. .++ +++|.||-|.
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl 199 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV 199 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC
Confidence 3567888999999988 999999999888887765432 234 6899999994
No 114
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=63.40 E-value=10 Score=37.80 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHH
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~ 291 (337)
+..+++++.+.+.+. |.++.|||--++..|..++-.. .+| ++.+.||.|.- ..+|.++|.-|++|.
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~-~rg--i~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIY-MRG--VSWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHH-HcC--CCeEEecccHH---HhhhccccccceecC
Confidence 357889999999999 8999999998888888776533 345 47899999862 233555565565553
No 115
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=63.26 E-value=19 Score=36.20 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~ 253 (337)
+..+++++.+++.++|.++-|||--++..|..++
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 65 ETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3578899999999999999999999999988876
No 116
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=61.98 E-value=27 Score=29.30 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=46.7
Q ss_pred CChhhHhchhccCCcceeccCC----CC-chHHHHHHHHHhCCCEEEEEcC-CccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 197 LSPKVVNDIHKRGGTILRTSRG----GH-DTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 197 L~~~~V~~~~~~GGS~LGTsR~----~~-d~~~iv~~L~~~~Id~LviIGG-dgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
+...++..|...|--+|-|.-. .+ ...+.++.|.+.++-+|.+--| +-- .--..+.+++.+++ +|++.+|.
T Consensus 31 ~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 31 MEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred eecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcC--CCEEEeCC
Confidence 3334677786555555555432 22 3788999999999999999555 333 33355556666656 56899997
No 117
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=61.71 E-value=1.2e+02 Score=29.36 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=56.1
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceecc-CCCCc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-RGGHD 221 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs-R~~~d 221 (337)
+..+||++..+-..|--+.+++++.+.+.+ ++ ..++ +.++ .....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 467999999888888888899998888864 22 2222 1111 11123
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+.++.+...++|++++.+.+.... ....+.+.+++ ++||.+-..+
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCC
Confidence 45677888888999999987553211 12223334444 5677664444
No 118
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=61.57 E-value=18 Score=36.35 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeecccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTID 273 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTID 273 (337)
++.+++++.+++.+.|.++-|||--++..|+.++-.... ....+++|.||-|=.
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTag 141 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAG 141 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCc
Confidence 357899999999999999999999999999887642111 023578999998763
No 119
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=61.30 E-value=15 Score=37.26 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=48.8
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.++.+++++.+.+.+.|.++=|||--++..|+.++.. +.+++|.||-+=++|=+.+.
T Consensus 70 ~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 70 EEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAITSP 126 (360)
T ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCccccccccCC
Confidence 4578888888888899999999999999999988764 46789999999999986554
No 120
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=61.11 E-value=17 Score=35.78 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
+..+++++..++.+.|.++-|||--.+..|..++-. +.+++|.||-|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~gt 114 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIASN 114 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcccc
Confidence 356788888899999999999999999999888754 24689999987533
No 121
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=61.02 E-value=16 Score=36.55 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHH--------Hc-------CCceeEEEeecccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE--------KR-------GLQVAVAGIPKTID 273 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~--------~~-------~~~i~VVgIPkTID 273 (337)
+..+++++.+++.+.|.++-|||--.+..|+.++-... ++ .-.+++|.||-|-.
T Consensus 74 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTag 142 (382)
T PRK10624 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAG 142 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCc
Confidence 35678889999999999999999999999876653211 11 12478999998853
No 122
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=60.23 E-value=16 Score=36.57 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHhCCC---EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhH
Q 019697 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id---~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTA 288 (337)
+..+++++.+++.++| .++-|||--.+..|..++-.. .++ +++|.||-|. ...+|.++|--++
T Consensus 68 ~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl---la~~da~i~~k~~ 133 (355)
T cd08197 68 STLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL---LAQSDSVLSLKQA 133 (355)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc---cccccccccCcee
Confidence 3578899999999998 999999988888887776432 234 6799999985 2344555554443
No 123
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=58.56 E-value=1.3e+02 Score=26.67 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=39.5
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHHH
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv 226 (337)
|||+...-..|-.+..+.++-+.+.+ ++ .++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67777666677777777777776643 22 2221 111111222334666
Q ss_pred HHHHHhCCCEEEEEcCCcc
Q 019697 227 DNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 227 ~~L~~~~Id~LviIGGdgs 245 (337)
+.|...++|++++.+.+.+
T Consensus 49 ~~l~~~~~dgii~~~~~~~ 67 (259)
T cd01542 49 ELLARQKVDGIILLATTIT 67 (259)
T ss_pred HHHHhcCCCEEEEeCCCCC
Confidence 7778889999999877644
No 124
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=58.40 E-value=24 Score=35.20 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHh---CCCEEEEEcCCccHHHHHHHHHHHHHc-------------CCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~---~Id~LviIGGdgs~~~a~~L~e~~~~~-------------~~~i~VVgIPkTI 272 (337)
++.+++++..++. ++|.++-|||--++..|+.++-..... +-.+++|.||-|=
T Consensus 65 ~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 65 DQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 3467888888888 999999999999999998876443210 1136799999875
No 125
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=57.64 E-value=17 Score=36.69 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhCCC---EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHH
Q 019697 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (337)
Q Consensus 222 ~~~iv~~L~~~~Id---~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~ 291 (337)
.+++++.+.+++.+ .++-+||-=....|..++-. ..+| +++|.||-| =+.-+|.+.|--|++|.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 56889999999998 99999998888888777654 3345 679999999 22345556666666554
No 126
>PRK05670 anthranilate synthase component II; Provisional
Probab=57.30 E-value=19 Score=32.26 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+.++.|+|++-||.|+...+....+.+++..-++||.||
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI 78 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV 78 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence 455688888888888875543333322221223445554
No 127
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=57.29 E-value=11 Score=31.70 Aligned_cols=42 Identities=36% Similarity=0.494 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCc---eeEEEeeccccCCcc
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIPKTIDNDIA 277 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~---i~VVgIPkTIDNDI~ 277 (337)
..+.++++|||||...+.. .+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999887643 22222222 788999987788885
No 128
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.28 E-value=52 Score=29.21 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=26.6
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccc
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYR 187 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~ 187 (337)
.++.++ ||. + .++..+...+.+.|++.++.|.++||-
T Consensus 49 ~~ifll--G~~-~---~~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 49 KRIFLL--GGS-E---EVLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CeEEEE--eCC-H---HHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 455554 444 3 356666677778899999999999976
No 129
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=56.89 E-value=19 Score=35.90 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHH----------Hc-------CCceeEEEeecc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE----------KR-------GLQVAVAGIPKT 271 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~----------~~-------~~~i~VVgIPkT 271 (337)
+..+++++.+++.+.|.++-|||--.+..|..++-... .. +-.+++|.||-|
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 35778899999999999999999999999887764321 00 124789999988
No 130
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=56.84 E-value=54 Score=27.96 Aligned_cols=86 Identities=23% Similarity=0.451 Sum_probs=51.7
Q ss_pred EEEEEccccccccC----------CCeeeCChhhHhchhccCCcceeccCCC--CchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 178 EILGIEGGYRGFYS----------KNTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 178 ~v~Gi~~G~~GL~~----------~~~~~L~~~~V~~~~~~GGS~LGTsR~~--~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
-++++-.|..=+++ +++=-++++..+.+...|-.++-.. .+ .|++++++.+.+++.+-++++|+.|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 45555555554433 3444566666666666655555444 32 47899999999999999999999996
Q ss_pred -----HHHHHHHHHHHHHcCCceeE
Q 019697 246 -----QKGAALIYKEVEKRGLQVAV 265 (337)
Q Consensus 246 -----~~~a~~L~e~~~~~~~~i~V 265 (337)
+.....|.++. +.+.++.+
T Consensus 97 R~DH~lanl~~l~~~~-~~~~~i~l 120 (123)
T PF04263_consen 97 RFDHTLANLNLLYKYK-KRGIKIVL 120 (123)
T ss_dssp SHHHHHHHHHHHHHHH-TTTSEEEE
T ss_pred cHHHHHHHHHHHHHHH-HcCCeEEE
Confidence 33344444443 34555444
No 131
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.49 E-value=42 Score=32.02 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=49.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..++.++ ||... ++..+++.+.+.| +.++.|.++||-.- + -....++.|...+-.+|=-+=+....|
T Consensus 105 ~~~v~ll--G~~~~----v~~~a~~~l~~~y-~l~i~g~~~Gyf~~---~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGKPE----VLAQTEAKLRTQW-NVNIVGSQDGYFTP---E---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCCHH----HHHHHHHHHHHHh-CCEEEEEeCCCCCH---H---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 3566665 55544 6666666676678 78999999998631 1 012245666666655443333323334
Q ss_pred HHHHHH-HHhCCCEEEEEcC
Q 019697 224 KIVDNI-EDRGINQVYIIGG 242 (337)
Q Consensus 224 ~iv~~L-~~~~Id~LviIGG 242 (337)
..+..+ +.++...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 444443 3446666777777
No 132
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=56.47 E-value=27 Score=34.67 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-----------------CCceeEEEeecccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-----------------GLQVAVAGIPKTID 273 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-----------------~~~i~VVgIPkTID 273 (337)
+..+++++.+++.+.|.++-|||--.+..|..++-..... +-.+++|.||-|-.
T Consensus 68 ~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 138 (370)
T cd08192 68 AAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAG 138 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCc
Confidence 3578889999999999999999999999988776543210 12378999999864
No 133
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=55.92 E-value=18 Score=26.57 Aligned_cols=50 Identities=8% Similarity=0.251 Sum_probs=36.7
Q ss_pred eeccCCCCchHHHHHHHHHhCCCE------------EEEEcCCccHHHHHHHHHHHH-HcCCc
Q 019697 213 LRTSRGGHDTNKIVDNIEDRGINQ------------VYIIGGDGTQKGAALIYKEVE-KRGLQ 262 (337)
Q Consensus 213 LGTsR~~~d~~~iv~~L~~~~Id~------------LviIGGdgs~~~a~~L~e~~~-~~~~~ 262 (337)
+|+-+..++.++.++.|++.+++. -+.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 566666677888999999998884 678899999999988888887 45554
No 134
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.86 E-value=23 Score=35.33 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTIDND 275 (337)
+..+++++.+++.+.|.++-|||--.+..|+.++-.... ....+++|.||-|-..+
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG 141 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATG 141 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchh
Confidence 457788999999999999999999999988876543211 02357899999886433
No 135
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=55.74 E-value=72 Score=27.60 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=63.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHh-chhccCCcceeccC-C---
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVN-DIHKRGGTILRTSR-G--- 218 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~-~~~~~GGS~LGTsR-~--- 218 (337)
+.+|.+.+.||+.=.+..-+-+.. + +. .|.+++ |.|. ....+.+- ......-.+++-|- .
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--l-r~-~G~eVi-----~LG~------~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--L-TE-AGFEVI-----NLGV------MTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--H-HH-CCCEEE-----ECCC------CCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 447777778888665554443332 2 22 334554 3332 23333332 23333333444332 1
Q ss_pred CCchHHHHHHHHHhCC-CEEEEEcCCccHHH--HHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHH
Q 019697 219 GHDTNKIVDNIEDRGI-NQVYIIGGDGTQKG--AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~I-d~LviIGGdgs~~~--a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~ 295 (337)
.....++++.|++.+. +..+++||.-+... .....+.+++.|+ |..|+-+|-.+.++..
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~------------------~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF------------------DRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC------------------CEEECcCCCHHHHHHH
Confidence 2457788888888877 56688888754321 3344455555553 3344445555666555
Q ss_pred HHHH
Q 019697 296 INAA 299 (337)
Q Consensus 296 i~~i 299 (337)
++..
T Consensus 130 l~~~ 133 (137)
T PRK02261 130 LKKD 133 (137)
T ss_pred HHHH
Confidence 5543
No 136
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=55.73 E-value=13 Score=38.91 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHH
Q 019697 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (337)
Q Consensus 221 d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~ 291 (337)
..+++++.+.++++ +.++.+||--....|..++... .|| |+.|.||-|.- ..+|-|+|-=|++|.
T Consensus 222 ~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTll---a~vDssiggK~~vn~ 289 (488)
T PRK13951 222 HVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTLL---AQVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccHH---HHHhcCCCCCeeeeC
Confidence 47899999999999 9999999988888777766543 346 66899999974 456777777777765
No 137
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=55.70 E-value=24 Score=31.87 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=40.6
Q ss_pred CCCchHHHHHHHHH---hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 218 GGHDTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 218 ~~~d~~~iv~~L~~---~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
+.-|...+++.++- .++|.++++-||+-+.- |.+.++++|..+-++|.|+.
T Consensus 87 G~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 87 GDVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred CcccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 35688888888776 69999999999999985 45566677988888887753
No 138
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=55.49 E-value=1.1e+02 Score=28.85 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=37.9
Q ss_pred eeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 213 LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
|.++....+.++.++.|.++++|++++.+-.........+.+ . .+|+|.+=.+.+++
T Consensus 36 l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 36 LCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNP 92 (279)
T ss_dssp EEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTT
T ss_pred EecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCc
Confidence 444444455568899999999999999966665343333322 2 57788887777776
No 139
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=54.14 E-value=48 Score=28.29 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=52.5
Q ss_pred cccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc--CC
Q 019697 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GL 261 (337)
Q Consensus 184 ~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~--~~ 261 (337)
.|..||+-.++.-++|++..++.. .+|.+++++.++++.=++++ ||--=....+..|.+.++++ +-
T Consensus 26 ~GITGFyl~eYkGmSP~~wkgf~l-----------~EDpe~ai~~I~d~s~~aV~-I~TVV~~~~~~~i~~~i~ekL~~e 93 (110)
T PF10126_consen 26 GGITGFYLHEYKGMSPQDWKGFLL-----------DEDPEMAIKAINDLSENAVL-IGTVVDEEKVEKIEKLIKEKLKNE 93 (110)
T ss_pred cCccEEEeEeecCCChHHhcCccc-----------ccCHHHHHHHHHHhccCcEE-EEEEECHHHHHHHHHHHHHHhcCC
Confidence 567788888888888877766432 28999999999999888765 44444456666776666554 44
Q ss_pred ceeEEEeec
Q 019697 262 QVAVAGIPK 270 (337)
Q Consensus 262 ~i~VVgIPk 270 (337)
+-.++.+|-
T Consensus 94 ryTii~iPi 102 (110)
T PF10126_consen 94 RYTIIEIPI 102 (110)
T ss_pred ceEEEEeeE
Confidence 555777774
No 140
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=53.96 E-value=33 Score=33.44 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=43.4
Q ss_pred CCchHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccc
Q 019697 219 GHDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 219 ~~d~~~iv~~L~~~-~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
....+++.+.+++. +.|.++-|||--.+..|..++.. + .+++|.||-|..+|-..
T Consensus 60 ~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 60 NSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGIA 115 (331)
T ss_pred ccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCccc
Confidence 35677888888777 59999999999999999888762 3 46799999998876533
No 141
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=53.37 E-value=27 Score=34.62 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHH-----------------cCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEK-----------------RGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~--Id~LviIGGdgs~~~a~~L~e~~~~-----------------~~~~i~VVgIPkTI 272 (337)
++.+++++.+++.+ .|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 136 (355)
T TIGR03405 65 AQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTA 136 (355)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCC
Confidence 34678888888877 9999999999999988776543111 01247899999885
No 142
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=53.34 E-value=72 Score=30.23 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=61.8
Q ss_pred CchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC---CCchHHHHHHHHHh
Q 019697 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (337)
Q Consensus 156 apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~ 232 (337)
+|....-.+.+++++.+..+..++.-+...+. +. ..+.......+...|+.+.+..+. ..|+...+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444445566666544344455554443322 11 111112223344567777765543 45788999999999
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
+-|.+++.|..+ .+..+.+.+++.+++.++++.-
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 223 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVASS 223 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEccC
Confidence 999988877443 3445667777778888887653
No 143
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=53.04 E-value=2.9e+02 Score=28.83 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=90.8
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
.+||--+ ||-==.||+++.+..++. +.-+ .++.|.+.|+.. ||- |.=+..|+...
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS--TRKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4566665 444446888887766532 1122 467888888876 784 55566665444
Q ss_pred H-HHHHHhCCCE-EEEEcCC-------------ccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH
Q 019697 226 V-DNIEDRGINQ-VYIIGGD-------------GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (337)
Q Consensus 226 v-~~L~~~~Id~-LviIGGd-------------gs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~ 290 (337)
+ +.-++.+++. .+++||| ++|..|..+.+...+.||. -++|=.|++ ..+...-+.-+|-++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 4 4455678888 9999998 3466666666666666886 588888877 222234566688999
Q ss_pred HHHHHHHHHHHhhh--cCCCeEEEE
Q 019697 291 EAQRAINAAHVEVE--SVENGVGIV 313 (337)
Q Consensus 291 ~~~~~i~~i~~~A~--S~~~rV~iV 313 (337)
.+++.|..+-..+. ..+.-+|+|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 99988886655544 333457887
No 144
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=52.66 E-value=31 Score=34.55 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=39.8
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH------c-------CCceeEEEeecc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------R-------GLQVAVAGIPKT 271 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~------~-------~~~i~VVgIPkT 271 (337)
+..+.++.+++.+.|.++-|||--.+..|..++-.... + +-.+++|.||-|
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 45677888889999999999999999999888754321 0 125789999998
No 145
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=52.59 E-value=26 Score=34.38 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
..+++++.+++ +.|.++-|||--.+..|..++ +. + .+++|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~--gip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--V--GKPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--c--CCCEEEeCCCcccC
Confidence 46778888888 999999999999999888887 32 2 36799999998554
No 146
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=52.11 E-value=24 Score=31.79 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 227 ~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+.+.+++.|+|++-||.|+......-.+.+++..-++||.||
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI 78 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV 78 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE
Confidence 445677899999999998865422211222221224566665
No 147
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=52.00 E-value=37 Score=33.90 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-------CC------ceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------GL------QVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-------~~------~i~VVgIPkTI 272 (337)
..+++++.+++.+.|.++-|||--.+..|+.++-..... +. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 467788889999999999999999999987765422110 11 36899999986
No 148
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=51.27 E-value=2.5e+02 Score=27.56 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=95.2
Q ss_pred EEccCCCCchhh-HHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCC-cceeccCC-----CCc
Q 019697 149 IVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRG-----GHD 221 (337)
Q Consensus 149 Ivt~GG~apGmN-avIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GG-S~LGTsR~-----~~d 221 (337)
|+.+||..=-++ .-+..+++.+.. .+..+.+ +-|-+.... +...++.+.++.+...|= ..+++.-. .++
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~v~~i--ri~Tr~~v~-~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDHVKIV--RFHTRVPVA-DPARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCCccEE--EEeCCCccc-ChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 667888766553 578888888865 3322223 333444322 223457777776666552 23444321 234
Q ss_pred hHHHHHHHHHhCCCEEE---EE-cCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVY---II-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lv---iI-GGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~ 297 (337)
..+.++.|++.||..+. ++ |=+++......|.+.+.+.+...--+.... .+++ +--|.+..+.+.+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g---~~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPG---TAHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCC---cccccCcHHHHHHHHH
Confidence 67778888899986633 44 556777777888888777665433333322 2223 2345677777777777
Q ss_pred HHHHhhhcCCCeEEEEEecCCC
Q 019697 298 AAHVEVESVENGVGIVKLMGRY 319 (337)
Q Consensus 298 ~i~~~A~S~~~rV~iVEvMGR~ 319 (337)
.++....+.-..-+++|+.|+.
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7776655544456889988865
No 149
>PRK05637 anthranilate synthase component II; Provisional
Probab=51.21 E-value=35 Score=31.53 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=25.6
Q ss_pred HHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 227 ~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+.+++.+.+++++-||-|+...+....+.+++..-++||.||
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI 79 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI 79 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE
Confidence 444567888888889999987765433333221113555554
No 150
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=51.12 E-value=33 Score=34.94 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTI 272 (337)
..++.++.+++.+.|.++-+||--++..|..++-.... ..-+.++|.||-|=
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCC
Confidence 46788999999999999999999999988876544331 11226889999885
No 151
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=51.00 E-value=27 Score=34.30 Aligned_cols=46 Identities=7% Similarity=0.226 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+++++.+++ +.|.++-|||--.+..|..++.. ..+++|.||-|-
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~-----~~~p~i~IPTTa 114 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK-----TGIPYISVPTAP 114 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh-----cCCCEEEecCcc
Confidence 45677777777 99999999999999999888742 246799999984
No 152
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=50.93 E-value=1.2e+02 Score=23.67 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=49.2
Q ss_pred EEEccCCCCc-hhhHHHHHHHHHHhhhcCCcEE-EEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 148 CIVTCGGLCP-GINTVIREIVCGLSYMYGVDEI-LGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 148 aIvt~GG~ap-GmNavIr~lv~~l~~~~~~~~v-~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
.++.-|.+-| ..|..++.+.+.+.+..+...+ +|+.+. ...+++.+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3455678887 8999999999988765432222 122221 34578889
Q ss_pred HHHHHHhCCCEEEEE-----cCCccH-HHHHHHHHHHH
Q 019697 226 VDNIEDRGINQVYII-----GGDGTQ-KGAALIYKEVE 257 (337)
Q Consensus 226 v~~L~~~~Id~LviI-----GGdgs~-~~a~~L~e~~~ 257 (337)
++.|++.+++.++++ -|..+. .-...+.+..+
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHHH
Confidence 999999898887764 455555 33344444443
No 153
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=50.32 E-value=30 Score=36.68 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=44.5
Q ss_pred CCEEEEEcCCccHH--HHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHhhhcCC----
Q 019697 234 INQVYIIGGDGTQK--GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE---- 307 (337)
Q Consensus 234 Id~LviIGGdgs~~--~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~S~~---- 307 (337)
+|+++|-||+|.-- +-....++++++ ++|..|| |+|++.|+=+.++-+-.+. .|.|+.
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn--~iP~lGI-------------ClGmQ~aviE~ARnv~Gl~-~AnS~Efdp~ 407 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYAREN--NIPFLGI-------------CLGMQLAVIEFARNVLGLE-GANSTEFDPD 407 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhc--CCCEEEE-------------chhHHHHHHHHHHHhcCCc-cCcccccCCC
Confidence 99999999999633 333344555543 3455655 9999999888777554333 444432
Q ss_pred CeEEEEEecCCCc
Q 019697 308 NGVGIVKLMGRYS 320 (337)
Q Consensus 308 ~rV~iVEvMGR~s 320 (337)
-..-||.+|....
T Consensus 408 t~~pVv~l~~eq~ 420 (533)
T COG0504 408 TKYPVVDLMPEQK 420 (533)
T ss_pred CCCceEEeccccc
Confidence 1234777776543
No 154
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=49.61 E-value=1.2e+02 Score=29.74 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHh--CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~--~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
..++.++++.+++. +.++++|.-|-+||.-...+....-+ +++.+||-.=+-.--+.+.+|
T Consensus 56 ~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~-~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 56 PEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLD-NLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEE-S-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhc-CCCCCEEEeCCcCCCcCCCCc
Confidence 34566666665555 69999999999999886665554432 345666655333333444444
No 155
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=49.34 E-value=37 Score=33.83 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=48.0
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccc-cc--cccCCCeeeCChhhHhchhccCCcceeccCC-CCc
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGG-YR--GFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G-~~--GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d 221 (337)
||.| .+||...=+..+ ++.+.+++..+..+++|+-++ .+ |+- ...++....+.++.. .|..-+. ..-
T Consensus 7 ki~i-~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~~m~~~g~~--~~~~~~~l~v~G~~~----~l~~~~~~~~~ 77 (385)
T TIGR00215 7 TIAL-VAGEASGDILGA--GLRQQLKEHYPNARFIGVAGPRMAAEGCE--VLYSMEELSVMGLRE----VLGRLGRLLKI 77 (385)
T ss_pred eEEE-EeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccHHHHhCcCc--cccChHHhhhccHHH----HHHHHHHHHHH
Confidence 4443 345544446666 677777655555677886542 11 111 112333333333321 1211110 123
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDG 244 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdg 244 (337)
+.++.+.+++.+.|.++.+||-+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~ 100 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD 100 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC
Confidence 46888889999999999999844
No 156
>CHL00101 trpG anthranilate synthase component 2
Probab=49.20 E-value=25 Score=31.68 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.5
Q ss_pred HHHhCCCEEEEEcCCccHHH
Q 019697 229 IEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~ 248 (337)
+.+.++|+|++.||.++...
T Consensus 39 ~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HhhCCCCEEEECCCCCChHH
Confidence 45567899999999988654
No 157
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.98 E-value=1.6e+02 Score=27.12 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=43.4
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCccee-ccCCCCchHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR-TSRGGHDTNK 224 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LG-TsR~~~d~~~ 224 (337)
+||++...-.-|....++.++.+.+.+ ++ ..++ +. +....++..+
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~--------------------------------~~~~~~~~~~~~~ 47 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLR--------------------------------ILDGRGSEAGQAA 47 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEE--------------------------------EECCCCCHHHHHH
Confidence 688888766778888888888887753 22 2221 11 1111223457
Q ss_pred HHHHHHHhCCCEEEEEcCCc
Q 019697 225 IVDNIEDRGINQVYIIGGDG 244 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdg 244 (337)
+++.+..+++|++++.+.+.
T Consensus 48 ~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCH
Confidence 88889999999999998653
No 158
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=48.52 E-value=32 Score=34.94 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHH-------H-------cC-----CceeEEEeecc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE-------K-------RG-----LQVAVAGIPKT 271 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~-------~-------~~-----~~i~VVgIPkT 271 (337)
+..+++++.+++.++|.++-|||--.+..|+.++-... + ++ -.+++|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 137 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTT 137 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCC
Confidence 45788999999999999999999999999877652211 0 11 22689999999
No 159
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.33 E-value=1.1e+02 Score=29.50 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
..++.++.+++.+++++++. |=.+..+..+.+.++++++..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46777888888888888884 55677777777777777777555455655
No 160
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.95 E-value=1.2e+02 Score=25.20 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=22.8
Q ss_pred hchhccCCcceeccCC----CCchHHHHHHHHHhCC-CEEEEEcCCcc
Q 019697 203 NDIHKRGGTILRTSRG----GHDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (337)
Q Consensus 203 ~~~~~~GGS~LGTsR~----~~d~~~iv~~L~~~~I-d~LviIGGdgs 245 (337)
......+-.+++-|-. .+...++++.|++.+. +..+++||...
T Consensus 44 ~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 44 EAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3344444444444332 1245666666776655 55666777654
No 161
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=47.80 E-value=38 Score=34.36 Aligned_cols=63 Identities=25% Similarity=0.394 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhCCC---EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHH
Q 019697 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (337)
Q Consensus 222 ~~~iv~~L~~~~Id---~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~ 290 (337)
.+++.+.+++++.+ .++-|||--+...|..++-. ..++ +++|.||-| =+..+|.+.|.-++++
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT---lla~vda~~g~~~~v~ 162 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGIN 162 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC---CccccCCCccchhhee
Confidence 78899999999998 99999999888888777643 2234 679999999 1233444444444443
No 162
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.79 E-value=2.1e+02 Score=25.66 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc-CcccCchhHHHHHHHHHHHHHH
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHV 301 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt-D~S~GfdTAv~~~~~~i~~i~~ 301 (337)
.+.++.+...++|++++..++... ...+.+++.+++ +++|.+ |++.+.. -.+++.|- .+....+.+.+..
T Consensus 45 ~~~l~~~~~~~vdgii~~~~~~~~--~~~~i~~~~~~~--ipvV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~~ 115 (273)
T cd06305 45 ADQIDQAIAQKVDAIIIQHGRAEV--LKPWVKRALDAG--IPVVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLVK 115 (273)
T ss_pred HHHHHHHHHcCCCEEEEecCChhh--hHHHHHHHHHcC--CCEEEe----cCCCCCCccceeeech-HHHHHHHHHHHHH
Confidence 456666777899999998876431 122234444555 445544 3332211 12455432 1233334444444
Q ss_pred hhhcCCCeEEEEE
Q 019697 302 EVESVENGVGIVK 314 (337)
Q Consensus 302 ~A~S~~~rV~iVE 314 (337)
....+ ++|.++-
T Consensus 116 ~~~g~-~~i~~i~ 127 (273)
T cd06305 116 DLGGK-GNVGYVN 127 (273)
T ss_pred HhCCC-CCEEEEE
Confidence 33344 4577764
No 163
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.71 E-value=1.7e+02 Score=25.15 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=37.5
Q ss_pred hHhchhccCCcceeccCC----CCchHHHHHHHHHhCC-CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 201 VVNDIHKRGGTILRTSRG----GHDTNKIVDNIEDRGI-NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 201 ~V~~~~~~GGS~LGTsR~----~~d~~~iv~~L~~~~I-d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
.++.....+..+++=|-. .+...++++.|++.+. +..+++||.=.-... +++++
T Consensus 45 ~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~----------------- 103 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDF----DELKE----------------- 103 (132)
T ss_pred HHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHH-----------------
Confidence 344444555544443332 1235566666666655 445666654432221 12222
Q ss_pred ccccCcccCchhHHHHHHHHHHH
Q 019697 276 IAVIDKSFGFDTAVEEAQRAINA 298 (337)
Q Consensus 276 I~gtD~S~GfdTAv~~~~~~i~~ 298 (337)
.|.|..|+-.|-+..+.+.+..
T Consensus 104 -~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 104 -MGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred -CCCCEEECCCCCHHHHHHHHHH
Confidence 2455666666666666665544
No 164
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=47.59 E-value=1.5e+02 Score=25.47 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=45.7
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC---ccccCcccCchhHHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND---IAVIDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND---I~gtD~S~GfdTAv~~~~~~i 296 (337)
.+..++++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+.+.+++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 34667777888889999988877755433 334444444 5677664443321 111223344444555554444
Q ss_pred HHHHHhhhcCCCeEEEEE
Q 019697 297 NAAHVEVESVENGVGIVK 314 (337)
Q Consensus 297 ~~i~~~A~S~~~rV~iVE 314 (337)
.... .+++.++=
T Consensus 120 ~~~~------~~~i~~i~ 131 (269)
T cd01391 120 AEKG------WKRVALIY 131 (269)
T ss_pred HHhC------CceEEEEe
Confidence 3332 34577664
No 165
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=47.26 E-value=27 Score=34.65 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhC---CCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~---Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+++++.+++++ .|.++-|||--.+..|..++... .++ +++|.||-|.
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl 119 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL 119 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc
Confidence 4678888888877 89999999998888888776542 234 6799999984
No 166
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=47.21 E-value=83 Score=23.08 Aligned_cols=51 Identities=24% Similarity=0.474 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
...+++++..++.|++.+.+-= -+++.+...+.+.++++++++ ++|+-.++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 4588999999999999876654 447888888888888888763 67776554
No 167
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=47.11 E-value=90 Score=29.44 Aligned_cols=94 Identities=14% Similarity=0.291 Sum_probs=56.9
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEcccc------ccc--cCCCeeeCCh--hhHhch----hccCC
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGY------RGF--YSKNTLTLSP--KVVNDI----HKRGG 210 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~------~GL--~~~~~~~L~~--~~V~~~----~~~GG 210 (337)
+||||+-.-|-+. ..+...+.. ++|+|.+|-.-- +|+ ++.++.+++. +++.+. ...|+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~~--RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEALK--RGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHHh--CCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5899998666554 344455543 678999986432 444 3456666666 444442 12222
Q ss_pred cceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 211 TILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 211 S~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
.. +.-. ....+.+++.|+.-+..-|+++||-||+.-
T Consensus 73 ~~--~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 73 GA--SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred CC--CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 11 0000 012466788888889999999999999753
No 168
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=46.99 E-value=23 Score=31.75 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.6
Q ss_pred HHHHHhCCCEEEEEcCCccHHH
Q 019697 227 DNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 227 ~~L~~~~Id~LviIGGdgs~~~ 248 (337)
+.+++++.++|++-||-++-..
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHh
Confidence 3355677888888888877544
No 169
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.90 E-value=2.2e+02 Score=25.61 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=39.8
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHHH
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv 226 (337)
|||+...-..|-.+.+++++-..+.+ ++ ..++-+ -+....+...+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVLLC-------------------------------NTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHHHH
Confidence 67777665667777777777776653 22 222100 0111123345778
Q ss_pred HHHHHhCCCEEEEEcCC
Q 019697 227 DNIEDRGINQVYIIGGD 243 (337)
Q Consensus 227 ~~L~~~~Id~LviIGGd 243 (337)
+.|...++|++++.+..
T Consensus 49 ~~l~~~~vdgiIi~~~~ 65 (273)
T cd06292 49 EDLLARGVRGVVFISSL 65 (273)
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999998854
No 170
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.87 E-value=79 Score=28.61 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=47.8
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
.++.++ ||. |+ ++..+.+.+.+.|++.++.|. +||-. . +-..+.++.|...+-.+|--.-+...-|.
T Consensus 49 ~~vfll--G~~-~~---v~~~~~~~l~~~yP~l~i~g~-~g~f~---~---~~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GGK-PD---VLQQLKVKLIKEYPKLKIVGA-FGPLE---P---EERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CCC-HH---HHHHHHHHHHHHCCCCEEEEE-CCCCC---h---HHHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 455555 444 43 555566667777999999887 66642 1 11123466666666665544444444455
Q ss_pred HHHHH-HHhCCCEEEEEcC
Q 019697 225 IVDNI-EDRGINQVYIIGG 242 (337)
Q Consensus 225 iv~~L-~~~~Id~LviIGG 242 (337)
.+... ..++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 44444 3334444555666
No 171
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=46.61 E-value=23 Score=33.60 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=57.8
Q ss_pred EEEEEccccccccCCCeeeCChhhHhchhccCCc--ce-eccCC--CCchHHHHHHHHHhCCCEEEEEcCCccHH-----
Q 019697 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT--IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQK----- 247 (337)
Q Consensus 178 ~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS--~L-GTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs~~----- 247 (337)
..+-+.+|-.| .....++.....+...+|- +. =|+|. ...++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 45555555554 2233455555566666652 11 24454 34688889999999999999999986543
Q ss_pred -------HHHHHHHHHHHc---CCceeEEEee
Q 019697 248 -------GAALIYKEVEKR---GLQVAVAGIP 269 (337)
Q Consensus 248 -------~a~~L~e~~~~~---~~~i~VVgIP 269 (337)
.+..|.+.+++. ++.+.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 377787877763 5777788777
No 172
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=45.51 E-value=2.7e+02 Score=26.27 Aligned_cols=69 Identities=4% Similarity=0.078 Sum_probs=43.4
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
.+||++...-..+=...+++++-+.+.+ ++ .+++-+ -+....+...+
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 106 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILC-------------------------------NAWNNLEKQRA 106 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4889998766667777788888777753 22 222210 01111122346
Q ss_pred HHHHHHHhCCCEEEEEcCCccH
Q 019697 225 IVDNIEDRGINQVYIIGGDGTQ 246 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs~ 246 (337)
.++.+.+.++|++++.+++...
T Consensus 107 ~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 107 YLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHcCCCEEEEecCCCCH
Confidence 6778888999999999876443
No 173
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=45.24 E-value=2.6e+02 Score=26.05 Aligned_cols=68 Identities=7% Similarity=0.126 Sum_probs=41.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
..||++...-.-|-.+.++.++-..+.+ ++ .+++-.. +....+...+
T Consensus 57 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 103 (327)
T PRK10423 57 RTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVLCN-------------------------------TEGDEQRMNR 103 (327)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4789888655567778888888777754 22 2222100 0001122346
Q ss_pred HHHHHHHhCCCEEEEEcCCcc
Q 019697 225 IVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs 245 (337)
.++.|...++|++++.+.+..
T Consensus 104 ~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 104 NLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCcc
Confidence 667777888898888876643
No 174
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=44.36 E-value=2.3e+02 Score=25.22 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=48.1
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
.||++...-..|-.+.++.++.+.+.+ ++ ..++-+ .+.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIG-------------------------------NSDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHHH
Confidence 367777655667778888888777653 22 233211 011111234467
Q ss_pred HHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEE
Q 019697 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 226 v~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVg 267 (337)
++.+...++|++++.+.+.... ..+.+++.+ +++|.
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--ipvV~ 83 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE----QLEDLLKRG--IPVVF 83 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH----HHHHHHhCC--CCEEE
Confidence 7888888999999988765432 134444445 44553
No 175
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=43.91 E-value=49 Score=27.85 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeE
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAV 265 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~V 265 (337)
+.+.+.+.+++++||.+++-=-........++.+++++.+.++.+
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 467888999999999999998888888888999999887765444
No 176
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=43.75 E-value=17 Score=36.70 Aligned_cols=69 Identities=25% Similarity=0.266 Sum_probs=44.5
Q ss_pred eeCChhhHhchhccCCcceeccCCC-----CchHHHHHHHHHhCC-----------------CEEEEEcCCccHHHHHH-
Q 019697 195 LTLSPKVVNDIHKRGGTILRTSRGG-----HDTNKIVDNIEDRGI-----------------NQVYIIGGDGTQKGAAL- 251 (337)
Q Consensus 195 ~~L~~~~V~~~~~~GGS~LGTsR~~-----~d~~~iv~~L~~~~I-----------------d~LviIGGdgs~~~a~~- 251 (337)
-.|+++.+..+...-||..|---.. .....+++.|.+-+| |.++-+||||||-.|.-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 5678888888777666654421111 124566666666554 78999999999876544
Q ss_pred HHHHHHHcCCceeEEEee
Q 019697 252 IYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 252 L~e~~~~~~~~i~VVgIP 269 (337)
+.+ -..|||||-
T Consensus 125 v~~------~~~PViGvN 136 (395)
T KOG4180|consen 125 VID------DSKPVIGVN 136 (395)
T ss_pred hhc------cCCceeeec
Confidence 433 357889873
No 177
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=43.55 E-value=33 Score=28.63 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
--+.++|++..++.+++. +.||-|.+.-...|++.+++.|+ .++|-
T Consensus 60 yl~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 60 YLNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TTSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred hccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 358899999999997776 56999999999999999988775 45653
No 178
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=43.20 E-value=96 Score=29.55 Aligned_cols=70 Identities=21% Similarity=0.384 Sum_probs=51.1
Q ss_pred eeCChhhHhchhccCCcceeccCC-CCchHHHHHHHHHhCCCEEEEE----cCCccHHHHHHHHHHHHHcCCceeEE
Q 019697 195 LTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYII----GGDGTQKGAALIYKEVEKRGLQVAVA 266 (337)
Q Consensus 195 ~~L~~~~V~~~~~~GGS~LGTsR~-~~d~~~iv~~L~~~~Id~LviI----GGdgs~~~a~~L~e~~~~~~~~i~VV 266 (337)
++++++.+-......+..-.||-- ..++.++.+.+.+.+-+.+++| |=.||+..|...++.. .+.+|.|+
T Consensus 40 ~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi 114 (280)
T PF02645_consen 40 VDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI 114 (280)
T ss_dssp TTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE
T ss_pred CCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE
Confidence 378998888877667777777764 4578888888888999988887 5678888888888876 34455444
No 179
>PLN02204 diacylglycerol kinase
Probab=42.85 E-value=35 Score=36.93 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=42.6
Q ss_pred cEEEEEccccccccCCCeeeCChhhHhchhccCC---cceeccCCCCchHHHHHH---HHHhCCCEEEEEcCCccHHHHH
Q 019697 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDN---IEDRGINQVYIIGGDGTQKGAA 250 (337)
Q Consensus 177 ~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GG---S~LGTsR~~~d~~~iv~~---L~~~~Id~LviIGGdgs~~~a~ 250 (337)
.+++-|.|=+.|= +.-. -.|+.|..+....| .++-|.|.++-.+ +++. +...+.|+++++|||||+..+.
T Consensus 160 k~llVivNP~sGk--g~~~-~~~~~V~p~f~~a~i~~~v~~T~~aghA~d-~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGK--GSGS-RTWETVSPIFIRAKVKTKVIVTERAGHAFD-VMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCC--cchH-HHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 4666676666552 2211 23666777666555 2566777644333 3332 2356789999999999987654
No 180
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=41.73 E-value=2.5e+02 Score=24.94 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC-cccCch--hHHHHHHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFD--TAVEEAQRAINA 298 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD-~S~Gfd--TAv~~~~~~i~~ 298 (337)
..++++.+...++|++++.+.+.+.. +.+++++++ +++|.+ |++.+... .++++| .+.+.+++.+..
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 45667778889999999998654322 233344444 556655 22222211 233443 455554444422
Q ss_pred HHHhhhcCCCeEEEEE
Q 019697 299 AHVEVESVENGVGIVK 314 (337)
Q Consensus 299 i~~~A~S~~~rV~iVE 314 (337)
.++ ++|.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 233 5677774
No 181
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=41.26 E-value=53 Score=29.09 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=12.3
Q ss_pred HHhCCCEEEEEcCCccH
Q 019697 230 EDRGINQVYIIGGDGTQ 246 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~ 246 (337)
...++|+|++-||.++.
T Consensus 36 ~~~~~dgiil~GG~~~~ 52 (178)
T cd01744 36 LKLDPDGIFLSNGPGDP 52 (178)
T ss_pred hhcCCCEEEECCCCCCh
Confidence 44578888888887654
No 182
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=40.99 E-value=29 Score=25.87 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~ 250 (337)
..+.++.|++|+|| |+-||+-|+..|.
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 35678899999999 7999999877654
No 183
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=40.90 E-value=2.5e+02 Score=26.09 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhc-hhccCCcceeccCC---CCchHHHHHHHHHh
Q 019697 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND-IHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (337)
Q Consensus 157 pGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~-~~~~GGS~LGTsR~---~~d~~~iv~~L~~~ 232 (337)
|.-....+.++..+.+.++..++.-+.... .+-.-..+.+.. +...|.++.++... ..|+...+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~ 189 (334)
T cd06342 116 ARDDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAA 189 (334)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc
Confidence 333445556666554444444554443211 111111122222 33456666665543 35788888888888
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
+.+.+++.|. +. .+..+.+.+++.+++.++++..
T Consensus 190 ~~~~vi~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~ 223 (334)
T cd06342 190 NPDAVFFGGY-YP--EAGPLVRQMRQLGLKAPFMGGD 223 (334)
T ss_pred CCCEEEEcCc-ch--hHHHHHHHHHHcCCCCcEEecC
Confidence 8887776553 22 2334556666677777676654
No 184
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=40.55 E-value=21 Score=34.22 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+.+++++.++..+.|.++-+||--...-++..+.. .+++.+.||-+.+||=
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDG 113 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecccccccc
Confidence 45677778877899999999997766666666544 3578999999999996
No 185
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.54 E-value=1.6e+02 Score=25.64 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=45.6
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChh-hHhchhccCCccee-ccCC---CC
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILR-TSRG---GH 220 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~-~V~~~~~~GGS~LG-TsR~---~~ 220 (337)
+|-+-+.||+.=-+..-+-.. +.+. .+.+|+ +.|. +.+++ .++.....+-.++| |+.. ..
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~---~l~~-~GfeVi-----~LG~------~v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDH---AFTN-AGFNVV-----NLGV------LSPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred eEEEEEecCChhhHhHHHHHH---HHHH-CCCEEE-----ECCC------CCCHHHHHHHHHHcCCCEEEEecccccCHH
Confidence 667777888865443322222 2222 234554 3332 22322 34444444444554 2222 23
Q ss_pred chHHHHHHHHHhCC-CEEEEEcCCcc
Q 019697 221 DTNKIVDNIEDRGI-NQVYIIGGDGT 245 (337)
Q Consensus 221 d~~~iv~~L~~~~I-d~LviIGGdgs 245 (337)
.+.++++.|++.++ +..+++||.-.
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 57889999999998 55567888643
No 186
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=40.50 E-value=2.7e+02 Score=24.94 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
..+.++.+.+.++|++++.+.+... ...+.+.+.+++ +|+|.+-
T Consensus 45 ~~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~l~~~~--iPvv~~~ 88 (272)
T cd06301 45 QLSQVENFIAQGVDAIIVVPVDTAA--TAPIVKAANAAG--IPLVYVN 88 (272)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--hHHHHHHHHHCC--CeEEEec
Confidence 4567777888999999998866421 123334444444 5667553
No 187
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.33 E-value=3.1e+02 Score=25.52 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=47.7
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccC-CCCchHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHDTNK 224 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR-~~~d~~~ 224 (337)
+||++...-.-|-...+++++-+.+.+ ++ .++.- ++.+. ......+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~~-------------------------------~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAIY-------------------------------VGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEEE-------------------------------ECCCCCCHHHHHH
Confidence 467777554567777888888777754 22 22220 11111 1123456
Q ss_pred HHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.++.+...++|++++.+.+. .....+.+.+++.+. +||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~--~~~~~~~~~~~~~~i--PvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDP--DALEPVLKKAREAGI--KVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCH--HHHHHHHHHHHHCCC--eEEEE
Confidence 66777778999999987552 222233344444454 45544
No 188
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=40.04 E-value=36 Score=28.18 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=23.9
Q ss_pred HHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 226 v~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
.+.+.+..++.++++-||+-+..+. +.++++|.++-+++.+...
T Consensus 88 ~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~ 131 (146)
T PF01936_consen 88 LELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSA 131 (146)
T ss_dssp HHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS
T ss_pred HHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCC
Confidence 3444445679999999999887654 4445678888888864443
No 189
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=39.97 E-value=2.8e+02 Score=26.25 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=20.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 258 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~ 258 (337)
..+.+.+.++++++|.++. +-++.......+.+.+.+
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~ 93 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEE 93 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHH
Confidence 4567777778888886554 444443333344444443
No 190
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=39.96 E-value=1.9e+02 Score=26.89 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=42.3
Q ss_pred hhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 205 ~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+...|++++.+... ..|+...+..+++.+.+.+++.+..+ .+..+.+++++.++++++++.
T Consensus 160 ~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 160 FKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYT---EVGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchh---hHHHHHHHHHHcCCCCcEEec
Confidence 33457777765442 45788889999999999888776554 334455666677888777765
No 191
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=39.96 E-value=3.4e+02 Score=25.95 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=52.4
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC-
Q 019697 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH- 220 (337)
Q Consensus 142 ~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~- 220 (337)
.++.+||++...-.-|-.+.++.++.+.+.+ +++..++ +.++....
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 4556888887655567778888888777754 2211221 11122212
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
...+.++.|...++|++++.+.+..... ...+.+++.++ ++|.+=
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~l~~l~~~gi--PvV~vd 113 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP--TVIEKARGQDV--PVVFFN 113 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH--HHHHHHHHCCC--cEEEEc
Confidence 2335677888999999999987753322 22244444454 455553
No 192
>PRK05261 putative phosphoketolase; Provisional
Probab=39.88 E-value=4.8e+02 Score=29.43 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=31.1
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEE--EEEcccccccc
Q 019697 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEI--LGIEGGYRGFY 190 (337)
Q Consensus 140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v--~Gi~~G~~GL~ 190 (337)
..++.+|--.+-=-|-|||+|-+-..+-+-.. .|.-..+ .|-=+|-.+++
T Consensus 39 l~~~~~K~r~~GHwGt~pgln~vyahln~li~-~~~~~~~~V~g~GHg~p~~~ 90 (785)
T PRK05261 39 LKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIR-KYDLNMIYITGPGHGGPAMV 90 (785)
T ss_pred CCHHHCCcccCCCCCCcHHHHHHHHHHHHHHh-hcCCceEEEeCCCccHHHHH
Confidence 34555666666667899999987666665443 4443433 34446666665
No 193
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=39.88 E-value=1e+02 Score=32.62 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHH
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~ 251 (337)
+||.-...-|+..+.+.|++.||+.+.++.|+.++.....
T Consensus 207 liG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~ 246 (513)
T TIGR01861 207 YVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRG 246 (513)
T ss_pred EeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh
Confidence 3443333458899999999999999999999998776444
No 194
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=39.55 E-value=72 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.+++...++++|.++++.||+-+..+.. .++++|.++.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~---~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVE---RLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHH---HHHHcCCEEEEEccC
Confidence 3445555668999999999998877654 344568888888777
No 195
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=39.49 E-value=2.4e+02 Score=27.62 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=45.2
Q ss_pred HhchhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 202 VNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 202 V~~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
...+...|+.+.+..+. ..|+...+..++..+-|.+++ +|++. . +..+.+.+++.|++.++++.
T Consensus 182 ~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~-~~~~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 182 KDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-E-MGQILRQAREAGLKTQFMGP 248 (369)
T ss_pred HHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-H-HHHHHHHHHHCCCCCeEEec
Confidence 34466778888776554 468999999999999998765 44443 2 23355667777888888765
No 196
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=39.43 E-value=2.7e+02 Score=24.63 Aligned_cols=66 Identities=24% Similarity=0.459 Sum_probs=42.0
Q ss_pred hhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 205 ~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+...|..+.+.... ..+....+..+++.+.+.+++.+..+ .+..+.+.+++.++++++++...+-.
T Consensus 159 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 159 LKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEecCccCC
Confidence 34455555444332 24677888888888888887776542 33445566667787888887765543
No 197
>PLN02335 anthranilate synthase
Probab=39.37 E-value=45 Score=31.03 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=24.2
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+..++.++|++-||-++-.......+.+++.+-.+||.||
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI 97 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV 97 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe
Confidence 4456788999999999876543333333333334555555
No 198
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.18 E-value=55 Score=31.98 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=42.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCchH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~~ 223 (337)
-.||++..--.-|=...+++++-..+.+ ++ ..+ +|..+.. .+..+
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHH
Confidence 3677776544446677777777777753 22 222 3444443 34567
Q ss_pred HHHHHHHHhCCCEEEEEc
Q 019697 224 KIVDNIEDRGINQVYIIG 241 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIG 241 (337)
++.+.+...++|++++.|
T Consensus 105 ~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 105 EYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 888999999999999999
No 199
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=39.09 E-value=2.5e+02 Score=26.89 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=43.0
Q ss_pred chhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEE
Q 019697 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 204 ~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVg 267 (337)
.+...|+++....+. ..|+...+..|++.+-+.+++.+... .+..+.+.+++.++++++++
T Consensus 161 ~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 161 ALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 345567777665544 45788999999999999988877433 33345666777788877776
No 200
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.81 E-value=53 Score=31.36 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
.++.++.+++.+++++++- |........+.+.+++++++.-.+.-|.|=+..
T Consensus 104 ~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er 155 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER 155 (256)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 4666777777777777776 556666666777777777765556666664333
No 201
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=38.28 E-value=3.2e+02 Score=25.53 Aligned_cols=87 Identities=14% Similarity=0.222 Sum_probs=44.9
Q ss_pred CEEEEEcCCc----cHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHhhhcCCCeE
Q 019697 235 NQVYIIGGDG----TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV 310 (337)
Q Consensus 235 d~LviIGGdg----s~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV 310 (337)
-.|++.||.+ ..+.-..+++++.++|+.+-.+=.|.-=+++ + ...+++...+.+..+++.++......+ ++
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~--~--~~~~~~~~~~d~~~~~~~l~~~~~g~~-~i 102 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE--G--ENLGFEGIDADIAAAIDAFREAAPHLR-RI 102 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHHHhhCCCCC-cE
Confidence 4677788764 4444456778887778764444333222211 1 113555556666777777665432222 34
Q ss_pred EEEEecCCCc-cHHHHHHHH
Q 019697 311 GIVKLMGRYS-GFISMYATL 329 (337)
Q Consensus 311 ~iVEvMGR~s-G~LA~~aaL 329 (337)
.+ +|-+. |++|+..+.
T Consensus 103 ~l---~G~S~Gg~~a~~~a~ 119 (274)
T TIGR03100 103 VA---WGLCDAASAALLYAP 119 (274)
T ss_pred EE---EEECHHHHHHHHHhh
Confidence 43 34444 445554443
No 202
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.97 E-value=44 Score=31.94 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=41.3
Q ss_pred ccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc----------HHHHHHHHHHHHHc--CCceeEEEeec
Q 019697 215 TSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT----------QKGAALIYKEVEKR--GLQVAVAGIPK 270 (337)
Q Consensus 215 TsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs----------~~~a~~L~e~~~~~--~~~i~VVgIPk 270 (337)
|+|. ...++..+..+...||+.+++++||-. +..|..|-+.+++. .+.|-+++.|-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4454 235777788889999999999999976 23466676776664 57788888775
No 203
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.92 E-value=35 Score=34.14 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=46.1
Q ss_pred hCCCEEEEEcCCccH---HHHHHHHHHHHHc-----CCceeEEEeeccccCCc-------cccCcccCchhHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQ---KGAALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 232 ~~Id~LviIGGdgs~---~~a~~L~e~~~~~-----~~~i~VVgIPkTIDNDI-------~gtD~S~GfdTAv~~~~~~i 296 (337)
..++.+++-||.-++ .....|.+.++++ +..+.+-.=|.|++.+. ..+-.|+|.+|.-...-+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 579999999999997 4445555566552 34677888899998775 34556999888876554433
No 204
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=37.30 E-value=2.7e+02 Score=26.01 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=61.4
Q ss_pred CchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC---CCchHHHHHHHHHh
Q 019697 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (337)
Q Consensus 156 apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~ 232 (337)
.|..-...+.+++++.+.++..++.-+..... .-..+.......+...|+.+.+..+. ..|+..++..+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~-----~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~ 189 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKKLGAKKVAIVYPDDP-----YGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSA 189 (343)
T ss_dssp S--HHHHHHHHHHHHHHTTTTSEEEEEEESSH-----HHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHHHcCCcEEEEEecCch-----hhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhc
Confidence 45555667777777655455556655533211 01122223344455677776665443 46789999999999
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCcee-EEEeeccccC
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVA-VAGIPKTIDN 274 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~-VVgIPkTIDN 274 (337)
+.|.+++.++-. .+..+.+++.+.+++.+ +...+-..++
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
T PF13458_consen 190 GPDVVVLAGDPA---DAAAFLRQLRQLGLKPPRIPLFGTSLDD 229 (343)
T ss_dssp TTSEEEEESTHH---HHHHHHHHHHHTTGCSCTEEEEEGGGSS
T ss_pred CCCEEEEeccch---hHHHHHHHHHhhccccccceeeccccCc
Confidence 999966666332 23344455556666643 4344444444
No 205
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=37.28 E-value=89 Score=27.37 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=29.3
Q ss_pred chHHHHHHHHHh--CCCEEEEEcCCccH-HHHHHHHHHHHHcCCceeE
Q 019697 221 DTNKIVDNIEDR--GINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAV 265 (337)
Q Consensus 221 d~~~iv~~L~~~--~Id~LviIGGdgs~-~~a~~L~e~~~~~~~~i~V 265 (337)
+.+++.+.+++. .+.++.+-||. .+ .....|.+++++.|+++.+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEE
Confidence 455666666655 57889999999 54 3356777777777766433
No 206
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=37.03 E-value=44 Score=30.04 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=34.6
Q ss_pred CChhhHhchhccCCcceeccCCCC-chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 197 LSPKVVNDIHKRGGTILRTSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 197 L~~~~V~~~~~~GGS~LGTsR~~~-d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.|+..++.+...| ..+-.-|..+ + ++.+++.+.|+|++-||-|+-.......+.+++...++|+.||
T Consensus 11 ft~nl~~~l~~~g-~~v~v~~~~~~~----~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 11 FTWNLYQYFCELG-ADVLVKRNDALT----LADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV 78 (187)
T ss_pred cHHHHHHHHHHCC-CcEEEEeCCCCC----HHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE
Confidence 3455555555553 3332333321 2 2344556788999999988876543333333322234555555
No 207
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=36.74 E-value=37 Score=35.90 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=37.4
Q ss_pred hHHHHHHHHHh---CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 222 TNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 222 ~~~iv~~L~~~---~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
.+++++.+.+. +.|.++-|||--.+..|..++.-. .+| +++|.||-|.
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl 305 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL 305 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH
Confidence 46777888888 489999999988888888776532 234 6799999986
No 208
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=36.34 E-value=2.5e+02 Score=26.67 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=46.3
Q ss_pred hchhc--cCCcceeccCC---C-CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 203 NDIHK--RGGTILRTSRG---G-HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 203 ~~~~~--~GGS~LGTsR~---~-~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
..+.. .|+.+++..+. . .|+...+..+++.+.|.+++.+..+ .+..+.+.+++.|++.++++..
T Consensus 165 ~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 234 (342)
T cd06329 165 AMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTPY 234 (342)
T ss_pred HHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEecc
Confidence 44555 77888776544 3 5788889999999999998877443 3445667777788888887654
No 209
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=35.90 E-value=3.4e+02 Score=25.32 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=60.0
Q ss_pred CchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceeccCC---CCchHHHHHHHHH
Q 019697 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIED 231 (337)
Q Consensus 156 apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTsR~---~~d~~~iv~~L~~ 231 (337)
++.-....+.+++++.+ .+..++.-+.. +..+ ...-......+...|+.+...... ..|....+..+++
T Consensus 117 ~~~~~~~~~~~~~~l~~-~g~~~v~~l~~------~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~ 189 (336)
T cd06326 117 RASYADEIAAIVRHLVT-LGLKRIAVFYQ------DDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA 189 (336)
T ss_pred CCChHHHHHHHHHHHHH-hCCceEEEEEe------cCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh
Confidence 34455566777777754 34445544421 1111 111111233455667766655433 2577888888888
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
.+.+++|+.+-.. .+..+.+++++.|++++++++..+
T Consensus 190 ~~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~~~~ 226 (336)
T cd06326 190 ARPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNLSFV 226 (336)
T ss_pred cCCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEEecc
Confidence 8899887766332 233455666777888888876543
No 210
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.79 E-value=3.5e+02 Score=24.86 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++.+...++|++++.+.+.+. ...+.+++.+.+ ++||.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~ 86 (288)
T cd01538 44 QISQIENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY 86 (288)
T ss_pred HHHHHHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE
Confidence 4577777888999999998866532 123334444445 556654
No 211
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.68 E-value=69 Score=34.24 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=11.1
Q ss_pred chHHHHHHHHHhCCCEE
Q 019697 221 DTNKIVDNIEDRGINQV 237 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~L 237 (337)
-.+++.+.|++++|..=
T Consensus 425 ~~~~~~~~l~~~g~~~~ 441 (577)
T PLN02948 425 TMKDAAEILDSFGVPYE 441 (577)
T ss_pred HHHHHHHHHHHcCCCeE
Confidence 35677777777777654
No 212
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=35.67 E-value=34 Score=30.49 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=31.7
Q ss_pred eeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 213 LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
++--|+.+.+.++++++++.+++.++.+-|-...-.. .++-. ...||||+|-.
T Consensus 35 ~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg-vva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 35 ASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPG-VVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp --TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHH-HHHHH-----SSS-EEEEEE-
T ss_pred EeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchh-hheec-----cCCCEEEeecC
Confidence 3445666677788888888888877777665443322 23322 46789999943
No 213
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=35.65 E-value=2.6e+02 Score=27.78 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=28.9
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
+||......|..++.+-|++.||+...++.|+.++..
T Consensus 165 iig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~ 201 (406)
T cd01967 165 IIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDE 201 (406)
T ss_pred EEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHH
Confidence 4554433458899999999999999999998877665
No 214
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=35.60 E-value=77 Score=35.39 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~ 253 (337)
..+++++.+++.++|.++-|||--.+..|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 467889999999999999999999999988875
No 215
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=34.43 E-value=4e+02 Score=25.04 Aligned_cols=28 Identities=11% Similarity=-0.103 Sum_probs=20.3
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
..||++...-.-|-...++.++-+.+.+
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~ 91 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA 91 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH
Confidence 4788887655566777788888777753
No 216
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.36 E-value=1.5e+02 Score=28.78 Aligned_cols=57 Identities=30% Similarity=0.436 Sum_probs=36.6
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcce
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL 213 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~L 213 (337)
.+|..+ || .|| |+..+...+.+.|++.+|.|.++||-.-.+. +..+..|...+-.+|
T Consensus 109 ~~vfll--Gg-kp~---V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~------~~i~~~I~~s~pdil 165 (253)
T COG1922 109 KRVFLL--GG-KPG---VAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE------EAIVERIAASGPDIL 165 (253)
T ss_pred ceEEEe--cC-CHH---HHHHHHHHHHHHCCCceEEEecCCCCChhhH------HHHHHHHHhcCCCEE
Confidence 566554 33 343 6777777788889999999999998754322 234555555544444
No 217
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=34.10 E-value=75 Score=24.94 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=29.0
Q ss_pred cCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 208 RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 208 ~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
.++-+|=+. . .....+.+.|+++++..+++|||.++...
T Consensus 49 ~~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 49 NNAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred cCCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccCH
Confidence 344566565 3 23378888999999999999999987653
No 218
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.88 E-value=3.2e+02 Score=25.27 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhCCCEEEE-EcCCc--------cH--H-HHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchh
Q 019697 221 DTNKIVDNIEDRGINQVYI-IGGDG--------TQ--K-GAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~Lvi-IGGdg--------s~--~-~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdT 287 (337)
+..++.+.++++||..--+ .++.. .. . ....+.+.++-. .+.++.|.+|.. +.. .......
T Consensus 53 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~---~~~---~~~~~~~ 126 (284)
T PRK13210 53 ERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGY---DVY---YEEKSEE 126 (284)
T ss_pred HHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCc---ccc---cccccHH
Confidence 3566777777777764332 22211 11 1 111122222222 566777765421 100 1122345
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 019697 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRY 319 (337)
Q Consensus 288 Av~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~ 319 (337)
+.+.+++.++.+..-|... +=...+|.++..
T Consensus 127 ~~~~~~~~l~~l~~~a~~~-gv~l~lE~~~~~ 157 (284)
T PRK13210 127 TRQRFIEGLAWAVEQAAAA-QVMLAVEIMDTP 157 (284)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCEEEEEecCcc
Confidence 6666677777776666553 224668998654
No 219
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=33.06 E-value=1.2e+02 Score=25.42 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHH
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~ 294 (337)
+++++.|.+ ..++.|||-+-..+.+++..+.-+.++.-++-.|+ +|++..+..-.|+-++-+....
T Consensus 43 ~~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~--~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 43 PEVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK--DNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred HHHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec--CCceEEEEEEeCCCCHHHHHHH
Confidence 567777764 37999999998888999998887888877777777 4676666677888877665544
No 220
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.91 E-value=4.7e+02 Score=25.39 Aligned_cols=103 Identities=16% Similarity=0.039 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHHhhhc----CCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceeccCC---CCchHHHHHH
Q 019697 157 PGINTVIREIVCGLSYMY----GVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDN 228 (337)
Q Consensus 157 pGmNavIr~lv~~l~~~~----~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTsR~---~~d~~~iv~~ 228 (337)
|......+.+++++.+.. +..++.-+..-+ .+ ..+-......+...|+.+.+..+. ..|+...+..
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~------~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ 190 (351)
T cd06334 117 PTYSDQARALVQYIAEQEGGKLKGKKIALVYHDS------PFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQ 190 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCC------ccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHH
Confidence 334445566666665433 245555554311 11 111111222344566666666554 2578888888
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+++.+-|.|++.+-.. .+..+.+.+++.|++.++++.
T Consensus 191 i~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~~ 227 (351)
T cd06334 191 IRRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIGN 227 (351)
T ss_pred HHHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEEe
Confidence 8888888887665443 233455555666777666653
No 221
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=32.55 E-value=83 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccH----HHHHHHHHHHHHcCC
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQ----KGAALIYKEVEKRGL 261 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~----~~a~~L~e~~~~~~~ 261 (337)
..+++++.++++++..+.+.||.-.+ .....+.++++++..
T Consensus 40 ~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 40 IIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP 84 (139)
T ss_dssp HHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-
T ss_pred hhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC
Confidence 35777778878889999999998888 567777787777655
No 222
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=32.09 E-value=52 Score=29.94 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=22.1
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
++..+.|+|++-||-++-.......+..++...++||.||
T Consensus 39 ~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI 78 (195)
T PRK07649 39 IENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV 78 (195)
T ss_pred HhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE
Confidence 4456788888888888765433222222222223455554
No 223
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=31.94 E-value=23 Score=37.96 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=64.4
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHH-HHHHH-HHcCCceeEEEeeccccCCcccc-CcccCchhHHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEV-EKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAIN 297 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~-L~e~~-~~~~~~i~VVgIPkTIDNDI~gt-D~S~GfdTAv~~~~~~i~ 297 (337)
-..++++++.--+-|+++++||||.+..+.- |.+.- -+...+++|--||.==.|.+..+ -.+-||+=+++.....|.
T Consensus 224 HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iir 303 (579)
T KOG1116|consen 224 HAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIR 303 (579)
T ss_pred HHHHHHHhhhccccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHc
Confidence 3567888888889999999999999776432 22211 01145788899999999998654 345666323333322221
Q ss_pred HHHHhhhcCCCeEEEEEecCCC--ccHHHHHHHHcc
Q 019697 298 AAHVEVESVENGVGIVKLMGRY--SGFISMYATLAS 331 (337)
Q Consensus 298 ~i~~~A~S~~~rV~iVEvMGR~--sG~LA~~aaLAs 331 (337)
.- .++--++.||.+++. -+||.+.-+|-+
T Consensus 304 ---g~--~t~~dv~~v~~~~~~~~fSfLs~~wGlIA 334 (579)
T KOG1116|consen 304 ---GR--LTPMDVSVVEYAGKDRHFSFLSAAWGLIA 334 (579)
T ss_pred ---cC--CCchheeehhhccCcceEEEEeeeeeeEE
Confidence 11 112247777777765 455555444443
No 224
>PLN00197 beta-amylase; Provisional
Probab=31.87 E-value=3.2e+02 Score=29.62 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhCCCEEEE------EcCCc----cHHHHHHHHHHHHHcCCceeEEE----------------eeccc---
Q 019697 222 TNKIVDNIEDRGINQVYI------IGGDG----TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI--- 272 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lvi------IGGdg----s~~~a~~L~e~~~~~~~~i~VVg----------------IPkTI--- 272 (337)
++.=++.||..+++++.+ +=+.+ -..+=.+|++-+++.|+++++|- +|+=|
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~ 208 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEE 208 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 566677888889999864 32222 24566778888888898887762 55543
Q ss_pred ---cCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcC-CCeEEEEEecCCCccH
Q 019697 273 ---DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV-ENGVGIVKLMGRYSGF 322 (337)
Q Consensus 273 ---DNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~-~~rV~iVEvMGR~sG~ 322 (337)
|.||..||. |+|.| |+++.+.+.+...+++-... ..-|-=|++=.+-||-
T Consensus 209 g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GE 279 (573)
T PLN00197 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGE 279 (573)
T ss_pred hccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCcc
Confidence 348888885 88988 55999999999988876553 3445556665555553
No 225
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.74 E-value=2.8e+02 Score=28.47 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=30.3
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHH
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGA 249 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a 249 (337)
+||......|..++.+-|++.||+...++.|+.++...
T Consensus 202 iiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei 239 (456)
T TIGR01283 202 LIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEV 239 (456)
T ss_pred EEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHH
Confidence 56644444578899999999999999999999877654
No 226
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=31.54 E-value=72 Score=30.90 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred EEEEEccccccccCCCeeeCChhhHhchhccCCc--c-eeccCCC--CchHHHHHHHHHhCCCEEEEEcCCcc-------
Q 019697 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT--I-LRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT------- 245 (337)
Q Consensus 178 ~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS--~-LGTsR~~--~d~~~iv~~L~~~~Id~LviIGGdgs------- 245 (337)
..+-+.+|-.|-. .+-+-.....+...-|- + ==|+|.. ..++..+..+...||+.+++++||-.
T Consensus 31 ~fvsvT~~~~~~~----~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~ 106 (281)
T TIGR00677 31 LFIDITWGAGGTT----AELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWT 106 (281)
T ss_pred CEEEeccCCCCcc----hhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Confidence 4466666655521 22222334444444341 1 1245552 45777888889999999999999983
Q ss_pred -----HHHHHHHHHHHHHc---CCceeEEEee
Q 019697 246 -----QKGAALIYKEVEKR---GLQVAVAGIP 269 (337)
Q Consensus 246 -----~~~a~~L~e~~~~~---~~~i~VVgIP 269 (337)
+..|..|-+.+++. .+.|-+.+-|
T Consensus 107 ~~~~~f~~a~~Li~~i~~~~~~~f~igva~~P 138 (281)
T TIGR00677 107 EVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYP 138 (281)
T ss_pred CCCCCCcCHHHHHHHHHHhCCCceEEEEEECC
Confidence 23466777777653 3778888888
No 227
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.24 E-value=1.3e+02 Score=28.98 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=44.9
Q ss_pred chhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 204 ~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.|...|+.+.+..+. ..|+...+..++.-+-|.++++ +.+. .+..+.+.+++.|++.+++++.
T Consensus 171 ~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~--~~~~~~~~~~~~G~~~~~~~~~ 236 (357)
T cd06337 171 ALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPP--DFATFWRQAAQAGFKPKIVTIA 236 (357)
T ss_pred HHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCcc--HHHHHHHHHHHCCCCCCeEEEe
Confidence 345568888777665 4689999999999999997654 4443 2444556677778887787654
No 228
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=31.20 E-value=4.1e+02 Score=24.24 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=44.9
Q ss_pred EEEEEccccccccC---------CCeeeCChhhHhchhccCCc-ceeccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 178 EILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGT-ILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 178 ~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS-~LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.++++-.|..=+++ +++=-++++..+.+.. .|. ++--... ..|++++++.+.+++.+-++++|+.|.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~-~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKK-AGVKIIVFPPEKDTTDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHH-cCCceEEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 67888888865544 3444455555554543 343 3322222 247899999999999999999999887
No 229
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=31.06 E-value=75 Score=30.98 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=60.6
Q ss_pred EEEEEccccccccCCCeeeCChhhHhchhccC-Cc-c--eeccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc------
Q 019697 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRG-GT-I--LRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT------ 245 (337)
Q Consensus 178 ~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~G-GS-~--LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs------ 245 (337)
.+.++..|=.|. ...+.+...+..|..+- |. . ==|+|. ...+..+++.+.+.||+.++.++||..
T Consensus 47 ~~~svt~~d~~~---~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~ 123 (291)
T COG0685 47 GFDSVTIPDGSR---GTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPG 123 (291)
T ss_pred ceEEEEecCCCC---CCCcccHHHHHHHHHhcCCCccceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCC
Confidence 455555444433 34556666666665443 43 1 125555 356889999999999999999999994
Q ss_pred --HHHHHHHHHHHHHc--C-CceeEEEeecc
Q 019697 246 --QKGAALIYKEVEKR--G-LQVAVAGIPKT 271 (337)
Q Consensus 246 --~~~a~~L~e~~~~~--~-~~i~VVgIPkT 271 (337)
...+..|.+.+++. + +.|.+.+-|--
T Consensus 124 ~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~ 154 (291)
T COG0685 124 GKDLYSVDLVELIKKMRGGIFDIGVAAYPEG 154 (291)
T ss_pred ccccCHHHHHHHHHHhcCCeEEEEEEeCCCC
Confidence 34567788888765 3 77777777743
No 230
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=30.73 E-value=4.2e+02 Score=24.19 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=41.1
Q ss_pred eEEEEccC---CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 146 RACIVTCG---GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 146 ~iaIvt~G---G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
|||++... -.-|-.+.++.++.+.+.+ ++ .++.-. .+....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~g-y~~~i~--------------------------------~~~~~~~~ 46 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LG-IEYKYV--------------------------------ESKSDADY 46 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cC-CeEEEE--------------------------------ecCCHHHH
Confidence 57888765 3568888899999888864 22 222211 11112234
Q ss_pred HHHHHHHHHhCCCEEEEEcC
Q 019697 223 NKIVDNIEDRGINQVYIIGG 242 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGG 242 (337)
.+.++.|...++|++++.+-
T Consensus 47 ~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 47 EPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHhCCCCEEEEcCc
Confidence 56778888999999999864
No 231
>PLN02591 tryptophan synthase
Probab=30.04 E-value=1.4e+02 Score=28.60 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe-ecc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKT 271 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI-PkT 271 (337)
..++.++.+++.++|+|++. |=.+..+..+.+.++++++.. |..| |.|
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~-I~lv~Ptt 142 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL-VLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Confidence 35667777777777777776 556666667777777777664 3334 544
No 232
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.94 E-value=1.6e+02 Score=27.47 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCc--cHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdg--s~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
++.+++++.+.+.+-|+++ |||.. +......+.+.+++. .++||+--|.+.+.=.++-|
T Consensus 11 e~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~~-~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKKI-TNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHhh-cCCCEEEECCCccccCcCCC
Confidence 3467788889999999874 55554 445566666666653 46788888988886555544
No 233
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.93 E-value=62 Score=26.98 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=32.1
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..|.+.+++..++++|| |++||-..-+.. =|++++++.|+ +++|=
T Consensus 48 ~~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~gi--~vfGP 92 (100)
T PF02844_consen 48 ITDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAGI--PVFGP 92 (100)
T ss_dssp TT-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT---CEES-
T ss_pred CCCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCCC--cEECc
Confidence 46899999999999999 677777666543 46788887774 46653
No 234
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.82 E-value=2.1e+02 Score=24.49 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=27.2
Q ss_pred HHHHHhCCCEEEEEcCCccHH-----HHHHHHHHHHHcCCceeEEEeeccc
Q 019697 227 DNIEDRGINQVYIIGGDGTQK-----GAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 227 ~~L~~~~Id~LviIGGdgs~~-----~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+.+++.|++++=+-..+.... .+.++.+.++++++++..+..+.-.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~ 52 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNF 52 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESS
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 445566666666655555443 3666677777777776655554433
No 235
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=29.77 E-value=1.6e+02 Score=30.48 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=54.4
Q ss_pred EEEEccCCCCchhh-HHHHHHHHHHhhhcCCcEEEEE-ccccccccCCC-eeeCChhhHhchhc-------cCCc--cee
Q 019697 147 ACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGI-EGGYRGFYSKN-TLTLSPKVVNDIHK-------RGGT--ILR 214 (337)
Q Consensus 147 iaIvt~GG~apGmN-avIr~lv~~l~~~~~~~~v~Gi-~~G~~GL~~~~-~~~L~~~~V~~~~~-------~GGS--~LG 214 (337)
|+|+++ ..+++- .=|.++++.+...+++..|+.+ ..||.|-.... +.......++.+.. ..++ +||
T Consensus 129 I~V~st--C~~~lIGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG 206 (457)
T TIGR01284 129 MYTYAT--CTTALIGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLIG 206 (457)
T ss_pred EEEECC--ChHHhhccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEEc
Confidence 444443 455543 2355555555555553455555 47888732211 10000001111110 1122 555
Q ss_pred ccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 215 TsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
......|.+++.+.|++.||+.+-.+.|+.|+..
T Consensus 207 ~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~e 240 (457)
T TIGR01284 207 EYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDE 240 (457)
T ss_pred cCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHH
Confidence 4444567899999999999999988898888665
No 236
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.74 E-value=1.5e+02 Score=29.31 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=49.0
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC-ccc---cCcccCchhHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAV---IDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND-I~g---tD~S~GfdTAv~~~~~~i 296 (337)
++++.+..|-+ .+|.+++|||..|-.+ .+|++-+++.+.+.-.|-=+.=|+-+ +.+ +--|=|-.|=-..+.+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 45666666654 6999999999999766 46778887777666666666655522 111 223445555555555555
Q ss_pred HHHH
Q 019697 297 NAAH 300 (337)
Q Consensus 297 ~~i~ 300 (337)
+.+.
T Consensus 277 ~~l~ 280 (298)
T PRK01045 277 ARLK 280 (298)
T ss_pred HHHH
Confidence 5544
No 237
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=29.55 E-value=4.6e+02 Score=28.71 Aligned_cols=89 Identities=25% Similarity=0.308 Sum_probs=57.4
Q ss_pred HHHHHHHHH--hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHH
Q 019697 223 NKIVDNIED--RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (337)
Q Consensus 223 ~~iv~~L~~--~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~ 300 (337)
+++++.++. +-||+++|-.|--++.-|.+|-+++..-|++ -|+-=|.||+ .+...|
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe-----------------qI~svi---- 168 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE-----------------QIRSVI---- 168 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH-----------------HHHHHH----
Confidence 456666555 5699999999999999999999998776765 3454565543 222222
Q ss_pred HhhhcCCCeEEEEEecCCCcc-H----------HHHHHHHccCC
Q 019697 301 VEVESVENGVGIVKLMGRYSG-F----------ISMYATLASRD 333 (337)
Q Consensus 301 ~~A~S~~~rV~iVEvMGR~sG-~----------LA~~aaLAs~~ 333 (337)
.=|...+.-=-++..-|+.+| | ||+++.|.+++
T Consensus 169 ~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~ 212 (717)
T COG4981 169 RIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRD 212 (717)
T ss_pred HHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCC
Confidence 223334433345555555554 3 78888888754
No 238
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=29.50 E-value=1.5e+02 Score=25.77 Aligned_cols=39 Identities=18% Similarity=0.454 Sum_probs=31.5
Q ss_pred chHHHHHHHHH-hCCCEEEEEcCCccHHHHHHHHHHHHHc
Q 019697 221 DTNKIVDNIED-RGINQVYIIGGDGTQKGAALIYKEVEKR 259 (337)
Q Consensus 221 d~~~iv~~L~~-~~Id~LviIGGdgs~~~a~~L~e~~~~~ 259 (337)
.++++++.+++ .+++.++++|=-||.-++..+.+.+.+.
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~ 45 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPY 45 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhh
Confidence 35677788877 4899999999889999888888776654
No 239
>PRK04155 chaperone protein HchA; Provisional
Probab=29.34 E-value=5.5e+02 Score=25.08 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=30.1
Q ss_pred hHHHHHHHH--HhCCCEEEEEcCCccHHH------HHHHHHHHHHcC-CceeEEEeec
Q 019697 222 TNKIVDNIE--DRGINQVYIIGGDGTQKG------AALIYKEVEKRG-LQVAVAGIPK 270 (337)
Q Consensus 222 ~~~iv~~L~--~~~Id~LviIGGdgs~~~------a~~L~e~~~~~~-~~i~VVgIPk 270 (337)
++.+.+... ..+.|+||+-||-|.+.. +.+|.+.+.+.+ +-..|++=|.
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa 191 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA 191 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH
Confidence 455555544 468999999999998664 344555555543 3334444454
No 240
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=29.14 E-value=6.1e+02 Score=25.59 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=28.5
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
+||......|.+++.+.|++.|++.+-++.|+.++..
T Consensus 167 liG~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~e 203 (415)
T cd01977 167 YIGDYNIQGDTEVLQKYFERMGIQVLSTFTGNGTYDD 203 (415)
T ss_pred EEccCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHH
Confidence 5554444568899999999999999877777777554
No 241
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=28.86 E-value=4e+02 Score=26.23 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=29.9
Q ss_pred EEEEEcCCccH-HHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 236 QVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 236 ~LviIGGdgs~-~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
-++.-||-|.+ .-|..+++++++++.++-+++-++-+..++
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l 45 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI 45 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc
Confidence 35556666664 447888888888888888888777777766
No 242
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=28.60 E-value=42 Score=31.01 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~ 251 (337)
..+.++.|+++||| |+.||+.|+..|.+
T Consensus 8 ~p~~~~vf~~~gid--~cc~g~~~l~~a~~ 35 (216)
T TIGR03652 8 IPRAARIFRKYGID--FCCGGNVSLAEACK 35 (216)
T ss_pred CccHHHHHHHcCCC--ccCCCcchHHHHHH
Confidence 34677899999999 99999888876654
No 243
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.57 E-value=2.8e+02 Score=31.93 Aligned_cols=106 Identities=11% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCeeEEEEccCCCC----chhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC
Q 019697 143 DEVRACIVTCGGLC----PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG 218 (337)
Q Consensus 143 ~~~~iaIvt~GG~a----pGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~ 218 (337)
+-.||.|+-+|+.. +=..-.-..+++.|++ .|.+++.+..--.... .+....+.... .
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~------~d~~~ad~~y~----------e 67 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIM------TDPAPADTVYF----------E 67 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhh------cCcccCCeeEE----------C
Confidence 34589998888643 2233334455555654 3568887753221111 00000000000 0
Q ss_pred CCchHHHHHHHHHhCCCEEEE-EcCCccHHHHHHHHHH--HHHcCCceeEEEe
Q 019697 219 GHDTNKIVDNIEDRGINQVYI-IGGDGTQKGAALIYKE--VEKRGLQVAVAGI 268 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~Lvi-IGGdgs~~~a~~L~e~--~~~~~~~i~VVgI 268 (337)
..+.+.+.+.++++++|+++. +||...+..+..|++. ++++| ++++|.
T Consensus 68 p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~ 118 (1068)
T PRK12815 68 PLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGT 118 (1068)
T ss_pred CCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECC
Confidence 124577778889999999885 5888777777776643 45545 345553
No 244
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.49 E-value=1.4e+02 Score=26.04 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCeeEEEEccCCCCc---hhhHHHHHHHHHHhhhcCCcEEEEEc--------------cc--cccccCC--CeeeCChhh
Q 019697 143 DEVRACIVTCGGLCP---GINTVIREIVCGLSYMYGVDEILGIE--------------GG--YRGFYSK--NTLTLSPKV 201 (337)
Q Consensus 143 ~~~~iaIvt~GG~ap---GmNavIr~lv~~l~~~~~~~~v~Gi~--------------~G--~~GL~~~--~~~~L~~~~ 201 (337)
+..++++..+|+..+ --+.+++.+...+.+ .+.+++|.. +| |.||..+ +-.+++++.
T Consensus 77 ~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~--~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~~~~~~~~~r 154 (167)
T TIGR01752 77 TGKTVALFGLGDQEGYSETFCDGMGILYDKIKA--RGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEER 154 (167)
T ss_pred CCCEEEEEecCCCCcccHHHHHHHHHHHHHHHH--cCCeEEceecCCCcccccchheeCCCEEEEEEecCCCchhhhHHH
Confidence 456899999987642 235567777666653 345677643 33 5555432 235566666
Q ss_pred Hhchh
Q 019697 202 VNDIH 206 (337)
Q Consensus 202 V~~~~ 206 (337)
++.|.
T Consensus 155 ~~~w~ 159 (167)
T TIGR01752 155 IEKWV 159 (167)
T ss_pred HHHHH
Confidence 66664
No 245
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=28.42 E-value=4.3e+02 Score=23.54 Aligned_cols=25 Identities=0% Similarity=0.174 Sum_probs=19.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
...+.++.|.++++|++++.+.+..
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 43 RQRSYLRMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3456778888899999999987654
No 246
>PLN02803 beta-amylase
Probab=28.33 E-value=3.9e+02 Score=28.80 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhCCCEEEE------EcCC--c--cHHHHHHHHHHHHHcCCceeEEE----------------eeccc---
Q 019697 222 TNKIVDNIEDRGINQVYI------IGGD--G--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI--- 272 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lvi------IGGd--g--s~~~a~~L~e~~~~~~~~i~VVg----------------IPkTI--- 272 (337)
++.=++.||..+++++.+ +=+. + -..+-.+|++-+++.|+++++|- +|+=|
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~ 188 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE 188 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556677888889998864 3322 2 24566778888888888877752 55443
Q ss_pred ---cCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCC-CeEEEEEecCCCccH
Q 019697 273 ---DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE-NGVGIVKLMGRYSGF 322 (337)
Q Consensus 273 ---DNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~~-~rV~iVEvMGR~sG~ 322 (337)
|.||..||. |+|.| |+++.+.+.+...+++-...- .-|-=|++=.+-||-
T Consensus 189 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlGP~GE 259 (548)
T PLN02803 189 MSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMGPCGE 259 (548)
T ss_pred hhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCcc
Confidence 348888885 88888 789999999998887755533 334456665555553
No 247
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=28.32 E-value=1.6e+02 Score=27.93 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=44.3
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~i 225 (337)
||||+.. +.-|.++.+++|+...|... + +.+ +.+++. ..-+.+......++
T Consensus 1 ~v~i~~~-~~~~~~~~~~~gf~~~L~~~-g-------------~~~-~~~~~~-------------~~~a~~d~~~~~~~ 51 (294)
T PF04392_consen 1 KVGILQF-ISHPALDDIVRGFKDGLKEL-G-------------YDE-KNVEIE-------------YKNAEGDPEKLRQI 51 (294)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHHHHT-T---------------C-CCEEEE-------------EEE-TT-HHHHHHH
T ss_pred CeEEEEE-eccHHHHHHHHHHHHHHHHc-C-------------Ccc-ccEEEE-------------EecCCCCHHHHHHH
Confidence 6888886 46888999999999998642 2 112 112111 11112223456788
Q ss_pred HHHHHHhCCCEEEEEcCCccHHHH
Q 019697 226 VDNIEDRGINQVYIIGGDGTQKGA 249 (337)
Q Consensus 226 v~~L~~~~Id~LviIGGdgs~~~a 249 (337)
++.|...+.|.++.+|..-+...+
T Consensus 52 ~~~l~~~~~DlIi~~gt~aa~~~~ 75 (294)
T PF04392_consen 52 ARKLKAQKPDLIIAIGTPAAQALA 75 (294)
T ss_dssp HHHHCCTS-SEEEEESHHHHHHHH
T ss_pred HHHHhcCCCCEEEEeCcHHHHHHH
Confidence 888889999988888766654433
No 248
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.23 E-value=1.9e+02 Score=27.21 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=41.2
Q ss_pred hchhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEE
Q 019697 203 NDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 203 ~~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVg 267 (337)
..+...|+.+.+..+. ..|+...+..+++.+-|.+++.+... .+..+.+.+++.|++.++++
T Consensus 159 ~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 159 KAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 3445567777665543 35788899999999999988775433 33344455566677766665
No 249
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.20 E-value=3e+02 Score=22.27 Aligned_cols=23 Identities=13% Similarity=0.557 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhCC-CEEEEEcCCc
Q 019697 222 TNKIVDNIEDRGI-NQVYIIGGDG 244 (337)
Q Consensus 222 ~~~iv~~L~~~~I-d~LviIGGdg 244 (337)
..++++.+++.+- +..+++||..
T Consensus 67 ~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 67 MKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred HHHHHHHHHHcCCCCCeEEEECCC
Confidence 3445555555544 4445555543
No 250
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=28.07 E-value=5.9e+02 Score=25.10 Aligned_cols=157 Identities=11% Similarity=0.064 Sum_probs=87.5
Q ss_pred EEEccCCCCchhhH-HHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceecc-----CC-CC
Q 019697 148 CIVTCGGLCPGINT-VIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-----RG-GH 220 (337)
Q Consensus 148 aIvt~GG~apGmNa-vIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs-----R~-~~ 220 (337)
-|+.+||..=-++. .+..+++.+... + .+.+++-|.+... .....++.+.++.+...|=..+..+ +. .+
T Consensus 162 eV~lsGGDPLl~~d~~L~~ll~~L~~i-~--~~~~IRi~tr~~~-~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~ 237 (331)
T TIGR00238 162 EILISGGDPLMAKDHELEWLLKRLEEI-P--HLVRLRIGTRLPV-VIPQRITDELCELLASFELQLMLVTHINHCNEITE 237 (331)
T ss_pred EEEEECCccccCCHHHHHHHHHHHHhc-C--CccEEEeecCCCc-cCchhcCHHHHHHHHhcCCcEEEEccCCChHhCCH
Confidence 47788888432332 477777777542 2 2334444433221 1123456666665555442222122 11 13
Q ss_pred chHHHHHHHHHhCCC----EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccC--CccccCcccCchhHHHHHHH
Q 019697 221 DTNKIVDNIEDRGIN----QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN--DIAVIDKSFGFDTAVEEAQR 294 (337)
Q Consensus 221 d~~~iv~~L~~~~Id----~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN--DI~gtD~S~GfdTAv~~~~~ 294 (337)
...+.++.|++.|+. ..++-|=++.......|.+.+.+.|.. |=-+.. .+.+ +=-|.+..+.+.+
T Consensus 238 ~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~~~~g---~~~f~~~~~~~~~ 308 (331)
T TIGR00238 238 EFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLDKVQG---AKHFLVPDAEAAQ 308 (331)
T ss_pred HHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcCCCCC---cccccCCHHHHHH
Confidence 456677778877764 455667788888888888877665432 222221 1122 2347888888888
Q ss_pred HHHHHHHhhhcCCCeEEEEEecC
Q 019697 295 AINAAHVEVESVENGVGIVKLMG 317 (337)
Q Consensus 295 ~i~~i~~~A~S~~~rV~iVEvMG 317 (337)
.++.++.-..+.---.+++|+.|
T Consensus 309 i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 309 IVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHhcCCCCcceeEEecCCC
Confidence 88877665555433468888766
No 251
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.88 E-value=5e+02 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++.+..++++++++...+... .....+++++.+ ++||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~g--iPvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKN--IPVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCC--CCEEEe
Confidence 4577888899999999998866431 123334444445 456644
No 252
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=27.84 E-value=7e+02 Score=25.87 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=102.8
Q ss_pred EEccCCCCchhhH-HHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-----Cch
Q 019697 149 IVTCGGLCPGINT-VIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----HDT 222 (337)
Q Consensus 149 Ivt~GG~apGmNa-vIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~-----~d~ 222 (337)
|+.+||+.==+++ .+..++..+... +.-+.+.+ |-+-.+-- ...+|.+.++.+...+=..++++-.. +..
T Consensus 159 VlLSGGDPLll~d~~L~~iL~~L~~I-phV~~IRI--~TR~pvv~-P~RIT~ell~~Lk~~~~~~v~~h~nhp~Eit~~a 234 (417)
T TIGR03820 159 VLLSGGDPLLLSDDYLDWILTELRAI-PHVEVIRI--GTRVPVVL-PQRITDELVAILKKHHPVWLNTHFNHPREITASS 234 (417)
T ss_pred EEEeCCccccCChHHHHHHHHHHhhc-CCCceEEE--eecccccc-ccccCHHHHHHHHhcCCeEEEEeCCChHhChHHH
Confidence 7788999877766 556666777653 33344444 33322111 23567777766655554566665542 235
Q ss_pred HHHHHHHHHhCCC----EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHH
Q 019697 223 NKIVDNIEDRGIN----QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (337)
Q Consensus 223 ~~iv~~L~~~~Id----~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~ 298 (337)
.+.++.|++.||. .++.=|=|+.-.....|.+.+.+.+...-=+..+. .+.|+ =-|.|-++.+.+.+..
T Consensus 235 ~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d----~v~G~---~hFrv~~~~g~~I~~~ 307 (417)
T TIGR03820 235 KKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCD----LSEGL---SHFRTPVGKGIEIIES 307 (417)
T ss_pred HHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeecc----CCCCc---ccccCcHHHHHHHHHH
Confidence 6677778877774 45666778889999999988877665433333331 22343 3489999999999999
Q ss_pred HHHhhhcCCCeEEEEEecCCC
Q 019697 299 AHVEVESVENGVGIVKLMGRY 319 (337)
Q Consensus 299 i~~~A~S~~~rV~iVEvMGR~ 319 (337)
++.-.++.-.--+++++.|+.
T Consensus 308 lr~~~sG~~vP~~v~d~pgg~ 328 (417)
T TIGR03820 308 LIGHTSGFAVPTYVVDAPGGG 328 (417)
T ss_pred HHHhCCCCCceEEEEecCCCC
Confidence 887776654557889988864
No 253
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=27.53 E-value=1.6e+02 Score=28.80 Aligned_cols=77 Identities=10% Similarity=0.183 Sum_probs=42.8
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc-ccc---CcccCchhHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVI---DKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI-~gt---D~S~GfdTAv~~~~~~i 296 (337)
++++.++.|.+ .+|.+++|||..| ....+|++-+++++.+.-.|-=|.=|+.+. .+. --|=|-.|=-..+.+.+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi 275 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVI 275 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHH
Confidence 35666666654 6999999999999 445788899888876655554454443222 111 12345555544455544
Q ss_pred HHH
Q 019697 297 NAA 299 (337)
Q Consensus 297 ~~i 299 (337)
+.+
T Consensus 276 ~~l 278 (281)
T PF02401_consen 276 DRL 278 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 254
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.41 E-value=2.4e+02 Score=27.14 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCEEEEE-----cCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 224 KIVDNIEDRGINQVYII-----GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviI-----GGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..++..-.+|.|-.+.| +|.+++.+|..|++.+++.++.+-+.|- .|+|.|-
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~t 127 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYA 127 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCC
Confidence 44454455677766665 3456777777777777766666655553 4555543
No 255
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=27.33 E-value=79 Score=32.06 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=16.1
Q ss_pred CCeeEEEEccCCCCchhh
Q 019697 143 DEVRACIVTCGGLCPGIN 160 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmN 160 (337)
++.|||+||+||..|--|
T Consensus 226 s~akIALVTtGGivPkgn 243 (349)
T PF07355_consen 226 SKAKIALVTTGGIVPKGN 243 (349)
T ss_pred HHCEEEEEeccCcccCCC
Confidence 467999999999999887
No 256
>PTZ00063 histone deacetylase; Provisional
Probab=27.13 E-value=2.5e+02 Score=29.35 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEc
Q 019697 162 VIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIG 241 (337)
Q Consensus 162 vIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIG 241 (337)
+++.++..+.+.|+ .+++-+.-|+.++..+..-.++ | +..++.++++.++++++-.+++.|
T Consensus 237 ~f~~ii~~~i~~f~-Pd~IvvqaG~D~~~~DpLg~l~--------------L----t~~g~~~~~~~~~~~~~pil~l~g 297 (436)
T PTZ00063 237 LFKPVISKCVEVYR-PGAIVLQCGADSLTGDRLGRFN--------------L----TIKGHAACVEFVRSLNIPLLVLGG 297 (436)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCccccCCCCCCCcc--------------c----CHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55555554444454 5888899999998776542221 1 112355678888899999888887
Q ss_pred CCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 242 GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 242 Gdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
|-=+.+....-..+... .+++.|..|+++||..+
T Consensus 298 GGY~~~~lar~w~~~t~-----~~~~~~~~~~~~iP~~~ 331 (436)
T PTZ00063 298 GGYTIRNVARCWAYETG-----VILNKHDEMSDQISLND 331 (436)
T ss_pred ccCCchHHHHHHHHHHH-----HHhCCcccCCccCCCCc
Confidence 66666554444333211 14577777899998654
No 257
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=26.99 E-value=4.5e+02 Score=23.37 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=20.8
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
.|||+...=..|..+.++.++-+.+.+
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~ 27 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYK 27 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHH
Confidence 367777766778888899998877754
No 258
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=26.91 E-value=72 Score=28.16 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=11.7
Q ss_pred hCCCEEEEEcCCccHHH
Q 019697 232 RGINQVYIIGGDGTQKG 248 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~ 248 (337)
.++|++++-||.++...
T Consensus 41 ~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 41 LNPDAIVISPGPGHPED 57 (184)
T ss_pred cCCCEEEECCCCCCccc
Confidence 46777777787777543
No 259
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=26.83 E-value=8.7e+02 Score=26.61 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=91.6
Q ss_pred CCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhh----HhchhccCC---cce
Q 019697 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV----VNDIHKRGG---TIL 213 (337)
Q Consensus 141 ~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~----V~~~~~~GG---S~L 213 (337)
..+..+..++++--..| +|..+.+...+ -++.--+|+.++-.=+++..++.++.+. +..+....+ .++
T Consensus 448 ~~k~yrqT~mftatm~p----~verlar~ylr-~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiII 522 (673)
T KOG0333|consen 448 SSKKYRQTVMFTATMPP----AVERLARSYLR-RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIII 522 (673)
T ss_pred cccceeEEEEEecCCCh----HHHHHHHHHhh-CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEE
Confidence 34456899998644444 66666663322 3444444444554445555566666442 333333332 122
Q ss_pred eccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHH
Q 019697 214 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (337)
Q Consensus 214 GTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~ 293 (337)
=- -++...+.+++.|++.+++.-.+=||-+-=.-...|+....+. ..|=|..=-+-=-=|||-.-+-+-||=| +.+.
T Consensus 523 Fv-N~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t-~dIlVaTDvAgRGIDIpnVSlVinydma-ksie 599 (673)
T KOG0333|consen 523 FV-NTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGT-GDILVATDVAGRGIDIPNVSLVINYDMA-KSIE 599 (673)
T ss_pred EE-echhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcC-CCEEEEecccccCCCCCccceeeecchh-hhHH
Confidence 11 1235688999999999999999999988777777787665432 2222222111112244544455666644 4456
Q ss_pred HHHHHHHHhhhcCCCeE
Q 019697 294 RAINAAHVEVESVENGV 310 (337)
Q Consensus 294 ~~i~~i~~~A~S~~~rV 310 (337)
.++.+|-.++.+.+.++
T Consensus 600 DYtHRIGRTgRAGk~Gt 616 (673)
T KOG0333|consen 600 DYTHRIGRTGRAGKSGT 616 (673)
T ss_pred HHHHHhccccccccCce
Confidence 66677777776665443
No 260
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=26.81 E-value=3.4e+02 Score=24.16 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++.|...++|++++++.+..... .+.+++++ +++|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 346677788889999999876644322 23334444 556654
No 261
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=26.66 E-value=1.4e+02 Score=27.98 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=26.0
Q ss_pred hhHhchhccCCc-ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcC
Q 019697 200 KVVNDIHKRGGT-ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260 (337)
Q Consensus 200 ~~V~~~~~~GGS-~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~ 260 (337)
+.++.+...|.. ++-|+|+....+.+.+.|++++++ +.=++-++.+..+++++++.+
T Consensus 28 ~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~----~~~~~i~ts~~~~~~~l~~~~ 85 (257)
T TIGR01458 28 EAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD----ISEDEVFTPAPAARQLLEEKQ 85 (257)
T ss_pred HHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC----CCHHHeEcHHHHHHHHHHhcC
Confidence 344445555443 445555544444555555555554 222333444444444444433
No 262
>PRK09330 cell division protein FtsZ; Validated
Probab=26.66 E-value=2.6e+02 Score=28.67 Aligned_cols=48 Identities=33% Similarity=0.530 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCc--cHHHH-HHHHHHHHHcC-CceeEEEeec
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDG--TQKGA-ALIYKEVEKRG-LQVAVAGIPK 270 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdg--s~~~a-~~L~e~~~~~~-~~i~VVgIPk 270 (337)
+.++|-+.|+ +-|.+|++-|-| |=+++ -.+++.+++++ +.+.|+..|-
T Consensus 87 ~~e~I~~~l~--~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF 138 (384)
T PRK09330 87 SREEIREALE--GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPF 138 (384)
T ss_pred HHHHHHHHHc--CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 4566666664 689999986533 22332 35666666664 3466666663
No 263
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.66 E-value=81 Score=24.02 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=28.4
Q ss_pred CccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 243 DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 243 dgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
+.|...|.+..+.+++.|++..++-+|..|+.+
T Consensus 8 F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~ 40 (73)
T PF11823_consen 8 FPSTHDAMKAEKLLKKNGIPVRLIPTPREISAG 40 (73)
T ss_pred ECCHHHHHHHHHHHHHCCCcEEEeCCChhccCC
Confidence 567788888888899999999999999988665
No 264
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=26.19 E-value=4.6e+02 Score=23.19 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=19.3
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
||++..+-.-|....+++++-+.+..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~ 27 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA 27 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH
Confidence 67777666677888888888777754
No 265
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=26.13 E-value=2.1e+02 Score=26.55 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHH-HHHHHHHHc--CCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKR--GLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~-~L~e~~~~~--~~~i~VVgI 268 (337)
+..+++.|.++|+..+++|-|-|.+..+. ..++++.++ +..+.++..
T Consensus 88 l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~~~ 137 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVINW 137 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEEEG
T ss_pred HHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 57889999999999999999999876443 344555444 554444443
No 266
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=26.12 E-value=2.3e+02 Score=29.32 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=57.6
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEc-cccccccCCC-eeeCC----hhhHhchh---ccCCc--cee
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIE-GGYRGFYSKN-TLTLS----PKVVNDIH---KRGGT--ILR 214 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~-~G~~GL~~~~-~~~L~----~~~V~~~~---~~GGS--~LG 214 (337)
-|+|+++ .+..=+-.=|.++++.+...+++..|+.+. .||.|-.... +.... ...+..+. ...++ +||
T Consensus 130 ~I~V~tT-C~~elIGDDi~~v~~~~~~~~~~~~vi~v~tpgf~g~s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG 208 (461)
T TIGR01860 130 RMIVYTT-CPTALIGDDIKAVAKKVQKELPDVDIFTVECPGFAGVSQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIG 208 (461)
T ss_pred EEEEEcc-CchhhhcCCHHHHHHHHHHhcCCCcEEEEeCCCcCCcccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEEC
Confidence 4666664 233333344666666666555444566665 7888843221 10000 00111111 11222 566
Q ss_pred ccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 215 TsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
......|..++.+.|++.||+.+..+.|+.++..
T Consensus 209 ~~~~~gd~~el~~lL~~~Gi~v~~~~~g~~t~~e 242 (461)
T TIGR01860 209 DYNIQGDTQVLQKYWDKMGIQVIAHFTGNGTYDD 242 (461)
T ss_pred CCCCcccHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 5444568899999999999999988888887665
No 267
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=26.11 E-value=3.8e+02 Score=25.29 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=50.7
Q ss_pred CCcEEEEEccccccccC---------CCeeeCChhhHhchhccCCcceeccCC--CCchHHHHHHHHHhCCCEEEEEcCC
Q 019697 175 GVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGD 243 (337)
Q Consensus 175 ~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS~LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGd 243 (337)
..++++|+-.|-.=|++ +++--++.+....|...+=+ +-=.+. .-|.+.+++...+++.+-++++||.
T Consensus 23 ~~~~~v~aDgGa~~l~~~gl~P~~~vGDfDSv~~e~~~~~~~~~~~-~~f~~eKd~TD~elAl~~a~e~g~d~i~i~Ga~ 101 (212)
T COG1564 23 KFDKIVAADGGANHLLELGLVPDLAVGDFDSVSEELLAYYKEKTVT-IKFPAEKDSTDLELALDEALERGADEIVILGAL 101 (212)
T ss_pred ccceEEEECcHHHHHHHcCCCccEEEecccccCHHHHHHHhhcCcc-eecChhhccchHHHHHHHHHHcCCCEEEEEecC
Confidence 44679999888876654 34444555555555555433 211222 3478999999999999999999999
Q ss_pred ccHHHHHH
Q 019697 244 GTQKGAAL 251 (337)
Q Consensus 244 gs~~~a~~ 251 (337)
|. |.=+.
T Consensus 102 GG-R~DH~ 108 (212)
T COG1564 102 GG-RLDHA 108 (212)
T ss_pred CC-hHHHH
Confidence 98 44333
No 268
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.93 E-value=3e+02 Score=28.46 Aligned_cols=59 Identities=19% Similarity=0.412 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc--CCceeEE------EeeccccCCccccCccc
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVA------GIPKTIDNDIAVIDKSF 283 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~--~~~i~VV------gIPkTIDNDI~gtD~S~ 283 (337)
+.|++.+++.++++ +..+++||-+.. ++.+++.+. +.++..+ ++|.|-.|.......+.
T Consensus 362 ~~d~~~l~~~l~~~-~~~vi~iG~~~~-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (488)
T PRK03369 362 GASVDALVAEMASR-LVGAVLIGRDRA-----VVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVA 428 (488)
T ss_pred CCCHHHHHHHHhhh-eeEEEEEcCCHH-----HHHHHHHhcCCCCCEEEeccccccccccccccccccccccc
Confidence 56889999988765 888999987753 334444332 3333333 57888888776655444
No 269
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=25.93 E-value=5.4e+02 Score=23.94 Aligned_cols=28 Identities=0% Similarity=-0.181 Sum_probs=20.6
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
..||++...-.-|-.+.+++++.+.+.+
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~ 89 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQ 89 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHH
Confidence 4789988655567777788888777753
No 270
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=25.75 E-value=82 Score=29.37 Aligned_cols=62 Identities=13% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHHHhCCCEEEEEcCCccH----------------HHHHHHHHHHHHcCCceeEE-EeeccccCCc-cccCcccCchhHH
Q 019697 228 NIEDRGINQVYIIGGDGTQ----------------KGAALIYKEVEKRGLQVAVA-GIPKTIDNDI-AVIDKSFGFDTAV 289 (337)
Q Consensus 228 ~L~~~~Id~LviIGGdgs~----------------~~a~~L~e~~~~~~~~i~VV-gIPkTIDNDI-~gtD~S~GfdTAv 289 (337)
.+...+.|+||+.||.+.+ ..+.+|.+.+.+.+-.+..| +=|...-+=+ .+..-|.+.|.++
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~~gr~~T~~~~~~~ 159 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILGAGVKLTIGNDEDT 159 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhccCcEEEecCChhh
Confidence 3345578999999999864 34666666666666444322 2243332212 3444455544333
No 271
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.70 E-value=2.7e+02 Score=30.50 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=50.2
Q ss_pred CEEEEEcCCccHHHHHHHHHHHHHcC--CceeEEEeeccccCCcccc-CcccCchhHHHHHHHHHHHHHHhhhcCCCeEE
Q 019697 235 NQVYIIGGDGTQKGAALIYKEVEKRG--LQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVEVESVENGVG 311 (337)
Q Consensus 235 d~LviIGGdgs~~~a~~L~e~~~~~~--~~i~VVgIPkTIDNDI~gt-D~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~ 311 (337)
.-+++.|||||..=...-.+.+.+.+ ..-+|..+|-==.||+.-. ..-=||+-+-+....++.++.......-.||-
T Consensus 325 ~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~ 404 (634)
T KOG1169|consen 325 FRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWK 404 (634)
T ss_pred ceEEEecCCCcchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceee
Confidence 38999999999887776666654443 4678999999999999531 22224444433233334444333333335676
Q ss_pred EEEecC
Q 019697 312 IVKLMG 317 (337)
Q Consensus 312 iVEvMG 317 (337)
|.-.|.
T Consensus 405 v~v~~~ 410 (634)
T KOG1169|consen 405 VLVEPQ 410 (634)
T ss_pred EEeecc
Confidence 655554
No 272
>PLN02801 beta-amylase
Probab=25.67 E-value=4.9e+02 Score=27.89 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhCCCEEEE------Ec--CCc--cHHHHHHHHHHHHHcCCceeEEE----------------eeccc---
Q 019697 222 TNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI--- 272 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lvi------IG--Gdg--s~~~a~~L~e~~~~~~~~i~VVg----------------IPkTI--- 272 (337)
++.=++.||..+++++.+ += |.+ -..+-++|++-+++.|+++++|- +|+=|
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~ 118 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDV 118 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 566678889999999874 33 233 24566788888888899887652 55543
Q ss_pred ---cCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCC--CeEEEEEecCCCccH
Q 019697 273 ---DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE--NGVGIVKLMGRYSGF 322 (337)
Q Consensus 273 ---DNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~~--~rV~iVEvMGR~sG~ 322 (337)
|.||..||. |+|.| |+++.+.+...+.+++-...- .-|-=||+=.+-||-
T Consensus 119 g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGlGP~GE 190 (517)
T PLN02801 119 GDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGLGPAGE 190 (517)
T ss_pred hccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEccccccc
Confidence 348888874 77887 789999999999888765533 234556665555553
No 273
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=25.65 E-value=1.1e+02 Score=27.44 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.4
Q ss_pred CCEEEEEcCCcc
Q 019697 234 INQVYIIGGDGT 245 (337)
Q Consensus 234 Id~LviIGGdgs 245 (337)
.|+|++.||-++
T Consensus 44 ~d~iIi~gGp~~ 55 (190)
T PRK06895 44 FSHILISPGPDV 55 (190)
T ss_pred CCEEEECCCCCC
Confidence 567777777774
No 274
>PLN02705 beta-amylase
Probab=25.63 E-value=4.9e+02 Score=28.72 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhCCCEEEE------EcC--Cc--cHHHHHHHHHHHHHcCCceeEEE----------------eecccc--
Q 019697 222 TNKIVDNIEDRGINQVYI------IGG--DG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTID-- 273 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lvi------IGG--dg--s~~~a~~L~e~~~~~~~~i~VVg----------------IPkTID-- 273 (337)
++.=++.||..+++++.+ +=+ .+ -..+-.+|++-+++.|+++.+|- +|+=|-
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~ 349 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEI 349 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHh
Confidence 456678889999999974 332 22 24566788898999999987762 555443
Q ss_pred ----CCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcC--CCeEEEEEecCCCccHH
Q 019697 274 ----NDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV--ENGVGIVKLMGRYSGFI 323 (337)
Q Consensus 274 ----NDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~--~~rV~iVEvMGR~sG~L 323 (337)
-||..||. |+|.| |+++.+.+.+...+.+-... ..-|-=||+=.+-||-|
T Consensus 350 g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GEL 422 (681)
T PLN02705 350 GKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGEL 422 (681)
T ss_pred cccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccc
Confidence 37888874 88888 67899999999888775553 12355577766655543
No 275
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=25.60 E-value=1.7e+02 Score=30.16 Aligned_cols=57 Identities=23% Similarity=0.429 Sum_probs=43.0
Q ss_pred ccCCcceeccCC--CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-C--CceeEEEeec
Q 019697 207 KRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-G--LQVAVAGIPK 270 (337)
Q Consensus 207 ~~GGS~LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~--~~i~VVgIPk 270 (337)
..+|.++-|+-- ++.++.++..++++++|.++++|-. .|+..+++. . -...|+.+||
T Consensus 211 r~sG~iInT~g~i~~egy~~llhai~~f~v~vviVLg~E-------rLy~~lkk~~~~~~~v~vv~lpK 272 (415)
T KOG2749|consen 211 RVSGCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQE-------RLYSSLKKDLPPKKNVRVVKLPK 272 (415)
T ss_pred cccceEEeccceeccccHHHHHHHHHHcCccEEEEeccH-------HHHHHHHhhccccccceEEEecC
Confidence 456777776543 5779999999999999999999865 555555443 2 4578999999
No 276
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=25.45 E-value=4.7e+02 Score=23.07 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=19.8
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
|||+...-..|-.+.+++++.+.+.+
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~ 27 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARA 27 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHH
Confidence 67777655678888888888887754
No 277
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=25.42 E-value=3.6e+02 Score=23.48 Aligned_cols=136 Identities=17% Similarity=0.262 Sum_probs=71.2
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCee-eCChhhHhchhccCC-cceeccCCCCchH
Q 019697 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL-TLSPKVVNDIHKRGG-TILRTSRGGHDTN 223 (337)
Q Consensus 146 ~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~-~L~~~~V~~~~~~GG-S~LGTsR~~~d~~ 223 (337)
-|.+++-|||.. ...+..++.+...+.+|+.+...+.=++..-+. .-.++....|...|| |-|-. =+....+
T Consensus 2 ~VLL~n~G~P~~-----~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~-~t~~q~~ 75 (159)
T cd03411 2 AVLLVNLGGPES-----LEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGGGSPLNE-ITRAQAE 75 (159)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCCCCccHH-HHHHHHH
Confidence 366778899988 566666777777777887766554222211111 123445567778876 33310 0012234
Q ss_pred HHHHHHHHhCCCEEEEEc---CCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHH
Q 019697 224 KIVDNIEDRGINQVYIIG---GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIG---Gdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~ 297 (337)
++.+.|.+...+..+.+| |.-+. ....+++.+.|.+ .++.+|- .--..+....|+++.+.+++.
T Consensus 76 ~l~~~L~~~~~~~~v~~amry~~P~i---~~~l~~l~~~g~~-~iivlPl------~P~~S~~Tt~s~~~~~~~~~~ 142 (159)
T cd03411 76 ALEKALDERGIDVKVYLAMRYGPPSI---EEALEELKADGVD-RIVVLPL------YPQYSASTTGSYLDEVERALK 142 (159)
T ss_pred HHHHHHhccCCCcEEEehHhcCCCCH---HHHHHHHHHcCCC-EEEEEEC------CcccccccHHHHHHHHHHHHH
Confidence 555556554434444444 12222 2233444555654 6888885 222334455566666665554
No 278
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=25.30 E-value=3.6e+02 Score=22.23 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=26.7
Q ss_pred HHhCCCEEEEEcCCc-cHHHHHHHHHHHHHcCC
Q 019697 230 EDRGINQVYIIGGDG-TQKGAALIYKEVEKRGL 261 (337)
Q Consensus 230 ~~~~Id~LviIGGdg-s~~~a~~L~e~~~~~~~ 261 (337)
..|+++-++.||-+| |-.-...+.+.++++++
T Consensus 12 ~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hEL 44 (95)
T TIGR00253 12 KAHHLKPVVLVGKNGLTEGVIKEIEQALEHREL 44 (95)
T ss_pred HhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCc
Confidence 368999999999999 56667788888888876
No 279
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.19 E-value=2.3e+02 Score=27.48 Aligned_cols=114 Identities=7% Similarity=-0.058 Sum_probs=59.4
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCCh----------hhHhchhccCCcc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSP----------KVVNDIHKRGGTI 212 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~----------~~V~~~~~~GGS~ 212 (337)
+.+||.|++++- =.|=+.+.+++.+.+.+. ++++.-+.+.+.... ..+..+.. ..+-.+...++..
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~--g~~~~~~~d~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQK--GIKDVIVCDLFGESH-PVITEITKYLYLKSYTIGKELYRLFYYGVEK 78 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhc--CCCcEEEEEhHHhcc-hHHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 456999999764 447788888888888653 344555556664331 10001000 0111222222222
Q ss_pred eeccCC-----CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEE
Q 019697 213 LRTSRG-----GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA 266 (337)
Q Consensus 213 LGTsR~-----~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VV 266 (337)
+...+. .....++.+.+++++.|.++.-++.-++. .+ .++++.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~---~~---~~~~~~~ip~~ 131 (380)
T PRK13609 79 IYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP---EL---KKQTGISIPTY 131 (380)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH---HH---HHhcCCCCCeE
Confidence 211110 01246788999999999888755443222 11 22346667766
No 280
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=25.12 E-value=40 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt 279 (337)
+++.+++.++.. .+-++||||-+-++.+..+++ ++-+--|+.+.+-|....
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP 129 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFP 129 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECS
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECC
Confidence 467787755544 899999999988887766433 466778889999998543
No 281
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=25.06 E-value=69 Score=30.42 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~ 250 (337)
..+.++.|+++||| ||.||+.|+..|.
T Consensus 15 ~P~aa~VF~~~gId--fCcgg~~tLeeA~ 41 (224)
T PRK13276 15 YPKAADIFRSVGID--FCCGGQVSIEAAS 41 (224)
T ss_pred CccHHHHHHHcCCC--cCCCCChhHHHHH
Confidence 45778899999999 4999999988877
No 282
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=24.89 E-value=5.3e+02 Score=26.82 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=59.2
Q ss_pred eEEEEccCCCCchhhH-HHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-----C
Q 019697 146 RACIVTCGGLCPGINT-VIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-----G 219 (337)
Q Consensus 146 ~iaIvt~GG~apGmNa-vIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-----~ 219 (337)
+..||.+=|.+.|-+. -||+++..+.+ .|.++.-+.+ +..||+-|-|-|. .
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~--~G~r~VVfN~---------------------RG~~g~~LtTpr~f~ag~t 181 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQR--KGYRVVVFNH---------------------RGLGGSKLTTPRLFTAGWT 181 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHh--CCcEEEEECC---------------------CCCCCCccCCCceeecCCH
Confidence 3444444455655554 68999887764 2345543321 3356888888885 4
Q ss_pred CchHHHHHHHHHhCCCE-EEEEcCCccHHHHHHHHHHHHHcCCceeEE
Q 019697 220 HDTNKIVDNIEDRGINQ-VYIIGGDGTQKGAALIYKEVEKRGLQVAVA 266 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~-LviIGGdgs~~~a~~L~e~~~~~~~~i~VV 266 (337)
+|++++++.+++.-=++ |+.+| .--|+..|.+|+-+.+-+.+++
T Consensus 182 ~Dl~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~g~~~~l~ 226 (409)
T KOG1838|consen 182 EDLREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEEGDNTPLI 226 (409)
T ss_pred HHHHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhccCCCCce
Confidence 79999999999876666 88776 2334555666665555444443
No 283
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=24.86 E-value=2.4e+02 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=21.3
Q ss_pred ChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCC
Q 019697 198 SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD 243 (337)
Q Consensus 198 ~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGd 243 (337)
....++.+...||..+--.+...+.+...+.+. .+|+|++.||.
T Consensus 28 ~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~--~~DGlil~GG~ 71 (254)
T PRK11366 28 QEKYLNAIIHAGGLPIALPHALAEPSLLEQLLP--KLDGIYLPGSP 71 (254)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHH--hCCEEEeCCCC
Confidence 334555566667753333332222222222222 28888888873
No 284
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.81 E-value=1.8e+02 Score=26.52 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=6.9
Q ss_pred ceeEEEeec
Q 019697 262 QVAVAGIPK 270 (337)
Q Consensus 262 ~i~VVgIPk 270 (337)
..||+|||-
T Consensus 80 ~lPViGVPv 88 (162)
T COG0041 80 PLPVIGVPV 88 (162)
T ss_pred CCCeEeccC
Confidence 577888884
No 285
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.75 E-value=3.9e+02 Score=27.64 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=90.7
Q ss_pred EEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccc-----------c------CCCeeeCChhhHhchhccC-
Q 019697 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF-----------Y------SKNTLTLSPKVVNDIHKRG- 209 (337)
Q Consensus 148 aIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL-----------~------~~~~~~L~~~~V~~~~~~G- 209 (337)
.|+++.|-.|||.-+|+++++. +..|+--.-=|.=| + ++.-.+++.+.++.-...+
T Consensus 85 ~i~~~p~VVpgi~~~I~~~T~~------gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~ 158 (388)
T COG1168 85 WIVFVPGVVPGISLAIRALTKP------GDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER 158 (388)
T ss_pred eEEEcCcchHhHHHHHHHhCcC------CCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC
Confidence 4889999999999999998752 22232111111111 1 2233456666665433333
Q ss_pred -Ccceecc--------CCCCchHHHHHHHHHhCCC-------EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 210 -GTILRTS--------RGGHDTNKIVDNIEDRGIN-------QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 210 -GS~LGTs--------R~~~d~~~iv~~L~~~~Id-------~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+.+|=++ =+.+++.+|.+-+++||+- +=++.+|. ++..+..|.+.+.+ ..+...-.|=.
T Consensus 159 vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~----~~it~~saSKt 233 (388)
T COG1168 159 VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFAD----NSITLTSASKT 233 (388)
T ss_pred ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhc----ceEEEeecccc
Confidence 3333332 2356799999999999864 44677776 66666777776543 22333333444
Q ss_pred CCccccCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCC
Q 019697 274 NDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRD 333 (337)
Q Consensus 274 NDI~gtD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~ 333 (337)
=|++|...|-..-+==+.=+....++.......++ .-|.+|..+|...|.
T Consensus 234 FNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n----------~lg~~A~~aAY~~G~ 283 (388)
T COG1168 234 FNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPS----------ALGIIATEAAYNQGE 283 (388)
T ss_pred ccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCc----------hHHHHHHHHHHHhch
Confidence 46666554433322212113344444433333333 337888888877654
No 286
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=24.70 E-value=36 Score=29.50 Aligned_cols=83 Identities=16% Similarity=0.310 Sum_probs=51.2
Q ss_pred CChh-hHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC
Q 019697 197 LSPK-VVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 197 L~~~-~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
-+|. .+..|...||.+.--.-++..++.+.+.+++..=+-|+|+|+.---.-...+++ ++++|-.=|
T Consensus 11 ~~w~~~i~~wK~~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~AD------yNVaVgnQP------ 78 (120)
T PF01994_consen 11 VSWKSYIREWKEKGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVYELAD------YNVAVGNQP------ 78 (120)
T ss_dssp S-HHHHHHC----SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHHSS------EEEESSSS-------
T ss_pred CCHHHHHHHhcccCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhCC------cceeeCCCC------
Confidence 4554 588899999987766667788999999999888999999999887777666654 455444333
Q ss_pred ccccCcccCchhHHHHHHHHHHHHHH
Q 019697 276 IAVIDKSFGFDTAVEEAQRAINAAHV 301 (337)
Q Consensus 276 I~gtD~S~GfdTAv~~~~~~i~~i~~ 301 (337)
+|-+..++-.+|++..
T Consensus 79 ----------HSEVAALAvFLDrl~~ 94 (120)
T PF01994_consen 79 ----------HSEVAALAVFLDRLFE 94 (120)
T ss_dssp ------------HHHHHHHHHHHHCT
T ss_pred ----------hHHHHHHHHHHHHhcC
Confidence 3455556666676653
No 287
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=24.55 E-value=30 Score=33.31 Aligned_cols=65 Identities=28% Similarity=0.383 Sum_probs=42.4
Q ss_pred chHHHHHHHHHhCCC---EEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHH
Q 019697 221 DTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (337)
Q Consensus 221 d~~~iv~~L~~~~Id---~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~ 291 (337)
.++++++.|.+++++ .|+.+||--...-+--.+.. -.|| |+.+.||-|+- ..+|-|+|--||+|.
T Consensus 14 ~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~-y~RG--i~~i~vPTTLL---a~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 14 TVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAAST-YMRG--IPFIQVPTTLL---AQVDSSIGGKTGVNF 81 (260)
T ss_dssp HHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHH-BTT----EEEEEE-SHH---HHHTTTSSSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHH-HccC--CceEeccccHH---HHHhcccCCCeeeeC
Confidence 468899999999995 89999997665555544443 2345 67999999974 445667776666553
No 288
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=24.21 E-value=31 Score=35.53 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=38.9
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHH--HHHHHHHHHHh
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE--AQRAINAAHVE 302 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~--~~~~i~~i~~~ 302 (337)
..+|.++++|||||.--|..|++. -. .+|. ++..-|+||-|-..+ ..+.+..+...
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~----~V-PPV~----------sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQR----SV-PPVL----------SFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcC----CC-CCeE----------EeecCCccccccccHHHHHHHHHHHhcC
Confidence 469999999999998888888763 11 2232 355669999997654 46666665543
No 289
>PRK09989 hypothetical protein; Provisional
Probab=24.06 E-value=4.8e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
..+++.++.++++|++++=+.+-.+ ..+..+.+.++++|+.++.++.|-
T Consensus 15 ~~l~~~l~~~~~~Gfd~VEl~~~~~--~~~~~~~~~l~~~Gl~v~~~~~~~ 63 (258)
T PRK09989 15 VPFIERFAAARKAGFDAVEFLFPYD--YSTLQIQKQLEQNHLTLALFNTAP 63 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEECCccc--CCHHHHHHHHHHcCCcEEEeccCC
Confidence 3578888888999988885544211 224567777777888887777653
No 290
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=23.99 E-value=1.9e+02 Score=30.43 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
++..+..|.+..+|.++||||.-|-.+. .|+|-+++++.+.-.|-=|.=|+
T Consensus 351 RQdA~~~L~~~~vDlmiVVGG~NSSNT~-~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 351 RQDAMYKLVEEKLDLMLVVGGWNSSNTS-HLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHhhcCCCEEEEECCCCCccHH-HHHHHHHHhCCCEEEECCHHHcC
Confidence 4555666655679999999999987664 57787777776665666666665
No 291
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.94 E-value=5.2e+02 Score=23.04 Aligned_cols=74 Identities=12% Similarity=0.293 Sum_probs=51.5
Q ss_pred ChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcC---CccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 198 SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGG---DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 198 ~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGG---dgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
+.+....+...|=.++. =.-.|.+.+.+.|+ ++|.+|++-+ .........|.+.+++.|++ -+ ||.+..+
T Consensus 33 ~~~~~~~l~~~g~~vv~--~d~~~~~~l~~al~--g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk--~~-v~ss~~~ 105 (233)
T PF05368_consen 33 SSDRAQQLQALGAEVVE--ADYDDPESLVAALK--GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVK--HF-VPSSFGA 105 (233)
T ss_dssp HHHHHHHHHHTTTEEEE--S-TT-HHHHHHHHT--TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-S--EE-EESEESS
T ss_pred chhhhhhhhcccceEee--cccCCHHHHHHHHc--CCceEEeecCcchhhhhhhhhhHHHhhhccccc--eE-EEEEecc
Confidence 33445556666554441 11246778888877 8999999999 77788888899999988855 44 6999988
Q ss_pred Cccc
Q 019697 275 DIAV 278 (337)
Q Consensus 275 DI~g 278 (337)
+...
T Consensus 106 ~~~~ 109 (233)
T PF05368_consen 106 DYDE 109 (233)
T ss_dssp GTTT
T ss_pred cccc
Confidence 8853
No 292
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.90 E-value=2.2e+02 Score=29.36 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=64.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEc------cccccccCCCeeeCChhhHhchhccCCcceecc-C
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIE------GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-R 217 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~------~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs-R 217 (337)
+||+|+. |-+.| +-.-..+++.++.+|+.-+++|+- .|++-|++ ++.-.+-++.. +|+-= |
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~-----~~elsvmGf~E----VL~~lp~ 69 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFD-----MEELSVMGFVE----VLGRLPR 69 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccC-----HHHHHHhhHHH----HHHHHHH
Confidence 4677776 23333 335667888888889988999996 55554433 22222322221 22210 0
Q ss_pred CCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEE
Q 019697 218 GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 218 ~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVg 267 (337)
-..-+.++++++.+.+.|.|+.|=- ..--..+++.+++.+-++++|.
T Consensus 70 llk~~~~~~~~i~~~kpD~~i~IDs---PdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 70 LLKIRRELVRYILANKPDVLILIDS---PDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC---CCCchHHHHHHHHhCCCCCeEE
Confidence 0123578888888999999999843 3333456666677776666665
No 293
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.88 E-value=1.2e+02 Score=28.38 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
.++.++.+++.+++++++. |-.+.....+.+.+++++++.-+..-|.|=.+
T Consensus 93 ~~~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HHHHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 4778888888888888875 33456666777777888877666666777444
No 294
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=23.87 E-value=2.7e+02 Score=25.60 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=25.7
Q ss_pred CeeeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCC
Q 019697 193 NTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD 243 (337)
Q Consensus 193 ~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGd 243 (337)
...-+....++-+...||..+==-. ..+.+.+.+.++ .+|+|++-||.
T Consensus 21 ~~~~i~~~Yv~~i~~aG~~pv~ip~-~~~~~~~~~~l~--~idGlll~GG~ 68 (217)
T PF07722_consen 21 PRSYIAASYVKAIEAAGGRPVPIPY-DADDEELDELLD--RIDGLLLPGGG 68 (217)
T ss_dssp -SEEEEHHHHHHHHHTT-EEEEE-S-S--HHHHHHHHH--CSSEEEE---S
T ss_pred hHHHHhHHHHHHHHHcCCEEEEEcc-CCCHHHHHHHHh--hcCEEEEcCCc
Confidence 4445667778888888886332111 123445555544 59999999999
No 295
>PLN02735 carbamoyl-phosphate synthase
Probab=23.82 E-value=4e+02 Score=30.98 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred ccC-cccccccCCCCeeEEEEccC----CCCchhhHHHHHHHHHHhhhcCCcEEEEEcc------ccccccCCCeeeCCh
Q 019697 131 RAG-PREKVYFKSDEVRACIVTCG----GLCPGINTVIREIVCGLSYMYGVDEILGIEG------GYRGFYSKNTLTLSP 199 (337)
Q Consensus 131 ~ag-pr~~~~f~~~~~~iaIvt~G----G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~------G~~GL~~~~~~~L~~ 199 (337)
|+| ...+-+...+-.||.|+-+| |++.=.-..=..+++.|++ .|.+++.+.. --..+.+.-+++
T Consensus 9 ~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke--~G~~Vi~vd~np~t~~~~~~~aD~~yi~--- 83 (1102)
T PLN02735 9 RAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVVLINSNPATIMTDPETADRTYIA--- 83 (1102)
T ss_pred ecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHH--cCCEEEEEeCCcccccCChhhCcEEEeC---
Q ss_pred hhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEE-EEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 200 KVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVY-IIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 200 ~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~Lv-iIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
..+.+.+.+.++++++|+++ .+||...+..+..|++...-..+.++++|.+
T Consensus 84 -------------------p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~ 135 (1102)
T PLN02735 84 -------------------PMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAK 135 (1102)
T ss_pred -------------------CCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCC
No 296
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.56 E-value=1.6e+02 Score=28.84 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..++++.|++++++.|++-.---|--. |.+-+ ..+++|||||
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTASa~a---l~~LR--~~~~iPVvGv 97 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTASAVA---LEDLR--EKFDIPVVGV 97 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchHHHHH---HHHHH--HhCCCCEEEe
Confidence 468899999999999998764333222 22222 2457778876
No 297
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=23.38 E-value=2.2e+02 Score=27.37 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceeccCC---CCchHHHHHHHHHh----
Q 019697 161 TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR---- 232 (337)
Q Consensus 161 avIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~---- 232 (337)
...+.+++++.+. +..++ ++.+. +..+ ..+.......+...|+.+.++... ..|+...+..|+..
T Consensus 110 ~~~~~~~~~~~~~-g~k~v-aii~~-----~~~~g~~~~~~f~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~~~ 182 (336)
T cd06339 110 DEARRAAEYARSQ-GKRRP-LVLAP-----DGAYGQRVADAFRQAWQQLGGTVVAIESYDPSPTDLSDAIRRLLGVDDSE 182 (336)
T ss_pred HHHHHHHHHHHhc-Cccce-EEEec-----CChHHHHHHHHHHHHHHHcCCceeeeEecCCCHHHHHHHHHHHhccccch
Confidence 4566677776543 33344 33322 1111 112222234556678888876554 35788888888887
Q ss_pred -----------------CCCEEEEEcCCccHHHHHHHHHHHHHcC---CceeEEEee
Q 019697 233 -----------------GINQVYIIGGDGTQKGAALIYKEVEKRG---LQVAVAGIP 269 (337)
Q Consensus 233 -----------------~Id~LviIGGdgs~~~a~~L~e~~~~~~---~~i~VVgIP 269 (337)
+.|.+++++-.+ ..+..+.+.+++.+ .+++++|-.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (336)
T cd06339 183 QRIAQLKSLESEPRRRQDIDAIDAVALPD--GEARLIKPQLLFYYGVPGDVPLYGTS 237 (336)
T ss_pred hhhhhhhhcccCccccCCCCcEEEEecCh--hhhhhhcchhhhhccCcCCCCEEEec
Confidence 899999877654 33444544444444 377788753
No 298
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.38 E-value=3.7e+02 Score=22.42 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcc---HHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs---~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
..=++.|++.|+..++.+-.|+- .-....+.+.+++.|+ ..+.||-+-++ +. ...++...+++
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl--~y~~iPv~~~~-~~--------~~~v~~f~~~l--- 82 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL--QYVHIPVDGGA-IT--------EEDVEAFADAL--- 82 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT---EEEE----TTT-----------HHHHHHHHHHH---
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC--eEEEeecCCCC-CC--------HHHHHHHHHHH---
Confidence 44566888999999999987743 2344456666777775 58999976543 22 12222222222
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHH
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMY 326 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~ 326 (337)
.+ .++.|++---.|+.++.|-+.
T Consensus 83 -~~---~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 83 -ES---LPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp -HT---TTTSEEEE-SCSHHHHHHHHH
T ss_pred -Hh---CCCCEEEECCCChhHHHHHHH
Confidence 22 345699988889888877544
No 299
>PLN02905 beta-amylase
Probab=23.37 E-value=5.5e+02 Score=28.45 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhCCCEEEE------EcCCc----cHHHHHHHHHHHHHcCCceeEEE----------------eeccc---
Q 019697 222 TNKIVDNIEDRGINQVYI------IGGDG----TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI--- 272 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lvi------IGGdg----s~~~a~~L~e~~~~~~~~i~VVg----------------IPkTI--- 272 (337)
+..=++.||..+++++.+ +=+.+ -..+-.+|++-+++.|+++++|- +|+=|
T Consensus 288 l~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~ 367 (702)
T PLN02905 288 LLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEI 367 (702)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 456678889999999964 33322 24567788898999999887762 45433
Q ss_pred ---cCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcC--CCeEEEEEecCCCccHH
Q 019697 273 ---DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV--ENGVGIVKLMGRYSGFI 323 (337)
Q Consensus 273 ---DNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~--~~rV~iVEvMGR~sG~L 323 (337)
|.||..||. |+|.| |+++.+.+.+...+.+-... ..-|-=|++=.+-||-|
T Consensus 368 g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGEL 440 (702)
T PLN02905 368 GRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGEL 440 (702)
T ss_pred hhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccc
Confidence 448888874 88988 68899999999888775553 12355577766666543
No 300
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=23.37 E-value=2.7e+02 Score=26.25 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred hhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 205 ~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
+...|+.+..+.+. ..|+...+..|++.+.|.+++.+... .+..+.+++++.+++.++++...
T Consensus 165 ~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 165 AEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFP---DAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcch---hHHHHHHHHHHcCCCCCEEEEec
Confidence 34456666654433 34777888888888888777655444 23344455566677666665433
No 301
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=23.35 E-value=1.1e+02 Score=24.59 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
|...+....-..++.++++.||..--.....++++. + ++|+..|.
T Consensus 49 dR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~---~--i~vi~t~~ 93 (105)
T PF07085_consen 49 DREDIQLAAIEAGIACIILTGGLEPSEEVLELAKEL---G--IPVISTPY 93 (105)
T ss_dssp T-HHHHHHHCCTTECEEEEETT----HHHHHHHHHH---T---EEEE-SS
T ss_pred CcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHC---C--CEEEEECC
Confidence 446777777778899999999998888888777753 3 78888874
No 302
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=23.00 E-value=5.3e+02 Score=22.77 Aligned_cols=61 Identities=23% Similarity=0.416 Sum_probs=36.8
Q ss_pred hhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCC--ceeEEEe
Q 019697 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGI 268 (337)
Q Consensus 205 ~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~--~i~VVgI 268 (337)
+...|..+...... ..++..+++.+++.+.+.+++.+.. ..+..+.+++++.++ ++++++.
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 160 FKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSG---EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccc---hHHHHHHHHHHHcCCCCCCcEEec
Confidence 34455555443322 2467788888887778887776643 344455566666676 5666654
No 303
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.98 E-value=1.3e+02 Score=31.51 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
.++.++.+.... |.+||.|||||...... --+++|+-..+|--+|---|
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVVT--Gi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVVT--GIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhhH--HHHhcccccCceeeccCccc
Confidence 455566665555 99999999999876532 33444444455666664443
No 304
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.89 E-value=7.8e+02 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=29.3
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
+||...-..|..++.+-|++.|++...++.|+.|+..
T Consensus 163 iig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~ee 199 (410)
T cd01968 163 LIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDE 199 (410)
T ss_pred EECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHH
Confidence 5564444457889999999999999988888877665
No 305
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=22.73 E-value=1.2e+02 Score=27.87 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=32.9
Q ss_pred cCCcceeccCC-CCchHHHHHHHHH-hCCCEEEEEcCCcc-HHHHHHH
Q 019697 208 RGGTILRTSRG-GHDTNKIVDNIED-RGINQVYIIGGDGT-QKGAALI 252 (337)
Q Consensus 208 ~GGS~LGTsR~-~~d~~~iv~~L~~-~~Id~LviIGGdgs-~~~a~~L 252 (337)
.|-.+.|++++ +..+++++.++.. -+|..|++.|-+-. +.+.+.|
T Consensus 40 ~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl 87 (176)
T PF04208_consen 40 AGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSL 87 (176)
T ss_pred cCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHH
Confidence 45579999998 4679999888754 59999998887652 4444444
No 306
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=22.72 E-value=1.7e+02 Score=29.54 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=13.4
Q ss_pred HHhCCCEEEEEcCCccHHH
Q 019697 230 EDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~~~ 248 (337)
.++++|+|++-||.|....
T Consensus 215 ~~~~~DGIvLSgGPgdp~~ 233 (360)
T PRK12564 215 LALNPDGVFLSNGPGDPAA 233 (360)
T ss_pred HhcCCCEEEEeCCCCChHH
Confidence 3457888888888776543
No 307
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.68 E-value=90 Score=30.85 Aligned_cols=63 Identities=11% Similarity=0.296 Sum_probs=39.4
Q ss_pred CCEEEEEcCCccH---HHHHHHHHHHHHc-----CCceeEEEeeccccCCc-------cccCcccCchhHHHHHHHHH
Q 019697 234 INQVYIIGGDGTQ---KGAALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 234 Id~LviIGGdgs~---~~a~~L~e~~~~~-----~~~i~VVgIPkTIDNDI-------~gtD~S~GfdTAv~~~~~~i 296 (337)
++.+++-||.-|+ .....|.+.++++ +..+.+-.=|.+++.+. ...-.|+|.+|.-....+.+
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 129 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL 129 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHh
Confidence 7888888888876 4444455544432 34566767788887654 23456788887765544433
No 308
>PLN02540 methylenetetrahydrofolate reductase
Probab=22.61 E-value=1.1e+02 Score=33.03 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=57.7
Q ss_pred cEEEEEccccccccCCCeeeCChhhHhchhccCC--cce-eccCC--CCchHHHHHHHHHhCCCEEEEEcCCccH-----
Q 019697 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG--TIL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQ----- 246 (337)
Q Consensus 177 ~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GG--S~L-GTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs~----- 246 (337)
...+-+..|-.|= ..+.+-+.+..+.+.-| +++ =|+|. ...++..++.+++.||+.++++.||-..
T Consensus 29 P~FisVT~gAgGs----t~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~ 104 (565)
T PLN02540 29 PLFCDITWGAGGS----TADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKF 104 (565)
T ss_pred CCEEEeCCCCCCC----cHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCc
Confidence 4566666666652 22333344444554433 122 24554 3467888888899999999999998752
Q ss_pred -------HHHHHHHHHHHHc---CCceeEEEeec
Q 019697 247 -------KGAALIYKEVEKR---GLQVAVAGIPK 270 (337)
Q Consensus 247 -------~~a~~L~e~~~~~---~~~i~VVgIPk 270 (337)
..|..|-+++++. .+.|-|.|-|-
T Consensus 105 ~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPE 138 (565)
T PLN02540 105 VQVEGGFACALDLVKHIRSKYGDYFGITVAGYPE 138 (565)
T ss_pred CCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCC
Confidence 3377888888774 37788888873
No 309
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.60 E-value=94 Score=31.88 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=37.3
Q ss_pred hCCCEEEEEcCCccH---HHHHHHHHHHHHc-----CCceeEEEeeccccCCc-------cccCcccCchhHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQ---KGAALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQR 294 (337)
Q Consensus 232 ~~Id~LviIGGdgs~---~~a~~L~e~~~~~-----~~~i~VVgIPkTIDNDI-------~gtD~S~GfdTAv~~~~~ 294 (337)
..++.+++-||.-|+ .....|.+.++++ +..+.+-.=|.+++.+. .....|+|.+|.-....+
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 457788877777775 4445555555543 23456666677776554 234457777776554433
No 310
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=22.50 E-value=1e+02 Score=26.90 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+.+++++.|+ ..-.-++++||-+..+.+....+ .+.+..+|...+.|.
T Consensus 79 ~~~~~v~~lk-~~~~~I~v~GG~~l~~~~l~~iD-------e~~l~v~pv~~~G~~ 126 (158)
T cd00209 79 SLEEALELAE-NTVEEIFVIGGAEIYKQALPYAD-------RLYLTRIHAEFEGDT 126 (158)
T ss_pred CHHHHHHHHh-cCCCeEEEECcHHHHHHHHhhCC-------EEEEEEECCcccCCE
Confidence 5788888888 56667999999888877665532 366788898885554
No 311
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=22.31 E-value=1.5e+02 Score=20.37 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=25.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~ 248 (337)
..+.++++.+++++++.+.++..+|.+.|
T Consensus 16 ~~l~~~~~~~~~~~~~~~~V~d~~~~~~G 44 (57)
T PF00571_consen 16 DSLEEALEIMRKNGISRLPVVDEDGKLVG 44 (57)
T ss_dssp SBHHHHHHHHHHHTSSEEEEESTTSBEEE
T ss_pred CcHHHHHHHHHHcCCcEEEEEecCCEEEE
Confidence 46899999999999999999988876554
No 312
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=22.17 E-value=1.5e+02 Score=30.40 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=14.2
Q ss_pred HHhCCCEEEEEcCCccHHHHHH
Q 019697 230 EDRGINQVYIIGGDGTQKGAAL 251 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~~~a~~ 251 (337)
.++++|+|++-||-|.......
T Consensus 230 ~~~~~dgIilSgGPg~p~~~~~ 251 (382)
T CHL00197 230 LSYQPDGILLSNGPGDPSAIHY 251 (382)
T ss_pred hccCCCEEEEcCCCCChhHHHH
Confidence 4457788888888776544333
No 313
>PLN02161 beta-amylase
Probab=21.89 E-value=6.1e+02 Score=27.28 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=69.6
Q ss_pred chHHHHHHHHHhCCCEEEE------Ec--CCc--cHHHHHHHHHHHHHcCCceeEEE----------------eeccc--
Q 019697 221 DTNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI-- 272 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~Lvi------IG--Gdg--s~~~a~~L~e~~~~~~~~i~VVg----------------IPkTI-- 272 (337)
.++.=++.||..+++++.+ += |.+ -..+-.+|++-+++.|+++++|- +|+=|
T Consensus 118 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~ 197 (531)
T PLN02161 118 ALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIRE 197 (531)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCCHHHHh
Confidence 3566678889999999864 32 222 24566778888888898887752 44433
Q ss_pred ----cCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCC-CeEEEEEecCCCccH
Q 019697 273 ----DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE-NGVGIVKLMGRYSGF 322 (337)
Q Consensus 273 ----DNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~~-~rV~iVEvMGR~sG~ 322 (337)
|.||..+|. |+|.| |+++.+.+.+...+++-...- .-|-=|++=.+-||-
T Consensus 198 ~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GE 269 (531)
T PLN02161 198 IGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEISIGLGPSGE 269 (531)
T ss_pred hhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCcc
Confidence 348888874 88888 789999999998887755532 334456665555553
No 314
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.83 E-value=3.3e+02 Score=26.72 Aligned_cols=52 Identities=13% Similarity=0.347 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
.++++.+..|-+ .+|.+++|||..|-.+ .+|++-+++.+.+.-.|-=+.=|+
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 346666777654 5999999999998766 567788877765554454444443
No 315
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=21.75 E-value=1.2e+02 Score=26.66 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHhCCCEEEEEcCCccHHH---HHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHH
Q 019697 230 EDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~~~---a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~ 292 (337)
...+.|++++-||.++... ...+.+++.+ .++|+.|| |+|++..+...
T Consensus 39 ~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~--~~~PilGI-------------C~G~Q~la~~~ 89 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYDIEGLIELIREARE--RKIPILGI-------------CLGHQILAHAL 89 (192)
T ss_dssp HTTTSSEEEEECESSSTTSHHHHHHHHHHHHH--TTSEEEEE-------------THHHHHHHHHT
T ss_pred hhcCCCEEEECCcCCccccccccccccccccc--cceEEEEE-------------eehhhhhHHhc
Confidence 5678999999999988653 3333344433 34567776 88888766554
No 316
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.70 E-value=5.9e+02 Score=22.87 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=47.8
Q ss_pred eEEEEccCC-CCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccC-CCCchH
Q 019697 146 RACIVTCGG-LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHDTN 223 (337)
Q Consensus 146 ~iaIvt~GG-~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR-~~~d~~ 223 (337)
|||++.-.- .-|-.+.++.++-+.+.. ++ ..+. +..+.. ......
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g-~~v~-------------------------------~~~~~~~~~~~~~ 47 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LG-VDVE-------------------------------YRGPETFDVADMA 47 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hC-CEEE-------------------------------EECCCCCCHHHHH
Confidence 567777544 457777777777777653 22 1221 111111 112345
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+.++.|...++|++++.+.+.... ....+.+.+++ +++|.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~l~~~~~~~--ipvV~~ 88 (271)
T cd06312 48 RLIEAAIAAKPDGIVVTIPDPDAL--DPAIKRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHHCC--CeEEEe
Confidence 677788888999999998764321 12223344445 556654
No 317
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.65 E-value=2.9e+02 Score=24.82 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDG 244 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdg 244 (337)
..++++.+..+++|++++.+.+.
T Consensus 46 ~~~~i~~l~~~~vdgvii~~~~~ 68 (273)
T cd06310 46 QVNLLENAIARGPDAILLAPTDA 68 (273)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCh
Confidence 45667778888999999987653
No 318
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.64 E-value=4.6e+02 Score=23.54 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
.+++.+.+.+.++|++++.+.+.... ..+++.+.+ ||||.+-.
T Consensus 53 ~~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 95 (275)
T cd06295 53 RDWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWGR 95 (275)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEECC
Confidence 34566677778899999887654421 123344444 55665543
No 319
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.45 E-value=6.1e+02 Score=22.88 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhCCCEEEEEcCC
Q 019697 222 TNKIVDNIEDRGINQVYIIGGD 243 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGd 243 (337)
..++++.|...++|++++.+.+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 45 YEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHcCCCEEEECCcc
Confidence 4567777888889999888655
No 320
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=21.42 E-value=2.5e+02 Score=26.29 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhC---CCEEEEEcCCccHH-HHHHHHHHHHHcCCce
Q 019697 222 TNKIVDNIEDRG---INQVYIIGGDGTQK-GAALIYKEVEKRGLQV 263 (337)
Q Consensus 222 ~~~iv~~L~~~~---Id~LviIGGdgs~~-~a~~L~e~~~~~~~~i 263 (337)
.+++++.++++. +..+.+-||.-.++ ....|.+++++.|+++
T Consensus 58 ~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v 103 (238)
T TIGR03365 58 AEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRF 103 (238)
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCE
Confidence 344544444433 55666666666653 3445555555555544
No 321
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=21.42 E-value=2.3e+02 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=30.4
Q ss_pred CCeeeCChhhHhch-hccCCcceeccCCCCchHHHHHHHHHh--CCCEEEEEcCCc
Q 019697 192 KNTLTLSPKVVNDI-HKRGGTILRTSRGGHDTNKIVDNIEDR--GINQVYIIGGDG 244 (337)
Q Consensus 192 ~~~~~L~~~~V~~~-~~~GGS~LGTsR~~~d~~~iv~~L~~~--~Id~LviIGGdg 244 (337)
++..+-+-..+..+ ...|........-.+|.+.|.+.+++. +.|.+++.||-+
T Consensus 14 g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 14 GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 44555555555554 344544443333355666666665543 478888888866
No 322
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=21.35 E-value=1.1e+02 Score=28.24 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=8.5
Q ss_pred CCCEEEEEcCCccH
Q 019697 233 GINQVYIIGGDGTQ 246 (337)
Q Consensus 233 ~Id~LviIGGdgs~ 246 (337)
++|+|++-||.++.
T Consensus 46 ~~dgliisGGp~~~ 59 (214)
T PRK07765 46 QFDGVLLSPGPGTP 59 (214)
T ss_pred CCCEEEECCCCCCh
Confidence 46666666666554
No 323
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=21.32 E-value=2.3e+02 Score=28.01 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=33.6
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
-+..+.+.|++++-|.+++.|--.+.-++...+.. ++|+|++|=.
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~-----~~ipv~Hiea 99 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALAAALAAFY-----LNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHH-----TT-EEEEES-
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHH-----hCCCEEEecC
Confidence 36788899999999999999988877776665554 5688998854
No 324
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.29 E-value=2.4e+02 Score=28.71 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=46.4
Q ss_pred eeccCC-CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 213 LRTSRG-GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 213 LGTsR~-~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
.|-.+. ..+++.++..+++++|..++=-||-.....+.++.|-++++|++++|..|-.
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~g 108 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYG 108 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEEC
Confidence 444443 3478999999999999998888888888888888888888898888887754
No 325
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=21.29 E-value=3.1e+02 Score=23.28 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=44.6
Q ss_pred cccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc--CC
Q 019697 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GL 261 (337)
Q Consensus 184 ~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~--~~ 261 (337)
.|..||+-.+|.-++++...++.. .+|.+.+.+.+..+.=++++ ||--=.-.-+.+|.+.+.++ +-
T Consensus 26 ~GiTGFfl~eYrGvsPd~wkgf~~-----------~EDpE~aik~i~D~s~~AVl-I~tVV~Ee~vekie~~~~Ekla~e 93 (110)
T COG4075 26 AGITGFFLHEYRGVSPDKWKGFSK-----------EEDPESAIKAIRDLSDKAVL-IGTVVKEEKVEKIEELLKEKLANE 93 (110)
T ss_pred cCcceEEEEEecCcChhHhcCccc-----------ccCHHHHHHHHHHhhhceEE-EEEecCHHHHHHHHHHHHHHhcCC
Confidence 456666666666667666554422 27889999998888777654 44444444455555544443 33
Q ss_pred ceeEEEee
Q 019697 262 QVAVAGIP 269 (337)
Q Consensus 262 ~i~VVgIP 269 (337)
+-.++-||
T Consensus 94 ryTIi~ip 101 (110)
T COG4075 94 RYTIIEIP 101 (110)
T ss_pred ceEEEEee
Confidence 34455555
No 326
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=21.07 E-value=2e+02 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhC-CCEEEEEcCCccH----HHHHHHHHHHHHc
Q 019697 221 DTNKIVDNIEDRG-INQVYIIGGDGTQ----KGAALIYKEVEKR 259 (337)
Q Consensus 221 d~~~iv~~L~~~~-Id~LviIGGdgs~----~~a~~L~e~~~~~ 259 (337)
..+++++.++++. +.++.+-||.-.+ .....+.+++++.
T Consensus 50 ~~~~i~~~l~~~~~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 50 LEKEIIRDLNDNPLIDGLTLSGGDPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred HHHHHHHHHHhcCCcCeEEEeChhhCCCCCHHHHHHHHHHHHHh
Confidence 4788888888885 8889999998887 4566667776654
No 327
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.00 E-value=2.7e+02 Score=27.30 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=36.8
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
++++.+..|. ...|.+++|||..|-.+ .+|++-+++.+.+.-.|-=|.=|+-
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT-~rL~eia~~~~~~t~~Ie~~~el~~ 249 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNT-QKLVKICEKNCPNTFHIETADELDL 249 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccH-HHHHHHHHHHCCCEEEECChHHCCH
Confidence 4566677774 46999999999998766 4577877777655555555555543
No 328
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=20.98 E-value=1.7e+02 Score=29.72 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHH-HcCCc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE-KRGLQ 262 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~-~~~~~ 262 (337)
.++..+.|+.++.+.|++.||-.+.+...+..+.+. +++++
T Consensus 250 ~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~ 291 (342)
T COG0533 250 VEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAE 291 (342)
T ss_pred HHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCE
Confidence 467778899999999999999999998888555544 55643
No 329
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.96 E-value=1.4e+02 Score=29.12 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=39.4
Q ss_pred ccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc------HHHHHHHHHHHHHc-CCceeEEEee
Q 019697 215 TSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT------QKGAALIYKEVEKR-GLQVAVAGIP 269 (337)
Q Consensus 215 TsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs------~~~a~~L~e~~~~~-~~~i~VVgIP 269 (337)
|+|. ...++..+..+.+.||+.+++++||.. ...+..|-+.+++. .+++.+-+=|
T Consensus 90 tcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yP 153 (296)
T PRK09432 90 TCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYP 153 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCC
Confidence 4554 235778888899999999999999953 23345666766664 5677777777
No 330
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.93 E-value=6.2e+02 Score=22.82 Aligned_cols=26 Identities=8% Similarity=-0.136 Sum_probs=15.7
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
||++...-.-|-....+.++.+.+.+
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~ 27 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLE 27 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHH
Confidence 55555443445666677777776653
No 331
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.78 E-value=6.4e+02 Score=22.90 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++.+..+++|++++...+.. ....+.+++.+.+ ||||.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~--~~~~~i~~~~~~~--iPvV~~ 86 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGIG--TLTEAVQKAIARG--IPVIDM 86 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChH--HhHHHHHHHHHCC--CcEEEe
Confidence 456778888999999999865421 1122334444444 556655
No 332
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.69 E-value=2.3e+02 Score=23.48 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=26.7
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEE
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVg 267 (337)
+....+++.+.+.++..+++..| ....++.+.++++++ .++|
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi--~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG----AESEELIEAAREAGI--RVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT----S--HHHHHHHHHTT---EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCC--EEEe
Confidence 45788999999999999999999 222344455555564 4554
No 333
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.64 E-value=1.6e+02 Score=28.35 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..++.++.+++.|+|+|++- |-.+..+..+.+.++++|++.-...-|.|=+..+
T Consensus 107 G~e~F~~~~~~aGvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri 160 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTSSKSRI 160 (263)
T ss_pred CHHHHHHHHHHcCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 35777777788888888776 5566777777777777777766666677655444
No 334
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=20.55 E-value=7e+02 Score=23.23 Aligned_cols=105 Identities=19% Similarity=0.329 Sum_probs=55.4
Q ss_pred EccCCCCchhhHH-HHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCccee-----ccCCC---C
Q 019697 150 VTCGGLCPGINTV-IREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR-----TSRGG---H 220 (337)
Q Consensus 150 vt~GG~apGmNav-Ir~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LG-----TsR~~---~ 220 (337)
|.||+ +-|+..+ .+++. + .++.+|--+-.|..-.+.. -+++..+.+...||.+|- +...+ .
T Consensus 77 IVSG~-A~GiD~~ah~~al----~-~~g~tIaVl~~gld~~yp~----~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~ 146 (220)
T TIGR00732 77 IVSGL-ALGIDGIAHKAAL----K-VNGRTIAVLGTGLDQIYPR----QNSKLAAKIAENGGLLLSEYPPDTKPIKYNFP 146 (220)
T ss_pred EEcCc-hhhHHHHHHHHHH----H-cCCCEEEEECCCCccCCch----hhHHHHHHHHHcCCEEEEecCCCCCCCcccHH
Confidence 33444 5565543 33332 2 3455555555555433322 245566667777876661 11111 1
Q ss_pred chHHHHHHHHHhCCCEEEEEcC---CccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 221 DTNKIVDNIEDRGINQVYIIGG---DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGG---dgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
.+.+++..|- +++++++. .||+.+|..- .+++ -+|..+|..+++
T Consensus 147 ~RNriia~ls----~~vivve~~~~sGtl~ta~~A----~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 147 KRNRIISGLS----RAVLVVEAPLKSGALITARYA----LEQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHHhc----CEEEEEECCCCCchHHHHHHH----HHhC--CcEEEEcCCCCC
Confidence 2455555543 67888887 4666655443 3334 468889988775
No 335
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=20.51 E-value=3.9e+02 Score=20.49 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCc-c-H------HHHHHHHHHHHHcCCceeEEEee
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDG-T-Q------KGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdg-s-~------~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.-.+.|++..+++++| |+++|-.+ + . ..+..|.. ..+++|+.||
T Consensus 89 ~~~~~i~~~~~~~~~d-liv~G~~~~~~~~~~~~gs~~~~l~~-----~~~~pVlvv~ 140 (140)
T PF00582_consen 89 DVADAIIEFAEEHNAD-LIVMGSRGRSGLERLLFGSVAEKLLR-----HAPCPVLVVP 140 (140)
T ss_dssp SHHHHHHHHHHHTTCS-EEEEESSSTTSTTTSSSHHHHHHHHH-----HTSSEEEEEE
T ss_pred ccchhhhhccccccce-eEEEeccCCCCccCCCcCCHHHHHHH-----cCCCCEEEeC
Confidence 3468889999999999 45666655 1 1 12333333 2567888776
No 336
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.45 E-value=1.5e+02 Score=30.37 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=41.1
Q ss_pred hCCCEEEEEcCCcc---HHHHHHHHHHHHHc-----CCceeEEEeeccccCCc-------cccCcccCchhHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGT---QKGAALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 232 ~~Id~LviIGGdgs---~~~a~~L~e~~~~~-----~~~i~VVgIPkTIDNDI-------~gtD~S~GfdTAv~~~~~~i 296 (337)
.++..+++-||.-+ ......|.+.++++ +..+.+-.=|.+++-+. ...-.++|.+|.-....+.+
T Consensus 101 ~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l 180 (455)
T TIGR00538 101 RHVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAV 180 (455)
T ss_pred CceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh
Confidence 37888888888776 35556666666653 23456666677776654 23445888877765554433
No 337
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=20.40 E-value=1e+02 Score=27.36 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=34.6
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
+++++++.++. -+.+++|||-.-++.+....+ .+-+--||+.++.|...
T Consensus 77 ~l~~~l~~~~~--~~~I~viGG~~iy~~~l~~~D-------el~lT~i~~~~~gD~~f 125 (159)
T PRK10769 77 SVDEALAAAGD--VPEIMVIGGGRVYEQFLPKAQ-------RLYLTHIDAEVEGDTHF 125 (159)
T ss_pred CHHHHHHHhcC--CCCEEEECcHHHHHHHHHHCC-------EEEEEEECccccCCEEC
Confidence 56666664432 356999999888877665422 46678899999999754
No 338
>PRK02399 hypothetical protein; Provisional
Probab=20.36 E-value=1.2e+02 Score=31.51 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=47.2
Q ss_pred CcEEEEEccccccccCCCeeeCChhhHhchhccCCcceecc--CCC------CchHHHHHHHHH-hCCCEEEEEcCCccH
Q 019697 176 VDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGG------HDTNKIVDNIED-RGINQVYIIGGDGTQ 246 (337)
Q Consensus 176 ~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs--R~~------~d~~~iv~~L~~-~~Id~LviIGGdgs~ 246 (337)
+.+++-+.=|..|=-. ...+++.+.|...+..+...+-+. |+. ....++++.|.+ .+|++++-+||.+.=
T Consensus 30 g~~v~~iDv~~~~~p~-~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~L~~~g~i~gviglGGs~GT 108 (406)
T PRK02399 30 GLEVVTVDVSGLGEPP-FEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAAFVRELYERGDVAGVIGLGGSGGT 108 (406)
T ss_pred CCceEEEecCCCCCCC-CCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCcchH
Confidence 3566666554443100 113667777776654443333332 332 123445554444 569999999998764
Q ss_pred HHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 247 KGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 247 ~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
.-+...-+ .++ +|+||=|
T Consensus 109 ~lat~aMr-----~LP---iG~PKlm 126 (406)
T PRK02399 109 ALATPAMR-----ALP---IGVPKLM 126 (406)
T ss_pred HHHHHHHH-----hCC---CCCCeEE
Confidence 33333222 366 6788855
No 339
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=20.35 E-value=1.6e+02 Score=26.39 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=14.5
Q ss_pred HHHhCCCEEEEEcCCccHHH
Q 019697 229 IEDRGINQVYIIGGDGTQKG 248 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~ 248 (337)
+...+.+++++-||.++...
T Consensus 39 ~~~~~~~~iilsgGp~~~~~ 58 (193)
T PRK08857 39 IEALNPTHLVISPGPCTPNE 58 (193)
T ss_pred HhhCCCCEEEEeCCCCChHH
Confidence 45567788888888877543
No 340
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.26 E-value=8e+02 Score=24.81 Aligned_cols=162 Identities=16% Similarity=0.070 Sum_probs=87.1
Q ss_pred EEEccCCCCchhh-HHHHHHHHHHhhhcCCc------EE--EEEccccccccCCCe-eeCC--hhhHh-chhccCCccee
Q 019697 148 CIVTCGGLCPGIN-TVIREIVCGLSYMYGVD------EI--LGIEGGYRGFYSKNT-LTLS--PKVVN-DIHKRGGTILR 214 (337)
Q Consensus 148 aIvt~GG~apGmN-avIr~lv~~l~~~~~~~------~v--~Gi~~G~~GL~~~~~-~~L~--~~~V~-~~~~~GGS~LG 214 (337)
+||++||==|=+| ..+..+++.+....+.+ .| .|+..+++-|.+.+. +.|. -...+ ..+.. +.+
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~---l~p 239 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSE---LMP 239 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHH---hCC
Confidence 7888877777778 46666667665422211 11 333344444433222 1111 00000 01111 222
Q ss_pred ccCCCCchHHHHHHHHHhC--------CCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCch
Q 019697 215 TSRGGHDTNKIVDNIEDRG--------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (337)
Q Consensus 215 TsR~~~d~~~iv~~L~~~~--------Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~Gfd 286 (337)
.++. ..+++++++++.+- |.++++=|=+++...|.+|++.++.. +..|=-|| -|.+++.++-.=-+
T Consensus 240 v~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIP---yn~~~~~~~~~ps~ 313 (356)
T PRK14462 240 INKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLIL---FNPHEGSKFERPSL 313 (356)
T ss_pred CCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEe---CCCCCCCCCCCCCH
Confidence 2221 24566766665443 67888888899999999999998754 45566677 35666554433223
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCC----ccHHHH
Q 019697 287 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRY----SGFISM 325 (337)
Q Consensus 287 TAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~----sG~LA~ 325 (337)
-.++...+.+ .+..-.+.+-+.+|++ ||-|+.
T Consensus 314 e~i~~f~~~l-------~~~gi~vtvR~~~G~dI~aACGQL~~ 349 (356)
T PRK14462 314 EDMIKFQDYL-------NSKGLLCTIRESKGLDISAACGQLRE 349 (356)
T ss_pred HHHHHHHHHH-------HHCCCcEEEeCCCCCchhhcCccchh
Confidence 3333333322 1222347788888885 676654
No 341
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.17 E-value=3.2e+02 Score=24.18 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=17.9
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
+..+.++.+...++|++++...+.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~ 66 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLS 66 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3445667777888999888876643
No 342
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=20.07 E-value=1.4e+02 Score=28.12 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=24.0
Q ss_pred EEEEEcCCccHHHH-HHHHHHHHHcCCceeEEEeec
Q 019697 236 QVYIIGGDGTQKGA-ALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 236 ~LviIGGdgs~~~a-~~L~e~~~~~~~~i~VVgIPk 270 (337)
.+++.||.+..-.. ..|++++.++|+++.+++-|.
T Consensus 3 i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 3 VVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred EEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56777777765543 477888887777777776544
Done!